RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17890
         (118 letters)



>d3brda2 b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL)
           {Caenorhabditis elegans [TaxId: 6239]}
          Length = 184

 Score =  143 bits (362), Expect = 2e-45
 Identities = 47/109 (43%), Positives = 68/109 (62%), Gaps = 20/109 (18%)

Query: 30  LTREAMERYL--RDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQEQLL 87
           LT + M  +L  +++ + VI I HAKVAQKSYGNEKRFFCPPPCIYL G+GW+L+++++ 
Sbjct: 2   LTSDRMIDFLSNKEKYECVISIFHAKVAQKSYGNEKRFFCPPPCIYLIGQGWKLKKDRVA 61

Query: 88  REGE------------------SEQAAQLCAFIGIGNSDQDMQQLDLNN 118
           +  +                   +QA +L A+IGIG+   + QQLD + 
Sbjct: 62  QLYKTLKASAQKDAAIENDPIHEQQATELVAYIGIGSDTSERQQLDFST 110


>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey
          (Saimiri boliviensis) [TaxId: 27679]}
          Length = 115

 Score = 28.1 bits (62), Expect = 0.14
 Identities = 9/68 (13%), Positives = 20/68 (29%), Gaps = 9/68 (13%)

Query: 10 KVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPP 69
          ++H EG     +    D      E  +         + + +   + +     +      P
Sbjct: 31 QIHLEGRCGGRVFDCRDVAFTVGEGEDH-------DIPIGIDKALEKMQREEQCILHLGP 83

Query: 70 PCIYLYGE 77
             Y +GE
Sbjct: 84 R--YGFGE 89


>d2de6a2 d.129.3.3 (A:143-384) Terminal oxygenase component of
           carbazole CarAa {Janthinobacterium sp. j3 [TaxId:
           213804]}
          Length = 242

 Score = 28.6 bits (64), Expect = 0.16
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 10/43 (23%)

Query: 16  WVPHSLHYRNDDQRLTREAMERYLRD----------RSDMVIV 48
           W P +L   N+D    REAM  +  D           SD  IV
Sbjct: 179 WKPMALEGFNNDDIWAREAMVDFYADDKGWVNEILFESDEAIV 221


>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Thermus thermophilus [TaxId: 274]}
          Length = 345

 Score = 27.0 bits (59), Expect = 0.49
 Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 13/90 (14%)

Query: 1   MIVCDPSQNKVHYEGWVPHSLHYRNDDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYG 60
           +++       +++      S     + +R ++  +ER         +  +  +VA+K   
Sbjct: 128 VLIVRELTGGIYFGEPRGMSEAEAWNTERYSKPEVER---------VARVAFEVARK--- 175

Query: 61  NEKRFFCPPPC-IYLYGEGWRLRQEQLLRE 89
             K         +   GE WR   E++ R 
Sbjct: 176 RRKHVVSVDKANVLEVGEFWRKTVEEVGRG 205


>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
          flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig
          (Sus scrofa) [TaxId: 9823]}
          Length = 380

 Score = 25.6 bits (55), Expect = 1.8
 Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 1/29 (3%)

Query: 20 SLHYRNDDQRLTREAMERYLRDRSDMVIV 48
          +++ R+ D+R     MER+  + +D+VIV
Sbjct: 11 TIYPRDQDKRWEGVNMERF-AEEADVVIV 38


>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
          subtilis [TaxId: 1423]}
          Length = 411

 Score = 25.4 bits (54), Expect = 2.4
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 6/61 (9%)

Query: 16 WVPHSLHYRNDDQRLTREAMERY------LRDRSDMVIVILHAKVAQKSYGNEKRFFCPP 69
           + +SL    +     +   ERY       R      I +  A+ A+  Y  ++      
Sbjct: 5  SLDNSLTLLKEGYLFIKNRTERYNSDLFQARLLGKNFICMTGAEAAKVFYDTDRFQRQNA 64

Query: 70 P 70
           
Sbjct: 65 L 65


>d1a2oa1 c.23.1.1 (A:1-140) Methylesterase CheB, N-terminal domain
          {Salmonella typhimurium [TaxId: 90371]}
          Length = 140

 Score = 24.5 bits (53), Expect = 2.6
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 26 DDQRLTREAMERYLRDRSDMVIV 48
          DD  L R+ M   +   SDM +V
Sbjct: 10 DDSALMRQIMTEIINSHSDMEMV 32


>d1dz3a_ c.23.1.1 (A:) Sporulation response regulator Spo0A
          {Bacillus stearothermophilus [TaxId: 1422]}
          Length = 123

 Score = 24.4 bits (53), Expect = 2.7
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 26 DDQRLTREAMERYLRDRSDMVIV 48
          DD R     ++ Y+  + DM ++
Sbjct: 8  DDNRELVSLLDEYISSQPDMEVI 30


>d1ny5a1 c.23.1.1 (A:1-137) Transcriptional activator sigm54
          (NtrC1), N-terminal domain {Aquifex aeolicus [TaxId:
          63363]}
          Length = 137

 Score = 23.5 bits (50), Expect = 7.3
 Identities = 10/59 (16%), Positives = 19/59 (32%)

Query: 26 DDQRLTREAMERYLRDRSDMVIVILHAKVAQKSYGNEKRFFCPPPCIYLYGEGWRLRQE 84
          +D ++ R  +E YL  +   V      K A K    +         +     G  + + 
Sbjct: 7  EDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKHFNVVLLDLLLPDVNGLEILKW 65


>d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 157

 Score = 23.5 bits (51), Expect = 7.9
 Identities = 5/17 (29%), Positives = 9/17 (52%)

Query: 84  EQLLREGESEQAAQLCA 100
             L  +G   +AA++ A
Sbjct: 39  NALFAQGNYSEAAKVAA 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.432 

Gapped
Lambda     K      H
   0.267   0.0575    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 457,920
Number of extensions: 19434
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 15
Length of query: 118
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 44
Effective length of database: 1,391,576
Effective search space: 61229344
Effective search space used: 61229344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)