Your job contains 1 sequence.
>psy17891
MGRDRFNRGDKPTIYCEGLNSSEIEEEEDRIGESQPFLEQTGRYFYLGTYIGKDEDKQHG
GCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHV
LQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy17891
(163 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q5ZJT7 - symbol:TCEB1 "Uncharacterized protein"... 536 1.2e-51 1
UNIPROTKB|Q2KII4 - symbol:TCEB1 "Transcription elongation... 536 1.2e-51 1
UNIPROTKB|J9P2H3 - symbol:TCEB1 "Uncharacterized protein"... 536 1.2e-51 1
UNIPROTKB|Q15369 - symbol:TCEB1 "Transcription elongation... 536 1.2e-51 1
UNIPROTKB|F2Z545 - symbol:TCEB1 "Uncharacterized protein"... 536 1.2e-51 1
MGI|MGI:1915173 - symbol:Tceb1 "transcription elongation ... 536 1.2e-51 1
RGD|620658 - symbol:Tceb1 "transcription elongation facto... 536 1.2e-51 1
ZFIN|ZDB-GENE-040718-138 - symbol:tceb1b "transcription e... 536 1.2e-51 1
ZFIN|ZDB-GENE-040912-120 - symbol:tceb1a "transcription e... 534 1.9e-51 1
UNIPROTKB|E2R129 - symbol:TCEB1 "Uncharacterized protein"... 527 1.1e-50 1
FB|FBgn0023211 - symbol:Elongin-C "Elongin C" species:722... 525 1.7e-50 1
RGD|2318427 - symbol:LOC100365758 "elongin C-like" specie... 504 2.9e-48 1
WB|WBGene00001236 - symbol:elc-1 species:6239 "Caenorhabd... 442 1.1e-41 1
UNIPROTKB|Q9BKS1 - symbol:elc-1 "Protein ELC-1" species:6... 442 1.1e-41 1
UNIPROTKB|E5RHG8 - symbol:TCEB1 "Transcription elongation... 424 8.7e-40 1
DICTYBASE|DDB_G0284201 - symbol:DDB_G0284201 "putative tr... 264 7.8e-23 1
WB|WBGene00001237 - symbol:elc-2 species:6239 "Caenorhabd... 240 2.7e-20 1
UNIPROTKB|E5RJ89 - symbol:TCEB1 "Transcription elongation... 217 7.5e-18 1
TAIR|locus:2168454 - symbol:AT5G59140 species:3702 "Arabi... 212 2.5e-17 1
POMBASE|SPBC1861.07 - symbol:SPBC1861.07 "elongin C (pred... 208 6.7e-17 1
UNIPROTKB|G4NH96 - symbol:MGG_03902 "Uncharacterized prot... 189 6.9e-15 1
WB|WBGene00077680 - symbol:F54F7.10 species:6239 "Caenorh... 178 1.0e-13 1
SGD|S000005967 - symbol:ELC1 "Elongin C, conserved among ... 176 1.6e-13 1
CGD|CAL0005776 - symbol:ELC1 species:5476 "Candida albica... 137 2.2e-09 1
>UNIPROTKB|Q5ZJT7 [details] [associations]
symbol:TCEB1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931
SMART:SM00512 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 CTD:6921 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525
HOVERGEN:HBG007440 KO:K03872 OMA:PGQFSEN OrthoDB:EOG41ZFCB
EMBL:AADN02024650 EMBL:AJ720347 IPI:IPI00593819
RefSeq:NP_001007889.1 UniGene:Gga.3347 SMR:Q5ZJT7 STRING:Q5ZJT7
Ensembl:ENSGALT00000025230 GeneID:420187 KEGG:gga:420187
InParanoid:Q5ZJT7 NextBio:20823136 Uniprot:Q5ZJT7
Length = 112
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 101/109 (92%), Positives = 105/109 (96%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
>UNIPROTKB|Q2KII4 [details] [associations]
symbol:TCEB1 "Transcription elongation factor B polypeptide
1" species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] InterPro:IPR001232 InterPro:IPR016073
Pfam:PF03931 SMART:SM00512 GO:GO:0005634 GO:GO:0006355
GO:GO:0006351 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 EMBL:BC112626 IPI:IPI00697437 RefSeq:NP_001039958.1
UniGene:Bt.21769 ProteinModelPortal:Q2KII4 SMR:Q2KII4 STRING:Q2KII4
PRIDE:Q2KII4 Ensembl:ENSBTAT00000002843 GeneID:540859
KEGG:bta:540859 CTD:6921 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525
HOVERGEN:HBG007440 InParanoid:Q2KII4 KO:K03872 OMA:PGQFSEN
OrthoDB:EOG41ZFCB NextBio:20878879 Uniprot:Q2KII4
Length = 112
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 101/109 (92%), Positives = 105/109 (96%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
>UNIPROTKB|J9P2H3 [details] [associations]
symbol:TCEB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 CTD:6921
GeneTree:ENSGT00390000011717 KO:K03872 EMBL:AAEX03015871
RefSeq:XP_535104.1 ProteinModelPortal:J9P2H3
Ensembl:ENSCAFT00000043688 GeneID:477914 KEGG:cfa:477914
Uniprot:J9P2H3
Length = 112
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 101/109 (92%), Positives = 105/109 (96%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
>UNIPROTKB|Q15369 [details] [associations]
symbol:TCEB1 "Transcription elongation factor B polypeptide
1" species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0019048 "virus-host
interaction" evidence=IEA] [GO:0030891 "VCB complex" evidence=IEA]
[GO:0032403 "protein complex binding" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0033554
"cellular response to stress" evidence=TAS] [GO:0050434 "positive
regulation of viral transcription" evidence=TAS] [GO:0061418
"regulation of transcription from RNA polymerase II promoter in
response to hypoxia" evidence=TAS] [GO:0071456 "cellular response
to hypoxia" evidence=TAS] Reactome:REACT_71 InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512 Reactome:REACT_120956
GO:GO:0005829 Reactome:REACT_116125 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0005654 GO:GO:0016032 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006368 GO:GO:0006511
Pathway_Interaction_DB:hif1apathway GO:GO:0061418 PDB:2XAI
PDBsum:2XAI Reactome:REACT_1788 GO:GO:0050434 Reactome:REACT_1892
PDB:1LM8 PDB:1LQB PDB:1VCB PDB:2C9W PDB:2IZV PDB:3DCG PDB:3ZRC
PDB:3ZRF PDB:3ZTC PDB:3ZTD PDB:3ZUN PDB:4AJY PDB:4AWJ PDB:4B95
PDB:4B9K PDBsum:1LM8 PDBsum:1LQB PDBsum:1VCB PDBsum:2C9W
PDBsum:2IZV PDBsum:3DCG PDBsum:3ZRC PDBsum:3ZRF PDBsum:3ZTC
PDBsum:3ZTD PDBsum:3ZUN PDBsum:4AJY PDBsum:4AWJ PDBsum:4B95
PDBsum:4B9K CTD:6921 eggNOG:NOG298860 HOGENOM:HOG000216525
HOVERGEN:HBG007440 KO:K03872 OMA:PGQFSEN OrthoDB:EOG41ZFCB
EMBL:L34587 EMBL:BX649138 EMBL:AC022868 EMBL:BC013809 EMBL:BC093065
EMBL:BC100028 EMBL:BC100283 IPI:IPI00300341 IPI:IPI00791185
RefSeq:NP_001191786.1 RefSeq:NP_001191787.1 RefSeq:NP_001191788.1
RefSeq:NP_001191789.1 RefSeq:NP_001191790.1 RefSeq:NP_001191791.1
RefSeq:NP_005639.1 UniGene:Hs.533437 UniGene:Hs.554594
UniGene:Hs.731928 ProteinModelPortal:Q15369 SMR:Q15369
DIP:DIP-29571N IntAct:Q15369 MINT:MINT-1323870 STRING:Q15369
PhosphoSite:Q15369 DMDM:32699511 PaxDb:Q15369 PRIDE:Q15369
DNASU:6921 Ensembl:ENST00000284811 Ensembl:ENST00000518127
Ensembl:ENST00000519487 Ensembl:ENST00000520210
Ensembl:ENST00000520242 Ensembl:ENST00000522337
Ensembl:ENST00000523815 GeneID:6921 KEGG:hsa:6921 UCSC:uc003xzx.2
GeneCards:GC08M074858 HGNC:HGNC:11617 MIM:600788 neXtProt:NX_Q15369
PharmGKB:PA36376 InParanoid:Q15369 ChiTaRS:TCEB1
EvolutionaryTrace:Q15369 GenomeRNAi:6921 NextBio:27077
ArrayExpress:Q15369 Bgee:Q15369 CleanEx:HS_TCEB1
Genevestigator:Q15369 GermOnline:ENSG00000154582 Uniprot:Q15369
Length = 112
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 101/109 (92%), Positives = 105/109 (96%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
>UNIPROTKB|F2Z545 [details] [associations]
symbol:TCEB1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931
SMART:SM00512 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 GeneTree:ENSGT00390000011717 KO:K03872 OMA:PGQFSEN
EMBL:CU210930 RefSeq:XP_001927356.3 RefSeq:XP_003355080.1
RefSeq:XP_003355081.1 RefSeq:XP_003355082.1
ProteinModelPortal:F2Z545 SMR:F2Z545 PRIDE:F2Z545
Ensembl:ENSSSCT00000006770 GeneID:100153381 KEGG:ssc:100153381
Uniprot:F2Z545
Length = 112
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 101/109 (92%), Positives = 105/109 (96%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
>MGI|MGI:1915173 [details] [associations]
symbol:Tceb1 "transcription elongation factor B (SIII),
polypeptide 1" species:10090 "Mus musculus" [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0030891 "VCB complex" evidence=ISO]
[GO:0032403 "protein complex binding" evidence=ISO] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512 MGI:MGI:1915173
GO:GO:0005634 GO:GO:0006355 GO:GO:0006351 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 PDB:2JZ3
PDBsum:2JZ3 PDB:2FNJ PDBsum:2FNJ CTD:6921 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525
HOVERGEN:HBG007440 KO:K03872 OMA:PGQFSEN OrthoDB:EOG41ZFCB
ChiTaRS:TCEB1 EMBL:AK013089 EMBL:AK011757 EMBL:AK011958
EMBL:AK012909 EMBL:AK039746 EMBL:BC009104 EMBL:BC028545
IPI:IPI00323130 RefSeq:NP_080732.1 RefSeq:XP_003946114.1
UniGene:Mm.289248 ProteinModelPortal:P83940 SMR:P83940
IntAct:P83940 MINT:MINT-1851784 STRING:P83940 PhosphoSite:P83940
PaxDb:P83940 PRIDE:P83940 Ensembl:ENSMUST00000115352
GeneID:101056616 GeneID:67923 KEGG:mmu:101056616 KEGG:mmu:67923
UCSC:uc007ajv.1 InParanoid:P83940 EvolutionaryTrace:P83940
NextBio:459323 Bgee:P83940 Genevestigator:P83940
GermOnline:ENSMUSG00000042730 Uniprot:P83940
Length = 112
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 101/109 (92%), Positives = 105/109 (96%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
>RGD|620658 [details] [associations]
symbol:Tceb1 "transcription elongation factor B (SIII),
polypeptide 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=TAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0030891 "VCB complex" evidence=IDA] [GO:0032403 "protein
complex binding" evidence=IPI] [GO:0032968 "positive regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IDA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IC] InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931
SMART:SM00512 RGD:620658 GO:GO:0005634 GO:GO:0006351
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511
GO:GO:0032968 GO:GO:0030891 CTD:6921 eggNOG:NOG298860
HOGENOM:HOG000216525 HOVERGEN:HBG007440 KO:K03872 OrthoDB:EOG41ZFCB
EMBL:L29259 EMBL:BC060566 IPI:IPI00206015 RefSeq:NP_001257490.1
RefSeq:NP_001257491.1 RefSeq:NP_001257492.1 RefSeq:NP_072115.1
UniGene:Rn.38378 UniGene:Rn.48516 UniGene:Rn.5996
ProteinModelPortal:P83941 SMR:P83941 IntAct:P83941 STRING:P83941
PhosphoSite:P83941 PRIDE:P83941 Ensembl:ENSRNOT00000000132
GeneID:64525 KEGG:rno:64525 UCSC:RGD:620658 InParanoid:P83941
NextBio:613346 Genevestigator:P83941 GermOnline:ENSRNOG00000000120
Uniprot:P83941
Length = 112
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 101/109 (92%), Positives = 105/109 (96%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
>ZFIN|ZDB-GENE-040718-138 [details] [associations]
symbol:tceb1b "transcription elongation factor B
(SIII), polypeptide 1b" species:7955 "Danio rerio" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512
ZFIN:ZDB-GENE-040718-138 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0006511 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525
HOVERGEN:HBG007440 KO:K03872 OrthoDB:EOG41ZFCB EMBL:CR788254
EMBL:BC095636 IPI:IPI00506773 RefSeq:NP_001002440.2
UniGene:Dr.31373 SMR:Q502M9 STRING:Q502M9
Ensembl:ENSDART00000142575 GeneID:436713 KEGG:dre:436713 CTD:436713
InParanoid:Q502M9 NextBio:20831155 Uniprot:Q502M9
Length = 112
Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
Identities = 101/109 (92%), Positives = 105/109 (96%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 64 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 112
>ZFIN|ZDB-GENE-040912-120 [details] [associations]
symbol:tceb1a "transcription elongation factor B
(SIII), polypeptide 1a" species:7955 "Danio rerio" [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512
ZFIN:ZDB-GENE-040912-120 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0006511 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525
HOVERGEN:HBG007440 OrthoDB:EOG41ZFCB OMA:DEKSTEY EMBL:CR405710
EMBL:BC081421 IPI:IPI00503491 RefSeq:NP_001004673.1
UniGene:Dr.48734 SMR:Q66IB1 STRING:Q66IB1
Ensembl:ENSDART00000066700 Ensembl:ENSDART00000146911 GeneID:447935
KEGG:dre:447935 CTD:447935 InParanoid:Q66IB1 NextBio:20832453
Uniprot:Q66IB1
Length = 113
Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
Identities = 100/109 (91%), Positives = 105/109 (96%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
E++ +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 5 EERNYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 64
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 65 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 113
>UNIPROTKB|E2R129 [details] [associations]
symbol:TCEB1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511
GeneTree:ENSGT00390000011717 EMBL:AAEX03015871
ProteinModelPortal:E2R129 PRIDE:E2R129 Ensembl:ENSCAFT00000012970
OMA:DEKSTEY NextBio:20853318 Uniprot:E2R129
Length = 151
Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
Identities = 100/108 (92%), Positives = 104/108 (96%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 44 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 103
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLD 162
EIPSHVL KVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLD
Sbjct: 104 EIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLD 151
>FB|FBgn0023211 [details] [associations]
symbol:Elongin-C "Elongin C" species:7227 "Drosophila
melanogaster" [GO:0008023 "transcription elongation factor complex"
evidence=ISS] [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0048813 "dendrite morphogenesis"
evidence=IMP] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0031462
"Cul2-RING ubiquitin ligase complex" evidence=IDA]
InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931 SMART:SM00512
EMBL:AE013599 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0048813 GO:GO:0006511 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 KO:K03872 OMA:PGQFSEN HSSP:Q03071
EMBL:AY070956 EMBL:AY113630 PIR:JC5794 RefSeq:NP_523794.1
RefSeq:NP_725894.1 UniGene:Dm.2829 SMR:Q7JWD6 IntAct:Q7JWD6
STRING:Q7JWD6 EnsemblMetazoa:FBtr0086540 EnsemblMetazoa:FBtr0086541
GeneID:37237 KEGG:dme:Dmel_CG9291 UCSC:CG9291-RA CTD:37237
FlyBase:FBgn0023211 InParanoid:Q7JWD6 OrthoDB:EOG4VT4DR
GenomeRNAi:37237 NextBio:802680 Uniprot:Q7JWD6
Length = 117
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 101/116 (87%), Positives = 107/116 (92%)
Query: 51 IGKDE---DKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENE 107
I DE DK +GGCEGP+AMYVKLISSDGHEF+VKREHAL SGTI+AMLSGPGQFAENE
Sbjct: 2 IAMDEQRGDKIYGGCEGPDAMYVKLISSDGHEFVVKREHALTSGTIRAMLSGPGQFAENE 61
Query: 108 TNEINFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
NE++FREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 62 ANEVHFREIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 117
>RGD|2318427 [details] [associations]
symbol:LOC100365758 "elongin C-like" species:10116 "Rattus
norvegicus" [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] InterPro:IPR001232 InterPro:IPR016073
Pfam:PF03931 SMART:SM00512 RGD:2318427 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 OrthoDB:EOG41ZFCB
IPI:IPI00781199 Ensembl:ENSRNOT00000060096 Uniprot:D3ZIW0
Length = 121
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 96/108 (88%), Positives = 101/108 (93%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
E+K +GG EGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4 EEKTYGGYEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLD 162
EIPSH L KVCMYFTY+VRYTNSSTEIPEFPIAP IALELLMA NFLD
Sbjct: 64 EIPSHALSKVCMYFTYRVRYTNSSTEIPEFPIAPEIALELLMAENFLD 111
>WB|WBGene00001236 [details] [associations]
symbol:elc-1 species:6239 "Caenorhabditis elegans"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0051759 "sister
chromosome movement towards spindle pole involved in meiotic sister
chromatid segregation" evidence=IMP] [GO:0007138 "meiotic anaphase
II" evidence=IMP] [GO:0008595 "anterior/posterior axis
specification, embryo" evidence=IMP] [GO:0019904 "protein domain
specific binding" evidence=IPI] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0008595
Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511
EMBL:FO081643 GO:GO:0007138 GO:GO:0051759 eggNOG:NOG298860
GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525 KO:K03872
OMA:PGQFSEN HSSP:Q03071 RefSeq:NP_497405.1
ProteinModelPortal:Q9BKS1 SMR:Q9BKS1 DIP:DIP-26192N IntAct:Q9BKS1
MINT:MINT-1088427 STRING:Q9BKS1 PaxDb:Q9BKS1
EnsemblMetazoa:Y82E9BR.15 GeneID:190775 KEGG:cel:CELE_Y82E9BR.15
UCSC:Y82E9BR.15 CTD:190775 WormBase:Y82E9BR.15 InParanoid:Q9BKS1
NextBio:946924 Uniprot:Q9BKS1
Length = 124
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 82/109 (75%), Positives = 95/109 (87%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
+ KQ+GG EGP + YVKL+SSD HEFI+KRE AL SGTI+AMLSGPG +AENE+N + FR
Sbjct: 16 QPKQYGGIEGPTSQYVKLVSSDDHEFIIKRELALTSGTIRAMLSGPGVYAENESNVVYFR 75
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
EIPSHVLQKVC YF YKVRYT+++TEIPEFPI P +ALELLMAANFLDC
Sbjct: 76 EIPSHVLQKVCQYFAYKVRYTHAATEIPEFPIPPDVALELLMAANFLDC 124
>UNIPROTKB|Q9BKS1 [details] [associations]
symbol:elc-1 "Protein ELC-1" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931 SMART:SM00512
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0002119
GO:GO:0008595 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 EMBL:FO081643 GO:GO:0007138 GO:GO:0051759
eggNOG:NOG298860 GeneTree:ENSGT00390000011717 HOGENOM:HOG000216525
KO:K03872 OMA:PGQFSEN HSSP:Q03071 RefSeq:NP_497405.1
ProteinModelPortal:Q9BKS1 SMR:Q9BKS1 DIP:DIP-26192N IntAct:Q9BKS1
MINT:MINT-1088427 STRING:Q9BKS1 PaxDb:Q9BKS1
EnsemblMetazoa:Y82E9BR.15 GeneID:190775 KEGG:cel:CELE_Y82E9BR.15
UCSC:Y82E9BR.15 CTD:190775 WormBase:Y82E9BR.15 InParanoid:Q9BKS1
NextBio:946924 Uniprot:Q9BKS1
Length = 124
Score = 442 (160.7 bits), Expect = 1.1e-41, P = 1.1e-41
Identities = 82/109 (75%), Positives = 95/109 (87%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
+ KQ+GG EGP + YVKL+SSD HEFI+KRE AL SGTI+AMLSGPG +AENE+N + FR
Sbjct: 16 QPKQYGGIEGPTSQYVKLVSSDDHEFIIKRELALTSGTIRAMLSGPGVYAENESNVVYFR 75
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
EIPSHVLQKVC YF YKVRYT+++TEIPEFPI P +ALELLMAANFLDC
Sbjct: 76 EIPSHVLQKVCQYFAYKVRYTHAATEIPEFPIPPDVALELLMAANFLDC 124
>UNIPROTKB|E5RHG8 [details] [associations]
symbol:TCEB1 "Transcription elongation factor B polypeptide
1" species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0030891 "VCB complex"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0032968 "positive regulation of transcription elongation from
RNA polymerase II promoter" evidence=IEA] InterPro:IPR016073
Pfam:PF03931 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 EMBL:AC022868 HGNC:HGNC:11617 ChiTaRS:TCEB1
IPI:IPI00982721 ProteinModelPortal:E5RHG8 SMR:E5RHG8
Ensembl:ENST00000519082 ArrayExpress:E5RHG8 Bgee:E5RHG8
Uniprot:E5RHG8
Length = 89
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 79/86 (91%), Positives = 83/86 (96%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFR 114
E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFR
Sbjct: 4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFR 63
Query: 115 EIPSHVLQKVCMYFTYKVRYTNSSTE 140
EIPSHVL KVCMYFTYKVRYTNSSTE
Sbjct: 64 EIPSHVLSKVCMYFTYKVRYTNSSTE 89
>DICTYBASE|DDB_G0284201 [details] [associations]
symbol:DDB_G0284201 "putative transcription
elongation factor B polypeptide 1" species:44689 "Dictyostelium
discoideum" [GO:0006511 "ubiquitin-dependent protein catabolic
process" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR016073 Pfam:PF03931
dictyBase:DDB_G0284201 GO:GO:0005634 GenomeReviews:CM000153_GR
GO:GO:0006355 GO:GO:0006351 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0006511 EMBL:AAFI02000064 eggNOG:NOG298860
KO:K03872 OMA:PGQFSEN RefSeq:XP_638640.1 HSSP:P83940
ProteinModelPortal:Q54Q05 STRING:Q54Q05 EnsemblProtists:DDB0238113
GeneID:8624471 KEGG:ddi:DDB_G0284201 ProtClustDB:CLSZ2430280
Uniprot:Q54Q05
Length = 109
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 51/98 (52%), Positives = 74/98 (75%)
Query: 66 NAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQ-FAENETNEINFREIPSHVLQKV 124
N+ ++L SS GHEF++ R+ + +SGTIK+MLSG F E++ NEI FREI + VL+KV
Sbjct: 11 NSDVLRLYSSTGHEFVLSRKMSYVSGTIKSMLSGDNSNFMEDQNNEIRFREISTPVLEKV 70
Query: 125 CMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLD 162
YF +K +YTNS+T++PEFPI + ++LL+AA+FLD
Sbjct: 71 IQYFYFKNKYTNSTTDLPEFPINEKVVVDLLLAAHFLD 108
>WB|WBGene00001237 [details] [associations]
symbol:elc-2 species:6239 "Caenorhabditis elegans"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931
SMART:SM00512 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 eggNOG:NOG298860 GeneTree:ENSGT00390000011717
HOGENOM:HOG000216525 EMBL:FO081264 PIR:T16211 PIR:T26129
HSSP:Q03071 ProteinModelPortal:Q23153 SMR:Q23153 STRING:Q23153
EnsemblMetazoa:W03H1.2 UCSC:W03H1.2 WormBase:W03H1.2
InParanoid:Q23153 NextBio:941466 Uniprot:Q23153
Length = 163
Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
Identities = 47/103 (45%), Positives = 65/103 (63%)
Query: 61 GCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHV 120
G EGP + YVKL+S+D HEFI+KRE A+ S +++ + + P N + F + SH+
Sbjct: 62 GLEGPRSKYVKLVSNDDHEFIIKREVAMTSKSLRELFANPTVDLAAANNTVYFSDFQSHI 121
Query: 121 LQKVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
LQKVC Y YK +Y +S P F I P IA++LL AAN L+C
Sbjct: 122 LQKVCHYLAYKTKYRHSRVA-PPFDIPPDIAMDLLAAANELEC 163
>UNIPROTKB|E5RJ89 [details] [associations]
symbol:TCEB1 "Transcription elongation factor B polypeptide
1" species:9606 "Homo sapiens" [GO:0006511 "ubiquitin-dependent
protein catabolic process" evidence=IEA] InterPro:IPR016073
Pfam:PF03931 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0006511 EMBL:AC022868 HGNC:HGNC:11617 ChiTaRS:TCEB1
IPI:IPI00973924 ProteinModelPortal:E5RJ89 SMR:E5RJ89
Ensembl:ENST00000519021 ArrayExpress:E5RJ89 Bgee:E5RJ89
Uniprot:E5RJ89
Length = 99
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 41/46 (89%), Positives = 44/46 (95%)
Query: 55 EDKQHGGCEGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGP 100
E+K +GGCEGP+AMYVKLISSDGHEFIVKREHAL SGTIKAMLSGP
Sbjct: 4 EEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGP 49
>TAIR|locus:2168454 [details] [associations]
symbol:AT5G59140 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000394 "RNA splicing, via
endonucleolytic cleavage and ligation" evidence=RCA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=RCA]
[GO:0009062 "fatty acid catabolic process" evidence=RCA]
InterPro:IPR016073 Pfam:PF03931 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 GO:GO:0003746 GO:GO:0006511 EMBL:AB016890
eggNOG:NOG298860 HOGENOM:HOG000216525 KO:K03872 OMA:PGQFSEN
HSSP:Q03071 EMBL:AY045995 EMBL:AY096614 IPI:IPI00536842
RefSeq:NP_568900.1 UniGene:At.6930 ProteinModelPortal:Q9FIG0
SMR:Q9FIG0 IntAct:Q9FIG0 STRING:Q9FIG0 PaxDb:Q9FIG0 PRIDE:Q9FIG0
EnsemblPlants:AT5G59140.1 GeneID:836032 KEGG:ath:AT5G59140
TAIR:At5g59140 InParanoid:Q9FIG0 PhylomeDB:Q9FIG0
ProtClustDB:CLSN2690048 ArrayExpress:Q9FIG0 Genevestigator:Q9FIG0
Uniprot:Q9FIG0
Length = 96
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 40/92 (43%), Positives = 64/92 (69%)
Query: 70 VKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFT 129
VKLIS +G EF++ RE A++S TI++ML+ PG F+E++ + F +I + +L+K+C YF
Sbjct: 5 VKLISMEGFEFVIDREAAMVSQTIRSMLTSPGGFSESKDGVVTFPDISTTILEKICQYFY 64
Query: 130 YKVRYTNSSTEIPEFPIAPAIALELLMAANFL 161
+ ++Y+ EF I P + LEL+MAAN+L
Sbjct: 65 WSLQYSRGKET--EFHIEPELTLELMMAANYL 94
>POMBASE|SPBC1861.07 [details] [associations]
symbol:SPBC1861.07 "elongin C (predicted)" species:4896
"Schizosaccharomyces pombe" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005634 "nucleus" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006511 "ubiquitin-dependent protein
catabolic process" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=ISM] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=ISO] [GO:0070449 "elongin complex" evidence=ISO]
InterPro:IPR001232 InterPro:IPR016073 Pfam:PF03931 SMART:SM00512
PomBase:SPBC1861.07 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0016567 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 GO:GO:0034243
GO:GO:0070449 eggNOG:NOG298860 HOGENOM:HOG000216525 KO:K03872
OMA:PGQFSEN HSSP:P83940 PIR:T39746 RefSeq:NP_596724.1
ProteinModelPortal:Q9USX9 STRING:Q9USX9 EnsemblFungi:SPBC1861.07.1
GeneID:2539714 KEGG:spo:SPBC1861.07 OrthoDB:EOG405W9Q
NextBio:20800866 Uniprot:Q9USX9
Length = 97
Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
Identities = 44/94 (46%), Positives = 64/94 (68%)
Query: 69 YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYF 128
YV+LIS DG FI+++E A +SGTI+A+L+ G F+E + NE F +I + +L+KVC Y
Sbjct: 5 YVRLISGDGFVFILEKEIACLSGTIRAILN-EGIFSEAQKNECTFPDIRATLLEKVCEYL 63
Query: 129 TYKVRYTNSSTEIPEFPIAPAIALELLMAANFLD 162
Y RY N +IP+F I P + LELL+ A +L+
Sbjct: 64 HYNYRYKNQ-LDIPKFDIPPEMVLELLVTAEYLE 96
>UNIPROTKB|G4NH96 [details] [associations]
symbol:MGG_03902 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR016073 Pfam:PF03931 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511 EMBL:CM001236
KO:K03872 RefSeq:XP_003719973.1 ProteinModelPortal:G4NH96
EnsemblFungi:MGG_03902T0 GeneID:2677196 KEGG:mgr:MGG_03902
Uniprot:G4NH96
Length = 106
Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
Identities = 40/99 (40%), Positives = 63/99 (63%)
Query: 63 EGPNAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQ 122
+G + Y+ LIS +G+EF+V RE A +S TI+ M++G F+E+ET +F +I VL
Sbjct: 5 DGTKSKYITLISREGYEFVVLREAAAVSSTIRKMVNG--MFSESETGRCHFEDINGVVLS 62
Query: 123 KVCMYFTYKVRYTNSSTEIPEFPIAPAIALELLMAANFL 161
KV YF Y ++ + ++P+ I + LE+LMAA+FL
Sbjct: 63 KVVEYFHYWYKHRDDQ-DVPDLEIPTELCLEILMAADFL 100
>WB|WBGene00077680 [details] [associations]
symbol:F54F7.10 species:6239 "Caenorhabditis elegans"
[GO:0006511 "ubiquitin-dependent protein catabolic process"
evidence=IEA] InterPro:IPR016073 Pfam:PF03931 Gene3D:3.30.710.10
InterPro:IPR011333 SUPFAM:SSF54695 GO:GO:0006511
GeneTree:ENSGT00390000011717 EMBL:Z67755 RefSeq:NP_001123148.1
UniGene:Cel.37154 ProteinModelPortal:B1Q256 SMR:B1Q256
STRING:B1Q256 EnsemblMetazoa:F54F7.10 GeneID:6418855
KEGG:cel:CELE_F54F7.10 UCSC:F54F7.10 CTD:6418855 WormBase:F54F7.10
eggNOG:NOG275005 HOGENOM:HOG000020620 InParanoid:B1Q256 OMA:LVSNDNH
NextBio:20901907 Uniprot:B1Q256
Length = 138
Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 39/94 (41%), Positives = 56/94 (59%)
Query: 69 YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYF 128
YVKL+S+D HE+ ++R+ A S I+ ML PG+ N T + + S LQKVC Y
Sbjct: 46 YVKLVSNDNHEYYIQRDLAETSRIIRDMLHCPGRSTSNCT--VYLHMVNSRTLQKVCHYL 103
Query: 129 TYKVRYTNSSTEIPEFPIAPAIALELLMAANFLD 162
Y+ +Y + EI F I PA A++LL+ A FL+
Sbjct: 104 AYQKQYLRRNGEIESFNIEPAGAMDLLLVAGFLE 137
>SGD|S000005967 [details] [associations]
symbol:ELC1 "Elongin C, conserved among eukaryotes"
species:4932 "Saccharomyces cerevisiae" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IDA] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0070449 "elongin complex" evidence=IPI]
[GO:0042787 "protein ubiquitination involved in ubiquitin-dependent
protein catabolic process" evidence=IDA;IMP] [GO:0031463 "Cul3-RING
ubiquitin ligase complex" evidence=IMP;IPI] [GO:0070911 "global
genome nucleotide-excision repair" evidence=IMP] InterPro:IPR001232
InterPro:IPR016073 Pfam:PF03931 SMART:SM00512 SGD:S000005967
GO:GO:0005737 Gene3D:3.30.710.10 InterPro:IPR011333 SUPFAM:SSF54695
GO:GO:0070911 EMBL:BK006949 GO:GO:0042787 GO:GO:0031463 EMBL:U44030
GO:GO:0070449 eggNOG:NOG298860 GeneTree:ENSGT00390000011717
HOGENOM:HOG000216525 KO:K03872 OMA:PGQFSEN OrthoDB:EOG405W9Q
EMBL:AB007691 EMBL:AY558329 PIR:JC5792 RefSeq:NP_015279.1 PDB:1HV2
PDBsum:1HV2 ProteinModelPortal:Q03071 SMR:Q03071 DIP:DIP-6531N
IntAct:Q03071 MINT:MINT-708160 STRING:Q03071 PaxDb:Q03071
EnsemblFungi:YPL046C GeneID:856061 KEGG:sce:YPL046C CYGD:YPL046c
EvolutionaryTrace:Q03071 NextBio:981038 Genevestigator:Q03071
GermOnline:YPL046C Uniprot:Q03071
Length = 99
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 38/96 (39%), Positives = 60/96 (62%)
Query: 69 YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYF 128
+V L+S D E+ + R A++S T+KAM+ GP F E++ I ++ SH+L+K Y
Sbjct: 5 FVTLVSKDDKEYEISRSAAMISPTLKAMIEGP--FRESK-GRIELKQFDSHILEKAVEYL 61
Query: 129 TYKVRYTNSST---EIPEFPIAPAIALELLMAANFL 161
Y ++Y+ S EIPEF I ++LELL+AA++L
Sbjct: 62 NYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYL 97
>CGD|CAL0005776 [details] [associations]
symbol:ELC1 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0070449 "elongin complex" evidence=IEA]
[GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA]
[GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA]
[GO:0070911 "global genome nucleotide-excision repair"
evidence=IEA] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IEA]
CGD:CAL0005776 Gene3D:3.30.710.10 InterPro:IPR011333
SUPFAM:SSF54695 eggNOG:NOG298860 HOGENOM:HOG000216525 KO:K03872
EMBL:AACQ01000163 EMBL:AACQ01000164 RefSeq:XP_712207.1
RefSeq:XP_712237.1 ProteinModelPortal:Q59RB3 STRING:Q59RB3
GeneID:3646151 GeneID:3646181 KEGG:cal:CaO19.14139
KEGG:cal:CaO19.6849 Uniprot:Q59RB3
Length = 100
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 34/100 (34%), Positives = 58/100 (58%)
Query: 66 NAMYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVC 125
N +V L+SSD +F++ ++ A +S ++ + G F E +T +I ++ +L+ +
Sbjct: 5 NTEFVTLVSSDNFKFVISKDVASISSVLR---NSQG-FEEGKTGKIKL-DMDGDILECIV 59
Query: 126 MYFTYKVRYTNSSTE---IPEFPIAPAIALELLMAANFLD 162
Y Y +Y +S TE IPEF I +ALELL+ A++LD
Sbjct: 60 EYLYYHYKYKDSVTEGKDIPEFNIPTHLALELLVKADYLD 99
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.139 0.423 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 163 145 0.00071 103 3 11 22 0.44 31
30 0.49 33
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 24
No. of states in DFA: 575 (61 KB)
Total size of DFA: 139 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 13.52u 0.09s 13.61t Elapsed: 00:00:06
Total cpu time: 13.52u 0.09s 13.61t Elapsed: 00:00:07
Start: Thu Aug 15 11:07:54 2013 End: Thu Aug 15 11:08:01 2013