RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17891
         (163 letters)



>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 96

 Score =  142 bits (359), Expect = 2e-45
 Identities = 92/96 (95%), Positives = 93/96 (96%)

Query: 68  MYVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMY 127
           MYVKLISSDGHEFIVKREHAL SGTIKAMLSGPGQFAENETNE+NFREIPSHVL KVCMY
Sbjct: 1   MYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMY 60

Query: 128 FTYKVRYTNSSTEIPEFPIAPAIALELLMAANFLDC 163
           FTYKVRYTNSSTEIPEFPIAP IALELLMAANFLDC
Sbjct: 61  FTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC 96


>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 99

 Score =  113 bits (284), Expect = 5e-34
 Identities = 36/97 (37%), Positives = 59/97 (60%), Gaps = 6/97 (6%)

Query: 69  YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYF 128
           +V L+S D  E+ + R  A++S T+KAM+ GP + ++     I  ++  SH+L+K   Y 
Sbjct: 5   FVTLVSKDDKEYEISRSAAMISPTLKAMIEGPFRESK---GRIELKQFDSHILEKAVEYL 61

Query: 129 TYKVRYTNSS---TEIPEFPIAPAIALELLMAANFLD 162
            Y ++Y+  S    EIPEF I   ++LELL+AA++L 
Sbjct: 62  NYNLKYSGVSEDDDEIPEFEIPTEMSLELLLAADYLS 98


>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex
           Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 72

 Score = 75.3 bits (185), Expect = 2e-19
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 69  YVKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNE--INFREIPSHVLQKVCM 126
            V L+S +G  F V ++ A  S  +K  L+  G   + + +E  +    + S VLQKV  
Sbjct: 2   NVVLVSGEGERFTVDKKIAERSLLLKNYLNDMGDDDDEDDDEIVMPVPNVRSSVLQKVIE 61

Query: 127 YFTY 130
           +  +
Sbjct: 62  WAEH 65


>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 61

 Score = 67.0 bits (164), Expect = 2e-16
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 70  VKLISSDGHEFIVKREHALMSGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMYFT 129
           +KL SSDG  F V  E A  S TIK ML   G       + +    + + +L+KV  + T
Sbjct: 3   IKLQSSDGEIFEVDVEIAKQSVTIKTMLEDLG------MDPVPLPNVNAAILKKVIQWCT 56

Query: 130 Y 130
           +
Sbjct: 57  H 57


>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 55

 Score = 22.6 bits (49), Expect = 9.5
 Identities = 7/10 (70%), Positives = 10/10 (100%)

Query: 153 ELLMAANFLD 162
           EL++AAN+LD
Sbjct: 17  ELILAANYLD 26


>d2bg1a1 e.3.1.1 (A:337-789) Penicillin-binding protein 1b,
           transpeptidase domain {Streptococcus pneumoniae [TaxId:
           1313]}
          Length = 453

 Score = 24.2 bits (51), Expect = 9.8
 Identities = 5/38 (13%), Positives = 13/38 (34%)

Query: 90  SGTIKAMLSGPGQFAENETNEINFREIPSHVLQKVCMY 127
           +G I   + G         +  + +  P+   + +  Y
Sbjct: 95  TGAILGFVGGRNYQENQNNHAFDTKRSPASTTKPLLAY 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 604,285
Number of extensions: 26417
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 11
Length of query: 163
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 84
Effective length of database: 1,322,926
Effective search space: 111125784
Effective search space used: 111125784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (22.9 bits)