BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17893
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1TMW|A Chain A, Solution Structure Of Human Coactosin Like Protein D123n
Length = 149
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 58/104 (55%)
Query: 32 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 91
T +D ++ ++AY VR D S W FKY S I +G + F Q D R F +
Sbjct: 1 ATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAF 60
Query: 92 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135
+R TGD MS+R KF LITW+G V +QRAK DK LVK V+
Sbjct: 61 VRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVV 104
>pdb|1VFQ|A Chain A, The Crystal Structure Of Human Coactosin-Like Protein At
1.9 A Resolution
Length = 143
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 58/104 (55%)
Query: 32 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 91
T +D ++ ++AY VR D S W FKY S I +G + F Q D R F +
Sbjct: 3 ATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAF 62
Query: 92 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135
+R TGD MS+R KF LITW+G V +QRAK DK LVK V+
Sbjct: 63 VRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVV 106
>pdb|1WNJ|A Chain A, Nmr Structure Of Human Coactosin-Like Protein
Length = 145
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 58/104 (55%)
Query: 32 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 91
T +D ++ ++AY VR D S W FKY S I +G + F Q D R F +
Sbjct: 5 ATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAF 64
Query: 92 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135
+R TGD MS+R KF LITW+G V +QRAK DK LVK V+
Sbjct: 65 VRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVV 108
>pdb|1T3X|A Chain A, Three Crystal Structures Of Human Coactosin-Like Protein
pdb|1T3Y|A Chain A, Three Crystal Structures Of Human Coactosin-Like Protein
Length = 141
Score = 88.6 bits (218), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/104 (43%), Positives = 58/104 (55%)
Query: 32 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 91
T +D ++ ++AY VR D S W FKY S I +G + F Q D R F +
Sbjct: 1 ATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAF 60
Query: 92 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135
+R TGD MS+R KF LITW+G V +QRAK DK LVK V+
Sbjct: 61 VRFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVV 104
>pdb|1WM4|A Chain A, Solution Structure Of Mouse Coactosin, An Actin Filament
Binding Protein
Length = 142
Score = 86.3 bits (212), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%)
Query: 32 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 91
T +D ++ ++AY VR D S W F+Y + I +G + F Q D R F +
Sbjct: 2 ATKIDKEACRAAYNLVRDDGSAVIWVTFRYDGATIVPGDQGADYQHFIQQCTDDVRLFAF 61
Query: 92 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135
+R TGD MS+R KF LITW+G +V +QRAK DK LVK V+
Sbjct: 62 VRFTTGDAMSKRSKFALITWIGEDVSGLQRAKTGTDKTLVKEVV 105
>pdb|1UDM|A Chain A, Solution Structure Of Coactosin-Like Protein (Cofilin
Family) From Mus Musculus
Length = 149
Score = 85.9 bits (211), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 59/104 (56%)
Query: 32 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 91
T +D ++ ++AY VR D S W F+Y + I +G + F Q D R F +
Sbjct: 9 ATKIDKEACRAAYNLVRDDGSAVIWVTFRYDGATIVPGDQGADYQHFIQQCTDDVRLFAF 68
Query: 92 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135
+R TGD MS+R KF LITW+G +V +QRAK DK LVK V+
Sbjct: 69 VRFTTGDAMSKRSKFALITWIGEDVSGLQRAKTGTDKTLVKEVV 112
>pdb|1T2L|A Chain A, Three Crystal Structures Of Human Coactosin-Like Protein
pdb|1T2L|B Chain B, Three Crystal Structures Of Human Coactosin-Like Protein
Length = 141
Score = 85.9 bits (211), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 57/104 (54%)
Query: 32 PTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGY 91
T +D ++ ++AY VR D S W FKY S I +G + F Q D R F +
Sbjct: 1 ATKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAF 60
Query: 92 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135
+R TGD S+R KF LITW+G V +QRAK DK LVK V+
Sbjct: 61 VRFTTGDAXSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVV 104
>pdb|1X67|A Chain A, Solution Structure Of The Cofilin Homology Domain Of
Hip-55 (Drebrin-Like Protein)
Length = 146
Score = 35.4 bits (80), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 7/91 (7%)
Query: 36 DSKSIKSAYEDVRSDASQTQWAVFKYQ----DSKISCTARGQSFDKFRAQFRPDERSFGY 91
+ +++ AY V ++ S T WA+F Y+ D +++ T G ++ + + + +
Sbjct: 15 NGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEG-GLEEMVEELNSGKVMYAF 73
Query: 92 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRA 122
R+ D S KF+LI W G V +++
Sbjct: 74 CRVK--DPNSGLPKFVLINWTGEGVNDVRKG 102
>pdb|3TV9|A Chain A, Crystal Structure Of Putative Peptide Maturation Protein
From Shigella Flexneri
Length = 457
Score = 28.9 bits (63), Expect = 0.99, Method: Composition-based stats.
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 28 KCVCPTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQS 74
K + T DS+ +++ D+ D TQW + Y K+ + G +
Sbjct: 309 KGLASTPFDSEGVRTERRDIIKDGILTQWLLTSYSARKLGLKSTGHA 355
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 25.8 bits (55), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 29 CVCPTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQ---SFDKFRAQFRPD 85
+ TL+ +S++ A +D+R S+ KI T G+ ++ + +F +
Sbjct: 2 AISGVTLE-ESVRGAIDDLRMKKSRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTE 60
Query: 86 ERSFGYLRMMTGDEMSRRLKFLLITWV 112
+ + D S+R K +LI W+
Sbjct: 61 KPCYVAFDFEYNDAGSKREKLILIQWI 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.135 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,741,640
Number of Sequences: 62578
Number of extensions: 129752
Number of successful extensions: 367
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 359
Number of HSP's gapped (non-prelim): 12
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)