Query psy17893
Match_columns 143
No_of_seqs 117 out of 416
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 16:50:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3655|consensus 99.9 7.9E-27 1.7E-31 201.6 9.6 110 29-140 2-114 (484)
2 PF00241 Cofilin_ADF: Cofilin/ 99.9 6.1E-24 1.3E-28 154.6 9.2 101 38-139 1-106 (127)
3 cd00013 ADF Actin depolymerisa 99.9 5.2E-23 1.1E-27 150.4 10.6 104 36-140 5-113 (132)
4 smart00102 ADF Actin depolymer 99.9 2.8E-21 6.1E-26 141.4 9.6 102 38-140 1-107 (127)
5 PLN03216 actin depolymerizing 99.8 5.4E-21 1.2E-25 143.7 10.0 111 29-140 5-121 (141)
6 PTZ00152 cofilin/actin-depolym 99.7 8.4E-17 1.8E-21 118.7 8.7 100 33-141 4-108 (122)
7 KOG1735|consensus 99.6 6.3E-15 1.4E-19 111.5 8.6 106 34-140 5-121 (146)
8 KOG1747|consensus 98.4 9E-07 2E-11 74.3 6.5 96 37-139 10-113 (342)
9 KOG1747|consensus 98.3 5.6E-06 1.2E-10 69.6 10.2 127 5-136 148-282 (342)
10 KOG1736|consensus 97.2 0.001 2.3E-08 49.6 6.2 99 36-134 10-116 (143)
11 PF08756 YfkB: YfkB-like domai 55.3 16 0.00035 28.0 3.3 47 33-83 11-59 (153)
12 COG1725 Predicted transcriptio 50.0 19 0.00041 26.7 2.9 45 24-73 36-80 (125)
13 PF15580 Imm33: Immunity prote 28.6 40 0.00088 23.6 1.7 37 44-82 48-86 (90)
14 cd06927 RNAP_L L subunit of Ar 22.1 2.6E+02 0.0056 18.9 4.7 38 58-95 3-44 (83)
15 cd06398 PB1_Joka2 The PB1 doma 20.5 2.5E+02 0.0054 19.4 4.4 63 19-82 4-73 (91)
16 smart00262 GEL Gelsolin homolo 20.3 44 0.00094 22.1 0.5 29 107-135 36-64 (90)
17 PLN02311 chalcone isomerase 20.0 82 0.0018 26.3 2.2 42 5-48 134-176 (271)
No 1
>KOG3655|consensus
Probab=99.94 E-value=7.9e-27 Score=201.61 Aligned_cols=110 Identities=34% Similarity=0.592 Sum_probs=105.1
Q ss_pred eccccccChHHHHHHHHHHHcCCCCccEEEEEeeCC--eEEEeeecC-CHHHHHhccCCCceEEEEEEeEeCCCCcceee
Q psy17893 29 CVCPTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDS--KISCTARGQ-SFDKFRAQFRPDERSFGYLRMMTGDEMSRRLK 105 (143)
Q Consensus 29 ~~m~~~~~~~~i~~A~~~Vr~d~~~~nWilf~y~~~--~l~l~~~G~-Gl~El~~~L~dd~v~Ygl~Rv~~~d~~s~r~K 105 (143)
|+|.+..+..+|++||+.|++|.+.++|+||+|+|+ .|.+.++|. |++||.+.|..++++||++||. |.++++.|
T Consensus 2 ~~l~~~~~~aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~s~~~~~~e~~~df~~~kv~yg~~rv~--D~~s~l~K 79 (484)
T KOG3655|consen 2 MPLNTTTHGAEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAGSGEGGLEEFLGDFDSGKVMYGFCRVK--DPMSGLPK 79 (484)
T ss_pred CcccccccHHHHHHHHHHhhccCCCceeEEEeecCCccceeeeccccccHHHHhhhcccCceeEEEEEec--CcccCCcc
Confidence 788899999999999999999999999999999997 678888888 8999999999999999999997 99999999
Q ss_pred EEEEEeecCCcccccceeeeecHHHHHhhccCCcc
Q psy17893 106 FLLITWVGCEVGVIQRAKVSIDKALVKSVITFKFK 140 (143)
Q Consensus 106 fVfI~WiGe~V~~~~Kar~s~hk~~Vk~~~~~yh~ 140 (143)
||||+|||++|+.++||++++|+..|+++|++||-
T Consensus 80 fvLI~W~GE~vp~~Rka~~ath~a~v~~~lkg~hV 114 (484)
T KOG3655|consen 80 FVLINWIGEGVPVLRKAKCATHKALVKNFLKGFHV 114 (484)
T ss_pred eEEEEecCCccHHHhhhhhcchHHHHHHHhhcceE
Confidence 99999999999999999999999999999999994
No 2
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=99.90 E-value=6.1e-24 Score=154.63 Aligned_cols=101 Identities=27% Similarity=0.419 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEeeCC--eEEEeeec--C-CHHHHHhccCCCceEEEEEEeEeCCCCcceeeEEEEEee
Q psy17893 38 KSIKSAYEDVRSDASQTQWAVFKYQDS--KISCTARG--Q-SFDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFLLITWV 112 (143)
Q Consensus 38 ~~i~~A~~~Vr~d~~~~nWilf~y~~~--~l~l~~~G--~-Gl~El~~~L~dd~v~Ygl~Rv~~~d~~s~r~KfVfI~Wi 112 (143)
|+|.+||++++.+++ ++|++|+|+++ .|++..+| . +++||.++|++++++|+++|+....+++.+.|+|||.||
T Consensus 1 ~e~~~~~~~~~~~~~-~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~~~~~~k~vfI~w~ 79 (127)
T PF00241_consen 1 DECKAAFQELKSKKS-TRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHKGSRRSKLVFIYWC 79 (127)
T ss_dssp HHHHHHHHHHHTTTS-CSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEETTSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCC-ceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeecccCCCCceEEEEEEe
Confidence 689999999999876 99999999986 79999998 4 799999999999999999999966568899999999999
Q ss_pred cCCcccccceeeeecHHHHHhhccCCc
Q psy17893 113 GCEVGVIQRAKVSIDKALVKSVITFKF 139 (143)
Q Consensus 113 Ge~V~~~~Kar~s~hk~~Vk~~~~~yh 139 (143)
|+++|+..||.|++|++.|++.|+++|
T Consensus 80 P~~~~vk~km~yas~k~~l~~~l~~~~ 106 (127)
T PF00241_consen 80 PDNAPVKEKMLYASSKASLKKKLGGIH 106 (127)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHCTTEE
T ss_pred cCCccHHHhhhhHHhHHHHHHHhCCce
Confidence 999999999999999999999999977
No 3
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=99.89 E-value=5.2e-23 Score=150.41 Aligned_cols=104 Identities=26% Similarity=0.386 Sum_probs=95.5
Q ss_pred ChHHHHHHHHHHHcCCCCccEEEEEeeC--CeEEEeeecC---CHHHHHhccCCCceEEEEEEeEeCCCCcceeeEEEEE
Q psy17893 36 DSKSIKSAYEDVRSDASQTQWAVFKYQD--SKISCTARGQ---SFDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFLLIT 110 (143)
Q Consensus 36 ~~~~i~~A~~~Vr~d~~~~nWilf~y~~--~~l~l~~~G~---Gl~El~~~L~dd~v~Ygl~Rv~~~d~~s~r~KfVfI~ 110 (143)
-++++.+||++++.++ ..+|++|+|++ ++|++.++|. +++||+++|++++++|+++|+....+++.+.|+|||.
T Consensus 5 i~~e~~~a~~~~~~~~-~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~~~~~~k~vfI~ 83 (132)
T cd00013 5 VSDECKEAFEELKSGK-KTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTEGSKKSKIVFIY 83 (132)
T ss_pred ECHHHHHHHHHHHhCC-ceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCCCccccCEEEEE
Confidence 3689999999999875 68999999998 4899999988 6999999999999999999998655578899999999
Q ss_pred eecCCcccccceeeeecHHHHHhhccCCcc
Q psy17893 111 WVGCEVGVIQRAKVSIDKALVKSVITFKFK 140 (143)
Q Consensus 111 WiGe~V~~~~Kar~s~hk~~Vk~~~~~yh~ 140 (143)
|||+++++..||.|++|++.+++.++++|+
T Consensus 84 w~P~~a~~k~km~yas~k~~l~~~l~~~~~ 113 (132)
T cd00013 84 WSPETAPVKSKMLYASSKAALKRELVGIQV 113 (132)
T ss_pred ECCCCCChhhhhhhHHHHHHHHHhcCCceE
Confidence 999999999999999999999999998865
No 4
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=99.85 E-value=2.8e-21 Score=141.40 Aligned_cols=102 Identities=19% Similarity=0.279 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHcCCCCccEEEEEeeCC--eEEEeeecC---CHHHHHhccCCCceEEEEEEeEeCCCCcceeeEEEEEee
Q psy17893 38 KSIKSAYEDVRSDASQTQWAVFKYQDS--KISCTARGQ---SFDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFLLITWV 112 (143)
Q Consensus 38 ~~i~~A~~~Vr~d~~~~nWilf~y~~~--~l~l~~~G~---Gl~El~~~L~dd~v~Ygl~Rv~~~d~~s~r~KfVfI~Wi 112 (143)
++|.+||++++.++ ..+|++|.++++ +|+|..+|. +++||++.|++++++|+++|+....+++++.|+|||.||
T Consensus 1 ~~~~~~~~~~~~~~-~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~~~~~~k~vfI~w~ 79 (127)
T smart00102 1 EDCKEAFNELKKKR-KHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTEESKKSKIVFIFWS 79 (127)
T ss_pred ChHHHHHHHHHcCC-CceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccCCCccccEEEEEEC
Confidence 47899999999865 489999999874 799988873 699999999999999999999965556889999999999
Q ss_pred cCCcccccceeeeecHHHHHhhccCCcc
Q psy17893 113 GCEVGVIQRAKVSIDKALVKSVITFKFK 140 (143)
Q Consensus 113 Ge~V~~~~Kar~s~hk~~Vk~~~~~yh~ 140 (143)
|+++++..||.|++|+..+++.|+++|.
T Consensus 80 P~~a~~~~km~yas~k~~l~~~l~~~~~ 107 (127)
T smart00102 80 PDGAPVKSKMLYASSKDTLKKELGGIQV 107 (127)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCceE
Confidence 9999999999999999999999998774
No 5
>PLN03216 actin depolymerizing factor; Provisional
Probab=99.85 E-value=5.4e-21 Score=143.67 Aligned_cols=111 Identities=14% Similarity=0.261 Sum_probs=97.4
Q ss_pred eccccccChHHHHHHHHHHHcCCCCccEEEEEeeCC--eEEEeeecC---CHHHHHhccCCCceEEEEEEeE-eCCCCcc
Q psy17893 29 CVCPTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDS--KISCTARGQ---SFDKFRAQFRPDERSFGYLRMM-TGDEMSR 102 (143)
Q Consensus 29 ~~m~~~~~~~~i~~A~~~Vr~d~~~~nWilf~y~~~--~l~l~~~G~---Gl~El~~~L~dd~v~Ygl~Rv~-~~d~~s~ 102 (143)
|+++..--+++|.++|++++..+ ..+|++|.++++ .|+|..+|. +++||.+.|++++++|+++|+. ..++++.
T Consensus 5 m~~SGi~v~~~c~~~f~~lk~~k-~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~ 83 (141)
T PLN03216 5 MATTGMWVTDECKNSFMEMKWKK-VHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCR 83 (141)
T ss_pred ecCCCCeeCHHHHHHHHHHHhCC-CceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCc
Confidence 55666667999999999999753 479999999874 688877653 7999999999999999999998 4666788
Q ss_pred eeeEEEEEeecCCcccccceeeeecHHHHHhhccCCcc
Q psy17893 103 RLKFLLITWVGCEVGVIQRAKVSIDKALVKSVITFKFK 140 (143)
Q Consensus 103 r~KfVfI~WiGe~V~~~~Kar~s~hk~~Vk~~~~~yh~ 140 (143)
+.|+|||.|||+++++..||.|+++|..+++.|++.++
T Consensus 84 ~~klvFI~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~ 121 (141)
T PLN03216 84 KSKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHY 121 (141)
T ss_pred ccCEEEEEECCCCCCHHHHHHHHHHHHHHHHHhcCCeE
Confidence 99999999999999999999999999999999998653
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=99.70 E-value=8.4e-17 Score=118.69 Aligned_cols=100 Identities=8% Similarity=0.172 Sum_probs=88.8
Q ss_pred cccChHHHHHHHHHHHcCCCCccEEEEEeeCCeEEEeeecC--CHHHHHhccCCCc---eEEEEEEeEeCCCCcceeeEE
Q psy17893 33 TTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQ--SFDKFRAQFRPDE---RSFGYLRMMTGDEMSRRLKFL 107 (143)
Q Consensus 33 ~~~~~~~i~~A~~~Vr~d~~~~nWilf~y~~~~l~l~~~G~--Gl~El~~~L~dd~---v~Ygl~Rv~~~d~~s~r~KfV 107 (143)
...-+++|.++|++++..+ ..+|++|.+++++|+|..+|+ .++||++.|++++ |+|++++.. .|++
T Consensus 4 Gi~v~de~~~~f~~lk~~k-~~r~iifkI~~~~Ivv~~~~~~~~~~e~~~~L~~~~~~~crY~vyd~~--------~klv 74 (122)
T PTZ00152 4 GIRVNDNCVTEFNNMKIRK-TCRWIIFVIENCEIIIHSKGATTTLTELVGSIDKNDKIQCAYVVFDAV--------NKIH 74 (122)
T ss_pred CcCcCHHHHHHHHHHhcCC-cceEEEEEEcCcEEEEEecCCCCCHHHHHHhccccCCCCceEEEEccC--------CCEE
Confidence 3445899999999999754 589999999887899988888 6999999999988 999999873 4799
Q ss_pred EEEeecCCcccccceeeeecHHHHHhhccCCccc
Q psy17893 108 LITWVGCEVGVIQRAKVSIDKALVKSVITFKFKF 141 (143)
Q Consensus 108 fI~WiGe~V~~~~Kar~s~hk~~Vk~~~~~yh~~ 141 (143)
||.|||+++++..||.|++.|..+++.+++-.++
T Consensus 75 FI~w~Pd~a~ik~KMlYASsK~~l~~~l~Gi~~~ 108 (122)
T PTZ00152 75 FFMYARESSNSRDRMTYASSKQALLKKIEGVNVL 108 (122)
T ss_pred EEEECCCCCChHHhhhhHhHHHHHHHHhcchhHH
Confidence 9999999999999999999999999999877665
No 7
>KOG1735|consensus
Probab=99.59 E-value=6.3e-15 Score=111.49 Aligned_cols=106 Identities=17% Similarity=0.296 Sum_probs=91.8
Q ss_pred ccChHHHHHHHHHHHcCCCCccEEEEEeeCC--eEEEeeecC---CHHHHHhccC---CCceEEEEEEeEeC--CC-Ccc
Q psy17893 34 TLDSKSIKSAYEDVRSDASQTQWAVFKYQDS--KISCTARGQ---SFDKFRAQFR---PDERSFGYLRMMTG--DE-MSR 102 (143)
Q Consensus 34 ~~~~~~i~~A~~~Vr~d~~~~nWilf~y~~~--~l~l~~~G~---Gl~El~~~L~---dd~v~Ygl~Rv~~~--d~-~s~ 102 (143)
...+|+|..++++++..+ ...+++|..+++ .+.+...|+ .+++|..+|+ +++|+||+++++.. -. +++
T Consensus 5 v~Vsde~~~~F~elk~kk-~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g~~~ 83 (146)
T KOG1735|consen 5 VAVSDECKKVFNELKVKK-RKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESGNCK 83 (146)
T ss_pred eEecHHHHHHHHHHHhhc-ceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeeccccce
Confidence 345899999999999954 799999999885 577776676 6999999999 99999999999932 22 557
Q ss_pred eeeEEEEEeecCCcccccceeeeecHHHHHhhccCCcc
Q psy17893 103 RLKFLLITWVGCEVGVIQRAKVSIDKALVKSVITFKFK 140 (143)
Q Consensus 103 r~KfVfI~WiGe~V~~~~Kar~s~hk~~Vk~~~~~yh~ 140 (143)
+.|++||+|+|+.+|...||.|++.++++++.|++-++
T Consensus 84 ~~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~Gi~~ 121 (146)
T KOG1735|consen 84 KSKIFFIAWSPDTAPVKSKMIYASSKDALKRELTGIQH 121 (146)
T ss_pred eeeEEEEEECCCccchhhheeehhhHHHHhhhccCcee
Confidence 89999999999999999999999999999999987654
No 8
>KOG1747|consensus
Probab=98.37 E-value=9e-07 Score=74.28 Aligned_cols=96 Identities=17% Similarity=0.288 Sum_probs=73.6
Q ss_pred hHHHHHHHHHHHcCCCCccEEEEEeeCCeEEEee----ecC---CHHHHHhc-cCCCceEEEEEEeEeCCCCcceeeEEE
Q psy17893 37 SKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTA----RGQ---SFDKFRAQ-FRPDERSFGYLRMMTGDEMSRRLKFLL 108 (143)
Q Consensus 37 ~~~i~~A~~~Vr~d~~~~nWilf~y~~~~l~l~~----~G~---Gl~El~~~-L~dd~v~Ygl~Rv~~~d~~s~r~KfVf 108 (143)
.+++.+++++-++. ..+=+...+++.++.+.. +++ .|++++.- |.+.+.+|.|||.. ++.++++|
T Consensus 10 ~e~l~~~l~~~~~~--k~R~ikIvI~nEql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrld-----s~~~~w~l 82 (342)
T KOG1747|consen 10 TEALKKFLNEAKNG--KLRLIKIVIENEQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLD-----SKNAEWLL 82 (342)
T ss_pred HHHHHHHHHhcccC--ceEEEEEEEecccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeec-----CCCccEEE
Confidence 45677777776664 356666666665555533 333 57887766 46689999999985 55669999
Q ss_pred EEeecCCcccccceeeeecHHHHHhhccCCc
Q psy17893 109 ITWVGCEVGVIQRAKVSIDKALVKSVITFKF 139 (143)
Q Consensus 109 I~WiGe~V~~~~Kar~s~hk~~Vk~~~~~yh 139 (143)
|+|+||++++.+||.|++.++.+++-|.+-|
T Consensus 83 Is~vPD~apVR~KMLYAsTrATlkrefG~~~ 113 (342)
T KOG1747|consen 83 ISWVPDNAPVRQKMLYASTRATLKREFGGAY 113 (342)
T ss_pred EEECCCCChHHHHHHHHHHHHHHHHHhccce
Confidence 9999999999999999999999999998644
No 9
>KOG1747|consensus
Probab=98.32 E-value=5.6e-06 Score=69.58 Aligned_cols=127 Identities=13% Similarity=0.107 Sum_probs=99.6
Q ss_pred chhhhHHHHhhhhhhhhCCCCCce---eccccccChHHHHHHHHHHHcCCCCccEEEEEeeC--CeEEEeeecC--CHHH
Q psy17893 5 ELERDLISIMSDLIDMSVPMTPRK---CVCPTTLDSKSIKSAYEDVRSDASQTQWAVFKYQD--SKISCTARGQ--SFDK 77 (143)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~---~~m~~~~~~~~i~~A~~~Vr~d~~~~nWilf~y~~--~~l~l~~~G~--Gl~E 77 (143)
|.|+--|.+-.-+.+....++.|+ .+|+ -++...+|.+++.+.+ .|++.|.++- .+|.+..+-. .+.|
T Consensus 148 EeEl~ei~~~e~~t~~~~~~kh~tl~Gva~p---i~~~a~kAl~~L~~~~--~n~vql~ID~~nE~I~l~~t~~~~e~sd 222 (342)
T KOG1747|consen 148 EEELKEINKNEVLTEIHTSPKHQTLQGVAFP---IDRNAEKALQDLKSSK--LNYVQLSIDLENETIQLSQTDTCTEPSD 222 (342)
T ss_pred HHHHHHHHHHHHHHhhccCcceeeccceeec---ccHHHHHHHHHHHhhc--cceEEEEeccccceeeeeccCCCCChHH
Confidence 444444555455667778888754 5555 4677789999998865 7999999984 4799988887 8999
Q ss_pred HHhccCCCceEEEEEEeEeCCCCcceeeEEEEEeecC-CcccccceeeeecHHHHHhhcc
Q psy17893 78 FRAQFRPDERSFGYLRMMTGDEMSRRLKFLLITWVGC-EVGVIQRAKVSIDKALVKSVIT 136 (143)
Q Consensus 78 l~~~L~dd~v~Ygl~Rv~~~d~~s~r~KfVfI~WiGe-~V~~~~Kar~s~hk~~Vk~~~~ 136 (143)
|...++.|..+|.++++.-..++....+.+||-=||. ++++..||.|++.|+-.-+.++
T Consensus 223 L~s~vP~d~prY~ff~~~ht~eGD~~es~~FIYS~P~~~~sVKeRMlYSScK~~fLd~~k 282 (342)
T KOG1747|consen 223 LPSRVPRDGPRYHFFLFKHTHEGDPLESIVFIYSMPGYGCSVKERMLYSSCKSGFLDSLK 282 (342)
T ss_pred hhhhcCCCCCceEEEecccccCCCCceeEEEEEECCCCCcchhhhhHhhhcchhHHHHHH
Confidence 9999999999999999882222223568999999999 9999999999999977665554
No 10
>KOG1736|consensus
Probab=97.24 E-value=0.001 Score=49.62 Aligned_cols=99 Identities=11% Similarity=0.099 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHcC-CCCccE-EEEEeeCC--eEEEeeec---CCHHHHHhccCCCceEEEEEEeE-eCCCCcceeeEE
Q psy17893 36 DSKSIKSAYEDVRSD-ASQTQW-AVFKYQDS--KISCTARG---QSFDKFRAQFRPDERSFGYLRMM-TGDEMSRRLKFL 107 (143)
Q Consensus 36 ~~~~i~~A~~~Vr~d-~~~~nW-ilf~y~~~--~l~l~~~G---~Gl~El~~~L~dd~v~Ygl~Rv~-~~d~~s~r~KfV 107 (143)
.+++..+.+...|-. +...+. ++.+.+.. .|++.+-- -..+|+.+.|++.+++|.++-.. ..+++....-++
T Consensus 10 i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~DGr~stPL~ 89 (143)
T KOG1736|consen 10 IGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTDDGRVSTPLC 89 (143)
T ss_pred eCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECcccccCCcccccEE
Confidence 356777778776654 333444 66777654 46665421 26789999999999999999887 456677788899
Q ss_pred EEEeecCCcccccceeeeecHHHHHhh
Q psy17893 108 LITWVGCEVGVIQRAKVSIDKALVKSV 134 (143)
Q Consensus 108 fI~WiGe~V~~~~Kar~s~hk~~Vk~~ 134 (143)
||-|.|.++++-.+|.|+..+.-+.+.
T Consensus 90 ~Iyw~P~~~~~e~~MmYAgak~~~~~~ 116 (143)
T KOG1736|consen 90 FIYWSPVGCKPEQQMMYAGAKNMLVQT 116 (143)
T ss_pred EEEecCccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988776654
No 11
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=55.33 E-value=16 Score=27.95 Aligned_cols=47 Identities=11% Similarity=0.181 Sum_probs=33.7
Q ss_pred cccChHHHHHHHHHHHcCCCCccEEEEEeeCCeEEEeeecC--CHHHHHhccC
Q psy17893 33 TTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQ--SFDKFRAQFR 83 (143)
Q Consensus 33 ~~~~~~~i~~A~~~Vr~d~~~~nWilf~y~~~~l~l~~~G~--Gl~El~~~L~ 83 (143)
..++-+++++|+..+.+-..+--|++|| +|-+..-.. .=.+|++.|.
T Consensus 11 ~vLsL~e~r~aIh~LLd~Rd~~~WMLFG----TLPfy~Cs~~eeD~~Ll~RL~ 59 (153)
T PF08756_consen 11 EVLSLDEMREAIHRLLDIRDPNVWMLFG----TLPFYPCSDDEEDLALLKRLR 59 (153)
T ss_pred ccCCHHHHHHHHHHHHhccCCCeeEEec----ccccccCCCCHHHHHHHHHHH
Confidence 3457899999999998877788999998 566655444 2334555553
No 12
>COG1725 Predicted transcriptional regulators [Transcription]
Probab=49.99 E-value=19 Score=26.70 Aligned_cols=45 Identities=11% Similarity=0.186 Sum_probs=34.3
Q ss_pred CCCceeccccccChHHHHHHHHHHHcCCCCccEEEEEeeCCeEEEeeecC
Q psy17893 24 MTPRKCVCPTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQ 73 (143)
Q Consensus 24 ~~~~~~~m~~~~~~~~i~~A~~~Vr~d~~~~nWilf~y~~~~l~l~~~G~ 73 (143)
|++|-|++...+|.--++.||+++...+ ++...-|.-..|...|.
T Consensus 36 PSvRelA~~~~VNpnTv~raY~eLE~eG-----~i~t~rg~G~fV~~~~~ 80 (125)
T COG1725 36 PSVRELAKDLGVNPNTVQRAYQELEREG-----IVETKRGKGTFVTEDAK 80 (125)
T ss_pred CcHHHHHHHhCCCHHHHHHHHHHHHHCC-----CEEEecCeeEEEcCCch
Confidence 5788899999999999999999998864 45555555455555544
No 13
>PF15580 Imm33: Immunity protein 33
Probab=28.64 E-value=40 Score=23.63 Aligned_cols=37 Identities=22% Similarity=0.425 Sum_probs=26.5
Q ss_pred HHHHHcCCCCccEEEEEeeCCeEEEeeecC--CHHHHHhcc
Q psy17893 44 YEDVRSDASQTQWAVFKYQDSKISCTARGQ--SFDKFRAQF 82 (143)
Q Consensus 44 ~~~Vr~d~~~~nWilf~y~~~~l~l~~~G~--Gl~El~~~L 82 (143)
++.+..+.+..+|+.+..++.. +.|.|. .|.+++..|
T Consensus 48 ~~~i~~~~~~~DW~~~~v~~~~--F~g~ggp~~L~~iL~~F 86 (90)
T PF15580_consen 48 FEWIIIERSENDWIHCKVEDGK--FEGAGGPSNLEEILHIF 86 (90)
T ss_pred cceEeccCCCCCeEEEEEEccE--EEEecCHHHHHHHHHHH
Confidence 3444555557899999998866 566666 688887765
No 14
>cd06927 RNAP_L L subunit of Archaeal RNA polymerase. The archaeal L subunit of RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The assembly of the two largest archaeal RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of the archaeal D/L heterodimer.
Probab=22.08 E-value=2.6e+02 Score=18.92 Aligned_cols=38 Identities=11% Similarity=0.214 Sum_probs=26.3
Q ss_pred EEEeeCCeEEEeeecC--CHHHHHhc--cCCCceEEEEEEeE
Q psy17893 58 VFKYQDSKISCTARGQ--SFDKFRAQ--FRPDERSFGYLRMM 95 (143)
Q Consensus 58 lf~y~~~~l~l~~~G~--Gl~El~~~--L~dd~v~Ygl~Rv~ 95 (143)
+++.+++.+.+.=.|+ .+--++.+ +.+..|-||-|++.
T Consensus 3 vi~~~~n~~~~~i~~EDHTlgNlLr~~L~~~~~V~fAgY~vp 44 (83)
T cd06927 3 VIEKEDNELELEIEGEDHTLLNLLKEELLRDPGVKVASYDIE 44 (83)
T ss_pred EEEcCCCEEEEEEeCCCchHHHHHHHHHhcCCCeEEEEeecC
Confidence 3455566566655665 66665544 57799999999997
No 15
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=20.48 E-value=2.5e+02 Score=19.38 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=43.3
Q ss_pred hhhCCCCCceecccc-----ccChHHHHHHHHHHHcCCCCccEEEEEeeCC--eEEEeeecCCHHHHHhcc
Q psy17893 19 DMSVPMTPRKCVCPT-----TLDSKSIKSAYEDVRSDASQTQWAVFKYQDS--KISCTARGQSFDKFRAQF 82 (143)
Q Consensus 19 ~~~~~~~~~~~~m~~-----~~~~~~i~~A~~~Vr~d~~~~nWilf~y~~~--~l~l~~~G~Gl~El~~~L 82 (143)
-+++....|+.+++. +++-+.+.+-+.+..+-....++.+ .|.+. ..+...+-+.++|-++..
T Consensus 4 Kv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l~~~~~~~l-~Y~Dedgd~V~l~~D~DL~~a~~~~ 73 (91)
T cd06398 4 KVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSLSPDADLSL-TYTDEDGDVVTLVDDNDLTDAIQYF 73 (91)
T ss_pred EEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCCCCCCcEEE-EEECCCCCEEEEccHHHHHHHHHHH
Confidence 345667777777774 5777888888888776543355555 99774 666667776777766664
No 16
>smart00262 GEL Gelsolin homology domain. Gelsolin/severin/villin homology domain. Calcium-binding and actin-binding. Both intra- and extracellular domains.
Probab=20.30 E-value=44 Score=22.06 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=22.6
Q ss_pred EEEEeecCCcccccceeeeecHHHHHhhc
Q psy17893 107 LLITWVGCEVGVIQRAKVSIDKALVKSVI 135 (143)
Q Consensus 107 VfI~WiGe~V~~~~Kar~s~hk~~Vk~~~ 135 (143)
....|+|.++++..|.++..+...+.+..
T Consensus 36 ~iyvW~G~~as~~ek~~A~~~a~~~~~~~ 64 (90)
T smart00262 36 EIYVWVGKKSSQDEKKKAAELAVELDDTL 64 (90)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 56889999999999988777666665433
No 17
>PLN02311 chalcone isomerase
Probab=20.01 E-value=82 Score=26.33 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=30.9
Q ss_pred chhhhHHHHhhhhhhhhCCCCCceeccccccChHHHHHHHHH-HH
Q psy17893 5 ELERDLISIMSDLIDMSVPMTPRKCVCPTTLDSKSIKSAYED-VR 48 (143)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~~~i~~A~~~-Vr 48 (143)
||+.|. +...|+|++-++.+.| ++|...++...+.+|+++ ++
T Consensus 134 eL~~~~-~ff~dIi~a~~eK~ir-I~~iR~v~g~~~~~A~~eg~~ 176 (271)
T PLN02311 134 EIQRDS-SLFSSIFQAPAEKSLQ-IVLVRDVDGKTFWDALDEAIS 176 (271)
T ss_pred HHhcch-HHHHHHhcCCcceEEE-EEEEecCCHHHHHHHHHHHHH
Confidence 444444 6678899888776554 456778899999999987 54
Done!