RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17893
(143 letters)
>gnl|CDD|200438 cd11282, ADF_coactosin_like, Coactosin-like members of the ADF
homology domain family. Actin depolymerization
factor/cofilin-like domains (ADF domains) are present in
a family of essential eukaryotic actin regulatory
proteins. Many of these proteins enhance the turnover
rate of actin and interact with actin monomers as well
as actin filaments. The function of coactosins is not
well understood. They appear to interfere with the
capping of actin filaments in Dictyostelium, and may not
be able to bind monomeric globular actin. A role for
coactosins as chaperones stabilizing 5-lipoxygenase
(5LO) has been suggested; 5LO plays a crucial role in
leukotriene synthesis.
Length = 114
Score = 114 bits (288), Expect = 4e-34
Identities = 44/99 (44%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Query: 39 SIKSAYEDVRSDASQTQWAVFKYQDS-KISCTARGQSF-DKFRAQFRPDERSFGYLRMMT 96
I+ AY DVRSD S T W + Y+ S + G D+ +AQ DE FGY+R+
Sbjct: 1 EIREAYNDVRSDVSDTNWVLLGYESSNTLVLRGSGSGGIDELKAQLPDDEVLFGYVRITL 60
Query: 97 GDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135
GD S+R KF+ ITW+G V V++RAKVS+ K VK V+
Sbjct: 61 GDGESKRSKFVFITWIGENVSVLRRAKVSVHKGDVKEVL 99
>gnl|CDD|214516 smart00102, ADF, Actin depolymerisation factor/cofilin -like
domains. Severs actin filaments and binds to actin
monomers.
Length = 127
Score = 48.0 bits (115), Expect = 5e-08
Identities = 17/99 (17%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 41 KSAYEDVRSD--ASQTQWAVFKYQDSKI--SCTARGQSFDKFRAQFRPDERSFGYLRMMT 96
K A+ +++ S + + K + + + S+D+F + DE +
Sbjct: 4 KEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKF 63
Query: 97 GDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135
E S++ K + I W V + + K +K +
Sbjct: 64 TTEESKKSKIVFIFWSPDGAPVKSKMLYASSKDTLKKEL 102
>gnl|CDD|200437 cd11281, ADF_drebrin_like, ADF homology domain of drebrin and
actin-binding protein 1 (abp1). Actin depolymerization
factor/cofilin-like domains (ADF domains) are present in
a family of essential eukaryotic actin regulatory
proteins. Many of these proteins enhance the turnover
rate of actin and interact with actin monomers as well
as actin filaments. Abp1 and drebrin (developmentally
regulated brain protein) are multidomain proteins with
an N-terminal ADF homology domain and one or more
C-terminal SH3 domains. They have been shown to interact
with polymeric F-actin, but not with monomeric G-actin,
and do not appear to promote the disassembly of actin
filaments. Drebrin rather stabilizes actin filaments by
inducing changes in the helical twist and may promote or
interfere with the interactions of other proteins with
actin filaments.
Length = 136
Score = 48.0 bits (115), Expect = 7e-08
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 37 SKSIKSAYEDVRSDASQTQWAVFKYQDS----KISCTARGQSFDKFRAQFRPDERSFGYL 92
S I +AYEDV S T WA+F Y+ K++ T G ++ +F + +G+
Sbjct: 7 SPEILAAYEDVVDGKSSTDWALFTYEGKSNDLKVADTGDG-GLEELVEEFSDGKVQYGFA 65
Query: 93 RM-MTGDEMSRRLKFLLITWVG 113
R+ + KF+LI W G
Sbjct: 66 RVKDPNSGLP---KFVLINWCG 84
>gnl|CDD|143992 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type actin-binding
protein. Severs actin filaments and binds to actin
monomers.
Length = 127
Score = 37.7 bits (88), Expect = 3e-04
Identities = 16/103 (15%), Positives = 40/103 (38%), Gaps = 10/103 (9%)
Query: 41 KSAYEDVRSDASQTQWAVFKYQDSK-----ISCTARGQSFDKFRAQFRPDERSFGYLRMM 95
K+++ +++ + + +FK K G S+D+F + E + +
Sbjct: 4 KASFNELKKR-KKHNYIIFKIDKDKDQIVVEQVGDTGDSYDEFVEELPERECRYAVYDVE 62
Query: 96 TGDEMSRRLKFLLITWVGCEVG--VIQRAKVSIDKALVKSVIT 136
+ S++ K + ++W G V + + K +K +
Sbjct: 63 YTTDGSKKSKIVFVSW--SPDGAPVKSKMLYASSKDALKRALG 103
>gnl|CDD|200435 cd00013, ADF_gelsolin, Actin depolymerization factor/cofilin- and
gelsolin-like domains. Actin depolymerization
factor/cofilin-like domains are present in a family of
essential eukaryotic actin regulatory proteins; these
proteins enhance the turnover rate of actin and interact
with actin monomers as well as actin filaments.
Length = 97
Score = 37.1 bits (86), Expect = 4e-04
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 7/84 (8%)
Query: 56 WAVFKYQDSK-----ISCTARGQSFDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFLLIT 110
W +FK K S A D+F + D+ + + R +R KF+ I+
Sbjct: 2 WVLFKVDAKKEEIVVGSTGAGFL--DEFLEELPEDDPRYAFYRFKYPHSDDKRSKFVFIS 59
Query: 111 WVGCEVGVIQRAKVSIDKALVKSV 134
W+ V + Q+ + +K +K
Sbjct: 60 WIPDGVSIKQKMVYATNKQTLKEA 83
>gnl|CDD|234404 TIGR03931, T7SS_Rv3446c, type VII secretion-associated protein,
Rv3446c family, C-terminal domain. Members of this
protein family occur as part of the ESX-4 cluster of
type VII secretion system (T7SS) proteins in
Mycobacterium tuberculosis and in similar T7SS clusters
in other Actinobacteria genera, including
Corynebacterium, Nocardia, Rhodococcus, and
Saccharopolyspora. This model describes the
better-conserved C-terminal region [Protein fate,
Protein and peptide secretion and trafficking].
Length = 172
Score = 31.3 bits (71), Expect = 0.11
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 43 AYEDVRSDASQTQWAVF---KYQDSKISCTARGQSFDKFRAQFR 83
Y + D S W V+ +Q S + C +R + + RA R
Sbjct: 121 TYRETPGDGSTVLWHVWVDDGHQVS-VGCQSRPGANEVVRAACR 163
>gnl|CDD|185689 cd02180, GH16_fungal_KRE6_glucanase, Saccharomyces cerevisiae KRE6
and related glucanses, member of glycosyl hydrolase
family 16. KRE6 is a Saccharomyces cerevisiae glucanase
that participates in the synthesis of beta-1,6-glucan, a
major structural component of the cell wall. It is a
golgi membrane protein required for normal
beta-1,6-glucan levels in the cell wall. KRE6 is
closely realted to laminarinase, a glycosyl hydrolase
family 16 member that hydrolyzes 1,3-beta-D-glucosidic
linkages in 1,3-beta-D-glucans such as laminarins,
curdlans, paramylons, and pachymans, with very limited
action on mixed-link (1,3-1,4-)-beta-D-glucans.
Length = 295
Score = 28.8 bits (65), Expect = 0.79
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 10/48 (20%)
Query: 61 YQDSKISCTAR---------GQSFDKFRAQFRPDERSFGYLRMMTGDE 99
+Q + ISC R G F + ++RPD+ GY+ DE
Sbjct: 188 FQQA-ISCVTRLNDSWYPGNGNEFQTYGFEYRPDDEDDGYITWFVDDE 234
>gnl|CDD|217532 pfam03395, Pox_P4A, Poxvirus P4A protein.
Length = 889
Score = 28.7 bits (64), Expect = 1.3
Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 13/108 (12%)
Query: 12 SIMSDLIDMSVPMTP-RKCVCPTTLDSKSIKSAYEDVRSDASQTQWAVFKYQD-SKISCT 69
S +SD + MTP R C+ P + K++ S +V + + T F + S I
Sbjct: 405 STLSDALAAG--MTPDRVCILPRVVSGKTVPSLVSEVLNSINITSSREFPKKRNSYIMHI 462
Query: 70 ARGQSFDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFLLITWVGCEVG 117
G S + F R F LR++ +K +++T+ G + G
Sbjct: 463 --GLSEEGFM-------RFFQLLRLLGARPPETAIKEVVMTYAGLKEG 501
>gnl|CDD|146396 pfam03735, ENT, ENT domain. This presumed domain is named after
Emsy N Terminus (ENT). Emsy is a protein that is
amplified in breast cancer and interacts with BRCA2. The
N terminus of this protein is found to be similar to
other vertebrate and plant proteins of unknown function.
This domain has a completely conserved histidine residue
that may be functionally important.
Length = 74
Score = 25.7 bits (57), Expect = 4.4
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 58 VFKYQDSKISCTARGQSFDKFRAQFR-PDERSFGYLRMMTGDEMSRRLK 105
F+ Q +S + + + R + R DE LR + DE ++
Sbjct: 19 AFRAQGDALS-WEKEELLTELRKELRISDEEHRELLRRVNSDERLLTIR 66
>gnl|CDD|188915 cd09516, SAM_sec23ip-like, SAM domain of sec23ip-like subfamily.
SAM (sterile alpha motif) domain of Sec23ip-like (Sec23
interacting protein) subfamily is a potential
protein-protein interaction domain. This group of
proteins includes Sec23ip and DDHD2 proteins. All of
them contain at least two domains: a SAM domain and a
predicted metal-binding domain. For mammalian DDHD2
members of this group, phospholipase activity has been
demonstrated. Sec23ip proteins of this group interact
with Sec23 proteins via an N-terminal proline-rich
region. Members of this subfamily are involved in
organization of ER/Golgi intermediate compartment.
Length = 69
Score = 24.7 bits (54), Expect = 7.1
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 15 SDLIDMSVPMTPRK 28
SDL +M +PM PRK
Sbjct: 44 SDLKEMGIPMGPRK 57
>gnl|CDD|178170 PLN02555, PLN02555, limonoid glucosyltransferase.
Length = 480
Score = 25.9 bits (57), Expect = 9.1
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 5 ELERDLISIMSDLIDMSVPMTPRKCVCPTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDS 64
ELE+++I MS L P K V P +K+ S DV+ D S+ ++ DS
Sbjct: 224 ELEKEIIDYMSKL-------CPIKPVGPLFKMAKTPNS---DVKGDISKPADDCIEWLDS 273
Query: 65 K 65
K
Sbjct: 274 K 274
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.135 0.398
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,902,288
Number of extensions: 571822
Number of successful extensions: 494
Number of sequences better than 10.0: 1
Number of HSP's gapped: 492
Number of HSP's successfully gapped: 16
Length of query: 143
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 56
Effective length of database: 7,078,804
Effective search space: 396413024
Effective search space used: 396413024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.6 bits)