RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17893
(143 letters)
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo
sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A
1tmw_A 1wnj_A 1udm_A 1wm4_A
Length = 141
Score = 103 bits (257), Expect = 2e-29
Identities = 45/103 (43%), Positives = 58/103 (56%)
Query: 33 TTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGYL 92
T +D ++ ++AY VR D S W FKY S I +G + F Q D R F ++
Sbjct: 2 TKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAFV 61
Query: 93 RMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135
R TGD MS+R KF LITW+G V +QRAK DK LVK V+
Sbjct: 62 RFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVV 104
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding
protein, SH3P7, MABP1, T-cell lymphocyte signaling and
regulation; NMR {Homo sapiens}
Length = 146
Score = 77.8 bits (191), Expect = 3e-19
Identities = 22/106 (20%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 33 TTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSK--ISCTARGQ-SFDKFRAQFRPDERSF 89
+ + +++ AY V ++ S T WA+F Y+ + I G+ ++ + + +
Sbjct: 12 LSRNGPALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGEGGLEEMVEELNSGKVMY 71
Query: 90 GYLRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVI 135
+ R+ D S KF+LI W G V +++ + + + S +
Sbjct: 72 AFCRVK--DPNSGLPKFVLINWTGEGVNDVRKGACASHVSTMASFL 115
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX
researc for structural genomics, NYSGXRC, structural
genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP:
d.109.1.2
Length = 141
Score = 75.4 bits (185), Expect = 2e-18
Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 4/102 (3%)
Query: 33 TTLDSKSIKSAYEDV-RSDASQTQWAVFKYQDSK-ISCTARGQSFDKFRAQFRPDERSFG 90
T S+ I + Y + R T W + K + G SF F F + +G
Sbjct: 8 YTTHSREIDAEYLKIVRGSDPDTTWLIISPNAKKEYEPESTGSSFHDFLQLFDETKVQYG 67
Query: 91 YLRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVK 132
R+ S K ++I W + RA + + A V
Sbjct: 68 LARV--SPPGSDVEKIIIIGWCPDSAPLKTRASFAANFAAVA 107
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A
{Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Length = 137
Score = 48.8 bits (116), Expect = 2e-08
Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 6/105 (5%)
Query: 37 SKSIKSAYEDVRSDASQTQWAVFKYQDSKIS-----CTARGQSFDKFRAQFRPDERSFGY 91
S + +++ Q ++ FK S +++ F++Q + +
Sbjct: 6 SDDCVQKFNELKLG-HQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAI 64
Query: 92 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVIT 136
+ +R K I W + + + K +K +
Sbjct: 65 FDYEFQVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLV 109
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A
{Schizosaccharomyces pombe}
Length = 137
Score = 45.7 bits (108), Expect = 3e-07
Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 5/104 (4%)
Query: 37 SKSIKSAYEDVRSDASQTQWAVFKYQDSK----ISCTARGQSFDKFRAQFRPDERSFGYL 92
S A+++++ ++ VFK D+K + + + FD F + +
Sbjct: 9 SPECLEAFQELKLG-KSLRYVVFKMNDTKTEIVVEKKSTDKDFDTFLGDLPEKDCRYAIY 67
Query: 93 RMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVIT 136
R K + I+W + + S K ++ T
Sbjct: 68 DFEFNLGEGVRNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFT 111
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A
{Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A
1qpv_A
Length = 143
Score = 44.6 bits (105), Expect = 9e-07
Identities = 15/106 (14%), Positives = 38/106 (35%), Gaps = 7/106 (6%)
Query: 37 SKSIKSAYEDVRSDASQTQWAVFKYQDSKISC----TARGQSFDKFRAQFRPDERSFGYL 92
+ +A+ D++ + ++ +F D+K T+ S+D F + ++ +
Sbjct: 9 ADESLTAFNDLKLG-KKYKFILFGLNDAKTEIVVKETSTDPSYDAFLEKLPENDCLYAIY 67
Query: 93 RM--MTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVIT 136
+R K + TW V + + K ++ +
Sbjct: 68 DFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALN 113
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin,
solution structure, hormone; NMR {Leishmania donovani}
PDB: 2kvk_A
Length = 144
Score = 40.8 bits (95), Expect = 3e-05
Identities = 16/110 (14%), Positives = 40/110 (36%), Gaps = 7/110 (6%)
Query: 37 SKSIKSAYEDVRSDASQTQWAVFKYQDSK-----ISCTARGQSFDKFRAQFRPDERSFGY 91
+S++ A +D+R ++++ + R ++ + +F ++ +
Sbjct: 9 EESVRGAIDDLRMK--KSRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVA 66
Query: 92 LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVITFKFKF 141
D S+R K +LI W+ ++ S + + SV
Sbjct: 67 FDFEYNDAGSKREKLILIQWIPDTARPREKMMYSASRDALSSVSEGYLPI 116
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR
{Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A
3j0s_M
Length = 174
Score = 27.9 bits (61), Expect = 0.94
Identities = 16/126 (12%), Positives = 35/126 (27%), Gaps = 1/126 (0%)
Query: 11 ISIMSDLIDMSVPMTPRKCVCPTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTA 70
+ + ++ + M RKC P + K K+ + +D K
Sbjct: 14 VQVADEVCRIFYDMKVRKCSTPEEIK-KRKKAVIFCLSADKKCIIVEEGKEILVGDVGVT 72
Query: 71 RGQSFDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKAL 130
F F + + + SR+ + + W + + + K
Sbjct: 73 ITDPFKHFVGMLPEKDCRYALYDASFETKESRKEELMFFLWAPELAPLKSKMIYASSKDA 132
Query: 131 VKSVIT 136
+K
Sbjct: 133 IKKKFQ 138
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.135 0.398
Gapped
Lambda K H
0.267 0.0748 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,046,397
Number of extensions: 104668
Number of successful extensions: 295
Number of sequences better than 10.0: 1
Number of HSP's gapped: 292
Number of HSP's successfully gapped: 13
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (23.8 bits)