RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17893
         (143 letters)



>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp)
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 130

 Score = 93.8 bits (233), Expect = 3e-26
 Identities = 45/104 (43%), Positives = 58/104 (55%)

Query: 33  TTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTARGQSFDKFRAQFRPDERSFGYL 92
           T +D ++ ++AY  VR D S   W  FKY  S I    +G  +  F  Q   D R F ++
Sbjct: 2   TKIDKEACRAAYNLVRDDGSAVIWVTFKYDGSTIVPGEQGAEYQHFIQQCTDDVRLFAFV 61

Query: 93  RMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVIT 136
           R  TGD MS+R KF LITW+G  V  +QRAK   DK LVK V+ 
Sbjct: 62  RFTTGDAMSKRSKFALITWIGENVSGLQRAKTGTDKTLVKEVVQ 105


>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein
           abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
           4932]}
          Length = 139

 Score = 67.2 bits (164), Expect = 8e-16
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 4/99 (4%)

Query: 37  SKSIKSAYEDV-RSDASQTQWAVFKYQDSK-ISCTARGQSFDKFRAQFRPDERSFGYLRM 94
           S+ I + Y  + R     T W +      K     + G SF  F   F   +  +G  R+
Sbjct: 10  SREIDAEYLKIVRGSDPDTTWLIISPNAKKEYEPESTGSSFHDFLQLFDETKVQYGLARV 69

Query: 95  MTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKS 133
                 S   K ++I W      +  RA  + + A V +
Sbjct: 70  --SPPGSDVEKIIIIGWCPDSAPLKTRASFAANFAAVAN 106


>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
           {Acanthamoeba castellanii, actophorin [TaxId: 5755]}
          Length = 134

 Score = 51.4 bits (123), Expect = 7e-10
 Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 6/105 (5%)

Query: 37  SKSIKSAYEDVRSDASQTQWAVFKYQDSKISCT-----ARGQSFDKFRAQFRPDERSFGY 91
           S      + +++    Q ++  FK   S              +++ F++Q    +  +  
Sbjct: 5   SDDCVQKFNELKLG-HQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAI 63

Query: 92  LRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSVIT 136
                  +  +R K   I W      +  +   +  K  +K  + 
Sbjct: 64  FDYEFQVDGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLV 108


>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF)
           {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]}
          Length = 166

 Score = 35.8 bits (82), Expect = 6e-04
 Identities = 14/121 (11%), Positives = 35/121 (28%), Gaps = 22/121 (18%)

Query: 37  SKSIKSAYEDVRSDASQT--------QWAVFKYQD----------SKISCTARGQS---- 74
           S  +   + D++   S T        +  +F   +           +I     GQ+    
Sbjct: 8   SDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDP 67

Query: 75  FDKFRAQFRPDERSFGYLRMMTGDEMSRRLKFLLITWVGCEVGVIQRAKVSIDKALVKSV 134
           +  F       +  +         + S++   + I W      +  +   +  K  +K  
Sbjct: 68  YATFVKMLPDKDCRYALYDATYETKESKKEDLVFIFWAPESAPLKSKMIYASSKDAIKKK 127

Query: 135 I 135
           +
Sbjct: 128 L 128


>d2ie7a1 a.65.1.1 (A:2-319) Annexin V {Rat (Rattus norvegicus)
           [TaxId: 10116]}
          Length = 318

 Score = 26.1 bits (57), Expect = 1.5
 Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 4/75 (5%)

Query: 44  YEDVRSDASQTQWAVFK---YQDSKISCTARGQSFDKFRAQFRPDERSFGY-LRMMTGDE 99
              V  DA     A        + K       +S    R  F       G+ +      E
Sbjct: 166 DAQVELDAQALFQAGELKWGTDEEKFITILGTRSVSHLRRVFDKYMTISGFQIEETIDRE 225

Query: 100 MSRRLKFLLITWVGC 114
            S  L+ LL+  V  
Sbjct: 226 TSGNLENLLLAVVKS 240


>d1n7oa2 b.24.1.1 (A:815-890) Hyaluronate lyase {Streptococcus
          pneumoniae [TaxId: 1313]}
          Length = 76

 Score = 24.1 bits (52), Expect = 3.4
 Identities = 8/16 (50%), Positives = 9/16 (56%)

Query: 50 DASQTQWAVFKYQDSK 65
          DA Q  W + KY DS 
Sbjct: 15 DAKQGVWGIVKYDDSV 30


>d1f1sa3 b.24.1.1 (A:912-984) Hyaluronate lyase {Streptococcus
          agalactiae [TaxId: 1311]}
          Length = 73

 Score = 24.1 bits (52), Expect = 3.4
 Identities = 5/16 (31%), Positives = 9/16 (56%)

Query: 50 DASQTQWAVFKYQDSK 65
          D +   WAV K+ + +
Sbjct: 16 DKNSQTWAVIKHDNQE 31


>d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 166

 Score = 24.3 bits (52), Expect = 6.4
 Identities = 14/72 (19%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 11  ISIMSDLIDMSVPMTPRKCVCPTTLDSKSIKSAYEDVRSDASQTQWAVFKYQDSKISCTA 70
           IS ++D+ ++ V M  R+     + ++       +D +    +    VF+ +D+++   +
Sbjct: 94  ISYIADIGNIVVLMARRRIPRSNSQENVEASHPSQDGKRQ-YKMICHVFESEDAQLIAQS 152

Query: 71  RGQSFDKFRAQF 82
            GQ+F     +F
Sbjct: 153 IGQAFSVAYQEF 164


>d1hc1a3 b.1.18.3 (A:399-653) Arthropod hemocyanin, C-terminal
           domain {Spiny lobster (Panulirus interruptus) [TaxId:
           6735]}
          Length = 255

 Score = 23.6 bits (51), Expect = 9.3
 Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 8/31 (25%)

Query: 61  YQDSKISCTARGQSFDKFRAQFRPDERSFGY 91
           Y  +   C   G+++        PD R  GY
Sbjct: 204 YGGTHAQCGVHGEAY--------PDNRPLGY 226


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 497,242
Number of extensions: 20189
Number of successful extensions: 76
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 13
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 48 (22.3 bits)