BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17897
(391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XSD|C Chain C, Crystal Structure Of The Dimeric Oct-6 (Pou3f1) Pou Domain
Bound To Palindromic More Dna
Length = 164
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/167 (46%), Positives = 99/167 (59%), Gaps = 7/167 (4%)
Query: 224 GLQHPDTDT-DPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFE 282
G +H D D +LE FA++FKQRRIKLG TQADVG AL L SQ+TICRFE
Sbjct: 1 GGEHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLY---GNVFSQTTICRFE 57
Query: 283 SLTLSHNNMIALKPIXXXXXXXXXXXXKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSL 342
+L LS NM LKP+ + + + G K++KRTSI K +L
Sbjct: 58 ALQLSFKNMCKLKPLLNKWLEETDSSSGSP---TNLDKIAAQGRKRKKRTSIEVGVKGAL 114
Query: 343 EAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389
E++F P+PS +I +A+ L L+K VVRVWFCN+RQK+KRM AA
Sbjct: 115 ESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 161
>pdb|1O4X|A Chain A, Ternary Complex Of The Dna Binding Domains Of The Oct1 And
Sox2 Transcription Factors With A 19mer Oligonucleotide
From The Hoxb1 Regulatory Element
Length = 167
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 97/163 (59%), Gaps = 7/163 (4%)
Query: 227 HPDTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286
H + +D ELE FA+ FKQRRIKLG TQ DVG A+ KL G SQ+TI RFE+L L
Sbjct: 3 HMEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-NDFSQTTISRFEALNL 59
Query: 287 SHNNMIALKPIXXX----XXXXXXXXXKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSL 342
S NM LKP+ + ++P + E+++KRTSI + +L
Sbjct: 60 SFKNMAKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSERRKKRTSIETNIRVAL 119
Query: 343 EAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
E F +P+ E+I IA++L+++K V+RVWFCN+RQK+KR+
Sbjct: 120 EKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRI 162
>pdb|1CQT|A Chain A, Crystal Structure Of A Ternary Complex Containing An Oca-B
Peptide, The Oct-1 Pou Domain, And An Octamer Element
pdb|1CQT|B Chain B, Crystal Structure Of A Ternary Complex Containing An Oca-B
Peptide, The Oct-1 Pou Domain, And An Octamer Element
Length = 163
Score = 119 bits (299), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 68/158 (43%), Positives = 93/158 (58%), Gaps = 7/158 (4%)
Query: 232 TDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNM 291
+D ELE FA+ FKQRRIKLG TQ DVG A+ KL G SQ+TI RFE+L LS NM
Sbjct: 7 SDLEELEQFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-NDFSQTTISRFEALNLSFKNM 63
Query: 292 IALKPIXXXXXXXXXXXXKNKRRDPDAPSVLPAGE----KKRKRTSIAAPEKRSLEAYFA 347
LKP+ + + P E +++KRTSI + +LE F
Sbjct: 64 CKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFL 123
Query: 348 VQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
+P+ E+I IA++L+++K V+RVWFCN+RQK+KR+
Sbjct: 124 ENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRI 161
>pdb|1OCT|C Chain C, Crystal Structure Of The Oct-1 Pou Domain Bound To An
Octamer Site: Dna Recognition With Tethered Dna-Binding
Modules
Length = 156
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 68/157 (43%), Positives = 92/157 (58%), Gaps = 7/157 (4%)
Query: 233 DPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMI 292
D ELE FA+ FKQRRIKLG TQ DVG A+ KL G SQ+TI RFE+L LS NM
Sbjct: 1 DLEELEQFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-NDFSQTTISRFEALNLSFKNMC 57
Query: 293 ALKPIXXXXXXXXXXXXKNKRRDPDAPSVLPAGE----KKRKRTSIAAPEKRSLEAYFAV 348
LKP+ + + P E +++KRTSI + +LE F
Sbjct: 58 KLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFLE 117
Query: 349 QPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
+P+ E+I IA++L+++K V+RVWFCN+RQK+KR+
Sbjct: 118 NQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRI 154
>pdb|1AU7|A Chain A, Pit-1 MutantDNA COMPLEX
pdb|1AU7|B Chain B, Pit-1 MutantDNA COMPLEX
Length = 146
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/160 (44%), Positives = 94/160 (58%), Gaps = 24/160 (15%)
Query: 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIAL 294
R LE FA FK RRIKLG TQ +VG+ALA + G SQ+TICRFE+L LS N L
Sbjct: 3 RALEQFANEFKVRRIKLGYTQTNVGEALA--AVHG-SEFSQTTICRFENLQLSFKNACKL 59
Query: 295 KPIXXXXXXXXXXXXKNKRRDPDAPSV-------LPAGEKKRKR-TSIAAPEKRSLEAYF 346
K I +A V + A E+KRKR T+I+ K +LE +F
Sbjct: 60 KAILSKWL-------------EEAEQVGALYNEKVGANERKRKRRTTISIAAKDALERHF 106
Query: 347 AVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386
+PS ++I +AE+L+L+K VVRVWFCN+RQ++KR+K
Sbjct: 107 GEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146
>pdb|1HF0|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Oct-1 Bound
To Dna As A Dimer
pdb|1HF0|B Chain B, Crystal Structure Of The Dna-Binding Domain Of Oct-1 Bound
To Dna As A Dimer
pdb|1GT0|C Chain C, Crystal Structure Of A PouHMGDNA TERNARY COMPLEX
Length = 159
Score = 115 bits (287), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 67/158 (42%), Positives = 92/158 (58%), Gaps = 7/158 (4%)
Query: 232 TDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNM 291
+D ELE FA+ FKQRRIKLG TQ DVG A+ KL G SQ+TI RFE+L LS NM
Sbjct: 4 SDLEELEQFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-NDFSQTTISRFEALNLSFKNM 60
Query: 292 IALKPIXXXXXXXXXXXXKNKRRDPDAPSVLPAGE----KKRKRTSIAAPEKRSLEAYFA 347
LKP+ + + P E +++KRTSI + +LE F
Sbjct: 61 SKLKPLLEKWLNDAENLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFL 120
Query: 348 VQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
+P+ E+I IA++L+++K V+RVWF N+RQK+KR+
Sbjct: 121 ENQKPTSEEITMIADQLNMEKEVIRVWFSNRRQKEKRI 158
>pdb|1E3O|C Chain C, Crystal Structure Of Oct-1 Pou Dimer Bound To More
Length = 160
Score = 114 bits (286), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 67/159 (42%), Positives = 92/159 (57%), Gaps = 8/159 (5%)
Query: 232 TDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNM 291
+D ELE FA+ FKQRRIKLG TQ DVG A+ KL G SQ+TI RFE+L LS NM
Sbjct: 4 SDLEELEQFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-NDFSQTTISRFEALNLSFKNM 60
Query: 292 IALKPIXXX-----XXXXXXXXXKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYF 346
LKP+ + ++P + +++KRTSI + +LE F
Sbjct: 61 SKLKPLLEKWLNDAEANLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSF 120
Query: 347 AVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
+P+ E I IAE+L+++K V+RVWF N+RQK+KR+
Sbjct: 121 MENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159
>pdb|3L1P|A Chain A, Pou Protein:dna Complex
pdb|3L1P|B Chain B, Pou Protein:dna Complex
Length = 155
Score = 108 bits (269), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 91/157 (57%), Gaps = 8/157 (5%)
Query: 229 DTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVG-ALSQSTICRFESLTLS 287
D +ELE FA+ KQ+RI LG TQADVG L L G SQ+TI RFE+L LS
Sbjct: 4 DMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVL----FGKVFSQTTISRFEALQLS 59
Query: 288 HNNMIALKPIXXXXXXXXXXXXKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFA 347
NM L+P+ +N + + +++ A +KRKRTSI + SLE F
Sbjct: 60 LKNMSKLRPLLEKWVEEADNN-ENLQEISKSETLVQA--RKRKRTSIENRVRWSLETMFL 116
Query: 348 VQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
P+PS ++I IA +L L+K+VVRVWF N+RQK KR
Sbjct: 117 KSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKR 153
>pdb|3D1N|I Chain I, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|J Chain J, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|K Chain K, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|L Chain L, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|M Chain M, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|N Chain N, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|O Chain O, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
pdb|3D1N|P Chain P, Structure Of Human Brn-5 Transcription Factor In Complex
With Corticotrophin-Releasing Hormone Gene Promoter
Length = 151
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/145 (34%), Positives = 77/145 (53%), Gaps = 3/145 (2%)
Query: 236 ELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALK 295
E+ FA+ FK RR+ LG+TQ VG+A + P A SQS I RFE L ++ + LK
Sbjct: 5 EIREFAKNFKIRRLSLGLTQTQVGQAXTATEGP---AYSQSAISRFEKLDITPKSAQKLK 61
Query: 296 PIXXXXXXXXXXXXKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGE 355
P+ + +++ +K+++RTS +L AYF P P+G+
Sbjct: 62 PVLEKWLNEAELRNQEGQQNLXEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQ 121
Query: 356 KIAAIAEKLDLKKNVVRVWFCNQRQ 380
+I A++L+ + VVRVWF N+RQ
Sbjct: 122 EITEXAKELNYDREVVRVWFSNRRQ 146
>pdb|1POU|A Chain A, The Solution Structure Of The Oct-1 Pou-Specific Domain
Reveals A Striking Similarity To The Bacteriophage
Lambda Repressor Dna-Binding Domain
Length = 71
Score = 70.5 bits (171), Expect = 2e-12, Method: Composition-based stats.
Identities = 39/65 (60%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 233 DPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMI 292
D ELE FA+ FKQRRIKLG TQ DVG A+ KL G SQ+TI RFE+L LS NM
Sbjct: 1 DLEELEQFAKTFKQRRIKLGFTQGDVGLAMG--KLYG-NDFSQTTISRFEALNLSFKNMC 57
Query: 293 ALKPI 297
LKP+
Sbjct: 58 KLKPL 62
>pdb|1OCP|A Chain A, Solution Structure Of Oct3 Pou-Homeodomain
Length = 67
Score = 67.8 bits (164), Expect = 1e-11, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+KRKRTSI + SLE F P+PS ++I IA +L L+K+VVRVWFCN+RQK KR
Sbjct: 8 RKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65
>pdb|1HDP|A Chain A, Solution Structure Of A Pou-Specific Homeodomain: 3d-Nmr
Studies Of Human B-Cell Transcription Factor Oct-2
Length = 63
Score = 67.4 bits (163), Expect = 1e-11, Method: Composition-based stats.
Identities = 28/59 (47%), Positives = 43/59 (72%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
+++KRTSI + +LE F +P+ E+I IAE+L ++K V+RVWFCN+RQK+KR+
Sbjct: 1 RRKKRTSIETNVRFALEKSFLANQKPTSEEILLIAEQLHMEKEVIRVWFCNRRQKEKRI 59
>pdb|1POG|A Chain A, Solution Structure Of The Oct-1 Pou-Homeo Domain
Determined By Nmr And Restrained Molecular Dynamics
Length = 67
Score = 65.9 bits (159), Expect = 4e-11, Method: Composition-based stats.
Identities = 27/59 (45%), Positives = 44/59 (74%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
+++KRTSI + +LE F +P+ E+I IA++L+++K V+RVWFCN+RQK+KR+
Sbjct: 7 RRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRI 65
>pdb|2DMQ|A Chain A, Solution Structure Of The Homeobox Domain Of LimHOMEOBOX
Protein Lhx9
Length = 80
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
KR RTS + R++++YFA+ P + + +A+K L K V++VWF N R K +R
Sbjct: 8 KRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 64
>pdb|2M34|A Chain A, Nmr Structure Of The Homeodomain Transcription Factor Gbx1
From Homo Sapiens
Length = 71
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 323 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQ 382
P G+ +R+RT+ + + LE F + S + + IA L L + V++WF N+R K
Sbjct: 3 PGGKSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKW 62
Query: 383 KRMK 386
KR+K
Sbjct: 63 KRIK 66
>pdb|2DA1|A Chain A, Solution Structure Of The First Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 70
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCN 377
KR RT I + R L YF + PS E+I +A+K L + V++ WF N
Sbjct: 8 KRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRN 57
>pdb|2K40|A Chain A, Nmr Structure Of Hesx-1 Homeodomain Double Mutant R31lE42L
Length = 67
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387
+R RT+ + LE F V P + + +A+KL+L+ + +++WF N+R K KR
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61
Query: 388 AAQ 390
+Q
Sbjct: 62 ESQ 64
>pdb|2L7F|P Chain P, Solution Structure Of The Pitx2 Homeodomain
pdb|2LKX|A Chain A, Nmr Structure Of The Homeodomain Of Pitx2 In Complex With
A Taatcc Dna Binding Site
Length = 68
Score = 39.7 bits (91), Expect = 0.003, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQK-QK 383
G ++R+RT + + + LEA F P IA +L + VRVWF N+R K +K
Sbjct: 1 GSQRRQRTHFTSQQLQELEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 60
Query: 384 RMKF 387
R +F
Sbjct: 61 REEF 64
>pdb|2L7M|P Chain P, Solution Structure Of The Pitx2 Homeodomain R24h Mutant
Length = 68
Score = 39.3 bits (90), Expect = 0.004, Method: Composition-based stats.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQK-QK 383
G ++R+RT + + + LEA F P IA +L + VRVWF N+R K +K
Sbjct: 1 GSQRRQRTHFTSQQLQELEATFQRNHYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 60
Query: 384 RMKF 387
R +F
Sbjct: 61 REEF 64
>pdb|2M0C|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Human Alx4,
Northeast Structural Genomics Consortium (Nesg) Target
Hr4490c
Length = 75
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQK-QK 383
G+K+R RT+ + + LE F P +A + DL + V+VWF N+R K +K
Sbjct: 7 GKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRK 66
Query: 384 RMKFA 388
R +F
Sbjct: 67 RERFG 71
>pdb|1BW5|A Chain A, The Nmr Solution Structure Of The Homeodomain Of The Rat
Insulin Gene Enhancer Protein Isl-1, 50 Structures
Length = 66
Score = 37.4 bits (85), Expect = 0.014, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 329 RKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
R RT + + +L +A PRP + E L V+RVWF N+R K K+
Sbjct: 5 RVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60
>pdb|2R5Y|A Chain A, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|A Chain A, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 88
Score = 37.0 bits (84), Expect = 0.019, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 312 KRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVV 371
KR +V GE KR+RTS + LE F + + IA L L + +
Sbjct: 13 KRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQI 72
Query: 372 RVWFCNQRQKQKR 384
++WF N+R K K+
Sbjct: 73 KIWFQNRRMKWKK 85
>pdb|2DA3|A Chain A, Solution Structure Of The Third Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 80
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
KR RT+I + L + + P+ + + IA ++ LKK VV+VWF N R ++++
Sbjct: 18 KRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 74
>pdb|1JGG|A Chain A, Even-Skipped Homeodomain Complexed To At-Rich Dna
pdb|1JGG|B Chain B, Even-Skipped Homeodomain Complexed To At-Rich Dna
Length = 60
Score = 36.6 bits (83), Expect = 0.022, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386
+R RT+ + LE F + S + +A +L+L ++ ++VWF N+R K KR +
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQR 60
>pdb|2VI6|A Chain A, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|B Chain B, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|C Chain C, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|D Chain D, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|E Chain E, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|F Chain F, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|G Chain G, Crystal Structure Of The Nanog Homeodomain
pdb|2VI6|H Chain H, Crystal Structure Of The Nanog Homeodomain
Length = 62
Score = 35.8 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
G K++ RT + + +L+ F Q S +++ ++ L+L V+ WF NQR K KR
Sbjct: 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60
>pdb|2CUE|A Chain A, Solution Structure Of The Homeobox Domain Of The Human
Paired Box Protein Pax-6
Length = 80
Score = 35.4 bits (80), Expect = 0.059, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+R RTS + +LE F P +A K+DL + ++VWF N+R K +R
Sbjct: 8 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRR 64
>pdb|2H1K|A Chain A, Crystal Structure Of The Pdx1 Homeodomain In Complex With
Dna
pdb|2H1K|B Chain B, Crystal Structure Of The Pdx1 Homeodomain In Complex With
Dna
Length = 63
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
G KR RT+ + LE F S + +A L+L + +++WF N+R K K+
Sbjct: 1 GSNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60
>pdb|2E19|A Chain A, Solution Structure Of The Homeobox Domain From Human
Nil-2- A Zinc Finger Protein, Transcription Factor 8
Length = 64
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 14/34 (41%), Positives = 26/34 (76%)
Query: 342 LEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWF 375
L+AY+A+ +PS E+++ IA+ ++L +VV+ WF
Sbjct: 18 LKAYYALNAQPSAEELSKIADSVNLPLDVVKKWF 51
>pdb|2L9R|A Chain A, Solution Nmr Structure Of Homeobox Domain Of Homeobox
Protein Nkx-3.1 From Homo Sapiens, Northeast Structural
Genomics Consortium Target Hr6470a
Length = 69
Score = 33.9 bits (76), Expect = 0.14, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 342 LEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAAQ 390
LE F+ Q S + A +A+ L L + V++WF N+R K KR + +++
Sbjct: 19 LERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSE 67
>pdb|2DMS|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Otx2
Length = 80
Score = 33.9 bits (76), Expect = 0.15, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQK 381
+R+RT+ + LEA FA P +A K++L ++ V+VWF N+R K
Sbjct: 8 RRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAK 61
>pdb|2DA2|A Chain A, Solution Structure Of The Second Homeobox Domain Of At-
Binding Transcription Factor 1 (Atbf1)
Length = 70
Score = 33.5 bits (75), Expect = 0.21, Method: Composition-based stats.
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 340 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
R L+ +F P ++ ++ L+L V+ VWF N RQK ++
Sbjct: 20 RVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARK 64
>pdb|3A01|B Chain B, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
pdb|3A01|F Chain F, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
Length = 67
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 17/64 (26%), Positives = 33/64 (51%)
Query: 323 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQ 382
P +++R RT+ + + LE F+ P +A K+ L + ++VWF N+R K
Sbjct: 2 PKRKQRRYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKW 61
Query: 383 KRMK 386
++ +
Sbjct: 62 RKQE 65
>pdb|1FJL|A Chain A, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|B Chain B, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
pdb|1FJL|C Chain C, Homeodomain From The Drosophila Paired Protein Bound To A
Dna Oligonucleotide
Length = 81
Score = 33.1 bits (74), Expect = 0.26, Method: Composition-based stats.
Identities = 16/66 (24%), Positives = 34/66 (51%)
Query: 319 PSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQ 378
P + +++R RT+ +A + LE F P +A++ +L + ++VWF N+
Sbjct: 10 PGIALKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNR 69
Query: 379 RQKQKR 384
R + ++
Sbjct: 70 RARLRK 75
>pdb|1B72|A Chain A, Pbx1, Homeobox Protein Hox-B1DNA TERNARY COMPLEX
Length = 97
Score = 33.1 bits (74), Expect = 0.27, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
Query: 310 KNKRRDPDAPSVLPAG--EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLK 367
K KR P V G RT+ + LE F S + IA L+L
Sbjct: 15 KVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELN 74
Query: 368 KNVVRVWFCNQRQKQKR 384
+ V++WF N+R KQK+
Sbjct: 75 ETQVKIWFQNRRMKQKK 91
>pdb|3CMY|A Chain A, Structure Of A Homeodomain In Complex With Dna
Length = 61
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
++R RT+ A + LE F P +A++ L + V+VWF N+R + ++
Sbjct: 2 QRRSRTTFTAEQLEELERAFERTHYPDIYTREELAQRAKLTEARVQVWFSNRRARWRK 59
>pdb|9ANT|A Chain A, Antennapedia Homeodomain-Dna Complex
pdb|9ANT|B Chain B, Antennapedia Homeodomain-Dna Complex
Length = 62
Score = 32.7 bits (73), Expect = 0.32, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 28/59 (47%)
Query: 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
E+KR R + + LE F + + IA L L + +++WF N+R K K+
Sbjct: 2 ERKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 60
>pdb|2KT0|A Chain A, Solution Structure Of Human Stem Cell Transcription Factor
Nanog Homeodomain Fragment
Length = 84
Score = 32.7 bits (73), Expect = 0.33, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+K++ RT ++ + L F Q S +++ ++ L+L V+ WF NQR K KR
Sbjct: 21 KKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 79
>pdb|2DMU|A Chain A, Solution Structure Of The Homeobox Domain Of Homeobox
Protein Goosecoid
Length = 70
Score = 32.7 bits (73), Expect = 0.36, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 27/57 (47%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+R RT + +LE F P +A K+ L++ V VWF N+R K +R
Sbjct: 8 RRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 64
>pdb|2LP0|A Chain A, The Solution Structure Of Homeodomain-Protein Complex
Length = 60
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
++KR + LE F + ++ +A L+L + V++WF N+R K K+M
Sbjct: 2 RKKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARVLNLTERQVKIWFQNRRMKMKKM 59
>pdb|2DA4|A Chain A, Solution Structure Of The Homeobox Domain Of The
Hypothetical Protein, Dkfzp686k21156
Length = 80
Score = 32.3 bits (72), Expect = 0.48, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 355 EKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
EKI A+A +L++ +VR W N+R+K + M
Sbjct: 40 EKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70
>pdb|1ZQ3|P Chain P, Nmr Solution Structure Of The Bicoid Homeodomain Bound To
The Consensus Dna Binding Site Taatcc
Length = 68
Score = 32.0 bits (71), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383
+R RT+ + + LE +F + ++A ++ KL L V++WF N+R++ K
Sbjct: 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHK 58
>pdb|2L7Z|A Chain A, Nmr Structure Of A13 Homedomain
Length = 73
Score = 31.6 bits (70), Expect = 0.72, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
E ++KR + + LE +A + +K I+ +L + V +WF N+R K+K++
Sbjct: 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65
>pdb|1IG7|A Chain A, Msx-1 HomeodomainDNA COMPLEX STRUCTURE
Length = 58
Score = 31.6 bits (70), Expect = 0.85, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
++ RT + +LE F + S + A + L L + V++WF N+R K KR+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58
>pdb|1PUF|A Chain A, Crystal Structure Of Hoxa9 And Pbx1 Homeodomains Bound To
Dna
Length = 77
Score = 31.6 bits (70), Expect = 0.85, Method: Composition-based stats.
Identities = 18/68 (26%), Positives = 33/68 (48%)
Query: 318 APSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCN 377
A + L A ++KR + LE F + ++ +A L+L + V++WF N
Sbjct: 4 AANWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQN 63
Query: 378 QRQKQKRM 385
+R K K++
Sbjct: 64 RRMKMKKI 71
>pdb|2LD5|A Chain A, Solution Nmr-Derived Complex Structure Of Hoxa13 Dna
Binding Domain Bound To Dna
Length = 67
Score = 31.2 bits (69), Expect = 1.0, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
++KR + + LE +A + +K I+ +L + V +WF N+R K+K++
Sbjct: 2 RKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 59
>pdb|2DA5|A Chain A, Solution Structure Of The Second Homeobox Domain Of Zinc
Fingers And Homeoboxes Protein 3 (Triple Homeobox 1
Protein)
Length = 75
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 336 APEK-RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQK 381
APE+ R+LE+ FA P P E++ + + + + + WF +R+K
Sbjct: 15 APEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKK 61
>pdb|1AKH|A Chain A, Mat A1ALPHA2DNA TERNARY COMPLEX
Length = 61
Score = 30.8 bits (68), Expect = 1.4, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 326 EKKRKRTSIAAPEKRS-LEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383
EK K S +P+ R+ LE F + + ++ +A+K + VRVWF N+R + K
Sbjct: 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>pdb|1YRN|A Chain A, Crystal Structure Of The Mata1MATALPHA2 HOMEODOMAIN
Heterodimer Bound To Dna
pdb|1F43|A Chain A, Solution Structure Of The Mata1 Homeodomain
Length = 61
Score = 30.8 bits (68), Expect = 1.5, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 326 EKKRKRTSIAAPEKRS-LEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383
EK K S +P+ R+ LE F + + ++ +A+K + VRVWF N+R + K
Sbjct: 3 EKSPKGKSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>pdb|1AHD|P Chain P, Determination Of The Nmr Solution Structure Of An
Antennapedia Homeodomain-Dna Complex
pdb|2HOA|A Chain A, Structure Determination Of The Antp(C39->s) Homeodomain
From Nuclear Magnetic Resonance Data In Solution Using A
Novel Strategy For The Structure Calculation With The
Programs Diana, Caliba, Habas And Glomsa
Length = 68
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+KR R + + LE F + + IA L L + +++WF N+R K K+
Sbjct: 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 59
>pdb|3A03|A Chain A, Crystal Structure Of Hox11l1 Homeodomain
Length = 56
Score = 30.4 bits (67), Expect = 1.7, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 332 TSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
TS + + LE F Q + + AA+A+ L + V+ WF N+R K +R
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54
>pdb|1B8I|B Chain B, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
pdb|2R5Y|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A CONSENSUS HOX-Exd
Site
pdb|2R5Z|B Chain B, Structure Of ScrEXD COMPLEX BOUND TO A DNA SEQUENCE
Derived From The Fkh Gene
Length = 63
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQ---PRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+RKR + + L YF P PS E +A K + + V WF N+R + K+
Sbjct: 2 RRKRRNFSKQASEILNEYFYSHLSNPYPSEEAKEELARKCGITVSQVSNWFGNKRIRYKK 61
>pdb|1NK2|P Chain P, VndNK-2 HomeodomainDNA COMPLEX, NMR, 20 STRUCTURES
pdb|1NK3|P Chain P, VndNK-2 HomeodomainDNA COMPLEX, NMR, MINIMIZED AVERAGE
Structure
pdb|1VND|A Chain A, VndNK-2 Protein (Homeodomain), Nmr
Length = 77
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 28/61 (45%)
Query: 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
+K+++R + LE F Q S + +A + L V++WF N R K KR
Sbjct: 8 KKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRA 67
Query: 386 K 386
+
Sbjct: 68 Q 68
>pdb|3LNQ|A Chain A, Structure Of Aristaless Homeodomain In Complex With Dna
Length = 58
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 329 RKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386
R RT+ + + LE F+ P +A K+ L + ++VWF N+R K ++ +
Sbjct: 1 RYRTTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58
>pdb|1FTZ|A Chain A, Nuclear Magnetic Resonance Solution Structure Of The Fushi
Tarazu Homeodomain From Drosophila And Comparison With
The Antennapedia Homeodomain
Length = 70
Score = 30.0 bits (66), Expect = 2.3, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 27/59 (45%)
Query: 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+ KR R + + LE F + + IA L L + +++WF N+R K K+
Sbjct: 2 DSKRTRQTYTRYQTLELEKEFHFNRYITRRRRIDIANALSLSERQIKIWFQNRRMKSKK 60
>pdb|2CRA|A Chain A, Solution Structure Of The Homeobox Domain Of Human Homeo
Box B13
Length = 70
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
++KR + + R LE +A + +K I+ L + + +WF N+R K+K+
Sbjct: 8 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64
>pdb|1ZTR|A Chain A, Solution Structure Of Engrailed Homeodomain L16a Mutant
Length = 61
Score = 30.0 bits (66), Expect = 2.4, Method: Composition-based stats.
Identities = 14/60 (23%), Positives = 32/60 (53%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
G++KR RT+ ++ + + F + + ++ +L L + +++WF N+R K +R
Sbjct: 1 GDEKRPRTAFSSEQLARAKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIRR 60
>pdb|1FTT|A Chain A, Thyroid Transcription Factor 1 Homeodomain (Rattus
Norvegicus)
Length = 68
Score = 30.0 bits (66), Expect = 2.5, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
++++R + + LE F Q S + +A + L V++WF N R K KR
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKR 59
>pdb|1HOM|A Chain A, Determination Of The Three-Dimensional Structure Of The
Antennapedia Homeodomain From Drosophila In Solution By
1h Nuclear Magnetic Resonance Spectroscopy
Length = 68
Score = 29.6 bits (65), Expect = 3.4, Method: Composition-based stats.
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+KR R + + LE F + + IA L L + +++WF N+R K K+
Sbjct: 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKK 59
>pdb|1HDD|C Chain C, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|1HDD|D Chain D, Crystal Structure Of An Engrailed Homeodomain-Dna Complex
At 2.8 Angstroms Resolution: A Framework For
Understanding Homeodomain-Dna Interactions
pdb|2JWT|A Chain A, Solution Structure Of Engrailed Homeodomain Wt
Length = 61
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 14/59 (23%), Positives = 32/59 (54%)
Query: 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
++KR RT+ ++ + L+ F + + ++ +L L + +++WF N+R K K+
Sbjct: 2 DEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKK 60
>pdb|1LE8|A Chain A, Crystal Structure Of The Mata1MATALPHA2-3a Heterodimer
Bound To Dna Complex
Length = 53
Score = 29.3 bits (64), Expect = 3.9, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 28/53 (52%)
Query: 331 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383
++SI+ + LE F + + ++ +A+K + VRVWF N+R + K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>pdb|1P7J|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52e
pdb|1P7J|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52e
Length = 59
Score = 29.3 bits (64), Expect = 4.0, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+KR RT+ ++ + L+ F + + ++ +L L + +++WF N+R K K+
Sbjct: 1 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNERAKIKK 58
>pdb|4GLP|A Chain A, The Crystal Structure Of Soluble Human Cd14 Reveals A Bent
Solenoid With A Hydrophobic Amino-terminal Pocket
Length = 310
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 221 MPPGLQHPDTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICR 280
+ P L+ D D DPR+ + + RR+ +G Q A L VGAL R
Sbjct: 41 LEPFLKRVDADADPRQYADTVKALRVRRLTVGAAQVP-----AQLL---VGALRVLAYSR 92
Query: 281 FESLTL 286
+ LTL
Sbjct: 93 LKELTL 98
>pdb|3DL7|A Chain A, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 538
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 341 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 388
>pdb|1Q83|A Chain A, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Syn Complex
pdb|1Q83|B Chain B, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Syn Complex
pdb|1Q84|A Chain A, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Anti Complex
pdb|1Q84|B Chain B, Crystal Structure Of The Mouse Acetylcholinesterase-Tz2pa6
Anti Complex
Length = 580
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 377 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 424
>pdb|2JGE|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
Length = 533
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 337 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 384
>pdb|3DL7|B Chain B, Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
Length = 534
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 337 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 384
>pdb|2JGJ|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 535
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 337 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 384
>pdb|2JGE|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Methamidophos
pdb|2JGJ|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Methamidophos
Length = 536
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 340 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 387
>pdb|2C0P|A Chain A, Aged Form Of Mouse Acetylcholinesterase Inhibited By Tabun
pdb|2C0P|B Chain B, Aged Form Of Mouse Acetylcholinesterase Inhibited By Tabun
pdb|2C0Q|A Chain A, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun
pdb|2C0Q|B Chain B, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun
pdb|2JEY|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Hlo-7
pdb|2JEY|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Hlo-7
pdb|2WHR|A Chain A, Crystal Structure Of Acetylcholinesterase In Complex With
K027
pdb|2WHR|B Chain B, Crystal Structure Of Acetylcholinesterase In Complex With
K027
pdb|4A23|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Racemic
C5685
pdb|4A23|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Racemic
C5685
pdb|4ARA|A Chain A, Mus Musculus Acetylcholinesterase In Complex With
(r)-c5685 At 2.5 A Resolution.
pdb|4ARA|B Chain B, Mus Musculus Acetylcholinesterase In Complex With
(r)-c5685 At 2.5 A Resolution.
pdb|4ARB|A Chain A, Mus Musculus Acetylcholinesterase In Complex With
(s)-c5685 At 2.25 A Resolution.
pdb|4ARB|B Chain B, Mus Musculus Acetylcholinesterase In Complex With
(s)-c5685 At 2.25 A Resolution
Length = 548
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 346 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 393
>pdb|2WHP|B Chain B, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin And In Complex With Hi-6
Length = 548
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 346 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 393
>pdb|2JGF|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Fenamiphos
pdb|2JGF|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Fenamiphos
pdb|2JGI|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGI|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Non-Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGK|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Fenamiphos
pdb|2JGK|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Fenamiphos
pdb|2JGL|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Vx And Sarin
pdb|2JGL|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Vx And Sarin
pdb|2JGM|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JGM|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Inhibited
By Aged Diisopropyl Fluorophosphate (Dfp)
pdb|2JEZ|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Hlo-7
pdb|2JEZ|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Hlo-7
pdb|2JF0|A Chain A, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Ortho-7
pdb|2JF0|B Chain B, Mus Musculus Acetylcholinesterase In Complex With Tabun
And Ortho-7
pdb|3DL4|A Chain A, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
pdb|3DL4|B Chain B, Non-Aged Form Of Mouse Acetylcholinesterase Inhibited By
Tabun- Update
pdb|2WHP|A Chain A, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin And In Complex With Hi-6
pdb|2WHQ|A Chain A, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin (Aged) In Complex With Hi-6
pdb|2WHQ|B Chain B, Crystal Structure Of Acetylcholinesterase, Phosphonylated
By Sarin (Aged) In Complex With Hi-6
pdb|2WU3|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Hi-6
pdb|2WU3|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Hi-6
pdb|2WU4|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Ortho-7
pdb|2WU4|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In Complex
With Fenamiphos And Ortho-7
pdb|2Y2U|A Chain A, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Vx-Update
pdb|2Y2U|B Chain B, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Vx-Update
pdb|2Y2V|A Chain A, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Sarin-Update
pdb|2Y2V|B Chain B, Nonaged Form Of Mouse Acetylcholinesterase Inhibited By
Sarin-Update
Length = 548
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 346 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 393
>pdb|1C2B|A Chain A, Electrophorus Electricus Acetylcholinesterase
Length = 540
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 343 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 390
>pdb|4A16|A Chain A, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|B Chain B, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|C Chain C, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
pdb|4A16|D Chain D, Structure Of Mouse Acetylcholinesterase Complex With
Huprine Derivative
Length = 545
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 343 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 390
>pdb|2XUD|A Chain A, Crystal Structure Of The Y337a Mutant Of Mouse
Acetylcholinesterase
pdb|2XUD|B Chain B, Crystal Structure Of The Y337a Mutant Of Mouse
Acetylcholinesterase
pdb|2XUH|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (10
Mth)
pdb|2XUH|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (10
Mth)
pdb|2XUI|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1 Wk)
pdb|2XUI|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1 Wk)
pdb|2XUJ|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1
Mth)
pdb|2XUJ|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (1
Mth)
pdb|2XUK|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (10
Mth)
pdb|2XUK|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Syn Complex (10
Mth)
pdb|2XUO|A Chain A, Crystal Structure Of Mache-Y337a Mutant In Complex With
Soaked Tz2pa6 Anti Inhibitor
pdb|2XUO|B Chain B, Crystal Structure Of Mache-Y337a Mutant In Complex With
Soaked Tz2pa6 Anti Inhibitor
pdb|2XUP|A Chain A, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Syn Inhibitor
pdb|2XUP|B Chain B, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Syn Inhibitor
pdb|2XUQ|A Chain A, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Anti-Syn Inhibitors
pdb|2XUQ|B Chain B, Crystal Structure Of The Mache-Y337a Mutant In Complex
With Soaked Tz2pa6 Anti-Syn Inhibitors
Length = 543
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 346 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 393
>pdb|1MAA|A Chain A, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|B Chain B, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|C Chain C, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
pdb|1MAA|D Chain D, Mouse Acetylcholinesterase Catalytic Domain, Glycosylated
Protein
Length = 547
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 346 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 393
>pdb|1N5M|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Gallamine Complex
pdb|1N5M|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Gallamine Complex
Length = 541
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 346 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 393
>pdb|2HA4|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Acetylcholine
pdb|2HA4|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Acetylcholine
pdb|2HA5|A Chain A, Crystal Structure Of Mutant S203a Of Acetylcholinesterase
Complexed With Acetylthiocholine
pdb|2HA5|B Chain B, Crystal Structure Of Mutant S203a Of Acetylcholinesterase
Complexed With Acetylthiocholine
pdb|2HA6|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Succinylcholine
pdb|2HA6|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Succinylcholine
pdb|2HA7|A Chain A, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Butyrylthiocholine
pdb|2HA7|B Chain B, Crystal Structure Of Mutant S203a Of Mouse
Acetylcholinesterase Complexed With Butyrylthiocholine
Length = 543
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 346 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 393
>pdb|1P3W|B Chain B, X-Ray Crystal Structure Of E. Coli Iscs
pdb|1P3W|A Chain A, X-Ray Crystal Structure Of E. Coli Iscs
Length = 404
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 34 ASSTPTLPTLKHDMMYHHGMNGTHGGPNGRPHQMSHHGMDGLEM 77
+++TP P + MM M+GT G P R H+ + +++
Sbjct: 10 SATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDI 53
>pdb|1KU6|A Chain A, Fasciculin 2-Mouse Acetylcholinesterase Complex
Length = 549
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 346 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 393
>pdb|1MAH|A Chain A, Fasciculin2-Mouse Acetylcholinesterase Complex
pdb|1J06|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase In The Apo
Form
pdb|1J06|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase In The Apo
Form
pdb|1J07|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Decidium Complex
pdb|1J07|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Decidium Complex
pdb|1N5R|A Chain A, Crystal Structure Of The Mouse
Acetylcholinesterase-Propidium Complex
pdb|1N5R|B Chain B, Crystal Structure Of The Mouse
Acetylcholinesterase-Propidium Complex
pdb|2H9Y|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With M-(N,N, N-Trimethylammonio)trifluoroacetophenone
pdb|2H9Y|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With M-(N,N, N-Trimethylammonio)trifluoroacetophenone
pdb|2HA0|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With 4- Ketoamyltrimethylammonium
pdb|2HA0|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With 4- Ketoamyltrimethylammonium
pdb|2HA2|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Succinylcholine
pdb|2HA2|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Succinylcholine
pdb|2HA3|A Chain A, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Choline
pdb|2HA3|B Chain B, Crystal Structure Of Mouse Acetylcholinesterase Complexed
With Choline
pdb|2GYU|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Hi-6
pdb|2GYU|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Hi-6
pdb|2GYV|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Ortho-7
pdb|2GYV|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Ortho-7
pdb|2GYW|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Obidoxime
pdb|2GYW|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Obidoxime
pdb|2WLS|A Chain A, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Amts13
pdb|2WLS|B Chain B, Crystal Structure Of Mus Musculus Acetylcholinesterase In
Complex With Amts13
pdb|4BC0|A Chain A, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|B Chain B, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|C Chain C, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC0|D Chain D, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 12-h Soak): Cresyl-phosphoserine Adduct
pdb|4BC1|A Chain A, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
pdb|4BC1|B Chain B, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
pdb|4BC1|C Chain C, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
pdb|4BC1|D Chain D, Structure Of Mouse Acetylcholinesterase Inhibited By Cbdp
( 30-min Soak): Cresyl-saligenin-phosphoserine Adduct
Length = 543
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 346 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 393
>pdb|2XUF|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Mth)
pdb|2XUF|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Mth)
pdb|2XUG|A Chain A, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Wk)
pdb|2XUG|B Chain B, Crystal Structure Of Mache-Y337a-Tz2pa6 Anti Complex (1
Wk)
Length = 544
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 346 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 393
>pdb|1C2O|A Chain A, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|B Chain B, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|C Chain C, Electrophorus Electricus Acetylcholinesterase
pdb|1C2O|D Chain D, Electrophorus Electricus Acetylcholinesterase
Length = 539
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 10 FSGLNDGLLSRAEALAAVDIGKHSASSTPTLPTLKHDMMYHHGMNGTH 57
FS N+ L+SRA+ LA V IG AS + H + H + TH
Sbjct: 342 FSKDNESLISRAQFLAGVRIGVPQASDLAAEAVVLHYTDWLHPEDPTH 389
>pdb|3RKQ|A Chain A, Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna
pdb|3RKQ|B Chain B, Nkx2.5 Homeodomain Dimer Bound To Anf-242 Dna
Length = 58
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383
+++ R + + LE F Q S + +A L L V++WF N+R K K
Sbjct: 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58
>pdb|1B8I|A Chain A, Structure Of The Homeotic UbxEXDDNA TERNARY COMPLEX
Length = 81
Score = 28.9 bits (63), Expect = 5.4, Method: Composition-based stats.
Identities = 15/60 (25%), Positives = 28/60 (46%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
G ++R R + + LE F + + +A L L + +++WF N+R K K+
Sbjct: 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKK 77
>pdb|3HDD|A Chain A, Engrailed Homeodomain Dna Complex
pdb|3HDD|B Chain B, Engrailed Homeodomain Dna Complex
Length = 60
Score = 28.9 bits (63), Expect = 5.5, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+KR RT+ ++ + L+ F + + ++ +L L + +++WF N+R K K+
Sbjct: 1 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNKRAKIKK 58
>pdb|4EGC|A Chain A, Crystal Structure Of Mbp-fused Human Six1 Bound To Human
Eya2 Eya Domain
Length = 559
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 313 RRDPDAPSVLPAGEKKRKRTSIAAPEKRS--LEAYFAVQPRPSGEKIAAIAEKLDLKKNV 370
RR P + GE+ TS EK L ++A P PS + +AE L
Sbjct: 482 RRKFPLPRTIWDGEE----TSYCFKEKSRGVLREWYAHNPYPSPREKRELAEATGLTTTQ 537
Query: 371 VRVWFCNQRQKQK 383
V WF N+RQ+ +
Sbjct: 538 VSNWFKNRRQRDR 550
>pdb|3LVJ|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVJ|B Chain B, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 1)
pdb|3LVK|A Chain A, Crystal Structure Of E.Coli Iscs-Tusa Complex (Form 2)
pdb|3LVL|B Chain B, Crystal Structure Of E.Coli Iscs-Iscu Complex
pdb|3LVM|A Chain A, Crystal Structure Of E.Coli Iscs
pdb|3LVM|B Chain B, Crystal Structure Of E.Coli Iscs
Length = 423
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 34 ASSTPTLPTLKHDMMYHHGMNGTHGGPNGRPHQMSHHGMDGLEM 77
+++TP P + MM M+GT G P R H+ + +++
Sbjct: 29 SATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDI 72
>pdb|3A01|A Chain A, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
pdb|3A01|E Chain E, Crystal Structure Of Aristaless And Clawless Homeodomains
Bo
Length = 93
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
++K+ RTS + LE F Q + + AA+A L + V+ WF N+R K +R
Sbjct: 16 KRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRR 74
>pdb|2HDD|A Chain A, Engrailed Homeodomain Q50k Variant Dna Complex
pdb|2HDD|B Chain B, Engrailed Homeodomain Q50k Variant Dna Complex
Length = 61
Score = 28.5 bits (62), Expect = 6.4, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+KR RT+ ++ + L+ F + + ++ +L L + +++WF N+R K K+
Sbjct: 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
>pdb|1P7I|A Chain A, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|B Chain B, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|C Chain C, Crystal Structure Of Engrailed Homeodomain Mutant K52a
pdb|1P7I|D Chain D, Crystal Structure Of Engrailed Homeodomain Mutant K52a
Length = 59
Score = 28.1 bits (61), Expect = 9.3, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 30/58 (51%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+KR RT+ ++ + L+ F + + ++ +L L + +++WF N R K K+
Sbjct: 1 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAKIKK 58
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.128 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,445,554
Number of Sequences: 62578
Number of extensions: 357769
Number of successful extensions: 969
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 857
Number of HSP's gapped (non-prelim): 95
length of query: 391
length of database: 14,973,337
effective HSP length: 101
effective length of query: 290
effective length of database: 8,652,959
effective search space: 2509358110
effective search space used: 2509358110
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)