Query psy17897
Match_columns 391
No_of_seqs 294 out of 1483
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 16:55:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1p_A POU domain, class 5, tr 100.0 6.9E-43 2.3E-47 312.0 6.9 151 229-385 4-154 (155)
2 2xsd_C POU domain, class 3, tr 100.0 1.5E-42 5E-47 312.9 7.9 156 228-389 6-161 (164)
3 1au7_A Protein PIT-1, GHF-1; c 100.0 7.4E-42 2.5E-46 302.8 7.5 146 233-386 1-146 (146)
4 3d1n_I POU domain, class 6, tr 100.0 4.5E-41 1.6E-45 298.6 9.8 150 232-384 1-150 (151)
5 1e3o_C Octamer-binding transcr 100.0 1.9E-39 6.6E-44 291.0 8.7 153 230-385 2-159 (160)
6 1ic8_A Hepatocyte nuclear fact 99.8 1.1E-21 3.8E-26 181.4 3.1 136 238-384 29-193 (194)
7 2h8r_A Hepatocyte nuclear fact 99.8 7.7E-19 2.6E-23 164.9 8.3 134 238-382 30-218 (221)
8 2d5v_A Hepatocyte nuclear fact 99.7 1.7E-18 5.9E-23 154.9 6.6 142 238-387 7-157 (164)
9 2dmt_A Homeobox protein BARH-l 99.7 3.1E-18 1.1E-22 136.4 4.8 66 323-388 13-78 (80)
10 2da3_A Alpha-fetoprotein enhan 99.7 3.1E-18 1.1E-22 135.7 4.5 65 323-387 13-77 (80)
11 2dmu_A Homeobox protein goosec 99.7 3.9E-18 1.3E-22 132.3 4.7 64 325-388 5-68 (70)
12 2cra_A Homeobox protein HOX-B1 99.7 2.9E-18 9.7E-23 133.2 3.8 64 325-388 5-68 (70)
13 2cue_A Paired box protein PAX6 99.7 6.2E-18 2.1E-22 134.7 5.8 65 325-389 5-69 (80)
14 2dmq_A LIM/homeobox protein LH 99.7 6.6E-18 2.3E-22 134.1 5.6 65 325-389 5-69 (80)
15 1puf_A HOX-1.7, homeobox prote 99.7 1.1E-17 3.7E-22 132.4 6.7 68 322-389 8-75 (77)
16 2dms_A Homeobox protein OTX2; 99.7 4.8E-18 1.6E-22 135.2 4.6 65 325-389 5-69 (80)
17 1nk2_P Homeobox protein VND; h 99.7 1.4E-17 4.6E-22 131.8 6.5 65 325-389 7-71 (77)
18 2da1_A Alpha-fetoprotein enhan 99.7 3.4E-18 1.2E-22 132.5 2.9 64 325-388 5-68 (70)
19 2da2_A Alpha-fetoprotein enhan 99.7 4.7E-18 1.6E-22 131.7 3.7 64 325-388 5-68 (70)
20 1zq3_P PRD-4, homeotic bicoid 99.7 9.9E-18 3.4E-22 129.6 5.4 64 327-390 2-65 (68)
21 1yz8_P Pituitary homeobox 2; D 99.7 2.9E-18 9.9E-23 132.5 2.3 65 326-390 2-66 (68)
22 2h1k_A IPF-1, pancreatic and d 99.7 5.9E-18 2E-22 128.9 4.0 61 326-386 2-62 (63)
23 2l7z_A Homeobox protein HOX-A1 99.7 8.2E-18 2.8E-22 131.9 4.8 65 325-389 5-69 (73)
24 2vi6_A Homeobox protein nanog; 99.7 4.7E-18 1.6E-22 128.9 3.3 60 326-385 2-61 (62)
25 2kt0_A Nanog, homeobox protein 99.7 7.7E-18 2.6E-22 134.9 4.5 64 324-387 19-82 (84)
26 2hdd_A Protein (engrailed home 99.7 6.7E-18 2.3E-22 127.7 3.8 59 326-384 2-60 (61)
27 2djn_A Homeobox protein DLX-5; 99.7 5.5E-18 1.9E-22 131.6 3.5 64 325-388 5-68 (70)
28 2e1o_A Homeobox protein PRH; D 99.7 9.5E-18 3.2E-22 130.3 4.8 64 325-388 5-68 (70)
29 1fjl_A Paired protein; DNA-bin 99.7 1.1E-17 3.7E-22 133.5 5.2 65 324-388 15-79 (81)
30 2m0c_A Homeobox protein arista 99.7 8.4E-18 2.9E-22 131.5 4.2 67 324-390 6-72 (75)
31 1ig7_A Homeotic protein MSX-1; 99.7 1.3E-17 4.4E-22 124.6 4.5 58 328-385 1-58 (58)
32 1ftt_A TTF-1 HD, thyroid trans 99.7 1E-17 3.5E-22 129.5 3.9 63 327-389 2-64 (68)
33 1ahd_P Antennapedia protein mu 99.7 7.3E-18 2.5E-22 130.5 3.0 63 327-389 2-64 (68)
34 1bw5_A ISL-1HD, insulin gene e 99.7 7.7E-18 2.6E-22 129.2 2.8 62 326-387 2-63 (66)
35 3a01_A Homeodomain-containing 99.7 3E-17 1E-21 134.7 6.3 65 324-388 14-78 (93)
36 2k40_A Homeobox expressed in E 99.7 1.5E-17 5E-22 128.0 4.1 64 327-390 1-64 (67)
37 1b8i_A Ultrabithorax, protein 99.7 1.6E-17 5.5E-22 132.8 4.1 63 325-387 18-80 (81)
38 1jgg_A Segmentation protein EV 99.7 1.8E-17 6.2E-22 124.9 4.0 58 328-385 2-59 (60)
39 2da4_A Hypothetical protein DK 99.7 1.4E-17 4.7E-22 132.5 3.3 63 325-387 6-72 (80)
40 2r5y_A Homeotic protein sex co 99.7 1.8E-17 6.3E-22 134.2 3.7 62 325-386 26-87 (88)
41 1wh5_A ZF-HD homeobox family p 99.7 2.6E-17 9E-22 131.8 4.3 61 324-384 14-78 (80)
42 3rkq_A Homeobox protein NKX-2. 99.7 3.1E-17 1.1E-21 121.9 4.4 57 327-383 2-58 (58)
43 1akh_A Protein (mating-type pr 99.7 3.1E-17 1E-21 123.8 3.0 59 325-383 3-61 (61)
44 1b72_A Protein (homeobox prote 99.7 4.9E-17 1.7E-21 134.0 4.5 64 325-388 32-95 (97)
45 3a02_A Homeobox protein arista 99.6 3.9E-17 1.3E-21 123.0 3.3 58 330-387 2-59 (60)
46 2cuf_A FLJ21616 protein; homeo 99.6 7E-17 2.4E-21 132.6 4.7 65 325-389 5-84 (95)
47 1uhs_A HOP, homeodomain only p 99.6 8.3E-17 2.8E-21 125.6 4.8 61 328-388 2-63 (72)
48 1wh7_A ZF-HD homeobox family p 99.6 5E-17 1.7E-21 130.4 3.5 61 323-384 13-78 (80)
49 2hi3_A Homeodomain-only protei 99.6 9.4E-17 3.2E-21 125.7 5.0 61 328-388 3-64 (73)
50 1puf_B PRE-B-cell leukemia tra 99.6 8.6E-17 3E-21 125.7 4.5 63 327-389 1-66 (73)
51 1x2n_A Homeobox protein pknox1 99.6 1.3E-16 4.5E-21 124.6 4.8 64 325-388 5-71 (73)
52 2ly9_A Zinc fingers and homeob 99.6 8.6E-17 2.9E-21 125.9 3.6 63 326-388 5-67 (74)
53 3a03_A T-cell leukemia homeobo 99.6 1.2E-16 4.1E-21 119.1 3.9 54 332-385 2-55 (56)
54 1b72_B Protein (PBX1); homeodo 99.6 1.4E-16 4.7E-21 128.4 4.4 63 327-389 1-66 (87)
55 2da5_A Zinc fingers and homeob 99.6 1.5E-16 5.1E-21 125.4 4.0 60 329-388 9-68 (75)
56 2dn0_A Zinc fingers and homeob 99.6 9.4E-17 3.2E-21 126.6 2.9 64 326-389 7-70 (76)
57 2ecc_A Homeobox and leucine zi 99.6 1.6E-16 5.4E-21 126.6 4.1 59 329-387 5-63 (76)
58 1du6_A PBX1, homeobox protein 99.6 1.2E-16 4.2E-21 121.7 3.3 59 326-384 2-63 (64)
59 3nar_A ZHX1, zinc fingers and 99.6 1.5E-16 5.2E-21 130.9 3.5 64 324-387 22-85 (96)
60 2da6_A Hepatocyte nuclear fact 99.6 3.9E-16 1.3E-20 130.7 5.8 65 325-389 4-89 (102)
61 2dmn_A Homeobox protein TGIF2L 99.6 5.3E-16 1.8E-20 124.7 5.2 64 325-388 5-71 (83)
62 1k61_A Mating-type protein alp 99.6 4.8E-16 1.6E-20 117.0 3.9 56 330-385 1-59 (60)
63 1mnm_C Protein (MAT alpha-2 tr 99.6 6E-16 2.1E-20 125.0 4.3 60 325-384 25-87 (87)
64 2ecb_A Zinc fingers and homeob 99.6 7.7E-16 2.6E-20 126.0 3.2 57 333-389 17-73 (89)
65 1le8_B Mating-type protein alp 99.6 1.1E-15 3.9E-20 122.6 3.9 60 328-387 3-65 (83)
66 1lfb_A Liver transcription fac 99.6 5.9E-16 2E-20 128.9 2.3 66 324-389 6-92 (99)
67 2cqx_A LAG1 longevity assuranc 99.6 8.9E-16 3E-20 120.6 2.8 60 328-387 9-69 (72)
68 2dmp_A Zinc fingers and homeob 99.5 1.4E-15 4.7E-20 123.9 3.3 57 333-389 19-75 (89)
69 1wi3_A DNA-binding protein SAT 99.5 2.4E-15 8.3E-20 117.3 4.4 59 325-383 5-64 (71)
70 2l9r_A Homeobox protein NKX-3. 99.5 1.2E-15 3.9E-20 119.3 2.2 58 333-390 10-67 (69)
71 3nau_A Zinc fingers and homeob 99.5 2.4E-15 8.1E-20 116.7 3.6 52 335-386 12-63 (66)
72 2e19_A Transcription factor 8; 99.5 5.2E-15 1.8E-19 113.7 3.8 55 331-385 7-61 (64)
73 1x2m_A LAG1 longevity assuranc 99.5 4.8E-15 1.6E-19 114.4 2.2 51 336-386 9-60 (64)
74 3k2a_A Homeobox protein MEIS2; 99.4 4.7E-14 1.6E-18 109.1 3.0 57 332-388 3-62 (67)
75 2da7_A Zinc finger homeobox pr 99.4 1.7E-13 5.8E-18 107.3 3.3 47 336-382 14-60 (71)
76 2lk2_A Homeobox protein TGIF1; 99.2 2.8E-12 9.7E-17 104.9 3.5 57 332-388 10-69 (89)
77 1mh3_A Maltose binding-A1 home 99.1 6E-12 2.1E-16 123.7 0.0 56 328-383 366-421 (421)
78 2nzz_A Penetratin conjugated G 98.3 1.1E-07 3.8E-12 65.7 0.8 21 369-389 1-21 (37)
79 4ich_A Transcriptional regulat 96.7 0.00016 5.6E-09 68.3 -1.3 133 237-380 28-166 (311)
80 4ghj_A Probable transcriptiona 95.3 0.013 4.4E-07 48.1 3.9 46 235-289 32-77 (101)
81 2ef8_A C.ECOT38IS, putative tr 94.6 0.084 2.9E-06 39.8 6.5 45 235-288 6-50 (84)
82 3eus_A DNA-binding protein; st 94.6 0.022 7.7E-07 44.3 3.3 45 235-288 10-54 (86)
83 1y7y_A C.AHDI; helix-turn-heli 94.1 0.032 1.1E-06 41.0 3.2 43 234-285 8-50 (74)
84 3f6w_A XRE-family like protein 94.0 0.034 1.1E-06 42.2 3.2 43 235-286 10-52 (83)
85 3kz3_A Repressor protein CI; f 93.9 0.038 1.3E-06 42.0 3.3 45 234-287 7-51 (80)
86 3s8q_A R-M controller protein; 93.5 0.05 1.7E-06 41.3 3.3 43 235-286 7-49 (82)
87 1zug_A Phage 434 CRO protein; 93.1 0.022 7.5E-07 41.6 0.7 40 239-287 3-42 (71)
88 3qq6_A HTH-type transcriptiona 92.9 0.089 3E-06 40.1 3.9 36 240-284 11-46 (78)
89 2b5a_A C.BCLI; helix-turn-heli 92.9 0.073 2.5E-06 39.5 3.3 42 236-286 7-48 (77)
90 2wus_R RODZ, putative uncharac 92.9 0.054 1.9E-06 45.0 2.8 44 235-287 3-46 (112)
91 3vk0_A NHTF, transcriptional r 92.8 0.13 4.4E-06 41.9 5.0 44 235-287 17-60 (114)
92 3g5g_A Regulatory protein; tra 92.7 0.074 2.5E-06 42.8 3.3 43 235-286 24-66 (99)
93 3mlf_A Transcriptional regulat 92.7 0.01 3.5E-07 48.9 -1.9 40 238-286 22-61 (111)
94 2kpj_A SOS-response transcript 92.7 0.12 4.1E-06 40.5 4.4 44 235-287 5-48 (94)
95 2wiu_B HTH-type transcriptiona 92.4 0.073 2.5E-06 40.6 2.8 40 236-284 9-48 (88)
96 2a6c_A Helix-turn-helix motif; 92.4 0.18 6.1E-06 38.7 5.0 44 234-286 13-56 (83)
97 3b7h_A Prophage LP1 protein 11 92.3 0.14 4.9E-06 37.9 4.3 40 238-286 6-45 (78)
98 1r69_A Repressor protein CI; g 91.7 0.088 3E-06 38.0 2.4 40 240-288 2-41 (69)
99 3t76_A VANU, transcriptional r 91.5 0.02 6.8E-07 45.7 -1.4 35 242-285 27-61 (88)
100 2k9q_A Uncharacterized protein 91.5 0.09 3.1E-06 39.5 2.3 39 240-287 3-41 (77)
101 3fmy_A HTH-type transcriptiona 91.4 0.097 3.3E-06 39.4 2.4 37 243-288 15-51 (73)
102 2ys9_A Homeobox and leucine zi 91.1 0.067 2.3E-06 41.7 1.3 42 336-377 15-56 (70)
103 1adr_A P22 C2 repressor; trans 91.1 0.1 3.6E-06 38.4 2.3 41 238-287 4-44 (76)
104 2r1j_L Repressor protein C2; p 91.1 0.2 6.8E-06 35.9 3.8 41 238-287 4-44 (68)
105 1x57_A Endothelial differentia 91.1 0.19 6.5E-06 38.9 3.9 39 239-286 13-51 (91)
106 1lmb_3 Protein (lambda repress 91.0 0.16 5.3E-06 39.2 3.3 42 236-286 14-55 (92)
107 2ewt_A BLDD, putative DNA-bind 90.7 0.2 6.7E-06 36.5 3.4 45 235-286 4-48 (71)
108 3f52_A CLP gene regulator (CLG 90.6 0.13 4.5E-06 41.7 2.6 42 236-286 25-66 (117)
109 3ivp_A Putative transposon-rel 90.5 0.091 3.1E-06 43.3 1.7 43 236-287 9-51 (126)
110 2ppx_A AGR_C_3184P, uncharacte 90.2 0.12 4.3E-06 40.9 2.2 41 239-288 30-70 (99)
111 2o38_A Hypothetical protein; a 90.0 0.28 9.7E-06 41.0 4.3 41 237-286 38-78 (120)
112 2l1p_A DNA-binding protein SAT 89.8 0.85 2.9E-05 36.6 6.6 50 248-306 28-77 (83)
113 3op9_A PLI0006 protein; struct 89.5 0.28 9.4E-06 39.6 3.7 40 239-287 9-48 (114)
114 3fym_A Putative uncharacterize 89.0 0.11 3.9E-06 43.8 1.1 42 238-288 2-43 (130)
115 2l49_A C protein; P2 bacteriop 88.4 0.23 7.8E-06 38.8 2.4 39 240-287 5-43 (99)
116 1jhg_A Trp operon repressor; c 88.3 0.43 1.5E-05 39.5 4.1 57 234-305 38-96 (101)
117 3o9x_A Uncharacterized HTH-typ 88.1 0.47 1.6E-05 39.4 4.3 37 243-288 75-111 (133)
118 2jvl_A TRMBF1; coactivator, he 87.3 0.28 9.7E-06 39.7 2.4 41 238-287 33-75 (107)
119 1y9q_A Transcriptional regulat 87.0 0.57 1.9E-05 41.0 4.4 44 235-287 7-50 (192)
120 1b0n_A Protein (SINR protein); 86.4 0.46 1.6E-05 37.6 3.2 36 240-284 2-37 (111)
121 2bnm_A Epoxidase; oxidoreducta 85.6 0.86 2.9E-05 39.9 4.8 43 235-286 6-48 (198)
122 3kxa_A NGO0477 protein, putati 85.3 0.26 9E-06 42.2 1.3 38 241-287 70-107 (141)
123 3lfp_A CSP231I C protein; tran 85.3 0.28 9.6E-06 38.6 1.4 40 240-288 2-45 (98)
124 2xi8_A Putative transcription 85.1 0.11 3.7E-06 37.1 -1.1 36 243-287 5-40 (66)
125 3cec_A Putative antidote prote 84.8 0.8 2.7E-05 36.2 3.9 37 240-285 19-55 (104)
126 2eby_A Putative HTH-type trans 82.7 0.93 3.2E-05 36.3 3.5 38 240-286 11-49 (113)
127 3bs3_A Putative DNA-binding pr 82.6 0.19 6.5E-06 37.0 -0.7 38 240-286 11-48 (76)
128 3omt_A Uncharacterized protein 82.0 0.98 3.4E-05 33.2 3.1 36 242-286 11-46 (73)
129 2k27_A Paired box protein PAX- 80.6 4.3 0.00015 34.4 7.2 49 331-379 81-136 (159)
130 1pdn_C Protein (PRD paired); p 80.4 7.4 0.00025 30.7 8.1 46 332-377 74-126 (128)
131 2ict_A Antitoxin HIGA; helix-t 80.3 0.8 2.7E-05 35.5 2.2 37 240-285 9-45 (94)
132 1hlv_A CENP-B, major centromer 79.8 1.3 4.3E-05 36.4 3.3 49 330-381 4-52 (131)
133 2ofy_A Putative XRE-family tra 78.5 1.3 4.6E-05 33.4 2.9 42 234-286 11-52 (86)
134 1k78_A Paired box protein PAX5 77.7 9.6 0.00033 31.7 8.3 48 331-378 88-142 (149)
135 3bdn_A Lambda repressor; repre 77.4 1.3 4.5E-05 39.8 3.0 42 237-287 15-56 (236)
136 3bd1_A CRO protein; transcript 76.9 0.95 3.2E-05 34.0 1.6 34 243-286 3-36 (79)
137 3trb_A Virulence-associated pr 76.6 2.2 7.7E-05 34.5 3.9 43 243-294 17-62 (104)
138 3hug_A RNA polymerase sigma fa 76.2 1.7 5.9E-05 33.8 3.0 50 334-388 38-87 (92)
139 2glo_A Brinker CG9653-PA; prot 76.0 1 3.6E-05 32.4 1.6 46 331-377 3-48 (59)
140 2auw_A Hypothetical protein NE 75.8 2 6.8E-05 38.6 3.6 46 232-286 74-128 (170)
141 3pxp_A Helix-turn-helix domain 75.5 1.3 4.4E-05 42.8 2.5 40 238-286 5-50 (292)
142 2p5t_A Putative transcriptiona 74.8 0.61 2.1E-05 40.1 0.0 37 240-285 2-38 (158)
143 2elh_A CG11849-PA, LD40883P; s 74.2 1.8 6.3E-05 33.6 2.7 46 327-377 16-61 (87)
144 3u3w_A Transcriptional activat 73.8 1.7 6E-05 39.4 2.8 41 238-288 4-44 (293)
145 1jko_C HIN recombinase, DNA-in 72.9 1.1 3.7E-05 30.2 0.9 42 334-380 6-47 (52)
146 2qfc_A PLCR protein; TPR, HTH, 72.6 1.5 5E-05 39.9 2.0 40 238-287 4-43 (293)
147 1u78_A TC3 transposase, transp 72.4 5.5 0.00019 32.3 5.3 44 333-380 60-105 (141)
148 2csf_A DNA-binding protein SAT 71.3 1.2 4.2E-05 36.7 1.0 61 238-307 20-85 (101)
149 1iuf_A Centromere ABP1 protein 69.7 6.7 0.00023 33.3 5.4 52 328-379 6-61 (144)
150 2o8x_A Probable RNA polymerase 68.6 2.6 8.8E-05 30.4 2.2 50 333-387 15-64 (70)
151 1x2l_A CUT-like 2, homeobox pr 68.2 3.7 0.00013 33.9 3.3 62 236-308 18-86 (101)
152 1tc3_C Protein (TC3 transposas 67.0 2.5 8.7E-05 27.7 1.8 40 333-377 5-44 (51)
153 1je8_A Nitrate/nitrite respons 66.8 2.6 8.9E-05 32.4 2.0 49 331-385 19-67 (82)
154 2awi_A PRGX; repressor, pherom 65.1 4.4 0.00015 38.7 3.7 39 240-288 4-42 (317)
155 1x3u_A Transcriptional regulat 62.2 3.1 0.00011 30.8 1.6 47 333-385 16-62 (79)
156 1p4w_A RCSB; solution structur 61.3 5.2 0.00018 32.2 2.9 47 331-383 32-78 (99)
157 1fse_A GERE; helix-turn-helix 60.5 5.1 0.00017 29.1 2.5 48 331-384 9-56 (74)
158 3c57_A Two component transcrip 59.8 5.7 0.00019 31.2 2.9 47 333-385 27-73 (95)
159 3mzy_A RNA polymerase sigma-H 59.2 6.9 0.00024 32.0 3.4 49 333-387 109-157 (164)
160 2p7v_B Sigma-70, RNA polymeras 59.0 5.6 0.00019 29.0 2.5 52 333-385 5-56 (68)
161 1s7o_A Hypothetical UPF0122 pr 58.0 6.6 0.00023 32.3 3.1 49 333-386 22-70 (113)
162 1rzs_A Antirepressor, regulato 57.7 4.5 0.00015 29.4 1.8 26 248-282 6-31 (61)
163 2rnj_A Response regulator prot 57.1 3 0.0001 32.4 0.7 48 332-385 28-75 (91)
164 1ku3_A Sigma factor SIGA; heli 56.1 6.3 0.00022 29.1 2.4 50 333-383 10-59 (73)
165 1xsv_A Hypothetical UPF0122 pr 54.3 8.5 0.00029 31.5 3.1 48 334-386 26-73 (113)
166 1tty_A Sigma-A, RNA polymerase 53.4 6.4 0.00022 30.3 2.1 50 333-385 18-69 (87)
167 2fjr_A Repressor protein CI; g 52.3 12 0.00039 32.3 3.8 40 238-288 8-47 (189)
168 2jn6_A Protein CGL2762, transp 49.3 8 0.00027 30.0 2.1 43 331-377 3-46 (97)
169 1neq_A DNA-binding protein NER 48.8 8.3 0.00028 29.3 2.0 31 245-284 15-45 (74)
170 1jhf_A LEXA repressor; LEXA SO 48.3 11 0.00037 33.2 3.0 39 235-282 6-47 (202)
171 1rp3_A RNA polymerase sigma fa 47.0 11 0.00037 33.0 2.8 49 333-386 187-235 (239)
172 1or7_A Sigma-24, RNA polymeras 46.0 11 0.00037 32.0 2.6 48 334-386 141-188 (194)
173 2rgt_A Fusion of LIM/homeobox 45.6 0.89 3.1E-05 39.6 -4.5 30 325-354 134-163 (169)
174 1wh6_A CUT-like 2, homeobox pr 43.3 8.1 0.00028 31.8 1.3 62 236-308 18-86 (101)
175 3frw_A Putative Trp repressor 41.8 18 0.00062 30.1 3.2 40 234-282 39-79 (107)
176 3ulq_B Transcriptional regulat 41.2 16 0.00056 28.5 2.8 49 329-383 25-73 (90)
177 2pij_A Prophage PFL 6 CRO; tra 40.8 11 0.00039 26.8 1.6 30 244-283 6-35 (67)
178 1nr3_A MTH0916, DNA-binding pr 38.1 6.4 0.00022 32.4 -0.2 25 251-284 4-28 (122)
179 2q24_A Putative TETR family tr 37.3 6.8 0.00023 32.9 -0.1 40 339-380 21-60 (194)
180 3clo_A Transcriptional regulat 37.3 15 0.0005 33.7 2.2 49 332-386 196-244 (258)
181 2q0o_A Probable transcriptiona 36.4 19 0.00065 32.3 2.8 48 331-384 173-220 (236)
182 2jpc_A SSRB; DNA binding prote 36.1 7.2 0.00025 27.4 -0.1 42 338-385 3-44 (61)
183 3r1f_A ESX-1 secretion-associa 35.9 20 0.00069 30.2 2.6 43 240-286 8-56 (135)
184 2rn7_A IS629 ORFA; helix, all 35.6 17 0.00057 28.7 2.0 47 331-377 4-53 (108)
185 1u78_A TC3 transposase, transp 34.5 20 0.00067 28.9 2.3 41 332-377 5-45 (141)
186 2lv7_A Calcium-binding protein 34.2 73 0.0025 24.8 5.6 49 328-376 24-79 (100)
187 2qko_A Possible transcriptiona 33.6 16 0.00055 31.1 1.7 41 339-380 34-74 (215)
188 2x48_A CAG38821; archeal virus 32.8 17 0.00058 25.0 1.4 36 336-376 18-53 (55)
189 3kor_A Possible Trp repressor; 32.0 30 0.001 29.3 3.1 25 249-282 72-96 (119)
190 2q1z_A RPOE, ECF SIGE; ECF sig 32.0 14 0.00047 31.2 1.0 28 358-385 155-182 (184)
191 2k27_A Paired box protein PAX- 31.9 29 0.00099 29.1 3.0 41 332-377 24-64 (159)
192 1l3l_A Transcriptional activat 31.1 28 0.00096 31.2 3.0 47 331-383 171-217 (234)
193 2kvr_A Ubiquitin carboxyl-term 30.6 19 0.00066 30.5 1.6 24 357-380 72-95 (130)
194 2lfw_A PHYR sigma-like domain; 30.6 12 0.0004 31.5 0.3 48 333-385 93-140 (157)
195 2rek_A Putative TETR-family tr 29.3 5.4 0.00019 33.6 -2.1 40 339-380 22-61 (199)
196 3on2_A Probable transcriptiona 29.0 18 0.00063 29.7 1.2 40 340-380 19-58 (199)
197 3uj3_X DNA-invertase; helix-tu 28.7 39 0.0013 29.4 3.4 27 355-381 159-185 (193)
198 1wiz_A DNA-binding protein SAT 28.2 11 0.00038 31.1 -0.3 60 238-307 20-85 (101)
199 3t72_q RNA polymerase sigma fa 28.1 31 0.0011 27.7 2.4 53 334-387 20-72 (99)
200 3ccy_A Putative TETR-family tr 27.4 31 0.001 29.0 2.4 41 339-380 20-60 (203)
201 1zx4_A P1 PARB, plasmid partit 26.5 28 0.00096 31.6 2.1 24 249-281 21-44 (192)
202 3lph_A Protein REV; helix-loop 26.4 36 0.0012 26.4 2.3 36 340-389 19-54 (72)
203 2v57_A TETR family transcripti 26.3 13 0.00046 30.7 -0.1 38 340-380 21-58 (190)
204 1l0o_C Sigma factor; bergerat 26.3 14 0.00048 32.1 0.0 44 334-382 199-242 (243)
205 2hin_A GP39, repressor protein 26.2 15 0.0005 28.1 0.1 24 357-380 13-36 (71)
206 3dcf_A Transcriptional regulat 26.2 16 0.00055 30.7 0.4 41 339-380 37-77 (218)
207 1pdn_C Protein (PRD paired); p 26.2 32 0.0011 26.8 2.2 40 333-377 17-56 (128)
208 3him_A Probable transcriptiona 25.7 27 0.00093 28.9 1.7 41 339-380 22-62 (211)
209 2hxo_A Putative TETR-family tr 25.5 43 0.0015 29.9 3.1 49 331-380 13-62 (237)
210 2iai_A Putative transcriptiona 25.0 33 0.0011 29.7 2.2 41 339-380 36-76 (230)
211 3nxc_A HTH-type protein SLMA; 24.9 17 0.00059 30.4 0.3 37 343-380 35-71 (212)
212 3qwg_A ESX-1 secretion-associa 24.3 39 0.0013 28.0 2.4 31 251-285 23-53 (123)
213 1wh8_A CUT-like 2, homeobox pr 24.2 52 0.0018 27.4 3.1 60 238-308 30-96 (111)
214 2hxi_A Putative transcriptiona 23.6 29 0.00099 31.2 1.6 49 331-380 26-75 (241)
215 3kz9_A SMCR; transcriptional r 23.5 22 0.00077 29.3 0.8 40 340-380 24-63 (206)
216 3qp6_A CVIR transcriptional re 23.4 48 0.0016 30.7 3.1 48 331-384 195-242 (265)
217 3plo_X DNA-invertase; resolvas 23.4 50 0.0017 28.8 3.1 34 353-386 157-190 (193)
218 3fmy_A HTH-type transcriptiona 23.1 65 0.0022 23.4 3.2 41 332-379 9-49 (73)
219 3fiw_A Putative TETR-family tr 22.6 22 0.00076 31.1 0.6 49 331-380 22-71 (211)
220 3rd3_A Probable transcriptiona 22.5 19 0.00066 29.6 0.1 41 339-380 16-56 (197)
221 3bd1_A CRO protein; transcript 22.4 17 0.00058 26.8 -0.2 23 357-379 14-36 (79)
222 3f1b_A TETR-like transcription 22.0 15 0.00051 30.5 -0.6 40 340-380 21-60 (203)
223 1xwr_A Regulatory protein CII; 21.9 24 0.00082 28.7 0.6 37 251-298 22-58 (97)
224 2qwt_A Transcriptional regulat 21.7 25 0.00086 29.6 0.7 39 340-380 20-58 (196)
225 2rae_A Transcriptional regulat 21.3 24 0.00081 29.6 0.5 40 339-379 23-62 (207)
226 2x7l_M HIV REV; nuclear export 21.0 94 0.0032 26.1 4.0 36 340-389 16-51 (115)
227 3ppb_A Putative TETR family tr 20.7 26 0.00088 28.7 0.6 41 339-380 15-55 (195)
228 3gzi_A Transcriptional regulat 20.6 24 0.00082 29.7 0.4 40 340-380 24-63 (218)
229 2oi8_A Putative regulatory pro 20.3 21 0.00072 31.0 -0.0 40 340-380 23-62 (216)
230 2hku_A A putative transcriptio 20.1 16 0.00053 31.2 -0.9 39 340-380 27-65 (215)
No 1
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=100.00 E-value=6.9e-43 Score=312.05 Aligned_cols=151 Identities=48% Similarity=0.715 Sum_probs=132.6
Q ss_pred CCCCCHHHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhhHHHHHHHHHHHHH
Q psy17897 229 DTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQ 308 (391)
Q Consensus 229 d~~~d~~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLkPlL~kWLeeaE~~ 308 (391)
|++++.+|||+||+.||+|||+|||||++||.||+.+| | .+|||+||||||++++|++|||||+|+|++||+++|..
T Consensus 4 d~~~~~~~l~~fa~~fk~~ri~lg~tq~~vg~al~~l~--G-~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~ 80 (155)
T 3l1p_A 4 DMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLF--G-KVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNN 80 (155)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--S-CCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHHHhhhheecccHHHHHHHHHhhc--C-cccccccccccccccCChhhHhhcchHHHHHhhhhhcc
Confidence 67788999999999999999999999999999999998 4 57999999999999999999999999999999998843
Q ss_pred hhhcCCCCCCCCCCCCCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 309 AKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
.... ......... .++||+|+.|+..|+..||..|..++||+..++.+||.++||++++|+|||||||+|+||.
T Consensus 81 ~~~~-~~~~~~~~~--~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 81 ENLQ-EISKSETLV--QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp HHHH-HSSCC---C--CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCcc-ccccccccc--cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 2211 111111111 4678899999999999999999999999999999999999999999999999999999985
No 2
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=100.00 E-value=1.5e-42 Score=312.94 Aligned_cols=156 Identities=50% Similarity=0.798 Sum_probs=123.9
Q ss_pred CCCCCCHHHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhhHHHHHHHHHHHH
Q psy17897 228 PDTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEA 307 (391)
Q Consensus 228 pd~~~d~~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLkPlL~kWLeeaE~ 307 (391)
.++.++++|||+||+.||+|||+|||||++||.|++.+|+ ..|||+||||||+++++++|||||+|+|++||+++|.
T Consensus 6 ~~~~~~~~~l~~fa~~fk~~ri~lg~tQ~~vg~alg~l~g---~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~ 82 (164)
T 2xsd_C 6 DEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYG---NVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDS 82 (164)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHS---CCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC
T ss_pred cccccchhHHHHHHHHHHHHHhhcCCcccccccccccccC---CCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhcc
Confidence 3556799999999999999999999999999999999984 5799999999999999999999999999999999885
Q ss_pred HhhhcCCCCCCCCCCCCCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 308 QAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
..... ...+......++||+|++|+..|+..||++|..|+||+..++.+||.+++|++++|+|||||||+|+||.++
T Consensus 83 ~~~~~---~~~~~~~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 83 SSGSP---TNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp --------------------------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred ccCCC---cccccccccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 43211 111223334677889999999999999999999999999999999999999999999999999999999876
Q ss_pred hh
Q psy17897 388 AA 389 (391)
Q Consensus 388 ~a 389 (391)
.+
T Consensus 160 ~~ 161 (164)
T 2xsd_C 160 AA 161 (164)
T ss_dssp --
T ss_pred CC
Confidence 54
No 3
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=100.00 E-value=7.4e-42 Score=302.79 Aligned_cols=146 Identities=50% Similarity=0.798 Sum_probs=124.8
Q ss_pred CHHHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhhHHHHHHHHHHHHHhhhc
Q psy17897 233 DPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNK 312 (391)
Q Consensus 233 d~~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLkPlL~kWLeeaE~~~~~~ 312 (391)
+++|||+||+.||++||+|||||++||.|++.++ | ..|||+||||||+++++++|||||+|+|++|++++|......
T Consensus 1 ~~~~l~~fa~~~k~~ri~lg~tQ~~vg~al~~l~--g-~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~~~ 77 (146)
T 1au7_A 1 GMRALEQFANEFKVRRIKLGYTQTNVGEALAAVH--G-SEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGALY 77 (146)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTT--S-SCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CccHHHHHHHHHHHHHHhccCcHHhhhhhcchhc--c-CCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhcccCcc
Confidence 4789999999999999999999999999999998 4 579999999999999999999999999999999988543211
Q ss_pred CCCCCCCCCCCCCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHH
Q psy17897 313 RRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386 (391)
Q Consensus 313 ~~~~~~~~~~~~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~ 386 (391)
. .......++||+|+.|+..|+..||..|..++||+..++.+||..+||++++|+|||||||+|+||++
T Consensus 78 ----~-~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~k 146 (146)
T 1au7_A 78 ----N-EKVGANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146 (146)
T ss_dssp ----------------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSCC
T ss_pred ----C-cccCCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhccC
Confidence 1 11223356788899999999999999999999999999999999999999999999999999999853
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=100.00 E-value=4.5e-41 Score=298.55 Aligned_cols=150 Identities=37% Similarity=0.635 Sum_probs=131.5
Q ss_pred CCHHHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhhHHHHHHHHHHHHHhhh
Q psy17897 232 TDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKN 311 (391)
Q Consensus 232 ~d~~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLkPlL~kWLeeaE~~~~~ 311 (391)
++++|||+||+.||+|||++||||++||.|++.+++ ..|||+||||||+++++++|||+++|+|++||+++|.....
T Consensus 1 ~~~~~~~~fa~~f~~~ri~lg~tQ~~vg~al~~l~g---~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~ 77 (151)
T 3d1n_I 1 INMEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEG---PAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQE 77 (151)
T ss_dssp -CHHHHHHHHHHHHHHHHTTTCCHHHHHHHHSCSSS---CCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCcccHHHhhccccC---CCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhcccc
Confidence 368999999999999999999999999999999884 57999999999999999999999999999999999976443
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhh
Q psy17897 312 KRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384 (391)
Q Consensus 312 ~~~~~~~~~~~~~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR 384 (391)
+.............++||+|+.|+..|+..||++|..++||+..++.+||.++||++++|+|||||||+|+||
T Consensus 78 ~~~~~~~~~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 78 GQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CSTTHHHHHCSSCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CcccccccCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3221110011223467889999999999999999999999999999999999999999999999999999997
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=100.00 E-value=1.9e-39 Score=290.95 Aligned_cols=153 Identities=46% Similarity=0.739 Sum_probs=125.7
Q ss_pred CCCCHHHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhhHHHHHHHHHHHHHh
Q psy17897 230 TDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQA 309 (391)
Q Consensus 230 ~~~d~~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLkPlL~kWLeeaE~~~ 309 (391)
+.+|++||++||+.||++||++||||.+||.+++.+++ +.|||+||||||.+++|++|||||+|+|++||+++|...
T Consensus 2 ~~~~~~~~~~~~~~~k~~r~~lg~tQ~~vg~~lg~l~g---~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~ 78 (160)
T 1e3o_C 2 EPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYG---NDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANL 78 (160)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHS---CCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC---
T ss_pred CCCcHHHHHHHHHHHHHHHHHcCCCHHHHHHhhccccC---CCcCccccccccccCCChHHHHhcchhHHHHHHhhhccc
Confidence 45789999999999999999999999999999999984 569999999999999999999999999999999998543
Q ss_pred hhcCCCC-----CCCCCCCCCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhh
Q psy17897 310 KNKRRDP-----DAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384 (391)
Q Consensus 310 ~~~~~~~-----~~~~~~~~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR 384 (391)
......+ ..+......++||+|+.|+..|+..||++|..++||+..++.+||.++||++++|+|||||||+|+||
T Consensus 79 ~~~~~~~s~~~~~~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr 158 (160)
T 1e3o_C 79 SSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKR 158 (160)
T ss_dssp -------------------------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTS
T ss_pred ccCCCCCCCCCcCCCCCCCCCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhc
Confidence 2211111 01112223577889999999999999999999999999999999999999999999999999999998
Q ss_pred H
Q psy17897 385 M 385 (391)
Q Consensus 385 ~ 385 (391)
+
T Consensus 159 ~ 159 (160)
T 1e3o_C 159 I 159 (160)
T ss_dssp C
T ss_pred c
Confidence 5
No 6
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.83 E-value=1.1e-21 Score=181.38 Aligned_cols=136 Identities=18% Similarity=0.262 Sum_probs=103.8
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhhHHHHHHHHHHHHHhhhc-CC--
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNK-RR-- 314 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLkPlL~kWLeeaE~~~~~~-~~-- 314 (391)
..|+++++..++..|+||.+|+.++| +||++||+|+.......... +..++.||.......... ..
T Consensus 29 ~~l~~~Ik~~l~~~gitQ~~lA~~~G---------iSqs~ISr~l~~~~~~~~~k--raaly~W~~~~~~~i~~~~~~~~ 97 (194)
T 1ic8_A 29 WRVAKMVKSYLQQHNIPQREVVDTTG---------LNQSHLSQHLNKGTPMKTQK--RAALYTWYVRKQREVAQQFTHAG 97 (194)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHC---------CCHHHHHHHHHSBCCCCHHH--HHHHHHHHHHHTTTTHHHHCCC-
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhC---------CChHHHHHHHhcCccccccc--cccchhhHHHhhhhhhccccCCC
Confidence 44999999999999999999999985 99999999988776665543 467899998764321110 00
Q ss_pred -----CCCCCCCCCCCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------------CCC
Q psy17897 315 -----DPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLD---------------------LKK 368 (391)
Q Consensus 315 -----~~~~~~~~~~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLg---------------------Ls~ 368 (391)
..........+++||.|+.|+..|+..||++|..++||+..+|++||..|+ |++
T Consensus 98 ~~~~~~~~~~~~~~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte 177 (194)
T 1ic8_A 98 QGGLIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTE 177 (194)
T ss_dssp -------------------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCH
T ss_pred CCCCCCCCcccccccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCc
Confidence 000001112356788999999999999999999999999999999999999 999
Q ss_pred CccccccchhhhHHhh
Q psy17897 369 NVVRVWFCNQRQKQKR 384 (391)
Q Consensus 369 ~qVrvWFqNRR~K~KR 384 (391)
.+|+|||||||+|+|.
T Consensus 178 ~~V~~WFqNRR~~~k~ 193 (194)
T 1ic8_A 178 VRVYNWFANRRKEEAF 193 (194)
T ss_dssp HHHHHHHHHHHHHCC-
T ss_pred cccchhchhhhhhhhc
Confidence 9999999999999875
No 7
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.76 E-value=7.7e-19 Score=164.92 Aligned_cols=134 Identities=19% Similarity=0.237 Sum_probs=100.4
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhhHHHHHHHHHHHHHhhhc-----
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNK----- 312 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLkPlL~kWLeeaE~~~~~~----- 312 (391)
.+|++++|..|+..|+||.+|+..+| +||++|+++++.. +.....| +..+..||.....+....
T Consensus 30 ~~~~~~Ik~~r~~~gltQ~evA~~tG---------ISqS~ISq~e~~g-~~~t~~k-~a~~y~Wy~~~~~e~~~~~~~~~ 98 (221)
T 2h8r_A 30 WRAAKMIKGYMQQHNIPQREVVDVTG---------LNQSHLSQHLNKG-TPMKTQK-RAALYTWYVRKQREILRQFNQTV 98 (221)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHT---------CCHHHHHHHHTTC-CCCCHHH-HHHHHHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHhCC-CchhHHH-HHHHHHHHHHHhhhhhhcccccc
Confidence 35899999999999999999999985 9999999999844 3333344 356678997654331100
Q ss_pred -----CC------------------------CCCCCCCCCCCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHH
Q psy17897 313 -----RR------------------------DPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEK 363 (391)
Q Consensus 313 -----~~------------------------~~~~~~~~~~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~q 363 (391)
.. .++.......+++||.|+.|+..|+.+||++|..++||+..+|++||..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~ 178 (221)
T 2h8r_A 99 QSSGNMTDKSSQDQLLFLFPEFSQQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEE 178 (221)
T ss_dssp -------------------------------------------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHH
T ss_pred cccccccccccccchhhhhhhhhccccCCCCCcccccccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 00 0011111223567888999999999999999999999999999999999
Q ss_pred hC---------------------CCCCccccccchhhhHH
Q psy17897 364 LD---------------------LKKNVVRVWFCNQRQKQ 382 (391)
Q Consensus 364 Lg---------------------Ls~~qVrvWFqNRR~K~ 382 (391)
|| |++.+|+|||+|||++.
T Consensus 179 ~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 179 CNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp HHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred HChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 98 88999999999999875
No 8
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.73 E-value=1.7e-18 Score=154.85 Aligned_cols=142 Identities=21% Similarity=0.247 Sum_probs=93.2
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhh---hhHHHHHHHHHHHHHhh-hcC
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIA---LKPILQAWLEEAEAQAK-NKR 313 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~K---LkPlL~kWLeeaE~~~~-~~~ 313 (391)
++.+..++......+++|..++..+- | ++|.+++.+....-...++.. ..-.+..||.+.+.... ..+
T Consensus 7 ~~i~~~i~~~l~~~~i~q~~fa~~il-----g---~sq~~ls~~l~~pkpw~~l~~g~~~y~rm~~WL~~pe~~r~~~l~ 78 (164)
T 2d5v_A 7 KEVAQRITTELKRYSIPQAIFAQRVL-----C---RSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALR 78 (164)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHT-----S---CCHHHHHHHHHSCCCGGGCSTTHHHHHHHHHHHHSCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCchHHHHHHHh-----c---CCchhHHHHcCCCCCHHHHcccchHHHHHHHHHhccchhhhhhhh
Confidence 44555666666777889998877552 2 788888876554333222221 11237789976553311 110
Q ss_pred C-CC----CCCCCCCCCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 314 R-DP----DAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 314 ~-~~----~~~~~~~~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
. .+ .........++||+|+.|+..|+..||+.|..++||+..++.+||.++||++.+|+|||||||+|+|+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 79 LAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp C--------------------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred cccccccccccCCcCCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 0 00 00111223467889999999999999999999999999999999999999999999999999999998654
No 9
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=3.1e-18 Score=136.38 Aligned_cols=66 Identities=29% Similarity=0.333 Sum_probs=61.4
Q ss_pred CCCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 323 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 323 ~~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
...++||.|+.|+..|+..||..|..++||+..++.+||..|+|++.+|+|||||||+|+||..++
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~s 78 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGPS 78 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCSC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccCC
Confidence 345778899999999999999999999999999999999999999999999999999999997653
No 10
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-18 Score=135.66 Aligned_cols=65 Identities=29% Similarity=0.491 Sum_probs=61.0
Q ss_pred CCCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 323 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 323 ~~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
...++||.|+.|+.+|+..||.+|..++||+..++.+||.+|+|++.+|+|||||||+|+||..+
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 13 EPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 34577889999999999999999999999999999999999999999999999999999999764
No 11
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.9e-18 Score=132.32 Aligned_cols=64 Identities=28% Similarity=0.430 Sum_probs=60.6
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
.+.||+|+.|+..|+..||.+|..++||+..++.+||.++||++.+|+|||||||+|+||..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGPS 68 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTSTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCCC
Confidence 4678899999999999999999999999999999999999999999999999999999997654
No 12
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=2.9e-18 Score=133.23 Aligned_cols=64 Identities=23% Similarity=0.374 Sum_probs=60.5
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
.++||+|+.|+..|+..||..|..++||+..++.+||.++||++.+|+|||||||+|+||...+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGPS 68 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCTT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCCC
Confidence 4678899999999999999999999999999999999999999999999999999999997654
No 13
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=6.2e-18 Score=134.66 Aligned_cols=65 Identities=29% Similarity=0.418 Sum_probs=61.4
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
.++||+|+.|+..|+..||.+|..++||+..++.+||..|+|++.+|+|||||||+|+||..+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 46788999999999999999999999999999999999999999999999999999999987654
No 14
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=6.6e-18 Score=134.10 Aligned_cols=65 Identities=34% Similarity=0.596 Sum_probs=61.5
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
.++||+|+.|+..|+..||.+|..++||+..++.+||.+|+|++.+|+|||||||+|+||...+.
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~~ 69 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQ 69 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999987654
No 15
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.71 E-value=1.1e-17 Score=132.39 Aligned_cols=68 Identities=25% Similarity=0.394 Sum_probs=63.0
Q ss_pred CCCCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 322 LPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 322 ~~~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
....+.+|+|+.|+..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+||..+..
T Consensus 8 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~~ 75 (77)
T 1puf_A 8 LHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDR 75 (77)
T ss_dssp CCCCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhhc
Confidence 34457788999999999999999999999999999999999999999999999999999999988754
No 16
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.71 E-value=4.8e-18 Score=135.18 Aligned_cols=65 Identities=29% Similarity=0.415 Sum_probs=61.4
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
.++||+|+.|+..|+..||.+|..++||+..++.+||.+|+|++.+|+|||||||+|+||..+..
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~~ 69 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQQ 69 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHcc
Confidence 46788999999999999999999999999999999999999999999999999999999987654
No 17
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.70 E-value=1.4e-17 Score=131.79 Aligned_cols=65 Identities=26% Similarity=0.401 Sum_probs=60.9
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
.+++|.|+.|+..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+||.....
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 46788899999999999999999999999999999999999999999999999999999877653
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=3.4e-18 Score=132.51 Aligned_cols=64 Identities=33% Similarity=0.539 Sum_probs=60.6
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
.++||+|+.|+..|+..||.+|..++||+..++.+||..+||++.+|+|||||||+|+||..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGPS 68 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhccc
Confidence 4678899999999999999999999999999999999999999999999999999999997653
No 19
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.70 E-value=4.7e-18 Score=131.73 Aligned_cols=64 Identities=25% Similarity=0.486 Sum_probs=60.3
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
.++||+|+.|+..|+..||.+|..++||+..++.+||.++||++.+|+|||||||+|+||..+.
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGPS 68 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhcccc
Confidence 4678899999999999999999999999999999999999999999999999999999987643
No 20
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.70 E-value=9.9e-18 Score=129.60 Aligned_cols=64 Identities=25% Similarity=0.425 Sum_probs=60.9
Q ss_pred CCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhhc
Q psy17897 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAAQ 390 (391)
Q Consensus 327 kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~aq 390 (391)
+||.|+.|+..|+..||..|..++||+..++..||..+||++.+|+|||||||+|+|+..+..+
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~~~ 65 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQHK 65 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcccc
Confidence 5789999999999999999999999999999999999999999999999999999999887654
No 21
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.70 E-value=2.9e-18 Score=132.47 Aligned_cols=65 Identities=29% Similarity=0.393 Sum_probs=61.6
Q ss_pred CCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhhc
Q psy17897 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAAQ 390 (391)
Q Consensus 326 ~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~aq 390 (391)
++||+|+.|+..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+||..+..+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~~~ 66 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEFIV 66 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhccC
Confidence 57889999999999999999999999999999999999999999999999999999999887654
No 22
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.70 E-value=5.9e-18 Score=128.89 Aligned_cols=61 Identities=28% Similarity=0.415 Sum_probs=56.4
Q ss_pred CCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHH
Q psy17897 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386 (391)
Q Consensus 326 ~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~ 386 (391)
++||.|+.|+..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+||..
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4678999999999999999999999999999999999999999999999999999999864
No 23
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.70 E-value=8.2e-18 Score=131.88 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=61.1
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
.+.||+|+.|+..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+||.....
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVINKL 69 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhccc
Confidence 46788999999999999999999999999999999999999999999999999999999976554
No 24
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.70 E-value=4.7e-18 Score=128.91 Aligned_cols=60 Identities=30% Similarity=0.416 Sum_probs=53.1
Q ss_pred CCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 326 ~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
+++|.|+.|+..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+||.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 568899999999999999999999999999999999999999999999999999999985
No 25
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-18 Score=134.87 Aligned_cols=64 Identities=28% Similarity=0.388 Sum_probs=60.5
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 324 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 324 ~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
..++||.|+.|+..|+..||.+|..++||+..++.+||..|||++.+|+|||||||+|+||.++
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 3577889999999999999999999999999999999999999999999999999999999764
No 26
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.69 E-value=6.7e-18 Score=127.69 Aligned_cols=59 Identities=24% Similarity=0.451 Sum_probs=53.4
Q ss_pred CCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhh
Q psy17897 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384 (391)
Q Consensus 326 ~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR 384 (391)
.+||.|+.|+..|+..||..|..|+||+..++.+||..+||++.+|++||||||+|+||
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 36789999999999999999999999999999999999999999999999999999997
No 27
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.5e-18 Score=131.61 Aligned_cols=64 Identities=23% Similarity=0.331 Sum_probs=60.3
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
.++||+|+.|+..|+..||..|..++||+..++.+||.++||++.+|++||||||+|+||...+
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~s 68 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGPS 68 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSSS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCCC
Confidence 4678899999999999999999999999999999999999999999999999999999987643
No 28
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=9.5e-18 Score=130.27 Aligned_cols=64 Identities=25% Similarity=0.324 Sum_probs=60.1
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
.+.+|+|+.|+..|+..||.+|..++||+..++.+||.++||++.+|++||||||+|+|+.+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~~ 68 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGPS 68 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCCC
Confidence 3567889999999999999999999999999999999999999999999999999999997653
No 29
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.69 E-value=1.1e-17 Score=133.46 Aligned_cols=65 Identities=23% Similarity=0.429 Sum_probs=60.5
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 324 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 324 ~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
..++||+|+.|+..|+..||.+|..++||+..++..||.++||++.+|++||||||+|+||..++
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~~ 79 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHTS 79 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhccc
Confidence 35678899999999999999999999999999999999999999999999999999999998764
No 30
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=8.4e-18 Score=131.48 Aligned_cols=67 Identities=30% Similarity=0.434 Sum_probs=62.3
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhhc
Q psy17897 324 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAAQ 390 (391)
Q Consensus 324 ~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~aq 390 (391)
.++++|.|+.|+..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+||..+.++
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~~q 72 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERFGQ 72 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhhhh
Confidence 3567888999999999999999999999999999999999999999999999999999999876554
No 31
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.69 E-value=1.3e-17 Score=124.62 Aligned_cols=58 Identities=29% Similarity=0.472 Sum_probs=55.9
Q ss_pred CCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 328 KRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
||+|+.|+..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+||.
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 58 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhccC
Confidence 5789999999999999999999999999999999999999999999999999999973
No 32
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.68 E-value=1e-17 Score=129.53 Aligned_cols=63 Identities=25% Similarity=0.387 Sum_probs=59.8
Q ss_pred CCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 327 kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
+||.|+.|+..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+||..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 64 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKDK 64 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhHh
Confidence 577899999999999999999999999999999999999999999999999999999987654
No 33
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.68 E-value=7.3e-18 Score=130.49 Aligned_cols=63 Identities=25% Similarity=0.384 Sum_probs=59.7
Q ss_pred CCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 327 kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
+||.|+.|+..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+||..+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 64 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKTK 64 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhcccc
Confidence 578899999999999999999999999999999999999999999999999999999987653
No 34
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.68 E-value=7.7e-18 Score=129.25 Aligned_cols=62 Identities=31% Similarity=0.536 Sum_probs=59.1
Q ss_pred CCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 326 ~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
++||.|+.|+..|+..||..|..++||+..++..||..+||++.+|++||||||+|+|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 46889999999999999999999999999999999999999999999999999999998754
No 35
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.68 E-value=3e-17 Score=134.67 Aligned_cols=65 Identities=29% Similarity=0.404 Sum_probs=61.1
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 324 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 324 ~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
..++||+|+.|+..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+||....
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 34678889999999999999999999999999999999999999999999999999999998764
No 36
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=128.03 Aligned_cols=64 Identities=31% Similarity=0.507 Sum_probs=60.0
Q ss_pred CCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhhc
Q psy17897 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAAQ 390 (391)
Q Consensus 327 kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~aq 390 (391)
.||+|+.|+..|+..||..|..++||+..++..||..+||++.+|++||||||+|+||..+..|
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~~~q 64 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHRESQ 64 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCCTTC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhchhcc
Confidence 3678999999999999999999999999999999999999999999999999999999776544
No 37
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.68 E-value=1.6e-17 Score=132.82 Aligned_cols=63 Identities=24% Similarity=0.385 Sum_probs=54.9
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
+++||+|+.|+..|+..||..|..|+||+..++.+||..+||++.+|+|||||||+|+||..+
T Consensus 18 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 18 GLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp ------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 467889999999999999999999999999999999999999999999999999999998754
No 38
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.67 E-value=1.8e-17 Score=124.89 Aligned_cols=58 Identities=31% Similarity=0.489 Sum_probs=55.6
Q ss_pred CCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 328 KRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
||.|+.|+..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+||.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 39
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-17 Score=132.52 Aligned_cols=63 Identities=27% Similarity=0.454 Sum_probs=59.7
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcC----CCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQ----PRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n----~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
.++||+|+.|+.+|+.+||.+|+.+ +||+..++.+||.++||++.+|+|||||||+|+||...
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 4678899999999999999999999 99999999999999999999999999999999998653
No 40
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.67 E-value=1.8e-17 Score=134.16 Aligned_cols=62 Identities=32% Similarity=0.478 Sum_probs=55.7
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHH
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~ 386 (391)
++.||+|+.|+..|+..||..|..++||+..++.+||..+||++.+|+|||||||+|+||..
T Consensus 26 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 46788999999999999999999999999999999999999999999999999999999865
No 41
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.67 E-value=2.6e-17 Score=131.76 Aligned_cols=61 Identities=25% Similarity=0.430 Sum_probs=58.0
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhc----CCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhh
Q psy17897 324 AGEKKRKRTSIAAPEKRSLEAYFAV----QPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384 (391)
Q Consensus 324 ~~~kKRkRT~ft~~Ql~~LE~~F~~----n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR 384 (391)
..++||+||.|+.+|+..||..|+. ++||+..++.+||..|+|++.+|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3577889999999999999999999 999999999999999999999999999999999886
No 42
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.67 E-value=3.1e-17 Score=121.92 Aligned_cols=57 Identities=28% Similarity=0.431 Sum_probs=54.9
Q ss_pred CCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHh
Q psy17897 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383 (391)
Q Consensus 327 kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~K 383 (391)
+||.|+.|+..|+..||..|..++||+..++.+||.++||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 567899999999999999999999999999999999999999999999999999986
No 43
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.65 E-value=3.1e-17 Score=123.75 Aligned_cols=59 Identities=25% Similarity=0.434 Sum_probs=48.6
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~K 383 (391)
.+++|+|+.|+..|+..||.+|..++||+..++.+||..+||++.+|++||||||+|+|
T Consensus 3 ~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 3 EKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ---------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 36778899999999999999999999999999999999999999999999999999976
No 44
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.65 E-value=4.9e-17 Score=134.01 Aligned_cols=64 Identities=30% Similarity=0.438 Sum_probs=57.2
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
.+++|+|+.|+..|+..||..|..++||+..++.+||..|||++.+|+|||||||+|+||..+.
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 95 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRERE 95 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhcc
Confidence 4678899999999999999999999999999999999999999999999999999999998764
No 45
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.65 E-value=3.9e-17 Score=123.04 Aligned_cols=58 Identities=22% Similarity=0.342 Sum_probs=50.7
Q ss_pred CCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 330 KRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 330 kRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
.|+.|+..|+..||..|..++||+..++.+||.++||++.+|++||||||+|+||.++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 5899999999999999999999999999999999999999999999999999999764
No 46
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=7e-17 Score=132.59 Aligned_cols=65 Identities=25% Similarity=0.326 Sum_probs=61.6
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhC---------------CCCCccccccchhhhHHhhHHhhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLD---------------LKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLg---------------Ls~~qVrvWFqNRR~K~KR~~k~a 389 (391)
.++||.|+.|+..|+.+||.+|+.++||+..++++||..|+ |++.+|++||||||+|+||+.+.+
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~~ 84 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIA 84 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhcc
Confidence 46788999999999999999999999999999999999999 999999999999999999988754
No 47
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=8.3e-17 Score=125.59 Aligned_cols=61 Identities=16% Similarity=0.268 Sum_probs=57.5
Q ss_pred CCCCcccChHHHHHHHHHhhc-CCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 328 KRKRTSIAAPEKRSLEAYFAV-QPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 328 KRkRT~ft~~Ql~~LE~~F~~-n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
.++|+.|+..|+..||..|.. ++||+..++.+||.++||++.+|++||||||+|+||..+.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccC
Confidence 467899999999999999996 9999999999999999999999999999999999998754
No 48
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.64 E-value=5e-17 Score=130.37 Aligned_cols=61 Identities=20% Similarity=0.413 Sum_probs=57.2
Q ss_pred CCCCCCCCCcccChHHHHHHHHHhhc-----CCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhh
Q psy17897 323 PAGEKKRKRTSIAAPEKRSLEAYFAV-----QPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384 (391)
Q Consensus 323 ~~~~kKRkRT~ft~~Ql~~LE~~F~~-----n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR 384 (391)
...++||+||.|+.+|+..|| .|.. ++||+..++.+||.+|+|++.+|+|||||||+|+|+
T Consensus 13 ~~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 13 SGGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 345778899999999999999 7999 999999999999999999999999999999999886
No 49
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.64 E-value=9.4e-17 Score=125.72 Aligned_cols=61 Identities=18% Similarity=0.269 Sum_probs=57.6
Q ss_pred CCCCcccChHHHHHHHHHhh-cCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 328 KRKRTSIAAPEKRSLEAYFA-VQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 328 KRkRT~ft~~Ql~~LE~~F~-~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
+++|+.|+..|+..||..|. .++||+..++.+||.++||++.+|++||||||+|+||..+.
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccC
Confidence 56899999999999999999 59999999999999999999999999999999999998753
No 50
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.64 E-value=8.6e-17 Score=125.67 Aligned_cols=63 Identities=29% Similarity=0.426 Sum_probs=59.3
Q ss_pred CCCCCcccChHHHHHHHHHh---hcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 327 KKRKRTSIAAPEKRSLEAYF---AVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 327 kKRkRT~ft~~Ql~~LE~~F---~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
+||+|+.|+..|+..||.+| ..++||+..++..||..+||++.+|+|||||||+|+|+.....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 36789999999999999999 9999999999999999999999999999999999999877654
No 51
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=1.3e-16 Score=124.62 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=59.4
Q ss_pred CCCCCCCcccChHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAV---QPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~---n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
.++||+|+.|+..|+..||.+|.. ++||+..++.+||.++||++.+|+|||||||+|+|+....
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 467888999999999999999976 9999999999999999999999999999999999987543
No 52
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.63 E-value=8.6e-17 Score=125.86 Aligned_cols=63 Identities=17% Similarity=0.290 Sum_probs=59.3
Q ss_pred CCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 326 ~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
..++.|+.|+..|+..||..|..++||+..++.+||.++||++.+|++||||||+|+||.+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 457789999999999999999999999999999999999999999999999999999997654
No 53
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.63 E-value=1.2e-16 Score=119.07 Aligned_cols=54 Identities=31% Similarity=0.432 Sum_probs=51.1
Q ss_pred cccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 332 TSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 332 T~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
|.|+..|+..||..|..++||+..++.+||..+||++.+|++||||||+|+||.
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 679999999999999999999999999999999999999999999999999985
No 54
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.63 E-value=1.4e-16 Score=128.37 Aligned_cols=63 Identities=29% Similarity=0.426 Sum_probs=57.9
Q ss_pred CCCCCcccChHHHHHHHHHh---hcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 327 KKRKRTSIAAPEKRSLEAYF---AVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 327 kKRkRT~ft~~Ql~~LE~~F---~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
+||+|+.|+..|+.+||.+| ..++||+..++.+||.++||++.+|++||||||+|+|+.....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 36789999999999999999 8999999999999999999999999999999999999876543
No 55
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.5e-16 Score=125.44 Aligned_cols=60 Identities=23% Similarity=0.428 Sum_probs=56.4
Q ss_pred CCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 329 RKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 329 RkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
++|+.||..|+..||..|..|+||+..++.+||..+||++.+|+|||||||+|+||..+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 456779999999999999999999999999999999999999999999999999997754
No 56
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9.4e-17 Score=126.64 Aligned_cols=64 Identities=16% Similarity=0.285 Sum_probs=59.0
Q ss_pred CCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 326 ~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
..++.|+.|+..|+..||..|..++||+..++.+||.++||++.+|++||||||+|+||..+..
T Consensus 7 ~~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~~ 70 (76)
T 2dn0_A 7 GASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGSR 70 (76)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSSS
T ss_pred CCCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhcccC
Confidence 3455689999999999999999999999999999999999999999999999999999976543
No 57
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=1.6e-16 Score=126.61 Aligned_cols=59 Identities=14% Similarity=0.210 Sum_probs=55.1
Q ss_pred CCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 329 RKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 329 RkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
++|+.||.+|+.+||+.|..|+||+..++++||..+||++.+|+|||||||+|+|+.+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~l 63 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQL 63 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHHH
Confidence 35667999999999999999999999999999999999999999999999999998643
No 58
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.62 E-value=1.2e-16 Score=121.68 Aligned_cols=59 Identities=25% Similarity=0.428 Sum_probs=56.4
Q ss_pred CCCCCCcccChHHHHHHHHHh---hcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhh
Q psy17897 326 EKKRKRTSIAAPEKRSLEAYF---AVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384 (391)
Q Consensus 326 ~kKRkRT~ft~~Ql~~LE~~F---~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR 384 (391)
..+|+|+.|+..|+..||.+| ..++||+..++.+||.++||++.+|++||+|||+|+||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 457889999999999999999 99999999999999999999999999999999999987
No 59
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.61 E-value=1.5e-16 Score=130.95 Aligned_cols=64 Identities=19% Similarity=0.255 Sum_probs=56.8
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 324 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 324 ~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
....+|+|+.|+..|+..||..|..++||+..++.+||.++||++.+|++||||||+|+||.+.
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~l 85 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNL 85 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhcc
Confidence 3456788999999999999999999999999999999999999999999999999999998653
No 60
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=3.9e-16 Score=130.74 Aligned_cols=65 Identities=25% Similarity=0.324 Sum_probs=60.9
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHh---------------------CCCCCccccccchhhhHHh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL---------------------DLKKNVVRVWFCNQRQKQK 383 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qL---------------------gLs~~qVrvWFqNRR~K~K 383 (391)
.++||.|+.|+..|+.+||+.|+.++||+..+|++||..| .+++.+|+|||||||+|+|
T Consensus 4 ~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~k 83 (102)
T 2da6_A 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEA 83 (102)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHHH
Confidence 4678899999999999999999999999999999999999 7999999999999999999
Q ss_pred hHHhhh
Q psy17897 384 RMKFAA 389 (391)
Q Consensus 384 R~~k~a 389 (391)
++.+.+
T Consensus 84 r~~~~~ 89 (102)
T 2da6_A 84 FRQKLA 89 (102)
T ss_dssp HHHHHH
T ss_pred HhhHhh
Confidence 987654
No 61
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.60 E-value=5.3e-16 Score=124.71 Aligned_cols=64 Identities=20% Similarity=0.348 Sum_probs=59.1
Q ss_pred CCCCCCCcccChHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAV---QPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~---n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
.++||+|+.|+..|+..|+.+|.. ++||+..++.+||.++||++.||+|||||||+|+|+....
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~ 71 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQ 71 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHH
Confidence 467888999999999999999987 6999999999999999999999999999999999987543
No 62
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.59 E-value=4.8e-16 Score=116.95 Aligned_cols=56 Identities=21% Similarity=0.456 Sum_probs=53.8
Q ss_pred CCcccChHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 330 KRTSIAAPEKRSLEAYFAV---QPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 330 kRT~ft~~Ql~~LE~~F~~---n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
+|+.|+..|+..||.+|.. ++||+..++.+||.++||++.+|++||+|||+|+||.
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 4789999999999999999 9999999999999999999999999999999999974
No 63
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.58 E-value=6e-16 Score=124.99 Aligned_cols=60 Identities=22% Similarity=0.418 Sum_probs=56.7
Q ss_pred CCCCCCCcccChHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAV---QPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~---n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR 384 (391)
.+++|+|+.|+..|+..||.+|.. ++||+..++.+||.++||++.+|++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 456777999999999999999999 999999999999999999999999999999999984
No 64
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.56 E-value=7.7e-16 Score=126.02 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=53.9
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
.||.+|+.+||+.|..|+||+..++.+||..|||++++|+|||||||+|+|++++..
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~~~ 73 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEEKM 73 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHHHh
Confidence 789999999999999999999999999999999999999999999999999876543
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.56 E-value=1.1e-15 Score=122.57 Aligned_cols=60 Identities=18% Similarity=0.388 Sum_probs=54.8
Q ss_pred CCCCcccChHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 328 KRKRTSIAAPEKRSLEAYFAV---QPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 328 KRkRT~ft~~Ql~~LE~~F~~---n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
+++|++|+..|+..||.+|.. ++||+..++.+||..+||++.+|+|||||||+|+|+...
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~~ 65 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITI 65 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccccc
Confidence 455677999999999999999 999999999999999999999999999999999998653
No 66
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.56 E-value=5.9e-16 Score=128.90 Aligned_cols=66 Identities=23% Similarity=0.332 Sum_probs=54.3
Q ss_pred CCCCCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHH------------------hC---CCCCccccccchhhhHH
Q psy17897 324 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEK------------------LD---LKKNVVRVWFCNQRQKQ 382 (391)
Q Consensus 324 ~~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~q------------------Lg---Ls~~qVrvWFqNRR~K~ 382 (391)
.+++||.|+.|+..|+..||..|+.++||+..++++||.. || |++.+|+|||||||+++
T Consensus 6 ~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~k~ 85 (99)
T 1lfb_A 6 TKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEE 85 (99)
T ss_dssp -------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHHHH
Confidence 3577889999999999999999999999999999999999 87 99999999999999999
Q ss_pred hhHHhhh
Q psy17897 383 KRMKFAA 389 (391)
Q Consensus 383 KR~~k~a 389 (391)
|++.+.+
T Consensus 86 k~k~~~~ 92 (99)
T 1lfb_A 86 AFRHKLA 92 (99)
T ss_dssp SCCC---
T ss_pred HHhchhh
Confidence 8876543
No 67
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=8.9e-16 Score=120.55 Aligned_cols=60 Identities=18% Similarity=0.384 Sum_probs=54.6
Q ss_pred CCCCcccChHHHHHHHHHh-hcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 328 KRKRTSIAAPEKRSLEAYF-AVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 328 KRkRT~ft~~Ql~~LE~~F-~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
.++|+.++.+|+..||+.| ..++||+..++.+||.++||++++|+|||||||+|+|+...
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~~ 69 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSGP 69 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCCC
Confidence 4456667788999999999 99999999999999999999999999999999999998653
No 68
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=1.4e-15 Score=123.87 Aligned_cols=57 Identities=18% Similarity=0.344 Sum_probs=53.7
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
.||..|+.+||..|..++||+..++.+||.++||++.+|+|||||||+|+|+.++..
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~~ 75 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQAV 75 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSCC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHhh
Confidence 489999999999999999999999999999999999999999999999999876543
No 69
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.55 E-value=2.4e-15 Score=117.32 Aligned_cols=59 Identities=29% Similarity=0.389 Sum_probs=55.8
Q ss_pred CCCCCCCcccChHHHHHHHHHhhc-CCCCCHHHHHHHHHHhCCCCCccccccchhhhHHh
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAV-QPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~-n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~K 383 (391)
.++||.||.|+.+|+..|+.+|+. ++||+.+.|..||.++||++++|+|||||||.-.|
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~ 64 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeec
Confidence 478899999999999999999999 99999999999999999999999999999997654
No 70
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.54 E-value=1.2e-15 Score=119.35 Aligned_cols=58 Identities=29% Similarity=0.469 Sum_probs=54.0
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhhc
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAAQ 390 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~aq 390 (391)
..+..|+..||+.|..++||+..++.+||.++||++++|+|||||||+|+||...+.+
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~~~~ 67 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQLSSE 67 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSSSCC
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhhhhh
Confidence 4678999999999999999999999999999999999999999999999999876543
No 71
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.54 E-value=2.4e-15 Score=116.74 Aligned_cols=52 Identities=19% Similarity=0.358 Sum_probs=49.8
Q ss_pred ChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHH
Q psy17897 335 AAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386 (391)
Q Consensus 335 t~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~ 386 (391)
+.+|+..||+.|..++||+..++.+||..+||++++|++||||||+|+|+..
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 5789999999999999999999999999999999999999999999999864
No 72
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.51 E-value=5.2e-15 Score=113.73 Aligned_cols=55 Identities=27% Similarity=0.471 Sum_probs=51.1
Q ss_pred CcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 331 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 331 RT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
+..++..|+..||+.|..++||+..++.+||.++||++++|+|||||||+|.++.
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~~ 61 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISV 61 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSCS
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCCC
Confidence 4456689999999999999999999999999999999999999999999998764
No 73
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.49 E-value=4.8e-15 Score=114.43 Aligned_cols=51 Identities=24% Similarity=0.511 Sum_probs=47.2
Q ss_pred hHHHHHHHHHh-hcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHH
Q psy17897 336 APEKRSLEAYF-AVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386 (391)
Q Consensus 336 ~~Ql~~LE~~F-~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~ 386 (391)
..++..||+.| ..++||+..++.+||.+|||+++||++||||||+|+|+..
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~~ 60 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPSG 60 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCSS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCCC
Confidence 35799999999 6799999999999999999999999999999999999754
No 74
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.42 E-value=4.7e-14 Score=109.09 Aligned_cols=57 Identities=21% Similarity=0.324 Sum_probs=50.5
Q ss_pred cccChHHHHHHHHHhh---cCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 332 TSIAAPEKRSLEAYFA---VQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 332 T~ft~~Ql~~LE~~F~---~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
..|+.+++..|+.+|. .++||+..++.+||.++||++.+|++||+|||+|+||....
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 3789999999999999 99999999999999999999999999999999999986543
No 75
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.37 E-value=1.7e-13 Score=107.35 Aligned_cols=47 Identities=23% Similarity=0.498 Sum_probs=44.6
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHH
Q psy17897 336 APEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQ 382 (391)
Q Consensus 336 ~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~ 382 (391)
++|+..|+++|..|++|+.+++..||..+||++++|||||||||++.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 46899999999999999999999999999999999999999999854
No 76
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.24 E-value=2.8e-12 Score=104.91 Aligned_cols=57 Identities=18% Similarity=0.264 Sum_probs=52.6
Q ss_pred cccChHHHHHHHHHhhc---CCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 332 TSIAAPEKRSLEAYFAV---QPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 332 T~ft~~Ql~~LE~~F~~---n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
..|+.+++.+|+.+|.. ++||+.+++.+||+++||++.||++||+|+|.|.|+...+
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~~ 69 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDMLR 69 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHHH
Confidence 45788999999999987 9999999999999999999999999999999999987654
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.12 E-value=6e-12 Score=123.69 Aligned_cols=56 Identities=25% Similarity=0.411 Sum_probs=52.9
Q ss_pred CCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHh
Q psy17897 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383 (391)
Q Consensus 328 KRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~K 383 (391)
++.|+.|+..++..||+.|..++||+..+|.+||+++||+++||+|||||||+|+|
T Consensus 366 ~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 366 TAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 45577899999999999999999999999999999999999999999999999976
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.31 E-value=1.1e-07 Score=65.74 Aligned_cols=21 Identities=33% Similarity=0.713 Sum_probs=18.6
Q ss_pred CccccccchhhhHHhhHHhhh
Q psy17897 369 NVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 369 ~qVrvWFqNRR~K~KR~~k~a 389 (391)
+||+|||||||+|+||.....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~~ 21 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFND 21 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHHH
T ss_pred CCceeccHHHHHHHHHHhHHH
Confidence 589999999999999987753
No 79
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=96.71 E-value=0.00016 Score=68.34 Aligned_cols=133 Identities=16% Similarity=0.170 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC--ChhhhhhhhHHHH---HHHHHHHHHhhh
Q psy17897 237 LEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL--SHNNMIALKPILQ---AWLEEAEAQAKN 311 (391)
Q Consensus 237 Le~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL--S~knm~KLkPlL~---kWLeeaE~~~~~ 311 (391)
-+.|...+|+.|...|+||.+++..+| +|+++|+++|+-.. +.....++-..|. .||-..+.....
T Consensus 28 ~~~~~~~l~~~r~~~g~t~~~la~~~g---------~s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~~l~~~~~~~~~ 98 (311)
T 4ich_A 28 SDELRRRVRGLIHSRPGAQREFAAAIG---------LDESKLSKSLNGTRRFSPHELVRIAEHSGVTVNWLINGRDDART 98 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHCCCCHHHHHHHhC---------CCHHHHHHHHcCCCCCCHHHHHHHHHHHCCChhhhhcCCCcccc
Confidence 457999999999999999999999885 89999999997543 3333333333222 244332222111
Q ss_pred cCCCCCCCCCCCCCCCCCCCcccCh-HHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 312 KRRDPDAPSVLPAGEKKRKRTSIAA-PEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 312 ~~~~~~~~~~~~~~~kKRkRT~ft~-~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
....+ .+......++++.+..-+. .-+......|.+..|-. ....+||++.|+++..|..+|.|+..
T Consensus 99 ~~~~~-~~~~~~~~~~~~~~~~~~r~~il~aa~~l~~~~G~~~-~T~~~IA~~AGvs~gtlY~yF~sKe~ 166 (311)
T 4ich_A 99 VAAVP-APTARSRSAPAGEPQSEARRRILETAWRLIARRGYHN-VRIHDIASELGTSNATIHYHFPSKKD 166 (311)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred ccCCC-CcccccCCCCCccchhhHHHHHHHHHHHHHHHcCCcc-CCHHHHHHHhCCCchhHHHhCCCHHH
Confidence 00000 0000000111111111111 12233444566655432 34668899999999999999999764
No 80
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=95.30 E-value=0.013 Score=48.14 Aligned_cols=46 Identities=22% Similarity=0.328 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChh
Q psy17897 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHN 289 (391)
Q Consensus 235 ~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~k 289 (391)
.-.++|.+.+|..|...|+||.+++..+| +|+++|+++|+=..++.
T Consensus 32 ~l~~~lG~~ir~~R~~~glTQ~eLA~~~g---------vs~~~is~~E~G~~~~~ 77 (101)
T 4ghj_A 32 ALAEEIGDRLKQARLNRDLTQSEVAEIAG---------IARKTVLNAEKGKVQLD 77 (101)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHT---------SCHHHHHHHHTTCCBHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHcC---------CCHHHHHHHHCCCCCHH
Confidence 44567999999999999999999999985 89999999998766554
No 81
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=94.58 E-value=0.084 Score=39.77 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCCh
Q psy17897 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSH 288 (391)
Q Consensus 235 ~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~ 288 (391)
.+...|...++..|...|+||.+++..+| +++++|+++|+-...+
T Consensus 6 ~~~~~~~~~l~~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g~~~~ 50 (84)
T 2ef8_A 6 HRYRCLVQLLTKLRKEASLSQSELAIFLG---------LSQSDISKIESFERRL 50 (84)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHcCCCCC
Confidence 56788999999999999999999999985 8999999999865443
No 82
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=94.56 E-value=0.022 Score=44.26 Aligned_cols=45 Identities=29% Similarity=0.389 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCCh
Q psy17897 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSH 288 (391)
Q Consensus 235 ~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~ 288 (391)
.+.+.|...++..|...|+||.+++..++ +++++|+++|+=...+
T Consensus 10 ~~~~~~g~~l~~~R~~~gltq~elA~~~g---------is~~~is~~E~G~~~p 54 (86)
T 3eus_A 10 PEHVYLCQRLRQARLDAGLTQADLAERLD---------KPQSFVAKVETRERRL 54 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHTT---------CCHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhC---------cCHHHHHHHHCCCCCC
Confidence 55677999999999999999999999985 8999999999765443
No 83
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=94.13 E-value=0.032 Score=41.02 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCC
Q psy17897 234 PRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLT 285 (391)
Q Consensus 234 ~~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~Lq 285 (391)
.+.++.|...++..|...|+||.+++..+| +++++++++|+-.
T Consensus 8 ~~~~~~~~~~l~~~r~~~g~s~~~lA~~~g---------is~~~i~~~e~g~ 50 (74)
T 1y7y_A 8 YADLVKFGQRLRELRTAKGLSQETLAFLSG---------LDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCC
Confidence 467788999999999999999999999985 8899999998754
No 84
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=94.04 E-value=0.034 Score=42.25 Aligned_cols=43 Identities=21% Similarity=0.281 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 235 ~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
++...|...+++.|...|+||.+++..+| +++++++++|+-..
T Consensus 10 ~~~~~~~~~l~~~R~~~gltq~elA~~~g---------is~~~is~~e~g~~ 52 (83)
T 3f6w_A 10 ARYQALLDLLLEARSAAGITQKELAARLG---------RPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCCC
Confidence 45678999999999999999999999985 89999999997553
No 85
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=93.92 E-value=0.038 Score=41.98 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 234 PRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 234 ~~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
.++...|...++..|...|+||.+++..+| +++++++++|+-...
T Consensus 7 ~~~~~~l~~~l~~~r~~~gltq~~lA~~~g---------vs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 7 LEDARRLKAIWEKKKNELGLSYESVADKMG---------MGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCHHHHHHHTT---------SCHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHhC---------cCHHHHHHHHcCCCC
Confidence 355667889999999999999999999985 899999999876544
No 86
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=93.50 E-value=0.05 Score=41.26 Aligned_cols=43 Identities=23% Similarity=0.218 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 235 ~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
...+.|...++..|...|+||.+++..++ +++++++++|+-..
T Consensus 7 ~~~~~~g~~lk~~R~~~glsq~~lA~~~g---------is~~~i~~~e~g~~ 49 (82)
T 3s8q_A 7 FLLSKVSFVIKKIRLEKGMTQEDLAYKSN---------LDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHhC---------cCHHHHHHHHCCCC
Confidence 34667999999999999999999999985 89999999997653
No 87
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=93.15 E-value=0.022 Score=41.60 Aligned_cols=40 Identities=30% Similarity=0.433 Sum_probs=34.7
Q ss_pred HHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 239 AFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 239 ~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
.|...++..|...|+||.+++..++ +++++++++|+-...
T Consensus 3 ~~~~~l~~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g~~~ 42 (71)
T 1zug_A 3 TLSERLKKRRIALKMTQTELATKAG---------VKQQSIQLIEAGVTK 42 (71)
T ss_dssp SHHHHHHHHHHHTTCCHHHHHHHHT---------SCHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHcCCCC
Confidence 4788899999999999999999985 899999999876544
No 88
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=92.90 E-value=0.089 Score=40.11 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=32.7
Q ss_pred HHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccC
Q psy17897 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESL 284 (391)
Q Consensus 240 Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~L 284 (391)
|...+|..|...|+||.+++..++ +++++|+++|+-
T Consensus 11 ~~~~ik~~R~~~gltq~elA~~~g---------is~~~is~~E~G 46 (78)
T 3qq6_A 11 IGQRIKQYRKEKGYSLSELAEKAG---------VAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTT
T ss_pred ccHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcC
Confidence 777888889999999999999985 899999999976
No 89
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=92.87 E-value=0.073 Score=39.45 Aligned_cols=42 Identities=21% Similarity=0.278 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 236 ELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 236 eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
-.+.|...++..|...|+||.+++..+| +++++++++|.-..
T Consensus 7 ~~~~~~~~l~~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g~~ 48 (77)
T 2b5a_A 7 IKRKFGRTLKKIRTQKGVSQEELADLAG---------LHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHC---------CCHHHHHHHHCCCC
Confidence 3567999999999999999999999985 89999999997543
No 90
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=92.87 E-value=0.054 Score=45.00 Aligned_cols=44 Identities=20% Similarity=0.296 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 235 ~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
+.+..|...+++.|...|+||.+++..++ +++++|+++|+=...
T Consensus 3 ~~~~~lG~~Lr~~R~~~glSq~eLA~~~g---------is~~~is~iE~G~~~ 46 (112)
T 2wus_R 3 EKWKELGETFRKKREERRITLLDASLFTN---------INPSKLKRIEEGDLK 46 (112)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHSS---------CCHHHHHHHHHTCCT
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCCCC
Confidence 46778999999999999999999999985 899999999987654
No 91
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=92.81 E-value=0.13 Score=41.90 Aligned_cols=44 Identities=14% Similarity=0.207 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 235 ~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
+-.+.|...+++.|...|+||.+++..+| +++++|+++|.-...
T Consensus 17 ~~~~~~g~~lr~~R~~~gltq~elA~~~g---------is~~~is~~E~G~~~ 60 (114)
T 3vk0_A 17 DLRAVLAYNMRLFRVNKGWSQEELARQCG---------LDRTYVSAVERKRWN 60 (114)
T ss_dssp CHHHHHHHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHTTTCCC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCC
Confidence 44567999999999999999999999985 899999999976543
No 92
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=92.67 E-value=0.074 Score=42.79 Aligned_cols=43 Identities=23% Similarity=0.218 Sum_probs=38.0
Q ss_pred HHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 235 ~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
+-.+.|...+++.|...|+||.+++..+| +++++|+++|+-..
T Consensus 24 ~~~~~ig~~lr~~R~~~gltq~elA~~~g---------is~~~is~iE~G~~ 66 (99)
T 3g5g_A 24 FLLSKVSFVIKKIRLEKGMTQEDLAYKSN---------LDRTYISGIERNSR 66 (99)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCCC
Confidence 45678999999999999999999999985 89999999998653
No 93
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=92.66 E-value=0.01 Score=48.87 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=33.1
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
..|...++..|...|+||.+++..+| +++++|+++|.-..
T Consensus 22 ~~~g~~Lk~~R~~~gltq~elA~~~g---------is~~~is~~E~G~~ 61 (111)
T 3mlf_A 22 SNAMKTLKELRTDYGLTQKELGDLFK---------VSSRTIQNMEKDST 61 (111)
T ss_dssp CSSCEEHHHHHHHTTCCHHHHHHHHT---------SCHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCCC
Confidence 34556677779999999999999985 89999999998653
No 94
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=92.65 E-value=0.12 Score=40.46 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=38.1
Q ss_pred HHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 235 ~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
...+.|...++..|...|+||.+++..++ +++++|+++|+-...
T Consensus 5 ~~~~~~~~~lk~~r~~~glsq~~lA~~~g---------is~~~is~~e~G~~~ 48 (94)
T 2kpj_A 5 KQKAIFSENLNSYIAKSEKTQLEIAKSIG---------VSPQTFNTWCKGIAI 48 (94)
T ss_dssp HHHHHHHHHHHHHHTTSSSCHHHHHHHHT---------CCHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHhCCCC
Confidence 35678999999999999999999999985 889999999976543
No 95
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=92.42 E-value=0.073 Score=40.60 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccC
Q psy17897 236 ELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESL 284 (391)
Q Consensus 236 eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~L 284 (391)
..+.|...++..|...|+||.+++..+| +++++|+++|+-
T Consensus 9 ~~~~~~~~l~~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g 48 (88)
T 2wiu_B 9 SPTQLANAMKLVRQQNGWTQSELAKKIG---------IKQATISNFENN 48 (88)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHcC
Confidence 3567889999999999999999999985 889999999974
No 96
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=92.37 E-value=0.18 Score=38.66 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 234 PRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 234 ~~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
......|.+.++..|...|+||.+++..++ +++++|+++|+-..
T Consensus 13 ~~~~~~~~~~l~~~r~~~glsq~elA~~~g---------is~~~is~~e~g~~ 56 (83)
T 2a6c_A 13 MKMRSQLLIVLQEHLRNSGLTQFKAAELLG---------VTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCHHHHHHHHT---------SCHHHHHHHHTTCG
T ss_pred ccccHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCC
Confidence 456778999999999999999999999985 89999999997653
No 97
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=92.33 E-value=0.14 Score=37.90 Aligned_cols=40 Identities=20% Similarity=0.104 Sum_probs=35.6
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
+.|...++..|...|+||.+++..+| +++++|+++|+-..
T Consensus 6 ~~~~~~l~~~r~~~g~sq~~lA~~~g---------is~~~i~~~e~g~~ 45 (78)
T 3b7h_A 6 EFVSEHLMELITQQNLTINRVATLAG---------LNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCC
Confidence 56889999999999999999999985 89999999998654
No 98
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=91.72 E-value=0.088 Score=38.03 Aligned_cols=40 Identities=28% Similarity=0.488 Sum_probs=34.3
Q ss_pred HHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCCh
Q psy17897 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSH 288 (391)
Q Consensus 240 Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~ 288 (391)
|...++..|...|+||.+++..++ +++++++++|+-...+
T Consensus 2 ~~~~l~~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g~~~~ 41 (69)
T 1r69_A 2 ISSRVKSKRIQLGLNQAELAQKVG---------TTQQSIEQLENGKTKR 41 (69)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHT---------SCHHHHHHHHTTSCSS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCC
Confidence 677888999999999999999985 8899999998765443
No 99
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=91.55 E-value=0.02 Score=45.74 Aligned_cols=35 Identities=14% Similarity=0.262 Sum_probs=29.5
Q ss_pred HHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCC
Q psy17897 242 ERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLT 285 (391)
Q Consensus 242 ~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~Lq 285 (391)
+.++..|...|+||.+++..++ +++++|+++|+-.
T Consensus 27 ~rLk~lR~~~glTq~eLA~~~G---------iS~~tis~iE~G~ 61 (88)
T 3t76_A 27 NKLWKLLIDRDMKKGELREAVG---------VSKSTFAKLGKNE 61 (88)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCC
Confidence 4556669999999999999985 8999999998754
No 100
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=91.48 E-value=0.09 Score=39.48 Aligned_cols=39 Identities=23% Similarity=0.519 Sum_probs=33.7
Q ss_pred HHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 240 Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
|...++..|...|+||.+++..++ +++++|+++|+-...
T Consensus 3 ~~~~lk~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g~~~ 41 (77)
T 2k9q_A 3 LSNELKVERIRLSLTAKSVAEEMG---------ISRQQLCNIEQSETA 41 (77)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHTCCSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHcCCCC
Confidence 667888889999999999999985 899999999986544
No 101
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=91.41 E-value=0.097 Score=39.45 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=30.0
Q ss_pred HHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCCh
Q psy17897 243 RFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSH 288 (391)
Q Consensus 243 ~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~ 288 (391)
.++.-|..+|+||.+++..++ +++++|++||.=...+
T Consensus 15 ~lr~~R~~~gltq~elA~~~g---------vs~~tis~~E~G~~~p 51 (73)
T 3fmy_A 15 FIVKVRKKLSLTQKEASEIFG---------GGVNAFSRYEKGNAXP 51 (73)
T ss_dssp HHHHHHHHTTCCHHHHHHHHC---------SCTTHHHHHHTTSSCC
T ss_pred HHHHHHHHcCCCHHHHHHHhC---------cCHHHHHHHHcCCCCC
Confidence 345558999999999999985 8999999999865433
No 102
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.14 E-value=0.067 Score=41.67 Aligned_cols=42 Identities=24% Similarity=0.464 Sum_probs=38.1
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccch
Q psy17897 336 APEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCN 377 (391)
Q Consensus 336 ~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqN 377 (391)
+.-...|+.+|..-+....+.+..|+.+..|+..+|+-||--
T Consensus 15 p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 15 PPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 334578999999999999999999999999999999999954
No 103
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=91.12 E-value=0.1 Score=38.37 Aligned_cols=41 Identities=32% Similarity=0.507 Sum_probs=34.7
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
+.|...++..|...|+||.+++..++ +++++++++|+-...
T Consensus 4 ~~~~~~l~~~r~~~gls~~~lA~~~g---------is~~~i~~~e~g~~~ 44 (76)
T 1adr_A 4 QLMGERIRARRKKLKIRQAALGKMVG---------VSNVAISQWERSETE 44 (76)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCC
Confidence 35788888999999999999999985 889999999875443
No 104
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=91.11 E-value=0.2 Score=35.90 Aligned_cols=41 Identities=32% Similarity=0.507 Sum_probs=35.0
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
+.|...++..|...|+||.+++..++ +++++++++|+-...
T Consensus 4 ~~~~~~l~~~r~~~g~s~~~lA~~~g---------is~~~i~~~e~g~~~ 44 (68)
T 2r1j_L 4 QLMGERIRARRKKLKIRQAALGKMVG---------VSNVAISQWERSETE 44 (68)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHC---------CCHHHHHHHHcCCCC
Confidence 35788889999999999999999985 889999999976544
No 105
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=91.07 E-value=0.19 Score=38.89 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=34.4
Q ss_pred HHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 239 AFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 239 ~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
.|...++..|...|+||.+++..++ +++++|+++|+-..
T Consensus 13 ~~~~~l~~~r~~~glsq~~lA~~~g---------is~~~is~~e~g~~ 51 (91)
T 1x57_A 13 EVGKVIQQGRQSKGLTQKDLATKIN---------EKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHT---------SCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCC
Confidence 5888899999999999999999985 89999999998553
No 106
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=91.00 E-value=0.16 Score=39.20 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=34.3
Q ss_pred HHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 236 ELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 236 eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
..++|...++..|...|+||.+++..+| +++++|+++|+-..
T Consensus 14 ~~~~l~~~l~~~R~~~glsq~~lA~~~g---------is~~~is~~e~g~~ 55 (92)
T 1lmb_3 14 DARRLKAIYEKKKNELGLSQESVADKMG---------MGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCC
Confidence 3455677777778999999999999985 88999999997643
No 107
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=90.66 E-value=0.2 Score=36.53 Aligned_cols=45 Identities=9% Similarity=0.138 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 235 ~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
+..+.|...++..|...|+||.+++..+|. .+++++++++|+-..
T Consensus 4 ~~~~~~g~~l~~~r~~~glsq~~lA~~~g~-------~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 4 EYAKQLGAKLRAIRTQQGLSLHGVEEKSQG-------RWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHTTT-------SSCHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHCC-------cCCHHHHHHHHCCCC
Confidence 446779999999999999999999998741 168889999987543
No 108
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=90.56 E-value=0.13 Score=41.70 Aligned_cols=42 Identities=21% Similarity=0.219 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 236 ELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 236 eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
-.+.|...++..|...|+||.+++..+| +++++|+++|+-..
T Consensus 25 ~~~~~g~~l~~~R~~~glsq~~lA~~~g---------is~~~is~~E~g~~ 66 (117)
T 3f52_A 25 LREALGAALRSFRADKGVTLRELAEASR---------VSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHTT---------SCHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCCC
Confidence 4567999999999999999999999985 89999999997653
No 109
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=90.55 E-value=0.091 Score=43.32 Aligned_cols=43 Identities=21% Similarity=0.352 Sum_probs=37.5
Q ss_pred HHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 236 ELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 236 eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
++..|...++..|...|+||.+++..+| +|+++|+++|+-...
T Consensus 9 ~~~~~g~~lk~~R~~~glsq~~lA~~~g---------is~~~is~~E~g~~~ 51 (126)
T 3ivp_A 9 DFRALGLAIKEARKKQGLTREQVGAMIE---------IDPRYLTNIENKGQH 51 (126)
T ss_dssp CTHHHHHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHHSCCC
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHhC---------cCHHHHHHHHCCCCC
Confidence 4667899999999999999999999985 899999999976543
No 110
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=90.24 E-value=0.12 Score=40.91 Aligned_cols=41 Identities=20% Similarity=0.151 Sum_probs=34.1
Q ss_pred HHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCCh
Q psy17897 239 AFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSH 288 (391)
Q Consensus 239 ~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~ 288 (391)
.|...++..|...|+||.+++..++ +++++|++||.-...+
T Consensus 30 ~~~~~lk~~R~~~glsq~elA~~lg---------vs~~~is~~E~G~~~p 70 (99)
T 2ppx_A 30 PRMPRIKIIRRALKLTQEEFSARYH---------IPLGTLRDWEQGRSEP 70 (99)
T ss_dssp --CCHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHhC---------cCHHHHHHHHcCCCCC
Confidence 5788899999999999999999985 8999999999865444
No 111
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=90.00 E-value=0.28 Score=40.96 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 237 LEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 237 Le~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
...|...++..|...|+||.+++..+| ++|++|+++|+-..
T Consensus 38 ~~~lg~~L~~~R~~~glTQ~eLA~~lG---------is~~~Is~iE~G~~ 78 (120)
T 2o38_A 38 KLRLAYALNAVIDRARLSQAAAAARLG---------INQPKVSALRNYKL 78 (120)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCC
Confidence 345889999999999999999999985 89999999998654
No 112
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=89.80 E-value=0.85 Score=36.56 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=35.6
Q ss_pred hHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhhHHHHHHHHHHH
Q psy17897 248 RIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAE 306 (391)
Q Consensus 248 RI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLkPlL~kWLeeaE 306 (391)
+|..|++|.+++..+| ++|+||+.+|+=...++--.++=-.+..||.+-.
T Consensus 28 ~il~GikQ~eLAK~iG---------IsqsTLSaIenG~~~PsL~~kIAk~fg~w~~~~~ 77 (83)
T 2l1p_A 28 DLLKDMNQSSLAKECP---------LSQSMISSIVNSTYYANVSAAKCQEFGRWYKHFK 77 (83)
T ss_dssp HHHTTSCHHHHHHHSS---------SCHHHHHHHHTCSSCCCCCSHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHcC---------CCHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHH
Confidence 3334999999999985 9999999988765433222444456788998754
No 113
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=89.48 E-value=0.28 Score=39.56 Aligned_cols=40 Identities=18% Similarity=0.307 Sum_probs=34.4
Q ss_pred HHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 239 AFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 239 ~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
.|...++..|...|+||.+++..+| +++++++++|.-...
T Consensus 9 ~~~~~l~~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g~~~ 48 (114)
T 3op9_A 9 QFAENLSRLKKEHGLKNHQIAELLN---------VQTRTVAYYMSGETK 48 (114)
T ss_dssp CHHHHHHHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCC
Confidence 4788888899999999999999985 899999999985433
No 114
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=89.00 E-value=0.11 Score=43.76 Aligned_cols=42 Identities=19% Similarity=0.398 Sum_probs=36.5
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCCh
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSH 288 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~ 288 (391)
+.|.+.+|+.|...|+||.+++..++ +++++++++|+=...+
T Consensus 2 ~~~G~~lr~~R~~~gltq~elA~~~g---------is~~~is~iE~g~~~~ 43 (130)
T 3fym_A 2 KTVGEALKGRRERLGMTLTELEQRTG---------IKREMLVHIENNEFDQ 43 (130)
T ss_dssp CCHHHHHHHHHHHTTCCHHHHHHHHC---------CCHHHHHHHHTTCGGG
T ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCCCCC
Confidence 45788899999999999999999985 8999999999877543
No 115
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=88.38 E-value=0.23 Score=38.77 Aligned_cols=39 Identities=13% Similarity=0.146 Sum_probs=32.8
Q ss_pred HHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 240 Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
|...++..|...|+||.+++..++ +++++|+++|+-...
T Consensus 5 ~~~~l~~~r~~~gltq~~lA~~~g---------is~~~is~~e~g~~~ 43 (99)
T 2l49_A 5 ISEKIVLMRKSEYLSRQQLADLTG---------VPYGTLSYYESGRST 43 (99)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHC---------CCHHHHHHHTTTSSC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCC
Confidence 566778889999999999999985 899999999985443
No 116
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=88.31 E-value=0.43 Score=39.50 Aligned_cols=57 Identities=33% Similarity=0.458 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhhhh-HhcC-ccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhhHHHHHHHHHH
Q psy17897 234 PRELEAFAERFKQRR-IKLG-VTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEA 305 (391)
Q Consensus 234 ~~eLe~Fa~~fkqrR-I~lG-lTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLkPlL~kWLeea 305 (391)
.+|.+.++.+|.--+ +..| .||.+|+..+| +|++||+|. + +...++.+.+..||+.-
T Consensus 38 ~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lG---------iS~stISRi-~-----r~L~~l~~~~k~~l~~~ 96 (101)
T 1jhg_A 38 PDEREALGTRVRIIEELLRGEMSQRELKNELG---------AGIATITRG-S-----NSLKAAPVELRQWLEEV 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHC---------CCHHHHHHH-H-----HHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHC---------CChhhhhHH-H-----HHHHHccHHHHHHHHHH
Confidence 355555555554332 3357 99999999996 899999997 2 33567888889999763
No 117
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=88.10 E-value=0.47 Score=39.40 Aligned_cols=37 Identities=19% Similarity=0.210 Sum_probs=30.4
Q ss_pred HHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCCh
Q psy17897 243 RFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSH 288 (391)
Q Consensus 243 ~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~ 288 (391)
.++.-|.++|+||.+++..+| +++++|++||+=...+
T Consensus 75 ~l~~~R~~~glsq~~la~~~g---------~s~~~i~~~E~g~~~p 111 (133)
T 3o9x_A 75 FIVKVRKKLSLTQKEASEIFG---------GGVNAFSRYEKGNAQP 111 (133)
T ss_dssp HHHHHHHHTTCCHHHHHHHHC---------SCTTHHHHHHHTSSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHC---------CCHHHHHHHHCCCCCC
Confidence 466678889999999999985 8899999999865433
No 118
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=87.32 E-value=0.28 Score=39.72 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=35.5
Q ss_pred HHHHHHHhhhhH--hcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 238 EAFAERFKQRRI--KLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 238 e~Fa~~fkqrRI--~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
..|...++..|. ..|+||.+++..++ +++++|+++|.-...
T Consensus 33 ~~~g~~lk~~R~~~~~glsq~elA~~~g---------is~~~is~~E~G~~~ 75 (107)
T 2jvl_A 33 KEVGKAIEQGRQKFEPTMTQAELGKEIG---------ETAATVASYERGTAT 75 (107)
T ss_dssp HHHHHHHHHHHTTSSSCCCHHHHHHHHT---------CCHHHHHHHTTTCSC
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCC
Confidence 558889999999 99999999999985 899999999976543
No 119
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=87.04 E-value=0.57 Score=41.04 Aligned_cols=44 Identities=16% Similarity=0.141 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 235 ~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
.-.+.|...+|+.|...|+||.+++..++ +|+++++++|+-...
T Consensus 7 ~~~~~~~~~l~~~r~~~gltq~~lA~~~g---------is~~~is~~e~g~~~ 50 (192)
T 1y9q_A 7 MFKSQIANQLKNLRKSRGLSLDATAQLTG---------VSKAMLGQIERGESS 50 (192)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHS---------SCHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCC
Confidence 34567999999999999999999999985 899999999976543
No 120
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=86.45 E-value=0.46 Score=37.63 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=31.9
Q ss_pred HHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccC
Q psy17897 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESL 284 (391)
Q Consensus 240 Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~L 284 (391)
|...++..|...|+||.+++..+| +++++++++|+-
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~g---------is~~~i~~~e~g 37 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAG---------VAKSYLSSIERN 37 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTT
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcC
Confidence 466788889999999999999985 899999999986
No 121
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=85.58 E-value=0.86 Score=39.90 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=37.8
Q ss_pred HHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 235 ~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
.....|...+|+.|...|+||.+++..++ +|+++++++|+-..
T Consensus 6 ~~~~~~g~~l~~~r~~~g~s~~~la~~~g---------is~~~ls~~e~g~~ 48 (198)
T 2bnm_A 6 TASTGFAELLKDRREQVKMDHAALASLLG---------ETPETVAAWENGEG 48 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCC
Confidence 34667999999999999999999999985 89999999998755
No 122
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=85.33 E-value=0.26 Score=42.22 Aligned_cols=38 Identities=34% Similarity=0.462 Sum_probs=31.0
Q ss_pred HHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 241 AERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 241 a~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
...++..|...|+||.+++..+| +|+++++++|+-...
T Consensus 70 g~~L~~~R~~~glTq~elA~~lG---------is~s~is~~E~G~~~ 107 (141)
T 3kxa_A 70 GETFVSLRMKKGFTQSELATAAG---------LPQPYLSRIENSKQS 107 (141)
T ss_dssp SCCHHHHHHHTTCCHHHHHHHTT---------CCHHHHHHHHHTCSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCC
Confidence 34556778889999999999985 899999999986533
No 123
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=85.33 E-value=0.28 Score=38.58 Aligned_cols=40 Identities=18% Similarity=0.438 Sum_probs=33.3
Q ss_pred HHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccch----hhhhccCCCCh
Q psy17897 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQST----ICRFESLTLSH 288 (391)
Q Consensus 240 Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQst----IcRfE~LqLS~ 288 (391)
|...++..|...|+||.+++..+| +++++ |+++|+-...+
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~g---------is~~~~~~~is~~E~g~~~p 45 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLAG---------IDEASASARMNQYEKGKHAP 45 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHTT---------CCHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhC---------CCcchhhhHHHHHHCCCCCC
Confidence 456788889999999999999985 88899 99999875433
No 124
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=85.14 E-value=0.11 Score=37.14 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=29.7
Q ss_pred HHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 243 RFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 243 ~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
.++..|...|+||.+++..++ +++++++++|+-...
T Consensus 5 ~l~~~r~~~g~s~~~lA~~~g---------is~~~i~~~e~g~~~ 40 (66)
T 2xi8_A 5 NLKLIREKKKISQSELAALLE---------VSRQTINGIEKNKYN 40 (66)
T ss_dssp CHHHHHHHTTCCHHHHHHHHT---------SCHHHHHHHHTTSCC
T ss_pred HHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCC
Confidence 466778889999999999985 889999999875433
No 125
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=84.82 E-value=0.8 Score=36.22 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=31.0
Q ss_pred HHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCC
Q psy17897 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLT 285 (391)
Q Consensus 240 Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~Lq 285 (391)
|...++..|...|+||.+++..+| +++++|+++|+-.
T Consensus 19 ~g~~l~~~r~~~gltq~~lA~~~g---------is~~~is~~e~g~ 55 (104)
T 3cec_A 19 PGEVIADILDDLDINTANFAEILG---------VSNQTIQEVINGQ 55 (104)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCC
Confidence 455667778889999999999985 8999999999754
No 126
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=82.69 E-value=0.93 Score=36.30 Aligned_cols=38 Identities=5% Similarity=0.033 Sum_probs=32.2
Q ss_pred HHHHHhh-hhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 240 FAERFKQ-RRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 240 Fa~~fkq-rRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
|...++. .|...|+||.+++..+| +++++|+++|.-..
T Consensus 11 ~g~~l~~~~r~~~glsq~~lA~~~g---------is~~~is~~e~g~~ 49 (113)
T 2eby_A 11 PGDILLYEYLEPLDLKINELAELLH---------VHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTTTTTTCCHHHHHHHHT---------SCHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCC
Confidence 6667776 78899999999999986 89999999997543
No 127
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=82.62 E-value=0.19 Score=37.03 Aligned_cols=38 Identities=21% Similarity=0.139 Sum_probs=31.1
Q ss_pred HHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 240 Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
|...++..|...|+||.+++..+| +++++++++|+-..
T Consensus 11 ~~~~l~~~r~~~g~s~~~lA~~~g---------is~~~i~~~e~g~~ 48 (76)
T 3bs3_A 11 MLNRIKVVLAEKQRTNRWLAEQMG---------KSENTISRWCSNKS 48 (76)
T ss_dssp CCBCHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCC
Confidence 455667778889999999999985 88999999987543
No 128
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=82.05 E-value=0.98 Score=33.16 Aligned_cols=36 Identities=17% Similarity=0.225 Sum_probs=29.7
Q ss_pred HHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 242 ERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 242 ~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
..++..|...|+||.+++..+| +++++++++|.-..
T Consensus 11 ~~l~~~r~~~glsq~~lA~~~g---------is~~~is~~e~g~~ 46 (73)
T 3omt_A 11 NRLKSVLAEKGKTNLWLTETLD---------KNKTTVSKWCTNDV 46 (73)
T ss_dssp BCHHHHHHHHTCCHHHHHHHTT---------CCHHHHHHHHTTSS
T ss_pred HHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCC
Confidence 3456668889999999999985 89999999997653
No 129
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=80.62 E-value=4.3 Score=34.37 Aligned_cols=49 Identities=6% Similarity=-0.106 Sum_probs=32.6
Q ss_pred CcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHh-------CCCCCccccccchhh
Q psy17897 331 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL-------DLKKNVVRVWFCNQR 379 (391)
Q Consensus 331 RT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qL-------gLs~~qVrvWFqNRR 379 (391)
+..++.++...+.+.+..++..+..++.....+. .++..+|..|+...+
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~ 136 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKV 136 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHh
Confidence 3456777777888887777777776655433222 367788888886544
No 130
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=80.40 E-value=7.4 Score=30.65 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=30.0
Q ss_pred cccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCC-------CCCccccccch
Q psy17897 332 TSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDL-------KKNVVRVWFCN 377 (391)
Q Consensus 332 T~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgL-------s~~qVrvWFqN 377 (391)
..++.++...+.+....++..+..++.....+.|+ +..+|..|+..
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 45677777888888877777776655543333374 66788888753
No 131
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=80.31 E-value=0.8 Score=35.46 Aligned_cols=37 Identities=16% Similarity=0.212 Sum_probs=30.8
Q ss_pred HHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCC
Q psy17897 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLT 285 (391)
Q Consensus 240 Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~Lq 285 (391)
|...++..|...|+||.+++..+| +++++++++|+-.
T Consensus 9 ~g~~l~~~r~~~gltq~~lA~~~g---------is~~~is~~e~g~ 45 (94)
T 2ict_A 9 PGDIIQESLDELNVSLREFARAME---------IAPSTASRLLTGK 45 (94)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHT---------CCHHHHHHHHHTS
T ss_pred hhHHHHHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHcCC
Confidence 455677778889999999999985 8899999998754
No 132
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=79.84 E-value=1.3 Score=36.41 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=38.5
Q ss_pred CCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhH
Q psy17897 330 KRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQK 381 (391)
Q Consensus 330 kRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K 381 (391)
+|..||.+++..+-..+..+...+. .++|+.+|++..+|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhh
Confidence 5778999999877777755665553 368999999999999999876653
No 133
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=78.46 E-value=1.3 Score=33.40 Aligned_cols=42 Identities=14% Similarity=0.168 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 234 PRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 234 ~~eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
.+..+.|...++..|... ||.+++..+| +++++|+++|+-..
T Consensus 11 ~~~~~~~g~~l~~~R~~~--sq~~lA~~~g---------is~~~is~~E~g~~ 52 (86)
T 2ofy_A 11 LERGQRLGELLRSARGDM--SMVTVAFDAG---------ISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHHHHHHHHTTS--CHHHHHHHHT---------CCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHC--CHHHHHHHhC---------CCHHHHHHHHcCCC
Confidence 445567888888888877 9999999885 89999999998654
No 134
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=77.73 E-value=9.6 Score=31.67 Aligned_cols=48 Identities=8% Similarity=0.001 Sum_probs=32.0
Q ss_pred CcccChHHHHHHHHHhhcCCCCCHHHHHHHH-HHh----C--CCCCccccccchh
Q psy17897 331 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIA-EKL----D--LKKNVVRVWFCNQ 378 (391)
Q Consensus 331 RT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA-~qL----g--Ls~~qVrvWFqNR 378 (391)
+..++.+....+......++..+..++.... .+. | ++..+|..|+...
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 4467788888888888877777766544422 211 5 6778899888643
No 135
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=77.44 E-value=1.3 Score=39.78 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 237 LEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 237 Le~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
+..|.+.+++.|...|+||.+++..+| +++++++++|+-...
T Consensus 15 ~~~~~~~l~~~r~~~g~t~~~lA~~~g---------is~~~i~~~~~g~~~ 56 (236)
T 3bdn_A 15 ARRLKAIYEKKKNELGLSQESVADKMG---------MGQSGVGALFNGINA 56 (236)
T ss_dssp HHHHHHHHHHHTTTTTCCSHHHHHHHT---------SCHHHHHHHTTTTSC
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCC
Confidence 457899999999999999999999985 799999999876433
No 136
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=76.90 E-value=0.95 Score=34.01 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=28.3
Q ss_pred HHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 243 RFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 243 ~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
.++..|...| ||.+++..+| +++++|+++|.-..
T Consensus 3 ~l~~~r~~~g-sq~~lA~~lg---------vs~~~is~~e~g~~ 36 (79)
T 3bd1_A 3 AIDIAINKLG-SVSALAASLG---------VRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHHS-SHHHHHHHHT---------CCHHHHHHHHHHTC
T ss_pred HHHHHHHHhC-CHHHHHHHHC---------CCHHHHHHHHHCCC
Confidence 4566688889 9999999996 89999999987553
No 137
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=76.63 E-value=2.2 Score=34.50 Aligned_cols=43 Identities=9% Similarity=0.149 Sum_probs=31.7
Q ss_pred HHhh-hhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCC--CChhhhhhh
Q psy17897 243 RFKQ-RRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LSHNNMIAL 294 (391)
Q Consensus 243 ~fkq-rRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~Lq--LS~knm~KL 294 (391)
.+++ .|...|+||.+++..+| +++++|+++|+-. .+...+.+|
T Consensus 17 ~Lk~~lr~~~gltq~eLA~~lG---------is~~~is~ie~G~~~~s~~~~~kl 62 (104)
T 3trb_A 17 ILAEELGFLDKMSANQLAKHLA---------IPTNRVTAILNGARSITADTALRL 62 (104)
T ss_dssp HHHHHHHHTTSCCHHHHHHHHT---------SCHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCHHHHHHH
Confidence 3443 37888999999999986 8999999999754 444444443
No 138
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=76.23 E-value=1.7 Score=33.81 Aligned_cols=50 Identities=12% Similarity=0.110 Sum_probs=38.3
Q ss_pred cChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhh
Q psy17897 334 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388 (391)
Q Consensus 334 ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~ 388 (391)
++..++.+|...|...- ...+||+.+|++..+|+++...-|.|.|+.-..
T Consensus 38 L~~~~r~vl~l~~~~g~-----s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 87 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRGW-----STAQIATDLGIAEGTVKSRLHYAVRALRLTLQE 87 (92)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 55677778877554332 367899999999999999999888888876543
No 139
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=76.01 E-value=1 Score=32.43 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=31.9
Q ss_pred CcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccch
Q psy17897 331 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCN 377 (391)
Q Consensus 331 RT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqN 377 (391)
|..|+.+.+.....++... ........++|+++|++..+|+.|...
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 4568888876665555433 221223678999999999999999754
No 140
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=75.82 E-value=2 Score=38.59 Aligned_cols=46 Identities=15% Similarity=0.219 Sum_probs=36.8
Q ss_pred CCHHHHHHHH---------HHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 232 TDPRELEAFA---------ERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 232 ~d~~eLe~Fa---------~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
...+.|-+-+ +.||+-|...|+||.+++.++| +||++|+++|+-..
T Consensus 74 iaPd~LY~~~~~~~~~~s~~~lk~lR~~~glTQ~elA~~LG---------vsr~tis~yE~G~r 128 (170)
T 2auw_A 74 FGRDNVYAWAKEQAGEVSHEMFGDWMHRNNLSLTTAAEALG---------ISRRMVSYYRTAHK 128 (170)
T ss_dssp BCHHHHHHHHHHHTTCCCHHHHHHHHHHTTCCHHHHHHHHT---------SCHHHHHHHHTTSS
T ss_pred CCHHHHHHhhhhhccCCCcHHHHHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHcCCC
Confidence 6667765533 3577778899999999999996 89999999998654
No 141
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=75.55 E-value=1.3 Score=42.82 Aligned_cols=40 Identities=28% Similarity=0.233 Sum_probs=34.8
Q ss_pred HHHHHHHhhhhHh------cCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 238 EAFAERFKQRRIK------LGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 238 e~Fa~~fkqrRI~------lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
+.|...+|..|.. .|+||.+++..+| +|+++|+++|.=..
T Consensus 5 ~~lG~~Lr~lR~~~~~~~~~gLtqeelA~~~g---------vS~~~is~iE~G~~ 50 (292)
T 3pxp_A 5 AAFGKLVQALRREHRDEKGRVWTQEVLAERTQ---------LPKRTIERIENGSL 50 (292)
T ss_dssp HHHHHHHHHHHHTCBCTTSCBCCHHHHHHHHT---------CCHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHccCccCcCCCCHHHHHHHHC---------cCHHHHHHHHCCCC
Confidence 4678889999999 9999999999985 89999999997653
No 142
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=74.83 E-value=0.61 Score=40.08 Aligned_cols=37 Identities=22% Similarity=0.394 Sum_probs=0.0
Q ss_pred HHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCC
Q psy17897 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLT 285 (391)
Q Consensus 240 Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~Lq 285 (391)
|...++..|...|+||.+++..+| +|+++++++|.-.
T Consensus 2 ig~~lk~~R~~~gltq~elA~~lg---------is~~~vs~~e~G~ 38 (158)
T 2p5t_A 2 IGKNIKSLRKTHDLTQLEFARIVG---------ISRNSLSRYENGT 38 (158)
T ss_dssp ----------------------------------------------
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCC
Confidence 566788889999999999999985 8899999987643
No 143
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=74.15 E-value=1.8 Score=33.60 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=32.5
Q ss_pred CCCCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccch
Q psy17897 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCN 377 (391)
Q Consensus 327 kKRkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqN 377 (391)
+|+.+..|+.+++...-..+... . ...+||+++|++..+|..|...
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k~ 61 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCKN 61 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 34456678888765555555432 1 2568899999999999999743
No 144
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=73.82 E-value=1.7 Score=39.37 Aligned_cols=41 Identities=27% Similarity=0.374 Sum_probs=33.9
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCCh
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSH 288 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~ 288 (391)
+.|...+|..|...|+||.+++..+ +|+++|++||.-...+
T Consensus 4 ~~~g~~i~~~R~~~~~tq~~la~~~----------~s~~~~s~~e~g~~~~ 44 (293)
T 3u3w_A 4 EKLGSEIKKIRVLRGLTQKQLSENI----------CHQSEVSRIESGAVYP 44 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHTTT----------SCHHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHh----------CCHHHHHHHHCCCCCC
Confidence 4588899999999999999997664 7889999999765443
No 145
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=72.93 E-value=1.1 Score=30.17 Aligned_cols=42 Identities=10% Similarity=0.100 Sum_probs=28.0
Q ss_pred cChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 334 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 334 ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
++.++...+...+... - ...+||+.+|++..+|..|+.....
T Consensus 6 ~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~~ 47 (52)
T 1jko_C 6 INKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASSI 47 (52)
T ss_dssp SCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC-
T ss_pred CCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHccc
Confidence 4455554444445433 2 3568899999999999999975544
No 146
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=72.63 E-value=1.5 Score=39.90 Aligned_cols=40 Identities=28% Similarity=0.393 Sum_probs=33.1
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCC
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLS 287 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS 287 (391)
..|...+|..|...|+||.+++..+ +|+++|++||+-...
T Consensus 4 ~~~g~~i~~~r~~~~~tq~~la~~~----------~s~~~is~~e~g~~~ 43 (293)
T 2qfc_A 4 EKLGSEIKKIRVLRGLTQKQLSENI----------CHQSEVSRIESGAVY 43 (293)
T ss_dssp HHHHHHHHHHHHHHTCCTTTTTTTT----------SCHHHHHHHHTSSSC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHH----------cCHHHHHHHHCCCCC
Confidence 4588899999999999999997654 688899998876543
No 147
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=72.37 E-value=5.5 Score=32.34 Aligned_cols=44 Identities=11% Similarity=0.130 Sum_probs=29.4
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhC--CCCCccccccchhhh
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLD--LKKNVVRVWFCNQRQ 380 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLg--Ls~~qVrvWFqNRR~ 380 (391)
.++.++...+... ..++..+.. +|+..+| ++..+|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s~~---~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKTAR---DIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCCHH---HHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCCHH---HHHHHHCCCccHHHHHHHHHHCCC
Confidence 4677777666665 444555544 5777888 688899999975544
No 148
>2csf_A DNA-binding protein SATB2; CUT domain, special AT-rich sequence-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=71.29 E-value=1.2 Score=36.74 Aligned_cols=61 Identities=20% Similarity=0.189 Sum_probs=42.7
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhh-----hhhhhHHHHHHHHHHHH
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNN-----MIALKPILQAWLEEAEA 307 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~kn-----m~KLkPlL~kWLeeaE~ 307 (391)
+.++..+++..-+.+++|+-++.... +.+|-|+|.+-.-.-.++. +.+|+ .+..||...|.
T Consensus 20 k~i~~~I~~ELK~~~IsQa~FAk~vl--------nRsQGtLSelLR~~enPkP~~~~lW~~Lk-~m~nWL~Lpe~ 85 (101)
T 2csf_A 20 AAIYDEIQQEMKRAKVSQALFAKVAA--------NKSQGWLCELLRWKENPSPENRTLWENLC-TIRRFLNLPQH 85 (101)
T ss_dssp THHHHHHHHHHHHHTCCHHHHHHHHT--------CCCHHHHHHHHHHCCCCCTTCHHHHHHHH-HHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHH--------HhchhHHHHHHhcccCCCcchhhHHHHHH-HHHHHHcCCHH
Confidence 44455555555666779999988763 3788888886654446667 88887 67899976553
No 149
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=69.73 E-value=6.7 Score=33.29 Aligned_cols=52 Identities=31% Similarity=0.454 Sum_probs=41.3
Q ss_pred CCCCcccChHHHHHHHHHh-hcCCCCCHHHHHHHH-HHh--CCCCCccccccchhh
Q psy17897 328 KRKRTSIAAPEKRSLEAYF-AVQPRPSGEKIAAIA-EKL--DLKKNVVRVWFCNQR 379 (391)
Q Consensus 328 KRkRT~ft~~Ql~~LE~~F-~~n~yPS~~er~~LA-~qL--gLs~~qVrvWFqNRR 379 (391)
+++|.++|.+|+..+-.++ +.++..+..++...| .++ +++..+|..|..|+-
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 6788999999999999999 788888766555533 267 789999999987644
No 150
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=68.57 E-value=2.6 Score=30.40 Aligned_cols=50 Identities=10% Similarity=-0.007 Sum_probs=36.6
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
.+++.++.++...|...- ...+||..+|++..+|+.|...-|.+.|+.-.
T Consensus 15 ~L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~ 64 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALLADAE 64 (70)
T ss_dssp SSCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC---
T ss_pred hCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhh
Confidence 366788888887654331 35689999999999999999888877776543
No 151
>1x2l_A CUT-like 2, homeobox protein CUX-2; CUT domain, human homeobox protein CUX-2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=68.18 E-value=3.7 Score=33.94 Aligned_cols=62 Identities=18% Similarity=0.244 Sum_probs=40.6
Q ss_pred HHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhh-------HHHHHHHHHHHHH
Q psy17897 236 ELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALK-------PILQAWLEEAEAQ 308 (391)
Q Consensus 236 eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLk-------PlL~kWLeeaE~~ 308 (391)
+.++.+..+++..-..+++|..++..+- | .+|.+++.+-+- ++.+.+|+ -.++.||+..|+.
T Consensus 18 dTk~I~~~ike~L~~~~isQ~~FA~~VL-----g---rsQgtlS~lL~~---PkpW~~L~~~Gre~yiRM~nWL~~~er~ 86 (101)
T 1x2l_A 18 DTAEIAFQVKEQLLKHNIGQRVFGHYVL-----G---LSQGSVSEILAR---PKPWRKLTVKGKEPFIKMKQFLSDEQNV 86 (101)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHTT-----C---SCHHHHHHHHHC---CCCGGGCCHHHHHHHHHHHHHHTCTHHH
T ss_pred CHHHHHHHHHHHHHHcCCCHHHHHHHHH-----c---cccchHHHHhcC---CCCHHHHhHhhhHHHHHHHHHccCHHHH
Confidence 3445566677777777889999988753 2 778777764433 44555554 2577899875543
No 152
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=67.04 E-value=2.5 Score=27.66 Aligned_cols=40 Identities=13% Similarity=0.371 Sum_probs=27.6
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccch
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCN 377 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqN 377 (391)
.++.+++..+...+... . ...+||+.+|++..+|+.|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 45666665444455432 2 2568899999999999999854
No 153
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=66.84 E-value=2.6 Score=32.35 Aligned_cols=49 Identities=20% Similarity=0.181 Sum_probs=37.8
Q ss_pred CcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 331 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 331 RT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
-..++..++.+|..+++- ....+||+.+|++..+|+.+..+-+.|.+..
T Consensus 19 ~~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQG------LPNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GGGSCHHHHHHHHHHTTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred HccCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 446888899888885432 2456899999999999999998777776543
No 154
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=65.15 E-value=4.4 Score=38.69 Aligned_cols=39 Identities=23% Similarity=0.240 Sum_probs=32.6
Q ss_pred HHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCCh
Q psy17897 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSH 288 (391)
Q Consensus 240 Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~ 288 (391)
+...+|+.|...|+||.+++..+ +|++++++||+-...+
T Consensus 4 ig~~lk~~R~~~gltq~~la~~~----------is~~~is~~E~g~~~~ 42 (317)
T 2awi_A 4 IGSVLKQIRQELNYHQIDLYSGI----------MSKSVYIKVEADSRPI 42 (317)
T ss_dssp HHHHHHHHHHHTTCCHHHHHTTT----------SCHHHHHHHHTTCSCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHh----------cCHHHHHHHHCCCCCC
Confidence 66789999999999999998543 7899999999875444
No 155
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=62.23 E-value=3.1 Score=30.82 Aligned_cols=47 Identities=28% Similarity=0.244 Sum_probs=34.6
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
.+++.++.+|..+|.. + ...+||+.+|++..+|+.+..+-+.|.+..
T Consensus 16 ~L~~~e~~vl~l~~~g--~----s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 16 TLSERERQVLSAVVAG--L----PNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHCHHHHHHHHHHTTT--C----CHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHcC--C----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 3567777777774322 1 345899999999999999998877776643
No 156
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=61.35 E-value=5.2 Score=32.19 Aligned_cols=47 Identities=15% Similarity=0.096 Sum_probs=36.5
Q ss_pred CcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHh
Q psy17897 331 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383 (391)
Q Consensus 331 RT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~K 383 (391)
...+++.++.+|..+++-. ...+||+.+++++.+|+.+..+-+.|..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLg 78 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLG 78 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 4568888999988766432 2478999999999999999887666654
No 157
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=60.53 E-value=5.1 Score=29.10 Aligned_cols=48 Identities=21% Similarity=0.248 Sum_probs=36.4
Q ss_pred CcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhh
Q psy17897 331 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384 (391)
Q Consensus 331 RT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR 384 (391)
...+++.++.+|..++. .+ ...+||+.+|++..+|+.++.+-+.|.+.
T Consensus 9 ~~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp CCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 34578888888887532 22 35689999999999999999876766654
No 158
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=59.83 E-value=5.7 Score=31.24 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=37.0
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
.++..++.+|..+++-. ...+||+.+|++..+|+.+..+-+.|.+..
T Consensus 27 ~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 27 GLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 57888888888865432 246899999999999999998877776653
No 159
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=59.18 E-value=6.9 Score=32.01 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=36.1
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
.+++.++.++. .|... ....+||+.+|++..+|+.+...-|.|.|+.-+
T Consensus 109 ~L~~~~r~v~~-~~~~g-----~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIRG-----YSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-HHTTT-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777 33322 246789999999999999999888888776544
No 160
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=59.03 E-value=5.6 Score=28.98 Aligned_cols=52 Identities=13% Similarity=0.270 Sum_probs=37.1
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
.+++.++.+|...|-.+.+- .....+||+.+|++..+|+.+...-+.|.|+.
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~ 56 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRHP 56 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSC
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 36778888888887221100 11356899999999999999998777777654
No 161
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=58.03 E-value=6.6 Score=32.28 Aligned_cols=49 Identities=14% Similarity=0.215 Sum_probs=37.8
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHH
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~ 386 (391)
.+++.++.++...|...- ...+||+.+|++..+|+.|...-|.+.|+.-
T Consensus 22 ~L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 356778888887654332 3578999999999999999988888777653
No 162
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=57.74 E-value=4.5 Score=29.39 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=22.3
Q ss_pred hHhcCccchhhhhhhhcCcCCCCcccccchhhhhc
Q psy17897 248 RIKLGVTQADVGKALANLKLPGVGALSQSTICRFE 282 (391)
Q Consensus 248 RI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE 282 (391)
.|..+.||.+++..+| +||++|++||
T Consensus 6 ~i~~~~tq~~lA~~lG---------vs~~~Vs~we 31 (61)
T 1rzs_A 6 VIDHFGTQRAVAKALG---------ISDAAVSQWK 31 (61)
T ss_dssp HHHHHSSHHHHHHHHT---------CCHHHHHHCC
T ss_pred HHHHcCCHHHHHHHhC---------CCHHHHHHHH
Confidence 4555679999999996 8999999999
No 163
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=57.09 E-value=3 Score=32.39 Aligned_cols=48 Identities=15% Similarity=0.015 Sum_probs=36.7
Q ss_pred cccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 332 TSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 332 T~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
..++..++.+|..++.-. ...+||+.+|++..+|+.+..+-+.|.+..
T Consensus 28 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 28 EMLTEREMEILLLIAKGY------SNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGCCSHHHHHHHHHHTTC------CTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 467888888888754322 245789999999999999998877776543
No 164
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=56.11 E-value=6.3 Score=29.09 Aligned_cols=50 Identities=10% Similarity=0.100 Sum_probs=36.3
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHh
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~K 383 (391)
.+++.++.++...|-.... ......+||+.+|++..+|+.|...-+.|.|
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4678888888888741100 0013458999999999999999988777776
No 165
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=54.29 E-value=8.5 Score=31.45 Aligned_cols=48 Identities=10% Similarity=0.223 Sum_probs=37.3
Q ss_pred cChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHH
Q psy17897 334 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386 (391)
Q Consensus 334 ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~ 386 (391)
+++.++.++...|...- ...+||+.+|++..+|+.+...-|.+.|+.-
T Consensus 26 L~~~~r~vl~l~~~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLEDY-----SLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 56777888877654332 3578999999999999999988888877654
No 166
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=53.40 E-value=6.4 Score=30.28 Aligned_cols=50 Identities=8% Similarity=0.187 Sum_probs=36.3
Q ss_pred ccChHHHHHHHHHhhcC--CCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 333 SIAAPEKRSLEAYFAVQ--PRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n--~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
.+++.++.+|...|-.. .-- ...+||..+|++..+|+.|...-+.|.|+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~~~~---s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDGKPK---TLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHccCCCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 35677888888777411 112 356889999999999999998777776653
No 167
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=52.27 E-value=12 Score=32.34 Aligned_cols=40 Identities=5% Similarity=-0.019 Sum_probs=31.0
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCCh
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSH 288 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~ 288 (391)
+.|.+++++.|-.. ||.+++..+| +++++++++|+-...+
T Consensus 8 ~~~~~rl~~~r~~~--tq~elA~~~G---------is~~~i~~~e~g~~~p 47 (189)
T 2fjr_A 8 VDVLDRICEAYGFS--QKIQLANHFD---------IASSSLSNRYTRGAIS 47 (189)
T ss_dssp HHHHHHHHHHHTCS--SHHHHHHHTT---------CCHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHhhc--CHHHHHHHhC---------cCHHHHHHHHhCCCCC
Confidence 45777777777555 9999999985 7999999999865443
No 168
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=49.33 E-value=8 Score=30.04 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=29.9
Q ss_pred CcccChHHHHHHHHHhhcC-CCCCHHHHHHHHHHhCCCCCccccccch
Q psy17897 331 RTSIAAPEKRSLEAYFAVQ-PRPSGEKIAAIAEKLDLKKNVVRVWFCN 377 (391)
Q Consensus 331 RT~ft~~Ql~~LE~~F~~n-~yPS~~er~~LA~qLgLs~~qVrvWFqN 377 (391)
|..|+.+++...-..+... . ....+||+.+|++..+|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g----~s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDG----ASLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGG----SCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCC----ChHHHHHHHHCcCHHHHHHHHHH
Confidence 3467877776554444322 2 13678999999999999999754
No 169
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=48.77 E-value=8.3 Score=29.30 Aligned_cols=31 Identities=6% Similarity=0.039 Sum_probs=24.5
Q ss_pred hhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccC
Q psy17897 245 KQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESL 284 (391)
Q Consensus 245 kqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~L 284 (391)
+..+.+.|+||.+++..+| +++++|.+++.-
T Consensus 15 ~~~l~~~glT~~~LA~~~G---------vs~stls~~~~~ 45 (74)
T 1neq_A 15 IAGLKKRKLSLSALSRQFG---------YAPTTLANALER 45 (74)
T ss_dssp HHHHHTTSCCHHHHHHHHS---------SCHHHHHHTTTS
T ss_pred HHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcC
Confidence 3335577999999999985 889999988663
No 170
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=48.30 E-value=11 Score=33.16 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhhhHhcCc--cchhhhhhhhcCcCCCCcccc-cchhhhhc
Q psy17897 235 RELEAFAERFKQRRIKLGV--TQADVGKALANLKLPGVGALS-QSTICRFE 282 (391)
Q Consensus 235 ~eLe~Fa~~fkqrRI~lGl--TQ~~Vg~ALg~l~~~G~~~fS-QstIcRfE 282 (391)
.+-++|...+++.|-..|+ ||.+++.++| ++ ++++.+++
T Consensus 6 ~~q~~i~~~i~~~~~~~g~~ps~~elA~~lg---------iss~~tv~~~~ 47 (202)
T 1jhf_A 6 ARQQEVFDLIRDHISQTGMPPTRAEIAQRLG---------FRSPNAAEEHL 47 (202)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCHHHHHHHTT---------CSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCccHHHHHHHhC---------CCChHHHHHHH
Confidence 3456788889998989999 9999999985 66 77777654
No 171
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=46.95 E-value=11 Score=32.99 Aligned_cols=49 Identities=14% Similarity=0.142 Sum_probs=37.8
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHH
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~ 386 (391)
.+++.++.+|...|... ....+||+.+|++..+|+.+...-|.|.|+.-
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 35677777777766433 24568999999999999999988888887754
No 172
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=46.02 E-value=11 Score=32.04 Aligned_cols=48 Identities=13% Similarity=0.037 Sum_probs=34.7
Q ss_pred cChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHH
Q psy17897 334 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386 (391)
Q Consensus 334 ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~ 386 (391)
+++.++.++...|-.. ....+||+.+|++..+|+.+...-|.|.|+.-
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4555566665544322 13568999999999999999988888877654
No 173
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=45.63 E-value=0.89 Score=39.65 Aligned_cols=30 Identities=10% Similarity=0.075 Sum_probs=21.7
Q ss_pred CCCCCCCcccChHHHHHHHHHhhcCCCCCH
Q psy17897 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSG 354 (391)
Q Consensus 325 ~~kKRkRT~ft~~Ql~~LE~~F~~n~yPS~ 354 (391)
.+.||.||.|+..|+..|++.|+.++||..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 356788999999999999999999999874
No 174
>1wh6_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=43.34 E-value=8.1 Score=31.85 Aligned_cols=62 Identities=24% Similarity=0.351 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhh-------HHHHHHHHHHHHH
Q psy17897 236 ELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALK-------PILQAWLEEAEAQ 308 (391)
Q Consensus 236 eLe~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLk-------PlL~kWLeeaE~~ 308 (391)
+.++.+..+++.+-..+++|..++..+- | .+|.+++.+-+ .++.+.+|+ -.++.||+..|.+
T Consensus 18 DTk~I~~~ike~L~~~~isQ~~FA~~IL-----g---rsqgtlSdlL~---~PKpW~~L~~~Gre~fiRM~nWL~l~e~q 86 (101)
T 1wh6_A 18 DTLELTRQVKEKLAKNGICQRIFGEKVL-----G---LSQGSVSDMLS---RPKPWSKLTQKGREPFIRMQLWLSDQLGQ 86 (101)
T ss_dssp CHHHHHHHHHHHHHTTTCCHHHHHHHTT-----C---CCHHHHHHHHH---SCCCTTTCCHHHHHHHHHHHHHHHHTTCS
T ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHH-----c---cCcCcHHHHhc---CCCCHHHHhHHhHHHHHHHHHHhCCcHHH
Confidence 3456677788888888899999988653 2 67777665322 334444443 2578899987743
No 175
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=41.84 E-value=18 Score=30.12 Aligned_cols=40 Identities=25% Similarity=0.297 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHhhh-hHhcCccchhhhhhhhcCcCCCCcccccchhhhhc
Q psy17897 234 PRELEAFAERFKQR-RIKLGVTQADVGKALANLKLPGVGALSQSTICRFE 282 (391)
Q Consensus 234 ~~eLe~Fa~~fkqr-RI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE 282 (391)
++|++.++.+++-. .+..|.|+.+|...+| .|-+||+|..
T Consensus 39 ~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG---------~StaTIsRv~ 79 (107)
T 3frw_A 39 INELLSLSQRFEVAKMLTDKRTYLDISEKTG---------ASTATISRVN 79 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHC---------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHC---------ccHHHHHHHH
Confidence 46677777666433 4556999999999985 7889999953
No 176
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=41.17 E-value=16 Score=28.51 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=35.5
Q ss_pred CCCcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHh
Q psy17897 329 RKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383 (391)
Q Consensus 329 RkRT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~K 383 (391)
.....++..++.+|...++-. ...+||+.|+++..+|+....+-+.|..
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~G~------s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEKGF------TNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ----CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 345678999999998776322 3668999999999999998877666543
No 177
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=40.79 E-value=11 Score=26.77 Aligned_cols=30 Identities=27% Similarity=0.345 Sum_probs=23.7
Q ss_pred HhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhcc
Q psy17897 244 FKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283 (391)
Q Consensus 244 fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~ 283 (391)
++..+...| +|..++..++ ++|++|++++.
T Consensus 6 l~~~~~~~g-s~~~~A~~lg---------is~~~vs~~~~ 35 (67)
T 2pij_A 6 LSKYLEEHG-TQSALAAALG---------VNQSAISQMVR 35 (67)
T ss_dssp HHHHHHHTC-CHHHHHHHHT---------SCHHHHHHHHH
T ss_pred HHHHHHHcC-CHHHHHHHHC---------cCHHHHHHHHc
Confidence 344577789 9999999985 88999998773
No 178
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=38.11 E-value=6.4 Score=32.35 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=22.3
Q ss_pred cCccchhhhhhhhcCcCCCCcccccchhhhhccC
Q psy17897 251 LGVTQADVGKALANLKLPGVGALSQSTICRFESL 284 (391)
Q Consensus 251 lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~L 284 (391)
.|+||.+++..+| +|+++|+++|.=
T Consensus 4 ~glTQ~eLA~~~G---------vs~~~is~~E~G 28 (122)
T 1nr3_A 4 RGWSQKKIARELK---------TTRQNVSAIERK 28 (122)
T ss_dssp CSCSSCSTHHHHH---------HCCSSSCCHHHH
T ss_pred cCCCHHHHHHHhC---------CCHHHHHHHHcC
Confidence 7999999999996 888999999875
No 179
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=37.34 E-value=6.8 Score=32.92 Aligned_cols=40 Identities=10% Similarity=0.082 Sum_probs=32.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 339 KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 339 l~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
+..-.+.|.+..| . .....||++.|+++..|..+|.|+-.
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~ 60 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREA 60 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHH
Confidence 4455566877887 5 68899999999999999999998753
No 180
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=37.32 E-value=15 Score=33.73 Aligned_cols=49 Identities=20% Similarity=0.051 Sum_probs=38.4
Q ss_pred cccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHH
Q psy17897 332 TSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386 (391)
Q Consensus 332 T~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~ 386 (391)
..+++.++.+|...++.. ...+||+.+|+++.+|++...+-|.|.|...
T Consensus 196 ~~L~~~erevl~L~~~G~------s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~ 244 (258)
T 3clo_A 196 NILSEREKEILRCIRKGL------SSKEIAATLYISVNTVNRHRQNILEKLSVGN 244 (258)
T ss_dssp TSSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSS
T ss_pred ccCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 457888888888765332 3568999999999999999988888777643
No 181
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=36.40 E-value=19 Score=32.35 Aligned_cols=48 Identities=13% Similarity=0.084 Sum_probs=37.6
Q ss_pred CcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhh
Q psy17897 331 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384 (391)
Q Consensus 331 RT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR 384 (391)
...+++.++.+|.-.++-. .-.+||+.+++++.+|+....|-+.|..-
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 4568999999997765322 34689999999999999999887777653
No 182
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=36.14 E-value=7.2 Score=27.39 Aligned_cols=42 Identities=21% Similarity=0.135 Sum_probs=29.6
Q ss_pred HHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 338 EKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 338 Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
++.+|..+++-. ...+||+.+|+++.+|+.+..+-+.|.+..
T Consensus 3 e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 3 ERQVLKLIDEGY------TNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp HHHHHHHHHTSC------CSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCC------CHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 455565543322 235899999999999999998777776543
No 183
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=35.87 E-value=20 Score=30.20 Aligned_cols=43 Identities=26% Similarity=0.172 Sum_probs=30.8
Q ss_pred HHHHHhhhhH------hcCccchhhhhhhhcCcCCCCcccccchhhhhccCCC
Q psy17897 240 FAERFKQRRI------KLGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 286 (391)
Q Consensus 240 Fa~~fkqrRI------~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqL 286 (391)
|+.+++.=|- ..++||.+|+.+++.. | ..+|+++|+.+|+=..
T Consensus 8 ~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~~---G-~~is~s~is~~E~G~r 56 (135)
T 3r1f_A 8 FAARLNRLFDTVYPPGRGPHTSAEVIAALKAE---G-ITMSAPYLSQLRSGNR 56 (135)
T ss_dssp HHHHHHHHHHHCCCTTSCCCCHHHHHHHHHTT---T-CCCCHHHHHHHHHTSS
T ss_pred HHHHHHHHHHhhcccCCCCCCHHHHHHHHccc---C-CCcCHHHHHHHHCCCC
Confidence 5555554444 2579999999999832 3 2499999999997543
No 184
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=35.61 E-value=17 Score=28.68 Aligned_cols=47 Identities=21% Similarity=0.278 Sum_probs=30.7
Q ss_pred CcccChHHHHHHHHHh-hcC-CCCC-HHHHHHHHHHhCCCCCccccccch
Q psy17897 331 RTSIAAPEKRSLEAYF-AVQ-PRPS-GEKIAAIAEKLDLKKNVVRVWFCN 377 (391)
Q Consensus 331 RT~ft~~Ql~~LE~~F-~~n-~yPS-~~er~~LA~qLgLs~~qVrvWFqN 377 (391)
+..|+.+++...-..+ ... .+.+ .....++|..+|++..+|..|...
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~~ 53 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVRQ 53 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHHH
Confidence 3467877775444433 321 1222 245778999999999999999753
No 185
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=34.47 E-value=20 Score=28.91 Aligned_cols=41 Identities=12% Similarity=0.374 Sum_probs=30.1
Q ss_pred cccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccch
Q psy17897 332 TSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCN 377 (391)
Q Consensus 332 T~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqN 377 (391)
..++.+++......+... . ...+||+.+|++..+|..|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 456777776666666533 2 3567899999999999999864
No 186
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=34.16 E-value=73 Score=24.83 Aligned_cols=49 Identities=12% Similarity=0.120 Sum_probs=38.6
Q ss_pred CCCCcccChHHHHHHHHHhh-----cCCCCCHHHHHHHHHHhC--CCCCccccccc
Q psy17897 328 KRKRTSIAAPEKRSLEAYFA-----VQPRPSGEKIAAIAEKLD--LKKNVVRVWFC 376 (391)
Q Consensus 328 KRkRT~ft~~Ql~~LE~~F~-----~n~yPS~~er~~LA~qLg--Ls~~qVrvWFq 376 (391)
.++...++.++...|.+.|. .+.+.+..+...+.+.+| ++...|+.+|+
T Consensus 24 ~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 24 EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp TCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 34456788999999999985 457899999999988887 56677777774
No 187
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=33.63 E-value=16 Score=31.08 Aligned_cols=41 Identities=10% Similarity=0.106 Sum_probs=31.2
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 339 KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 339 l~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
+....+.|.+..|-. ..+.+||+..|+++..|..+|.|+..
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~ 74 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDD 74 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHH
Confidence 344555677777643 34778999999999999999999754
No 188
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=32.76 E-value=17 Score=24.98 Aligned_cols=36 Identities=14% Similarity=0.125 Sum_probs=24.8
Q ss_pred hHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccc
Q psy17897 336 APEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFC 376 (391)
Q Consensus 336 ~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFq 376 (391)
.++...+...+... + ...+||+.+|++..+|+.|+.
T Consensus 18 ~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 45554444444432 2 356889999999999999974
No 189
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=32.00 E-value=30 Score=29.26 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=20.4
Q ss_pred HhcCccchhhhhhhhcCcCCCCcccccchhhhhc
Q psy17897 249 IKLGVTQADVGKALANLKLPGVGALSQSTICRFE 282 (391)
Q Consensus 249 I~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE 282 (391)
+..|+|+.+|+..++ .|-.||+|..
T Consensus 72 L~~G~syreIA~~~g---------~S~aTIsRv~ 96 (119)
T 3kor_A 72 IKQGYTYATIEQESG---------ASTATISRVK 96 (119)
T ss_dssp HHHTCCHHHHHHHHC---------CCHHHHHHHH
T ss_pred HHcCCCHHHHHHHHC---------CCHHHHHHHH
Confidence 446999999999985 7888999853
No 190
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=32.00 E-value=14 Score=31.17 Aligned_cols=28 Identities=7% Similarity=0.095 Sum_probs=23.0
Q ss_pred HHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 358 AAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 358 ~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
.+||+.+|+++.+|+++...-|.+.|+.
T Consensus 155 ~eIA~~lgis~~tV~~~l~ra~~~Lr~~ 182 (184)
T 2q1z_A 155 RELAAETGLPLGTIKSRIRLALDRLRQH 182 (184)
T ss_dssp CCSTTTCCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 3678888999999999998888777653
No 191
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=31.88 E-value=29 Score=29.11 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=30.2
Q ss_pred cccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccch
Q psy17897 332 TSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCN 377 (391)
Q Consensus 332 T~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqN 377 (391)
..++.+++..+...+... + ...+||+.++++..+|+.|+..
T Consensus 24 ~~~s~e~r~~ii~l~~~G-~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-V----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHH
Confidence 357777776666666533 1 3557899999999999999864
No 192
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=31.06 E-value=28 Score=31.16 Aligned_cols=47 Identities=19% Similarity=0.130 Sum_probs=36.7
Q ss_pred CcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHh
Q psy17897 331 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383 (391)
Q Consensus 331 RT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~K 383 (391)
...+++.++.+|.-.++-. ...+||+.+++++.+|++...|-+.|..
T Consensus 171 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAVGK------TMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCCCHHHHHHHHHHTTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 4568999999987754221 3568999999999999999988777654
No 193
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=30.62 E-value=19 Score=30.54 Aligned_cols=24 Identities=13% Similarity=0.566 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCCCccccccchhhh
Q psy17897 357 IAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 357 r~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
...+|+.+|+...+++.|+...|+
T Consensus 72 ~~~va~~lg~~~~~~RlW~~~~Rq 95 (130)
T 2kvr_A 72 VQSLSQTMGFPQDQIRLWPMQARS 95 (130)
T ss_dssp HHHHHHHHCCCGGGCEEEECCCCB
T ss_pred HHHHHHHhCCCcccEEEEEeecCC
Confidence 567899999999999999976654
No 194
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=30.56 E-value=12 Score=31.54 Aligned_cols=48 Identities=6% Similarity=-0.006 Sum_probs=36.1
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhH
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~ 385 (391)
.+++.++.+|.-.|... ....+||+.+|+++.+|+++...-|.+.|+.
T Consensus 93 ~Lp~~~r~vl~L~~~~g-----~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~ 140 (157)
T 2lfw_A 93 RMTPLSRQALLLTAMEG-----FSPEDAAYLIEVDTSEVETLVTEALAEIEKQ 140 (157)
T ss_dssp TSCTTHHHHHTTTSSSC-----CCHHHHHHTTTSCHHHHHHHHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 46677777776654332 2367899999999999999998888777764
No 195
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=29.29 E-value=5.4 Score=33.61 Aligned_cols=40 Identities=13% Similarity=0.111 Sum_probs=32.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 339 KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 339 l~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
+..-.+.|.+..| . ....+||+..|+++..|..+|.|+-.
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 61 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWG 61 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHH
Confidence 3445556888888 5 57899999999999999999998753
No 196
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=29.04 E-value=18 Score=29.70 Aligned_cols=40 Identities=8% Similarity=0.091 Sum_probs=23.9
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 340 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 340 ~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
..-.+.|.+..|-. ....+||++.|+++..|..+|.|+..
T Consensus 19 ~aA~~lf~~~G~~~-~t~~~IA~~agvs~~t~Y~~F~sK~~ 58 (199)
T 3on2_A 19 ARAESTLEKDGVDG-LSLRQLAREAGVSHAAPSKHFRDRQA 58 (199)
T ss_dssp HHHHHHHHHHCGGG-CCHHHHHHHTC-----CCCSSSSHHH
T ss_pred HHHHHHHHhcChhh-hhHHHHHHHhCCChHHHHHHhCCHHH
Confidence 34444566555432 24678999999999999999999754
No 197
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=28.66 E-value=39 Score=29.42 Aligned_cols=27 Identities=11% Similarity=-0.033 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCccccccchhhhH
Q psy17897 355 EKIAAIAEKLDLKKNVVRVWFCNQRQK 381 (391)
Q Consensus 355 ~er~~LA~qLgLs~~qVrvWFqNRR~K 381 (391)
....+||+.||++..+|..|..+++.+
T Consensus 159 ~s~~~Ia~~l~vs~~Tvyr~l~~~~~~ 185 (193)
T 3uj3_X 159 IPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp ---------------------------
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHhhhc
Confidence 456789999999999999999877653
No 198
>1wiz_A DNA-binding protein SATB2; helix bundle, KIAA1034 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=28.21 E-value=11 Score=31.07 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=37.3
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhhH------HHHHHHHHHHH
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKP------ILQAWLEEAEA 307 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLkP------lL~kWLeeaE~ 307 (391)
++.+..+++...+..++|..++..+-. .+|-++|.+-+--- +.+.+|++ .++.||+..|.
T Consensus 20 k~I~~~Ik~~Lk~~~isQ~~FA~~VL~--------rsQgtLs~lLr~P~--kPW~~L~~Gre~f~RM~nWL~l~e~ 85 (101)
T 1wiz_A 20 PDIYQQVRDELKRASVSQAVFARVAFN--------RTQGLLSEILRKEE--DPRTASQSLLVNLRAMQNFLNLPEV 85 (101)
T ss_dssp TTHHHHHHHHHHHHTCCHHHHHHHHHS--------CCHHHHHHHHHTCC--CTTTCCHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHH--------HhhhHHHHHHcCCC--CCHHHHHHHHHHHHHHHHHhcCCHH
Confidence 445666666667788899999888742 67877776533221 23333333 56779866553
No 199
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=28.09 E-value=31 Score=27.71 Aligned_cols=53 Identities=13% Similarity=0.252 Sum_probs=35.9
Q ss_pred cChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHh
Q psy17897 334 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387 (391)
Q Consensus 334 ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k 387 (391)
+++.++.++...|-.+.+ ......+||..+|++..+|+.....-+.|.|+...
T Consensus 20 Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~ 72 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 72 (99)
T ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 445566677666642210 11235689999999999999998887777776543
No 200
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=27.38 E-value=31 Score=28.98 Aligned_cols=41 Identities=22% Similarity=0.224 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 339 KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 339 l~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
+....+.|.+..|-. ..+.+||++.|+++.++-.+|.|+-.
T Consensus 20 l~aA~~lf~~~G~~~-~s~~~Ia~~agvs~~t~Y~yF~sKe~ 60 (203)
T 3ccy_A 20 IERAAAMFARQGYSE-TSIGDIARACECSKSRLYHYFDSKEA 60 (203)
T ss_dssp HHHHHHHHHHTCTTT-SCHHHHHHHTTCCGGGGTTTCSCHHH
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcCeeeeeeCCHHH
Confidence 344556687777654 34778999999999999999998753
No 201
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=26.49 E-value=28 Score=31.57 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=20.7
Q ss_pred HhcCccchhhhhhhhcCcCCCCcccccchhhhh
Q psy17897 249 IKLGVTQADVGKALANLKLPGVGALSQSTICRF 281 (391)
Q Consensus 249 I~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRf 281 (391)
...|+||.+++..+| +|+.+++|+
T Consensus 21 y~~g~tQ~eIA~~lG---------iSr~~VSR~ 44 (192)
T 1zx4_A 21 KNDGMSQKDIAAKEG---------LSQAKVTRA 44 (192)
T ss_dssp HHTTCCHHHHHHHHT---------CCHHHHHHH
T ss_pred HHcCCCHHHHHHHhC---------cCHHHHHHH
Confidence 457899999999986 889999996
No 202
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=26.43 E-value=36 Score=26.40 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=23.1
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 340 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 340 ~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
....-.|+.|+||+.+-... |. .|||.+|+......
T Consensus 19 RiIkiLyQSNP~P~p~GTrq-aR-------------RNRRRRWR~RQrQI 54 (72)
T 3lph_A 19 RLIKFLYQSNPPPNPEGTRQ-AR-------------RNRRRRWRERQRQI 54 (72)
T ss_dssp HHHHHHHHTCCCCCCCSCHH-HH-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchH-HH-------------HHHHHHHHHHHHHH
Confidence 44555688999998542111 21 48899998776543
No 203
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=26.28 E-value=13 Score=30.67 Aligned_cols=38 Identities=11% Similarity=0.180 Sum_probs=29.4
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 340 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 340 ~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
..-.+.|.+. .......||+..|+++..|..+|.|+..
T Consensus 21 ~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~ 58 (190)
T 2v57_A 21 DAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTD 58 (190)
T ss_dssp HHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 3444556655 5567788999999999999999998753
No 204
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=26.27 E-value=14 Score=32.15 Aligned_cols=44 Identities=9% Similarity=0.045 Sum_probs=0.0
Q ss_pred cChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHH
Q psy17897 334 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQ 382 (391)
Q Consensus 334 ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~ 382 (391)
++..++.+|...|.. .....+||+.+|++..+|+.+...-|.|.
T Consensus 199 L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~tV~~~~~ra~~~L 242 (243)
T 1l0o_C 199 LDERERLIVYLRYYK-----DQTQSEVASRLGISQVQMSRLEKKILQHI 242 (243)
T ss_dssp -------------------------------------------------
T ss_pred CCHHHHHHHHHHHhc-----CCCHHHHHHHHCcCHHHHHHHHHHHHHHc
Confidence 455666666654432 24567899999999999999997666554
No 205
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=26.24 E-value=15 Score=28.13 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCCCccccccchhhh
Q psy17897 357 IAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 357 r~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
..+||+.||++...|..|..++..
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~i 36 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEI 36 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSC
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCC
Confidence 678999999999999999876443
No 206
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=26.24 E-value=16 Score=30.67 Aligned_cols=41 Identities=12% Similarity=0.266 Sum_probs=31.0
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 339 KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 339 l~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
+....+.|.+..|-. ..+.+||+..|+++.++..+|.|+-.
T Consensus 37 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 77 (218)
T 3dcf_A 37 IKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKED 77 (218)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 345555677777643 34678999999999999999998764
No 207
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=26.23 E-value=32 Score=26.78 Aligned_cols=40 Identities=10% Similarity=0.050 Sum_probs=29.0
Q ss_pred ccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccch
Q psy17897 333 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCN 377 (391)
Q Consensus 333 ~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqN 377 (391)
.++.+++..+...+.. .+ + ..+||+.+|++..+|+.|+..
T Consensus 17 ~~s~~~r~~i~~~~~~-g~-s---~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAAD-GI-R---PCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHHT-TC-C---HHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHc-CC-C---HHHHHHHHCcCHHHHHHHHHH
Confidence 4667766666555653 22 2 457899999999999999864
No 208
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=25.74 E-value=27 Score=28.94 Aligned_cols=41 Identities=17% Similarity=0.213 Sum_probs=30.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 339 KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 339 l~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
+....+.|.+..|-. .....||++.|+++.++..+|.|+-.
T Consensus 22 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 62 (211)
T 3him_A 22 RAAAIEVFAAKGYGA-TTTREIAASLDMSPGAVYPHYKTKES 62 (211)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHTTCCTTSSTTTCSSHHH
T ss_pred HHHHHHHHHHcCCCc-CCHHHHHHHhCCCcChhhhcCCCHHH
Confidence 344555677666542 34678999999999999999998753
No 209
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=25.51 E-value=43 Score=29.85 Aligned_cols=49 Identities=8% Similarity=0.091 Sum_probs=32.6
Q ss_pred CcccChHH-HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 331 RTSIAAPE-KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 331 RT~ft~~Q-l~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
|...+.++ +..-.+.|.+..|-. -.+..||+++|+++..+...|.||..
T Consensus 13 ~~~~~r~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~ 62 (237)
T 2hxo_A 13 QEPLSRERIVGAAVELLDTVGERG-LTFRALAERLATGPGAIYWHITGKAE 62 (237)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTTT-CCHHHHHHHHTSCGGGGGGTCCCHHH
T ss_pred CCccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHHCCChHHHHHhcCCHHH
Confidence 33444433 344555677666543 34678999999999999999999753
No 210
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=24.97 E-value=33 Score=29.66 Aligned_cols=41 Identities=5% Similarity=0.066 Sum_probs=31.1
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 339 KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 339 l~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
+....+.|.+..|-. ..+.+||+..|+++..|..+|.|+-.
T Consensus 36 l~aA~~lf~~~G~~~-~t~~~IA~~Agvs~~t~Y~~F~sKe~ 76 (230)
T 2iai_A 36 LSVAVQVFIERGYDG-TSMEHLSKAAGISKSSIYHHVTGKEE 76 (230)
T ss_dssp HHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHTTTCSSHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHHCCChhHHHHhCCCHHH
Confidence 455566677666543 34678999999999999999998753
No 211
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=24.85 E-value=17 Score=30.40 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=25.0
Q ss_pred HHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 343 EAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 343 E~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
+..|.+..|-. ....+||++.|+++..+..+|.|+..
T Consensus 35 ~~lf~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~ 71 (212)
T 3nxc_A 35 LMLESSDGSQR-ITTAKLAASVGVSEAALYRHFPSKTR 71 (212)
T ss_dssp HHHHC-------CCHHHHHHHTTSCHHHHHTTCSSHHH
T ss_pred HHHHhcCChhh-cCHHHHHHHhCCChhHHHHHCCCHHH
Confidence 33556555433 44778999999999999999998764
No 212
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=24.31 E-value=39 Score=27.98 Aligned_cols=31 Identities=26% Similarity=0.134 Sum_probs=24.6
Q ss_pred cCccchhhhhhhhcCcCCCCcccccchhhhhccCC
Q psy17897 251 LGVTQADVGKALANLKLPGVGALSQSTICRFESLT 285 (391)
Q Consensus 251 lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~Lq 285 (391)
.++||.+++.+++.. | ..+|+++|+.+|+=.
T Consensus 23 ~~lT~~elA~~~~~~---G-~~iS~s~is~iE~G~ 53 (123)
T 3qwg_A 23 GPHTSAEVIAALKAE---G-ITMSAPYLSQLRSGN 53 (123)
T ss_dssp CSCCHHHHHHHHHHT---T-CCCCHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHccc---C-CCcCHHHHHHHHcCC
Confidence 369999999999832 3 249999999999754
No 213
>1wh8_A CUT-like 2, homeobox protein CUX-2; CUT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Homo sapiens} SCOP: a.35.1.7
Probab=24.23 E-value=52 Score=27.43 Aligned_cols=60 Identities=20% Similarity=0.303 Sum_probs=37.2
Q ss_pred HHHHHHHhhhhHhcCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhh-------HHHHHHHHHHHHH
Q psy17897 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALK-------PILQAWLEEAEAQ 308 (391)
Q Consensus 238 e~Fa~~fkqrRI~lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLk-------PlL~kWLeeaE~~ 308 (391)
++.+..+++..-..+++|..++..+- | .+|.+++.+.+ .++.+.+|+ -.++.||+..|..
T Consensus 30 k~I~~~ikewL~~~~isQ~~FA~~IL-----g---rsQgtlSdlL~---~PkpW~~L~~~GRe~yiRM~nWL~l~e~~ 96 (111)
T 1wh8_A 30 YSITKRVKEVLTDNNLGQRLFGESIL-----G---LTQGSVSDLLS---RPKPWHKLSLKGREPFVRMQLWLNDPHNV 96 (111)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHTT-----C---CCHHHHHHHHH---SCCCTTTSCHHHHHHHHHHHHHHHCTTHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHh-----c---cCcCcHHHHHc---CCCCHHHHhHhhhHHHHHHHHHhcChHHH
Confidence 44556666667777889998887653 2 67777666332 233333333 2577899877643
No 214
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=23.63 E-value=29 Score=31.15 Aligned_cols=49 Identities=10% Similarity=0.126 Sum_probs=33.1
Q ss_pred CcccChHH-HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 331 RTSIAAPE-KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 331 RT~ft~~Q-l~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
|...+.++ +..-.+.|.+..|-. .....||+++|+++..|..+|.||..
T Consensus 26 ~~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~hF~~K~~ 75 (241)
T 2hxi_A 26 RRRWSTEQILDAAAELLLAGDAET-FSVRKLAASLGTDSSSLYRHFRNKTE 75 (241)
T ss_dssp --CCCHHHHHHHHHHHHSSSSCCC-CCHHHHHHHTTSCHHHHHHHTSSHHH
T ss_pred chhhHHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCcCHHHHHHHcCCHHH
Confidence 33444433 344556677766543 34668999999999999999999753
No 215
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=23.54 E-value=22 Score=29.35 Aligned_cols=40 Identities=20% Similarity=0.097 Sum_probs=30.0
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 340 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 340 ~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
..-.+.|.+..|-. .....||+..|+++..|..+|.|+..
T Consensus 24 ~aa~~l~~~~G~~~-~s~~~Ia~~agvs~~t~Y~~F~sK~~ 63 (206)
T 3kz9_A 24 EIALEVFARRGIGR-GGHADIAEIAQVSVATVFNYFPTRED 63 (206)
T ss_dssp HHHHHHHHHSCCSS-CCHHHHHHHHTSCHHHHHHHCCSHHH
T ss_pred HHHHHHHHhcCccc-ccHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 34455577776643 33678999999999999999999753
No 216
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=23.40 E-value=48 Score=30.66 Aligned_cols=48 Identities=15% Similarity=0.095 Sum_probs=38.1
Q ss_pred CcccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhh
Q psy17897 331 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384 (391)
Q Consensus 331 RT~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR 384 (391)
...+|..++.+|.-..+-. ...+||+.|++++++|+....|-+.|..-
T Consensus 195 ~~~Lt~re~~vl~~~~~G~------s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMSRGK------TNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCCCHHHHHHHHHHHTTC------CHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 3578999999998775322 35689999999999999999888877653
No 217
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=23.39 E-value=50 Score=28.84 Aligned_cols=34 Identities=12% Similarity=0.012 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhCCCCCccccccchhhhHHhhHH
Q psy17897 353 SGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386 (391)
Q Consensus 353 S~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~ 386 (391)
.......||+.||++..+|..|..+.+..++..+
T Consensus 157 ~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~~~~~~ 190 (193)
T 3plo_X 157 QGIPRKQVALIYDVALSTLYKKHPAKRAHIENDD 190 (193)
T ss_dssp ----------------------------------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHhhhHHhhhhcc
Confidence 3445778999999999999999988887766543
No 218
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=23.09 E-value=65 Score=23.44 Aligned_cols=41 Identities=7% Similarity=-0.018 Sum_probs=31.4
Q ss_pred cccChHHHHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhh
Q psy17897 332 TSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQR 379 (391)
Q Consensus 332 T~ft~~Ql~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR 379 (391)
..++.+.+..+.+....+ ..++|+.+|++..+|..|=.+++
T Consensus 9 ~~~~g~~lr~~R~~~glt-------q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 9 ETVAPEFIVKVRKKLSLT-------QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCHHHHHHHHHHTTCC-------HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred CCCCHHHHHHHHHHcCCC-------HHHHHHHhCcCHHHHHHHHcCCC
Confidence 457777777776654332 56899999999999999988765
No 219
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=22.61 E-value=22 Score=31.10 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=31.9
Q ss_pred CcccChHH-HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 331 RTSIAAPE-KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 331 RT~ft~~Q-l~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
|...+.+. +..-.+.|.+..|- ...+..||+.+|+++..|..+|.||..
T Consensus 22 r~~~tr~~Il~aA~~l~~~~G~~-~~s~~~IA~~aGvs~~tlY~~F~~K~~ 71 (211)
T 3fiw_A 22 MTKMNRETVITEALDLLDEVGLD-GVSTRRLAKRLGVEQPSLYWYFRTKRD 71 (211)
T ss_dssp --CCCHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHTSCTHHHHTTCSSHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCcc-cCCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 33344433 34445556655543 224678999999999999999998754
No 220
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=22.46 E-value=19 Score=29.62 Aligned_cols=41 Identities=15% Similarity=0.104 Sum_probs=30.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 339 KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 339 l~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
+....+.|.+..|-. .....||+..|+++..|..+|.|+..
T Consensus 16 l~aa~~lf~~~G~~~-~t~~~IA~~agvs~~tlY~~F~sK~~ 56 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSG-VGLNEILQSAGVPKGSFYHYFKSKEQ 56 (197)
T ss_dssp HHHHHHHHHHHCSTT-CCHHHHHHHHTCCHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHCCccc-CCHHHHHHHhCCChhhHHHHcCCHHH
Confidence 344555576666543 23668999999999999999999764
No 221
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=22.42 E-value=17 Score=26.84 Aligned_cols=23 Identities=22% Similarity=0.569 Sum_probs=20.6
Q ss_pred HHHHHHHhCCCCCccccccchhh
Q psy17897 357 IAAIAEKLDLKKNVVRVWFCNQR 379 (391)
Q Consensus 357 r~~LA~qLgLs~~qVrvWFqNRR 379 (391)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 56899999999999999998765
No 222
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=22.03 E-value=15 Score=30.46 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=29.6
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 340 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 340 ~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
....+.|.+..|-. ..+.+||++.|+++..+..+|.|+-.
T Consensus 21 ~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~~ 60 (203)
T 3f1b_A 21 DAAVDVFSDRGFHE-TSMDAIAAKAEISKPMLYLYYGSKDE 60 (203)
T ss_dssp HHHHHHHHHHCTTT-CCHHHHHHHTTSCHHHHHHHCCSHHH
T ss_pred HHHHHHHHHcCccc-ccHHHHHHHhCCchHHHHHHhCCHHH
Confidence 34445566666532 34678999999999999999998754
No 223
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=21.91 E-value=24 Score=28.67 Aligned_cols=37 Identities=16% Similarity=0.190 Sum_probs=26.3
Q ss_pred cCccchhhhhhhhcCcCCCCcccccchhhhhccCCCChhhhhhhhHHH
Q psy17897 251 LGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPIL 298 (391)
Q Consensus 251 lGlTQ~~Vg~ALg~l~~~G~~~fSQstIcRfE~LqLS~knm~KLkPlL 298 (391)
.+++|..|+.++| ++.++|+||+.-. +..+|++--++
T Consensus 22 a~~gq~~vA~~iG---------V~~StISR~k~~~--~~~~~~lLa~l 58 (97)
T 1xwr_A 22 AMLGTEKTAEAVG---------VDKSQISRWKRDW--IPKFSMLLAVL 58 (97)
T ss_dssp HHHCHHHHHHHHT---------CCTTTHHHHHHHH--HHHHHHHHHHH
T ss_pred HHHhHHHHHHHhC---------CCHHHHHHHHhhh--HHHHHHHHHHH
Confidence 4789999999996 7889999987622 22455544443
No 224
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=21.72 E-value=25 Score=29.58 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=32.1
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 340 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 340 ~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
..-.+.|.+..| . .....||++.|+++..|..+|.|+..
T Consensus 20 ~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~ 58 (196)
T 2qwt_A 20 EVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQA 58 (196)
T ss_dssp HHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHH
T ss_pred HHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHH
Confidence 444556888887 5 67899999999999999999999753
No 225
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=21.35 E-value=24 Score=29.56 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=29.8
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhh
Q psy17897 339 KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQR 379 (391)
Q Consensus 339 l~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR 379 (391)
+....+.|.+..|-. ..+..||++.|+++..|...|.|+-
T Consensus 23 l~aa~~l~~~~G~~~-~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 23 STVGIELFTEQGFDA-TSVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHCTTT-SCHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHcCccc-CCHHHHHHHhCCCcchHhhhCCCHH
Confidence 344455576666533 3467899999999999999999875
No 226
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=20.98 E-value=94 Score=26.09 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=23.4
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhhHHhhHHhhh
Q psy17897 340 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389 (391)
Q Consensus 340 ~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~K~KR~~k~a 389 (391)
+...-.|+.|+||+.+-. +.==.|||.|||++....
T Consensus 16 RiIkiLyQSNPyP~peGT--------------RqaRRNRRRRWR~RQrQI 51 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGT--------------RQARRNRRRRWRERQRQI 51 (115)
T ss_dssp HHHHHHHHSSCCCCCCCC--------------TTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCc--------------hhhhHhHHHHHHHHHHHH
Confidence 345556889999986411 111268999999877653
No 227
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=20.70 E-value=26 Score=28.67 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=31.4
Q ss_pred HHHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 339 KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 339 l~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
+......|.+..|-. .....||++.|+++..+..+|.|+..
T Consensus 15 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~ 55 (195)
T 3ppb_A 15 LETALQLFVSQGFHG-TSTATIAREAGVATGTLFHHFPSKEQ 55 (195)
T ss_dssp HHHHHHHHHHTCSTT-SCHHHHHHHHTCCHHHHHHHCSSHHH
T ss_pred HHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHH
Confidence 445556677776643 34778999999999999999999764
No 228
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=20.55 E-value=24 Score=29.71 Aligned_cols=40 Identities=18% Similarity=0.288 Sum_probs=30.5
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 340 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 340 ~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
..-...|.+..|-.. ....||++.|+++..|..+|.|+..
T Consensus 24 ~aA~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~ 63 (218)
T 3gzi_A 24 LAARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSKEK 63 (218)
T ss_dssp HHHHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSHHH
T ss_pred HHHHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 344555777776533 4668999999999999999998753
No 229
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=20.34 E-value=21 Score=31.04 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 340 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 340 ~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
..-.+.|.+..|-. .....||+..|+++..|..+|.|+..
T Consensus 23 ~aA~~l~~~~G~~~-~s~~~IA~~agvs~~t~Y~~F~~K~~ 62 (216)
T 2oi8_A 23 DHAWEQIATAGASA-LSLNAIAKRMGMSGPALYRYFDGRDE 62 (216)
T ss_dssp HHHHHHHHHHCTTS-CCHHHHHHHTTCCHHHHHTTCSSHHH
T ss_pred HHHHHHHHhcCccc-CCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 34445576666532 34678999999999999999998754
No 230
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=20.14 E-value=16 Score=31.17 Aligned_cols=39 Identities=15% Similarity=0.254 Sum_probs=30.4
Q ss_pred HHHHHHhhcCCCCCHHHHHHHHHHhCCCCCccccccchhhh
Q psy17897 340 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380 (391)
Q Consensus 340 ~~LE~~F~~n~yPS~~er~~LA~qLgLs~~qVrvWFqNRR~ 380 (391)
..-...|.+.. .......||+..|+++..|..+|.|+..
T Consensus 27 ~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~ 65 (215)
T 2hku_A 27 TAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKER 65 (215)
T ss_dssp HHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHH
T ss_pred HHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHH
Confidence 34445566665 5566889999999999999999998754
Done!