RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17897
(391 letters)
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 208 bits (530), Expect = 8e-67
Identities = 71/162 (43%), Positives = 99/162 (61%), Gaps = 8/162 (4%)
Query: 229 DTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSH 288
+ +D ELE FA+ FKQRRIKLG TQ DVG A+ L SQ+TI RFE+L LS
Sbjct: 1 EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGN---DFSQTTISRFEALNLSF 57
Query: 289 NNMIALKPILQAWLEEAEAQAKNKRR-----DPDAPSVLPAGEKKRKRTSIAAPEKRSLE 343
NM LKP+L+ WL +AEA + ++P + +++KRTSI + +LE
Sbjct: 58 KNMSKLKPLLEKWLNDAEANLSSDSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALE 117
Query: 344 AYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
F +P+ E I IAE+L+++K V+RVWF N+RQK+KR+
Sbjct: 118 KSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 199 bits (506), Expect = 3e-63
Identities = 82/167 (49%), Positives = 105/167 (62%), Gaps = 7/167 (4%)
Query: 224 GLQHPDTDT-DPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFE 282
G +H D D +LE FA++FKQRRIKLG TQADVG AL L SQ+TICRFE
Sbjct: 1 GGEHSDEDAPSSDDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGN---VFSQTTICRFE 57
Query: 283 SLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSL 342
+L LS NM LKP+L WLEE ++ + + G K++KRTSI K +L
Sbjct: 58 ALQLSFKNMCKLKPLLNKWLEETDSSSGSPTNLDKIA---AQGRKRKKRTSIEVGVKGAL 114
Query: 343 EAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAA 389
E++F P+PS +I +A+ L L+K VVRVWFCN+RQK+KRM AA
Sbjct: 115 ESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTPAA 161
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 194 bits (495), Expect = 9e-62
Identities = 72/152 (47%), Positives = 95/152 (62%), Gaps = 8/152 (5%)
Query: 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIAL 294
R LE FA FK RRIKLG TQ +VG+ALA + SQ+TICRFE+L LS N L
Sbjct: 3 RALEQFANEFKVRRIKLGYTQTNVGEALAAVHGS---EFSQTTICRFENLQLSFKNACKL 59
Query: 295 KPILQAWLEEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSG 354
K IL WLEEAE A K+++RT+I+ K +LE +F +PS
Sbjct: 60 KAILSKWLEEAEQVGALYNEKVGAN-----ERKRKRRTTISIAAKDALERHFGEHSKPSS 114
Query: 355 EKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386
++I +AE+L+L+K VVRVWFCN+RQ++KR+K
Sbjct: 115 QEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 146
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 185 bits (471), Expect = 4e-58
Identities = 72/157 (45%), Positives = 92/157 (58%), Gaps = 6/157 (3%)
Query: 229 DTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSH 288
D +ELE FA+ KQ+RI LG TQADVG L L SQ+TI RFE+L LS
Sbjct: 4 DMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFGK---VFSQTTISRFEALQLSL 60
Query: 289 NNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAV 348
NM L+P+L+ W+EEA+ + V +KRKRTSI + SLE F
Sbjct: 61 KNMSKLRPLLEKWVEEADNNENLQEISKSETLVQA---RKRKRTSIENRVRWSLETMFLK 117
Query: 349 QPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
P+PS ++I IA +L L+K+VVRVWF N+RQK KR
Sbjct: 118 SPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 185 bits (470), Expect = 6e-58
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 3/152 (1%)
Query: 233 DPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMI 292
+ E+ FA+ FK RR+ LG+TQ VG+A+ + P SQS I RFE L ++ +
Sbjct: 2 NMEEIREFAKNFKIRRLSLGLTQTQVGQAMTATEGPAY---SQSAISRFEKLDITPKSAQ 58
Query: 293 ALKPILQAWLEEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRP 352
LKP+L+ WL EAE + + +++ +K+++RTS +L AYF P P
Sbjct: 59 KLKPVLEKWLNEAELRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLP 118
Query: 353 SGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+G++I +A++L+ + VVRVWF N+RQ K
Sbjct: 119 TGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 84.3 bits (209), Expect = 8e-21
Identities = 21/65 (32%), Positives = 34/65 (52%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
KR RT I + R L YF + PS E+I +A+K L + V++ WF N K+++
Sbjct: 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQ 64
Query: 385 MKFAA 389
++
Sbjct: 65 SGPSS 69
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 78.0 bits (191), Expect = 2e-17
Identities = 32/170 (18%), Positives = 61/170 (35%), Gaps = 20/170 (11%)
Query: 231 DTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNN 290
+ + +E+ A+R + + QA + + SQ T+ +
Sbjct: 3 EINTKEV---AQRITTELKRYSIPQAIFAQRVLCR--------SQGTLSDLLRNPKPWSK 51
Query: 291 MIALKPI---LQAWLEEAEAQAKNKRRDPDAPSVLPAG------EKKRKRTSIAAPEKRS 341
+ + + + WL+E E Q + R K+ R ++R+
Sbjct: 52 LKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRT 111
Query: 342 LEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFAAQH 391
L A F RPS E I+++L L+ + V +F N R++ H
Sbjct: 112 LHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWLEHHH 161
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 73.7 bits (181), Expect = 6e-17
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 324 AGEKKRKRTSIAAPEKRSLEAYFA-VQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQ 382
R RT I+ L+++ V P E I ++ +LDL K+ + +F NQR
Sbjct: 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHV 63
Query: 383 KR 384
K
Sbjct: 64 KH 65
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 65.8 bits (160), Expect = 4e-14
Identities = 15/49 (30%), Positives = 31/49 (63%)
Query: 340 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKFA 388
L+AY+A+ +PS E+++ IA+ ++L +VV+ WF + Q ++ +
Sbjct: 16 SLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQSS 64
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 80
Score = 62.1 bits (151), Expect = 1e-12
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 315 DPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVW 374
KR RT+I + L + + P+ + + IA ++ LKK VV+VW
Sbjct: 5 SSGGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVW 64
Query: 375 FCNQRQKQKRMK 386
F N R ++++
Sbjct: 65 FQNTRARERKSG 76
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein,
homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP:
a.4.1.1
Length = 66
Score = 59.7 bits (145), Expect = 6e-12
Identities = 19/64 (29%), Positives = 28/64 (43%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386
R RT + + +L +A PRP + E L V+RVWF N+R K K+
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62
Query: 387 FAAQ 390
+
Sbjct: 63 IMMK 66
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 56.2 bits (136), Expect = 1e-10
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+ RT + R L+ +F P ++ ++ L+L V+ VWF N RQK ++
Sbjct: 7 GRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARK 64
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 56.3 bits (136), Expect = 1e-10
Identities = 10/64 (15%), Positives = 24/64 (37%)
Query: 323 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQ 382
+ + + + +L+ F P ++ + + L VR WF ++R
Sbjct: 4 GSSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHC 63
Query: 383 KRMK 386
+ +K
Sbjct: 64 RNLK 67
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 52.9 bits (127), Expect = 1e-09
Identities = 10/60 (16%), Positives = 22/60 (36%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+ L+A F P ++ + E L ++ ++ WF + R + +R
Sbjct: 2 AHHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 53.0 bits (127), Expect = 2e-09
Identities = 15/63 (23%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 324 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383
+G K K + + R+LE+ FA P P E++ + + + + + WF +R+K
Sbjct: 6 SGPTKYKERA--PEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVN 63
Query: 384 RMK 386
+
Sbjct: 64 AEE 66
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 52.8 bits (127), Expect = 2e-09
Identities = 22/64 (34%), Positives = 36/64 (56%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386
KR RTS + R++++YFA+ P + + +A+K L K V++VWF N R K +R
Sbjct: 7 GKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNL 66
Query: 387 FAAQ 390
+
Sbjct: 67 LRQE 70
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 51.9 bits (124), Expect = 6e-09
Identities = 11/65 (16%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 327 KKRKRTSIAAPEK-RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
+K K + E+ R L+A F + E++ + + L + + WF +++ +
Sbjct: 13 QKFKEKT---AEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALK 69
Query: 386 KFAAQ 390
+ +
Sbjct: 70 EEKME 74
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB:
1f43_A 1yrn_A*
Length = 61
Score = 49.5 bits (119), Expect = 2e-08
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383
+ + ++SI+ + LE F + + ++ +A+K + VRVWF N+R + K
Sbjct: 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 50.0 bits (119), Expect = 3e-08
Identities = 11/61 (18%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 327 KKRKRTSIAAPEK-RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
+K K + + + LE F P+ ++ + + L + + WF +R+ + M
Sbjct: 15 QKFKEKT---QGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71
Query: 386 K 386
+
Sbjct: 72 E 72
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 49.4 bits (118), Expect = 3e-08
Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 318 APSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPR-PSGEKIAAIAEKLDLKKNVVRVWFC 376
S G K +LE F + P +++ ++++LD ++ WF
Sbjct: 1 GSSGSSGGIKDSPVNK--VEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFR 58
Query: 377 NQRQKQK 383
++R + K
Sbjct: 59 HRRNQDK 65
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 51.8 bits (123), Expect = 4e-08
Identities = 23/177 (12%), Positives = 51/177 (28%), Gaps = 42/177 (23%)
Query: 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRF---------ESLTLSH 288
A+ K + + Q +V L+QS + + + +
Sbjct: 29 WRVAKMVKSYLQQHNIPQREVVDTTG---------LNQSHLSQHLNKGTPMKTQKRAALY 79
Query: 289 NNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAV 348
+ + + A + D P + +R R ++ L +
Sbjct: 80 TWYVRKQREVAQQFTHAGQGGLIEEPTGDEL---PTKKGRRNRFKWGPASQQILFQAYER 136
Query: 349 QPRPSGEKIAAIAEKLDLKKNV---------------------VRVWFCNQRQKQKR 384
Q PS E+ + E+ + + + V WF N+R+++
Sbjct: 137 QKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 47.3 bits (111), Expect = 2e-07
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYF----AVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQ 380
+ RT + + +L+ Y+ EKI A+A +L++ +VR W N+R+
Sbjct: 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRR 65
Query: 381 KQKRMK 386
K + M
Sbjct: 66 KYRLMG 71
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein, transcription
regulation, NUC homeobox; 2.6A {Mus musculus}
Length = 62
Score = 45.4 bits (108), Expect = 6e-07
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
G K++ RT + + +L+ F Q S +++ ++ L+L V+ WF NQR K KR
Sbjct: 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKR 60
Query: 385 MK 386
+
Sbjct: 61 WQ 62
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 44.0 bits (103), Expect = 3e-06
Identities = 11/47 (23%), Positives = 24/47 (51%)
Query: 340 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386
L+AY+A+ P+ +++ I+ + L + V+ WF ++ Q
Sbjct: 18 SVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQYSNS 64
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 44.0 bits (104), Expect = 3e-06
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPR-PSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+ + + LE F + P + IA + L + + WF + + +R
Sbjct: 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRR 60
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434}
SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A
2r63_A 1sq8_A
Length = 69
Score = 43.4 bits (103), Expect = 3e-06
Identities = 17/78 (21%), Positives = 34/78 (43%), Gaps = 17/78 (21%)
Query: 239 AFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES-LTLSHNNMIALKPI 297
+ + R K +RI+LG+ QA++ + + G +Q +I + E+ T + L
Sbjct: 1 SISSRVKSKRIQLGLNQAELAQKV------GT---TQQSIEQLENGKTKRPRFLPELASA 51
Query: 298 LQ---AWL----EEAEAQ 308
L WL ++ +
Sbjct: 52 LGVSVDWLLNGTSDSNVR 69
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for eukaryotic
structural genomics; NMR {Homo sapiens}
Length = 84
Score = 43.6 bits (103), Expect = 4e-06
Identities = 18/74 (24%), Positives = 32/74 (43%)
Query: 313 RRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 372
+K++ RT ++ + L F Q S +++ ++ L+L V+
Sbjct: 8 ENSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVK 67
Query: 373 VWFCNQRQKQKRMK 386
WF NQR K KR +
Sbjct: 68 TWFQNQRMKSKRWQ 81
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 4e-06
Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 39/184 (21%)
Query: 197 HHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAER-FKQRRIKLGVTQ 255
HHHHHH + + ++ + D ++++ + + I +
Sbjct: 1 HHHHHHMDFETGEHQYQ---YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMS 57
Query: 256 ADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIA--LKPILQA---WLEEAEAQAK 310
D L F +L M+ ++ +L+ +L K
Sbjct: 58 KDAVSGTLRL---------------FWTLLSKQEEMVQKFVEEVLRINYKFLMSP---IK 99
Query: 311 NKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL-DLK-- 367
++R P + + ++ R K ++ R + + + L +L+
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-------SRL--QPYLKLRQALLELRPA 150
Query: 368 KNVV 371
KNV+
Sbjct: 151 KNVL 154
Score = 34.8 bits (79), Expect = 0.057
Identities = 46/297 (15%), Positives = 76/297 (25%), Gaps = 69/297 (23%)
Query: 118 HHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMSDPTPNP 177
HHHHHH H + L +F D ++ D S ++ + +
Sbjct: 1 HHHHHHMDFET-GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEIDHIIMSK 58
Query: 178 HQLHSSSM-------YGPSMNSMMTGHHHHHHHSGALPASHHHGATHHPVMPPGL---QH 227
+ + M ++ S P M + Q
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 228 PDTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLK---------LPGVG--ALSQS 276
D + FA+ R + +AL L+ + G G ++
Sbjct: 117 DRLYNDN---QVFAKYNVSRLQPYLKLR----QALLELRPAKNVLIDGVLGSGKTWVALD 169
Query: 277 TICRFESLTLSHNNMIALKPILQAWL-----EEAEA-----QAKNKRRDPDAPSVLPAGE 326
C + + I WL E Q + DP+ S
Sbjct: 170 V-CLSYKVQCKMDFKI-------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNV--VRVW--F---C 376
+ R E R L +P + + L NV + W F C
Sbjct: 222 NIKLRIHSIQAELRRL---LKSKPYENCLLV------LL---NVQNAKAWNAFNLSC 266
Score = 28.3 bits (62), Expect = 5.2
Identities = 35/218 (16%), Positives = 60/218 (27%), Gaps = 52/218 (23%)
Query: 139 SLLLFPQMSHHGMDGLEML------DSISSSMTTLTPMS----DPTPNPHQLHSSSM-YG 187
L +FP +H L ++ + + L S P + + S +
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436
Query: 188 PSMNSMMTGH-----------HHHHHHSGALPAS----HHHGATHHPVMPPGLQHPDTDT 232
+ + H H G HH +
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG--HH--LKNIEHPERMTL 492
Query: 233 DPRELEAFAERFKQRRIKLGVT----QADVGKALANLKL------PGVGALSQ--STICR 280
F RF +++I+ T + L LK + + I
Sbjct: 493 FRMVFLDF--RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 281 F-----ESLTLS-HNNM--IALKPILQAWLEEAEAQAK 310
F E+L S + ++ IAL +A EEA Q +
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 44.0 bits (103), Expect = 5e-06
Identities = 13/82 (15%), Positives = 25/82 (30%)
Query: 305 AEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL 364
+ + P K + L++ F PS E+ +A++
Sbjct: 3 HHHHHHSSGLEVLFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKES 62
Query: 365 DLKKNVVRVWFCNQRQKQKRMK 386
L + + WF + R K
Sbjct: 63 GLARTDIVSWFGDTRYAWKNGN 84
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Homo sapiens}
Length = 69
Score = 42.7 bits (101), Expect = 5e-06
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
G + ++ + LE F+ Q S + A +A+ L L + V++WF N+R K KR
Sbjct: 2 GHHHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61
Query: 385 MKFAAQ 390
+ +++
Sbjct: 62 KQLSSE 67
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription
regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A
3cro_L*
Length = 71
Score = 41.9 bits (99), Expect = 1e-05
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 237 LEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES-LTLSHNNMIALK 295
++ +ER K+RRI L +TQ ++ GV Q +I E+ +T + +
Sbjct: 1 MQTLSERLKKRRIALKMTQTELATKA------GV---KQQSIQLIEAGVTKRPRFLFEIA 51
Query: 296 PILQ---AWLEEAEAQAK 310
L WL+ + K
Sbjct: 52 MALNCDPVWLQYGTKRGK 69
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor,
structural genomics, loop insertion, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 95
Score = 42.7 bits (100), Expect = 1e-05
Identities = 16/84 (19%), Positives = 24/84 (28%), Gaps = 15/84 (17%)
Query: 323 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNV------------ 370
+ R + +E+YF P K IA +
Sbjct: 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVT 62
Query: 371 ---VRVWFCNQRQKQKRMKFAAQH 391
V WF N+R++ KR A
Sbjct: 63 SLKVYNWFANRRKEIKRRANIAAI 86
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA
binding helix- turn-helix motif, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 80
Score = 41.3 bits (97), Expect = 2e-05
Identities = 19/58 (32%), Positives = 32/58 (55%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+R+RT+ + LEA FA P +A K++L ++ V+VWF N+R K ++
Sbjct: 7 GRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQ 64
>4ghj_A Probable transcriptional regulator; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE; 1.75A {Vibrio vulnificus}
Length = 101
Score = 41.9 bits (98), Expect = 3e-05
Identities = 24/102 (23%), Positives = 40/102 (39%), Gaps = 17/102 (16%)
Query: 197 HHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRRIKLGVTQA 256
HHHHHH SG + + + T E +R KQ R+ +TQ+
Sbjct: 2 HHHHHHSSGVDLGTEN--------LYFQSNAMKHVTAAALAEEIGDRLKQARLNRDLTQS 53
Query: 257 DVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPIL 298
+V + G+ ++ T+ E + + MIA+ L
Sbjct: 54 EVAEIA------GI---ARKTVLNAEKGKVQLDIMIAILMAL 86
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 41.4 bits (97), Expect = 3e-05
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 312 KRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVV 371
RR ++K+ RTS + LE F Q + + AA+A L + V
Sbjct: 2 ARRIGHPYQNRTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQV 61
Query: 372 RVWFCNQRQKQKRMK 386
+ WF N+R K +R
Sbjct: 62 KTWFQNRRTKWRRQT 76
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 39.9 bits (94), Expect = 4e-05
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
++ RT + +LE F + S + A + L L + V++WF N+R K KR+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 40.0 bits (94), Expect = 5e-05
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386
++++R + + LE F Q S + +A + L V++WF N R K KR
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 64
Score = 39.8 bits (93), Expect = 6e-05
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 4/60 (6%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQ-PRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383
G T A LE F P +++ ++++LD ++ WF +R ++K
Sbjct: 1 GSSGSSGT---AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 57
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 7e-05
Identities = 38/210 (18%), Positives = 61/210 (29%), Gaps = 68/210 (32%)
Query: 197 HHHHHHHSGALPASHHHGAT--------HHPVMPPGLQHPDTDTDPRELEAFAERFKQRR 248
H H +P + A+ P G D T P EL +F
Sbjct: 12 SHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG---KF---- 64
Query: 249 IKLG-----VTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNN------------- 290
LG V + VG+ L L + FE+ L N+
Sbjct: 65 --LGYVSSLVEPSKVGQFDQVLNL---------CLTEFENCYLEGNDIHALAAKLLQEND 113
Query: 291 --MIALKPILQAWLEEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAA------------ 336
++ K +++ ++ A AK ++ A + + + A
Sbjct: 114 TTLVKTKELIKNYI-TARIMAKRPFDKKSNSALFRAVGEGNAQ--LVAIFGGQGNTDDYF 170
Query: 337 PEKRSL-EAYFAVQPRPS-GEKIAAIAEKL 364
E R L + Y G+ I AE L
Sbjct: 171 EELRDLYQTY-----HVLVGDLIKFSAETL 195
Score = 34.3 bits (78), Expect = 0.079
Identities = 36/214 (16%), Positives = 69/214 (32%), Gaps = 64/214 (29%)
Query: 134 HVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPM---SDPTP----------NPH-- 178
+ A P+ L P + + DS+ ++ +PM S+ T N H
Sbjct: 311 YEAYPNTSLPPSI---------LEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 179 ---QLHSSSMYGPSMNSMMTGHHHHHHHSGALPASHHHGATH-HPVM-PPGL-QH--PDT 230
Q+ S + G N +++G P S + P GL Q P +
Sbjct: 362 AGKQVEISLVNGAK-NLVVSGP----------PQSLYGLNLTLRKAKAPSGLDQSRIPFS 410
Query: 231 DTDPRELEAFAERF--------------KQRRIKLGVTQADVGKALANLKLPGVGALSQS 276
+ + F+ RF I + + +V ++++P S
Sbjct: 411 ERKLK----FSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGS 466
Query: 277 TICRF-ESLTLSHNNMIALKPILQAWLEEAEAQA 309
+ S++ + I P+ W + +A
Sbjct: 467 DLRVLSGSISERIVDCIIRLPVK--WETTTQFKA 498
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 39.7 bits (93), Expect = 8e-05
Identities = 15/64 (23%), Positives = 30/64 (46%)
Query: 323 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQ 382
++ RT ++ + +L+ F + + A +A L L + V++WF N+R K
Sbjct: 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKI 62
Query: 383 KRMK 386
K+
Sbjct: 63 KKSG 66
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 39.7 bits (93), Expect = 1e-04
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 323 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQ 382
+K+++R + LE F Q S + +A + L V++WF N R K
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKT 64
Query: 383 KRMK 386
KR +
Sbjct: 65 KRAQ 68
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 42.3 bits (98), Expect = 1e-04
Identities = 19/102 (18%), Positives = 36/102 (35%), Gaps = 21/102 (20%)
Query: 304 EAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEK 363
E Q+ + DA S + +R R ++ L + Q PS E+ A+ E+
Sbjct: 119 EFSQQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEE 178
Query: 364 LDLKKNV---------------------VRVWFCNQRQKQKR 384
+ + + V WF N+R+++
Sbjct: 179 CNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEEAF 220
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 76
Score = 39.6 bits (92), Expect = 1e-04
Identities = 9/60 (15%), Positives = 18/60 (30%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
G + L+++F E + + L + + WF + R K
Sbjct: 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 38.8 bits (91), Expect = 1e-04
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383
+++ R + + LE F Q S + +A L L V++WF N+R K K
Sbjct: 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 38.8 bits (91), Expect = 1e-04
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
G ++R+RT + + + LEA F P IA +L + VRVWF N+R K ++
Sbjct: 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRK 60
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 39.0 bits (91), Expect = 1e-04
Identities = 19/72 (26%), Positives = 28/72 (38%)
Query: 315 DPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVW 374
A + +R RT + LE F Q S +AE L L + V+ W
Sbjct: 5 SSGGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTW 64
Query: 375 FCNQRQKQKRMK 386
+ N+R K K+
Sbjct: 65 YQNRRMKWKKSG 76
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 38.2 bits (89), Expect = 3e-04
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 323 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQ 382
K + + + LE F Q S + +A+ L L + V+ WF N+R K
Sbjct: 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKW 62
Query: 383 KR 384
+R
Sbjct: 63 RR 64
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant,
DNA binding protein, developmental protein, disease
mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 38.1 bits (89), Expect = 3e-04
Identities = 20/63 (31%), Positives = 35/63 (55%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMKF 387
+R RT+ + LE F V P + + +A+KL+L+ + +++WF N+R K KR
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61
Query: 388 AAQ 390
+Q
Sbjct: 62 ESQ 64
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB:
2ld5_A*
Length = 73
Score = 37.9 bits (88), Expect = 3e-04
Identities = 16/61 (26%), Positives = 31/61 (50%)
Query: 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
E ++KR + + LE +A + +K I+ +L + V +WF N+R K+K++
Sbjct: 6 EGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65
Query: 386 K 386
Sbjct: 66 I 66
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A
{Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 38.7 bits (89), Expect = 4e-04
Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 21/89 (23%)
Query: 323 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLD----------------- 365
P + +R R ++ L + Q PS E+ + E+ +
Sbjct: 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGL 64
Query: 366 ----LKKNVVRVWFCNQRQKQKRMKFAAQ 390
+ + V WF N+R+++ A
Sbjct: 65 GSNLVTEVRVYNWFANRRKEEAFRHKLAM 93
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 37.3 bits (87), Expect = 4e-04
Identities = 18/59 (30%), Positives = 32/59 (54%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386
+R RT+ + LE F + S + +A +L+L ++ ++VWF N+R K KR +
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQR 60
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 70
Score = 37.5 bits (87), Expect = 4e-04
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 323 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQ 382
++KR + + R LE +A + +K I+ L + + +WF N+R K+
Sbjct: 3 SGSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKE 62
Query: 383 KRMK 386
K+
Sbjct: 63 KKSG 66
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein,
xenobiotic response E family of transcriptional
regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae
PV}
Length = 83
Score = 37.4 bits (87), Expect = 7e-04
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 9/48 (18%)
Query: 236 ELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283
+A + + R G+TQ ++ L QS + + E+
Sbjct: 11 RYQALLDLLLEARSAAGITQKELAARL---------GRPQSFVSKTEN 49
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex,
HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 36.8 bits (85), Expect = 0.001
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Query: 315 DPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVW 374
+P A L A ++KR + LE F + ++ +A L+L + V++W
Sbjct: 2 NPAANW-LHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIW 60
Query: 375 FCNQRQKQKRMK 386
F N+R K K++
Sbjct: 61 FQNRRMKMKKIN 72
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 39.8 bits (92), Expect = 0.001
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 10/48 (20%)
Query: 236 ELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283
+ E K+ R+ G+TQ + + QS + R ES
Sbjct: 2 QAEKLGSEIKKIRVLRGLTQKQLSE----------NICHQSEVSRIES 39
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix,
helix-turn-helix; NMR {Drosophila melanogaster} SCOP:
a.4.1.1
Length = 68
Score = 36.2 bits (84), Expect = 0.001
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 328 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+R RT+ + + LE +F + ++A ++ KL L V++WF N+R++ K
Sbjct: 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKI 59
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 35.8 bits (83), Expect = 0.002
Identities = 18/58 (31%), Positives = 27/58 (46%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+R RT + +LE F P +A K+ L++ V VWF N+R K +R
Sbjct: 7 GRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRR 64
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 35.4 bits (82), Expect = 0.002
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 342 LEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
LE F Q + + AA+A+ L + V+ WF N+R K +R
Sbjct: 12 LERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 35.8 bits (83), Expect = 0.002
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 303 EEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRP---SGEKIAA 359
E+E KR+ ++R RT+ +A + LE F P + E++A
Sbjct: 6 CESEPGIALKRK------------QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQ 53
Query: 360 IAEKLDLKKNVVRVWFCNQRQKQKR 384
+ +L + ++VWF N+R + ++
Sbjct: 54 ---RTNLTEARIQVWFQNRRARLRK 75
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA
binding protein, transcription regulator; HET: CME;
1.95A {Enterobacteria phage P2}
Length = 84
Score = 35.5 bits (82), Expect = 0.003
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 9/49 (18%)
Query: 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283
+ + R + ++Q+++ L LSQS I + ES
Sbjct: 6 HRYRCLVQLLTKLRKEASLSQSELAIFL---------GLSQSDISKIES 45
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain,
transcription; 2.25A {Enterococcus faecalis} SCOP:
a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A
2grl_A 2grm_A
Length = 317
Score = 38.1 bits (88), Expect = 0.003
Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 12/55 (21%)
Query: 242 ERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES--LTLSHNNMIAL 294
KQ R +L Q D+ G +S+S + E+ +S +
Sbjct: 6 SVLKQIRQELNYHQIDLYS----------GIMSKSVYIKVEADSRPISVEELSKF 50
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix,
DNA-binding, transcription, transcription regulation;
1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB:
3jxb_C 3jxc_L 3jxd_L
Length = 68
Score = 34.8 bits (81), Expect = 0.003
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283
ER + RR KL + QA +GK + GV S I ++E
Sbjct: 6 MGERIRARRKKLKIRQAALGKMV------GV---SNVAISQWER 40
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 34.6 bits (80), Expect = 0.003
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 326 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
+KR RT+ ++ + L+ F + + ++ +L L + +++WF N+R K K+
Sbjct: 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria
phage P22} SCOP: a.35.1.2
Length = 76
Score = 35.3 bits (82), Expect = 0.003
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 9/44 (20%)
Query: 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283
ER + RR KL + QA +GK + GV S I ++E
Sbjct: 6 MGERIRARRKKLKIRQAALGKMV------GV---SNVAISQWER 40
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 35.2 bits (81), Expect = 0.004
Identities = 23/73 (31%), Positives = 34/73 (46%)
Query: 312 KRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVV 371
KR +V GE KR+RTS + LE F + + IA L L + +
Sbjct: 13 KRVHLGTSTVNANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQI 72
Query: 372 RVWFCNQRQKQKR 384
++WF N+R K K+
Sbjct: 73 KIWFQNRRMKWKK 85
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA
complex, transcription/DNA complex; 2.42A {Mesocricetus
auratus}
Length = 63
Score = 34.3 bits (79), Expect = 0.005
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKR 384
G KR RT+ + LE F S + +A L+L + +++WF N+R K K+
Sbjct: 1 GSNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure
initiative, MI center for structural genomics, MCSG,
transcription regulat; HET: MSE; 1.90A {Listeria
innocua}
Length = 114
Score = 35.5 bits (82), Expect = 0.006
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 9/44 (20%)
Query: 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283
FAE + + + G+ + + L V T+ + S
Sbjct: 10 FAENLSRLKKEHGLKNHQIAELL------NV---QTRTVAYYMS 44
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein
structure initiative, midwest center for structural
genomic binding; 1.80A {Silicibacter pomeroyi}
Length = 86
Score = 34.8 bits (80), Expect = 0.006
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 235 RELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283
E +R +Q R+ G+TQAD+ + L QS + + E+
Sbjct: 10 PEHVYLCQRLRQARLDAGLTQADLAERL---------DKPQSFVAKVET 49
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing
system, phosphoryltransferase, HEL helix motif,
transcription regulator; 3.20A {Streptococcus
pneumoniae}
Length = 158
Score = 35.7 bits (82), Expect = 0.009
Identities = 8/44 (18%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283
+ K R +TQ + + + G+ S++++ R+E+
Sbjct: 2 IGKNIKSLRKTHDLTQLEFARIV------GI---SRNSLSRYEN 36
>3l87_A Peptide deformylase; hydrolase, iron, metal-binding, PR
biosynthesis; 2.00A {Streptococcus mutans}
Length = 238
Score = 36.6 bits (85), Expect = 0.009
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMSDP 173
M + HHHHHH SG +P H + QM M ++ + S + + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTG---GQQMGRGSMSAIKTITKASHLIDMNDIIREG 57
Query: 174 TP 175
P
Sbjct: 58 HP 59
Score = 30.1 bits (68), Expect = 1.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATH 217
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMT 25
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 34.5 bits (79), Expect = 0.010
Identities = 21/77 (27%), Positives = 31/77 (40%)
Query: 308 QAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLK 367
+ K S G RT+ + LE F S + IA L+L
Sbjct: 15 KVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELN 74
Query: 368 KNVVRVWFCNQRQKQKR 384
+ V++WF N+R KQK+
Sbjct: 75 ETQVKIWFQNRRMKQKK 91
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 36.6 bits (84), Expect = 0.011
Identities = 27/132 (20%), Positives = 41/132 (31%), Gaps = 18/132 (13%)
Query: 115 MTGHHHHH------------HHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISS 162
M HHHHH + S P +A PSL L S
Sbjct: 1 MAHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQL------HS 54
Query: 163 SMTTLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHHHSGALPASHHHGATHHPVMP 222
++TL+ + P + SS M SM+ T S L + + ++ + P
Sbjct: 55 PISTLSSPINGMGPPFSVISSPMGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKP 114
Query: 223 PGLQHPDTDTDP 234
P +
Sbjct: 115 PLGLNGVLKVPA 126
Score = 30.8 bits (69), Expect = 0.87
Identities = 21/138 (15%), Positives = 37/138 (26%), Gaps = 3/138 (2%)
Query: 64 PHQMSHHGMDGLEMLDSI-SSSMTTLTPMSDP-TPNPHQLHSSSMYGPSMNSMMTGHHHH 121
H HH D +M + +SS+T+ T P+ H + P
Sbjct: 2 AHHHHHHVDDDDKMFSTQVNSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSS 61
Query: 122 HHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMSDPTPNPHQLH 181
+ P S + + +SS M ++ D P
Sbjct: 62 PINGMGPPFSVISSP-MGPHSMSVPTTPTLGFSTGSPQLSSPMNPVSSSEDIKPPLGLNG 120
Query: 182 SSSMYGPSMNSMMTGHHH 199
+ +M + H
Sbjct: 121 VLKVPAHPSGNMASFTKH 138
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 33.5 bits (77), Expect = 0.013
Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRP---SGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383
+R RTS + +LE F P + E++AA K+DL + ++VWF N+R K +
Sbjct: 7 GQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAA---KIDLPEARIQVWFSNRRAKWR 63
Query: 384 R 384
R
Sbjct: 64 R 64
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM
glucanase, carbohydrate metabolism, cellulose
degradation, glycosidase; HET: BTB; 2.10A {Clostridium
cellulovorans}
Length = 515
Score = 36.4 bits (83), Expect = 0.014
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 18/72 (25%)
Query: 52 GMNGTHGGPNGRPHQMSHHGMDGLEMLDSISSSMTTLTPMSDPTPNPHQLHSSSMYGPSM 111
G N + G +P + ++ ++ P PNP +
Sbjct: 462 GFNINYSGVLSKPTGFT---------VNGTECTVKKGELEGKPIPNP---------LLGL 503
Query: 112 NSMMTGHHHHHH 123
+S TGHHHHHH
Sbjct: 504 DSTRTGHHHHHH 515
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A
{Enterobacteria phage lambda}
Length = 236
Score = 35.7 bits (82), Expect = 0.015
Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 14/104 (13%)
Query: 230 TDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LS 287
T + +++++ +LG++Q V +G + QS + + L+
Sbjct: 8 TQEQLEDARRLKAIYEKKKNELGLSQESVADK--------MG-MGQSGVGALFNGINALN 58
Query: 288 HNNMIALKPILQ---AWLEEAEAQAKNKRRDPDAPSVLPAGEKK 328
N L IL+ + A+ + + + E +
Sbjct: 59 AYNAALLAKILKVSVEEFSPSIAREIYEMYEAVSMQPSLRSEYE 102
>3ivp_A Putative transposon-related DNA-binding protein; APC62618,
clostridium diffic structural genomics, PSI-2, protein
structure initiative; HET: PG4; 2.02A {Clostridium
difficile}
Length = 126
Score = 34.4 bits (79), Expect = 0.015
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 9/54 (16%)
Query: 230 TDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283
D + A K+ R K G+T+ VG + + + E+
Sbjct: 3 KKEDKYDFRALGLAIKEARKKQGLTREQVGAMI---------EIDPRYLTNIEN 47
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif,
alternative splicing, nuclear protein, phosphorylation,
repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1
PDB: 2jx2_A
Length = 121
Score = 34.3 bits (79), Expect = 0.015
Identities = 14/40 (35%), Positives = 17/40 (42%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDT 232
M + HHHHHH SG +P H G P + P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGPFRRSDSFPERRAPRKGN 40
Score = 30.9 bits (70), Expect = 0.22
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 114 MMTGHHHHHHHSGALPASHHH 134
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHM 21
Score = 26.6 bits (59), Expect = 6.9
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 115 MTGHHHHHHHSGALPASHHHVA 136
M HHHHHHS L H+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMG 22
>2kss_A Carotenogenesis protein CARS; antirepressor, activator, carotenoid
biosynthesis, transcription, transcription regulation,
transcription REGU; NMR {Myxococcus xanthus}
Length = 106
Score = 33.9 bits (77), Expect = 0.017
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLL 142
M + HHHHHH SG +P H + PSL++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMIQDPSLII 29
Score = 27.8 bits (61), Expect = 2.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
a.4.1.1
Length = 80
Score = 33.4 bits (76), Expect = 0.017
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Query: 315 DPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYF-----AVQPRPSGEKIAAIAEKLDLKKN 369
+ G KR RT A +K + A+ +Q + + +++
Sbjct: 5 SSGSNPSSSGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVA-VEQFCAETGVRRQ 63
Query: 370 VVRVWFCNQRQKQKR 384
V+++W N +
Sbjct: 64 VLKIWMHNNKNSGPS 78
>2vvy_A Protein B15, B14; IKK, IKK beta, BCL-2 family, early protein,
HOST-virus interaction, viral protein, immunomodulator,
NF-KB activation; 2.69A {Vaccinia virus}
Length = 169
Score = 34.7 bits (79), Expect = 0.019
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 114 MMTGHHHHHHHSGALP-ASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMT 165
M + HHHHHH SG +P SH + + PQ H G D L +D + +T
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTANFSTHVFSPQ--HCGCDRLTSIDDVRQCLT 51
Score = 31.7 bits (71), Expect = 0.25
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 193 MMTGHHHHHHHSGALP-ASHHHGATHHPVMPPGLQHPDTDTD 233
M + HHHHHH SG +P SH V P D T
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTANFSTHVFSPQHCGCDRLTS 42
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 35.8 bits (83), Expect = 0.020
Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTD-TDPRELEAFAERFKQRR 248
M + HHHHHH SG +P H + P++P + D E +RF R
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMDSI--PMVPAEVGRAVIDPKSYGTWEPLLDRFDALR 55
Score = 32.7 bits (75), Expect = 0.22
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSL 140
M + HHHHHH SG +P H + P +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMDSIPMV 27
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB:
3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Length = 371
Score = 35.6 bits (82), Expect = 0.023
Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 20/72 (27%)
Query: 196 GHHHHHHHSGALPASHHHGA---------THHPVMPPGLQHPDT-----------DTDPR 235
GHHHHHHH +S H HP++ L DT T
Sbjct: 2 GHHHHHHHHHHHHSSGHIDDDDKHMLEMIQSHPLLAAPLAVGDTIGFFSSSAPATVTAKN 61
Query: 236 ELEAFAERFKQR 247
E +++
Sbjct: 62 RFFRGVEFLQRK 73
Score = 29.8 bits (67), Expect = 1.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 117 GHHHHHHHSGALPASHHHVATPSLLLFPQMSH 148
GHHHHHHH +S H +L SH
Sbjct: 2 GHHHHHHHHHHHHSSGHIDDDDKHMLEMIQSH 33
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein,
helix-turn-H restriction-modification, transcription;
2.00A {Citrobacter SP} PDB: 3lis_A
Length = 98
Score = 33.3 bits (76), Expect = 0.026
Identities = 9/45 (20%), Positives = 20/45 (44%), Gaps = 7/45 (15%)
Query: 240 FAERFKQRRIKLGVTQADVGKALANLKLPGV-GALSQSTICRFES 283
R K R++ G++Q +G G+ A + + + ++E
Sbjct: 2 LIRRLKDARLRAGISQEKLGVLA------GIDEASASARMNQYEK 40
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger,
toprim, walker B ATP binding motif; 2.50A {Deinococcus
radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Length = 228
Score = 34.9 bits (81), Expect = 0.027
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 75 LEMLDS--ISSSMTTLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHH 123
LE D + ++T +S P P G ++ + HHHHHH
Sbjct: 178 LEYTDEVTLGRALTGRQTVSKPQPPQRPGDEDGADGAAVPASRLEHHHHHH 228
Score = 34.9 bits (81), Expect = 0.027
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 154 LEMLDS--ISSSMTTLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHH 202
LE D + ++T +S P P G ++ + HHHHHH
Sbjct: 178 LEYTDEVTLGRALTGRQTVSKPQPPQRPGDEDGADGAAVPASRLEHHHHHH 228
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 32.5 bits (74), Expect = 0.030
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 308 QAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLK 367
QA N P G ++R R + + LE F + + +A L L
Sbjct: 1 QASNHTFYPWMAIAGTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLT 60
Query: 368 KNVVRVWFCNQRQKQKRM 385
+ +++WF N+R K K+
Sbjct: 61 ERQIKIWFQNRRMKLKKE 78
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 32.4 bits (74), Expect = 0.034
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 329 RKRTSIAAPEKRSLEAYFAVQPR-PSGEKIAAIAEKLDLKKNVVRVWFCNQRQK-QKRMK 386
++ + LE F + P + IA + L + + WF + + ++
Sbjct: 3 EGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62
Query: 387 FAAQ 390
++
Sbjct: 63 LPSE 66
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 35.0 bits (81), Expect = 0.036
Identities = 13/53 (24%), Positives = 19/53 (35%)
Query: 194 MTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQ 246
M HHHHHHS L H A+ G + +++F+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFMSQSIKLFSVLSDQFQN 53
Score = 32.7 bits (75), Expect = 0.18
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTG 26
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 31.4 bits (72), Expect = 0.042
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 331 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQR---QKQKRM 385
+ + + LE F+ P +A K+ L + ++VWF N+R +KQ+++
Sbjct: 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEKV 60
>3ozf_A Hypoxanthine-guanine-xanthine phosphoribosyltrans;
transferase-transferase inhibitor complex; HET: HPA;
1.94A {Plasmodium falciparum fcr-3} PDB: 3ozg_A* 1cjb_A*
Length = 250
Score = 34.2 bits (79), Expect = 0.044
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 194 MTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHP--DTDTDPRELEAF 240
M G HHHHHH G +P H ++P P D D +L++F
Sbjct: 1 MGGSHHHHHHGGLVPRGSHMPIPNNPGAGENAFDPVFVNDDDGYDLDSF 49
Score = 31.9 bits (73), Expect = 0.32
Identities = 11/20 (55%), Positives = 12/20 (60%)
Query: 115 MTGHHHHHHHSGALPASHHH 134
M G HHHHHH G +P H
Sbjct: 1 MGGSHHHHHHGGLVPRGSHM 20
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc,
fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP:
a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A
1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Length = 198
Score = 34.1 bits (78), Expect = 0.046
Identities = 18/139 (12%), Positives = 32/139 (23%), Gaps = 23/139 (16%)
Query: 232 TDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNM 291
FAE K RR ++ + A + L + T+ +E+ +
Sbjct: 3 NTKTASTGFAELLKDRREQVKMDHAALASLL---------GETPETVAAWENGEGGELTL 53
Query: 292 IALKPILQAW---------LEEAEAQAKNKRRDPDAPSVLPAGEKKRKR---TSIAAP-E 338
L I + + PD +L +
Sbjct: 54 TQLGRIAHVLGTSIGALTPPAGNDLDDGVIIQMPDERPILKGVRDNVDYYVYNCLVRTKR 113
Query: 339 KRSLEAYFA-VQPRPSGEK 356
SL V +
Sbjct: 114 APSLVPLVVDVLTDNPDDA 132
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix,
restriction- modification, transcription regulator;
2.80A {Enterobacter SP} PDB: 3fya_A
Length = 99
Score = 32.4 bits (74), Expect = 0.048
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 19/63 (30%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRRIKLG 252
M + HHHHHH SG +P H M L L + K+ R++ G
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH--------MESFL-----------LSKVSFVIKKIRLEKG 41
Query: 253 VTQ 255
+TQ
Sbjct: 42 MTQ 44
>3b3e_A YVGN protein; aldo-keto reductase, oxidoreductase; 1.80A {Bacillus
subtilis} PDB: 3b3d_A
Length = 310
Score = 34.5 bits (80), Expect = 0.052
Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 8/52 (15%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMT 165
M + HHHHHH SG +P H + M M S+ ++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH--------MASMTGGQQMGRGSMPTSLKDTVK 44
Score = 31.4 bits (72), Expect = 0.39
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.9 bits (63), Expect = 6.3
Identities = 13/42 (30%), Positives = 14/42 (33%)
Query: 194 MTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPR 235
M HHHHHHS L H A+ G T
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMPTSLKDT 42
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 31.6 bits (72), Expect = 0.052
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 327 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRMK 386
+KR R + + LE F + + IA L L + +++WF N+R K K+
Sbjct: 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61
>3ajv_A Putative uncharacterized protein; ENDA, archaea crenarch hydrolase;
1.70A {Aeropyrum pernix} PDB: 3p1z_A
Length = 190
Score = 33.5 bits (76), Expect = 0.067
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 193 MMTGHHHHHHHSGALPASHHHG 214
M + HHHHHH SG +P H G
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMG 22
Score = 32.7 bits (74), Expect = 0.11
Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 114 MMTGHHHHHHHSGALP-ASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSM 164
M + HHHHHH SG +P SH + + G++G+ + + S
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGKGEGEVAGCKAAARLGVEGVFVEECFDGSY 52
>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET:
3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A
Length = 413
Score = 34.2 bits (78), Expect = 0.075
Identities = 17/65 (26%), Positives = 20/65 (30%), Gaps = 13/65 (20%)
Query: 193 MMTGHHHHHHHSGALPASHHHGAT--------HHPVMPP-----GLQHPDTDTDPRELEA 239
M + HHHHHH SG +P H G G +P D
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGGVDFEGFRKLQRADGFASILAIGTANPPNAVDQSTYPD 60
Query: 240 FAERF 244
F R
Sbjct: 61 FYFRI 65
Score = 30.3 bits (68), Expect = 1.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATP 138
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGGVD 25
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas
aeruginosa} SCOP: c.76.1.2
Length = 536
Score = 34.0 bits (78), Expect = 0.082
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 18/84 (21%)
Query: 173 PTPNPHQL----------HSSSMYGPSMNSMMTGHHHHHHHSGALPASHHHGATHHPVMP 222
TPN L H++S P+ + ++TG HH G + T
Sbjct: 28 ATPNLDALAIAGLRLTDFHTASTXSPTRSMLLTGTDHHIAGIGTMA----EALTPELEGK 83
Query: 223 PGLQHPDTDTDPRELEAFAERFKQ 246
PG + + A E ++
Sbjct: 84 PGYEGH----LNERVVALPELLRE 103
Score = 32.5 bits (74), Expect = 0.22
Identities = 16/61 (26%), Positives = 23/61 (37%), Gaps = 14/61 (22%)
Query: 94 PTPNPHQL----------HSSSMYGPSMNSMMTGHHHHHHHSGALPASHHHVATPSLLLF 143
TPN L H++S P+ + ++TG HH G + TP L
Sbjct: 28 ATPNLDALAIAGLRLTDFHTASTXSPTRSMLLTGTDHHIAGIGTMA----EALTPELEGK 83
Query: 144 P 144
P
Sbjct: 84 P 84
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel,
glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Length = 1376
Score = 34.2 bits (77), Expect = 0.090
Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 10/65 (15%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSL----------LLFPQMSHHGMDGLEMLDSISSS 163
M + HHHHHH SG +P H VA+ +L FP + + M +++ S
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVASETLKTKKMEVQIKKNFPSVLQYTMTDGKVMYGQSKD 60
Query: 164 MTTLT 168
+ T+
Sbjct: 61 VRTVE 65
Score = 29.6 bits (65), Expect = 2.4
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 193 MMTGHHHHHHHSGALPASHHHGAT 216
M + HHHHHH SG +P H A+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVAS 24
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B
O-methyl tyrosine binding, magnesium binding,
aminoacylatio esterification; HET: 0A1 ANP; 1.75A
{Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A*
2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A*
Length = 290
Score = 33.7 bits (77), Expect = 0.091
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLL 141
M HHHHHHH G +P H + P+L
Sbjct: 1 MKHHHHHHHHGGLVPRGSHGASAPALT 27
Score = 32.2 bits (73), Expect = 0.23
Identities = 15/67 (22%), Positives = 19/67 (28%), Gaps = 12/67 (17%)
Query: 194 MTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTD----------PRELEAFAER 243
M HHHHHHH G +P H + P + +
Sbjct: 1 MKHHHHHHHHGGLVPRGSHGAS--APALTKSQTDRLEVLLNPKDEISLNSGKPFRELESE 58
Query: 244 FKQRRIK 250
RR K
Sbjct: 59 LLSRRKK 65
>3odm_A Pepcase, PEPC, phosphoenolpyruvate carboxylase; beta-barrel, lyase;
2.95A {Clostridium perfringens}
Length = 560
Score = 33.9 bits (77), Expect = 0.092
Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 20/71 (28%)
Query: 196 GHHHHHHHSGALPASHHHGATH-----HPVMPPGL---QHPDTDTDP----REL-EAFAE 242
GHHHHHHH HHH + H + P QHPD +E EA
Sbjct: 2 GHHHHHHH-------HHHSSGHIDDDDKHMKIPCSMMTQHPDNVETYISIQQEPAEAIKG 54
Query: 243 RFKQRRIKLGV 253
Q + LG+
Sbjct: 55 LTPQDKGGLGI 65
Score = 28.2 bits (62), Expect = 5.7
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 7/18 (38%)
Query: 117 GHHHHHHHSGALPASHHH 134
GHHHHHHH HHH
Sbjct: 2 GHHHHHHH-------HHH 12
Score = 27.8 bits (61), Expect = 7.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 118 HHHHHHHSGALPASHHHVATPSLL 141
HHHHHH SG + H+ P +
Sbjct: 7 HHHHHHSSGHIDDDDKHMKIPCSM 30
>4a4y_A Protein MXIG; protein binding, FHA domain; 1.57A {Shigella
flexneri} PDB: 2xxs_A
Length = 146
Score = 32.4 bits (73), Expect = 0.095
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 193 MMTGHHHHHHHSGALP-ASHHHGATHHPVMP 222
M + HHHHHH SG +P SH A + + P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSEAKNSNLAP 31
Score = 29.3 bits (65), Expect = 1.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2vxr_A Botulinum neurotoxin type G; hydrolase, ganglioside, protease,
recepto secreted, binding domain, metalloprotease; 1.90A
{Clostridium botulinum} PDB: 3mpp_G
Length = 482
Score = 33.8 bits (76), Expect = 0.098
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHH 218
M + HHHHHH SG +P H H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMDYKDH 26
Score = 33.0 bits (74), Expect = 0.16
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein
fold, OPPF, STRU genomics, oxford protein production
facility; 2.80A {Neisseria gonorrhoeae}
Length = 141
Score = 32.2 bits (73), Expect = 0.11
Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 33/110 (30%)
Query: 198 HHHHHH-----------SGALPASHHHGATHHP-------------VMPPGLQHPDTDTD 233
HHHHHH +G + P + D
Sbjct: 3 HHHHHHIPVTHIKCLRINGQIKCVKPISPNTTPAAEHIEHVRKNPRRKAAMDRAAARIAD 62
Query: 234 PRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283
L+A E F R+K G TQ+++ A L Q + R E+
Sbjct: 63 KIALKAGGETFVSLRMKKGFTQSELATAA---------GLPQPYLSRIEN 103
>3lnb_A N-acetyltransferase family protein; arylamine N-acetyltransferase,
NAT, acetyltrans acyltransferase; HET: COA; 2.01A
{Bacillus anthracis}
Length = 309
Score = 33.2 bits (75), Expect = 0.11
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 197 HHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRR 248
HHHHHH SG +P +H M G Q + F +R K
Sbjct: 1 HHHHHHSSGLVPRG-----SHMASMTGGQQMGRGSMMTNLQKEFFKRLKIPA 47
Score = 28.9 bits (64), Expect = 2.5
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 118 HHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSI 160
HHHHHH SG +P H + + S E +
Sbjct: 1 HHHHHHSSGLVPRGSHMASMTGGQQMGRGSMMTNLQKEFFKRL 43
>3m8e_A Putative DNA-binding protein; winged helix-turn-helix, ARSR family;
2.00A {Bacillus thuringiensis} PDB: 3m9a_A 3m8f_A
Length = 124
Score = 32.0 bits (72), Expect = 0.11
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATH 217
M + HHHHHH SG +P H H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMNRDH 25
Score = 30.9 bits (69), Expect = 0.28
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2l6m_A Protein dicer; DSRBD, hydrolase; NMR {Schizosaccharomyces pombe}
Length = 121
Score = 32.0 bits (72), Expect = 0.12
Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 193 MMTGHHHHHHHSGALP-ASHHHGATHHPV 220
M + HHHHHH SG +P SH G H V
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMKGDIEHKV 29
Score = 30.0 bits (67), Expect = 0.56
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.35.1.12
Length = 91
Score = 31.3 bits (71), Expect = 0.13
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 9/55 (16%)
Query: 229 DTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283
+ R + +Q R G+TQ D+ + I +ES
Sbjct: 3 SGSSGDRVTLEVGKVIQQGRQSKGLTQKDLATKI------NE---KPQVIADYES 48
>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF
superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}
Length = 282
Score = 32.9 bits (74), Expect = 0.15
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 8/45 (17%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPREL 237
M + HHHHHH SG +P H M P ++ L
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH--------MAPIVETAKETNSDSSL 37
Score = 28.7 bits (63), Expect = 2.8
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 114 MMTGHHHHHHHSGALPASHHH 134
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHM 21
>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid
synthase, type III PKS, acyltransferase, transferase;
2.58A {Neurospora crassa}
Length = 465
Score = 33.2 bits (75), Expect = 0.15
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 6/58 (10%)
Query: 193 MMTGHHHHHHHSGALPASHHHGA-THHPVMPP-----GLQHPDTDTDPRELEAFAERF 244
M + HHHHHH SG +P H A T + G+Q+P P ++ ++R+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAASTVAGELGLSITGLGVQYPPYSLGPDAIDILSKRY 58
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone;
HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A*
3vlf_A* 4a3v_A* 4a3t_A*
Length = 500
Score = 33.2 bits (75), Expect = 0.16
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSH 148
M + HHHHHH SG +P H + + ++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSEKETNYVENLLTQ 35
Score = 30.5 bits (68), Expect = 0.97
Identities = 12/35 (34%), Positives = 15/35 (42%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQH 227
M + HHHHHH SG +P H + L
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSEKETNYVENLLTQ 35
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger
homeobox family protein, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} SCOP: a.4.1.1
Length = 80
Score = 30.7 bits (69), Expect = 0.16
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 6/75 (8%)
Query: 315 DPDAPSVLPAGEKKRKRTSIAAPEKRSLEAY-----FAVQPRPSGEKIAAIAEKLDLKKN 369
+ + G +KR RT A +K + A + +Q R E I ++ + +
Sbjct: 5 SSGSSAEAGGGIRKRHRTKFTAEQKERMLALAERIGWRIQ-RQDDEVIQRFCQETGVPRQ 63
Query: 370 VVRVWFCNQRQKQKR 384
V++VW N +
Sbjct: 64 VLKVWLHNNKHSGPS 78
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 30.6 bits (69), Expect = 0.17
Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 319 PSVLPAGEKKRKRTSIAAPEKRSLEAYFA---VQPRPSGEKIAAIAEKLDLKKNVVRVWF 375
++ K + R LE++FA P + + + + L + ++ W
Sbjct: 19 QDMINKSTKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWV 78
Query: 376 CNQRQKQK 383
N+R+K+K
Sbjct: 79 SNRRRKEK 86
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 343
Score = 32.8 bits (74), Expect = 0.18
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 193 MMTGHHHHHHHSGALPASHHHGAT 216
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASM 24
Score = 31.2 bits (70), Expect = 0.52
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 114 MMTGHHHHHHHSGALPASHHHVAT 137
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASM 24
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix,
transcription/DNA complex; HET: DNA; 1.80A
{Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A
1rio_A 1lli_A*
Length = 92
Score = 30.8 bits (69), Expect = 0.18
Identities = 9/63 (14%), Positives = 22/63 (34%), Gaps = 6/63 (9%)
Query: 228 PDTDTDPRELEAFAERFKQRRIKLGVTQADVGKAL------ANLKLPGVGALSQSTICRF 281
P T + +++++ +LG++Q V + G+ AL+
Sbjct: 6 PLTQEQLEDARRLKAIYEKKKNELGLSQESVADKMGMGQSGVGALFNGINALNAYNAALL 65
Query: 282 ESL 284
+
Sbjct: 66 AKI 68
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 32.6 bits (75), Expect = 0.20
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHH------PVMPPGLQHPDTDTDP 234
M + HHHHHH SG +P H T PV+ G D DP
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMRRTQQGTTASPPVLDLGALGQDFAADP 48
Score = 28.0 bits (63), Expect = 6.2
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P H T
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMRRTQQ 26
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural
genomics, PSI-2, protein structure initiative; NMR
{Eubacterium rectale atcc 33656}
Length = 94
Score = 30.5 bits (69), Expect = 0.21
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 9/46 (19%)
Query: 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283
F+E K TQ ++ K++ GV S T +
Sbjct: 8 AIFSENLNSYIAKSEKTQLEIAKSI------GV---SPQTFNTWCK 44
>3qll_A Citrate lyase; beta barrel; 2.45A {Yersinia pestis}
Length = 316
Score = 32.2 bits (74), Expect = 0.22
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEM 156
M + HHHHHH SG +P H+A+ + M L+
Sbjct: 1 MGSSHHHHHHSSGLVPRG-SHMASMTGGQQMGRGSEFMSNLDT 42
Score = 29.9 bits (68), Expect = 1.5
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 193 MMTGHHHHHHHSGALPASHHHGA 215
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAS 23
>2zfn_A RTT109, regulator of TY1 transposition protein 109; histone H3
lysine 56 acetylation, DNA damage, DNA repair, NU
transcription; HET: ALY ACO; 1.90A {Saccharomyces
cerevisiae} PDB: 2rim_A 3q33_A* 3q35_A* 3q66_C* 3q68_C*
3d35_A* 3qm0_A* 3cz7_A*
Length = 460
Score = 32.5 bits (73), Expect = 0.22
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSL 140
M + HHHHHH SG +P H A SL
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAAMMSL 27
Score = 28.3 bits (62), Expect = 4.9
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 193 MMTGHHHHHHHSGALPASHHHGAT 216
M + HHHHHH SG +P H A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAAM 24
>3sgw_A Ribose 5-phosphate isomerase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, valley fever; 1.70A {Coccidioides immitis} PDB:
3sdw_A 3qd5_A*
Length = 184
Score = 31.8 bits (73), Expect = 0.23
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 119 HHHHHHSGALPASHHHVATPSLLLFPQM 146
HHHHHH G L A + + P +
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMAATPLPPL 30
Score = 28.4 bits (64), Expect = 2.9
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 198 HHHHHHSGALPAS----HHHGATHHPVM 221
HHHHHH G L A AT P +
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMAATPLPPL 30
>3sqz_A Putative hydroxymethylglutaryl-COA synthase; thiolase fold, HMG_COA
synthase, transferase; HET: COA; 1.20A {Streptococcus
mutans} PDB: 3leh_A
Length = 425
Score = 32.4 bits (73), Expect = 0.23
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 32.4 bits (73), Expect = 0.23
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 32.6 bits (75), Expect = 0.23
Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 117 GHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLD 158
GHHHHHH SG +P LL+ + + G L +LD
Sbjct: 2 GHHHHHHSSGLVPRGSATERQDRNLLY-EHAREGYSALPLLD 42
>2g0i_A Hypothetical protein SMU.848; 2-layer (alpha-beta)-sandwich,
unknown function; 1.85A {Streptococcus mutans} SCOP:
d.64.2.1 PDB: 2g0j_A
Length = 145
Score = 31.2 bits (70), Expect = 0.24
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 31.2 bits (70), Expect = 0.24
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.5 bits (63), Expect = 2.3
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 115 MTGHHHHHHHSGALPASHHHVAT 137
M HHHHHHS L H+A+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAS 23
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl
transfer, transferase; 1.53A {Streptomyces wedmorensis}
PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Length = 286
Score = 32.2 bits (73), Expect = 0.25
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 32.2 bits (73), Expect = 0.25
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3rbh_A Alginate production protein ALGE; beta-barrel, alginate export,
membrane protein, transport PR; HET: C8E; 2.30A
{Pseudomonas aeruginosa}
Length = 479
Score = 32.3 bits (72), Expect = 0.25
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 32.3 bits (72), Expect = 0.25
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 30.7 bits (68), Expect = 0.77
Identities = 11/25 (44%), Positives = 12/25 (48%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPS 139
M HHHHHHS L H+A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMANSG 25
>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A
{Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A*
3plr_A*
Length = 432
Score = 32.6 bits (75), Expect = 0.25
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGM 151
M + HHHHHH SG +P H+A+ + M
Sbjct: 1 MGSSHHHHHHSSGLVPRG-SHMASMTGGQQMGRGSEFM 37
Score = 31.4 bits (72), Expect = 0.52
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 193 MMTGHHHHHHHSGALPASHHHGA 215
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAS 23
Score = 28.7 bits (65), Expect = 3.2
Identities = 12/33 (36%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 194 MTGHHHHHHHSGALPASHHHGATHHPVMPPGLQ 226
M HHHHHHS S H G Q
Sbjct: 1 MGSSHHHHHHS-----SGLVPRGSHMASMTGGQ 28
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP
kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium
tuberculosis}
Length = 281
Score = 32.3 bits (73), Expect = 0.25
Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 12/73 (16%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRRI--K 250
M + HHHHHH SG +P H P P + A+ R+ K
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTEPDVAGAPASKPEPASTGAASA----AQLSGYSRVLLK 56
Query: 251 LGVTQADVGKALA 263
LG G+
Sbjct: 57 LG------GEMFG 63
>2ozn_A O-GLCNACASE NAGJ; EF hand, toxin; 1.60A {Clostridium perfringens}
SCOP: b.2.2.2 PDB: 2o4e_A 2jh2_A
Length = 165
Score = 31.4 bits (70), Expect = 0.26
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 31.4 bits (70), Expect = 0.26
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.9 bits (61), Expect = 3.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 115 MTGHHHHHHHSGALPASHHHVAT 137
M HHHHHHS L H+A+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAS 23
Score = 27.2 bits (59), Expect = 7.8
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 194 MTGHHHHHHHSGALPASHHHGAT 216
M HHHHHHS L H A+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAS 23
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural
genomics center for infectious disease, ssgcid, SCD,
NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Length = 301
Score = 31.9 bits (73), Expect = 0.27
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 198 HHHHHHSGALPASHHHGATHHPVM 221
HHHHHH G L A + +
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMDGFL 26
Score = 29.3 bits (66), Expect = 2.0
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 119 HHHHHHSGALPASHHH 134
HHHHHH G L A
Sbjct: 3 HHHHHHMGTLEAQTQG 18
>3tj1_A RNA polymerase I-specific transcription initiatio RRN3; heat
repeat, transcription factor, nucleus; 2.85A
{Saccharomyces cerevisiae}
Length = 649
Score = 32.6 bits (73), Expect = 0.28
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 114 MMTGHHHHHHHSGALPASHHHVA 136
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAM 23
Score = 32.2 bits (72), Expect = 0.30
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVM 221
M + HHHHHH SG +P +H +M
Sbjct: 1 MGSSHHHHHHSSGLVPR-----GSHMAMM 24
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 32.3 bits (74), Expect = 0.28
Identities = 14/39 (35%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 114 MMTGHHHHHHHSGALP-ASHHHVATPSLLLFPQMSHHGM 151
M + HHHHHH SG +P SH + L G+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTTTDRAGLGRQLQMIRGL 39
Score = 30.4 bits (69), Expect = 1.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding,
tyrosine-protein kinase, proto-oncogene, phosphoprotein,
disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo
sapiens}
Length = 326
Score = 32.0 bits (73), Expect = 0.29
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 13/59 (22%)
Query: 194 MTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRRIKLG 252
M+ +HHHHHH +P T + + D DP + F++R +K
Sbjct: 1 MSYYHHHHHHDYDIP------TTENLYFQGAMGSAFEDRDPTQ-------FEERHLKFL 46
>3e56_A Putative uncharacterized protein; alpha-beta sandwich, interlocked
homodimer, ASR1734, unknown; 2.01A {Nostoc punctiforme}
Length = 113
Score = 30.5 bits (68), Expect = 0.30
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDT 232
M + HHHHHH SG +P H + +P + + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH---MNSKALPRQINNLEVGV 37
Score = 29.4 bits (65), Expect = 0.73
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSH 148
M + HHHHHH SG +P H S L Q+++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH---MNSKALPRQINN 32
>2hfk_A Pikromycin, type I polyketide synthase pikaiv; alpha/beta
hydrolase, thioesterase; HET: E4H; 1.79A {Streptomyces
venezuelae} PDB: 2h7x_A* 2h7y_A* 2hfj_A* 1mna_A 1mn6_A
1mnq_A
Length = 319
Score = 31.9 bits (72), Expect = 0.33
Identities = 25/149 (16%), Positives = 40/149 (26%), Gaps = 19/149 (12%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSL-------LLFPQMSHHG--MDGLEMLDSISSSM 164
M + HHHHHH SG +P H + LF Q + L++L S+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSGADTGAGAGMFRALFRQAVEDDRYGEFLDVLAEASAFR 60
Query: 165 TTLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHHHSGALPASHHHGATH------- 217
+ + + + P +T
Sbjct: 61 PQFASPEACSERLDPVLLAGGPTDRAEGRAVLVGCTGTAANGGPHEFLRLSTSFQEERDF 120
Query: 218 HPVMPPGLQ---HPDTDTDPRELEAFAER 243
V PG T P +L+ +
Sbjct: 121 LAVPLPGYGTGTGTGTALLPADLDTALDA 149
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 32.0 bits (73), Expect = 0.33
Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 9/100 (9%)
Query: 52 GMNGTHGGPNGRPHQMSHH--GMDGLEMLDSISSSMTTLTPMSDPTPN-----PHQLHSS 104
+ T G +S H + + ++ + + + TP H + S
Sbjct: 311 DLKNTFCLVRGEQVVLSQHLGDLSDDGIQTQWREALRLMQNIYNFTPQYVVHDAHPGYVS 370
Query: 105 SMYGPSMN--SMMTGHHHHHHHSGALPASHHHVATPSLLL 142
+ MN + HHH H + + L
Sbjct: 371 CQWASEMNLPTQTVLHHHAHAAACLAEHQWPLDGGDVIAL 410
Score = 31.3 bits (71), Expect = 0.71
Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)
Query: 148 HHG-MDGLEMLDSISSSMTTLTPMSDPTPN-----PHQLHSSSMYGPSMNSMMTGHHHHH 201
H G + + ++ + + + TP H + S + MN HHH
Sbjct: 329 HLGDLSDDGIQTQWREALRLMQNIYNFTPQYVVHDAHPGYVSCQWASEMNLPTQTVLHHH 388
Query: 202 HHSGALPASHHHGATHHPV 220
H+ A A H V
Sbjct: 389 AHAAACLAEHQWPLDGGDV 407
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A
{Mus musculus}
Length = 243
Score = 31.6 bits (71), Expect = 0.33
Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 21/84 (25%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRRIKLG 252
M + HHHHHH SG +P + + + L E K+ +
Sbjct: 1 MGSSHHHHHHSSGLVPRG------------SHMAASEDELLLPRLPELFETSKKLLEDVE 48
Query: 253 VT---------QADVGKALANLKL 267
V Q V K L L+
Sbjct: 49 VATEPTGSRTIQDKVSKGLELLEK 72
Score = 27.4 bits (60), Expect = 8.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSS 163
M + HHHHHH SG +P H A+ LL P++ ++L+ + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAASEDELLLPRLPELFETSKKLLEDVEVA 50
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
cooperativity, maltose binding protein, MBP, sugar
binding, DNA binding protein; 2.10A {Escherichia coli}
SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Length = 421
Score = 32.1 bits (73), Expect = 0.35
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Query: 302 LEEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIA 361
+ A A + R+ DA L A + I+ + LE F + + ++ +A
Sbjct: 343 VRTAVINAASGRQTVDA--ALAAAQTAAAAA-ISPQARAFLEQVFRRKQSLNSKEKEEVA 399
Query: 362 EKLDLKKNVVRVWFCNQRQKQK 383
+K + VRVWF N+R + K
Sbjct: 400 KKCGITPLQVRVWFINKRMRSK 421
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type
secretion system, center for structural genomics of
infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB:
1aoy_A
Length = 180
Score = 31.1 bits (70), Expect = 0.35
Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 13/84 (15%)
Query: 197 HHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRRIKLGVTQA 256
HHHHHH SG + + + + P Q + AF K+ R +Q
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNAMRPSEKQD-------NLVRAFKALLKEERFG---SQG 51
Query: 257 DVGKALANLKLPGVGALSQSTICR 280
++ +AL G ++QS + R
Sbjct: 52 EIVEALKQE---GFENINQSKVSR 72
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein
structure initiative; 3.15A
{Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Length = 97
Score = 30.0 bits (67), Expect = 0.35
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 30.0 bits (67), Expect = 0.35
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine
acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Length = 507
Score = 31.8 bits (71), Expect = 0.36
Identities = 38/222 (17%), Positives = 61/222 (27%), Gaps = 20/222 (9%)
Query: 129 PASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTP-MSDPTPNPHQLHSSSMYG 187
P + L L +MS D ++ ++ L M P ++
Sbjct: 279 PVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEE 338
Query: 188 PSMNSMMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQR 247
P + + L S H P + + D + + R Q
Sbjct: 339 PKLQ---------FSYVECLLYSFHQLGRKLPDFLTAKLNAEKLKDFKIRLQYFARGLQV 389
Query: 248 RIKLGVTQADVGKALANLKL----PGVGALSQSTICRFESLTLSHNNMIALKPILQAWLE 303
I+ + A GK LK V AL + L H + +W
Sbjct: 390 YIR-QLRLALQGKTGEALKTEENKIKVVALKITNNINVLIKDLFHIPPSYKSTVTLSWKP 448
Query: 304 EAEAQAKNKRRDPDA-----PSVLPAGEKKRKRTSIAAPEKR 340
+ + KR D P AG K+ R P +
Sbjct: 449 VQKVEIGQKRASEDTTSGSPPKKSSAGPKRDARQIYNPPSGK 490
>2nsf_A Hypothetical protein CGL3021; metal binding, isomerase; 1.75A
{Corynebacterium glutamicum} SCOP: a.213.1.4 d.106.1.2
PDB: 2nsg_A
Length = 261
Score = 31.6 bits (71), Expect = 0.37
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTD 233
M + HHHHHH SG +P H H + L T
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTTFHDLPLEERLTLARLGTS 41
Score = 29.3 bits (65), Expect = 1.7
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 114 MMTGHHHHHHHSGALPASHHHVA 136
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTT 23
>3l7v_A Putative uncharacterized protein SMU.1377C; transcription; 2.26A
{Streptococcus mutans}
Length = 295
Score = 31.5 bits (71), Expect = 0.37
Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMD 152
M + HHHHHH SG +P H + QM M
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGG---QQMGRGSMT 36
Score = 27.6 bits (61), Expect = 7.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2dga_A Beta-glucosidase; alpha/beta barrel, hydrolase; 1.80A {Triticum
aestivum} PDB: 3aiq_A* 3air_A* 3ais_A* 3aiu_A 3aiv_A*
3aiw_A*
Length = 565
Score = 31.8 bits (73), Expect = 0.39
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 4/58 (6%)
Query: 118 HHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMSDPTP 175
HHHHHH SG +P T + + MD ++ TP P
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAA----AKFERQHMDSPDLGTDDDDKAMAGTPSKPAEP 55
>3l1n_A MP1P, cell WALL antigen; helix-turn-helix, protein-ligand complex,
lipid binding PROT; HET: PLM; 1.30A {Penicillium
marneffei}
Length = 194
Score = 31.1 bits (69), Expect = 0.39
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMS 147
M + HHHHHH SG +P H + + S
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGS 34
Score = 29.1 bits (64), Expect = 1.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 193 MMTGHHHHHHHSGALPASHHHGAT 216
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASM 24
>3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD
binding, isomerase; HET: NAD; 2.55A {Helicobacter
pylori}
Length = 362
Score = 31.5 bits (72), Expect = 0.42
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 73 DGL-EMLDSISSSMTTLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHHH 124
G+ + L I + + ++ G ++S TGHHHHHHH
Sbjct: 312 SGIKDYLPHIHAIFKGQRAKGELNSKLEGKPIPNLLG--LDSTRTGHHHHHHH 362
Score = 31.5 bits (72), Expect = 0.42
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 152 DGL-EMLDSISSSMTTLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHHH 203
G+ + L I + + ++ G ++S TGHHHHHHH
Sbjct: 312 SGIKDYLPHIHAIFKGQRAKGELNSKLEGKPIPNLLG--LDSTRTGHHHHHHH 362
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative
initiation, ATP-binding, DNA- binding, hydrolase,
nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB:
3ezk_A*
Length = 592
Score = 31.9 bits (71), Expect = 0.43
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATP 138
M + HHHHHH SG +P H + P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMLEDP 25
Score = 29.9 bits (66), Expect = 1.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3gio_A Putative uncharacterized protein; antiparallel beta sheet,
four-helix bundle, loop, DNA binding protein; 2.40A
{Helicobacter pylori}
Length = 186
Score = 31.0 bits (69), Expect = 0.43
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATH 217
M + HHHHHH SG +P H T
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMPNTS 25
Score = 30.6 bits (68), Expect = 0.65
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQ 145
M + HHHHHH SG +P H T F Q
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMPNTSQRNSFLQ 32
>2p0u_A Stilbenecarboxylate synthase 2; polyketide synthase, PKS type
transferase; 1.90A {Marchantia polymorpha}
Length = 413
Score = 31.5 bits (71), Expect = 0.43
Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 10/61 (16%)
Query: 194 MTGHHHHHHHSGALPASHHHGATH-----HPVMPP-----GLQHPDTDTDPRELEAFAER 243
M HHHHHHH G +P H G++ V P G P + F
Sbjct: 1 MKHHHHHHHHGGLVPRGSHGGSSRSRLIAQAVGPATVLAMGKAVPANVFEQATYPDFFFN 60
Query: 244 F 244
Sbjct: 61 I 61
Score = 29.2 bits (65), Expect = 2.4
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 115 MTGHHHHHHHSGALPASHH 133
M HHHHHHH G +P H
Sbjct: 1 MKHHHHHHHHGGLVPRGSH 19
Score = 27.7 bits (61), Expect = 6.8
Identities = 10/21 (47%), Positives = 11/21 (52%)
Query: 118 HHHHHHHSGALPASHHHVATP 138
HHHHHHH G L H +
Sbjct: 3 HHHHHHHHGGLVPRGSHGGSS 23
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase;
dephosphorylation, hydrolase; 1.10A {Bacillus subtilis}
PDB: 4eti_A 1zgg_A
Length = 184
Score = 31.1 bits (71), Expect = 0.43
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHH 149
M + HHHHHH SG +P H + + S
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMD 36
Score = 29.9 bits (68), Expect = 0.80
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVM 221
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQ 29
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
barrel, oxidoreductase; HET: MLY FMN; 2.40A
{Streptococcus mutans}
Length = 345
Score = 31.4 bits (71), Expect = 0.45
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLE 155
M + HHHHHH SG +P H S+ QM M
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH---MASMTGGQQMGRGSMVSTH 39
Score = 28.3 bits (63), Expect = 5.0
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHP 219
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGG 27
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle,
antimicrobial protein; 1.80A {Enterococcus mundtii}
Length = 118
Score = 29.9 bits (67), Expect = 0.48
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 29.9 bits (67), Expect = 0.48
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 26.8 bits (59), Expect = 5.5
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPS 139
M HHHHHHS L H++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSNLK 25
>1ou5_A TRNA CCA-adding enzyme, tRNA-nucleotidyltransferase; polymerase,
translation; 3.40A {Homo sapiens} SCOP: a.173.1.1
d.218.1.4
Length = 448
Score = 31.4 bits (71), Expect = 0.49
Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 10/66 (15%)
Query: 118 HHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMSDPTPNP 177
HHHHHH SG +P S + + +DS M +P
Sbjct: 2 HHHHHHSSGLVPR-------GSGMKETAAAKFERQH---MDSPDLGTDDDDKMKLQSPEF 51
Query: 178 HQLHSS 183
L +
Sbjct: 52 QSLFTE 57
Score = 27.9 bits (62), Expect = 6.0
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 197 HHHHHHHSGALPA 209
HHHHHH SG +P
Sbjct: 2 HHHHHHSSGLVPR 14
>2qhx_A Pteridine reductase 1; oxidoreductase, short-chain
dehydrogenase/reductase, trypanosomatid, pterin salvage,
drug resistance; HET: NAP FE1; 2.61A {Leishmania major}
SCOP: c.2.1.2
Length = 328
Score = 31.3 bits (71), Expect = 0.49
Identities = 14/26 (53%), Positives = 18/26 (69%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHH 218
M + HHHHHH SG +P H G++HH
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGSSHH 26
Score = 31.3 bits (71), Expect = 0.53
Identities = 19/43 (44%), Positives = 22/43 (51%)
Query: 178 HQLHSSSMYGPSMNSMMTGHHHHHHHSGALPASHHHGATHHPV 220
H H SS P + M + HHHHHH SG +P H A PV
Sbjct: 6 HHHHHSSGLVPRGSHMGSSHHHHHHSSGLVPRGSHMTAPTVPV 48
Score = 30.5 bits (69), Expect = 0.87
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 99 HQLHSSSMYGPSMNSMMTGHHHHHHHSGALPASHH 133
H H SS P + M + HHHHHH SG +P H
Sbjct: 6 HHHHHSSGLVPRGSHMGSSHHHHHHSSGLVPRGSH 40
Score = 29.3 bits (66), Expect = 2.4
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLT 168
M + HHHHHH SG +P H SHH L S MT T
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH----------MGSSHHHHHHSSGLVPRGSHMTAPT 45
>2i39_A Protein N1, N1L protein; all alpha, viral protein; 2.20A {Vaccinia
virus} PDB: 2uxe_A
Length = 137
Score = 30.4 bits (68), Expect = 0.51
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 30.4 bits (68), Expect = 0.51
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 26.9 bits (59), Expect = 7.1
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 115 MTGHHHHHHHSGALPASHHHVAT 137
M HHHHHHS L H+ T
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMRT 23
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 31.3 bits (70), Expect = 0.51
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 114 MMTGHHHHHHHSGALP 129
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVP 16
Score = 31.3 bits (70), Expect = 0.51
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 193 MMTGHHHHHHHSGALP 208
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVP 16
>3uau_A JLPA, surface-exposed lipoprotein; adhesin, bacterial cell surface,
cell adhesion; 2.70A {Campylobacter jejuni subsp}
Length = 379
Score = 31.3 bits (70), Expect = 0.53
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 7/22 (31%)
Query: 196 GHHHHHHHSGALPASHHHGATH 217
GHHHHHHH HHH + H
Sbjct: 2 GHHHHHHH-------HHHSSGH 16
Score = 28.6 bits (63), Expect = 3.5
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 7/18 (38%)
Query: 117 GHHHHHHHSGALPASHHH 134
GHHHHHHH HHH
Sbjct: 2 GHHHHHHH-------HHH 12
Score = 27.5 bits (60), Expect = 8.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 118 HHHHHHHSGALPASHHHVATPSL 140
HHHHHH SG + H+ S+
Sbjct: 7 HHHHHHSSGHIDDDDKHMCGNSI 29
>3d31_C Sulfate/molybdate ABC transporter, permease protein; ATP-binding,
nucleotide-binding, membrane, transmembrane, transport
protein; 3.00A {Methanosarcina acetivorans} SCOP:
f.58.1.1
Length = 295
Score = 31.2 bits (71), Expect = 0.53
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 7/31 (22%)
Query: 117 GHHHHHHHSGALPASHHHVATPSLLLFPQMS 147
GHHHHHHH HHH + +L M
Sbjct: 2 GHHHHHHH-------HHHSSGENLYFQGHMK 25
Score = 28.9 bits (65), Expect = 2.7
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 7/37 (18%)
Query: 196 GHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDT 232
GHHHHHHH HHH + + ++ + T
Sbjct: 2 GHHHHHHH-------HHHSSGENLYFQGHMKAKNRKT 31
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold,
hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4}
PDB: 2o0h_A* 2o0k_A*
Length = 385
Score = 31.2 bits (69), Expect = 0.53
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATP 138
M + HHHHHH SG +P H + P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMLEDP 25
Score = 29.3 bits (64), Expect = 2.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 70
Score = 28.7 bits (63), Expect = 0.55
Identities = 11/63 (17%), Positives = 23/63 (36%)
Query: 324 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383
+G P+ + LE Y+A + I +++ L V WF ++ +
Sbjct: 3 SGSSGPLPIPPPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSRLPQPA 62
Query: 384 RMK 386
+
Sbjct: 63 EVS 65
>3fys_A Protein DEGV; fatty acid-binding, EDD fold, fatty acid-binding
protein; HET: PLM; 2.50A {Bacillus subtilis}
Length = 315
Score = 31.1 bits (71), Expect = 0.56
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGM 151
M + HHHHHH SG +P H S+ QM M
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMA---SMTGGQQMGRGSM 35
Score = 29.9 bits (68), Expect = 1.1
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 193 MMTGHHHHHHHSGALPASHHHGA 215
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAS 23
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold,
structural genomics, PSI-2; NMR
{Methanothermobacterthermautotrophicus str}
Length = 153
Score = 30.5 bits (68), Expect = 0.58
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 30.5 bits (68), Expect = 0.58
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>1oqv_A Toxin-coregulated pilus subunit; TCPA, type IV pilin, pilin, pilus
filament, forming protein, adhesin, fimbriae, cell
adhesion; 1.30A {Vibrio cholerae} SCOP: d.24.1.2 PDB:
3hrv_A
Length = 192
Score = 30.5 bits (68), Expect = 0.58
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 30.5 bits (68), Expect = 0.58
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 28.4 bits (64), Expect = 0.59
Identities = 7/36 (19%), Positives = 18/36 (50%)
Query: 350 PRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQKRM 385
P + + + + L + ++ W N+R+K+K +
Sbjct: 24 PYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 31.1 bits (69), Expect = 0.61
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 31.1 bits (69), Expect = 0.61
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3tai_A DNA double-strand break repair protein NURA; recombination,
hydrolase; HET: DNA; 2.82A {Pyrococcus furiosus} PDB:
3tal_A* 3taz_A*
Length = 471
Score = 31.1 bits (69), Expect = 0.63
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 31.1 bits (69), Expect = 0.63
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG,
short-chain alcohol reductase, fatty acid biosynthesis,
apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2
Length = 285
Score = 31.0 bits (71), Expect = 0.64
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 7/22 (31%)
Query: 196 GHHHHHHHSGALPASHHHGATH 217
GHHHHHHH HHH + H
Sbjct: 2 GHHHHHHH-------HHHSSGH 16
Score = 27.5 bits (62), Expect = 7.7
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 7/20 (35%)
Query: 117 GHHHHHHHSGALPASHHHVA 136
GHHHHHHH HHH +
Sbjct: 2 GHHHHHHH-------HHHSS 14
Score = 27.2 bits (61), Expect = 9.9
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 118 HHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMD 152
HHHHHH SG + H + +LL + ++
Sbjct: 7 HHHHHHSSGHIEGRHMKLEFMNLLSENKKENYYYC 41
>3v7i_A Putative polyketide synthase; type III polyketide synthase,
acyltransferase, transferase,; 2.90A {Streptomyces
coelicolor}
Length = 413
Score = 31.1 bits (70), Expect = 0.64
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 5/52 (9%)
Query: 198 HHHHHHSGALPASHHHGATHHPVMP-----PGLQHPDTDTDPRELEAFAERF 244
HHHHHHS + + M P + H + + RE+
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNAMAAYLCAPAVIHGEHSVETREIVEEVRGR 53
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional
regulator, transcription regulator; 1.69A {Aeromonas
hydrophila} SCOP: a.35.1.3
Length = 74
Score = 28.8 bits (65), Expect = 0.65
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 9/55 (16%)
Query: 228 PDTDTDPRELEAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFE 282
+L F +R ++ R G++Q + LA L G L +S + E
Sbjct: 2 QSHHDHYADLVKFGQRLRELRTAKGLSQ----ETLAFL----SG-LDRSYVGGVE 47
>2jve_A PROD1; LY-6, three-finger snake toxin, UPAR, CD59, LIMB
regeneration; NMR {Notophthalmus viridescens}
Length = 91
Score = 29.0 bits (64), Expect = 0.66
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 29.0 bits (64), Expect = 0.66
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 25.9 bits (56), Expect = 8.1
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 115 MTGHHHHHHHSGALPASHHHVA 136
M HHHHHHS L H+A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMA 22
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase,
GTP binding, protein binding, signali protein; HET: GNP;
2.30A {Homo sapiens}
Length = 204
Score = 30.5 bits (69), Expect = 0.67
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 114 MMTGHHHHHHHSGALPAS 131
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPRG 18
Score = 30.5 bits (69), Expect = 0.67
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 193 MMTGHHHHHHHSGALPAS 210
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPRG 18
>2zyz_A Putative uncharacterized protein PAE0789; crenarchaea,
heterotetramer, RNA PROC endonuclease, hydrolase, tRNA
processing; 1.70A {Pyrobaculum aerophilum}
Length = 116
Score = 29.7 bits (66), Expect = 0.69
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 29.7 bits (66), Expect = 0.69
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 26.6 bits (58), Expect = 6.9
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLD 158
M HHHHHHS L H+ +F + G +E LD
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMDVLQEQVFKDLKSRGFKIIEQLD 44
>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET:
SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A*
3ssm_A*
Length = 419
Score = 31.1 bits (69), Expect = 0.71
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATH 217
M + HHHHHH SG +P H A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTAQT 25
Score = 28.8 bits (63), Expect = 3.5
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 114 MMTGHHHHHHHSGALPASHHHVAT 137
M + HHHHHH SG +P H A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTAQ 24
>2vu9_A Botulinum neurotoxin A heavy chain; hydrolase, metalloprotease,
ganglioside, metal-B toxin, protease, membrane,
receptor, secreted; HET: BGC GAL SIA NGA; 1.6A
{Clostridium botulinum} PDB: 2vua_A 3fuo_A
Length = 444
Score = 31.1 bits (69), Expect = 0.71
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 31.1 bits (69), Expect = 0.71
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA
complex, RNA binding protein/RNA complex; NMR {Homo
sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Length = 229
Score = 30.4 bits (68), Expect = 0.76
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPG 224
M + HHHHHH SG +P H G P +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGRIAIPGLAGA 32
>2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC,
structural genomics, struc genomics consortium, lyase;
HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB:
2guu_A*
Length = 353
Score = 30.6 bits (68), Expect = 0.79
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSN 20
Score = 30.6 bits (68), Expect = 0.79
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSN 20
>2g7r_A Mucosa-associated lymphoid tissue lymphoma transl protein 1; death
domain, chromosomal translocation, hydrolase; 2.70A
{Homo sapiens}
Length = 117
Score = 29.4 bits (65), Expect = 0.85
Identities = 16/56 (28%), Positives = 22/56 (39%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRR 248
M + HHHHHH SG +P P++ + D + R AE R
Sbjct: 1 MGSSHHHHHHSSGLVPRGSTLNRLREPLLRRLSELLDQAPEGRGWRRLAELAGSRG 56
Score = 27.8 bits (61), Expect = 2.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 114 MMTGHHHHHHHSGALPAS 131
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPRG 18
>2xqo_A Cellulosome enzyme, dockerin type I; hydrolase; HET: MSE CTR; 1.40A
{Clostridium thermocellum}
Length = 243
Score = 30.2 bits (67), Expect = 0.89
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 193 MMTGHHHHHHHSGALPASHHHGA---THHPVMPPGLQHPDTDTDPRELEAFAERFKQRRI 249
M + HHHHHH SG +P H + T ++ G P T EL A A K +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASPANTQSGILNDGYFPPGTSK--HELIARASSLKVSEV 58
Query: 250 KLGVTQ 255
K + +
Sbjct: 59 KAIIKK 64
Score = 29.8 bits (66), Expect = 1.2
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P H+A+P+
Sbjct: 1 MGSSHHHHHHSSGLVPRG-SHMASPA 25
>2wst_A Putative fiber protein; viral protein; 3.20A {Porcine adenovirus 4}
Length = 208
Score = 30.0 bits (67), Expect = 0.93
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 30.0 bits (67), Expect = 0.93
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.3 bits (60), Expect = 6.6
Identities = 16/62 (25%), Positives = 18/62 (29%), Gaps = 15/62 (24%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMSDPT 174
M HHHHHHS L H+A+ I T T P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAS--------------MTGGQQGRILVYPTLWTG-PAPE 45
Query: 175 PN 176
N
Sbjct: 46 AN 47
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 30.7 bits (68), Expect = 0.94
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 17/59 (28%)
Query: 82 SSSMTTLTPMSDPTP---------NPHQLHSS-SMYGP-------SMNSMMTGHHHHHH 123
++ T TP P+ +PH S YG ++S TGHHHHHH
Sbjct: 622 ATIKTFRTPELPPSSAHRSHLKHRHPHHYKPSPERYGKPIPNPLLGLDSTRTGHHHHHH 680
Score = 30.7 bits (68), Expect = 0.94
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 17/59 (28%)
Query: 161 SSSMTTLTPMSDPTP---------NPHQLHSS-SMYGP-------SMNSMMTGHHHHHH 202
++ T TP P+ +PH S YG ++S TGHHHHHH
Sbjct: 622 ATIKTFRTPELPPSSAHRSHLKHRHPHHYKPSPERYGKPIPNPLLGLDSTRTGHHHHHH 680
>1uoz_A Putative cellulase; hydrolase, glycoside hydrolase, family 6; HET:
GLC SSG; 1.10A {Mycobacterium tuberculosis} SCOP:
c.6.1.1 PDB: 1up3_A* 1up0_A* 1up2_A*
Length = 315
Score = 30.4 bits (68), Expect = 0.97
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 7/29 (24%)
Query: 196 GHHHHHHHSGALPASHHHGATHHPVMPPG 224
GHHHHHHH HHH + H
Sbjct: 2 GHHHHHHH-------HHHSSGHIEGRHMA 23
Score = 29.2 bits (65), Expect = 2.5
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 7/22 (31%)
Query: 117 GHHHHHHHSGALPASHHHVATP 138
GHHHHHHH HHH +
Sbjct: 2 GHHHHHHH-------HHHSSGH 16
Score = 28.9 bits (64), Expect = 3.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 118 HHHHHHHSGALPASHHHVATP 138
HHHHHHH + H+A P
Sbjct: 5 HHHHHHHHSSGHIEGRHMANP 25
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD;
1.81A {Streptomyces coelicolor}
Length = 71
Score = 28.2 bits (63), Expect = 1.0
Identities = 6/59 (10%), Positives = 18/59 (30%), Gaps = 9/59 (15%)
Query: 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES--LTLSHNNMIAL 294
+ + + R + G++ V + G + +E ++ + L
Sbjct: 7 KQLGAKLRAIRTQQGLSLHGVEEKSQ-------GRWKAVVVGSYERGDRAVTVQRLAEL 58
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 30.8 bits (69), Expect = 1.0
Identities = 27/138 (19%), Positives = 50/138 (36%), Gaps = 24/138 (17%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQ-------------HPDTDTDPRELEA 239
M + HHHHHH + + PP + P D R L
Sbjct: 1 MASSHHHHHH--SSGLVPRGSSGSSMAARPPRAKPAPRRRAAQPSDASPAAQVDLRTLGY 58
Query: 240 FAERFKQRRIKLGVTQADVGKALANLKLPG--VGALSQSTICRFESLTLSHNNMIALKP- 296
++ ++ + K+ T A +AL + ALSQ ++ +++ ++I P
Sbjct: 59 SQQQQEKIKPKVRSTVAQHHEALVGHGFTHAHIVALSQ-HPAALGTVAVTYQHIITALPE 117
Query: 297 -----ILQAWLEEAEAQA 309
I+ + + A+A
Sbjct: 118 ATHEDIVGVGKQWSGARA 135
Score = 30.4 bits (68), Expect = 1.2
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P + +
Sbjct: 1 MASSHHHHHHSSGLVPRGSSGSSMAA 26
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein,
unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Length = 240
Score = 29.9 bits (66), Expect = 1.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 29.9 bits (66), Expect = 1.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2f4l_A Acetamidase, putative; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2, hydrolase; 2.50A {Thermotoga maritima} SCOP:
b.23.3.1
Length = 297
Score = 30.0 bits (67), Expect = 1.1
Identities = 10/26 (38%), Positives = 12/26 (46%), Gaps = 1/26 (3%)
Query: 198 HHHHHHSGALPASHHHGATHHPVMPP 223
HHHHHH +PA + M P
Sbjct: 7 HHHHHHMKVVPAQRCVY-SFSANMAP 31
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold,
farnesyl diphosphate, metal-binding, lyase, magnesium;
HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A
3lgk_A 3lg5_A*
Length = 382
Score = 30.1 bits (67), Expect = 1.1
Identities = 19/46 (41%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 193 MMTGHHHHHHHSGALPASHH------HGATHHP---VMPPGLQHPD 229
M + HHHHHH SG +P H HG T P +PP L+ P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMVHAFPHGTTATPTAIAVPPSLRLPV 46
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase;
glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A
{Streptococcus mutans}
Length = 243
Score = 29.8 bits (67), Expect = 1.1
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 193 MMTGHHHHHHHSGALPASHH-HGATHHPVMPPGLQHPDTDTDPRELEAFAERF 244
M + HHHHHH SG +P H T M G D L+ A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSMTLAKDIARDLLDIKAVYL 53
Score = 27.5 bits (61), Expect = 7.4
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEML 157
M + HHHHHH SG +P H + QM M + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGG---QQMGRGSMTLAKDI 41
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Length = 116
Score = 28.7 bits (65), Expect = 1.1
Identities = 6/33 (18%), Positives = 13/33 (39%)
Query: 233 DPRELEAFAERFKQRRIKLGVTQADVGKALANL 265
+ + R K + ++Q + +LA L
Sbjct: 33 EQDQASKDFNRSKALFSQSAISQKEYDSSLATL 65
>2ium_A Avian adenovirus CELO long fibre; receptor-binding, trimeric
proteins, viral fibres, beta-sandwich, fiber protein,
viral protein; 1.6A {Avian adenovirus GAL1} PDB: 2iun_A
Length = 248
Score = 29.9 bits (66), Expect = 1.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 29.9 bits (66), Expect = 1.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.2 bits (59), Expect = 7.8
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 115 MTGHHHHHHHSGALPASHHHVAT 137
M HHHHHHS L H+A+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAS 23
>3oq0_A DBF4, protein DNA52; DDK, BRCT, RAD53, replication checkpoint, FHA
domain, regula subunit of DDK, CDC7, phosphorylation,
nuclear; 2.70A {Saccharomyces cerevisiae}
Length = 151
Score = 29.3 bits (65), Expect = 1.2
Identities = 12/33 (36%), Positives = 14/33 (42%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLLLFPQMS 147
M HHHHHHS L H+ S + F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMKRDSRIYFDITD 33
Score = 27.0 bits (59), Expect = 6.9
Identities = 9/14 (64%), Positives = 9/14 (64%)
Query: 194 MTGHHHHHHHSGAL 207
M HHHHHHS L
Sbjct: 1 MGSSHHHHHHSSGL 14
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding
protein, binding protein; NMR {Enterobacteria phage P2}
PDB: 2xcj_A
Length = 99
Score = 28.7 bits (64), Expect = 1.2
Identities = 7/44 (15%), Positives = 15/44 (34%), Gaps = 9/44 (20%)
Query: 240 FAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFES 283
+E+ R +++ + GV T+ +ES
Sbjct: 5 ISEKIVLMRKSEYLSRQQLADLT------GV---PYGTLSYYES 39
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 30.3 bits (69), Expect = 1.2
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 19/67 (28%)
Query: 119 HHHHHHSGALPASHHHVATPSLLLFPQM------SHHGMDGLEMLDSISSSMTTLTPMSD 172
HHHHHHS + ++ S++ + L++ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMM--SKWMQEWSTETVAPHDLKLAE-----------RPV 48
Query: 173 PTPNPHQ 179
P H
Sbjct: 49 PEAGEHD 55
>1z9v_A Conserved hypothetical protein MTH0776; solution structure,
archaeabacterium, unknown function; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 121
Score = 28.9 bits (64), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.9 bits (64), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 26.6 bits (58), Expect = 8.9
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 115 MTGHHHHHHHSGALPASHHHVAT 137
M HHHHHHS L H+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTF 23
>2p92_A Hypothetical protein; unknown function; HET: MSE; 1.73A
{Staphylococcus aureus} SCOP: d.64.2.1
Length = 126
Score = 29.1 bits (65), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 29.1 bits (65), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2x7m_A Archaemetzincin; metalloprotease, protease, hydrolase, metal-bindi;
1.50A {Methanopyrus kandleri}
Length = 195
Score = 29.7 bits (66), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 29.7 bits (66), Expect = 1.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3k3p_A D-alanine--D-alanine ligase; D-alanyl-alanine synthetase,
ATP-binding, cell shape, cell W biogenesis/degradation,
magnesium, manganese; 2.23A {Streptococcus mutans}
Length = 383
Score = 29.9 bits (68), Expect = 1.2
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMD 152
M + HHHHHH SG +P H S+ QM M
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH---MASMTGGQQMGRGSMS 36
Score = 28.8 bits (65), Expect = 3.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2c3f_A HYLP1, hyaluronidase, phage associated; lyase, hyaluronan lyase,
phage tail fibre, triple-stranded beta- helix, scarlet
fever; 1.81A {Streptococcus pyogenes} SCOP: b.108.1.5
PDB: 2yvv_A* 2yw0_A 2yx2_A 2pk1_A* 3eka_A* 2dp5_A
Length = 358
Score = 30.0 bits (66), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPV 220
M + HHHHHH SG +P H + + P+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSSENIPL 28
Score = 29.6 bits (65), Expect = 1.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2kv9_B Integrin beta-3; platelet glycoprotein IIIA, GPIIIA, C adhesion;
NMR {Homo sapiens}
Length = 75
Score = 28.0 bits (62), Expect = 1.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.0 bits (62), Expect = 1.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein,
signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB:
2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A*
3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B*
1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Length = 201
Score = 29.7 bits (67), Expect = 1.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATH 217
M + HHHHHH SG +P H A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAAIR 25
Score = 28.9 bits (65), Expect = 1.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2lie_A CCL2 lectin; sugar binding protein; NMR {Coprinopsis cinerea} PDB:
2liq_A*
Length = 153
Score = 29.1 bits (64), Expect = 1.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 115 MTGHHHHHHHSGALPA 130
M HHHHHHHSG PA
Sbjct: 1 MGHHHHHHHHSGDSPA 16
Score = 29.1 bits (64), Expect = 1.4
Identities = 12/16 (75%), Positives = 12/16 (75%)
Query: 194 MTGHHHHHHHSGALPA 209
M HHHHHHHSG PA
Sbjct: 1 MGHHHHHHHHSGDSPA 16
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger
apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A
3u3s_A 3u3t_A 3u3v_A 3qo4_A
Length = 313
Score = 29.9 bits (66), Expect = 1.4
Identities = 15/70 (21%), Positives = 21/70 (30%), Gaps = 12/70 (17%)
Query: 55 GTHGGPNGRPHQMSHHGMDGLEMLDSISSSMTTLTP-MSDPTPNPHQLHSSSMYGPSMNS 113
G H+ + +E SS P P N H+ +
Sbjct: 255 QVVNHQQGPHHRHILKLLPSMEATGGEKSSTPIKGPKRGHPRQNLHK-----------HF 303
Query: 114 MMTGHHHHHH 123
+ HHHHHH
Sbjct: 304 DINEHHHHHH 313
>2q2k_A Hypothetical protein; protein-DNA, partition, segregation, PARB,
DNA binding protein/DNA complex; HET: DNA 5IU EPE; 3.00A
{Staphylococcus aureus}
Length = 70
Score = 27.8 bits (61), Expect = 1.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 114 MMTGHHHHHHHSGALPASH 132
M + HHHHHH SG +P SH
Sbjct: 1 MGSSHHHHHHSSGLVPGSH 19
Score = 27.8 bits (61), Expect = 1.4
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 193 MMTGHHHHHHHSGALPASH 211
M + HHHHHH SG +P SH
Sbjct: 1 MGSSHHHHHHSSGLVPGSH 19
>2vq9_A RNAse 1, RNAse ZF-3E; nuclease, evolution, hydrolase, zebrafish,
polymorphism, endonuclease, ribonucleases; 1.85A {Danio
rerio}
Length = 148
Score = 29.2 bits (65), Expect = 1.5
Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 16/52 (30%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGL---------QHPDTDTDPR 235
M + HHHHHH SG +P H + P + QH +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH-------MQPAEIRRRYEHFLTQHVYGGITEQ 45
>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW
YORK research center for structural genomics; HET: TLA;
1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A
3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A
3quc_A 3qub_A 3qu4_A
Length = 243
Score = 29.6 bits (67), Expect = 1.5
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 7/44 (15%)
Query: 116 TGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDS 159
+ HHHHHH SG +P H +LF MDG+ + +S
Sbjct: 2 SSHHHHHHSSGLVPRGSHMRKKLKAVLF------DMDGV-LFNS 38
>2es4_D Lipase chaperone; protein-protein complex, steric chaperone,
triacylglycerol hydrolase, all alpha helix protein, A/B
hydrolase fold; 1.85A {Burkholderia glumae} SCOP:
a.137.15.1
Length = 332
Score = 29.8 bits (66), Expect = 1.5
Identities = 15/49 (30%), Positives = 16/49 (32%), Gaps = 8/49 (16%)
Query: 196 GHHHHHHHSGALPASHHHGATHHPVMP-PGLQHPDTDTDPRELEAFAER 243
GHHHHHHH HHH + H P P A
Sbjct: 1 GHHHHHHH-------HHHSSGHIEGRHMPAAPSPAPAGAVAGGPAAGVP 42
Score = 27.8 bits (61), Expect = 5.6
Identities = 13/84 (15%), Positives = 20/84 (23%), Gaps = 6/84 (7%)
Query: 117 GHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMSDPTPN 176
GHHHHHHH HH P G + + ++
Sbjct: 1 GHHHHHHH------HHHSSGHIEGRHMPAAPSPAPAGAVAGGPAAGVPAAASGAAEAAMP 54
Query: 177 PHQLHSSSMYGPSMNSMMTGHHHH 200
++ G +
Sbjct: 55 LPAALPGALAGSHAPRLPLAAGGR 78
>3jum_A Phenazine biosynthesis protein A/B; chirality, drug design,
medicinal CH inhibitor, biosynthetic protein; HET: AOD;
1.45A {Burkholderia SP} PDB: 3b4o_A* 3b4p_A* 3dzl_A*
3ex9_A 3cnm_A* 3jun_A* 3juo_A* 3jup_A* 3juq_A*
Length = 185
Score = 29.4 bits (65), Expect = 1.5
Identities = 13/36 (36%), Positives = 16/36 (44%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHH 149
M + HHHHHH SG +P H SL +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSDVESLENTSENRAQ 36
>2qyg_A Ribulose bisphosphate carboxylase-like protein 2;
beta-alpha-barrel, unknown function; 3.30A
{Rhodopseudomonas palustris}
Length = 452
Score = 30.1 bits (67), Expect = 1.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 30.1 bits (67), Expect = 1.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio
rerio}
Length = 780
Score = 30.0 bits (67), Expect = 1.6
Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 3/92 (3%)
Query: 145 QMSHHGMDGLEMLDSISSSMTTLTPMSDPTPNPHQLHSSSMY-GPSMNSMMTGHHHHHHH 203
+ G GL++ S + + +M P M M GHH +
Sbjct: 688 TWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGMDPMMEHEMAGHHPGPDY 747
Query: 204 SGALPASHHHGATHHPVMPPGLQHPDT--DTD 233
H +PPG + DTD
Sbjct: 748 PVDGLPDLGHTQDLIDGLPPGDSNQLAWFDTD 779
>4af8_A Metacaspase MCA2; hydrolase, cysteine peptidase, caspase/hemoglobin
fold; 1.40A {Trypanosoma brucei} PDB: 4afp_A 4afv_A
4afr_A
Length = 367
Score = 30.0 bits (66), Expect = 1.6
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 2/81 (2%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLL--LFPQMSHHGMDGLEMLDSISSSMTTLTPMS 171
M + HHHHHH SG +P H + + L + G+ L + S + L
Sbjct: 1 MGSSHHHHHHSSGLVPGGSHMCSLITQLCDAGQLADYVGLGWLNAVSSQPYLVQALGLQP 60
Query: 172 DPTPNPHQLHSSSMYGPSMNS 192
P G +
Sbjct: 61 PPRRVDVDAAFRDAKGLHGHQ 81
Score = 29.2 bits (64), Expect = 2.8
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPG 224
M + HHHHHH SG +P H + + G
Sbjct: 1 MGSSHHHHHHSSGLVPGGSHMCSLITQLCDAG 32
>3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM
beta/alpha-barrel, PLC-like phosphodiesterase, inactive
H12A phospholipase D; HET: PGE; 1.60A {Loxosceles
intermedia} PDB: 3rlh_A*
Length = 302
Score = 29.8 bits (66), Expect = 1.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 29.8 bits (66), Expect = 1.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 28.8 bits (64), Expect = 1.7
Identities = 11/49 (22%), Positives = 13/49 (26%)
Query: 197 HHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFK 245
HHHHHHHS H + E E +
Sbjct: 6 HHHHHHHSSGHIEGRHMLEEPAASFSQPGSMGLDKNTVHDQEHIMEHLE 54
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha
helices, oxidoreductase; HET: NDP MTX; 1.95A
{Streptococcus pneumoniae}
Length = 190
Score = 29.1 bits (66), Expect = 1.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 115 MTGHHHHHHHSGALPASHH 133
M HHHHHHH G +P H
Sbjct: 1 MKHHHHHHHHGGLVPRGSH 19
Score = 29.1 bits (66), Expect = 1.7
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 194 MTGHHHHHHHSGALPASHH 212
M HHHHHHH G +P H
Sbjct: 1 MKHHHHHHHHGGLVPRGSH 19
>1y08_A Hypothetical protein SPY0861; cysteine proteinase, papain-like fold
with major insertions, hydrolase; 1.93A {Streptococcus
pyogenes} SCOP: d.3.1.12 PDB: 2avw_A 2au1_A
Length = 323
Score = 29.6 bits (65), Expect = 1.7
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 114 MMTGHHHHHHHSGALPASHHHV 135
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMI 22
Score = 29.2 bits (64), Expect = 2.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix,
TETR fold, structural genomics, PSI, prote structure
initiative; HET: MSE; 1.52A {Rhodococcus SP}
Length = 214
Score = 29.1 bits (65), Expect = 1.8
Identities = 14/55 (25%), Positives = 20/55 (36%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQR 247
M + HHHHHH SG T P ++ + ++A F R
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGHVTSDPGTAAPVKRTAEQSRSLIVDAAGRAFATR 55
>1x9a_A Hypothetical protein TM0979; structural genomics, protein structure
initiative, PSI, northeast structural genomics
consortium, NESG, OCSP; NMR {Thermotoga maritima} SCOP:
c.114.1.2
Length = 107
Score = 28.3 bits (63), Expect = 1.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.3 bits (63), Expect = 1.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>4a0t_A Tail fiber protein; viral protein, caudovirales, podoviridae,
beta-helix, beta-S; HET: 1PE; 1.90A {Enterobacteria
phage T7} PDB: 4a0u_A
Length = 227
Score = 29.2 bits (64), Expect = 1.8
Identities = 14/38 (36%), Positives = 16/38 (42%)
Query: 197 HHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDP 234
HHHHHH SG +P T + PD TD
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAAKFERQHMDSPDLGTDD 39
>2plj_A Lysine/ornithine decarboxylase; type IV decarboxylase, beta/alpha
barrel, beta barrel, lyase; HET: P3T; 1.70A {Vibrio
vulnificus} PDB: 2plk_A*
Length = 419
Score = 29.5 bits (67), Expect = 1.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLL 141
M + HHHHHH SG +P H + S+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAHSQSIF 28
Score = 27.6 bits (62), Expect = 6.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATH 217
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAHSQ 25
>3vpi_A Type VI secretion exported 1; hydrolase; HET: MSE; 1.50A
{Pseudomonas aeruginosa} PDB: 3vpj_A
Length = 174
Score = 29.1 bits (64), Expect = 1.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 29.1 bits (64), Expect = 1.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3nj2_A DUF269-containing protein; cyanobacteria, circadium rhythms,
nitrogen fixation, unknown; 1.59A {Cyanothece SP}
Length = 174
Score = 29.1 bits (65), Expect = 1.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P H + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTNSET 26
Score = 28.7 bits (64), Expect = 2.3
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHP 228
M + HHHHHH SG +P H + + Q P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTNSETNTLLV-EQSP 35
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription
regulator complex, oxidoreductase/repressor complex,
histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens}
SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B*
2x0l_B*
Length = 235
Score = 29.3 bits (64), Expect = 1.8
Identities = 36/203 (17%), Positives = 68/203 (33%), Gaps = 17/203 (8%)
Query: 193 MMTGHHHHHHHSGALPASHHHGA---THHPVMPPGLQHPDTDTDPRELEAFAERFKQRRI 249
M + HHHHHH SG +P H + P + E + + K R
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGRPTETVPQVKKEKHSTQAKNRAK 60
Query: 250 KLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQA 309
+ + + V A+S + L ++++K +Q + A
Sbjct: 61 RKPPKGMFLSQ-------EDVEAVSANATAATTVLRQLDMELVSVKRQIQNIKQTNSALK 113
Query: 310 KNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKN 369
+ + E +K + E++ L R G AI++ + K
Sbjct: 114 EKLDGGIEPYR---LPEVIQKCNARWTTEEQLL---AVQAIRKYGRDFQAISDVIGNKSV 167
Query: 370 V-VRVWFCNQRQKQKRMKFAAQH 391
V V+ +F N R++ + +
Sbjct: 168 VQVKNFFVNYRRRFNIDEVLQEW 190
>2w1s_A Hyaluronoglucosaminidase; hexosaminidase, family 32 carbohydrate
binding module, toxin, secreted, virulence, hydrolase,
glycosidase; HET: MSE BTB; 1.45A {Clostridium
perfringens} PDB: 2w1q_A* 2w1u_A* 2wdb_A*
Length = 192
Score = 28.8 bits (64), Expect = 1.9
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLD-SISSSMTTLTPMSD 172
M + HHHHHH SG +P H + PSL+ + + +LD ++ + T D
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASNPSLIRSESWQVYEGNEANLLDGDDNTGVWYKTLNGD 60
Query: 173 PTPNPH 178
+
Sbjct: 61 TSLAGE 66
>2dch_X Putative homing endonuclease; alpha/beta fold, hydrolase; 2.06A
{Thermoproteus}
Length = 216
Score = 29.3 bits (65), Expect = 1.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 114 MMTGHHHHHHHSGALPASHHH 134
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHM 21
Score = 29.3 bits (65), Expect = 1.9
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 193 MMTGHHHHHHHSGALPASHHH 213
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHM 21
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho;
thiamine diphosphate-dependent enzyme, alpha-beta fold;
HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A*
3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Length = 845
Score = 29.7 bits (66), Expect = 2.0
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEA 239
M + HHHHHH SG +P H +PV+ Q D +E
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH---MTNPVIGTPWQKLDRPVSEEAIEG 44
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide
binding protein; 1.40A {Saccharomyces cerevisiae} PDB:
3plv_A 1m94_A 1p0r_A
Length = 93
Score = 27.6 bits (61), Expect = 2.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.6 bits (61), Expect = 2.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable
transcriptional repressor ARSR family, structural
genomics, PSI-2; 1.48A {Rhodococcus SP}
Length = 151
Score = 28.7 bits (64), Expect = 2.1
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 193 MMTGHHHHHHHSG---ALPASHHHGATHHPVMPPGLQHPDTDTDPREL 237
M + HHHHHH SG H + T P+ L + T+ +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGHMNSPTSRPLRRDPLHNALVTTNVLVV 48
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania
major}
Length = 467
Score = 29.6 bits (66), Expect = 2.1
Identities = 27/151 (17%), Positives = 44/151 (29%), Gaps = 2/151 (1%)
Query: 193 MMTGHHHHHHHSGALPASHHHGAT-HHPVMPPGLQHPDTDTDPRELEAFAERFKQRRIKL 251
M + HHHHHH SG +P H + + P EL + +R+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASKRCRQCSGDSASSSTSSLSPSELPPSKKAAGGQRVTA 60
Query: 252 GVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKN 311
V A + + + G + + S I + + AEA A
Sbjct: 61 EVEVAPITTDATSATVTAAGGAKKKATTGSPARRTSSAAKITNGDAGEL-IRTAEALAAL 119
Query: 312 KRRDPDAPSVLPAGEKKRKRTSIAAPEKRSL 342
+ + R+ T R
Sbjct: 120 NAKKSEKEIWSDVVPFVRRTTDSDFDPSRMY 150
>2qgh_A Diaminopimelate decarboxylase; lyase; HET: PLP LYS; 2.30A
{Helicobacter pylori} PDB: 3c5q_A*
Length = 425
Score = 29.4 bits (67), Expect = 2.2
Identities = 12/27 (44%), Positives = 14/27 (51%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSL 140
M + HHHHHH SG +P H L
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMFNYEEL 27
>3r1k_A Enhanced intracellular surviVal protein; GNAT, acetyltransferase,
transferase; HET: COA; 1.95A {Mycobacterium
tuberculosis}
Length = 428
Score = 29.3 bits (65), Expect = 2.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 29.3 bits (65), Expect = 2.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3vpj_E TSE1-specific immunity protein; hydrolase-hydrolase inhibitor
complex; 2.50A {Pseudomonas aeruginosa} PDB: 4fgi_B
Length = 192
Score = 28.9 bits (64), Expect = 2.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.9 bits (64), Expect = 2.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3cxt_A Dehydrogenase with different specificities; rossman fold,
oxidoreductase; HET: NAP GKR; 1.90A {Streptococcus suis}
PDB: 3cxr_A* 3o03_A*
Length = 291
Score = 29.1 bits (66), Expect = 2.3
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLF 143
M + HHHHHH SG +P H SL F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMNQQFSLDQF 30
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription
termination, RNA processi recognition, RRM; HET: CAF;
1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Length = 97
Score = 27.7 bits (62), Expect = 2.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.7 bits (62), Expect = 2.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 27.5 bits (61), Expect = 2.3
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 327 KKRKRTSIAAPEKRSLEAYFA---VQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQKQK 383
K + R LE++FA P + + + + L + ++ W +R K+K
Sbjct: 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEK 61
>3lns_A Benzaldehyde dehydrogenase; oxidoreductase, NADP+, class 3 aldehyde
dehyd adduct, covalent catalysis, mandelate racemase
pathway; HET: ZBZ NAP; 2.50A {Pseudomonas putida} PDB:
3lv1_A*
Length = 457
Score = 29.3 bits (66), Expect = 2.3
Identities = 14/52 (26%), Positives = 17/52 (32%), Gaps = 7/52 (13%)
Query: 197 HHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRR 248
HHHHHHH HHH + H + + A F R
Sbjct: 1 HHHHHHH-------HHHSSGHIDDDDKHMNYLSPAKIDSLFSAQKAYFATRA 45
>1tex_A STF0 sulfotransferase; sulfolipid, sulfation, TREH
trehalose-2-sulfate; HET: TRE; 2.60A {Mycobacterium
smegmatis} SCOP: c.37.1.5
Length = 287
Score = 29.1 bits (64), Expect = 2.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P H P+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSDHPT 26
Score = 28.0 bits (61), Expect = 4.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2g9g_A Pngase, peptide N-glycanase; beta-sandwich, hydrolase; 2.00A {Mus
musculus} SCOP: b.18.1.29
Length = 221
Score = 29.0 bits (64), Expect = 2.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 29.0 bits (64), Expect = 2.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 29.1 bits (66), Expect = 2.4
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMS 171
M + HHHHHH SG +P H+ P + + + + + ++ P+S
Sbjct: 1 MGSSHHHHHHSSGLVPRG-SHMNEPIGEPGRSPASDTAEKAQAIAAARNTFARDNPVS 57
Score = 28.7 bits (65), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal
transducer; HET: ADP; 1.90A {Nostoc}
Length = 112
Score = 27.7 bits (61), Expect = 2.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.7 bits (61), Expect = 2.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>4e3x_A Delta-1-pyrroline-5-carboxylate dehydrogenase, mitochondrial; amino
acid metabolism, proline inhibition, oxidoreductase;
HET: 16P PGE; 1.24A {Mus musculus} PDB: 3v9k_A* 3v9l_A*
3v9j_A* 3v9g_A 3v9h_A 3v9i_A
Length = 563
Score = 29.2 bits (66), Expect = 2.5
Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 2/58 (3%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDP--RELEAFAERFKQRR 248
M + HHHHHH SG +P H H P E +A + K +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMLRWKHTSSLKVANEPILAFSQGSPERDALQKALKDLK 58
>1pq4_A Periplasmic binding protein component of AN ABC T uptake
transporter; ZNUA, loop, metal-binding, metal binding
protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB:
2ov3_A 2ov1_A
Length = 291
Score = 28.9 bits (65), Expect = 2.5
Identities = 8/42 (19%), Positives = 9/42 (21%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDP 234
M H H G SH + DP
Sbjct: 91 MEKHDHSHGEEEGHDDHSHDGHDHGSESEKEKAKGALMVADP 132
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 29.1 bits (66), Expect = 2.5
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMP 222
M + HHHHHH SG +P H + P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTSAEPRAYP 30
Score = 28.8 bits (65), Expect = 3.7
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMD 152
M + HHHHHH SG +P H+ + +P HG+
Sbjct: 1 MGSSHHHHHHSSGLVPRG-SHMTSAEPRAYPFNDVHGLT 38
>3sxn_A Enhanced intracellular surviVal protein; GNAT fold,
acetyltransferase, acetyl COA binding, transferas; HET:
COA; 2.03A {Mycobacterium smegmatis}
Length = 422
Score = 29.3 bits (65), Expect = 2.5
Identities = 12/24 (50%), Positives = 13/24 (54%)
Query: 115 MTGHHHHHHHSGALPASHHHVATP 138
M HHHHHHS L H+ TP
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMITP 24
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all
alpha, transcription, transcription RE transcription
regulator; 2.50A {Corynebacterium glutamicum} PDB:
3aqs_A
Length = 245
Score = 28.7 bits (64), Expect = 2.5
Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 197 HHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRRIKL 251
HHHHHH SG +P H Q + R A++ +Q R +L
Sbjct: 1 HHHHHHSSGLVPRGSHMPTPSQHKDASTAQTDNQVPTGRR----AQKREQTRARL 51
>3pl5_A SMU_165, putative uncharacterized protein; fatty acid binding
protein, lipid binding protein; HET: PLM; 2.04A
{Streptococcus mutans}
Length = 320
Score = 29.2 bits (66), Expect = 2.5
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGM 151
M HHHHHHS L H+A+ + QM M
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMT--GGQQMGRGSM 35
Score = 27.2 bits (61), Expect = 8.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2ljm_A CSS II, cssii, beta-mammal toxin CSS2; CS ALFA beta; NMR
{Centruroides suffusus suffusus}
Length = 82
Score = 27.3 bits (60), Expect = 2.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 115 MTGHHHHHHH 124
M G HHHHHH
Sbjct: 1 MRGSHHHHHH 10
Score = 27.3 bits (60), Expect = 2.6
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 194 MTGHHHHHHH 203
M G HHHHHH
Sbjct: 1 MRGSHHHHHH 10
>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling
protein; 2.52A {Caenorhabditis elegans}
Length = 308
Score = 29.0 bits (64), Expect = 2.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 193 MMTGHHHHHHHSGALPASHHHG 214
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMA 22
Score = 28.6 bits (63), Expect = 3.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>4a3z_A GH89_CBM32, alpha-N-acetylglucosaminidase family protein;
hydrolase, family 32 carbohydrate-binding module; HET:
MSE; 1.55A {Clostridium perfringens} PDB: 4a6o_A*
Length = 161
Score = 28.3 bits (63), Expect = 2.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 114 MMTGHHHHHHHSGALPA 130
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPR 17
Score = 28.3 bits (63), Expect = 2.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 193 MMTGHHHHHHHSGALPA 209
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPR 17
>2pd0_A Hypothetical protein; structural genomics, structural genomics
consortium, SGC, UN function; HET: MES; 2.30A
{Cryptosporidium parvum}
Length = 223
Score = 29.0 bits (64), Expect = 2.6
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 114 MMTGHHHHHHHSGALPASHHHVA 136
M + HHHHHH SG +P +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSKLLG 23
Score = 27.4 bits (60), Expect = 7.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 193 MMTGHHHHHHHSGALPAS 210
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPRG 18
>3dtz_A Putative chlorite dismutase TA0507; putatvie chlorite dismutase
TA0507 thermoplasma acidophilum, structural genomics,
PSI-2; HET: MSE; 1.81A {Thermoplasma acidophilum}
Length = 244
Score = 28.8 bits (64), Expect = 2.6
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
Query: 193 MMTGHHHHHHHSGALPASHH--HGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQ 246
M + HHHHHH SG +P H T +D D R L+ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTEIYTSVLSYRLLEGKAYSDADTRSLDRMMRSIDE 56
>3ugv_A Enolase; enzyme function initiative, EFI, lyase; 2.30A {Alpha
proteobacterium BAL199}
Length = 390
Score = 29.2 bits (66), Expect = 2.6
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Query: 118 HHHHHHHSGALPASHHHVATPSLLLFPQMSHHGM 151
HHHHHH SG + + L F M +
Sbjct: 2 HHHHHHSSGVDLGTEN-------LYFQSMMAQTL 28
Score = 27.6 bits (62), Expect = 8.3
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 197 HHHHHHHSGA 206
HHHHHH SG
Sbjct: 2 HHHHHHSSGV 11
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 29.3 bits (65), Expect = 2.7
Identities = 7/46 (15%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 273 LSQSTICRFESLTLSHNNMI---ALKPILQAWLEEAEAQAKNKRRD 315
L + F + L ++ L+ + + ++ + +AK+K +
Sbjct: 923 LLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKEEAKHKASE 968
>3hzu_A Thiosulfate sulfurtransferase SSEA; niaid, ssgcid, infectious
disease, transferase structural genomics; 2.10A
{Mycobacterium tuberculosis} PDB: 3p3a_A
Length = 318
Score = 28.8 bits (65), Expect = 2.8
Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 4/48 (8%)
Query: 196 GHHHHHHHSGALPASHHHGATHHPVMPP----GLQHPDTDTDPRELEA 239
HHHHHH + G+ P P HP+ L A
Sbjct: 2 AHHHHHHMGTLEAQTQGPGSMPLPADPSPTLSAYAHPERLVTADWLSA 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 29.2 bits (65), Expect = 2.8
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 193 MMTGHHHHHHHSGALPASHHHG 214
M + HHHHHH SG +P H G
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMG 22
Score = 28.1 bits (62), Expect = 5.6
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 114 MMTGHHHHHHHSGALPAS 131
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPRG 18
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric
oxide synthase regulation, acetylation, metal-binding,
zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A*
3p8e_A* 3p8p_A*
Length = 308
Score = 28.9 bits (64), Expect = 2.8
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLLLFPQM 146
M HHHHHHS L H+A+ + L P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMAGLGHPAA 32
Score = 27.4 bits (60), Expect = 8.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics,
protein structure initiative; 2.06A {Bacillus subtilis}
Length = 206
Score = 28.5 bits (64), Expect = 2.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 99 HQLHSSSMYGPSMNSMMTGHHHHHH 123
++ N + GHHHHHH
Sbjct: 182 NRYGFYHFCDKYGNPFVEGHHHHHH 206
Score = 28.5 bits (64), Expect = 2.8
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 178 HQLHSSSMYGPSMNSMMTGHHHHHH 202
++ N + GHHHHHH
Sbjct: 182 NRYGFYHFCDKYGNPFVEGHHHHHH 206
>3p6b_A Cellulose 1,4-beta-cellobiosidase; beta-sandwich, carbohydrate
binding, sugar binding protein; 2.00A {Clostridium
thermocellum}
Length = 205
Score = 28.6 bits (63), Expect = 2.9
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQ 145
M + HHHHHH SG +P H P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMALEDKSSKLPD 32
>3r4q_A Lactoylglutathione lyase; structural genomics, PSI-biology, NEW
YORK structural genomi research consortium, nysgrc;
2.51A {Agrobacterium tumefaciens}
Length = 160
Score = 28.2 bits (63), Expect = 2.9
Identities = 8/74 (10%), Positives = 17/74 (22%), Gaps = 11/74 (14%)
Query: 196 GHHHHHHHSGALPASHHHGATHHPVMPPGLQH-----PDTDTDPRELEAFAERFKQRRIK 250
G + G H D E++ + RF+ I
Sbjct: 48 GRQMLLLFDPQESSRADANNPIPRHGAVGQGHFCFYAD----DKAEVDEWKTRFEALEIP 103
Query: 251 L--GVTQADVGKAL 262
+ + ++
Sbjct: 104 VEHYHRWPNGSYSV 117
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S
structural genomics center for infectious disease,
ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei
1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Length = 196
Score = 28.5 bits (64), Expect = 2.9
Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 198 HHHHHHSGALPASHHHGATH--HPVMPPGLQHPD 229
HHHHHH G L A + V P G P
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMSFSNV-PAGKDLPQ 35
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 28.9 bits (65), Expect = 3.0
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPV--MPPGLQHPDTDT 232
M HHHHHH ++ ++ G + PG +
Sbjct: 1 MRGSHHHHHHGMASMTGGNNMGRDLYDDDDKDPGRRMMHNSN 42
>3gz2_P Invasin IPAB, 62 kDa antigen; tetratricopeptide repeat, TPR,
chaperone, chaperone binding virulence, secreted,
transmembrane; 2.65A {Shigella flexneri}
Length = 78
Score = 27.1 bits (59), Expect = 3.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLL 141
M + HHHHHH SG +P H + T + L
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMILTSTEL 28
Score = 25.6 bits (55), Expect = 9.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 28.8 bits (64), Expect = 3.1
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPV-----MPPGLQHPDTDTDPRELE 238
M + HHHHHH SG +P H + + + P D P ++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMNRHFNATRKIDPSRGATLGDGSPNDMN 51
Score = 28.8 bits (64), Expect = 3.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 114 MMTGHHHHHHHSGALPASHHHVA 136
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAS 23
>4ak5_A Anhydro-alpha-L-galactosidase; hydrolase, marine glycoside
hydrolase, marine polysaccharide degradation, marine
cazymes, AGAR metabolism; 1.70A {Bacteroides plebeius}
PDB: 4ak7_A* 4ak6_A
Length = 404
Score = 29.0 bits (64), Expect = 3.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 114 MMTGHHHHHHHSGALPASHHHVA 136
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAS 23
Score = 28.6 bits (63), Expect = 3.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence,
acyltransferase, aminotransferase, pyridoxal PHO
transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB:
3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Length = 409
Score = 28.7 bits (65), Expect = 3.2
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 14/59 (23%)
Query: 194 MTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRRIKLG 252
M HHHHHHS L P H + P ++ + + + +
Sbjct: 1 MGSSHHHHHHSSGL--------------VPRGSHMNKPQLPDFIQNKIDHYIENYFDIN 45
Score = 27.2 bits (61), Expect = 9.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLLLFPQ 145
M HHHHHHS L H+ P L F Q
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMNKPQLPDFIQ 31
>2kn6_A Apoptosis-associated speck-like protein containin; multidomain
modular protein structure, interdomain mobility, domain,
inflammation; NMR {Homo sapiens}
Length = 215
Score = 28.7 bits (63), Expect = 3.2
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLL 142
M + HHHHHH SG +P H +L
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGRARDAIL 29
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 28.9 bits (65), Expect = 3.2
Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 198 HHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQR 247
HHHHHHS + + M P DP +EA
Sbjct: 2 HHHHHHSSGVDLGT--ENLYFQSMADSEALPSLAGDPVAVEALLRAVFGV 49
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold,
trans; 2.49A {Streptomyces SP}
Length = 385
Score = 29.0 bits (64), Expect = 3.2
Identities = 13/43 (30%), Positives = 16/43 (37%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPR 235
M + HHHHHH SG +P H + TD
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTTQNTARARADRSVSPTDPALT 43
Score = 27.8 bits (61), Expect = 6.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 28.5 bits (64), Expect = 3.3
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 119 HHHHHHSGALPASHHHVATPSLLLFPQMSHHGM 151
HHHHHH +P + + L F + M
Sbjct: 2 HHHHHHGKPIPNPLLGLDSTENLYFQGIDPFTM 34
>2xga_A Surface presentation of antigens protein SPAK; chaperone, virulence
factor; HET: MTN; 2.30A {Shigella flexneri}
Length = 153
Score = 28.2 bits (62), Expect = 3.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.2 bits (62), Expect = 3.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2k5h_A Conserved protein; structure, NESG, structural genomics, PSI-2,
protein structure initiative; NMR
{Methanothermobacterthermautotrophicus str}
Length = 101
Score = 27.5 bits (61), Expect = 3.3
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 10/34 (29%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMS 147
M + HHHHHH SG +L M+
Sbjct: 1 MGSSHHHHHHSSGR----------ENLYFQGHMA 24
Score = 26.3 bits (58), Expect = 7.2
Identities = 8/16 (50%), Positives = 8/16 (50%)
Query: 194 MTGHHHHHHHSGALPA 209
M HHHHHHS
Sbjct: 1 MGSSHHHHHHSSGREN 16
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide
antibiotics biosynthesis, structural genomics; 2.00A
{Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*
Length = 299
Score = 28.7 bits (64), Expect = 3.3
Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 7/59 (11%)
Query: 193 MMTGHHHHHHHSGALPASHHHG-ATHHPVMPPGLQHPDTDTDPREL------EAFAERF 244
M + HHHHHH G +P PV P R + E A+ +
Sbjct: 1 MGSSHHHHHHSGGLVPRGSMSNQLERGPVRTPHADVLLASVGERGVLCDFYDEGAADTY 59
>2fek_A Low molecular weight protein-tyrosine- phosphatase WZB; phosphate
binding, hydrolase; NMR {Escherichia coli K12}
Length = 167
Score = 28.3 bits (64), Expect = 3.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.3 bits (64), Expect = 3.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3la8_A SMU.1229, putative purine nucleoside phosphorylase; PUNA,
glycosyltransferase, transferase; 1.80A {Streptococcus
mutans} PDB: 3lba_A*
Length = 303
Score = 28.8 bits (65), Expect = 3.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPP 223
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMG 31
Score = 28.4 bits (64), Expect = 4.1
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEML 157
M + HHHHHH SG +P H S+ QM M L+ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH---MASMTGGQQMGRGSMSLLKKI 41
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A
{Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A
Length = 522
Score = 28.9 bits (64), Expect = 3.4
Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRRIKLG 252
M + HHHHHH SG +P H + D + A E + G
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMKLQFNLKAYFKTS-ADPTPAKDAIAALFEEANSTLLTRG 59
Query: 253 VTQADVGK 260
+ K
Sbjct: 60 APEGQGAK 67
Score = 28.5 bits (63), Expect = 3.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2cwo_A P21, RNA silencing suppressor; octamer, ring, head-TO-head,
tail-TO-tail, all alpha helical binding protein, RNA
binding protein; 3.30A {Beet yellows virus}
Length = 197
Score = 28.2 bits (62), Expect = 3.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.2 bits (62), Expect = 3.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence
form, precursor of copper enzyme., oxidoreductase; 1.40A
{Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB:
1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A
2eib_A 1t2x_A 2eid_A 2wq8_A
Length = 656
Score = 28.8 bits (63), Expect = 3.4
Identities = 26/220 (11%), Positives = 45/220 (20%), Gaps = 19/220 (8%)
Query: 32 HSASSTPTLPTLKH----DMMYHHGMNG------THGGPNGRPHQMSHHGMDGLEMLDSI 81
H+ P H DM +NG G NG + + S
Sbjct: 57 HTFYGANGDPKPPHTYTIDMKTTQNVNGLSMLPRQDGNQNGWIGRHEVYLSSDGTNWGSP 116
Query: 82 --------SSSMTTLTPMSDPTPNPHQLHSSSMYGPSMNSMM-TGHHHHHHHSGALPASH 132
S+ + P + + G S+ ++ P
Sbjct: 117 VASGSWFADSTTKYSNFETRPARYVRLVAITEANGQPWTSIAEINVFQASSYTAPQPGLG 176
Query: 133 HHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMSDPTPNPHQLHSSSMYGPSMNS 192
T L + P + +L S S+
Sbjct: 177 RWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV 236
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDT 232
+T H + L +D+
Sbjct: 237 TVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDS 276
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus
musculus} SCOP: a.4.1.1
Length = 64
Score = 26.5 bits (59), Expect = 3.4
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 325 GEKKRKRTSIAAPEKRSLEAYFA---VQPRPSGEKIAAIAEKLDLKKNVVRVWFCNQRQK 381
G + + + A L YF P PS E +A+K + + V WF N+R +
Sbjct: 3 GHIEGRHMNKQA--TEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIR 60
Query: 382 QKR 384
K+
Sbjct: 61 YKK 63
>3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.40A {Sinorhizobium meliloti}
Length = 267
Score = 28.7 bits (65), Expect = 3.5
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 119 HHHHHHSGALPASHHHVATPSLLL 142
HHHHHHS + ++ S++
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMME 25
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein
structure initiative, midwest center for structural
genomics; 2.00A {Lactobacillus plantarum WCFS1}
Length = 78
Score = 26.8 bits (60), Expect = 3.5
Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 9/63 (14%)
Query: 238 EAFAERFKQRRIKLGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPI 297
E +E + + +T +A L G+ +QST+ + ++ +
Sbjct: 6 EFVSEHLMELITQQNLTI----NRVA--TLAGL---NQSTVNAMFEGRSKRPTITTIRKV 56
Query: 298 LQA 300
Sbjct: 57 CGT 59
>3ovu_B Iron-regulated surface determinant protein H; haemoglobin, AHSP,
NEAT domain, ISDH, protein-protein comple pathogen
interaction, oxygen transport-protein binding COMP; HET:
HEM; 2.83A {Staphylococcus aureus} PDB: 3szk_F* 2h3k_A
Length = 164
Score = 27.9 bits (61), Expect = 3.6
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 195 TGHHHHHHHSGALPASHHHG--ATHHPVMPPGLQHPDTDTDPRE 236
+ HHHHHH SG +P H + + P L++ + D PRE
Sbjct: 2 SSHHHHHHSSGLVPRGSHMADESLKDAIKDPALENKEHDIGPRE 45
>3ach_A Beta-1,4-endoglucanase; beta-jellyroll, cellulose-binding domain,
hydrolase; HET: BGC; 1.40A {Clostridium josui} PDB:
3acf_A* 3acg_A* 3aci_A*
Length = 203
Score = 28.2 bits (62), Expect = 3.6
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 194 MTGHHHHHHHSGALPASHHHGATHHPVMP 222
M G HHHHHH + A H +P
Sbjct: 1 MRGSHHHHHHRAVVEAPVEHAPIGKATLP 29
>3faj_A ORF131, putative uncharacterized protein; archaeal virus,
extremophiles, bicaudavirus, structural PROT binding
protein; 1.70A {Acidianus two-tailed virus}
Length = 151
Score = 27.9 bits (61), Expect = 3.7
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHH 218
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAKYEP 26
Score = 27.9 bits (61), Expect = 4.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2qkh_A Glucose-dependent insulinotropic polypeptide receptor; GPCR,
incretin, hormone-GPCR complex, extracellular domain,
ligand binding domain, ECD; HET: QKH; 1.90A {Homo
sapiens}
Length = 135
Score = 27.8 bits (61), Expect = 3.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Query: 116 TGHHHHHHHSGALPASHHHVATPS 139
+ HHHHHH SG +P H
Sbjct: 2 SSHHHHHHSSGLVPRGSHMETGSK 25
>1s3r_A Intermedilysin; toxin; 2.60A {Streptococcus intermedius}
Length = 535
Score = 28.7 bits (63), Expect = 3.7
Identities = 9/24 (37%), Positives = 10/24 (41%)
Query: 115 MTGHHHHHHHSGALPASHHHVATP 138
M G HHHHHH A +
Sbjct: 1 MGGSHHHHHHGMASMTGGQQMGRD 24
Score = 28.7 bits (63), Expect = 4.1
Identities = 9/16 (56%), Positives = 9/16 (56%)
Query: 194 MTGHHHHHHHSGALPA 209
M G HHHHHH A
Sbjct: 1 MGGSHHHHHHGMASMT 16
>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid,
structural genomics; 1.95A {Mycobacterium
thermoresistibile}
Length = 317
Score = 28.4 bits (64), Expect = 3.8
Identities = 13/43 (30%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 119 HHHHHHSGAL------PASHHHVATPSLLLFPQMSHHGMDGLE 155
HHHHHH G L P S S + + M+ L+
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMVDPVRRSTRVSARGQGARMNRLQ 45
Score = 27.6 bits (62), Expect = 7.7
Identities = 15/48 (31%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 198 HHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFK 245
HHHHHH G L A T P T R A R +
Sbjct: 3 HHHHHHMGTLEAQ-----TQGPGSMVDPVRRSTRVSARGQGARMNRLQ 45
>1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold,
dinucleotide binding oxidoreductase; HET: NAP; 1.75A
{Drosophila melanogaster} SCOP: c.2.1.2
Length = 267
Score = 28.5 bits (64), Expect = 3.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 115 MTGHHHHHHHSGALPASHHHVAT 137
M HHHHHHS L H+ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMNS 23
Score = 28.1 bits (63), Expect = 5.3
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 194 MTGHHHHHHHSGALPASHHHGAT 216
M HHHHHHS L H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMNS 23
Score = 28.1 bits (63), Expect = 5.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.1 bits (63), Expect = 5.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 28.4 bits (64), Expect = 3.9
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 198 HHHHHHSGALPASHHHGATHHPVM 221
HHHHHH G L A + +
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMVTIK 26
>3roj_A D-fructose 1,6-bisphosphatase class 2/sedoheptulo bisphosphatase;
fructose-1,6-/sedoheptulose-1,7-bisphosphatase,
hydrolase; HET: AMP GOL; 2.30A {Synechocystis} PDB:
3rpl_A*
Length = 379
Score = 28.5 bits (64), Expect = 3.9
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMD---GLEML 157
M + HHHHHH SG +P S+ QM +D GLE++
Sbjct: 1 MGSSHHHHHHSSGLVP---RGSHMASMTGGQQMGRGSVDSTLGLEII 44
>2lmc_A Bacterial RNA polymerase inhibitor; transferase, transcription; NMR
{Enterobacteria phage T7} PDB: 2wnm_A
Length = 84
Score = 26.8 bits (58), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 26.8 bits (58), Expect = 4.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold,
protein-NADH complex, sugar binding protein; HET: NAI;
1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A*
2q1u_A*
Length = 377
Score = 28.4 bits (64), Expect = 4.0
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQM 146
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMPVIMNASKLANT 33
Score = 28.1 bits (63), Expect = 5.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>1lql_A OSMC, osmotical inducible protein C like family; NEW fold,
structural genomics, BSGC structure funded by NIH,
protein structure initiative; 2.85A {Mycoplasma
pneumoniae} SCOP: d.227.1.1
Length = 166
Score = 28.1 bits (62), Expect = 4.0
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEM---LDSISSSMTTLTPMS 171
M HHHHHH +P + + + ++ + M D ++ +
Sbjct: 1 MGSSHHHHHHDYDIPTTENLYFQGHMDKKYDITAVLNEDSSMTAISDQFQITLDARPKHT 60
Query: 172 DPTPNPHQL 180
P
Sbjct: 61 AKGFGPLAA 69
>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A
{Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB:
2f9t_A*
Length = 271
Score = 28.1 bits (63), Expect = 4.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.1 bits (63), Expect = 4.2
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.1 bits (63), Expect = 5.0
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLLL 142
M HHHHHHS L H+A+ L L
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMILEL 28
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural
genomics, lyase; 1.70A {Actinobacillus succinogenes}
PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A*
1jct_A* 3pwg_A* 1bqg_A
Length = 464
Score = 28.6 bits (64), Expect = 4.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 118 HHHHHHHSGA 127
HHHHHH SG
Sbjct: 2 HHHHHHSSGV 11
Score = 28.6 bits (64), Expect = 4.2
Identities = 8/10 (80%), Positives = 8/10 (80%)
Query: 197 HHHHHHHSGA 206
HHHHHH SG
Sbjct: 2 HHHHHHSSGV 11
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.30A {Borrelia burgdorferi}
Length = 274
Score = 28.3 bits (64), Expect = 4.2
Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 8/37 (21%)
Query: 119 HHHHHHSGALPASHHHVATPSLLLFPQMSH-----HG 150
HHHHHH G L P +L M HG
Sbjct: 3 HHHHHHMGTLE---AQTQGPGSMLGDFMYKLVLVRHG 36
>3u12_A USP37 protein; structural genomics, PH-domain, hydrolase,
structural genomi consortium, SGC; 2.08A {Homo sapiens}
Length = 141
Score = 27.4 bits (60), Expect = 4.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 114 MMTGHHHHHHHSGALPASH 132
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPRGS 19
Score = 27.4 bits (60), Expect = 4.3
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 193 MMTGHHHHHHHSGALPASH 211
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPRGS 19
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 28.4 bits (63), Expect = 4.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPS 139
M HHHHHHS L H+A+ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMT 25
Score = 28.4 bits (63), Expect = 4.8
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTG 26
Score = 28.1 bits (62), Expect = 6.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A
{Pyrococcus furiosus}
Length = 347
Score = 28.3 bits (63), Expect = 4.3
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 346 FAVQPRPSGEKIAAIAEKLDLKKN--VVRVWFCNQRQKQKR 384
+ PR GE +A + K +LK N + N + +R
Sbjct: 16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARR 56
>2vu4_A Oxygen-evolving enhancer protein 2; kDa protein, transit peptide,
higher plants, photosynthes photosystem II, membrane,
thylakoid, chloroplast; 1.98A {Spinacia oleracea}
Length = 273
Score = 28.1 bits (61), Expect = 4.4
Identities = 18/78 (23%), Positives = 26/78 (33%)
Query: 197 HHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRRIKLGVTQA 256
HHHHH S A HH + + + + KQ + V +
Sbjct: 2 HHHHHMASTACFLHHHAAISSPAAGRGSAAQRYQAVSIKPNQIVCKAQKQDDNEANVLNS 61
Query: 257 DVGKALANLKLPGVGALS 274
V + LA L G A+
Sbjct: 62 GVSRRLALTVLIGAAAVG 79
>3rlk_A A1 protein; beta-barrel, polyproline helix, structural protein;
HET: PG4; 1.76A {Enterobacteria phage qbeta} PDB:
3rlc_A*
Length = 192
Score = 27.8 bits (61), Expect = 4.4
Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 5/27 (18%)
Query: 198 HHHHHHSGALPASHHHGATHHPVMPPG 224
HHHHHHS P P+ PP
Sbjct: 2 HHHHHHSKPDP-----VIPDPPIDPPP 23
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 27.9 bits (61), Expect = 4.4
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 87 TLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHH 123
+ P TP P ++++ + HHHHHH
Sbjct: 191 STMPTVTLTPTPTATTTTTIPTAVPTTESLEHHHHHH 227
Score = 27.9 bits (61), Expect = 4.4
Identities = 10/37 (27%), Positives = 16/37 (43%)
Query: 166 TLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHH 202
+ P TP P ++++ + HHHHHH
Sbjct: 191 STMPTVTLTPTPTATTTTTIPTAVPTTESLEHHHHHH 227
Score = 27.1 bits (59), Expect = 8.6
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 86 TTLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHHH 124
T T PTP + P+ S+ HHHHHH
Sbjct: 192 TMPTVTLTPTPTATTTTTIPTAVPTTESL---EHHHHHH 227
Score = 27.1 bits (59), Expect = 8.6
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 165 TTLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHHH 203
T T PTP + P+ S+ HHHHHH
Sbjct: 192 TMPTVTLTPTPTATTTTTIPTAVPTTESL---EHHHHHH 227
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 28.2 bits (63), Expect = 4.4
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 194 MTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFA 241
M HHHHHHS L H A+ G +D + L+ FA
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMG--RVLSDDELTGLDEFA 46
Score = 28.2 bits (63), Expect = 5.2
Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 2/69 (2%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMSDP 173
M + HHHHHH SG +P H + ++ D L LD +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRVL--SDDELTGLDEFALLAENAEQAGVN 58
Query: 174 TPNPHQLHS 182
P P
Sbjct: 59 GPLPEVERV 67
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase;
ssgcid, seattle structural genomics center for in
disease; HET: FK5; 1.50A {Burkholderia pseudomallei}
PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A*
1euv_B 3v60_A 3v61_A 3v62_A*
Length = 209
Score = 27.9 bits (62), Expect = 4.5
Identities = 9/25 (36%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 119 HHHHHHSGALPASHH---HVATPSL 140
HHHHHHSG + H+
Sbjct: 3 HHHHHHSGEVKPEVKPETHINLKVS 27
>2p4s_A Purine nucleoside phosphorylase; transferase; HET: DIH; 2.20A
{Anopheles gambiae}
Length = 373
Score = 28.5 bits (64), Expect = 4.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.5 bits (64), Expect = 4.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>1t57_A Conserved protein MTH1675; structural genomics, FMN; HET: FMN;
2.30A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.49.1.2
Length = 206
Score = 28.0 bits (62), Expect = 4.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.0 bits (62), Expect = 4.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding
protein- complex; HET: DNA; 2.86A {Escherichia coli}
PDB: 3mkw_B* 3mkz_A*
Length = 189
Score = 27.8 bits (61), Expect = 4.6
Identities = 36/195 (18%), Positives = 60/195 (30%), Gaps = 41/195 (21%)
Query: 194 MTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAE-RFKQRRIK-- 250
M HHHHHHS L + R A+ + R++
Sbjct: 1 MGSSHHHHHHSSGL--------------------VPRGSHYRPTSAYERGQRYASRLQNE 40
Query: 251 -----------LGVTQADVGKALANLKLPGVGALSQSTICRFESLT-LSHNNMIALKPIL 298
+++ + + + KLP +S + F LS + AL+
Sbjct: 41 FAGNISALADAENISRKIITRCINTAKLP------KSVVALFSHPGELSARSGDALQKAF 94
Query: 299 QAWLEEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIA 358
E + QA N A + A E TS+ S + + G +
Sbjct: 95 TDKEELLKQQASNLHEQKKAGVIFEADEVITLLTSVLKTSSASRTSLSSRHQFAPGATVL 154
Query: 359 AIAEKLDLKKNVVRV 373
+K+ L + RV
Sbjct: 155 YKGDKMVLNLDRSRV 169
>3upd_A Otcase, ornithine carbamoyltransferase; structural genomics, center
for structural genomics of infec diseases, csgid; 2.91A
{Vibrio vulnificus}
Length = 358
Score = 28.4 bits (64), Expect = 4.6
Identities = 16/74 (21%), Positives = 31/74 (41%), Gaps = 8/74 (10%)
Query: 197 HHHHHHHSGALPASHHHGATHHPVMPPGLQHPD----TDTDPRELEA---FAERFKQRRI 249
HHHHHH SG + + + M L++ + D +E++ + K+ +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSNA-MAFNLRNRNFLKLLDFSTKEIQFLIDLSADLKKAKY 60
Query: 250 KLGVTQADVGKALA 263
+ +GK +A
Sbjct: 61 AGTEQKKLLGKNIA 74
>2lhu_A Mybpc3 protein; cardiac, structural protein; NMR {Mus musculus}
Length = 124
Score = 27.1 bits (59), Expect = 4.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.1 bits (59), Expect = 4.6
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3imo_A Integron cassette protein; novel, integron protein, argentinean
O139 strain, unknown function; 1.80A {Vibrio cholerae
O139}
Length = 133
Score = 27.5 bits (60), Expect = 4.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.5 bits (60), Expect = 4.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>4e98_A CUTA1 divalent ION tolerance protein; ssgcid, structural genomics,
seattle structural genomics CEN infectious disease,
signaling protein; 2.00A {Cryptosporidium parvum}
Length = 138
Score = 27.6 bits (61), Expect = 4.7
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 8/49 (16%)
Query: 119 HHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTL 167
HHHHHH G L A + M + M ++ +I +
Sbjct: 3 HHHHHHMGTLEAQTQGPGS--------MINSNMTETKIESNIILIYISA 43
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 28.3 bits (64), Expect = 4.7
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDT 230
M + HHHHHH SG +P H G+ P + DT
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHWGS---PNSSSVDKLMDT 35
>2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate
metabolism, stress response; HET: NAP ADP BMA; 2.36A
{Escherichia coli} PDB: 2x86_A*
Length = 357
Score = 28.4 bits (64), Expect = 4.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 118 HHHHHHHSGALPA 130
HHHHHH SG +P
Sbjct: 2 HHHHHHSSGLVPR 14
Score = 28.4 bits (64), Expect = 4.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 197 HHHHHHHSGALPA 209
HHHHHH SG +P
Sbjct: 2 HHHHHHSSGLVPR 14
>3p6z_C Coagulation factor V; trypsin-like serine proteinase, blood
coagulation, N-glycosy blood plasma, ppack,
hydrolase-hydrolase inhibitor complex; HET: 0G6 NAG;
1.70A {Homo sapiens} PDB: 3p70_M*
Length = 71
Score = 26.3 bits (57), Expect = 4.8
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 122 HHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMSDPTPNPHQ 179
HHH HHHV T L F + D E+ + S++ M D +
Sbjct: 2 HHH-------HHHVGTWENLYFQSIPDDDEDSYEIFEPPESTVMATRKMHDRLEPEDE 52
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A
{Metagenomes}
Length = 339
Score = 28.1 bits (63), Expect = 4.8
Identities = 17/88 (19%), Positives = 20/88 (22%), Gaps = 8/88 (9%)
Query: 45 HDMMYHHGMNGT-HGGPN-------GRPHQMSHHGMDGLEMLDSISSSMTTLTPMSDPTP 96
HD + H G H G G P + D + S
Sbjct: 252 HDHVDTHVTAGGKHPGGPITVIEYDGVPVDDWYVWKDKDYDPNFFYSESLKQGYGMFDHD 311
Query: 97 NPHQLHSSSMYGPSMNSMMTGHHHHHHH 124
P HHHHHH
Sbjct: 312 GFKGEFEQRQRRPGRKLAAALEHHHHHH 339
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET:
NDP; 2.40A {Streptomyces griseoruber}
Length = 279
Score = 28.0 bits (63), Expect = 4.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 28.0 bits (63), Expect = 4.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>1rrz_A Glycogen synthesis protein GLGS; all-helical domain, structural
genomics, montreal-kingston bacterial structural
genomics initiative, BSGI; NMR {Escherichia coli} SCOP:
a.7.10.1
Length = 86
Score = 26.7 bits (58), Expect = 4.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 26.7 bits (58), Expect = 4.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2l74_A Putative uncharacterized protein PA4608; PILZ, C-DI-GMP, unknown
function, C-DI-GMP binding P; HET: C2E; NMR {Pseudomonas
aeruginosa}
Length = 145
Score = 27.5 bits (61), Expect = 4.9
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSDQHD 26
Score = 26.8 bits (59), Expect = 7.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3f41_A Phytase; tandem repeat, protein tyrosine phosphatase, inositol
phosphatase, hydrolase; 2.30A {Mitsuokella multacida}
Length = 629
Score = 28.2 bits (62), Expect = 4.9
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELE 238
M + HHHHHH SG +P H + + Q P +P +L
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASAVVQEVSAEAQAPAVVKNPPKLA 46
>2qr3_A Two-component system response regulator; structural genomics,
signal receiver, PSI-2, protein structu initiative;
1.80A {Bacteroides fragilis}
Length = 140
Score = 27.2 bits (61), Expect = 4.9
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 137 TPSLLL----FPQMSHHGMDGLEMLDSI 160
P ++L F ++G +GL L I
Sbjct: 47 NPEVVLLDMNFTSGINNGNEGLFWLHEI 74
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 28.4 bits (64), Expect = 4.9
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
Query: 195 TGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAE 242
+ HHHHHH SG +P G+ L +PD T + E
Sbjct: 2 SSHHHHHHSSGLVP----RGSHMQTTNAVDLGNPDLYTTLERHARWRE 45
>2kfv_A FK506-binding protein 3; FKBP3-N, isomerase, nucleus,
phosphoprotein, rotamase, structural genomics, PSI-2,
protein structure initiative; NMR {Homo sapiens}
Length = 92
Score = 26.7 bits (58), Expect = 5.0
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P A P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSMAAAVPQ 26
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting,
ligase, alternative splicing, cytoplasm, UBL
conjugation, UBL conjugation pathway; 1.86A {Homo
sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Length = 253
Score = 28.0 bits (62), Expect = 5.0
Identities = 14/59 (23%), Positives = 22/59 (37%)
Query: 118 HHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMSDPTPN 176
HHHHHH SG +P T + Q G + D + + + M++
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSEFDMANIAVQ 60
>2fgx_A Putative thioredoxin; NET3, NESG, GFT-glutaredoxin-like, structural
genomics, PSI, protein structure initiative; NMR
{Nitrosomonas europaea}
Length = 107
Score = 27.1 bits (60), Expect = 5.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 114 MMTGHHHHHHHSGA 127
M T HHHHHH SG
Sbjct: 1 MGTSHHHHHHSSGR 14
Score = 27.1 bits (60), Expect = 5.0
Identities = 10/14 (71%), Positives = 10/14 (71%)
Query: 193 MMTGHHHHHHHSGA 206
M T HHHHHH SG
Sbjct: 1 MGTSHHHHHHSSGR 14
>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein]
reductase; RHLG-NADP complex, oxidoreductase; HET: NAP;
2.30A {Pseudomonas aeruginosa}
Length = 276
Score = 27.9 bits (63), Expect = 5.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.9 bits (63), Expect = 5.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation
factor, RNA polymerase, transferase transcription
complex; 1.80A {Pyrococcus furiosus}
Length = 81
Score = 26.3 bits (58), Expect = 5.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 114 MMTGHHHHHHHSGALP 129
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVP 16
Score = 26.3 bits (58), Expect = 5.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 193 MMTGHHHHHHHSGALP 208
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVP 16
>2v6e_A Protelemorase; hairpin telomere, hydrolase, resolvase,
protelomerase, DNA distortion; 3.20A {Klebsiella phage
PHIKO2}
Length = 558
Score = 28.5 bits (62), Expect = 5.2
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATH 217
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMRKVK 25
Score = 28.1 bits (61), Expect = 5.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human
hydroxysteroid dehydrogenase like 2, SDHL2, STR
genomics, structural genomics consortium; HET: NAP;
2.25A {Homo sapiens}
Length = 346
Score = 28.2 bits (63), Expect = 5.2
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTG 26
>1xma_A Predicted transcriptional regulator; southea collaboratory for
structural genomics, secsg, protein struc initiative,
PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Length = 145
Score = 27.4 bits (61), Expect = 5.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQ 20
Score = 27.4 bits (61), Expect = 5.2
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSQ 20
>2qap_A Fructose-1,6-bisphosphate aldolase; beta barrel,
fructose-1,6-bisphosphate teminal tail, lyase; 1.59A
{Leishmania mexicana} SCOP: c.1.10.1 PDB: 2qdg_A*
2qdh_A* 1epx_A 1f2j_A
Length = 391
Score = 28.2 bits (63), Expect = 5.5
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLL-FPQMSHHGMDGLEMLDSISSSMTT 166
M + HHHHHH SG +P H L P + L + +TT
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSRVTVLQSQLPAYNRLKTPYESELIATVKKLTT 54
Score = 27.4 bits (61), Expect = 9.0
Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATH-HPVMPPGLQHPDTDTDPRELEAFAER 243
M + HHHHHH SG +P H P T + EL A ++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSRVTVLQSQLPAYNRLKTPYE-SELIATVKK 51
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type
glycosyltransferase, GT-81, mannosyl-3-phosphoglyc
synthase, GDP-mannose, transferas; 2.20A {Rubrobacter
xylanophilus} PDB: 3kia_A* 3o3p_A*
Length = 387
Score = 28.3 bits (62), Expect = 5.6
Identities = 18/105 (17%), Positives = 28/105 (26%), Gaps = 5/105 (4%)
Query: 118 HHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMSDPTPNP 177
HHHHHH SG +P T + + MD ++ S+
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAA----AKFERQHMDSPDLGTDDDDKAMADIG-SEFMSTY 56
Query: 178 HQLHSSSMYGPSMNSMMTGHHHHHHHSGALPASHHHGATHHPVMP 222
H+ + + G T V+P
Sbjct: 57 HERPLGPASAAEWFRQRSYDYGQFPPEDLARRKRELGLTVSAVLP 101
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding,
DNA-binding nucleotide-binding, transcription,
transcription regulation; HET: CMP; 1.66A {Escherichia
coli}
Length = 260
Score = 27.7 bits (62), Expect = 5.7
Identities = 16/76 (21%), Positives = 18/76 (23%), Gaps = 20/76 (26%)
Query: 197 HHHHHHHSGALPASHHHGAT-------HHPVMPPGLQHPDTDT-------------DPRE 236
HHHHHH SG +P T H P D
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSMVLGKPQTDPT 61
Query: 237 LEAFAERFKQRRIKLG 252
LE F +
Sbjct: 62 LEWFLSHCHIHKYPSK 77
>2o4j_A Vitamin D3 receptor; nuclear receptor-ligand complex,
hormone/growth factor receptor complex; HET: VD4; 1.74A
{Rattus norvegicus} SCOP: a.123.1.1 PDB: 1rk3_A* 1rjk_A*
1rkh_A* 1rkg_A* 2o4r_A*
Length = 292
Score = 27.9 bits (62), Expect = 5.8
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 75 LEMLDSISSSMTTLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHH 123
LE+ + S+ M+ PN + + HHHHHH
Sbjct: 253 LEVFGN-EISLVPRGSMAISDPNSSSVDKLAA--------ALEHHHHHH 292
Score = 27.9 bits (62), Expect = 5.8
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 9/49 (18%)
Query: 154 LEMLDSISSSMTTLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHH 202
LE+ + S+ M+ PN + + HHHHHH
Sbjct: 253 LEVFGN-EISLVPRGSMAISDPNSSSVDKLAA--------ALEHHHHHH 292
>2f09_A Hypothetical protein YDHA; strand beta-barrel, structural genomics,
ontario centre for structural proteomics, OCSP, unknown
function; NMR {Escherichia coli K12} SCOP: b.61.8.1
Length = 102
Score = 26.6 bits (58), Expect = 5.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 114 MMTGHHHHHHHSGALPAS 131
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPRG 18
Score = 26.6 bits (58), Expect = 5.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 193 MMTGHHHHHHHSGALPAS 210
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPRG 18
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine,
transferase; HET: MSE SAH; 1.91A {Streptomyces
lavendulae} PDB: 3gxo_A*
Length = 369
Score = 28.1 bits (63), Expect = 5.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPP 223
M + HHHHHH SG +P H P P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTVEQTPENPG 31
Score = 27.3 bits (61), Expect = 10.0
Identities = 12/54 (22%), Positives = 17/54 (31%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLT 168
M HHHHHHS L H+ P + + D + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMTVEQTPENPGTAARAAAEETVNDILQGAWKARA 54
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 27.8 bits (61), Expect = 5.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.8 bits (61), Expect = 5.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2a2m_A Hypothetical protein BT3146; putative TENA family transcriptional
regulator, structural G joint center for structural
genomics; 1.88A {Bacteroides thetaiotaomicron} SCOP:
a.132.1.3 PDB: 2a2o_A
Length = 258
Score = 27.8 bits (61), Expect = 5.9
Identities = 8/51 (15%), Positives = 14/51 (27%)
Query: 197 HHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQR 247
HHHHHH + P + +D ++ +
Sbjct: 7 HHHHHHMNDFKNQWLRKRTFAIPASRLTGRLTTLKSDVPAADSLFWKLWNG 57
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas
campestris PV}
Length = 467
Score = 28.1 bits (63), Expect = 6.0
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 9/69 (13%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPG---LQHPDTDTDPRELEAFAERFKQRR- 248
M + HHHHHH SG +P H P ++ + +E+ + +RF Q
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMSLPAQPHKQTRQTIVRLLSSMASAKEISQYLKRFSQLDA 60
Query: 249 -----IKLG 252
+K+G
Sbjct: 61 KRFAVVKVG 69
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural
GEN PSI-2, protein structure initiative; 2.70A
{Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1
PDB: 2ofl_A*
Length = 273
Score = 27.7 bits (61), Expect = 6.0
Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRE--LEAFAERFKQR 247
M + HHHHHH SG P H R LE F++R
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGHMPATNDGPDDGAHLSKSEQTRALILETAMRLFQER 57
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase,
zinc ION, amino acid:[carrier protein] ligase; HET: AMP;
2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A*
3pzc_A*
Length = 346
Score = 28.0 bits (62), Expect = 6.0
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDS 159
M HHHHHHS L H+ L P + D L+ L
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMNIAVLPNSPDTAPQIADPLDHLAD 45
Score = 27.7 bits (61), Expect = 8.3
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRE-LEAFAER 243
M + HHHHHH SG +P H + V+P PDT + L+ A++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH---MNIAVLP---NSPDTAPQIADPLDHLADK 46
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 27.3 bits (60), Expect = 6.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.3 bits (60), Expect = 6.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2wja_A Putative acid phosphatase WZB; hydrolase; 2.50A {Escherichia coli}
Length = 168
Score = 27.1 bits (61), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.1 bits (61), Expect = 6.1
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway,
envelope stress, transduction; HET: MSE; 1.45A
{Escherichia coli str} PDB: 3qzc_A
Length = 145
Score = 27.3 bits (60), Expect = 6.1
Identities = 12/39 (30%), Positives = 14/39 (35%)
Query: 197 HHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPR 235
HHHHHH SG +P PG + T
Sbjct: 1 HHHHHHSSGLVPRGSAAEVGSGDNWHPGEELTQRSTQSH 39
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
sulfate, dehydroepiandrosterone sulfate, human placental
enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
c.76.1.2
Length = 562
Score = 28.1 bits (62), Expect = 6.1
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 11/66 (16%)
Query: 182 SSSMYGPSMNSMMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFA 241
+S + PS + MTG + + + G GL P + FA
Sbjct: 50 ASPLXTPSRAAFMTGRYPVRSG---MASWSRTGVFLFTASSGGL--------PTDEITFA 98
Query: 242 ERFKQR 247
+ K +
Sbjct: 99 KLLKDQ 104
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc
complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Length = 800
Score = 28.3 bits (62), Expect = 6.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSL 140
M HHHHHHH A + + + L
Sbjct: 1 MAHHHHHHHHHHAGAGARNMASMNRL 26
Score = 27.5 bits (60), Expect = 8.7
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 194 MTGHHHHHHHSGA 206
M HHHHHHH A
Sbjct: 1 MAHHHHHHHHHHA 13
>3ld2_A SMU.2055, putative acetyltransferase; HET: COA; 2.50A
{Streptococcus mutans}
Length = 197
Score = 27.5 bits (61), Expect = 6.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.5 bits (61), Expect = 6.3
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2jzc_A UDP-N-acetylglucosamine transferase subunit ALG13; rossmann-like
fold, endoplasmic reticulum, glycosyltransferase,
structural genomics; NMR {Saccharomyces cerevisiae} PDB:
2ks6_A
Length = 224
Score = 27.4 bits (60), Expect = 6.3
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSL 140
M HHHHHHS L H+ +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMLEGII 26
Score = 27.4 bits (60), Expect = 8.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMLEGII 26
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase,
denitrification, electron transport, periplasmic; HET:
HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2
b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A*
1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Length = 567
Score = 28.2 bits (63), Expect = 6.3
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 303 EEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKR--------SLEAYFAVQPRPSG 354
E+ + A DP AP E + APE R LE F+V R +G
Sbjct: 118 EQVDLMANYLLLDPAAPPEFGMKEMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAG 177
Query: 355 EKIAAI 360
+ IA I
Sbjct: 178 Q-IALI 182
>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta
isoform; transferase, phosphoinositide 3-kinase, RTK;
HET: GD9; 3.30A {Mus musculus}
Length = 1092
Score = 28.3 bits (62), Expect = 6.3
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 194 MTGHHHHHHHSGALPASHHHGATHHPV-MPPG 224
M+ +HHHHHH +P + + MPP
Sbjct: 1 MSYYHHHHHHDYDIPTTENLYFQGAMGSMPPA 32
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat
motif, protein binding; HET: MSE; 1.35A {Homo sapiens}
SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A
2z32_A 3ade_A
Length = 308
Score = 27.7 bits (62), Expect = 6.4
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 118 HHHHHHHSGALPASHHHVATPSLLLFP-QMSHHGMDGLEMLDSISSSMTTLTPMSDP 173
HHHHHH SG +P H L+ + LE + + + L + P
Sbjct: 4 HHHHHHSSGLVPRGSHAPKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVP 60
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping;
HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP:
a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A*
1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Length = 543
Score = 27.8 bits (62), Expect = 6.5
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 303 EEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKR--------SLEAYFAVQPRPSG 354
E+ AK + P P E + + PE R L F+V R +G
Sbjct: 100 EQITLMAKYIQHTPPQPPEWGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAG 159
Query: 355 EKIAAI 360
+ IA +
Sbjct: 160 Q-IALV 164
>4ags_A Thiol-dependent reductase 1; transferase, leishmaniasis,
DE-gluathionylation; HET: MSE GSH; 2.30A {Leishmania
infantum}
Length = 471
Score = 27.8 bits (62), Expect = 6.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLF 143
M + HHHHHH SG H+A +L L+
Sbjct: 1 MGSSHHHHHHSSGENLYFQGHMAARALKLY 30
>1js8_A Hemocyanin; glycoprotein, mollusc, oxygen-transport, thioether
bond, OXY storage-transport complex; HET: NDG NAG BMA
MAN; 2.30A {Octopus dofleini} SCOP: a.86.1.1 b.112.1.1
Length = 394
Score = 27.9 bits (61), Expect = 6.6
Identities = 12/102 (11%), Positives = 24/102 (23%)
Query: 93 DPTPNPHQLHSSSMYGPSMNSMMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMD 152
++ + + + HH+ A+ +P LF
Sbjct: 84 GSHVGIPYWDWTTTFANLPVLVTEEKDNSFHHAHIDVANTDTTRSPRAQLFDDPDKGDKS 143
Query: 153 GLEMLDSISSSMTTLTPMSDPTPNPHQLHSSSMYGPSMNSMM 194
+++ T H S + G S M
Sbjct: 144 FFYRQIALALEQTDFCDFEIQFEIGHNAIHSWVGGSSPYGMS 185
>3a16_A Oxdre, aldoxime dehydratase; beta barrel, heme protein, lyase; HET:
HEM; 1.60A {Rhodococcus erythropolis} PDB: 3a15_A*
3a17_A* 3a18_A*
Length = 373
Score = 27.7 bits (61), Expect = 6.6
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 114 MMTGHHHHHHHSGALP-ASHHHVATPSLLLFP 144
M + HHHHHH SG +P SH A L P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMESAIGEHLQCP 32
>4evy_A Aminoglycoside N(6')-acetyltransferase type 1; center for
structural genomics of infectious diseases (csgid
national institute of allergy and infectious diseases;
HET: TOY; 1.77A {Acinetobacter haemolyticus} PDB: 4f0y_A
4e8o_A
Length = 166
Score = 27.1 bits (60), Expect = 6.7
Identities = 16/101 (15%), Positives = 32/101 (31%), Gaps = 10/101 (9%)
Query: 194 MTGHHHHHHHSGALPASHHHG-------ATHHPVMPPGLQHPDTDTDPRELEAFAERFKQ 246
M HHHHHHS + G +D++ L+ + +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGMNIKPASEASLKDWLELRNKLWSDSEASHLQEMHQLLAE 60
Query: 247 RRIKLGVTQAD---VGKALANLKLPGVGALSQSTICRFESL 284
+ + +D + A+++ V S + E +
Sbjct: 61 KYALQLLAYSDHQAIAMLEASIRFEYVNGTETSPVGFLEGI 101
>3qt1_I DNA-directed RNA polymerases I, II, and III subun;
transferase-transcription complex, RNA polymerase II,
transc elongation; 4.30A {Saccharomyces cerevisiae}
Length = 133
Score = 27.1 bits (59), Expect = 6.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 114 MMTGHHHHHHHSGALPAS 131
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPRG 18
Score = 27.1 bits (59), Expect = 6.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 193 MMTGHHHHHHHSGALPAS 210
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVPRG 18
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine
kinase domain, signaling protein, transferase, inner
membrane, membrane; 2.50A {Escherichia coli}
Length = 299
Score = 27.7 bits (62), Expect = 6.8
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 118 HHHHHHHSGAL 128
HHHHHHHS
Sbjct: 6 HHHHHHHSSGH 16
Score = 27.7 bits (62), Expect = 6.8
Identities = 8/11 (72%), Positives = 8/11 (72%)
Query: 197 HHHHHHHSGAL 207
HHHHHHHS
Sbjct: 6 HHHHHHHSSGH 16
Score = 27.3 bits (61), Expect = 8.5
Identities = 11/20 (55%), Positives = 12/20 (60%), Gaps = 7/20 (35%)
Query: 196 GHHHHHHHSGALPASHHHGA 215
GHHHHHHH HHH +
Sbjct: 2 GHHHHHHH-------HHHSS 14
Score = 27.3 bits (61), Expect = 9.0
Identities = 11/18 (61%), Positives = 11/18 (61%), Gaps = 7/18 (38%)
Query: 117 GHHHHHHHSGALPASHHH 134
GHHHHHHH HHH
Sbjct: 2 GHHHHHHH-------HHH 12
>2jpi_A Hypothetical protein; alpha-helix/beta-sheet, structural genomics,
ontario centre for structural proteomics, OCSP; NMR
{Pseudomonas aeruginosa}
Length = 118
Score = 26.8 bits (59), Expect = 6.9
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 8/34 (23%)
Query: 114 MMTGHHHHHHHSG--------ALPASHHHVATPS 139
M T HHHHHH SG + S HV T S
Sbjct: 1 MGTSHHHHHHSSGRENLYFQGHMFRSTSHVRTES 34
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A
{Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A*
3k55_A
Length = 317
Score = 27.8 bits (61), Expect = 6.9
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P H +
Sbjct: 1 MRSSHHHHHHSSGLVPRGSHMESKKD 26
Score = 27.4 bits (60), Expect = 8.9
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MRSSHHHHHHSSGLVPRGSH 20
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid;
transport protein, solute-binding protein; 2.26A
{Neisseria gonorrhoeae}
Length = 291
Score = 27.7 bits (62), Expect = 7.0
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 7/22 (31%)
Query: 196 GHHHHHHHSGALPASHHHGATH 217
GHHHHHHH HHH + H
Sbjct: 2 GHHHHHHH-------HHHSSGH 16
>1q42_A MTR2, mRNA transport regulator MTR2; NTF2-fold, nuclear export,
translation; 1.75A {Candida albicans} SCOP: d.17.4.2
PDB: 1q40_A
Length = 201
Score = 27.5 bits (60), Expect = 7.0
Identities = 15/53 (28%), Positives = 22/53 (41%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFK 245
M + HHHHHH SG +P H + P L+ D + ++ F
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMNQDPTQQLEPFLKRFLASLDLLYTQPTSQPFP 53
>3s3u_A Cysteine transferase; autoproteolytic, carbapenem, biosynthesis,
DOM-fold, amidohy transferase; 1.60A {Streptomyces
cattleya}
Length = 419
Score = 27.9 bits (61), Expect = 7.2
Identities = 12/44 (27%), Positives = 14/44 (31%), Gaps = 8/44 (18%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRE 236
M + HHHHHH SG +P M P
Sbjct: 1 MGSSHHHHHHSSGLVP--------RGSHMDPEAGSRARGLKGVH 36
>2abs_A Adenosine kinase, AK; ribokinase fold, alpha/beta, intermediate
conformation, signaling protein,transferase; HET: ACP;
1.10A {Toxoplasma gondii} SCOP: c.72.1.1 PDB: 2a9z_A*
2aa0_A* 2ab8_A* 2a9y_A* 1dgm_A* 1lio_A 1lii_A* 1lij_A*
1lik_A*
Length = 383
Score = 27.8 bits (62), Expect = 7.2
Identities = 13/38 (34%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMD 152
M HHHHHHS L H+A S + M
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAVDS----SNSATGPMR 34
Score = 27.4 bits (61), Expect = 8.6
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPP 223
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAVDSSNSATG 31
Score = 27.4 bits (61), Expect = 9.4
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure
initiative, structural genomics; 2.30A {Methanosarcina
mazei}
Length = 140
Score = 27.0 bits (60), Expect = 7.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 100 QLHSSSMYGPSMNSMMTGHHHHHH 123
+ S+ G + + GHHHHHH
Sbjct: 117 CIRKSTPVGQDITGYVEGHHHHHH 140
Score = 27.0 bits (60), Expect = 7.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 179 QLHSSSMYGPSMNSMMTGHHHHHH 202
+ S+ G + + GHHHHHH
Sbjct: 117 CIRKSTPVGQDITGYVEGHHHHHH 140
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid,
borellia burgdorferi, plasmid partition protein, iodide;
2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Length = 267
Score = 27.6 bits (62), Expect = 7.3
Identities = 10/25 (40%), Positives = 11/25 (44%)
Query: 198 HHHHHHSGALPASHHHGATHHPVMP 222
HHHHHH G L A + P
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMDNKKP 27
>1usu_B AHA1; chaperone/complex, chaperone, activator, HSP90; 2.15A
{Saccharomyces cerevisiae} SCOP: d.83.2.1 PDB: 1usv_B
Length = 170
Score = 27.2 bits (60), Expect = 7.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 115 MTGHHHHHHHSGALPASH 132
M G HHHHHH A +
Sbjct: 1 MRGSHHHHHHGMASMVVN 18
Score = 27.2 bits (60), Expect = 7.3
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 194 MTGHHHHHHHSGALPASH 211
M G HHHHHH A +
Sbjct: 1 MRGSHHHHHHGMASMVVN 18
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A*
3tys_A*
Length = 88
Score = 25.9 bits (57), Expect = 7.3
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMS 171
M + HHHHHH SG + L+ + M E+ +++ S +T +
Sbjct: 1 MGSSHHHHHHSSGRENLYFQGMRVSYNKLWKLLIDRDMKKGELREAVGVSKSTFAKLG 58
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning,
protein-DNA complex, heilx-turn- helix motif,
transcription factor; HET: BRU; 2.20A {Escherichia coli}
SCOP: a.4.14.1
Length = 178
Score = 27.1 bits (60), Expect = 7.4
Identities = 12/49 (24%), Positives = 17/49 (34%), Gaps = 15/49 (30%)
Query: 231 DTDPRELEAFAERFKQRRIKLGVTQADVGKAL-------AN----LKLP 268
+ PRE A F R + G + D+ K + L LP
Sbjct: 35 ELTPRE-IA---DFIGRELAKGKKKGDIAKEIGKSPAFITQHVTLLDLP 79
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 27.7 bits (62), Expect = 7.4
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 193 MMTGHHHHHHHSGALPASHHHGAT-HHPV 220
M + HHHHHH SG +P H A V
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMNAPIETDV 29
>4a4a_A Alpha-N-acetylglucosaminidase family protein; hydrolase, 2
hydrolase, family 89 glycoside hydrolase, mucin
carbohydrate-active enzyme; HET: NDG GAL; 1.90A
{Clostridium perfringens} PDB: 2vcc_A 2vc9_A* 2vcb_A*
2vca_A
Length = 914
Score = 27.7 bits (61), Expect = 7.5
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLL 142
M + HHHHHH SG +P H + +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASGVEITE 29
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics,
singleton, predicted C region AF_0060; 2.10A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Length = 114
Score = 26.6 bits (58), Expect = 7.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 114 MMTGHHHHHHHSG 126
M + HHHHHH SG
Sbjct: 1 MGSSHHHHHHSSG 13
Score = 26.6 bits (58), Expect = 7.6
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 193 MMTGHHHHHHHSG 205
M + HHHHHH SG
Sbjct: 1 MGSSHHHHHHSSG 13
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP:
c.37.1.8
Length = 205
Score = 27.4 bits (61), Expect = 7.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHH 218
M + HHHHHH SG +P H +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMDPNQN 26
Score = 27.0 bits (60), Expect = 8.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial,
killer-O transferase; 2.40A {Homo sapiens} SCOP:
d.58.6.1
Length = 162
Score = 26.8 bits (60), Expect = 7.7
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 193 MMTGHHHHHHHSGALPASHHHGAT 216
M + HHHHHH SG +P H G
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMGTR 24
>2cwq_A Hypothetical protein TTHA0727; conserved hypothetical protein, all
alpha, structural genomi NPPSFA; 1.90A {Thermus
thermophilus} SCOP: a.152.1.4
Length = 137
Score = 26.9 bits (59), Expect = 7.7
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 193 MMTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAE 242
M + HHHHHH SG +P H TH V+ + + PR + AE
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMDRTHERVL-QAMAENLGEGLPRAIPLLAE 49
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 27.2 bits (61), Expect = 7.7
Identities = 10/39 (25%), Positives = 12/39 (30%)
Query: 85 MTTLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHH 123
T P P S + + HHHHHH
Sbjct: 224 KTYSKPKPTPRRALGARESLNSSSVDKLAAALEHHHHHH 262
Score = 27.2 bits (61), Expect = 7.7
Identities = 10/39 (25%), Positives = 12/39 (30%)
Query: 164 MTTLTPMSDPTPNPHQLHSSSMYGPSMNSMMTGHHHHHH 202
T P P S + + HHHHHH
Sbjct: 224 KTYSKPKPTPRRALGARESLNSSSVDKLAAALEHHHHHH 262
>3u28_C H/ACA ribonucleoprotein complex subunit 1; pseudouridine synthase,
pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces
cerevisiae} PDB: 3uai_C
Length = 114
Score = 26.4 bits (58), Expect = 7.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 193 MMTGHHHHHHHSGALPASHHHG 214
M + HHHHHH SG +P H G
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMG 22
>2fzp_A NRDP1, ring finger protein 41 isoform 1; E3 ligase, protein
ubiquitination, structural genomics, STRU genomics
consortium, SGC, ligase; 1.87A {Homo sapiens} SCOP:
d.345.1.1 PDB: 2gwf_B 2ogb_A
Length = 144
Score = 26.9 bits (59), Expect = 7.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 114 MMTGHHHHHHHSGALP 129
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVP 16
Score = 26.9 bits (59), Expect = 7.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 193 MMTGHHHHHHHSGALP 208
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVP 16
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 27.3 bits (61), Expect = 7.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 114 MMTGHHHHHHHSGALP 129
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVP 16
Score = 27.3 bits (61), Expect = 7.7
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 193 MMTGHHHHHHHSGALP 208
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVP 16
>1vq8_B 50S ribosomal protein L3P; ribosome 50S, protein-protein complex,
RNA-RNA complex, PROT complex, peptidyl transferase
reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A
{Haloarcula marismortui} SCOP: b.43.3.2 PDB: 1vq4_B*
1vq5_B* 1vq6_B* 1vq7_B* 1s72_B* 1vq9_B* 1vqk_B* 1vql_B*
1vqm_B* 1vqn_B* 1vqo_B* 1vqp_B* 1yhq_B* 1yi2_B* 1yij_B*
1yit_B* 1yj9_B* 1yjn_B* 1yjw_B* 2otj_B* ...
Length = 338
Score = 27.7 bits (61), Expect = 7.8
Identities = 3/29 (10%), Positives = 5/29 (17%)
Query: 200 HHHHSGALPASHHHGATHHPVMPPGLQHP 228
H + G +P
Sbjct: 217 KRWGVQKRKGKHARQGWRRRIGNLGPWNP 245
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; 2.79A
{Sinorhizobium meliloti}
Length = 361
Score = 27.4 bits (61), Expect = 7.8
Identities = 13/77 (16%), Positives = 19/77 (24%), Gaps = 26/77 (33%)
Query: 197 HHHHHHHSGALPASHH------------------HGATHHPVMPPGLQHPDT------DT 232
HHHHHH SG + + H + L +
Sbjct: 2 HHHHHHSSGVDLGTENLYFQSMMDELRFAAVGLNHNHIYG--QVNCLLRAGARLAGFHEK 59
Query: 233 DPRELEAFAERFKQRRI 249
D F+ + R
Sbjct: 60 DDALAAEFSAVYADARR 76
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein;
2.50A {Mus musculus} SCOP: h.4.16.1
Length = 96
Score = 26.2 bits (57), Expect = 8.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 116 TGHHHHHHHSGALPASHH 133
+ HHHHHH SG +P H
Sbjct: 2 SSHHHHHHSSGLVPRGSH 19
Score = 26.2 bits (57), Expect = 8.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 195 TGHHHHHHHSGALPASHH 212
+ HHHHHH SG +P H
Sbjct: 2 SSHHHHHHSSGLVPRGSH 19
>2joi_A Hypothetical protein TA0095; structural genomics, COG4004
orthologous group, structural genomics consortium, SGC,
unknown function; NMR {Thermoplasma acidophilum}
Length = 118
Score = 26.5 bits (58), Expect = 8.0
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 114 MMTGHHHHHHHSG 126
M T HHHHHH SG
Sbjct: 1 MGTSHHHHHHSSG 13
Score = 26.5 bits (58), Expect = 8.0
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 193 MMTGHHHHHHHSG 205
M T HHHHHH SG
Sbjct: 1 MGTSHHHHHHSSG 13
>1v8p_A Hypothetical protein PAE2754; PIN-domain, tetramer, structural
genomics, unknown function; 2.52A {Pyrobaculum
aerophilum} SCOP: c.120.1.1 PDB: 1v8o_A
Length = 158
Score = 27.0 bits (59), Expect = 8.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 115 MTGHHHHHHHSGALPAS 131
M+ +HHHHHH +P +
Sbjct: 1 MSYYHHHHHHDYDIPTT 17
Score = 27.0 bits (59), Expect = 8.0
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 194 MTGHHHHHHHSGALPAS 210
M+ +HHHHHH +P +
Sbjct: 1 MSYYHHHHHHDYDIPTT 17
>2yhg_A SDE_182CT, cellulose-binding protein; hydrolase, glycoside
hydrolase; HET: BTB; 1.08A {Saccharophagus degradans}
Length = 437
Score = 27.4 bits (60), Expect = 8.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMARGEG 26
>3r3i_A UTP--glucose-1-phosphate uridylyltransferase; rossmann fold, beta
barrel, nucleotidyltransferase; 3.57A {Homo sapiens}
PDB: 3r2w_A
Length = 528
Score = 27.4 bits (60), Expect = 8.3
Identities = 21/108 (19%), Positives = 29/108 (26%), Gaps = 13/108 (12%)
Query: 194 MTGHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRELEAFAERFKQRRIKLGV 253
M HHHHHHS L H M +Q F E +Q
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH-------MSRFVQDLSKAMSQDGASQFQEVIRQ------E 47
Query: 254 TQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAW 301
+ V K L + + T + + + K W
Sbjct: 48 LELSVKKELEKILTTASSHEFEHTKKDLDGFRKLFHRFLQEKGPSVDW 95
>3c1y_A DNA integrity scanning protein DISA; DNA damage, DNA repair,
DNA-binding, DNA binding protein; HET: DNA 2BA; 2.10A
{Thermotoga maritima} PDB: 3c1z_A* 3c21_A* 3c23_A*
Length = 377
Score = 27.5 bits (61), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 114 MMTGHHHHHHHSGALP 129
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVP 16
Score = 27.5 bits (61), Expect = 8.3
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 193 MMTGHHHHHHHSGALP 208
M + HHHHHH SG +P
Sbjct: 1 MGSSHHHHHHSSGLVP 16
>4e0t_A Cyclic dipeptide N-prenyltransferase; PT-fold,
C(3)B-prenyltransferase; 2.25A {Aspergillus fumigatus}
PDB: 4e0u_A*
Length = 428
Score = 27.4 bits (60), Expect = 8.4
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 20/77 (25%)
Query: 118 HHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMSDPTPNP 177
HHHHHH SG +P H P +++ ++ P+
Sbjct: 1 HHHHHHSSGLVPRGSHQSQAPI------------PKDIAYHTLTKAL--------LFPDI 40
Query: 178 HQLHSSSMYGPSMNSMM 194
Q P + M+
Sbjct: 41 DQYQHWHHVAPMLAKML 57
>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine
transcarbamoylase, hydrolase; 2.50A {Mycoplasma
penetrans} PDB: 4anf_A
Length = 365
Score = 27.6 bits (62), Expect = 8.4
Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 22/82 (26%)
Query: 196 GHHHHHHHSGALPASHHHGATH----HPVMPPGLQHPD----TDTDPRELEA---FAERF 244
GHHHHHHH HHH + H MP L+ + E++ +
Sbjct: 2 GHHHHHHH-------HHHSSGHIDDDDKHMPVNLKGRSLDSLLNFTTEEVQHLIDLSIDL 54
Query: 245 KQRRIKLGVTQAD---VGKALA 263
K+ + G+ + VGK +A
Sbjct: 55 KKAK-YQGLHINNRPLVGKNIA 75
>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus}
SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B
Length = 115
Score = 26.2 bits (57), Expect = 8.4
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPS 139
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMATVNG 26
>3rdo_A Streptavidin; improved desthiobiotin binding, opene
destabilization, biotin binding protein; HET: BTN; 1.40A
{Streptomyces avidinii} PDB: 3rdm_A* 3rdq_A* 3rds_A*
3rdu_A* 3rdx_A 3re6_A 3re5_A
Length = 153
Score = 26.7 bits (58), Expect = 8.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 115 MTGHHHHHHHSGAL 128
M+G HHHHHHS +
Sbjct: 1 MSGSHHHHHHSSGI 14
Score = 26.7 bits (58), Expect = 8.4
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 194 MTGHHHHHHHSGAL 207
M+G HHHHHHS +
Sbjct: 1 MSGSHHHHHHSSGI 14
>2nt8_A Cobalamin adenosyltransferase; ATP binding; HET: ATP; 1.68A
{Lactobacillus reuteri}
Length = 223
Score = 27.2 bits (61), Expect = 8.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.2 bits (61), Expect = 8.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>2wmf_A Fucolectin-related protein; hydrolase, glycoside hydrolase, blood
group antigen, fucose utilization; 1.50A {Streptococcus
pneumoniae} PDB: 2wmh_A* 2wmg_A*
Length = 581
Score = 27.5 bits (60), Expect = 8.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 193 MMTGHHHHHHHSGALPASHHHGA 215
M + HHHHHH SG +P H A
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMAA 23
>3mx1_A ECO29KIR; type II restriction endonuclease, GIY-YIG endonuclease,
HYDR; 2.30A {Escherichia coli} PDB: 3mx4_A* 3nic_A*
Length = 235
Score = 27.1 bits (59), Expect = 8.7
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 193 MMTGHHHHHHHSGALPASHHHG 214
M + HHHHHH SG +P G
Sbjct: 1 MASSHHHHHHSSGLVPRGSSMG 22
>2asy_A Protein YDHR precursor; dimeric APHA+beta barrel, homodimer,
structural genomics, ontario centre for structural
proteomics, OCSP; NMR {Escherichia coli} SCOP: d.58.4.12
Length = 123
Score = 26.5 bits (58), Expect = 8.7
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEM 156
M T HHHHHH SG + + + LL + +G G M
Sbjct: 1 MGTSHHHHHHSSGR--ENLYFQGHMATLLQLHFAFNGPFGDAM 41
>3dzy_D Peroxisome proliferator-activated receptor gamma; DNA-binding,
HOST-virus interaction, metal-binding, nucleus,
receptor, transcription, transcription regulation,
zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo
sapiens} PDB: 3dzu_D* 3e00_D* 2env_A
Length = 419
Score = 27.3 bits (60), Expect = 8.8
Identities = 9/41 (21%), Positives = 10/41 (24%)
Query: 196 GHHHHHHHSGALPASHHHGATHHPVMPPGLQHPDTDTDPRE 236
HHHHHH P + P E
Sbjct: 2 AHHHHHHVDDDDKMYQSAIKVEPASPPYYSEKTQLYNKPHE 42
>2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural
genomics, structural genomics consortium, SGC, unknown
function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB:
2aqw_A
Length = 352
Score = 27.5 bits (60), Expect = 8.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.5 bits (60), Expect = 8.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3vdg_A Probable glucarate dehydratase; enolase, magnesium binding site,
lyase; 1.90A {Mycobacterium smegmatis str} PDB: 3vfc_A*
Length = 445
Score = 27.4 bits (61), Expect = 9.0
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 118 HHHHHHHSGALPASHHHVATPSLLLFPQMSHHGM 151
HHHHHH SG + + L F M+H+ +
Sbjct: 2 HHHHHHSSGVDLGTEN-------LYFQSMAHNRI 28
>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer,
peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP:
c.47.1.10
Length = 220
Score = 27.2 bits (61), Expect = 9.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 114 MMTGHHHHHHHSGALPASHHHVATPSLL 141
M + HHHHHH SG +P H + P+
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMLEDPAPA 28
>3sam_A 62 kDa protein, rifampicin resistance protein; double-barrel,
jelly-roll, scaffolding protein, structural P
rifampicin-resistance protein; 2.55A {Vaccinia virus}
PDB: 3saq_A 2ygc_A* 2ygb_A
Length = 576
Score = 27.4 bits (60), Expect = 9.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 115 MTGHHHHHHHSGALPASHH 133
M+ +HHHHHH +P + +
Sbjct: 1 MSYYHHHHHHDYDIPTTEN 19
Score = 27.4 bits (60), Expect = 9.2
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 194 MTGHHHHHHHSGALPASHH 212
M+ +HHHHHH +P + +
Sbjct: 1 MSYYHHHHHHDYDIPTTEN 19
>2aby_A Hypothetical protein TA0743; helix-turn-helix, unknown function;
NMR {Thermoplasma acidophilum}
Length = 146
Score = 26.7 bits (58), Expect = 9.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 114 MMTGHHHHHHHSG 126
M T HHHHHH SG
Sbjct: 1 MGTSHHHHHHSSG 13
Score = 26.7 bits (58), Expect = 9.2
Identities = 10/13 (76%), Positives = 10/13 (76%)
Query: 193 MMTGHHHHHHHSG 205
M T HHHHHH SG
Sbjct: 1 MGTSHHHHHHSSG 13
>3mlg_A Putative uncharacterized protein, linker, putativ uncharacterized
protein; knot, designed protein, fusion protein, chimera
protein; 2.29A {Helicobacter pylori}
Length = 189
Score = 26.9 bits (59), Expect = 9.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 100 QLHSSSMYGPSMNSMMTGHHHHHHH 124
+ + + SM ++++G HHHHH
Sbjct: 164 ESRKTDIVIQSMANILSGLEHHHHH 188
Score = 26.9 bits (59), Expect = 9.3
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 179 QLHSSSMYGPSMNSMMTGHHHHHHH 203
+ + + SM ++++G HHHHH
Sbjct: 164 ESRKTDIVIQSMANILSGLEHHHHH 188
>3fuy_A HFX_CASS1, putative integron gene cassette protein; integron
cassette protein, mobIle metagenome, structural
genomics, PSI-2; 2.00A {Uncultured bacterium}
Length = 179
Score = 27.0 bits (59), Expect = 9.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 114 MMTGHHHHHHHSG 126
M + HHHHHH SG
Sbjct: 1 MGSSHHHHHHSSG 13
Score = 27.0 bits (59), Expect = 9.4
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 193 MMTGHHHHHHHSG 205
M + HHHHHH SG
Sbjct: 1 MGSSHHHHHHSSG 13
>1e1h_A BONT/A LC, botulinum neurotoxin type A light chain;
Zn-endopeptidase, complex, substrate bound, inhibitor
bound, hydrolase; 1.80A {Clostridium botulinum} SCOP:
d.92.1.7
Length = 287
Score = 27.1 bits (59), Expect = 9.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 118 HHHHHHHSGALP 129
HHHHHH SG +P
Sbjct: 2 HHHHHHSSGLVP 13
Score = 27.1 bits (59), Expect = 9.4
Identities = 9/12 (75%), Positives = 10/12 (83%)
Query: 197 HHHHHHHSGALP 208
HHHHHH SG +P
Sbjct: 2 HHHHHHSSGLVP 13
>2wh6_A Early antigen protein R; mitochondrion, early protein,
transmembrane, viral protein,; 1.50A {Human herpesvirus
4} PDB: 2v6q_A 2xpx_A 1q59_A
Length = 173
Score = 26.7 bits (58), Expect = 9.5
Identities = 12/40 (30%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGL 154
M HHHHHH + S + L HG L
Sbjct: 1 MGSHHHHHHSQDPMAYSTREILLA--LCIRDSRVHGNGTL 38
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR
like protein, struc genomics, transcription; 1.60A
{Staphylococcus aureus}
Length = 119
Score = 26.3 bits (58), Expect = 9.6
Identities = 27/103 (26%), Positives = 42/103 (40%), Gaps = 24/103 (23%)
Query: 193 MMTGHHHHHHHSGALP-----ASHHHGATHHPVMPPGLQHPDTD------TD---PRELE 238
M + HHHHHH SG +P GA + L + + D E++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSMQIEKLRGAALDELFDAILTLENREECYQFFDDLCTVNEIQ 60
Query: 239 AFAERFK-QRRIKLGVTQADVGKALANLKLPGVGALSQSTICR 280
+ ++R + + IK G T A + + GA S +TI R
Sbjct: 61 SLSQRLQVAKMIKQGYTYATIEQES--------GA-STATISR 94
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics,
northeast structural genomics consortium, NESG, protein
structure initiative; NMR {Pseudomonas aeruginosa} SCOP:
b.3.7.1
Length = 170
Score = 26.8 bits (58), Expect = 9.7
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 195 TGHHHHHHHSGALPASHHHGATHHPVMP 222
+ HHHHHH SG +P H + + +
Sbjct: 2 SSHHHHHHSSGLVPRGSHMASNPNDLPD 29
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 27.3 bits (60), Expect = 9.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 114 MMTGHHHHHHHSGALPASHH 133
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
Score = 27.3 bits (60), Expect = 9.8
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 193 MMTGHHHHHHHSGALPASHH 212
M + HHHHHH SG +P H
Sbjct: 1 MGSSHHHHHHSSGLVPRGSH 20
>3s6d_A Putative triosephosphate isomerase; seattle structural genomics
center for infectious disease, S pathogenic fungus,
eukaryote; 2.20A {Coccidioides immitis RS}
Length = 310
Score = 27.3 bits (61), Expect = 9.9
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 8/33 (24%)
Query: 198 HHHHHHSGALPA--------SHHHGATHHPVMP 222
HHHHHH G L A + P +P
Sbjct: 3 HHHHHHMGTLEAQTQGPGSMASALAGPRFPPLP 35
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif,
de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A
4dba_A
Length = 210
Score = 26.8 bits (60), Expect = 9.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 115 MTGHHHHHHHSGALPA 130
M G HHHHHH LP
Sbjct: 1 MRGSHHHHHHGSELPQ 16
Score = 26.8 bits (60), Expect = 9.9
Identities = 10/16 (62%), Positives = 10/16 (62%)
Query: 194 MTGHHHHHHHSGALPA 209
M G HHHHHH LP
Sbjct: 1 MRGSHHHHHHGSELPQ 16
>3lbe_A Putative uncharacterized protein SMU.793; hypothetical protein,
unknown function; HET: COA; 1.70A {Streptococcus mutans}
PDB: 3lbb_A*
Length = 163
Score = 26.8 bits (59), Expect = 9.9
Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 13/57 (22%)
Query: 115 MTGHHHHHHHSGALPASHHHVATPSLLLFPQMSHHGMDGLEMLDSISSSMTTLTPMS 171
M HHHHHHS L H+A M G + + S S L +
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMA-------------SMTGGQQMGRGSMSDNHLHEIR 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.128 0.389
Gapped
Lambda K H
0.267 0.0581 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,634,757
Number of extensions: 428488
Number of successful extensions: 14156
Number of sequences better than 10.0: 1
Number of HSP's gapped: 13010
Number of HSP's successfully gapped: 1053
Length of query: 391
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 296
Effective length of database: 4,049,298
Effective search space: 1198592208
Effective search space used: 1198592208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)