Query psy17899
Match_columns 145
No_of_seqs 224 out of 642
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 16:58:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17899.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17899hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1p_A POU domain, class 5, tr 100.0 2.9E-56 1E-60 339.4 6.4 132 8-145 18-149 (155)
2 1au7_A Protein PIT-1, GHF-1; c 100.0 5.9E-55 2E-59 329.5 5.7 130 8-145 11-140 (146)
3 2xsd_C POU domain, class 3, tr 100.0 3.1E-54 1E-58 331.4 5.8 132 8-145 21-152 (164)
4 3d1n_I POU domain, class 6, tr 100.0 1.6E-53 5.4E-58 322.4 6.6 135 8-145 12-146 (151)
5 1e3o_C Octamer-binding transcr 100.0 6.4E-51 2.2E-55 311.1 6.9 135 8-145 15-154 (160)
6 1ic8_A Hepatocyte nuclear fact 99.9 2.1E-24 7.3E-29 169.7 1.7 126 9-145 35-189 (194)
7 1wh5_A ZF-HD homeobox family p 99.8 1E-20 3.5E-25 129.3 5.0 56 90-145 15-74 (80)
8 2h8r_A Hepatocyte nuclear fact 99.8 1.4E-20 4.9E-25 150.5 6.5 125 10-145 37-216 (221)
9 2vi6_A Homeobox protein nanog; 99.8 2.4E-21 8.3E-26 125.7 0.9 56 90-145 1-56 (62)
10 1wi3_A DNA-binding protein SAT 99.8 4.9E-21 1.7E-25 128.2 2.3 55 90-144 5-60 (71)
11 2cra_A Homeobox protein HOX-B1 99.8 5.2E-21 1.8E-25 127.0 2.3 56 90-145 5-60 (70)
12 1wh7_A ZF-HD homeobox family p 99.8 2.1E-20 7E-25 128.1 5.2 56 89-145 14-74 (80)
13 2hdd_A Protein (engrailed home 99.8 3.9E-21 1.3E-25 124.4 1.0 55 91-145 2-56 (61)
14 2h1k_A IPF-1, pancreatic and d 99.8 5.2E-21 1.8E-25 124.6 1.3 55 91-145 2-56 (63)
15 1ig7_A Homeotic protein MSX-1; 99.8 6.8E-21 2.3E-25 121.8 1.8 53 93-145 1-53 (58)
16 2da2_A Alpha-fetoprotein enhan 99.8 9.7E-21 3.3E-25 125.4 2.4 56 90-145 5-60 (70)
17 2dmt_A Homeobox protein BARH-l 99.8 1.8E-20 6.1E-25 127.4 3.5 57 89-145 14-70 (80)
18 2dmu_A Homeobox protein goosec 99.8 9.9E-21 3.4E-25 125.5 2.1 56 90-145 5-60 (70)
19 1bw5_A ISL-1HD, insulin gene e 99.8 8.2E-21 2.8E-25 124.6 1.6 55 91-145 2-56 (66)
20 2djn_A Homeobox protein DLX-5; 99.8 1.3E-20 4.5E-25 125.0 2.5 56 90-145 5-60 (70)
21 2da3_A Alpha-fetoprotein enhan 99.8 1.1E-20 3.8E-25 127.8 2.1 57 89-145 14-70 (80)
22 3rkq_A Homeobox protein NKX-2. 99.8 1.1E-20 3.9E-25 120.2 1.8 54 92-145 2-55 (58)
23 2da1_A Alpha-fetoprotein enhan 99.8 7.5E-21 2.6E-25 125.9 1.0 56 90-145 5-60 (70)
24 2kt0_A Nanog, homeobox protein 99.8 2.8E-20 9.6E-25 127.1 3.7 57 89-145 19-75 (84)
25 2l7z_A Homeobox protein HOX-A1 99.8 2.1E-20 7.3E-25 125.1 2.8 56 90-145 5-60 (73)
26 2dms_A Homeobox protein OTX2; 99.8 2.5E-20 8.5E-25 126.6 3.0 56 90-145 5-60 (80)
27 1akh_A Protein (mating-type pr 99.8 8.2E-21 2.8E-25 122.5 0.6 55 91-145 4-58 (61)
28 2cue_A Paired box protein PAX6 99.8 2.1E-20 7.2E-25 127.1 2.6 56 90-145 5-60 (80)
29 1yz8_P Pituitary homeobox 2; D 99.8 5.2E-21 1.8E-25 126.3 -0.4 56 90-145 1-56 (68)
30 1jgg_A Segmentation protein EV 99.8 1.5E-20 5.2E-25 121.1 1.3 53 93-145 2-54 (60)
31 1puf_A HOX-1.7, homeobox prote 99.8 3.5E-20 1.2E-24 125.1 3.0 57 89-145 10-66 (77)
32 1nk2_P Homeobox protein VND; h 99.8 2.7E-20 9.2E-25 125.7 2.3 56 90-145 7-62 (77)
33 2dmq_A LIM/homeobox protein LH 99.8 2.8E-20 9.5E-25 126.1 2.3 56 90-145 5-60 (80)
34 2e1o_A Homeobox protein PRH; D 99.8 3.3E-20 1.1E-24 123.1 2.3 56 90-145 5-60 (70)
35 1zq3_P PRD-4, homeotic bicoid 99.8 2.9E-20 9.8E-25 122.9 1.8 54 92-145 2-55 (68)
36 1ahd_P Antennapedia protein mu 99.8 1.5E-20 5.2E-25 124.3 0.4 54 92-145 2-55 (68)
37 2d5v_A Hepatocyte nuclear fact 99.8 2.1E-20 7.3E-25 142.0 1.1 108 38-145 34-150 (164)
38 1ftt_A TTF-1 HD, thyroid trans 99.8 2.7E-20 9.2E-25 123.0 1.3 54 92-145 2-55 (68)
39 1fjl_A Paired protein; DNA-bin 99.8 3.2E-20 1.1E-24 126.3 1.7 57 89-145 15-71 (81)
40 2k40_A Homeobox expressed in E 99.8 4E-20 1.4E-24 121.6 1.7 54 92-145 1-54 (67)
41 2da4_A Hypothetical protein DK 99.8 2.1E-20 7.2E-25 127.0 -0.0 56 90-145 6-65 (80)
42 3a01_A Homeodomain-containing 99.8 1.1E-19 3.7E-24 127.2 3.3 57 89-145 14-70 (93)
43 2m0c_A Homeobox protein arista 99.8 8.1E-20 2.8E-24 122.0 2.4 57 89-145 6-62 (75)
44 1b8i_A Ultrabithorax, protein 99.8 4.6E-20 1.6E-24 125.9 1.0 57 89-145 17-73 (81)
45 2r5y_A Homeotic protein sex co 99.8 7.8E-20 2.7E-24 126.3 1.6 57 89-145 25-81 (88)
46 1du6_A PBX1, homeobox protein 99.7 2.6E-19 8.8E-24 116.6 2.5 55 91-145 2-59 (64)
47 1b72_A Protein (homeobox prote 99.7 2E-19 7E-24 126.3 1.4 56 90-145 32-87 (97)
48 3a02_A Homeobox protein arista 99.7 1.7E-19 5.9E-24 116.2 0.7 51 95-145 2-52 (60)
49 1uhs_A HOP, homeodomain only p 99.7 3.4E-19 1.2E-23 118.7 1.6 53 93-145 2-55 (72)
50 2hi3_A Homeodomain-only protei 99.7 3.5E-19 1.2E-23 119.1 1.4 53 93-145 3-56 (73)
51 1x2n_A Homeobox protein pknox1 99.7 5.8E-19 2E-23 117.8 2.3 56 90-145 5-63 (73)
52 2ecc_A Homeobox and leucine zi 99.7 5.5E-19 1.9E-23 120.3 2.0 52 94-145 5-56 (76)
53 1puf_B PRE-B-cell leukemia tra 99.7 5.2E-19 1.8E-23 118.0 1.8 54 92-145 1-57 (73)
54 3a03_A T-cell leukemia homeobo 99.7 3.3E-19 1.1E-23 113.6 0.6 49 97-145 2-50 (56)
55 2da5_A Zinc fingers and homeob 99.7 1.5E-18 5.1E-23 116.8 3.3 52 94-145 9-60 (75)
56 2ly9_A Zinc fingers and homeob 99.7 7.2E-19 2.5E-23 117.5 1.6 55 91-145 5-59 (74)
57 3nar_A ZHX1, zinc fingers and 99.7 7.3E-19 2.5E-23 123.4 1.3 57 89-145 22-78 (96)
58 2cuf_A FLJ21616 protein; homeo 99.7 9.7E-19 3.3E-23 122.4 1.3 56 90-145 5-75 (95)
59 1mnm_C Protein (MAT alpha-2 tr 99.7 1.3E-18 4.6E-23 119.8 1.5 56 90-145 25-83 (87)
60 2dn0_A Zinc fingers and homeob 99.7 1.4E-18 4.9E-23 116.9 1.3 54 92-145 8-61 (76)
61 2da7_A Zinc finger homeobox pr 99.7 8.5E-19 2.9E-23 117.6 0.2 45 101-145 14-58 (71)
62 2da6_A Hepatocyte nuclear fact 99.7 2.4E-18 8.1E-23 123.1 2.3 57 89-145 3-80 (102)
63 1k61_A Mating-type protein alp 99.7 1.6E-18 5.4E-23 111.5 1.2 51 95-145 1-54 (60)
64 1b72_B Protein (PBX1); homeodo 99.7 1.8E-18 6E-23 118.8 1.5 54 92-145 1-57 (87)
65 2dmn_A Homeobox protein TGIF2L 99.7 2.9E-18 9.8E-23 117.6 2.4 56 90-145 5-63 (83)
66 1lfb_A Liver transcription fac 99.7 3.2E-18 1.1E-22 121.5 1.2 56 90-145 7-83 (99)
67 1le8_B Mating-type protein alp 99.7 4.3E-18 1.5E-22 116.5 1.2 54 92-145 2-58 (83)
68 2e19_A Transcription factor 8; 99.7 7.2E-18 2.5E-22 110.8 1.9 50 96-145 7-56 (64)
69 2cqx_A LAG1 longevity assuranc 99.7 4.3E-18 1.5E-22 114.1 -0.3 53 93-145 9-62 (72)
70 3nau_A Zinc fingers and homeob 99.6 1.6E-17 5.4E-22 110.3 0.1 46 100-145 12-57 (66)
71 2ecb_A Zinc fingers and homeob 99.6 5.1E-17 1.7E-21 113.5 1.6 48 98-145 17-64 (89)
72 2dmp_A Zinc fingers and homeob 99.6 4.5E-17 1.5E-21 113.1 1.2 47 99-145 20-66 (89)
73 2l9r_A Homeobox protein NKX-3. 99.6 4.8E-17 1.7E-21 108.6 1.0 48 98-145 10-57 (69)
74 1x2m_A LAG1 longevity assuranc 99.6 1.9E-16 6.6E-21 104.5 0.2 44 102-145 10-54 (64)
75 3k2a_A Homeobox protein MEIS2; 99.5 1.1E-15 3.8E-20 100.9 0.7 48 98-145 4-54 (67)
76 1mh3_A Maltose binding-A1 home 99.3 2.5E-13 8.4E-18 112.5 1.0 54 92-145 365-418 (421)
77 2lk2_A Homeobox protein TGIF1; 99.3 4E-13 1.4E-17 93.8 0.2 48 98-145 11-61 (89)
78 4ghj_A Probable transcriptiona 96.4 0.003 1E-07 43.9 4.1 38 9-55 41-78 (101)
79 3fmy_A HTH-type transcriptiona 96.1 0.0033 1.1E-07 40.3 2.7 35 7-50 14-48 (73)
80 4ich_A Transcriptional regulat 96.1 0.00041 1.4E-08 55.1 -2.1 123 10-143 36-164 (311)
81 3qq6_A HTH-type transcriptiona 96.0 0.0065 2.2E-07 39.4 3.8 50 6-64 12-64 (78)
82 3eus_A DNA-binding protein; st 95.9 0.0076 2.6E-07 39.7 3.9 42 9-59 19-62 (86)
83 3kz3_A Repressor protein CI; f 95.8 0.0052 1.8E-07 39.6 2.6 34 9-51 17-50 (80)
84 3s8q_A R-M controller protein; 95.6 0.014 4.9E-07 37.4 4.2 47 9-64 16-64 (82)
85 2wiu_B HTH-type transcriptiona 95.6 0.014 4.7E-07 37.7 4.0 42 9-59 17-60 (88)
86 2ef8_A C.ECOT38IS, putative tr 95.4 0.063 2.1E-06 34.1 6.8 41 9-58 15-57 (84)
87 3o9x_A Uncharacterized HTH-typ 95.4 0.0083 2.8E-07 42.4 2.6 35 8-51 75-109 (133)
88 2b5a_A C.BCLI; helix-turn-heli 95.4 0.02 6.8E-07 35.9 4.2 46 9-63 15-62 (77)
89 2o38_A Hypothetical protein; a 95.3 0.018 6E-07 40.9 4.1 42 9-59 45-89 (120)
90 1zug_A Phage 434 CRO protein; 95.3 0.013 4.5E-07 36.1 3.0 34 9-51 8-41 (71)
91 3f6w_A XRE-family like protein 95.2 0.029 9.9E-07 35.9 4.6 47 9-64 19-67 (83)
92 2l49_A C protein; P2 bacteriop 95.2 0.031 1.1E-06 36.9 4.9 44 7-59 7-52 (99)
93 2k9q_A Uncharacterized protein 95.0 0.015 5.1E-07 37.0 2.8 47 8-63 6-54 (77)
94 1adr_A P22 C2 repressor; trans 95.0 0.028 9.7E-07 35.0 4.0 46 9-63 10-57 (76)
95 1lmb_3 Protein (lambda repress 95.0 0.033 1.1E-06 36.3 4.5 45 10-63 23-69 (92)
96 3g5g_A Regulatory protein; tra 95.0 0.028 9.5E-07 38.2 4.2 47 9-64 33-81 (99)
97 2a6c_A Helix-turn-helix motif; 94.9 0.031 1.1E-06 36.3 4.2 33 9-50 23-55 (83)
98 1y7y_A C.AHDI; helix-turn-heli 94.9 0.033 1.1E-06 34.5 4.2 33 9-50 18-50 (74)
99 3b7h_A Prophage LP1 protein 11 94.9 0.042 1.5E-06 34.4 4.6 46 9-63 12-60 (78)
100 3bd1_A CRO protein; transcript 94.8 0.019 6.3E-07 36.9 2.9 35 6-50 1-35 (79)
101 1r69_A Repressor protein CI; g 94.8 0.022 7.4E-07 34.9 3.0 34 9-51 6-39 (69)
102 3omt_A Uncharacterized protein 94.7 0.043 1.5E-06 34.4 4.4 43 8-59 12-56 (73)
103 2r1j_L Repressor protein C2; p 94.7 0.021 7.3E-07 34.7 2.8 33 9-50 10-42 (68)
104 1x57_A Endothelial differentia 94.7 0.051 1.7E-06 35.6 4.7 33 9-50 18-50 (91)
105 2xi8_A Putative transcription 94.6 0.047 1.6E-06 32.9 4.3 42 9-59 6-49 (66)
106 3op9_A PLI0006 protein; struct 94.6 0.045 1.5E-06 37.3 4.5 47 9-64 14-62 (114)
107 2ppx_A AGR_C_3184P, uncharacte 94.6 0.04 1.4E-06 36.9 4.1 34 8-50 34-67 (99)
108 2ewt_A BLDD, putative DNA-bind 94.5 0.059 2E-06 33.2 4.6 44 9-59 13-58 (71)
109 3t76_A VANU, transcriptional r 94.4 0.059 2E-06 36.2 4.7 43 8-59 28-71 (88)
110 3mlf_A Transcriptional regulat 94.4 0.057 2E-06 37.3 4.6 42 9-59 28-71 (111)
111 2ys9_A Homeobox and leucine zi 94.4 0.012 4.2E-07 38.9 1.1 41 101-141 15-55 (70)
112 3bs3_A Putative DNA-binding pr 94.2 0.084 2.9E-06 32.8 4.8 34 8-50 14-47 (76)
113 3ivp_A Putative transposon-rel 94.1 0.032 1.1E-06 38.8 2.9 43 9-60 17-61 (126)
114 3vk0_A NHTF, transcriptional r 94.1 0.074 2.5E-06 36.5 4.8 47 9-64 26-74 (114)
115 2kpj_A SOS-response transcript 94.1 0.081 2.8E-06 34.9 4.8 47 9-64 14-62 (94)
116 2wus_R RODZ, putative uncharac 93.7 0.033 1.1E-06 39.0 2.4 34 9-51 12-45 (112)
117 3f52_A CLP gene regulator (CLG 93.6 0.039 1.3E-06 37.8 2.6 56 9-73 33-94 (117)
118 1b0n_A Protein (SINR protein); 93.5 0.11 3.9E-06 34.7 4.8 46 9-63 6-54 (111)
119 3cec_A Putative antidote prote 93.5 0.1 3.5E-06 34.9 4.5 46 9-63 23-70 (104)
120 2eby_A Putative HTH-type trans 93.2 0.12 4E-06 35.1 4.5 50 12-70 19-73 (113)
121 3kxa_A NGO0477 protein, putati 93.2 0.11 3.7E-06 37.6 4.5 53 9-70 73-130 (141)
122 3fym_A Putative uncharacterize 93.1 0.054 1.9E-06 38.6 2.7 34 9-51 8-41 (130)
123 3trb_A Virulence-associated pr 92.9 0.14 4.8E-06 35.2 4.5 43 13-64 23-67 (104)
124 3lfp_A CSP231I C protein; tran 92.8 0.14 4.7E-06 34.0 4.2 40 9-57 6-51 (98)
125 2jvl_A TRMBF1; coactivator, he 92.8 0.12 4.2E-06 35.3 4.1 33 9-50 39-73 (107)
126 2auw_A Hypothetical protein NE 92.7 0.07 2.4E-06 40.6 3.0 34 8-50 94-127 (170)
127 2bnm_A Epoxidase; oxidoreducta 91.9 0.16 5.5E-06 37.5 4.1 46 9-63 15-63 (198)
128 1jhg_A Trp operon repressor; c 91.6 0.21 7.2E-06 34.9 4.2 39 17-70 57-96 (101)
129 1y9q_A Transcriptional regulat 91.5 0.23 7.9E-06 36.6 4.6 47 9-64 16-64 (192)
130 2ict_A Antitoxin HIGA; helix-t 91.1 0.2 6.8E-06 32.8 3.5 52 10-70 14-71 (94)
131 2glo_A Brinker CG9653-PA; prot 89.4 0.11 3.8E-06 31.8 1.0 45 96-141 3-47 (59)
132 2awi_A PRGX; repressor, pherom 88.8 0.17 5.7E-06 40.9 1.9 47 8-64 7-55 (317)
133 3u3w_A Transcriptional activat 88.0 0.43 1.5E-05 36.4 3.7 47 8-64 9-57 (293)
134 2rgt_A Fusion of LIM/homeobox 87.4 0.01 3.5E-07 44.0 -5.7 29 91-119 135-163 (169)
135 1hlv_A CENP-B, major centromer 87.2 0.28 9.7E-06 33.9 2.1 47 94-143 3-49 (131)
136 3bdn_A Lambda repressor; repre 87.2 0.53 1.8E-05 35.6 3.8 44 9-61 22-67 (236)
137 1rzs_A Antirepressor, regulato 86.5 0.61 2.1E-05 28.8 3.1 27 12-47 5-31 (61)
138 2p5t_A Putative transcriptiona 86.3 0.14 4.7E-06 37.2 0.0 32 9-49 6-37 (158)
139 2l1p_A DNA-binding protein SAT 85.5 0.81 2.8E-05 31.0 3.5 49 12-71 27-77 (83)
140 1iuf_A Centromere ABP1 protein 84.8 0.74 2.5E-05 33.1 3.3 50 93-142 6-59 (144)
141 2qfc_A PLCR protein; TPR, HTH, 84.3 0.18 6E-06 38.7 -0.2 42 8-59 9-52 (293)
142 2ofy_A Putative XRE-family tra 84.0 1.3 4.4E-05 28.1 4.0 42 11-63 23-67 (86)
143 3pxp_A Helix-turn-helix domain 83.8 0.64 2.2E-05 37.8 2.9 47 9-64 11-66 (292)
144 1xwr_A Regulatory protein CII; 83.8 0.59 2E-05 32.3 2.3 39 13-63 20-58 (97)
145 2elh_A CG11849-PA, LD40883P; s 83.7 0.75 2.6E-05 30.1 2.7 45 92-141 16-60 (87)
146 1pdn_C Protein (PRD paired); p 82.7 8.1 0.00028 25.4 9.0 86 38-142 34-126 (128)
147 2pij_A Prophage PFL 6 CRO; tra 80.6 1.3 4.4E-05 26.8 2.8 28 10-47 7-34 (67)
148 1tc3_C Protein (TC3 transposas 80.5 0.87 3E-05 25.2 1.9 40 98-142 5-44 (51)
149 1nr3_A MTH0916, DNA-binding pr 79.9 0.19 6.5E-06 35.2 -1.5 25 16-49 4-28 (122)
150 1k78_A Paired box protein PAX5 78.8 14 0.00047 25.6 9.4 86 38-142 49-141 (149)
151 1zs4_A Regulatory protein CII; 78.2 1.8 6.1E-05 29.2 3.1 37 17-64 24-60 (83)
152 3qwg_A ESX-1 secretion-associa 78.0 2.5 8.6E-05 29.8 4.0 43 17-63 24-69 (123)
153 3r1f_A ESX-1 secretion-associa 78.0 1.5 5.2E-05 31.3 2.9 44 17-64 26-72 (135)
154 1neq_A DNA-binding protein NER 77.4 1.7 5.8E-05 27.9 2.7 27 13-48 18-44 (74)
155 2jn6_A Protein CGL2762, transp 75.1 1.7 5.8E-05 28.5 2.3 43 96-141 3-45 (97)
156 1jko_C HIN recombinase, DNA-in 70.9 1.5 5.1E-05 24.6 1.1 39 99-142 6-44 (52)
157 1iuf_A Centromere ABP1 protein 69.0 27 0.00093 24.6 8.1 38 91-128 73-113 (144)
158 1uxc_A FRUR (1-57), fructose r 68.4 3.1 0.0001 26.2 2.3 23 18-49 1-23 (65)
159 2o8x_A Probable RNA polymerase 67.4 1.9 6.3E-05 26.1 1.0 38 98-140 15-52 (70)
160 2rn7_A IS629 ORFA; helix, all 65.1 3.1 0.00011 27.7 1.9 46 96-141 4-52 (108)
161 4e1p_A Protein LSR2; anti-para 64.8 2.9 0.0001 26.6 1.6 22 49-70 34-55 (61)
162 1ku3_A Sigma factor SIGA; heli 61.4 2.8 9.6E-05 26.1 1.1 42 98-140 10-51 (73)
163 2l8n_A Transcriptional repress 61.4 12 0.00042 23.4 4.2 24 18-50 10-33 (67)
164 2p7v_B Sigma-70, RNA polymeras 60.9 2.4 8E-05 26.1 0.6 42 98-140 5-46 (68)
165 3v4g_A Arginine repressor; vib 60.5 5.4 0.00018 30.4 2.7 31 18-51 48-79 (180)
166 1p4w_A RCSB; solution structur 59.9 3.6 0.00012 27.8 1.5 40 96-141 32-71 (99)
167 2k27_A Paired box protein PAX- 59.4 8.5 0.00029 27.2 3.5 47 96-142 81-134 (159)
168 1fse_A GERE; helix-turn-helix 59.1 2.5 8.6E-05 25.8 0.5 40 96-141 9-48 (74)
169 3ej9_B Beta-subunit of trans-3 56.2 12 0.0004 24.4 3.4 32 100-141 12-43 (70)
170 1b4a_A Arginine repressor; hel 56.1 7.3 0.00025 28.5 2.7 31 17-51 19-50 (149)
171 4e1r_A Protein LSR2; anti-para 55.6 5.1 0.00017 27.2 1.6 22 49-70 59-80 (86)
172 3hug_A RNA polymerase sigma fa 54.7 5.8 0.0002 25.7 1.8 37 99-140 38-74 (92)
173 2w7n_A TRFB transcriptional re 53.6 7.3 0.00025 26.9 2.2 11 17-27 34-44 (101)
174 1zx4_A P1 PARB, plasmid partit 53.1 6.8 0.00023 30.0 2.2 24 15-47 22-45 (192)
175 1jhf_A LEXA repressor; LEXA SO 52.7 8.1 0.00028 28.4 2.5 27 13-48 19-48 (202)
176 1tty_A Sigma-A, RNA polymerase 52.0 4.9 0.00017 25.9 1.1 42 98-140 18-59 (87)
177 3c57_A Two component transcrip 51.7 6.5 0.00022 25.9 1.6 39 97-141 26-64 (95)
178 2x48_A CAG38821; archeal virus 50.4 3 0.0001 24.3 -0.2 39 98-141 13-53 (55)
179 3lap_A Arginine repressor; arg 49.3 10 0.00035 28.4 2.6 29 18-50 35-64 (170)
180 1x3u_A Transcriptional regulat 48.9 6.3 0.00022 24.3 1.2 36 99-140 17-52 (79)
181 1je8_A Nitrate/nitrite respons 47.1 4.6 0.00016 25.9 0.3 40 96-141 19-58 (82)
182 2fjr_A Repressor protein CI; g 44.2 13 0.00044 26.8 2.4 25 17-50 19-44 (189)
183 1u78_A TC3 transposase, transp 43.6 11 0.00038 25.4 1.9 41 97-142 5-45 (141)
184 3me5_A Cytosine-specific methy 43.2 15 0.00051 31.7 3.0 34 15-51 27-60 (482)
185 2jml_A DNA binding domain/tran 43.1 5 0.00017 25.7 -0.0 20 121-140 7-26 (81)
186 3mzy_A RNA polymerase sigma-H 43.0 9.8 0.00034 25.9 1.5 37 98-140 109-145 (164)
187 2k27_A Paired box protein PAX- 42.1 16 0.00054 25.7 2.6 41 97-142 24-64 (159)
188 1r71_A Transcriptional repress 41.5 20 0.00069 26.8 3.2 31 9-48 44-74 (178)
189 1hlv_A CENP-B, major centromer 39.8 81 0.0028 21.0 8.4 42 91-132 65-114 (131)
190 1s7o_A Hypothetical UPF0122 pr 38.2 10 0.00034 26.1 0.9 39 98-141 22-60 (113)
191 2kvr_A Ubiquitin carboxyl-term 37.9 18 0.00061 25.8 2.2 25 120-144 70-94 (130)
192 2q24_A Putative TETR family tr 37.4 8.9 0.00031 26.9 0.6 40 102-143 19-58 (194)
193 3i5g_B Myosin regulatory light 34.6 72 0.0025 22.0 5.1 39 95-133 6-49 (153)
194 1l0o_C Sigma factor; bergerat 34.5 8.3 0.00028 28.1 0.0 39 99-142 199-237 (243)
195 1or7_A Sigma-24, RNA polymeras 34.4 14 0.00047 26.2 1.2 37 99-140 141-177 (194)
196 1qgp_A Protein (double strande 34.2 3.9 0.00013 26.4 -1.7 38 100-137 12-49 (77)
197 1xsv_A Hypothetical UPF0122 pr 34.2 15 0.0005 25.1 1.2 39 98-141 25-63 (113)
198 3t72_q RNA polymerase sigma fa 33.6 18 0.00061 24.4 1.6 40 99-139 20-59 (99)
199 2jpc_A SSRB; DNA binding prote 32.7 5.5 0.00019 23.4 -1.0 33 103-141 3-35 (61)
200 1kvn_A SRP19; RNA binding prot 32.6 28 0.00096 24.0 2.5 29 114-142 29-62 (104)
201 2cw1_A SN4M; lambda CRO fold, 32.3 21 0.00071 22.4 1.6 20 19-47 15-34 (65)
202 1rp3_A RNA polymerase sigma fa 32.2 16 0.00055 26.5 1.3 37 99-140 188-224 (239)
203 2rnj_A Response regulator prot 32.0 19 0.00065 23.1 1.5 40 96-141 27-66 (91)
204 3ulq_B Transcriptional regulat 32.0 22 0.00077 23.2 1.8 41 93-139 24-64 (90)
205 1j9i_A GPNU1 DBD;, terminase s 30.7 13 0.00044 22.8 0.4 21 122-142 5-25 (68)
206 1fi6_A EH domain protein REPS1 30.3 21 0.00072 22.7 1.5 39 99-137 3-46 (92)
207 2qko_A Possible transcriptiona 30.2 17 0.00057 25.9 1.0 40 103-143 33-72 (215)
208 1ixs_A Holliday junction DNA h 29.7 27 0.00092 21.7 1.8 17 14-30 25-41 (62)
209 4fp9_B Mterf domain-containing 29.1 54 0.0019 26.8 4.1 41 15-59 55-98 (335)
210 1c07_A Protein (epidermal grow 28.6 24 0.00083 22.6 1.6 41 99-139 4-49 (95)
211 3gyk_A 27KDA outer membrane pr 27.4 41 0.0014 23.3 2.7 37 104-140 85-121 (175)
212 2oo9_A E3 ubiquitin-protein li 27.4 34 0.0011 20.5 1.8 18 14-31 12-29 (46)
213 1vz0_A PARB, chromosome partit 25.9 48 0.0016 25.4 3.1 30 11-49 128-157 (230)
214 2v57_A TETR family transcripti 25.8 11 0.00037 26.1 -0.6 37 104-143 20-56 (190)
215 3qwg_A ESX-1 secretion-associa 25.4 1.1E+02 0.0037 21.0 4.6 35 98-134 40-74 (123)
216 1lng_A SRP19, signal recogniti 25.2 47 0.0016 22.1 2.5 21 115-135 27-47 (87)
217 1qbj_A Protein (double-strande 24.8 10 0.00036 24.8 -0.9 32 107-138 15-46 (81)
218 3fia_A Intersectin-1; EH 1 dom 24.7 43 0.0015 23.5 2.4 44 96-139 24-72 (121)
219 3ov5_A VIRB7 (XAC2622), unchar 24.5 23 0.00079 23.8 0.8 13 59-71 15-27 (85)
220 2q0o_A Probable transcriptiona 24.4 21 0.00072 26.8 0.7 41 96-142 173-213 (236)
221 2qwt_A Transcriptional regulat 24.2 26 0.0009 24.6 1.2 39 103-143 18-56 (196)
222 3m20_A 4-oxalocrotonate tautom 23.6 84 0.0029 18.5 3.3 33 99-141 10-42 (62)
223 2ooa_A E3 ubiquitin-protein li 23.5 57 0.002 19.9 2.4 25 7-31 12-36 (52)
224 2d9s_A CBL E3 ubiquitin protei 23.1 41 0.0014 20.7 1.7 21 11-31 14-34 (53)
225 2juj_A E3 ubiquitin-protein li 22.6 47 0.0016 20.6 1.9 21 11-31 12-32 (56)
226 2lv7_A Calcium-binding protein 22.5 75 0.0026 20.6 3.2 48 93-140 24-78 (100)
227 2hin_A GP39, repressor protein 22.1 17 0.00059 23.2 -0.2 21 122-142 13-33 (71)
228 1dw9_A Cyanate lyase; cyanate 22.0 46 0.0016 24.6 2.1 35 106-141 42-76 (156)
229 2rae_A Transcriptional regulat 21.8 23 0.0008 24.7 0.5 42 102-144 21-62 (207)
230 3k2z_A LEXA repressor; winged 21.6 36 0.0012 25.0 1.5 39 98-138 2-43 (196)
231 2d1h_A ST1889, 109AA long hypo 21.4 47 0.0016 20.8 1.9 37 98-137 18-54 (109)
232 2wwb_B SEC61gamma, protein tra 21.3 44 0.0015 21.4 1.7 25 107-131 18-42 (68)
233 3jui_A Translation initiation 20.7 36 0.0012 25.3 1.4 48 23-73 124-177 (182)
234 2ao9_A Phage protein; structur 20.7 21 0.0007 26.4 -0.0 43 98-141 23-70 (155)
235 2jt1_A PEFI protein; solution 20.5 23 0.00077 22.9 0.1 32 104-137 10-42 (77)
236 2fd5_A Transcriptional regulat 20.2 53 0.0018 22.3 2.1 40 103-143 12-51 (180)
No 1
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=100.00 E-value=2.9e-56 Score=339.40 Aligned_cols=132 Identities=40% Similarity=0.572 Sum_probs=116.7
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCCChHHHhhhhHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVL 87 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~LS~knm~klkPlL~kWL~eae~~~~~~~~~~~~~~~~ 87 (145)
.||+|||+|||||+|||+|||.+| | ++||||||||||+|||||+|||||+|+|++||+|+|+.... ....+.+...
T Consensus 18 ~fk~~ri~lg~tq~~vg~al~~l~--G-~~~Sqtti~rfE~l~ls~~nm~kLkPlL~~Wl~eae~~~~~-~~~~~~~~~~ 93 (155)
T 3l1p_A 18 LLKQKRITLGYTQADVGLTLGVLF--G-KVFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNENL-QEISKSETLV 93 (155)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH--S-CCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTTCHHH-HHSSCC---C
T ss_pred HHHhhhheecccHHHHHHHHHhhc--C-cccccccccccccccCChhhHhhcchHHHHHhhhhhcccCc-cccccccccc
Confidence 699999999999999999999999 7 79999999999999999999999999999999999954221 1112222222
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 88 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 88 ~~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+++||+||+|+..|+..||.+|..|+||+..++.+||.++||++.+|+||||||||
T Consensus 94 --~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~ 149 (155)
T 3l1p_A 94 --QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQ 149 (155)
T ss_dssp --CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred --cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccc
Confidence 57788999999999999999999999999999999999999999999999999995
No 2
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=100.00 E-value=5.9e-55 Score=329.54 Aligned_cols=130 Identities=41% Similarity=0.594 Sum_probs=111.2
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCCChHHHhhhhHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVL 87 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~LS~knm~klkPlL~kWL~eae~~~~~~~~~~~~~~~~ 87 (145)
.||+|||+|||||+|||+|||.+| | ++||||||||||+|||||+|||||+|+|++||+|+|...... + +...
T Consensus 11 ~~k~~ri~lg~tQ~~vg~al~~l~--g-~~~Sqtti~rfe~l~ls~knm~kLkPlL~~wl~e~e~~~~~~----~-~~~~ 82 (146)
T 1au7_A 11 EFKVRRIKLGYTQTNVGEALAAVH--G-SEFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGALY----N-EKVG 82 (146)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHTT--S-SCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHCCC---------------
T ss_pred HHHHHHHhccCcHHhhhhhcchhc--c-CCCCcchHHHHhccCCChHHHHhcchHHHHHHHHhhcccCcc----C-cccC
Confidence 699999999999999999999999 7 699999999999999999999999999999999999653211 1 1222
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 88 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 88 ~~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
..+++||+||+|+..|+..||.+|..|+||+..++.+||..+||++.+|+||||||||
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~ 140 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQ 140 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhh
Confidence 3457788999999999999999999999999999999999999999999999999995
No 3
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=100.00 E-value=3.1e-54 Score=331.44 Aligned_cols=132 Identities=42% Similarity=0.648 Sum_probs=106.5
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCCChHHHhhhhHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVL 87 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~LS~knm~klkPlL~kWL~eae~~~~~~~~~~~~~~~~ 87 (145)
.||+|||+|||||+|||+|||.+| | ++||||||||||+||||++|||||+|+|++||+|+|...... .+.+.+.
T Consensus 21 ~fk~~ri~lg~tQ~~vg~alg~l~--g-~~~Sqtti~rFE~l~ls~kn~~klkPlL~~wl~eae~~~~~~---~~~~~~~ 94 (164)
T 2xsd_C 21 QFKQRRIKLGFTQADVGLALGTLY--G-NVFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGSP---TNLDKIA 94 (164)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH--S-CCCCHHHHHHHHTTCSBHHHHHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHHhhcCCccccccccccccc--C-CCcCcchhhhhhccCCCHHHHHHcchhHHHHHhhhccccCCC---ccccccc
Confidence 699999999999999999999999 7 689999999999999999999999999999999999653211 1122233
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 88 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 88 ~~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
...++||+||+|+..|+..||.+|..|+||+..++.+||.++||++.+|+||||||||
T Consensus 95 ~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~ 152 (164)
T 2xsd_C 95 AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQ 152 (164)
T ss_dssp -----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred ccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhH
Confidence 3567888999999999999999999999999999999999999999999999999995
No 4
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=100.00 E-value=1.6e-53 Score=322.45 Aligned_cols=135 Identities=33% Similarity=0.532 Sum_probs=119.3
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCCChHHHhhhhHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVL 87 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~LS~knm~klkPlL~kWL~eae~~~~~~~~~~~~~~~~ 87 (145)
.||+|||+|||||+|||+|||.+| | ++||||||||||+|+|||+|||+|+|+|++||+|+|....++..........
T Consensus 12 ~f~~~ri~lg~tQ~~vg~al~~l~--g-~~~Sqsti~rfe~l~ls~kn~~klkPll~~Wl~e~e~~~~~~~~~~~~~~~~ 88 (151)
T 3d1n_I 12 NFKIRRLSLGLTQTQVGQAMTATE--G-PAYSQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQEGQQNLMEFVGG 88 (151)
T ss_dssp HHHHHHHTTTCCHHHHHHHHSCSS--S-CCCCHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHHCS
T ss_pred HHHHHHhhcCCCcccHHHhhcccc--C-CCCCccccccccCCCCChhHHHHhchhHHHHHHHHHhccccCcccccccCCC
Confidence 699999999999999999999998 7 6999999999999999999999999999999999997654443211100112
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 88 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 88 ~~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
..+++||+||+|+..|+.+||.+|..||||+..++.+||.++||++.+|+||||||||
T Consensus 89 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~ 146 (151)
T 3d1n_I 89 EPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQ 146 (151)
T ss_dssp SCCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHh
Confidence 2357888999999999999999999999999999999999999999999999999995
No 5
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=100.00 E-value=6.4e-51 Score=311.14 Aligned_cols=135 Identities=38% Similarity=0.586 Sum_probs=109.7
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCCChHHHhhhhHHHHHHHHHHHHHhhcCCCCC-----C
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDP-----D 82 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~LS~knm~klkPlL~kWL~eae~~~~~~~~~~-----~ 82 (145)
.||++||+|||||+|||.++|.+| | +.|||+||||||+|||||||||||+|+|++||+|+|.........+ .
T Consensus 15 ~~k~~r~~lg~tQ~~vg~~lg~l~--g-~~~sq~ti~rfE~l~lS~knm~klkPlL~~WL~e~e~~~~~~~~~~s~~~~~ 91 (160)
T 1e3o_C 15 TFKQRRIKLGFTQGDVGLAMGKLY--G-NDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSSDSSLSSPSALN 91 (160)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH--S-CCCCHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHC----------------
T ss_pred HHHHHHHHcCCCHHHHHHhhcccc--C-CCcCccccccccccCCChHHHHhcchhHHHHHHhhhcccccCCCCCCCCCcC
Confidence 689999999999999999999999 7 6899999999999999999999999999999999996532211111 0
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 83 APSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 83 ~~~~~~~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.+......++||+||+|+..|+.+||.+|..|+||+..++..||..+||++.+|+||||||||
T Consensus 92 ~~~~~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~ 154 (160)
T 1e3o_C 92 SPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQ 154 (160)
T ss_dssp ------------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhh
Confidence 111222357889999999999999999999999999999999999999999999999999996
No 6
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.88 E-value=2.1e-24 Score=169.73 Aligned_cols=126 Identities=17% Similarity=0.210 Sum_probs=94.2
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCCChHHHhhhhHHHHHHHHHHHHH----hhcCCCCC---
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQ----AKNKRRDP--- 81 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~LS~knm~klkPlL~kWL~eae~~----~~~~~~~~--- 81 (145)
.+..++..|+||.+|+.++| .||+||||+++....+.++. ++.|..|+...... .......+
T Consensus 35 Ik~~l~~~gitQ~~lA~~~G---------iSqs~ISr~l~~~~~~~~~k--raaly~W~~~~~~~i~~~~~~~~~~~~~~ 103 (194)
T 1ic8_A 35 VKSYLQQHNIPQREVVDTTG---------LNQSHLSQHLNKGTPMKTQK--RAALYTWYVRKQREVAQQFTHAGQGGLIE 103 (194)
T ss_dssp HHHHHHHTTCCHHHHHHHHC---------CCHHHHHHHHHSBCCCCHHH--HHHHHHHHHHHTTTTHHHHCCC-------
T ss_pred HHHHHHHcCCCHHHHHHHhC---------CChHHHHHHHhcCccccccc--cccchhhHHHhhhhhhccccCCCCCCCCC
Confidence 35567788999999999983 68999999999887777665 57889999876431 11100000
Q ss_pred CCC-CCCCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcC---------------------CCCCccccc
Q psy17899 82 DAP-SVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLD---------------------LKKNVVRPI 139 (145)
Q Consensus 82 ~~~-~~~~~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~---------------------L~~~vVrVW 139 (145)
+.. ......++||.||.|+..|+.+||.+|..|+||+..++++||..++ |++.+|+||
T Consensus 104 ~~~~~~~~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~W 183 (194)
T 1ic8_A 104 EPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNW 183 (194)
T ss_dssp -------------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHH
T ss_pred CCcccccccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchh
Confidence 000 1112246788999999999999999999999999999999999999 999999999
Q ss_pred cCccCC
Q psy17899 140 NGHTRA 145 (145)
Q Consensus 140 FqNrRa 145 (145)
|||||+
T Consensus 184 FqNRR~ 189 (194)
T 1ic8_A 184 FANRRK 189 (194)
T ss_dssp HHHHHH
T ss_pred chhhhh
Confidence 999985
No 7
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=1e-20 Score=129.35 Aligned_cols=56 Identities=21% Similarity=0.290 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc----CCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAV----QPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~----np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.++||+||.|+..|+..||..|+. ++||+..++.+||..|||++.+|+|||||+||
T Consensus 15 ~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRa 74 (80)
T 1wh5_A 15 GIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKH 74 (80)
T ss_dssp CCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCc
Confidence 477889999999999999999999 99999999999999999999999999999997
No 8
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.81 E-value=1.4e-20 Score=150.46 Aligned_cols=125 Identities=18% Similarity=0.171 Sum_probs=89.1
Q ss_pred hhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCCChHHHhhhhHHHHHHHHHHHHHhh---c-------CCC
Q psy17899 10 YSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAK---N-------KRR 79 (145)
Q Consensus 10 ~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~LS~knm~klkPlL~kWL~eae~~~~---~-------~~~ 79 (145)
+..|+..|+||.+|+..+| .||++||++|+.. +....-|+ .-+-.|....-..-. + +..
T Consensus 37 k~~r~~~gltQ~evA~~tG---------ISqS~ISq~e~~g-~~~t~~k~-a~~y~Wy~~~~~e~~~~~~~~~~~~~~~~ 105 (221)
T 2h8r_A 37 KGYMQQHNIPQREVVDVTG---------LNQSHLSQHLNKG-TPMKTQKR-AALYTWYVRKQREILRQFNQTVQSSGNMT 105 (221)
T ss_dssp HHHHHHHTCCHHHHHHHHT---------CCHHHHHHHHTTC-CCCCHHHH-HHHHHHHHHHHHHHHHTTTTCC-------
T ss_pred HHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHhCC-CchhHHHH-HHHHHHHHHHhhhhhhccccccccccccc
Confidence 4457777999999999884 6799999999843 33344444 666677775422100 0 000
Q ss_pred C---------------------C---CCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcC-----
Q psy17899 80 D---------------------P---DAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLD----- 130 (145)
Q Consensus 80 ~---------------------~---~~~~~~~~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~----- 130 (145)
+ + +........++||.||.|++.|+.+||.+|..|+||+..++++||+.+|
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~ 185 (221)
T 2h8r_A 106 DKSSQDQLLFLFPEFSQQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECL 185 (221)
T ss_dssp ------------------------------------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhhhhhhhccccCCCCCcccccccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhc
Confidence 0 0 0000111246788999999999999999999999999999999999988
Q ss_pred ----------------CCCCccccccCccCC
Q psy17899 131 ----------------LKKNVVRPINGHTRA 145 (145)
Q Consensus 131 ----------------L~~~vVrVWFqNrRa 145 (145)
|++.+|+|||||||+
T Consensus 186 ~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~ 216 (221)
T 2h8r_A 186 QRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 216 (221)
T ss_dssp HTTCCSTTGGGGTTSCCCHHHHHHHHHHHHT
T ss_pred ccccccchhccccccccCHHHHHHHhHHhhh
Confidence 788999999999996
No 9
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.81 E-value=2.4e-21 Score=125.68 Aligned_cols=56 Identities=21% Similarity=0.263 Sum_probs=48.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
++++|+||.|+..|+.+||.+|..|+||+..++.+||..+||++.+|+|||||+||
T Consensus 1 g~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 56 (62)
T 2vi6_A 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRM 56 (62)
T ss_dssp -------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhc
Confidence 36788999999999999999999999999999999999999999999999999986
No 10
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=4.9e-21 Score=128.16 Aligned_cols=55 Identities=24% Similarity=0.320 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHhhcCCCCCccccccCccC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAV-QPRPSGEKIAAIAEKLDLKKNVVRPINGHTR 144 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~-np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrR 144 (145)
+.+||.||+|+.+|+.+|+.+|.. ++||+.++|..||.+|||++++|+|||||+|
T Consensus 5 ~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR 60 (71)
T 1wi3_A 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQR 60 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccce
Confidence 477899999999999999999999 9999999999999999999999999999998
No 11
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.81 E-value=5.2e-21 Score=126.97 Aligned_cols=56 Identities=18% Similarity=0.197 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+..||+||.|+..|+.+||.+|..|+||+..++..||..|||++.+|+|||||+||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~ 60 (70)
T 2cra_A 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRV 60 (70)
T ss_dssp CCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHH
Confidence 46788999999999999999999999999999999999999999999999999985
No 12
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.81 E-value=2.1e-20 Score=128.09 Aligned_cols=56 Identities=18% Similarity=0.283 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhc-----CCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 89 AGEKKRKRTSIAAPEKRSLEAYFAV-----QPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 89 ~~rkrR~RTs~s~~q~~~Le~~F~~-----np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
..++||+||.|+..|+..|| .|.. ++||+..++.+||.+|||++.+|+|||||+||
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~ 74 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKN 74 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCccccccccccc
Confidence 35778999999999999999 7999 99999999999999999999999999999997
No 13
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.80 E-value=3.9e-21 Score=124.35 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=49.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 91 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 91 rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.+||+||.|+..|+.+||.+|..|+||+..++..||..+||++.+|+|||||+||
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 56 (61)
T 2hdd_A 2 AEKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRA 56 (61)
T ss_dssp -----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcc
Confidence 3678999999999999999999999999999999999999999999999999985
No 14
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.80 E-value=5.2e-21 Score=124.59 Aligned_cols=55 Identities=22% Similarity=0.218 Sum_probs=51.1
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 91 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 91 rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.+||+||.|+..|+.+||..|..|+||+..++..||..+||++.+|+|||||+||
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 56 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRM 56 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhh
Confidence 5678999999999999999999999999999999999999999999999999985
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.80 E-value=6.8e-21 Score=121.78 Aligned_cols=53 Identities=23% Similarity=0.229 Sum_probs=51.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 93 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 93 rR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
||+||.|+..|+.+||..|..|+||+..++.+||..+||++.+|+|||||+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 53 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRA 53 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhh
Confidence 57899999999999999999999999999999999999999999999999985
No 16
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.80 E-value=9.7e-21 Score=125.39 Aligned_cols=56 Identities=18% Similarity=0.331 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+.+||+||.|+..|+.+||.+|..|+||+..++..||..|||++.+|+|||||+||
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 60 (70)
T 2da2_A 5 SSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQ 60 (70)
T ss_dssp CCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhH
Confidence 47788999999999999999999999999999999999999999999999999985
No 17
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-20 Score=127.44 Aligned_cols=57 Identities=26% Similarity=0.236 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 89 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 89 ~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
..++||+||.|+..|+.+||.+|..|+||+..++.+||..|||++.+|+||||||||
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~ 70 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRM 70 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHH
Confidence 356788999999999999999999999999999999999999999999999999986
No 18
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=9.9e-21 Score=125.48 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+..||+||.|+..|+.+||.+|..|+||+..++.+||.+|||++.+|+|||||+||
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 60 (70)
T 2dmu_A 5 SSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRA 60 (70)
T ss_dssp TSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccc
Confidence 46788999999999999999999999999999999999999999999999999985
No 19
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.80 E-value=8.2e-21 Score=124.58 Aligned_cols=55 Identities=24% Similarity=0.360 Sum_probs=53.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 91 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 91 rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+++|+||.|+..|+..||.+|..||||+..++..||..+||++.+|+|||||+||
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 56 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRC 56 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHH
Confidence 4678999999999999999999999999999999999999999999999999985
No 20
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-20 Score=125.00 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+..||+||.|+..|+.+||.+|..|+||+..++.+||..+||++.+|+|||||+||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 60 (70)
T 2djn_A 5 SSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRS 60 (70)
T ss_dssp CCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 46788999999999999999999999999999999999999999999999999985
No 21
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-20 Score=127.77 Aligned_cols=57 Identities=30% Similarity=0.383 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 89 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 89 ~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+.++||+||.|+..|+.+||.+|..|+||+..++.+||.+|||++.+|+|||||+||
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 70 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRA 70 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHH
Confidence 457888999999999999999999999999999999999999999999999999985
No 22
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.79 E-value=1.1e-20 Score=120.16 Aligned_cols=54 Identities=20% Similarity=0.198 Sum_probs=52.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 92 krR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+||.||.|+..|+..||..|..|+||+..++.+||.++||++.+|+|||||+||
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 55 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRY 55 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhc
Confidence 567899999999999999999999999999999999999999999999999985
No 23
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=7.5e-21 Score=125.93 Aligned_cols=56 Identities=32% Similarity=0.452 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.++||+||.|+..|+.+||.+|..|+||+..++..||..+||++.+|+|||||+||
T Consensus 5 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 60 (70)
T 2da1_A 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLF 60 (70)
T ss_dssp CCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhH
Confidence 46788999999999999999999999999999999999999999999999999985
No 24
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.79 E-value=2.8e-20 Score=127.11 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 89 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 89 ~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
..++||+||.|+..|+.+||.+|..|+||+..++..||..|||++.+|+||||||||
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~ 75 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRM 75 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999999999999986
No 25
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.79 E-value=2.1e-20 Score=125.15 Aligned_cols=56 Identities=20% Similarity=0.189 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.+.||+||.|+..|+..||.+|..|+||+..++.+||..+||++.+|+|||||+||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~ 60 (73)
T 2l7z_A 5 LEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRV 60 (73)
T ss_dssp SCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhH
Confidence 46788999999999999999999999999999999999999999999999999985
No 26
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.79 E-value=2.5e-20 Score=126.58 Aligned_cols=56 Identities=27% Similarity=0.281 Sum_probs=54.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
++.||+||.|+..|+.+||.+|..|+||+..++..||..|||++.+|+||||||||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~ 60 (80)
T 2dms_A 5 SSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRA 60 (80)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhH
Confidence 46788999999999999999999999999999999999999999999999999997
No 27
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.79 E-value=8.2e-21 Score=122.54 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=46.4
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 91 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 91 rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+++|+||.|+..|+.+||..|..||||+..++..||..+||++.+|+|||||+||
T Consensus 4 k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~ 58 (61)
T 1akh_A 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRM 58 (61)
T ss_dssp --------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 5688999999999999999999999999999999999999999999999999985
No 28
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.79 E-value=2.1e-20 Score=127.07 Aligned_cols=56 Identities=25% Similarity=0.279 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+.+||+||.|+..|+.+||.+|..|+||+..++..||..|||++.+|+||||||||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~ 60 (80)
T 2cue_A 5 SSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRA 60 (80)
T ss_dssp CSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999985
No 29
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.79 E-value=5.2e-21 Score=126.31 Aligned_cols=56 Identities=29% Similarity=0.327 Sum_probs=53.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+++||+||.|+..|+.+||.+|..|+||+..++..||..|||++.+|+|||||+||
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 56 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRA 56 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhH
Confidence 36789999999999999999999999999999999999999999999999999985
No 30
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=1.5e-20 Score=121.15 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=50.9
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 93 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 93 rR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
||+||.|+..|+..||..|..|+||+..++.+||..+||++.+|+|||||+||
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 54 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRM 54 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHh
Confidence 57899999999999999999999999999999999999999999999999985
No 31
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.78 E-value=3.5e-20 Score=125.13 Aligned_cols=57 Identities=19% Similarity=0.211 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 89 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 89 ~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.+..+|+||.|+..|+.+||.+|..++||+..++..||..|||++.+|+||||||||
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~ 66 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRM 66 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999999999999999985
No 32
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.78 E-value=2.7e-20 Score=125.71 Aligned_cols=56 Identities=20% Similarity=0.207 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.++||+||.|+..|+.+||.+|..|+||+..++..||..|||++.+|+||||||||
T Consensus 7 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~ 62 (77)
T 1nk2_P 7 NKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRY 62 (77)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhc
Confidence 46788899999999999999999999999999999999999999999999999985
No 33
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=2.8e-20 Score=126.09 Aligned_cols=56 Identities=30% Similarity=0.490 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+.+||+||.|+..|+.+||.+|..|+||+..++..||.+|||++.+|+|||||+||
T Consensus 5 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 60 (80)
T 2dmq_A 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARA 60 (80)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHH
Confidence 46788999999999999999999999999999999999999999999999999985
No 34
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=3.3e-20 Score=123.09 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+..+++||.|+..|+.+||.+|..|+||+..++.+||.+|||++.+|+|||||+||
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 60 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRA 60 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHh
Confidence 46778899999999999999999999999999999999999999999999999985
No 35
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.78 E-value=2.9e-20 Score=122.87 Aligned_cols=54 Identities=22% Similarity=0.280 Sum_probs=52.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 92 krR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+||+||.|+..|+.+||.+|..|+||+..++..||..|||++.+|+|||||+||
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~ 55 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRR 55 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHH
Confidence 578899999999999999999999999999999999999999999999999985
No 36
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.78 E-value=1.5e-20 Score=124.31 Aligned_cols=54 Identities=20% Similarity=0.223 Sum_probs=52.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 92 krR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+||+||.|+..|+..||.+|..|+||+..++.+||..+||++.+|+|||||+||
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~ 55 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRM 55 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHh
Confidence 578899999999999999999999999999999999999999999999999985
No 37
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.78 E-value=2.1e-20 Score=142.04 Aligned_cols=108 Identities=21% Similarity=0.237 Sum_probs=70.4
Q ss_pred chhhhhhhhhhcCCChHHHhhhh-HH--HHHHHHHHHHHhhc-C-CCCCCC----CCCCCCCCCCCCCCCCCHHHHHHHH
Q psy17899 38 LSQSTICRFESLTLSHNNMIALK-PI--LQAWLEEAEAQAKN-K-RRDPDA----PSVLPAGEKKRKRTSIAAPEKRSLE 108 (145)
Q Consensus 38 fSQttIcRFE~L~LS~knm~klk-Pl--L~kWL~eae~~~~~-~-~~~~~~----~~~~~~~rkrR~RTs~s~~q~~~Le 108 (145)
.||.|++.+=+---.++++..-+ |+ +..||.+.+..... . ...+.. .......++||+||.|+..|+..||
T Consensus 34 ~sq~~ls~~l~~pkpw~~l~~g~~~y~rm~~WL~~pe~~r~~~l~~~~~~~~~~~~~~~~~~~~rr~Rt~ft~~q~~~Le 113 (164)
T 2d5v_A 34 RSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLH 113 (164)
T ss_dssp CCHHHHHHHHHSCCCGGGCSTTHHHHHHHHHHHHSCHHHHHHHTTC--------------------CCCCCCHHHHHHHH
T ss_pred CCchhHHHHcCCCCCHHHHcccchHHHHHHHHHhccchhhhhhhhcccccccccccCCcCCCCCCCCCCcCCHHHHHHHH
Confidence 68888887654333333332211 22 56799776543111 0 111110 0111234678899999999999999
Q ss_pred HhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 109 AYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 109 ~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
..|..++||+..++.+||.+|||++.+|+|||||||+
T Consensus 114 ~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~ 150 (164)
T 2d5v_A 114 AIFKENKRPSKELQITISQQLGLELSTVSNFFMNARR 150 (164)
T ss_dssp HHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhc
Confidence 9999999999999999999999999999999999985
No 38
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.78 E-value=2.7e-20 Score=122.99 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=52.2
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 92 krR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+||+||.|+..|+..||.+|..|+||+..++..||..|||++.+|+|||||+||
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~ 55 (68)
T 1ftt_A 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRY 55 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhh
Confidence 578899999999999999999999999999999999999999999999999985
No 39
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.78 E-value=3.2e-20 Score=126.31 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=53.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 89 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 89 ~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
..++||+||.|+..|+.+||.+|..|+||+..++..||..+||++.+|+|||||+||
T Consensus 15 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~ 71 (81)
T 1fjl_A 15 KRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRA 71 (81)
T ss_dssp --CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhh
Confidence 356788999999999999999999999999999999999999999999999999985
No 40
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.77 E-value=4e-20 Score=121.58 Aligned_cols=54 Identities=26% Similarity=0.345 Sum_probs=52.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 92 krR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.||+||.|+..|+.+||..|..|+||+..++..||..+||++.+|+|||||+||
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 54 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRA 54 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHH
Confidence 368899999999999999999999999999999999999999999999999985
No 41
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.1e-20 Score=126.95 Aligned_cols=56 Identities=25% Similarity=0.370 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcC----CCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQ----PRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~n----p~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+++||+||.|+..|+.+||.+|..+ +||+..++.+||.+|||++.+|+|||||+||
T Consensus 6 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~ 65 (80)
T 2da4_A 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRR 65 (80)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHH
Confidence 4678899999999999999999999 9999999999999999999999999999985
No 42
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.77 E-value=1.1e-19 Score=127.16 Aligned_cols=57 Identities=25% Similarity=0.268 Sum_probs=54.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 89 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 89 ~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+.++||+||.|+..|+..||..|..|+||+..++..||..+||++.+|+||||||||
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~ 70 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRT 70 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhh
Confidence 357788999999999999999999999999999999999999999999999999985
No 43
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.77 E-value=8.1e-20 Score=121.98 Aligned_cols=57 Identities=26% Similarity=0.307 Sum_probs=54.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 89 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 89 ~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.++++|.||.|+..|+..||.+|..|+||+..++.+||..|||++.+|+|||||+||
T Consensus 6 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 62 (75)
T 2m0c_A 6 KGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRA 62 (75)
T ss_dssp CSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHH
Confidence 357788999999999999999999999999999999999999999999999999985
No 44
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.77 E-value=4.6e-20 Score=125.90 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=49.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 89 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 89 ~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.+.+||+||.|+..|+..||.+|..|+||+..++.+||..|||++.+|+||||||||
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~ 73 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRM 73 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhh
Confidence 356788999999999999999999999999999999999999999999999999985
No 45
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.76 E-value=7.8e-20 Score=126.28 Aligned_cols=57 Identities=26% Similarity=0.288 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 89 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 89 ~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.+..||+||.|+..|+.+||.+|..|+||+..++..||..|||++.+|+||||||||
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~ 81 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRM 81 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHH
Confidence 346788999999999999999999999999999999999999999999999999996
No 46
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.75 E-value=2.6e-19 Score=116.60 Aligned_cols=55 Identities=22% Similarity=0.302 Sum_probs=52.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 91 EKKRKRTSIAAPEKRSLEAYF---AVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 91 rkrR~RTs~s~~q~~~Le~~F---~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
..+++||.|+..|+.+||..| ..+|||+..++.+||.++||++.+|+|||||+|+
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~ 59 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRI 59 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 457889999999999999999 9999999999999999999999999999999996
No 47
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.74 E-value=2e-19 Score=126.32 Aligned_cols=56 Identities=23% Similarity=0.248 Sum_probs=50.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+..+|+||.|+..|+..||.+|..|+||+..++.+||..|||++.+|+||||||||
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~ 87 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRM 87 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhH
Confidence 56788999999999999999999999999999999999999999999999999985
No 48
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.74 E-value=1.7e-19 Score=116.20 Aligned_cols=51 Identities=18% Similarity=0.164 Sum_probs=47.3
Q ss_pred CCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 95 KRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 95 ~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.||.|+..|+.+||..|..|+||+..++.+||.++||++.+|+|||||+||
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 52 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRA 52 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhh
Confidence 589999999999999999999999999999999999999999999999986
No 49
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.74 E-value=3.4e-19 Score=118.73 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=50.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 93 KRKRTSIAAPEKRSLEAYFAV-QPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 93 rR~RTs~s~~q~~~Le~~F~~-np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.++||.|+..|+.+||.+|.. |+||+..++..||..+||++.+|+||||||||
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~ 55 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLA 55 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHH
Confidence 467999999999999999996 99999999999999999999999999999986
No 50
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=3.5e-19 Score=119.11 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=50.8
Q ss_pred CCCCCCCCHHHHHHHHHhhhc-CCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 93 KRKRTSIAAPEKRSLEAYFAV-QPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 93 rR~RTs~s~~q~~~Le~~F~~-np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+++||.|+..|+.+||.+|.. |+||+..++..||..+||++.+|+||||||||
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~ 56 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLA 56 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 477999999999999999995 99999999999999999999999999999985
No 51
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=5.8e-19 Score=117.79 Aligned_cols=56 Identities=18% Similarity=0.231 Sum_probs=53.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAV---QPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~---np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
++.+|+||.|+..|+.+||..|.. +|||+..++.+||.++||++.+|+|||||+|+
T Consensus 5 ~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~ 63 (73)
T 1x2n_A 5 SSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARR 63 (73)
T ss_dssp SSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHh
Confidence 467889999999999999999976 99999999999999999999999999999985
No 52
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.73 E-value=5.5e-19 Score=120.34 Aligned_cols=52 Identities=13% Similarity=0.125 Sum_probs=49.5
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 94 RKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 94 R~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.+|+.|+.+|+.+||..|..||||+..++++||..+||++.+|+|||||+|+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~ 56 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRY 56 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHH
Confidence 4567799999999999999999999999999999999999999999999985
No 53
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.73 E-value=5.2e-19 Score=118.02 Aligned_cols=54 Identities=28% Similarity=0.412 Sum_probs=51.8
Q ss_pred CCCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 92 KKRKRTSIAAPEKRSLEAYF---AVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 92 krR~RTs~s~~q~~~Le~~F---~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.||+||.|+..|+.+||..| ..||||+..++..||..+||++.+|+|||||+|+
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~ 57 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRI 57 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 36889999999999999999 9999999999999999999999999999999985
No 54
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.73 E-value=3.3e-19 Score=113.61 Aligned_cols=49 Identities=24% Similarity=0.237 Sum_probs=46.3
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 97 TSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 97 Ts~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
|+|+..|+..||..|..|+||+..++.+||..+||++.+|+||||||||
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~ 50 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRT 50 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhh
Confidence 7899999999999999999999999999999999999999999999986
No 55
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-18 Score=116.79 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=49.8
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 94 RKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 94 R~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
++|+.|+..|+.+||.+|..|+||+..++..||..+||++.+|+||||||||
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~ 60 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRK 60 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTT
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHH
Confidence 4677799999999999999999999999999999999999999999999997
No 56
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.72 E-value=7.2e-19 Score=117.47 Aligned_cols=55 Identities=15% Similarity=0.153 Sum_probs=52.6
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 91 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 91 rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
..++.||.|+..|+..||..|..++||+..++.+||..+||++.+|+|||||+||
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~ 59 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRY 59 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhH
Confidence 4567899999999999999999999999999999999999999999999999985
No 57
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.72 E-value=7.3e-19 Score=123.38 Aligned_cols=57 Identities=19% Similarity=0.195 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 89 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 89 ~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
....+|+||.|+..|+..||..|..++||+..++.+||.+|||++.+|+|||||||+
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~ 78 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRY 78 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhh
Confidence 346678999999999999999999999999999999999999999999999999985
No 58
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.71 E-value=9.7e-19 Score=122.41 Aligned_cols=56 Identities=18% Similarity=0.173 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcC---------------CCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLD---------------LKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~---------------L~~~vVrVWFqNrRa 145 (145)
.++||.||.|+..|+.+||.+|..|+||+..++++||+.|+ |++.+|+||||||||
T Consensus 5 ~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~ 75 (95)
T 2cuf_A 5 SSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRK 75 (95)
T ss_dssp SCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999 999999999999985
No 59
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.71 E-value=1.3e-18 Score=119.81 Aligned_cols=56 Identities=16% Similarity=0.264 Sum_probs=53.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAV---QPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~---np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+.++|+||.|+..|+.+||..|.. +|||+..++..||..+||++.+|+|||||+||
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~ 83 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRR 83 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 467788999999999999999999 99999999999999999999999999999985
No 60
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-18 Score=116.92 Aligned_cols=54 Identities=13% Similarity=0.150 Sum_probs=51.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 92 krR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
..+.||.|+..|+.+||..|..|+||+..++.+||.++||++.+|+|||||+||
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~ 61 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRY 61 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhH
Confidence 345699999999999999999999999999999999999999999999999985
No 61
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=8.5e-19 Score=117.65 Aligned_cols=45 Identities=18% Similarity=0.352 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 101 APEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 101 ~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.+|+.+|++||..|++|+.++|..||+.+||+++||||||||+|+
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa 58 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKV 58 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccc
Confidence 468999999999999999999999999999999999999999985
No 62
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-18 Score=123.10 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhc---------------------CCCCCccccccCccCC
Q psy17899 89 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL---------------------DLKKNVVRPINGHTRA 145 (145)
Q Consensus 89 ~~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l---------------------~L~~~vVrVWFqNrRa 145 (145)
.+++||.||.|++.|+.+||.+|..++||+..++++||+.| ++++.+|+|||||||+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~ 80 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRK 80 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHH
Confidence 35789999999999999999999999999999999999999 7899999999999985
No 63
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.70 E-value=1.6e-18 Score=111.50 Aligned_cols=51 Identities=16% Similarity=0.282 Sum_probs=49.5
Q ss_pred CCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 95 KRTSIAAPEKRSLEAYFAV---QPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 95 ~RTs~s~~q~~~Le~~F~~---np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+||.|+..|+.+||..|.. +|||+..++..||.++||++.+|+|||||+||
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~ 54 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRR 54 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHc
Confidence 5899999999999999999 99999999999999999999999999999985
No 64
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.70 E-value=1.8e-18 Score=118.84 Aligned_cols=54 Identities=28% Similarity=0.412 Sum_probs=50.8
Q ss_pred CCCCCCCCCHHHHHHHHHhh---hcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 92 KKRKRTSIAAPEKRSLEAYF---AVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 92 krR~RTs~s~~q~~~Le~~F---~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.||+||.|+..|+.+||..| ..+|||+..++..||.++||++.+|+|||||+|+
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~ 57 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRI 57 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 36889999999999999999 9999999999999999999999999999999985
No 65
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.70 E-value=2.9e-18 Score=117.62 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAV---QPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~---np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
..++|+||.|+..|+.+||..|.. ||||+.+++.+||.++||++.+|+|||||+|+
T Consensus 5 ~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~ 63 (83)
T 2dmn_A 5 SSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARR 63 (83)
T ss_dssp CCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHh
Confidence 467889999999999999999987 69999999999999999999999999999985
No 66
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.69 E-value=3.2e-18 Score=121.55 Aligned_cols=56 Identities=20% Similarity=0.226 Sum_probs=49.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhh------------------cC---CCCCccccccCccCC
Q psy17899 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEK------------------LD---LKKNVVRPINGHTRA 145 (145)
Q Consensus 90 ~rkrR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~------------------l~---L~~~vVrVWFqNrRa 145 (145)
.++||.||.|+..|+.+||.+|..++||+..++++||.. || |++.+|+||||||||
T Consensus 7 ~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR~ 83 (99)
T 1lfb_A 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRK 83 (99)
T ss_dssp ------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHHH
Confidence 467889999999999999999999999999999999999 88 999999999999985
No 67
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.68 E-value=4.3e-18 Score=116.54 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=49.3
Q ss_pred CCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 92 KKRKRTSIAAPEKRSLEAYFAV---QPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 92 krR~RTs~s~~q~~~Le~~F~~---np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
++++||.|+..|+.+||..|.. +|||+..++..||.++||++.+|+|||||+||
T Consensus 2 K~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~ 58 (83)
T 1le8_B 2 KPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRA 58 (83)
T ss_dssp ---CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHc
Confidence 3456777999999999999999 99999999999999999999999999999985
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=7.2e-18 Score=110.77 Aligned_cols=50 Identities=26% Similarity=0.379 Sum_probs=47.1
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 96 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 96 RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+......|+..||.+|..|+||+..++.+||.+|||++.+|+||||||||
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRa 56 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQA 56 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccC
Confidence 45566899999999999999999999999999999999999999999996
No 69
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.66 E-value=4.3e-18 Score=114.14 Aligned_cols=53 Identities=17% Similarity=0.282 Sum_probs=48.3
Q ss_pred CCCCCCCCHHHHHHHHHhh-hcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 93 KRKRTSIAAPEKRSLEAYF-AVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 93 rR~RTs~s~~q~~~Le~~F-~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.+.|+.++..|+..||.+| ..|+||+..++.+||.+|||++.+|+||||||||
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~ 62 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRN 62 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhccc
Confidence 3445566778999999999 9999999999999999999999999999999996
No 70
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.64 E-value=1.6e-17 Score=110.32 Aligned_cols=46 Identities=15% Similarity=0.192 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 100 AAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 100 s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
+.+|+..||..|..|+||+..++.+||..+||++.+|+|||||||+
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~ 57 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRY 57 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchh
Confidence 5799999999999999999999999999999999999999999985
No 71
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=5.1e-17 Score=113.49 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=46.8
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 98 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 98 s~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.++..|+.+||..|..|+||+..++.+||..|||++.+|+||||||||
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~ 64 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKK 64 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccch
Confidence 789999999999999999999999999999999999999999999985
No 72
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=4.5e-17 Score=113.07 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 99 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 99 ~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
++..|+.+||..|..|+||+..++..||..+||++.+|+||||||||
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~ 66 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRK 66 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHH
Confidence 89999999999999999999999999999999999999999999985
No 73
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.62 E-value=4.8e-17 Score=108.58 Aligned_cols=48 Identities=23% Similarity=0.205 Sum_probs=46.0
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 98 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 98 s~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.++..|+..||..|..|+||+..++.+||.++||++.+|+||||||||
T Consensus 10 ~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRa 57 (69)
T 2l9r_A 10 HMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRY 57 (69)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhh
Confidence 467899999999999999999999999999999999999999999986
No 74
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.57 E-value=1.9e-16 Score=104.49 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=41.6
Q ss_pred HHHHHHHHhh-hcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 102 PEKRSLEAYF-AVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 102 ~q~~~Le~~F-~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.+...||.+| ..++||+..++.+||.+|||++++|+||||||||
T Consensus 10 ~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~ 54 (64)
T 1x2m_A 10 QPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRN 54 (64)
T ss_dssp CHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 4899999999 5789999999999999999999999999999985
No 75
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.52 E-value=1.1e-15 Score=100.87 Aligned_cols=48 Identities=19% Similarity=0.187 Sum_probs=45.0
Q ss_pred CCCHHHHHHHHHhhh---cCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 98 SIAAPEKRSLEAYFA---VQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 98 s~s~~q~~~Le~~F~---~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.|+..|+.+|+..|. .||||+..++.+||.++||++.+|+|||||+|+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~ 54 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARR 54 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHH
Confidence 689999999999999 999999999999999999999999999999985
No 76
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.31 E-value=2.5e-13 Score=112.49 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=51.4
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 92 krR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
.++.|+.++..|+..||+.|..++||+..++.+||.++||++.+|+|||||||+
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~ 418 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRM 418 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhccc
Confidence 356688999999999999999999999999999999999999999999999996
No 77
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.27 E-value=4e-13 Score=93.83 Aligned_cols=48 Identities=15% Similarity=0.127 Sum_probs=45.4
Q ss_pred CCCHHHHHHHHHhhhc---CCCCCHHHHHHHHhhcCCCCCccccccCccCC
Q psy17899 98 SIAAPEKRSLEAYFAV---QPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145 (145)
Q Consensus 98 s~s~~q~~~Le~~F~~---np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrRa 145 (145)
-|+.++..+|+..|.. +|||+.+++.+||.++||++.+|.+||||+|+
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~ 61 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARR 61 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4788999999999987 99999999999999999999999999999984
No 78
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=96.45 E-value=0.003 Score=43.93 Aligned_cols=38 Identities=16% Similarity=0.169 Sum_probs=31.3
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCCChHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNN 55 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~LS~kn 55 (145)
.|..|...|+||.+++..+| .|++||+++|+=..++..
T Consensus 41 ir~~R~~~glTQ~eLA~~~g---------vs~~~is~~E~G~~~~~~ 78 (101)
T 4ghj_A 41 LKQARLNRDLTQSEVAEIAG---------IARKTVLNAEKGKVQLDI 78 (101)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------SCHHHHHHHHTTCCBHHH
T ss_pred HHHHHHHcCCCHHHHHHHcC---------CCHHHHHHHHCCCCCHHH
Confidence 35678899999999999874 578999999987766654
No 79
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=96.11 E-value=0.0033 Score=40.33 Aligned_cols=35 Identities=11% Similarity=0.061 Sum_probs=29.0
Q ss_pred chhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC
Q psy17899 7 PDVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT 50 (145)
Q Consensus 7 ~~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~ 50 (145)
...+.-|..+|+||.+++..+| .|++||+++|+=.
T Consensus 14 ~~lr~~R~~~gltq~elA~~~g---------vs~~tis~~E~G~ 48 (73)
T 3fmy_A 14 EFIVKVRKKLSLTQKEASEIFG---------GGVNAFSRYEKGN 48 (73)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHC---------SCTTHHHHHHTTS
T ss_pred HHHHHHHHHcCCCHHHHHHHhC---------cCHHHHHHHHcCC
Confidence 3467778899999999999984 4688999999853
No 80
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=96.10 E-value=0.00041 Score=55.14 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=30.1
Q ss_pred hhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHHHH---HHHHHHHHhhcCCCCCCCC
Q psy17899 10 YSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPILQA---WLEEAEAQAKNKRRDPDAP 84 (145)
Q Consensus 10 ~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL~k---WL~eae~~~~~~~~~~~~~ 84 (145)
|.-|...|+||.+++..+| .|++||++.|+= ..|...+.+|--.|.. ||-..+........ ....
T Consensus 36 ~~~r~~~g~t~~~la~~~g---------~s~~~is~~e~g~~~p~~~~l~~ia~~l~~~~~~l~~~~~~~~~~~~-~~~~ 105 (311)
T 4ich_A 36 RGLIHSRPGAQREFAAAIG---------LDESKLSKSLNGTRRFSPHELVRIAEHSGVTVNWLINGRDDARTVAA-VPAP 105 (311)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHCCCCHHHHHHHhC---------CCHHHHHHHHcCCCCCCHHHHHHHHHHHCCChhhhhcCCCccccccC-CCCc
Confidence 4457778999999998874 578999999974 4566677666666553 55433221110000 0000
Q ss_pred CCCCCCCCCCCCCCCC-HHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCcc
Q psy17899 85 SVLPAGEKKRKRTSIA-APEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHT 143 (145)
Q Consensus 85 ~~~~~~rkrR~RTs~s-~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNr 143 (145)
......++++.|..-+ ...+.+....|....|- .-.+.+||+..|+++.+|--.|.|+
T Consensus 106 ~~~~~~~~~~~~~~~~r~~il~aa~~l~~~~G~~-~~T~~~IA~~AGvs~gtlY~yF~sK 164 (311)
T 4ich_A 106 TARSRSAPAGEPQSEARRRILETAWRLIARRGYH-NVRIHDIASELGTSNATIHYHFPSK 164 (311)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHHHCGG-GCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred ccccCCCCCccchhhHHHHHHHHHHHHHHHcCCc-cCCHHHHHHHhCCCchhHHHhCCCH
Confidence 0000001111111111 12233455566666553 3567788999999999999999886
No 81
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=96.01 E-value=0.0065 Score=39.36 Aligned_cols=50 Identities=10% Similarity=0.093 Sum_probs=38.4
Q ss_pred CchhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc---CCChHHHhhhhHHHH
Q psy17899 6 MPDVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL---TLSHNNMIALKPILQ 64 (145)
Q Consensus 6 ~~~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L---~LS~knm~klkPlL~ 64 (145)
.+..|..|...|+||.+++..+| .|++||+++|+= ..+...+.+|-=+|.
T Consensus 12 ~~~ik~~R~~~gltq~elA~~~g---------is~~~is~~E~G~~~~p~~~~l~~ia~~l~ 64 (78)
T 3qq6_A 12 GQRIKQYRKEKGYSLSELAEKAG---------VAKSYLSSIERNLQTNPSIQFLEKVSAVLD 64 (78)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTSCCCCBHHHHHHHHHHHT
T ss_pred cHHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCCHHHHHHHHHHHC
Confidence 34567788899999999999874 478999999976 567666666655444
No 82
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=95.94 E-value=0.0076 Score=39.66 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=31.6
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC--CChHHHhhh
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LSHNNMIAL 59 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~--LS~knm~kl 59 (145)
.+..|...|+||.+++..+| .|++||+++|+=. .+...+.++
T Consensus 19 l~~~R~~~gltq~elA~~~g---------is~~~is~~E~G~~~p~~~~l~~i 62 (86)
T 3eus_A 19 LRQARLDAGLTQADLAERLD---------KPQSFVAKVETRERRLDVIEFAKW 62 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHTT---------CCHHHHHHHHTTSSCCBHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhC---------cCHHHHHHHHCCCCCCCHHHHHHH
Confidence 35668889999999998874 5789999999854 455554443
No 83
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=95.79 E-value=0.0052 Score=39.64 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=27.9
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCC
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 51 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~L 51 (145)
++..|...|+||.+++..+| .||+||+++|+=.-
T Consensus 17 l~~~r~~~gltq~~lA~~~g---------vs~~~is~~e~g~~ 50 (80)
T 3kz3_A 17 WEKKKNELGLSYESVADKMG---------MGQSAVAALFNGIN 50 (80)
T ss_dssp HHHHHHHHTCCHHHHHHHTT---------SCHHHHHHHHTTSS
T ss_pred HHHHHHHcCCCHHHHHHHhC---------cCHHHHHHHHcCCC
Confidence 56667788999999999874 47899999998553
No 84
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=95.60 E-value=0.014 Score=37.41 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=36.3
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPILQ 64 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL~ 64 (145)
.+..|...|+||.+++..+| .|++||+++|+= ..|...+.+|--.|.
T Consensus 16 lk~~R~~~glsq~~lA~~~g---------is~~~i~~~e~g~~~~~~~~l~~ia~~l~ 64 (82)
T 3s8q_A 16 IKKIRLEKGMTQEDLAYKSN---------LDRTYISGIERNSRNLTIKSLELIMKGLE 64 (82)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTCCCCBHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHhC---------cCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 45668889999999999874 478999999985 467777766655544
No 85
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=95.56 E-value=0.014 Score=37.72 Aligned_cols=42 Identities=21% Similarity=0.303 Sum_probs=30.6
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhh
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIAL 59 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~kl 59 (145)
.+..|...|+||.+++..+| .|++||+++|+= ..+...+.++
T Consensus 17 l~~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g~~~~~~~~l~~i 60 (88)
T 2wiu_B 17 MKLVRQQNGWTQSELAKKIG---------IKQATISNFENNPDNTTLTTFFKI 60 (88)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHHCGGGCBHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHcCCCCCCHHHHHHH
Confidence 45567788999999999885 468999999973 3444444333
No 86
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=95.41 E-value=0.063 Score=34.10 Aligned_cols=41 Identities=24% Similarity=0.286 Sum_probs=30.4
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC--CChHHHhh
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LSHNNMIA 58 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~--LS~knm~k 58 (145)
.+..|...|+||.+++..+| .|++||+++|+=. .+...+.+
T Consensus 15 l~~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g~~~~~~~~l~~ 57 (84)
T 2ef8_A 15 LTKLRKEASLSQSELAIFLG---------LSQSDISKIESFERRLDALELFE 57 (84)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTSSCCBHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHcCCCCCCHHHHHH
Confidence 45567788999999999884 4689999999854 44433333
No 87
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=95.39 E-value=0.0083 Score=42.40 Aligned_cols=35 Identities=11% Similarity=0.055 Sum_probs=28.6
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCC
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 51 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~L 51 (145)
..+.-|..+|+||.+++..+| .|++||+|+|+=.-
T Consensus 75 ~l~~~R~~~glsq~~la~~~g---------~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 75 FIVKVRKKLSLTQKEASEIFG---------GGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHTTCCHHHHHHHHC---------SCTTHHHHHHHTSS
T ss_pred HHHHHHHHcCCCHHHHHHHHC---------CCHHHHHHHHCCCC
Confidence 456668899999999999985 46789999998543
No 88
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=95.37 E-value=0.02 Score=35.92 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=34.3
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPIL 63 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL 63 (145)
.+..|...|+||.+++..+| .|++||+++|+= ..+...+.+|--.|
T Consensus 15 l~~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g~~~~~~~~l~~la~~l 62 (77)
T 2b5a_A 15 LKKIRTQKGVSQEELADLAG---------LHRTYISEVERGDRNISLINIHKICAAL 62 (77)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTCSCCBHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHC---------CCHHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 45567788999999999874 568999999974 45666666555444
No 89
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=95.31 E-value=0.018 Score=40.87 Aligned_cols=42 Identities=14% Similarity=0.257 Sum_probs=31.2
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc---CCChHHHhhh
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL---TLSHNNMIAL 59 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L---~LS~knm~kl 59 (145)
.+..|...|+||.+++..+| .||+||+++|+= ..|...+.++
T Consensus 45 L~~~R~~~glTQ~eLA~~lG---------is~~~Is~iE~G~~~~~s~~~l~~i 89 (120)
T 2o38_A 45 LNAVIDRARLSQAAAAARLG---------INQPKVSALRNYKLEGFSVERLMTL 89 (120)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCCHHHHHHH
Confidence 34557788999999999884 579999999985 3455554443
No 90
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=95.27 E-value=0.013 Score=36.15 Aligned_cols=34 Identities=18% Similarity=0.176 Sum_probs=27.5
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCC
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 51 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~L 51 (145)
.+..|...|+||.+++..+| .|++||+++|+=.-
T Consensus 8 l~~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g~~ 41 (71)
T 1zug_A 8 LKKRRIALKMTQTELATKAG---------VKQQSIQLIEAGVT 41 (71)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------SCHHHHHHHHTTCC
T ss_pred HHHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHcCCC
Confidence 45667788999999999874 56899999997543
No 91
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=95.20 E-value=0.029 Score=35.91 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=35.8
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC--CChHHHhhhhHHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LSHNNMIALKPILQ 64 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~--LS~knm~klkPlL~ 64 (145)
.+..|...|+||.+++..+| .|++||+++|+=. .+...+.++--.|.
T Consensus 19 l~~~R~~~gltq~elA~~~g---------is~~~is~~e~g~~~~~~~~l~~l~~~l~ 67 (83)
T 3f6w_A 19 LLEARSAAGITQKELAARLG---------RPQSFVSKTENAERRLDVIEFMDFCRGIG 67 (83)
T ss_dssp HHHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 45668888999999999884 4789999999854 56666666655554
No 92
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=95.17 E-value=0.031 Score=36.94 Aligned_cols=44 Identities=11% Similarity=0.109 Sum_probs=32.0
Q ss_pred chhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhh
Q psy17899 7 PDVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIAL 59 (145)
Q Consensus 7 ~~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~kl 59 (145)
...+..|...|+||.+++..+| .|++||+++|+= ..+...+.+|
T Consensus 7 ~~l~~~r~~~gltq~~lA~~~g---------is~~~is~~e~g~~~p~~~~l~~i 52 (99)
T 2l49_A 7 EKIVLMRKSEYLSRQQLADLTG---------VPYGTLSYYESGRSTPPTDVMMNI 52 (99)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHC---------CCHHHHHHHTTTSSCCCHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCHHHHHHH
Confidence 3456668888999999998874 578999999984 3444444443
No 93
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=95.02 E-value=0.015 Score=37.01 Aligned_cols=47 Identities=15% Similarity=0.212 Sum_probs=34.2
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC--CChHHHhhhhHHH
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LSHNNMIALKPIL 63 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~--LS~knm~klkPlL 63 (145)
..+..|...|+||.+++..+| .|++||+++|+=. .+...+.+|--.|
T Consensus 6 ~lk~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g~~~p~~~~l~~ia~~l 54 (77)
T 2k9q_A 6 ELKVERIRLSLTAKSVAEEMG---------ISRQQLCNIEQSETAPVVVKYIAFLRSK 54 (77)
T ss_dssp HHHHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHTCCSCCHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 356678888999999999874 4689999999854 4555555544444
No 94
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=94.99 E-value=0.028 Score=35.01 Aligned_cols=46 Identities=26% Similarity=0.360 Sum_probs=33.0
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC--CChHHHhhhhHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LSHNNMIALKPIL 63 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~--LS~knm~klkPlL 63 (145)
.+..|...|+||.+++..+| .|++||+++|+=. .+...+.++--.|
T Consensus 10 l~~~r~~~gls~~~lA~~~g---------is~~~i~~~e~g~~~~~~~~l~~ia~~l 57 (76)
T 1adr_A 10 IRARRKKLKIRQAALGKMVG---------VSNVAISQWERSETEPNGENLLALSKAL 57 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHTTSSCCCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 45567788999999999885 4689999999843 3555555544444
No 95
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=94.99 E-value=0.033 Score=36.30 Aligned_cols=45 Identities=22% Similarity=0.210 Sum_probs=32.3
Q ss_pred hhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHH
Q psy17899 10 YSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPIL 63 (145)
Q Consensus 10 ~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL 63 (145)
+..|...|+||.+++..+| .|++||+++|+= ..+...+.+|--.|
T Consensus 23 ~~~R~~~glsq~~lA~~~g---------is~~~is~~e~g~~~~~~~~l~~ia~~l 69 (92)
T 1lmb_3 23 EKKKNELGLSQESVADKMG---------MGQSGVGALFNGINALNAYNAALLAKIL 69 (92)
T ss_dssp HHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3346788999999999874 468999999985 34555555554444
No 96
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=94.95 E-value=0.028 Score=38.21 Aligned_cols=47 Identities=21% Similarity=0.207 Sum_probs=36.4
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPILQ 64 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL~ 64 (145)
.+..|...|+||.+++..+| .|++||+++|+= ..+...+.+|--.|.
T Consensus 33 lr~~R~~~gltq~elA~~~g---------is~~~is~iE~G~~~ps~~~l~~ia~~l~ 81 (99)
T 3g5g_A 33 IKKIRLEKGMTQEDLAYKSN---------LDRTYISGIERNSRNLTIKSLELIMKGLE 81 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTCSCCBHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCCCCCCHHHHHHHHHHHC
Confidence 45668889999999999874 578999999985 467777776655554
No 97
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=94.94 E-value=0.031 Score=36.30 Aligned_cols=33 Identities=15% Similarity=0.208 Sum_probs=26.9
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT 50 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~ 50 (145)
.+..|...|+||.+++..+| .|++||++.|+=.
T Consensus 23 l~~~r~~~glsq~elA~~~g---------is~~~is~~e~g~ 55 (83)
T 2a6c_A 23 LQEHLRNSGLTQFKAAELLG---------VTQPRVSDLMRGK 55 (83)
T ss_dssp HHHHHHTTTCCHHHHHHHHT---------SCHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCC
Confidence 45567788999999999884 4689999999754
No 98
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=94.93 E-value=0.033 Score=34.53 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=26.9
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT 50 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~ 50 (145)
.+..|...|+||.+++..+| .|++||+++|+=.
T Consensus 18 l~~~r~~~g~s~~~lA~~~g---------is~~~i~~~e~g~ 50 (74)
T 1y7y_A 18 LRELRTAKGLSQETLAFLSG---------LDRSYVGGVERGQ 50 (74)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTC
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCC
Confidence 45567788999999999884 4689999999753
No 99
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=94.86 E-value=0.042 Score=34.43 Aligned_cols=46 Identities=15% Similarity=0.060 Sum_probs=34.0
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc---CCChHHHhhhhHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL---TLSHNNMIALKPIL 63 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L---~LS~knm~klkPlL 63 (145)
.+..|...|+||.+++..+| .|++||+++|+= ..+...+.+|--.|
T Consensus 12 l~~~r~~~g~sq~~lA~~~g---------is~~~i~~~e~g~~~~~~~~~l~~ia~~l 60 (78)
T 3b7h_A 12 LMELITQQNLTINRVATLAG---------LNQSTVNAMFEGRSKRPTITTIRKVCGTL 60 (78)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHCTTCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCCHHHHHHHHHHc
Confidence 35567788999999998874 468999999985 35666655554444
No 100
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=94.84 E-value=0.019 Score=36.91 Aligned_cols=35 Identities=17% Similarity=0.237 Sum_probs=28.4
Q ss_pred CchhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC
Q psy17899 6 MPDVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT 50 (145)
Q Consensus 6 ~~~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~ 50 (145)
|...+..|...| ||.+++..+| .|++||++.|+=.
T Consensus 1 ~~~l~~~r~~~g-sq~~lA~~lg---------vs~~~is~~e~g~ 35 (79)
T 3bd1_A 1 MNAIDIAINKLG-SVSALAASLG---------VRQSAISNWRARG 35 (79)
T ss_dssp CCHHHHHHHHHS-SHHHHHHHHT---------CCHHHHHHHHHHT
T ss_pred ChHHHHHHHHhC-CHHHHHHHHC---------CCHHHHHHHHHCC
Confidence 455677788899 9999999985 4789999999743
No 101
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=94.79 E-value=0.022 Score=34.91 Aligned_cols=34 Identities=24% Similarity=0.330 Sum_probs=27.6
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCC
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 51 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~L 51 (145)
.+..|...|+||.+++..+| .|++||+++|+=.-
T Consensus 6 l~~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g~~ 39 (69)
T 1r69_A 6 VKSKRIQLGLNQAELAQKVG---------TTQQSIEQLENGKT 39 (69)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------SCHHHHHHHHTTSC
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCC
Confidence 45667788999999999884 46899999997654
No 102
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=94.73 E-value=0.043 Score=34.37 Aligned_cols=43 Identities=14% Similarity=0.152 Sum_probs=32.3
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhh
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIAL 59 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~kl 59 (145)
..+.-|...|+||.+++..+| .|++||+++|+= ..++..+.+|
T Consensus 12 ~l~~~r~~~glsq~~lA~~~g---------is~~~is~~e~g~~~~~~~~l~~i 56 (73)
T 3omt_A 12 RLKSVLAEKGKTNLWLTETLD---------KNKTTVSKWCTNDVQPSLETLFDI 56 (73)
T ss_dssp CHHHHHHHHTCCHHHHHHHTT---------CCHHHHHHHHTTSSCCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCHHHHHHH
Confidence 355667788999999998874 478999999985 4555555444
No 103
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=94.71 E-value=0.021 Score=34.75 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=26.6
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT 50 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~ 50 (145)
.+..|...|+||.+++..+| .|++||+++|+=.
T Consensus 10 l~~~r~~~g~s~~~lA~~~g---------is~~~i~~~e~g~ 42 (68)
T 2r1j_L 10 IRARRKKLKIRQAALGKMVG---------VSNVAISQWERSE 42 (68)
T ss_dssp HHHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHTTS
T ss_pred HHHHHHHcCCCHHHHHHHHC---------CCHHHHHHHHcCC
Confidence 45557788999999999885 4689999999853
No 104
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=94.66 E-value=0.051 Score=35.57 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=26.9
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT 50 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~ 50 (145)
.+..|...|+||.+++..+| .|++||+++|+=.
T Consensus 18 l~~~r~~~glsq~~lA~~~g---------is~~~is~~e~g~ 50 (91)
T 1x57_A 18 IQQGRQSKGLTQKDLATKIN---------EKPQVIADYESGR 50 (91)
T ss_dssp HHHHHHTTTCCHHHHHHHHT---------SCHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCC
Confidence 45567788999999999874 5689999999843
No 105
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=94.64 E-value=0.047 Score=32.92 Aligned_cols=42 Identities=17% Similarity=0.108 Sum_probs=30.8
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC--CChHHHhhh
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LSHNNMIAL 59 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~--LS~knm~kl 59 (145)
.+..|...|+||.+++..+| .|++||+++|+=. .+...+.++
T Consensus 6 l~~~r~~~g~s~~~lA~~~g---------is~~~i~~~e~g~~~~~~~~l~~i 49 (66)
T 2xi8_A 6 LKLIREKKKISQSELAALLE---------VSRQTINGIEKNKYNPSLQLALKI 49 (66)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------SCHHHHHHHHTTSCCCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCHHHHHHH
Confidence 45667788999999999884 4689999999743 344444443
No 106
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=94.61 E-value=0.045 Score=37.33 Aligned_cols=47 Identities=13% Similarity=0.167 Sum_probs=34.4
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPILQ 64 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL~ 64 (145)
.+.-|...|+||.+++..+| .|++||+++|+= ..+...+.+|--.|.
T Consensus 14 l~~~r~~~glsq~~lA~~~g---------is~~~i~~~e~g~~~p~~~~l~~la~~l~ 62 (114)
T 3op9_A 14 LSRLKKEHGLKNHQIAELLN---------VQTRTVAYYMSGETKPDIEKLIRLATYFH 62 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHHTSSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 45557788999999999874 478999999984 456666555544443
No 107
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=94.56 E-value=0.04 Score=36.92 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=28.0
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT 50 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~ 50 (145)
..+..|...|+||.+++..+| .|++||++.|+=.
T Consensus 34 ~lk~~R~~~glsq~elA~~lg---------vs~~~is~~E~G~ 67 (99)
T 2ppx_A 34 RIKIIRRALKLTQEEFSARYH---------IPLGTLRDWEQGR 67 (99)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHhC---------cCHHHHHHHHcCC
Confidence 356678889999999999884 5689999999743
No 108
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=94.53 E-value=0.059 Score=33.21 Aligned_cols=44 Identities=9% Similarity=0.099 Sum_probs=31.6
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC--CChHHHhhh
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LSHNNMIAL 59 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~--LS~knm~kl 59 (145)
.+..|...|+||.+++..+|. ..|++||+++|+=. .+...+.+|
T Consensus 13 l~~~r~~~glsq~~lA~~~g~-------~is~~~i~~~e~g~~~~~~~~l~~l 58 (71)
T 2ewt_A 13 LRAIRTQQGLSLHGVEEKSQG-------RWKAVVVGSYERGDRAVTVQRLAEL 58 (71)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT-------SSCHHHHHHHHHTCSCCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHCC-------cCCHHHHHHHHCCCCCCCHHHHHHH
Confidence 355677889999999988751 26789999999753 455444443
No 109
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=94.42 E-value=0.059 Score=36.20 Aligned_cols=43 Identities=14% Similarity=0.321 Sum_probs=31.3
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC-CChHHHhhh
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT-LSHNNMIAL 59 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~-LS~knm~kl 59 (145)
..+..|...|+||.+++..+| .|++||+++|+=. +|+..+.+|
T Consensus 28 rLk~lR~~~glTq~eLA~~~G---------iS~~tis~iE~G~~~s~~~l~kI 71 (88)
T 3t76_A 28 KLWKLLIDRDMKKGELREAVG---------VSKSTFAKLGKNENVSLTVLLAI 71 (88)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCcCHHHHHHH
Confidence 345667888999999999874 5789999999743 344444443
No 110
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=94.36 E-value=0.057 Score=37.30 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=31.6
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC--CChHHHhhh
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LSHNNMIAL 59 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~--LS~knm~kl 59 (145)
.+.-|...|+||.+++..+| .|++||+++|.=. .+...+.+|
T Consensus 28 Lk~~R~~~gltq~elA~~~g---------is~~~is~~E~G~~~ps~~~l~~i 71 (111)
T 3mlf_A 28 LKELRTDYGLTQKELGDLFK---------VSSRTIQNMEKDSTNIKDSLLSKY 71 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------SCHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCCCCCCHHHHHHH
Confidence 56668889999999999874 5789999999853 454444443
No 111
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.35 E-value=0.012 Score=38.91 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=37.6
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 101 APEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 101 ~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
+.-.+.|+.||.......-+++..|+.+.+|+-+.|+-||-
T Consensus 15 p~~~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa 55 (70)
T 2ys9_A 15 PPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFD 55 (70)
T ss_dssp CCCCHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcchHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHH
Confidence 34457899999999999999999999999999999999993
No 112
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=94.16 E-value=0.084 Score=32.83 Aligned_cols=34 Identities=18% Similarity=0.094 Sum_probs=27.5
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT 50 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~ 50 (145)
..+..|...|+||.+++..+| .|++||+++|+=.
T Consensus 14 ~l~~~r~~~g~s~~~lA~~~g---------is~~~i~~~e~g~ 47 (76)
T 3bs3_A 14 RIKVVLAEKQRTNRWLAEQMG---------KSENTISRWCSNK 47 (76)
T ss_dssp CHHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCC
Confidence 456667788999999999884 4689999999843
No 113
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=94.10 E-value=0.032 Score=38.82 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=32.1
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC--CChHHHhhhh
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LSHNNMIALK 60 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~--LS~knm~klk 60 (145)
.+..|...|+||.+++..+| .|++||+++|+=. .|...+.+|-
T Consensus 17 lk~~R~~~glsq~~lA~~~g---------is~~~is~~E~g~~~p~~~~l~~ia 61 (126)
T 3ivp_A 17 IKEARKKQGLTREQVGAMIE---------IDPRYLTNIENKGQHPSLQVLYDLV 61 (126)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHHSCCCCCHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhC---------cCHHHHHHHHCCCCCCCHHHHHHHH
Confidence 45568889999999999874 5789999999754 4555544443
No 114
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=94.09 E-value=0.074 Score=36.49 Aligned_cols=47 Identities=13% Similarity=0.189 Sum_probs=35.8
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC--CChHHHhhhhHHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LSHNNMIALKPILQ 64 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~--LS~knm~klkPlL~ 64 (145)
.+..|...|+||.+++..+| .|++||+++|+=. .|...+.+|-=.|.
T Consensus 26 lr~~R~~~gltq~elA~~~g---------is~~~is~~E~G~~~p~~~~l~~ia~~l~ 74 (114)
T 3vk0_A 26 MRLFRVNKGWSQEELARQCG---------LDRTYVSAVERKRWNIALSNIEKMAAALG 74 (114)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHTTTCCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCHHHHHHHHHHhC
Confidence 35568888999999999874 4789999999854 56666666655554
No 115
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=94.06 E-value=0.081 Score=34.92 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=34.4
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC--CChHHHhhhhHHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LSHNNMIALKPILQ 64 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~--LS~knm~klkPlL~ 64 (145)
.+..|...|+||.+++..+| .|++||+++|+=. .+...+.+|--.|.
T Consensus 14 lk~~r~~~glsq~~lA~~~g---------is~~~is~~e~G~~~p~~~~l~~ia~~l~ 62 (94)
T 2kpj_A 14 LNSYIAKSEKTQLEIAKSIG---------VSPQTFNTWCKGIAIPRMGKVQALADYFN 62 (94)
T ss_dssp HHHHHTTSSSCHHHHHHHHT---------CCHHHHHHHHTTSCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHhCCCCCCHHHHHHHHHHHC
Confidence 35557788999999999884 4689999999753 45566666555553
No 116
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=93.68 E-value=0.033 Score=39.05 Aligned_cols=34 Identities=18% Similarity=0.082 Sum_probs=28.1
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCC
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 51 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~L 51 (145)
.+..|...|+||.+|+..+| .|+++|++.|.=..
T Consensus 12 Lr~~R~~~glSq~eLA~~~g---------is~~~is~iE~G~~ 45 (112)
T 2wus_R 12 FRKKREERRITLLDASLFTN---------INPSKLKRIEEGDL 45 (112)
T ss_dssp HHHHHHTTTCCHHHHHHHSS---------CCHHHHHHHHHTCC
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCCC
Confidence 45668889999999998874 57899999998654
No 117
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=93.60 E-value=0.039 Score=37.81 Aligned_cols=56 Identities=21% Similarity=0.145 Sum_probs=40.9
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHHH----HHHHHHHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPILQ----AWLEEAEAQ 73 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL~----kWL~eae~~ 73 (145)
.+..|...|+||.+++..+| .|++||+++|+= ..+...+.+|--.|. .|+.+.+..
T Consensus 33 l~~~R~~~glsq~~lA~~~g---------is~~~is~~E~g~~~~~~~~l~~la~~l~v~~~~l~~~~~~~ 94 (117)
T 3f52_A 33 LRSFRADKGVTLRELAEASR---------VSPGYLSELERGRKEVSSELLASVCHALGASVADVLIEAAGS 94 (117)
T ss_dssp HHHHHHHHTCCHHHHHHHTT---------SCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCCCCCCHHHHHHHHHHhCCCHHHHHhccccc
Confidence 45567888999999998874 478999999975 467777777666654 466655543
No 118
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=93.52 E-value=0.11 Score=34.70 Aligned_cols=46 Identities=11% Similarity=0.123 Sum_probs=34.7
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc---CCChHHHhhhhHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL---TLSHNNMIALKPIL 63 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L---~LS~knm~klkPlL 63 (145)
.+..|...|+||.+++..+| .|++||+++|+= ..|...+.++--.|
T Consensus 6 l~~~r~~~gltq~~lA~~~g---------is~~~i~~~e~g~~~~p~~~~l~~ia~~l 54 (111)
T 1b0n_A 6 IKQYRKEKGYSLSELAEKAG---------VAKSYLSSIERNLQTNPSIQFLEKVSAVL 54 (111)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 45667788999999999885 468999999986 45666655555554
No 119
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=93.48 E-value=0.1 Score=34.94 Aligned_cols=46 Identities=17% Similarity=0.143 Sum_probs=34.6
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPIL 63 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL 63 (145)
.+..|...|+||.+++..+| .|++||+++|+= ..|...+.+|--.|
T Consensus 23 l~~~r~~~gltq~~lA~~~g---------is~~~is~~e~g~~~~~~~~l~~l~~~l 70 (104)
T 3cec_A 23 IADILDDLDINTANFAEILG---------VSNQTIQEVINGQRSITVDIAIRLGKAL 70 (104)
T ss_dssp HHHHHHHHTCCHHHHHHHHT---------SCHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCcCCCHHHHHHHHHHH
Confidence 35557788999999999884 568999999974 45666666655444
No 120
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=93.25 E-value=0.12 Score=35.12 Aligned_cols=50 Identities=6% Similarity=0.119 Sum_probs=36.4
Q ss_pred hhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHHH---HHHHHH
Q psy17899 12 RVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPILQ---AWLEEA 70 (145)
Q Consensus 12 rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL~---kWL~ea 70 (145)
.|...|+||.+++..+| .|++||+++|+= ..+...+.+|--+|. .||.+.
T Consensus 19 ~r~~~glsq~~lA~~~g---------is~~~is~~e~g~~~~~~~~l~~la~~l~~~~~~l~~~ 73 (113)
T 2eby_A 19 YLEPLDLKINELAELLH---------VHRNSVSALINNNRKLTTEMAFRLAKVFDTTVDFWLNL 73 (113)
T ss_dssp TTTTTTCCHHHHHHHHT---------SCHHHHHHHHTTSSCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHHcc
Confidence 56778999999999885 468999999974 456777666655553 355543
No 121
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=93.18 E-value=0.11 Score=37.57 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=39.3
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHHH---HHHHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPILQ---AWLEEA 70 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL~---kWL~ea 70 (145)
.+..|...|+||.+++..+| .|+++|+|+|+= ..|...+.+|--.|. .||-+.
T Consensus 73 L~~~R~~~glTq~elA~~lG---------is~s~is~~E~G~~~ps~~~l~~la~~lgv~~~~l~~~ 130 (141)
T 3kxa_A 73 FVSLRMKKGFTQSELATAAG---------LPQPYLSRIENSKQSLQDKTVQKLANALGVSPLEVRAA 130 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHTT---------CCHHHHHHHHHTCSCCCHHHHHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCHHHHHHHHHHHCCCHHHHHHH
Confidence 35567889999999998874 578999999985 567777776665554 355443
No 122
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=93.10 E-value=0.054 Score=38.58 Aligned_cols=34 Identities=12% Similarity=0.206 Sum_probs=28.4
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCC
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 51 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~L 51 (145)
-|+.|...|+||.|++..+| .|+++|++.|+=+-
T Consensus 8 lr~~R~~~gltq~elA~~~g---------is~~~is~iE~g~~ 41 (130)
T 3fym_A 8 LKGRRERLGMTLTELEQRTG---------IKREMLVHIENNEF 41 (130)
T ss_dssp HHHHHHHTTCCHHHHHHHHC---------CCHHHHHHHHTTCG
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCCCC
Confidence 45668889999999999874 57899999998763
No 123
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=92.88 E-value=0.14 Score=35.23 Aligned_cols=43 Identities=9% Similarity=0.227 Sum_probs=34.7
Q ss_pred hhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHHH
Q psy17899 13 VLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPILQ 64 (145)
Q Consensus 13 Ri~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL~ 64 (145)
|...|+||.+++..+| .|++||+++|+= .+|...+.+|--+|.
T Consensus 23 r~~~gltq~eLA~~lG---------is~~~is~ie~G~~~~s~~~~~kla~~lg 67 (104)
T 3trb_A 23 GFLDKMSANQLAKHLA---------IPTNRVTAILNGARSITADTALRLAKFFG 67 (104)
T ss_dssp HHTTSCCHHHHHHHHT---------SCHHHHHHHHTTSSCCCHHHHHHHHHHHT
T ss_pred HHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 7788999999999884 578999999984 468877777766654
No 124
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=92.78 E-value=0.14 Score=34.03 Aligned_cols=40 Identities=13% Similarity=0.217 Sum_probs=29.9
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhh----hhhhhhcC--CChHHHh
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQST----ICRFESLT--LSHNNMI 57 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQtt----IcRFE~L~--LS~knm~ 57 (145)
.+..|...|+||.+++..+| .|++| |+++|+=. .|...+.
T Consensus 6 lk~~R~~~glsq~~lA~~~g---------is~~~~~~~is~~E~g~~~p~~~~l~ 51 (98)
T 3lfp_A 6 LKDARLRAGISQEKLGVLAG---------IDEASASARMNQYEKGKHAPDFEMAN 51 (98)
T ss_dssp HHHHHHHHTCCHHHHHHHTT---------CCHHHHHHHHHHHHHTSSCCCHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHhC---------CCcchhhhHHHHHHCCCCCCCHHHHH
Confidence 45668889999999999875 46788 99999864 3444433
No 125
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=92.77 E-value=0.12 Score=35.28 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=26.8
Q ss_pred hhhhhh--hcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC
Q psy17899 9 VYSRVL--FTGVTQADVGKALANLKLPGVGALSQSTICRFESLT 50 (145)
Q Consensus 9 f~~rRi--~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~ 50 (145)
.+..|. ..|+||.+++..+| .|++||+++|.=.
T Consensus 39 lk~~R~~~~~glsq~elA~~~g---------is~~~is~~E~G~ 73 (107)
T 2jvl_A 39 IEQGRQKFEPTMTQAELGKEIG---------ETAATVASYERGT 73 (107)
T ss_dssp HHHHHTTSSSCCCHHHHHHHHT---------CCHHHHHHHTTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCC
Confidence 345577 88999999999884 4689999999854
No 126
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=92.70 E-value=0.07 Score=40.62 Aligned_cols=34 Identities=9% Similarity=0.130 Sum_probs=29.3
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT 50 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~ 50 (145)
.++.=|...|+||.+++.+|| .||+||+++|+=.
T Consensus 94 ~lk~lR~~~glTQ~elA~~LG---------vsr~tis~yE~G~ 127 (170)
T 2auw_A 94 MFGDWMHRNNLSLTTAAEALG---------ISRRMVSYYRTAH 127 (170)
T ss_dssp HHHHHHHHTTCCHHHHHHHHT---------SCHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHcCC
Confidence 467778899999999999984 5899999999854
No 127
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=91.87 E-value=0.16 Score=37.49 Aligned_cols=46 Identities=15% Similarity=0.188 Sum_probs=34.1
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc---CCChHHHhhhhHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL---TLSHNNMIALKPIL 63 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L---~LS~knm~klkPlL 63 (145)
.++.|...|+||.+++..+| .|++||+++|+= ..|...+.+|--.|
T Consensus 15 l~~~r~~~g~s~~~la~~~g---------is~~~ls~~e~g~~~~p~~~~l~~ia~~l 63 (198)
T 2bnm_A 15 LKDRREQVKMDHAALASLLG---------ETPETVAAWENGEGGELTLTQLGRIAHVL 63 (198)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHTTTCTTCBHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 45668889999999999874 578999999985 45666655543333
No 128
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=91.63 E-value=0.21 Score=34.93 Aligned_cols=39 Identities=36% Similarity=0.504 Sum_probs=32.5
Q ss_pred c-cchHHHHHHHhhccCCCCccchhhhhhhhhhcCCChHHHhhhhHHHHHHHHHH
Q psy17899 17 G-VTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEA 70 (145)
Q Consensus 17 G-~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~LS~knm~klkPlL~kWL~ea 70 (145)
| .||.+|+..|| -|++||+|- + +.+.++.+-+..||+..
T Consensus 57 ge~TQREIA~~lG---------iS~stISRi-~-----r~L~~l~~~~k~~l~~~ 96 (101)
T 1jhg_A 57 GEMSQRELKNELG---------AGIATITRG-S-----NSLKAAPVELRQWLEEV 96 (101)
T ss_dssp CCSCHHHHHHHHC---------CCHHHHHHH-H-----HHHHHSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHC---------CChhhhhHH-H-----HHHHHccHHHHHHHHHH
Confidence 6 99999999985 468999998 2 45667999999999864
No 129
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=91.55 E-value=0.23 Score=36.60 Aligned_cols=47 Identities=9% Similarity=0.077 Sum_probs=35.3
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHHH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPILQ 64 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL~ 64 (145)
.+..|...|+||.+++..+| .|++||++.|+= ..|...+.+|--.|.
T Consensus 16 l~~~r~~~gltq~~lA~~~g---------is~~~is~~e~g~~~p~~~~l~~ia~~l~ 64 (192)
T 1y9q_A 16 LKNLRKSRGLSLDATAQLTG---------VSKAMLGQIERGESSPTIATLWKIASGLE 64 (192)
T ss_dssp HHHHHHHTTCCHHHHHHHHS---------SCHHHHHHHHTTCSCCCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCHHHHHHHHHHHC
Confidence 45567788999999999874 578999999975 456666666655553
No 130
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=91.11 E-value=0.2 Score=32.78 Aligned_cols=52 Identities=21% Similarity=0.302 Sum_probs=37.2
Q ss_pred hhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHH----HHHHHHH
Q psy17899 10 YSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPIL----QAWLEEA 70 (145)
Q Consensus 10 ~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL----~kWL~ea 70 (145)
+..|...|+||.+++..+| .|++||++.|+= ..+...+.++--.| +-||...
T Consensus 14 ~~~r~~~gltq~~lA~~~g---------is~~~is~~e~g~~~~~~~~~~~i~~~l~v~~~~~l~~~ 71 (94)
T 2ict_A 14 QESLDELNVSLREFARAME---------IAPSTASRLLTGKAALTPEMAIKLSVVIGSSPQMWLNLQ 71 (94)
T ss_dssp HHHHHHHTCCHHHHHHHHT---------CCHHHHHHHHHTSSCCCHHHHHHHHHHTCSCHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHhC---------CCHHHHHHHHcCCCCCCHHHHHHHHHHHCcCHHHHHHHH
Confidence 4557788999999999885 468999999974 45666666655444 3488744
No 131
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=89.41 E-value=0.11 Score=31.83 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 96 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 96 RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
|..|+++.+.....++... .+....+.++|..+|++..+|+.|..
T Consensus 3 r~~ys~efK~~~~~~~~~g-~s~~~~~~~vA~~~gIs~~tl~~W~~ 47 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYRND-NDCKGNQRATARKYNIHRRQIQKWLQ 47 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHC-TTTTTCHHHHHHHTTSCHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHHHHcC-CCcchHHHHHHHHHCcCHHHHHHHHH
Confidence 5578998887765555433 33233477999999999999999964
No 132
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain, transcription; 2.25A {Enterococcus faecalis} SCOP: a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A 2grl_A 2grm_A
Probab=88.82 E-value=0.17 Score=40.87 Aligned_cols=47 Identities=17% Similarity=0.096 Sum_probs=34.4
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHHH
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPILQ 64 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL~ 64 (145)
.+|..|...|+||.+++. + ..|++||+|+|+= +.|...+.++--.|.
T Consensus 7 ~lk~~R~~~gltq~~la~--------~--~is~~~is~~E~g~~~~~~~~l~~i~~~l~ 55 (317)
T 2awi_A 7 VLKQIRQELNYHQIDLYS--------G--IMSKSVYIKVEADSRPISVEELSKFSERLG 55 (317)
T ss_dssp HHHHHHHHTTCCHHHHHT--------T--TSCHHHHHHHHTTCSCCBHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHH--------H--hcCHHHHHHHHCCCCCCCHHHHHHHHHHcC
Confidence 567889999999999873 3 2789999999975 456666555544433
No 133
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=88.02 E-value=0.43 Score=36.44 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=33.7
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhHHHH
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKPILQ 64 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkPlL~ 64 (145)
..|.-|...|+||.+++.. - .|++||+++|+= ..|...+.+|--.|.
T Consensus 9 ~i~~~R~~~~~tq~~la~~---------~-~s~~~~s~~e~g~~~~~~~~l~~i~~~l~ 57 (293)
T 3u3w_A 9 EIKKIRVLRGLTQKQLSEN---------I-CHQSEVSRIESGAVYPSMDILQGIAAKLQ 57 (293)
T ss_dssp HHHHHHHHTTCCHHHHHTT---------T-SCHHHHHHHHTTSCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCHHHHHHH---------h-CCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 3566788999999998643 2 679999999975 456666665544443
No 134
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=87.41 E-value=0.01 Score=44.02 Aligned_cols=29 Identities=10% Similarity=0.073 Sum_probs=21.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhcCCCCCH
Q psy17899 91 EKKRKRTSIAAPEKRSLEAYFAVQPRPSG 119 (145)
Q Consensus 91 rkrR~RTs~s~~q~~~Le~~F~~np~Ps~ 119 (145)
..||.||+|+..|+.+|++.|..+|||+.
T Consensus 135 ~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 135 GGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp ------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 45789999999999999999999999973
No 135
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=87.24 E-value=0.28 Score=33.94 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=37.3
Q ss_pred CCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCcc
Q psy17899 94 RKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHT 143 (145)
Q Consensus 94 R~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNr 143 (145)
++|+.++.+++..+-..+..++.++. .++|+.+|++..+|.-|..+.
T Consensus 3 ~~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~ 49 (131)
T 1hlv_A 3 PKRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNK 49 (131)
T ss_dssp CSSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTH
T ss_pred CcceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhch
Confidence 36889999999887777766777664 357899999999999997653
No 136
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=87.24 E-value=0.53 Score=35.61 Aligned_cols=44 Identities=18% Similarity=0.146 Sum_probs=31.7
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc--CCChHHHhhhhH
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL--TLSHNNMIALKP 61 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L--~LS~knm~klkP 61 (145)
.+..|...|+||.+++..+| .|++||++.|+= ..+...+.+|--
T Consensus 22 l~~~r~~~g~t~~~lA~~~g---------is~~~i~~~~~g~~~p~~~~l~~ia~ 67 (236)
T 3bdn_A 22 YEKKKNELGLSQESVADKMG---------MGQSGVGALFNGINALNAYNAALLAK 67 (236)
T ss_dssp HHHHTTTTTCCSHHHHHHHT---------SCHHHHHHHTTTTSCCCHHHHHHTTT
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 34556678999999999874 478999999975 345555555533
No 137
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=86.51 E-value=0.61 Score=28.76 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=21.9
Q ss_pred hhhhcccchHHHHHHHhhccCCCCccchhhhhhhhh
Q psy17899 12 RVLFTGVTQADVGKALANLKLPGVGALSQSTICRFE 47 (145)
Q Consensus 12 rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE 47 (145)
.-|..|.||.+++.+|| .||+||++.|
T Consensus 5 ~~i~~~~tq~~lA~~lG---------vs~~~Vs~we 31 (61)
T 1rzs_A 5 DVIDHFGTQRAVAKALG---------ISDAAVSQWK 31 (61)
T ss_dssp HHHHHHSSHHHHHHHHT---------CCHHHHHHCC
T ss_pred HHHHHcCCHHHHHHHhC---------CCHHHHHHHH
Confidence 33455779999999985 4789999999
No 138
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=86.28 E-value=0.14 Score=37.16 Aligned_cols=32 Identities=19% Similarity=0.309 Sum_probs=0.0
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL 49 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L 49 (145)
.+..|...|+||.+++..+| .|++||+|.|.=
T Consensus 6 lk~~R~~~gltq~elA~~lg---------is~~~vs~~e~G 37 (158)
T 2p5t_A 6 IKSLRKTHDLTQLEFARIVG---------ISRNSLSRYENG 37 (158)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHCC
Confidence 45667788999999998875 467899999863
No 139
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=85.49 E-value=0.81 Score=31.02 Aligned_cols=49 Identities=22% Similarity=0.262 Sum_probs=36.1
Q ss_pred hhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCC--ChHHHhhhhHHHHHHHHHHH
Q psy17899 12 RVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTL--SHNNMIALKPILQAWLEEAE 71 (145)
Q Consensus 12 rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~L--S~knm~klkPlL~kWL~eae 71 (145)
++|.-|++|.+++-.. | .||+||+..|.=.. |+. .++=-.|..|..+-.
T Consensus 27 K~il~GikQ~eLAK~i------G---IsqsTLSaIenG~~~PsL~--~kIAk~fg~w~~~~~ 77 (83)
T 2l1p_A 27 KDLLKDMNQSSLAKEC------P---LSQSMISSIVNSTYYANVS--AAKCQEFGRWYKHFK 77 (83)
T ss_dssp HHHHTTSCHHHHHHHS------S---SCHHHHHHHHTCSSCCCCC--SHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHc------C---CCHHHHHHHHcCCCCCCch--HHHHHHHHHHHHHHH
Confidence 3333399999988876 3 67999999997553 444 677778999987643
No 140
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=84.85 E-value=0.74 Score=33.08 Aligned_cols=50 Identities=32% Similarity=0.462 Sum_probs=39.8
Q ss_pred CCCCCCCCHHHHHHHHHhh-hcCCCCCHHHHHHHHh-hc--CCCCCccccccCc
Q psy17899 93 KRKRTSIAAPEKRSLEAYF-AVQPRPSGEKIAAIAE-KL--DLKKNVVRPINGH 142 (145)
Q Consensus 93 rR~RTs~s~~q~~~Le~~F-~~np~Ps~~e~~~LA~-~l--~L~~~vVrVWFqN 142 (145)
+++|+++|.+|+..+-.++ +.+|..+..++..-|. +. +++..+|.-|..|
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~ 59 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSS 59 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhh
Confidence 5789999999999999999 8899998877655332 56 7888888877654
No 141
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=84.34 E-value=0.18 Score=38.67 Aligned_cols=42 Identities=21% Similarity=0.255 Sum_probs=29.2
Q ss_pred hhhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcC--CChHHHhhh
Q psy17899 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLT--LSHNNMIAL 59 (145)
Q Consensus 8 ~f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~--LS~knm~kl 59 (145)
.++..|...|+||.+++.. - .|++||+|+|+=. .|...+.+|
T Consensus 9 ~i~~~r~~~~~tq~~la~~---------~-~s~~~is~~e~g~~~~~~~~l~~l 52 (293)
T 2qfc_A 9 EIKKIRVLRGLTQKQLSEN---------I-CHQSEVSRIESGAVYPSMDILQGI 52 (293)
T ss_dssp HHHHHHHHHTCCTTTTTTT---------T-SCHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHH---------H-cCHHHHHHHHCCCCCCCHHHHHHH
Confidence 3567788999999986533 2 6789999999743 355444443
No 142
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=84.02 E-value=1.3 Score=28.09 Aligned_cols=42 Identities=19% Similarity=0.096 Sum_probs=28.7
Q ss_pred hhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc---CCChHHHhhhhHHH
Q psy17899 11 SRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL---TLSHNNMIALKPIL 63 (145)
Q Consensus 11 ~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L---~LS~knm~klkPlL 63 (145)
..|... ||.+++..+| .|++||+++|+= ..+...+.+|--.|
T Consensus 23 ~~R~~~--sq~~lA~~~g---------is~~~is~~E~g~~~~p~~~~l~~ia~~l 67 (86)
T 2ofy_A 23 SARGDM--SMVTVAFDAG---------ISVETLRKIETGRIATPAFFTIAAVARVL 67 (86)
T ss_dssp HHHTTS--CHHHHHHHHT---------CCHHHHHHHHTTCCSSCBHHHHHHHHHHT
T ss_pred HHHHHC--CHHHHHHHhC---------CCHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 334444 9999988874 578999999984 35666655554444
No 143
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=83.82 E-value=0.64 Score=37.82 Aligned_cols=47 Identities=23% Similarity=0.149 Sum_probs=35.2
Q ss_pred hhhhhhh------cccchHHHHHHHhhccCCCCccchhhhhhhhhhc---CCChHHHhhhhHHHH
Q psy17899 9 VYSRVLF------TGVTQADVGKALANLKLPGVGALSQSTICRFESL---TLSHNNMIALKPILQ 64 (145)
Q Consensus 9 f~~rRi~------LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L---~LS~knm~klkPlL~ 64 (145)
-|..|.. .|+||.+|+..+| .|+++|++.|.= +.|...+.+|--.|.
T Consensus 11 Lr~lR~~~~~~~~~gLtqeelA~~~g---------vS~~~is~iE~G~~~~ps~~~l~~lA~aL~ 66 (292)
T 3pxp_A 11 VQALRREHRDEKGRVWTQEVLAERTQ---------LPKRTIERIENGSLAHLDADILLRLADALE 66 (292)
T ss_dssp HHHHHHTCBCTTSCBCCHHHHHHHHT---------CCHHHHHHHHHTCCSCCCHHHHHHHHHHTT
T ss_pred HHHHHHccCccCcCCCCHHHHHHHHC---------cCHHHHHHHHCCCCCCCCHHHHHHHHHhcC
Confidence 3556778 8999999998874 579999999974 456666666655554
No 144
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=83.82 E-value=0.59 Score=32.33 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=28.4
Q ss_pred hhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCCChHHHhhhhHHH
Q psy17899 13 VLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPIL 63 (145)
Q Consensus 13 Ri~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~LS~knm~klkPlL 63 (145)
||. ++||.+|+.++|. +.|||+|++. . .+..+|.+--+|
T Consensus 20 ~la-~~gq~~vA~~iGV---------~~StISR~k~-~-~~~~~~~lLa~l 58 (97)
T 1xwr_A 20 KIA-MLGTEKTAEAVGV---------DKSQISRWKR-D-WIPKFSMLLAVL 58 (97)
T ss_dssp HHH-HHCHHHHHHHHTC---------CTTTHHHHHH-H-HHHHHHHHHHHH
T ss_pred HHH-HHhHHHHHHHhCC---------CHHHHHHHHh-h-hHHHHHHHHHHH
Confidence 444 8999999999963 4689999877 2 145677776555
No 145
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=83.67 E-value=0.75 Score=30.15 Aligned_cols=45 Identities=16% Similarity=0.130 Sum_probs=32.6
Q ss_pred CCCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 92 krR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
+++++..++.+++...-..+... . -+.+||+.+|+++.+|..|..
T Consensus 16 ~~~~~~~ys~e~k~~~v~~~~~g-~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 16 GKRPLRSLTPRDKIHAIQRIHDG-E----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp CSSCCSSCCHHHHHHHHHHHHHT-C----CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHCC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 34567789998876555555432 2 366889999999999999963
No 146
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=82.67 E-value=8.1 Score=25.41 Aligned_cols=86 Identities=13% Similarity=0.091 Sum_probs=48.9
Q ss_pred chhhhhhhhhhcCCChHHHhhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhcCCCC
Q psy17899 38 LSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRP 117 (145)
Q Consensus 38 fSQttIcRFE~L~LS~knm~klkPlL~kWL~eae~~~~~~~~~~~~~~~~~~~rkrR~RTs~s~~q~~~Le~~F~~np~P 117 (145)
+|...|++ .|.+| +.-+.+|+...+.. +... +..+..++...+++++...+......+|..
T Consensus 34 ~s~~~ia~--~lgis-------~~Tv~~w~~~~~~~---g~~~-------~~~~~g~~~~~l~~~~~~~i~~~~~~~~~~ 94 (128)
T 1pdn_C 34 IRPCVISR--QLRVS-------HGCVSKILNRYQET---GSIR-------PGVIGGSKPRIATPEIENRIEEYKRSSPGM 94 (128)
T ss_dssp CCHHHHHH--HHTCC-------HHHHHHHHHHHHHH---CCSS-------CCCCSCCCCCSSCSTHHHHHHHTTTTCTTC
T ss_pred CCHHHHHH--HHCcC-------HHHHHHHHHHHHhh---CCcc-------cccCCCCCCCcCCHHHHHHHHHHHHhCcch
Confidence 45666665 34455 34467788776543 2110 011111123457777888888888888888
Q ss_pred CHHHHHHHHhhcCC-------CCCccccccCc
Q psy17899 118 SGEKIAAIAEKLDL-------KKNVVRPINGH 142 (145)
Q Consensus 118 s~~e~~~LA~~l~L-------~~~vVrVWFqN 142 (145)
+..++...-.+.|+ +..+|..|...
T Consensus 95 s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 95 FSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred HHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 87766543322274 67788888754
No 147
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=80.58 E-value=1.3 Score=26.82 Aligned_cols=28 Identities=29% Similarity=0.312 Sum_probs=22.9
Q ss_pred hhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhh
Q psy17899 10 YSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFE 47 (145)
Q Consensus 10 ~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE 47 (145)
+.-+...| ||++++..|| .||+||++.|
T Consensus 7 ~~~~~~~g-s~~~~A~~lg---------is~~~vs~~~ 34 (67)
T 2pij_A 7 SKYLEEHG-TQSALAAALG---------VNQSAISQMV 34 (67)
T ss_dssp HHHHHHTC-CHHHHHHHHT---------SCHHHHHHHH
T ss_pred HHHHHHcC-CHHHHHHHHC---------cCHHHHHHHH
Confidence 44566779 9999999884 5799999998
No 148
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=80.47 E-value=0.87 Score=25.21 Aligned_cols=40 Identities=10% Similarity=0.246 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCc
Q psy17899 98 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGH 142 (145)
Q Consensus 98 s~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqN 142 (145)
.+++.++......+... . ...+||+.+|++..+|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~g-~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHhh
Confidence 46777775544455332 2 3668899999999999998754
No 149
>1nr3_A MTH0916, DNA-binding protein TFX; northeast structural genomics consortium, reduced- dimensionality PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.236.1.1
Probab=79.85 E-value=0.19 Score=35.17 Aligned_cols=25 Identities=16% Similarity=0.339 Sum_probs=21.0
Q ss_pred cccchHHHHHHHhhccCCCCccchhhhhhhhhhc
Q psy17899 16 TGVTQADVGKALANLKLPGVGALSQSTICRFESL 49 (145)
Q Consensus 16 LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L 49 (145)
.|+||.+++..+| .|++||++.|+=
T Consensus 4 ~glTQ~eLA~~~G---------vs~~~is~~E~G 28 (122)
T 1nr3_A 4 RGWSQKKIARELK---------TTRQNVSAIERK 28 (122)
T ss_dssp CSCSSCSTHHHHH---------HCCSSSCCHHHH
T ss_pred cCCCHHHHHHHhC---------CCHHHHHHHHcC
Confidence 6999999999986 356789999874
No 150
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=78.81 E-value=14 Score=25.63 Aligned_cols=86 Identities=14% Similarity=0.055 Sum_probs=51.6
Q ss_pred chhhhhhhhhhcCCChHHHhhhhHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHhhhcCCCC
Q psy17899 38 LSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRP 117 (145)
Q Consensus 38 fSQttIcRFE~L~LS~knm~klkPlL~kWL~eae~~~~~~~~~~~~~~~~~~~rkrR~RTs~s~~q~~~Le~~F~~np~P 117 (145)
.|...|++ .|.+| +.-+.+|+..-+.. |.. .+..+..++...+++++...+......+|..
T Consensus 49 ~s~~~iA~--~lgis-------~~TV~rw~~~~~~~---G~~-------~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~ 109 (149)
T 1k78_A 49 VRPCDISR--QLRVS-------HGCVSKILGRYYET---GSI-------KPGVIGGSKPKVATPKVVEKIAEYKRQNPTM 109 (149)
T ss_dssp CCHHHHHH--HHTCC-------HHHHHHHHHHHHHH---SCC-------CCCCCCCCCCSSSCHHHHHHHHHHHHHCTTC
T ss_pred CCHHHHHH--HHCcC-------HHHHHHHHHHHHHc---CCC-------CccCCCCCCCCCCCHHHHHHHHHHHHhCcch
Confidence 56667765 45555 44567888876543 211 0111222234567888889999988888888
Q ss_pred CHHHHHHHH-hhc----C--CCCCccccccCc
Q psy17899 118 SGEKIAAIA-EKL----D--LKKNVVRPINGH 142 (145)
Q Consensus 118 s~~e~~~LA-~~l----~--L~~~vVrVWFqN 142 (145)
+..++...- ++- | ++..+|.-|...
T Consensus 110 s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~ 141 (149)
T 1k78_A 110 FAWEIRDRLLAERVCDNDTVPSVSSINRIIRT 141 (149)
T ss_dssp CHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHC
T ss_pred hHHHHHHHHHHhcccccCCCcCHHHHHHHHHH
Confidence 876654322 211 5 677788877644
No 151
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=78.15 E-value=1.8 Score=29.22 Aligned_cols=37 Identities=16% Similarity=0.277 Sum_probs=28.2
Q ss_pred ccchHHHHHHHhhccCCCCccchhhhhhhhhhcCCChHHHhhhhHHHH
Q psy17899 17 GVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQ 64 (145)
Q Consensus 17 G~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~LS~knm~klkPlL~ 64 (145)
-++|.+|+-++| .+.|||+|+.. +. +.+||+|--+|.
T Consensus 24 ~~gQ~~vAe~~G---------vdeStISR~k~-~~-~~~~~~lLa~Lg 60 (83)
T 1zs4_A 24 MLGTEKTAEAVG---------VDKSQISRWKR-DW-IPKFSMLLAVLE 60 (83)
T ss_dssp HHCHHHHHHHHT---------SCHHHHHHHHH-HT-HHHHHHHHHHHT
T ss_pred HHhhHHHHHHhC---------CCHHHHhhhhh-hH-HHHHHHHHHHhc
Confidence 589999999986 45799999877 22 567888776664
No 152
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=78.02 E-value=2.5 Score=29.75 Aligned_cols=43 Identities=28% Similarity=0.242 Sum_probs=32.7
Q ss_pred ccchHHHHHHHhhccCCCCccchhhhhhhhhhc---CCChHHHhhhhHHH
Q psy17899 17 GVTQADVGKALANLKLPGVGALSQSTICRFESL---TLSHNNMIALKPIL 63 (145)
Q Consensus 17 G~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L---~LS~knm~klkPlL 63 (145)
++||.+|+.++|. . | ...|+++|+..|+= +-|...+.+|--++
T Consensus 24 ~lT~~elA~~~~~-~--G-~~iS~s~is~iE~G~r~~Ps~~~l~~iA~~f 69 (123)
T 3qwg_A 24 PHTSAEVIAALKA-E--G-ITMSAPYLSQLRSGNRTNPSGATMAALANFF 69 (123)
T ss_dssp SCCHHHHHHHHHH-T--T-CCCCHHHHHHHHHTSSCCCCHHHHHHHHHHT
T ss_pred CCCHHHHHHHHcc-c--C-CCcCHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 6999999999994 3 5 36999999999962 56766666654443
No 153
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=78.00 E-value=1.5 Score=31.33 Aligned_cols=44 Identities=27% Similarity=0.248 Sum_probs=34.3
Q ss_pred ccchHHHHHHHhhccCCCCccchhhhhhhhhhc---CCChHHHhhhhHHHH
Q psy17899 17 GVTQADVGKALANLKLPGVGALSQSTICRFESL---TLSHNNMIALKPILQ 64 (145)
Q Consensus 17 G~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L---~LS~knm~klkPlL~ 64 (145)
++||.+|+.++|. . | ...|+++|+..|+= +-|...+.+|--++.
T Consensus 26 ~~T~~elA~~~~~-~--G-~~is~s~is~~E~G~r~~Ps~~~l~~iA~~f~ 72 (135)
T 3r1f_A 26 PHTSAEVIAALKA-E--G-ITMSAPYLSQLRSGNRTNPSGATMAALANFFR 72 (135)
T ss_dssp CCCHHHHHHHHHT-T--T-CCCCHHHHHHHHHTSSCCCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHcc-c--C-CCcCHHHHHHHHCCCCCCCCHHHHHHHHHHhC
Confidence 7999999999994 3 5 36899999999963 567777777655554
No 154
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=77.39 E-value=1.7 Score=27.94 Aligned_cols=27 Identities=4% Similarity=0.106 Sum_probs=21.8
Q ss_pred hhhcccchHHHHHHHhhccCCCCccchhhhhhhhhh
Q psy17899 13 VLFTGVTQADVGKALANLKLPGVGALSQSTICRFES 48 (145)
Q Consensus 13 Ri~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~ 48 (145)
+.+-|+||++++..+| .|++||++.|.
T Consensus 18 l~~~glT~~~LA~~~G---------vs~stls~~~~ 44 (74)
T 1neq_A 18 LKKRKLSLSALSRQFG---------YAPTTLANALE 44 (74)
T ss_dssp HHTTSCCHHHHHHHHS---------SCHHHHHHTTT
T ss_pred HHHcCCCHHHHHHHHC---------cCHHHHHHHHc
Confidence 3466999999998874 57899998876
No 155
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=75.11 E-value=1.7 Score=28.53 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 96 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 96 RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
|..|+++++...-..+... ....+.+||+.+|++..+|..|..
T Consensus 3 r~~ys~e~k~~~v~~~~~~---~g~s~~~ia~~~gIs~~tl~rW~~ 45 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENS---DGASLQQIANDLGINRVTLKNWII 45 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTG---GGSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHc---CCChHHHHHHHHCcCHHHHHHHHH
Confidence 4568888886555444322 022478999999999999999964
No 156
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=70.85 E-value=1.5 Score=24.65 Aligned_cols=39 Identities=8% Similarity=0.027 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCc
Q psy17899 99 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGH 142 (145)
Q Consensus 99 ~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqN 142 (145)
+++++...+...+... ....+||+.+|++..+|..|+..
T Consensus 6 ~~~~~~~~i~~l~~~g-----~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 6 INKHEQEQISRLLEKG-----HPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp SCTTHHHHHHHHHHTT-----CCHHHHHHTTSCCHHHHHHHSCT
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHH
Confidence 4444544444444432 23678899999999999999864
No 157
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=69.04 E-value=27 Score=24.57 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=25.5
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhc---CCCCCHHHHHHHHhh
Q psy17899 91 EKKRKRTSIAAPEKRSLEAYFAV---QPRPSGEKIAAIAEK 128 (145)
Q Consensus 91 rkrR~RTs~s~~q~~~Le~~F~~---np~Ps~~e~~~LA~~ 128 (145)
..+|.|.+-.++.-.+|-..|.. +...|...|.+=|..
T Consensus 73 ~~kr~r~~~~~~le~~L~~Wi~~~~~~~~it~~~I~~kA~~ 113 (144)
T 1iuf_A 73 DVKRNRPPKYPLLEAALFEWQVQQGDDATLSGETIKRAAAI 113 (144)
T ss_dssp SSSCCCCCSCHHHHHHHHHHHHHTCTTCCCSSHHHHHHHHH
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 44556777788888888888876 444666666554443
No 158
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=68.39 E-value=3.1 Score=26.17 Aligned_cols=23 Identities=9% Similarity=0.115 Sum_probs=17.9
Q ss_pred cchHHHHHHHhhccCCCCccchhhhhhhhhhc
Q psy17899 18 VTQADVGKALANLKLPGVGALSQSTICRFESL 49 (145)
Q Consensus 18 ~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L 49 (145)
.||.||+..+| .|++||+|..+=
T Consensus 1 ~T~~diA~~aG---------VS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAG---------VSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHT---------SCHHHHHHHHHT
T ss_pred CCHHHHHHHHC---------cCHHHHHHHHcC
Confidence 47889888873 678999998763
No 159
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=67.42 E-value=1.9 Score=26.13 Aligned_cols=38 Identities=11% Similarity=0.022 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCcccccc
Q psy17899 98 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPIN 140 (145)
Q Consensus 98 s~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWF 140 (145)
.+++.++.+|.-+|... ....+||+.+|+++.+|+.+.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~ 52 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRV 52 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHH
Confidence 37789999998876443 245789999999999998764
No 160
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=65.14 E-value=3.1 Score=27.70 Aligned_cols=46 Identities=17% Similarity=0.141 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHH-HHhhhcC-CCCC-HHHHHHHHhhcCCCCCccccccC
Q psy17899 96 RTSIAAPEKRSL-EAYFAVQ-PRPS-GEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 96 RTs~s~~q~~~L-e~~F~~n-p~Ps-~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
+..|+++++... ..+.... -+++ ...+.++|..+|++..+|..|-.
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 446888888644 4443322 1333 36788999999999999999953
No 161
>4e1p_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 1.73A {Mycobacterium tuberculosis}
Probab=64.79 E-value=2.9 Score=26.61 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=20.3
Q ss_pred cCCChHHHhhhhHHHHHHHHHH
Q psy17899 49 LTLSHNNMIALKPILQAWLEEA 70 (145)
Q Consensus 49 L~LS~knm~klkPlL~kWL~ea 70 (145)
++||-+|+-+|+-.|..|++.+
T Consensus 34 IDLs~~nA~~lr~~L~~yi~~a 55 (61)
T 4e1p_A 34 IDLSTKNATKLRGDLKQWVAAG 55 (61)
T ss_dssp EEECHHHHHHHHHHHHHHHHHS
T ss_pred EECCHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999854
No 162
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=61.44 E-value=2.8 Score=26.06 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCcccccc
Q psy17899 98 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPIN 140 (145)
Q Consensus 98 s~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWF 140 (145)
.+++.++.+|...|.-... ......+||+.+|+++.+|+.+.
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~ 51 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIE 51 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998852100 11234688999999999998753
No 163
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=61.38 E-value=12 Score=23.39 Aligned_cols=24 Identities=25% Similarity=0.156 Sum_probs=19.5
Q ss_pred cchHHHHHHHhhccCCCCccchhhhhhhhhhcC
Q psy17899 18 VTQADVGKALANLKLPGVGALSQSTICRFESLT 50 (145)
Q Consensus 18 ~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~ 50 (145)
.|+.||+..+ | .|++||+|.++=.
T Consensus 10 ~t~~diA~~a------G---VS~sTVSr~ln~~ 33 (67)
T 2l8n_A 10 ATMKDVALKA------K---VSTATVSRALMNP 33 (67)
T ss_dssp CCHHHHHHHT------T---CCHHHHHHTTTCC
T ss_pred CCHHHHHHHH------C---CCHHHHHHHHcCC
Confidence 6999999886 3 6799999987643
No 164
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=60.90 E-value=2.4 Score=26.05 Aligned_cols=42 Identities=17% Similarity=0.416 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCcccccc
Q psy17899 98 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPIN 140 (145)
Q Consensus 98 s~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWF 140 (145)
.+++.++.+|.-.|.-+.. ......+||+.+|+++.+|+.+.
T Consensus 5 ~L~~~er~il~l~~~l~~~-~g~s~~eIA~~lgis~~tV~~~~ 46 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIE 46 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSS-SCCCHHHHHHHHTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCcCHHHHHHHH
Confidence 4788999999998832111 11334778999999999998653
No 165
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=60.52 E-value=5.4 Score=30.43 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=23.8
Q ss_pred cchHHHHHHHhhccCCCCccchhhhhhh-hhhcCC
Q psy17899 18 VTQADVGKALANLKLPGVGALSQSTICR-FESLTL 51 (145)
Q Consensus 18 ~TQ~dVg~alg~l~~~g~~~fSQttIcR-FE~L~L 51 (145)
-||.++-.+|... |+.+-+|.|||| ...|.+
T Consensus 48 ~TQeEL~~~L~~~---Gi~viTQATvSRDIkELgl 79 (180)
T 3v4g_A 48 GSQGEIVEALKQE---GFENINQSKVSRMLTKFGA 79 (180)
T ss_dssp CSHHHHHHHHHHT---TCTTCCHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHC---CCcccCHHHHHHHHHHcCC
Confidence 4999999999874 775559999998 444443
No 166
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=59.89 E-value=3.6 Score=27.83 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=31.6
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 96 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 96 RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
...+++.++.+|.-.+.-- ...+||+.||+++.+|+.+..
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ 71 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKK 71 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 5669999999998866432 348899999999999987654
No 167
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=59.37 E-value=8.5 Score=27.19 Aligned_cols=47 Identities=9% Similarity=-0.060 Sum_probs=32.0
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHh-h------cCCCCCccccccCc
Q psy17899 96 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAE-K------LDLKKNVVRPINGH 142 (145)
Q Consensus 96 RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~-~------l~L~~~vVrVWFqN 142 (145)
+..+++++...+......+|..+..++...-. . ..++..+|.-|...
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~ 134 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRT 134 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHH
Confidence 45677778888888888888888776654322 1 24677778777643
No 168
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=59.14 E-value=2.5 Score=25.80 Aligned_cols=40 Identities=18% Similarity=0.241 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 96 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 96 RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
-..+++.++.+|.-++. .+ ...+||+.+|++..+|+.+..
T Consensus 9 ~~~L~~~e~~il~~~~~--g~----s~~eIA~~l~is~~tV~~~~~ 48 (74)
T 1fse_A 9 KPLLTKREREVFELLVQ--DK----TTKEIASELFISEKTVRNHIS 48 (74)
T ss_dssp CCCCCHHHHHHHHHHTT--TC----CHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc--CC----CHHHHHHHHCCCHHHHHHHHH
Confidence 45588999999988532 22 456889999999999987653
No 169
>3ej9_B Beta-subunit of trans-3-chloroacrylic acid dehalo; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej7_B 3ej3_B 1s0y_B
Probab=56.21 E-value=12 Score=24.44 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=26.0
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 100 AAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 100 s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
+.+||..|-+ .-...+++.||.+.+.|+||-.
T Consensus 12 T~EQK~~lI~----------~VT~a~~eslgap~esVrVlIt 43 (70)
T 3ej9_B 12 SVARKQQLIR----------DVIDVTNKSIGSDPKIINVLLV 43 (70)
T ss_dssp CHHHHHHHHH----------HHHHHHHHHHCCCGGGCEEEEE
T ss_pred CHHHHHHHHH----------HHHHHHHHHcCCChHHEEEEee
Confidence 4678887765 5567789999999999999854
No 170
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=56.10 E-value=7.3 Score=28.53 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=24.6
Q ss_pred ccchHHHHHHHhhccCCCCccchhhhhhhhhh-cCC
Q psy17899 17 GVTQADVGKALANLKLPGVGALSQSTICRFES-LTL 51 (145)
Q Consensus 17 G~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~-L~L 51 (145)
-.||.+....|... |+ ..||.||+|+=+ |.+
T Consensus 19 ~~tq~eL~~~L~~~---G~-~VtqaTisRDL~eL~~ 50 (149)
T 1b4a_A 19 IETQDELVDRLREA---GF-NVTQATVSRDIKEMQL 50 (149)
T ss_dssp CCSHHHHHHHHHHT---TC-CCCHHHHHHHHHHTTC
T ss_pred CccHHHHHHHHHHc---CC-CcCHHHHHHHHHHcCC
Confidence 57999999999763 76 699999999644 544
No 171
>4e1r_A Protein LSR2; anti-parallel beta sheet, dimer, DNA binding protein; 2.04A {Mycobacterium tuberculosis}
Probab=55.58 E-value=5.1 Score=27.19 Aligned_cols=22 Identities=27% Similarity=0.527 Sum_probs=20.3
Q ss_pred cCCChHHHhhhhHHHHHHHHHH
Q psy17899 49 LTLSHNNMIALKPILQAWLEEA 70 (145)
Q Consensus 49 L~LS~knm~klkPlL~kWL~ea 70 (145)
++||-+|+-||+-.|+.|++-|
T Consensus 59 IDLS~~NA~kLR~aLapyI~aa 80 (86)
T 4e1r_A 59 IDLSTKNATKLRGDLKQWVAAG 80 (86)
T ss_dssp EEECHHHHHHHHHHHHHHHHHS
T ss_pred EECCHHHHHHHHHHHHHHHHhh
Confidence 8999999999999999999854
No 172
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=54.70 E-value=5.8 Score=25.70 Aligned_cols=37 Identities=16% Similarity=0.206 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCcccccc
Q psy17899 99 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPIN 140 (145)
Q Consensus 99 ~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWF 140 (145)
+++.++.+|.-+|... ....+||+.+|++..+|+++.
T Consensus 38 L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l 74 (92)
T 3hug_A 38 LSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRL 74 (92)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHH
Confidence 6788888988865443 246789999999999998764
No 173
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=53.56 E-value=7.3 Score=26.87 Aligned_cols=11 Identities=36% Similarity=0.483 Sum_probs=5.4
Q ss_pred ccchHHHHHHH
Q psy17899 17 GVTQADVGKAL 27 (145)
Q Consensus 17 G~TQ~dVg~al 27 (145)
|.||++|+..|
T Consensus 34 g~tQ~eIA~~l 44 (101)
T 2w7n_A 34 GKPQATFATSL 44 (101)
T ss_dssp CCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 44555554444
No 174
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=53.14 E-value=6.8 Score=30.00 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=19.0
Q ss_pred hcccchHHHHHHHhhccCCCCccchhhhhhhhh
Q psy17899 15 FTGVTQADVGKALANLKLPGVGALSQSTICRFE 47 (145)
Q Consensus 15 ~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE 47 (145)
.-|+||.+++..|| .|+++|+|..
T Consensus 22 ~~g~tQ~eIA~~lG---------iSr~~VSR~L 45 (192)
T 1zx4_A 22 NDGMSQKDIAAKEG---------LSQAKVTRAL 45 (192)
T ss_dssp HTTCCHHHHHHHHT---------CCHHHHHHHH
T ss_pred HcCCCHHHHHHHhC---------cCHHHHHHHH
Confidence 34999999999985 5688999853
No 175
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=52.74 E-value=8.1 Score=28.44 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=20.3
Q ss_pred hhhccc--chHHHHHHHhhccCCCCccch-hhhhhhhhh
Q psy17899 13 VLFTGV--TQADVGKALANLKLPGVGALS-QSTICRFES 48 (145)
Q Consensus 13 Ri~LG~--TQ~dVg~alg~l~~~g~~~fS-QttIcRFE~ 48 (145)
|-..|+ ||.+++.++| .| ++||.+.+.
T Consensus 19 ~~~~g~~ps~~elA~~lg---------iss~~tv~~~~~ 48 (202)
T 1jhf_A 19 ISQTGMPPTRAEIAQRLG---------FRSPNAAEEHLK 48 (202)
T ss_dssp HHHHSSCCCHHHHHHHTT---------CSSHHHHHHHHH
T ss_pred HHHhCCCccHHHHHHHhC---------CCChHHHHHHHH
Confidence 445699 9999999885 34 888887654
No 176
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=52.03 E-value=4.9 Score=25.93 Aligned_cols=42 Identities=10% Similarity=0.298 Sum_probs=29.6
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCcccccc
Q psy17899 98 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPIN 140 (145)
Q Consensus 98 s~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWF 140 (145)
.+++.++.+|.-.|.-... ......+||+.+|+++.+|+.+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~ 59 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIE 59 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHH
Confidence 3678899999888842100 12345678999999999998764
No 177
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=51.71 E-value=6.5 Score=25.88 Aligned_cols=39 Identities=15% Similarity=0.158 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 97 TSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 97 Ts~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
..+++.++.+|.-++.-- ...+||+.+|++..+|+.+..
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~ 64 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVS 64 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHH
Confidence 358899999999875332 347899999999999987643
No 178
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=50.38 E-value=3 Score=24.30 Aligned_cols=39 Identities=13% Similarity=0.071 Sum_probs=26.2
Q ss_pred CCC--HHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 98 SIA--APEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 98 s~s--~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
.++ +++...+...+... . ...+||+.+|++..+|..|..
T Consensus 13 ~l~~~~~~~~~i~~l~~~g-~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 13 YVESEDDLVSVAHELAKMG-Y----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp EECSHHHHHHHHHHHHHTT-C----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHH
Confidence 355 55555544444332 2 366789999999999998875
No 179
>3lap_A Arginine repressor; arginine repressor, DNA binding, DNA-canavanine ternary complex; HET: GGB; 2.15A {Mycobacterium tuberculosis} PDB: 3fhz_A* 3ere_D* 3laj_A*
Probab=49.28 E-value=10 Score=28.43 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=22.7
Q ss_pred cchHHHHHHHhhccCCCCccchhhhhhh-hhhcC
Q psy17899 18 VTQADVGKALANLKLPGVGALSQSTICR-FESLT 50 (145)
Q Consensus 18 ~TQ~dVg~alg~l~~~g~~~fSQttIcR-FE~L~ 50 (145)
-||.++-..|... |+ ..+|.|||| ...|.
T Consensus 35 ~tQeEL~~~L~~~---Gi-~vTQATlSRDikEL~ 64 (170)
T 3lap_A 35 RSQNELAALLAAE---GI-EVTQATLSRDLEELG 64 (170)
T ss_dssp CSHHHHHHHHHHT---TC-CCCHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHc---CC-CcCchhHHHHHHHcC
Confidence 4999999999874 77 479999998 33444
No 180
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=48.91 E-value=6.3 Score=24.32 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCcccccc
Q psy17899 99 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPIN 140 (145)
Q Consensus 99 ~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWF 140 (145)
+++.++.+|.-++.. ....+||+.+|++..+|+.+.
T Consensus 17 L~~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~~ 52 (79)
T 1x3u_A 17 LSERERQVLSAVVAG------LPNKSIAYDLDISPRTVEVHR 52 (79)
T ss_dssp HCHHHHHHHHHHTTT------CCHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHH
Confidence 567788888775322 234688999999999888654
No 181
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=47.13 E-value=4.6 Score=25.86 Aligned_cols=40 Identities=20% Similarity=0.233 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 96 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 96 RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
-..+++.++.+|.-++. .....+||+.+|++..+|+.+..
T Consensus 19 ~~~Lt~~e~~vl~l~~~------g~s~~eIA~~l~is~~tV~~~l~ 58 (82)
T 1je8_A 19 VNQLTPRERDILKLIAQ------GLPNKMIARRLDITESTVKVHVK 58 (82)
T ss_dssp GGGSCHHHHHHHHHHTT------TCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHH
Confidence 44689999999988542 23567899999999999987543
No 182
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=44.21 E-value=13 Score=26.77 Aligned_cols=25 Identities=8% Similarity=0.210 Sum_probs=20.3
Q ss_pred cc-chHHHHHHHhhccCCCCccchhhhhhhhhhcC
Q psy17899 17 GV-TQADVGKALANLKLPGVGALSQSTICRFESLT 50 (145)
Q Consensus 17 G~-TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~ 50 (145)
|+ ||.+++..+| .|++||++.|+=.
T Consensus 19 ~~~tq~elA~~~G---------is~~~i~~~e~g~ 44 (189)
T 2fjr_A 19 GFSQKIQLANHFD---------IASSSLSNRYTRG 44 (189)
T ss_dssp TCSSHHHHHHHTT---------CCHHHHHHHHHSS
T ss_pred hhcCHHHHHHHhC---------cCHHHHHHHHhCC
Confidence 55 9999998874 4799999999844
No 183
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=43.64 E-value=11 Score=25.45 Aligned_cols=41 Identities=10% Similarity=0.252 Sum_probs=30.7
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCc
Q psy17899 97 TSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGH 142 (145)
Q Consensus 97 Ts~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqN 142 (145)
..++.+++......+... . -..+||+.+|++..+|.-|+..
T Consensus 5 ~~~s~~~r~~i~~~~~~G-~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLLN-V----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHTT-C----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHcC-C----CHHHHHHHHCcCHHHHHHHHHc
Confidence 457788877766666432 2 3578899999999999999754
No 184
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A
Probab=43.17 E-value=15 Score=31.70 Aligned_cols=34 Identities=9% Similarity=-0.102 Sum_probs=26.3
Q ss_pred hcccchHHHHHHHhhccCCCCccchhhhhhhhhhcCC
Q psy17899 15 FTGVTQADVGKALANLKLPGVGALSQSTICRFESLTL 51 (145)
Q Consensus 15 ~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L~L 51 (145)
.-.|||.+++..|+... ...+|..||-|+|+-..
T Consensus 27 ~~~~~~~~~a~~l~~~~---~~~~~~~~~~rw~~~~~ 60 (482)
T 3me5_A 27 LQIYDVKMLVAQLNGVG---ENHWSAAILKRALANDS 60 (482)
T ss_dssp HTTSCHHHHHHHHHHTC---SSCCCHHHHHHHHC---
T ss_pred HHHcCHHHHHHHHHhhc---cCCCCHHHHHHHHcCCC
Confidence 33799999999998764 35699999999998744
No 185
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=43.06 E-value=5 Score=25.68 Aligned_cols=20 Identities=20% Similarity=0.388 Sum_probs=17.4
Q ss_pred HHHHHHhhcCCCCCcccccc
Q psy17899 121 KIAAIAEKLDLKKNVVRPIN 140 (145)
Q Consensus 121 e~~~LA~~l~L~~~vVrVWF 140 (145)
.+.++|+.+|++.++||-|=
T Consensus 7 ~i~e~A~~~gvs~~tlR~ye 26 (81)
T 2jml_A 7 RIRTIARMTGIREATLRAWE 26 (81)
T ss_dssp EHHHHHHTTSTTHHHHHHHH
T ss_pred cHHHHHHHHCcCHHHHHHHH
Confidence 46789999999999999884
No 186
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=42.99 E-value=9.8 Score=25.93 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=27.3
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCcccccc
Q psy17899 98 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPIN 140 (145)
Q Consensus 98 s~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWF 140 (145)
.+++.++.++. +|.. .....+||+.+|++..+|+.+.
T Consensus 109 ~L~~~~r~v~~-~~~~-----g~s~~EIA~~lgis~~tV~~~~ 145 (164)
T 3mzy_A 109 NFSKFEKEVLT-YLIR-----GYSYREIATILSKNLKSIDNTI 145 (164)
T ss_dssp HSCHHHHHHHH-HHTT-----TCCHHHHHHHHTCCHHHHHHHH
T ss_pred hCCHHHHHHHH-HHHc-----CCCHHHHHHHHCCCHHHHHHHH
Confidence 56777888888 4432 2356789999999999998754
No 187
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=42.09 E-value=16 Score=25.71 Aligned_cols=41 Identities=12% Similarity=0.176 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCc
Q psy17899 97 TSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGH 142 (145)
Q Consensus 97 Ts~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqN 142 (145)
..++.+++......+... .-..+||+.+|++..+|..|...
T Consensus 24 ~~~s~e~r~~ii~l~~~G-----~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQG-----VRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHHT-----CCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHH
Confidence 468888887666666432 23567899999999999999864
No 188
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=41.50 E-value=20 Score=26.79 Aligned_cols=31 Identities=23% Similarity=0.319 Sum_probs=22.5
Q ss_pred hhhhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhh
Q psy17899 9 VYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFES 48 (145)
Q Consensus 9 f~~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~ 48 (145)
+.++-+..|+||.+|+..+| .|+++|++.=+
T Consensus 44 a~~~L~~~G~t~eeiA~~lG---------~s~s~V~~~Lr 74 (178)
T 1r71_A 44 FIGRELAKGKKKGDIAKEIG---------KSPAFITQHVT 74 (178)
T ss_dssp HHHHHHHTTCCHHHHHHHHT---------CCHHHHHHHHG
T ss_pred HHHHHHHcCCCHHHHHHHHC---------cCHHHHHHHHH
Confidence 34556667999999999885 45778876544
No 189
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=39.78 E-value=81 Score=20.96 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=29.3
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhc----CCCCCHHHHHH----HHhhcCCC
Q psy17899 91 EKKRKRTSIAAPEKRSLEAYFAV----QPRPSGEKIAA----IAEKLDLK 132 (145)
Q Consensus 91 rkrR~RTs~s~~q~~~Le~~F~~----np~Ps~~e~~~----LA~~l~L~ 132 (145)
..++.|+...++.-..|-..+.. +-.||...|.+ ||.++|++
T Consensus 65 ~~kr~r~~~~~~~E~~L~~Wi~~~~~~g~pvs~~~I~~kA~~i~~~~g~~ 114 (131)
T 1hlv_A 65 CRKTNKLSPYDKLEGLLIAWFQQIRAAGLPVKGIILKEKALRIAEELGMD 114 (131)
T ss_dssp TCCCCCCCTTHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHHTCT
T ss_pred hhcccCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 34567788888888888888854 44578877765 45556665
No 190
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=38.16 E-value=10 Score=26.12 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=30.6
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 98 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 98 s~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
.+++.++.++.-+|... ....+||+.+|+++.+|+.|..
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ 60 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIK 60 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHH
Confidence 47788999998876443 3457899999999999988754
No 191
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=37.88 E-value=18 Score=25.79 Aligned_cols=25 Identities=12% Similarity=0.299 Sum_probs=20.8
Q ss_pred HHHHHHHhhcCCCCCccccccCccC
Q psy17899 120 EKIAAIAEKLDLKKNVVRPINGHTR 144 (145)
Q Consensus 120 ~e~~~LA~~l~L~~~vVrVWFqNrR 144 (145)
+-...+|+.+|++.+.+|.|.-..|
T Consensus 70 ~~~~~va~~lg~~~~~~RlW~~~~R 94 (130)
T 2kvr_A 70 EFVQSLSQTMGFPQDQIRLWPMQAR 94 (130)
T ss_dssp HHHHHHHHHHCCCGGGCEEEECCCC
T ss_pred HHHHHHHHHhCCCcccEEEEEeecC
Confidence 4468899999999999999976544
No 192
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=37.41 E-value=8.9 Score=26.87 Aligned_cols=40 Identities=8% Similarity=-0.023 Sum_probs=33.6
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCcc
Q psy17899 102 PEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHT 143 (145)
Q Consensus 102 ~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNr 143 (145)
..+.+-...|....| . -.+.+||+..|+++.+|-..|.|+
T Consensus 19 ~Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK 58 (194)
T 2q24_A 19 KILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTR 58 (194)
T ss_dssp HHHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSH
T ss_pred HHHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCH
Confidence 345566777888888 6 799999999999999999999886
No 193
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=34.57 E-value=72 Score=21.99 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=33.0
Q ss_pred CCCCCCHHHHHHHHHhhh-----cCCCCCHHHHHHHHhhcCCCC
Q psy17899 95 KRTSIAAPEKRSLEAYFA-----VQPRPSGEKIAAIAEKLDLKK 133 (145)
Q Consensus 95 ~RTs~s~~q~~~Le~~F~-----~np~Ps~~e~~~LA~~l~L~~ 133 (145)
+|..+|..|...|...|. .+-+.+..+...+-+.||...
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 467799999999999996 467899999999999998754
No 194
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=34.52 E-value=8.3 Score=28.10 Aligned_cols=39 Identities=8% Similarity=0.166 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCc
Q psy17899 99 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGH 142 (145)
Q Consensus 99 ~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqN 142 (145)
+++.++.+|.-+|.. .....+||+.+|++..+|+.+...
T Consensus 199 L~~~~r~vl~l~~~~-----g~s~~EIA~~lgis~~tV~~~~~r 237 (243)
T 1l0o_C 199 LDERERLIVYLRYYK-----DQTQSEVASRLGISQVQMSRLEKK 237 (243)
T ss_dssp --------------------------------------------
T ss_pred CCHHHHHHHHHHHhc-----CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 567777888776643 356789999999999999987654
No 195
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=34.37 E-value=14 Score=26.20 Aligned_cols=37 Identities=14% Similarity=0.009 Sum_probs=26.7
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCcccccc
Q psy17899 99 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPIN 140 (145)
Q Consensus 99 ~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWF 140 (145)
+++.++.++.-+|... ....+||+.+|+++.+|+.+.
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l 177 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRI 177 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHH
Confidence 4667777777655433 235689999999999998764
No 196
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=34.18 E-value=3.9 Score=26.39 Aligned_cols=38 Identities=8% Similarity=0.127 Sum_probs=23.3
Q ss_pred CHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccc
Q psy17899 100 AAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137 (145)
Q Consensus 100 s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVr 137 (145)
++++...+-.....++--......+||+.||+++..|+
T Consensus 12 ~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~ 49 (77)
T 1qgp_A 12 YQDQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEIN 49 (77)
T ss_dssp HHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHH
Confidence 34443333355666662233445678999999988875
No 197
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=34.18 E-value=15 Score=25.13 Aligned_cols=39 Identities=13% Similarity=0.275 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 98 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 98 s~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
.+++.++.++.-+|... ....+||+.+|+++.+|+++..
T Consensus 25 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ 63 (113)
T 1xsv_A 25 LLTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIR 63 (113)
T ss_dssp GSCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHH
Confidence 36788899988876443 3457899999999999987643
No 198
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=33.61 E-value=18 Score=24.41 Aligned_cols=40 Identities=18% Similarity=0.426 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccc
Q psy17899 99 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPI 139 (145)
Q Consensus 99 ~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVW 139 (145)
+++.++.++.-.|..+.. ......+||+.+|++..+|+..
T Consensus 20 Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~ 59 (99)
T 3t72_q 20 LTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQI 59 (99)
T ss_pred CCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHH
Confidence 567788888888753211 1235678899999999999754
No 199
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=32.74 E-value=5.5 Score=23.42 Aligned_cols=33 Identities=21% Similarity=0.143 Sum_probs=22.3
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 103 EKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 103 q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
++.+|.-++.-. ...+||+.+|+++.+|+.+..
T Consensus 3 e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~~~ 35 (61)
T 2jpc_A 3 ERQVLKLIDEGY------TNHGISEKLHISIKTVETHRM 35 (61)
T ss_dssp HHHHHHHHHTSC------CSHHHHHHTCSCHHHHHHHHH
T ss_pred HHHHHHHHHcCC------CHHHHHHHhCCCHHHHHHHHH
Confidence 555666543322 235899999999999987543
No 200
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A
Probab=32.58 E-value=28 Score=24.04 Aligned_cols=29 Identities=14% Similarity=0.133 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHhhcCCCCCc-----cccccCc
Q psy17899 114 QPRPSGEKIAAIAEKLDLKKNV-----VRPINGH 142 (145)
Q Consensus 114 np~Ps~~e~~~LA~~l~L~~~v-----VrVWFqN 142 (145)
...|+.+||...+.+|||+..+ =+-|+.|
T Consensus 29 V~nP~~~EI~~a~~~Lgl~~~vE~K~yPr~w~~~ 62 (104)
T 1kvn_A 29 VPNVKLHELVEASKELGLKFRAEEKKYPKSWWEE 62 (104)
T ss_dssp CSSCCHHHHHHHHHHHTSSEEECCCTTTCSSCSS
T ss_pred ccCCCHHHHHHHHHHcCCCeEEecCCCCchhhcC
Confidence 3689999999999999998644 3567654
No 201
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=32.28 E-value=21 Score=22.37 Aligned_cols=20 Identities=35% Similarity=0.285 Sum_probs=16.8
Q ss_pred chHHHHHHHhhccCCCCccchhhhhhhhh
Q psy17899 19 TQADVGKALANLKLPGVGALSQSTICRFE 47 (145)
Q Consensus 19 TQ~dVg~alg~l~~~g~~~fSQttIcRFE 47 (145)
||+.++.+|| .||+||++-+
T Consensus 15 sq~~~A~~Lg---------vsq~aVS~~~ 34 (65)
T 2cw1_A 15 NQEYAARALG---------LSQKLIEEVL 34 (65)
T ss_dssp CHHHHHHHSS---------SCHHHHHHHH
T ss_pred CHHHHHHHhC---------CCHHHHHHHH
Confidence 9999999984 5799999866
No 202
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=32.20 E-value=16 Score=26.54 Aligned_cols=37 Identities=16% Similarity=0.203 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCcccccc
Q psy17899 99 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPIN 140 (145)
Q Consensus 99 ~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWF 140 (145)
+++.++.+|.-+|... ....+||+.+|++...|+.+.
T Consensus 188 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~ 224 (239)
T 1rp3_A 188 LPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLK 224 (239)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHH
Confidence 6788899998887543 356788999999999998764
No 203
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=32.05 E-value=19 Score=23.09 Aligned_cols=40 Identities=13% Similarity=-0.031 Sum_probs=29.8
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 96 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 96 RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
-..+++.++.+|.-++.- ....+||+.+|++..+|+.+..
T Consensus 27 l~~Lt~~e~~vl~l~~~g------~s~~eIA~~l~is~~tV~~~l~ 66 (91)
T 2rnj_A 27 YEMLTEREMEILLLIAKG------YSNQEIASASHITIKTVKTHVS 66 (91)
T ss_dssp GGGCCSHHHHHHHHHHTT------CCTTHHHHHHTCCHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHH
Confidence 345788999999886432 2345789999999999987643
No 204
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=32.01 E-value=22 Score=23.17 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=29.2
Q ss_pred CCCCCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccc
Q psy17899 93 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPI 139 (145)
Q Consensus 93 rR~RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVW 139 (145)
...-..+++.++.+|.-... . ....+||+.||+++.+|+..
T Consensus 24 ~~~~~~Lt~rE~~Vl~l~~~--G----~s~~eIA~~L~iS~~TV~~~ 64 (90)
T 3ulq_B 24 QKEQDVLTPRECLILQEVEK--G----FTNQEIADALHLSKRSIEYS 64 (90)
T ss_dssp -----CCCHHHHHHHHHHHT--T----CCHHHHHHHHTCCHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHH
Confidence 34466799999999988762 2 24678999999999999864
No 205
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=30.72 E-value=13 Score=22.83 Aligned_cols=21 Identities=5% Similarity=0.086 Sum_probs=17.8
Q ss_pred HHHHHhhcCCCCCccccccCc
Q psy17899 122 IAAIAEKLDLKKNVVRPINGH 142 (145)
Q Consensus 122 ~~~LA~~l~L~~~vVrVWFqN 142 (145)
..++|+.||+++.+|+-|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 467899999999999999654
No 206
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=30.34 E-value=21 Score=22.69 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHhhhc-----CCCCCHHHHHHHHhhcCCCCCccc
Q psy17899 99 IAAPEKRSLEAYFAV-----QPRPSGEKIAAIAEKLDLKKNVVR 137 (145)
Q Consensus 99 ~s~~q~~~Le~~F~~-----np~Ps~~e~~~LA~~l~L~~~vVr 137 (145)
++..+...+...|.. +-+.+.++...+-..+|++++.++
T Consensus 3 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~ 46 (92)
T 1fi6_A 3 ITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELS 46 (92)
T ss_dssp CCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHH
Confidence 456677777777753 455667777777777777655544
No 207
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=30.21 E-value=17 Score=25.88 Aligned_cols=40 Identities=10% Similarity=0.008 Sum_probs=31.7
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCcc
Q psy17899 103 EKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHT 143 (145)
Q Consensus 103 q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNr 143 (145)
.+.+-...|....|- .-.+.+||+..|+++.+|-..|.|+
T Consensus 33 Il~aa~~lf~~~G~~-~~tv~~IA~~agvs~~t~Y~~F~sK 72 (215)
T 2qko_A 33 LVNAAIEVLAREGAR-GLTFRAVDVEANVPKGTASNYFPSR 72 (215)
T ss_dssp HHHHHHHHHHHTCTT-TCCHHHHHHHSSSTTTCHHHHCSCH
T ss_pred HHHHHHHHHHHhChh-hccHHHHHHHcCCCcchHHHhCCCH
Confidence 345566778777764 4667889999999999999999886
No 208
>1ixs_A Holliday junction DNA helicase RUVA; heterodimeric protein complex, AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ANP; 3.20A {Thermus thermophilus} SCOP: a.5.1.1
Probab=29.75 E-value=27 Score=21.71 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=11.8
Q ss_pred hhcccchHHHHHHHhhc
Q psy17899 14 LFTGVTQADVGKALANL 30 (145)
Q Consensus 14 i~LG~TQ~dVg~alg~l 30 (145)
+.|||++.++-.++..+
T Consensus 25 ~aLGY~~~ea~kav~~v 41 (62)
T 1ixs_A 25 AALGFKEAQARAVVLDL 41 (62)
T ss_dssp HHTTCCHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHH
Confidence 46777777777777643
No 209
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=29.15 E-value=54 Score=26.77 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=29.8
Q ss_pred hcccchHHHHHHHhhccCCCCccchhhh---hhhhhhcCCChHHHhhh
Q psy17899 15 FTGVTQADVGKALANLKLPGVGALSQST---ICRFESLTLSHNNMIAL 59 (145)
Q Consensus 15 ~LG~TQ~dVg~alg~l~~~g~~~fSQtt---IcRFE~L~LS~knm~kl 59 (145)
.+||+.++||.++... |+ .+.++- |..|..|-++..+++++
T Consensus 55 d~Gfs~~~i~~il~~~--P~--il~~~l~~~i~~L~~LGls~e~V~ki 98 (335)
T 4fp9_B 55 DMGFSNAHINELLSVR--RG--ASLQQLLDIISEFILLGLNPEPVCVV 98 (335)
T ss_dssp HTTCCHHHHHHHHHHC--SS--CCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HCCCCHHHHHHHHHhC--cc--cchhHHHHHHHHHHHcCCCHHHHHHH
Confidence 4799999999999874 45 455543 66777788877776653
No 210
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=28.59 E-value=24 Score=22.58 Aligned_cols=41 Identities=22% Similarity=0.289 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHhhh-----cCCCCCHHHHHHHHhhcCCCCCccccc
Q psy17899 99 IAAPEKRSLEAYFA-----VQPRPSGEKIAAIAEKLDLKKNVVRPI 139 (145)
Q Consensus 99 ~s~~q~~~Le~~F~-----~np~Ps~~e~~~LA~~l~L~~~vVrVW 139 (145)
++..+...+...|. .+-+.+..+...+-..+|++++.|+.+
T Consensus 4 ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i 49 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHI 49 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHH
Confidence 45566777777774 346677777777777777776655533
No 211
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=27.40 E-value=41 Score=23.32 Aligned_cols=37 Identities=11% Similarity=0.091 Sum_probs=29.1
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCcccccc
Q psy17899 104 KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPIN 140 (145)
Q Consensus 104 ~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWF 140 (145)
....+..|..+...+.+.+..+|+++|++.+.+.-.+
T Consensus 85 ~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~ 121 (175)
T 3gyk_A 85 EAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDM 121 (175)
T ss_dssp HHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHT
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 3455677888888899999999999999987765444
No 212
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=27.36 E-value=34 Score=20.50 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.1
Q ss_pred hhcccchHHHHHHHhhcc
Q psy17899 14 LFTGVTQADVGKALANLK 31 (145)
Q Consensus 14 i~LG~TQ~dVg~alg~l~ 31 (145)
...||++.||=.||+...
T Consensus 12 ~s~Gf~~~~~~rAL~ia~ 29 (46)
T 2oo9_A 12 MSQGYSYQDIQKALVIAQ 29 (46)
T ss_dssp HHTTBCHHHHHHHHHHTT
T ss_pred HHcCCCHHHHHHHHHHhh
Confidence 567999999999998654
No 213
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=25.89 E-value=48 Score=25.39 Aligned_cols=30 Identities=27% Similarity=0.371 Sum_probs=22.6
Q ss_pred hhhhhcccchHHHHHHHhhccCCCCccchhhhhhhhhhc
Q psy17899 11 SRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESL 49 (145)
Q Consensus 11 ~rRi~LG~TQ~dVg~alg~l~~~g~~~fSQttIcRFE~L 49 (145)
++-+..|+||.+|+..+| .|.++|.+.-+|
T Consensus 128 ~~l~~~g~t~~~iA~~lG---------~s~~~V~~~l~l 157 (230)
T 1vz0_A 128 QALLEMGLTQEEVARRVG---------KARSTVANALRL 157 (230)
T ss_dssp HHHHHTTCCHHHHHHHHT---------CCHHHHHHHHHG
T ss_pred HHHHHcCCCHHHHHHHHC---------cCHHHHHHHHHH
Confidence 344467999999998875 467889887655
No 214
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=25.82 E-value=11 Score=26.07 Aligned_cols=37 Identities=11% Similarity=0.062 Sum_probs=29.8
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCcc
Q psy17899 104 KRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHT 143 (145)
Q Consensus 104 ~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNr 143 (145)
+.+-...|... ..-.+.+||+..|+++.+|-..|.|+
T Consensus 20 l~aA~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK 56 (190)
T 2v57_A 20 LDAAMLVLADH---PTAALGDIAAAAGVGRSTVHRYYPER 56 (190)
T ss_dssp HHHHHHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSH
T ss_pred HHHHHHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCH
Confidence 34455666666 77788999999999999999999886
No 215
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=25.41 E-value=1.1e+02 Score=21.04 Aligned_cols=35 Identities=29% Similarity=0.431 Sum_probs=24.4
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCC
Q psy17899 98 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKN 134 (145)
Q Consensus 98 s~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~ 134 (145)
.++......+|.- +.+.|+...+..||+-+|++.+
T Consensus 40 ~iS~s~is~iE~G--~r~~Ps~~~l~~iA~~f~V~~~ 74 (123)
T 3qwg_A 40 TMSAPYLSQLRSG--NRTNPSGATMAALANFFRIKAA 74 (123)
T ss_dssp CCCHHHHHHHHHT--SSCCCCHHHHHHHHHHTTSCTH
T ss_pred CcCHHHHHHHHcC--CCCCCCHHHHHHHHHHhCCCHH
Confidence 3566666666652 2247899999999999988754
No 216
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=25.19 E-value=47 Score=22.12 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=18.5
Q ss_pred CCCCHHHHHHHHhhcCCCCCc
Q psy17899 115 PRPSGEKIAAIAEKLDLKKNV 135 (145)
Q Consensus 115 p~Ps~~e~~~LA~~l~L~~~v 135 (145)
..|+.+||.+.+++|||+..+
T Consensus 27 ~~P~~~EI~~a~~~lgl~~~~ 47 (87)
T 1lng_A 27 EKPSLKDIEKALKKLGLEPKI 47 (87)
T ss_dssp SSCCHHHHHHHHHHTTCCCEE
T ss_pred cCCCHHHHHHHHHHcCCCeEE
Confidence 689999999999999997643
No 217
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=24.84 E-value=10 Score=24.77 Aligned_cols=32 Identities=9% Similarity=0.129 Sum_probs=19.3
Q ss_pred HHHhhhcCCCCCHHHHHHHHhhcCCCCCcccc
Q psy17899 107 LEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRP 138 (145)
Q Consensus 107 Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrV 138 (145)
+-.....++-=+.-...+||++||+++..|+-
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~ 46 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGTPKKEINR 46 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHH
Confidence 33455555511123345689999999988763
No 218
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=24.71 E-value=43 Score=23.49 Aligned_cols=44 Identities=14% Similarity=0.106 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHhhhcC----CCCCHHHHHHHHhhcCCCCCcc-ccc
Q psy17899 96 RTSIAAPEKRSLEAYFAVQ----PRPSGEKIAAIAEKLDLKKNVV-RPI 139 (145)
Q Consensus 96 RTs~s~~q~~~Le~~F~~n----p~Ps~~e~~~LA~~l~L~~~vV-rVW 139 (145)
.-.++++++..+++.|... -+.+.++...+=.+.+|+.+++ ++|
T Consensus 24 ~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw 72 (121)
T 3fia_A 24 TWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIW 72 (121)
T ss_dssp TSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHH
Confidence 4558999999999999743 4567888888888899987765 355
No 219
>3ov5_A VIRB7 (XAC2622), uncharacterized protein; type IV secretion system component, bacteri membrane, xanthomonas axonopodis PV citri; 1.04A {Xanthomonas axonopodis PV}
Probab=24.51 E-value=23 Score=23.77 Aligned_cols=13 Identities=31% Similarity=0.836 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHH
Q psy17899 59 LKPILQAWLEEAE 71 (145)
Q Consensus 59 lkPlL~kWL~eae 71 (145)
||-+||+|-+|+.
T Consensus 15 lK~mLERWa~ds~ 27 (85)
T 3ov5_A 15 LKTMLERWAADSN 27 (85)
T ss_dssp HHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhcC
Confidence 6889999988754
No 220
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=24.42 E-value=21 Score=26.77 Aligned_cols=41 Identities=12% Similarity=0.082 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCc
Q psy17899 96 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGH 142 (145)
Q Consensus 96 RTs~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqN 142 (145)
...+++.++.+|.-... +..-.+||+.||+++.+|+....|
T Consensus 173 ~~~Lt~~e~~vl~~~~~------g~s~~eIa~~l~is~~tV~~~~~~ 213 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASK------GKTASVTANLTGINARTVQHYLDK 213 (236)
T ss_dssp GGSCCHHHHHHHHHHHT------TCCHHHHHHHHCCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHc------CCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45689999999977542 223477899999999999876543
No 221
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=24.21 E-value=26 Score=24.56 Aligned_cols=39 Identities=13% Similarity=-0.002 Sum_probs=32.5
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCcc
Q psy17899 103 EKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHT 143 (145)
Q Consensus 103 q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNr 143 (145)
.+.+-...|....| . -.+.+||+..|+++.+|-..|.|+
T Consensus 18 Il~aA~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK 56 (196)
T 2qwt_A 18 VLEVAYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTK 56 (196)
T ss_dssp HHHHHHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSH
T ss_pred HHHHHHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCH
Confidence 34555677888887 5 799999999999999999999886
No 222
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=23.63 E-value=84 Score=18.52 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 99 IAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 99 ~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
.+.+|+..|-+.. -..+++.+|++++.|.|-+.
T Consensus 10 rt~eqK~~L~~~i----------t~~~~~~lg~~~~~v~V~i~ 42 (62)
T 3m20_A 10 LDVGKKREFVERL----------TSVAAEIYGMDRSAITILIH 42 (62)
T ss_dssp CCHHHHHHHHHHH----------HHHHHHHHTCCTTSCEEEEE
T ss_pred CCHHHHHHHHHHH----------HHHHHHHhCcCcceEEEEEE
Confidence 4678888876633 45667789999999887664
No 223
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=23.46 E-value=57 Score=19.94 Aligned_cols=25 Identities=16% Similarity=0.199 Sum_probs=19.8
Q ss_pred chhhhhhhhcccchHHHHHHHhhcc
Q psy17899 7 PDVYSRVLFTGVTQADVGKALANLK 31 (145)
Q Consensus 7 ~~f~~rRi~LG~TQ~dVg~alg~l~ 31 (145)
.+.-.+=+.+||++.+|=.||....
T Consensus 12 ~~~Ia~Lm~mGFsr~~ai~AL~~a~ 36 (52)
T 2ooa_A 12 DAKIAKLMGEGYAFEEVKRALEIAQ 36 (52)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhC
Confidence 3444566789999999999998765
No 224
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=23.14 E-value=41 Score=20.69 Aligned_cols=21 Identities=29% Similarity=0.396 Sum_probs=17.3
Q ss_pred hhhhhcccchHHHHHHHhhcc
Q psy17899 11 SRVLFTGVTQADVGKALANLK 31 (145)
Q Consensus 11 ~rRi~LG~TQ~dVg~alg~l~ 31 (145)
.+=+.+||+..+|=.||....
T Consensus 14 ~~L~~lGF~r~~ai~AL~~a~ 34 (53)
T 2d9s_A 14 ERLMSQGYSYQDIQKALVIAH 34 (53)
T ss_dssp HHHHHHTCCHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHhc
Confidence 345678999999999998765
No 225
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=22.58 E-value=47 Score=20.63 Aligned_cols=21 Identities=24% Similarity=0.341 Sum_probs=16.9
Q ss_pred hhhhhcccchHHHHHHHhhcc
Q psy17899 11 SRVLFTGVTQADVGKALANLK 31 (145)
Q Consensus 11 ~rRi~LG~TQ~dVg~alg~l~ 31 (145)
.+=..+||++.||=.||+.-.
T Consensus 12 a~L~smGfsr~da~~AL~ia~ 32 (56)
T 2juj_A 12 ENLMSQGYSYQDIQKALVIAQ 32 (56)
T ss_dssp HHHHTTTCCHHHHHHHHHHTT
T ss_pred HHHHHcCCCHHHHHHHHHHhc
Confidence 344678999999999998754
No 226
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=22.54 E-value=75 Score=20.60 Aligned_cols=48 Identities=13% Similarity=0.133 Sum_probs=37.3
Q ss_pred CCCCCCCCHHHHHHHHHhhh-----cCCCCCHHHHHHHHhhcCC--CCCcccccc
Q psy17899 93 KRKRTSIAAPEKRSLEAYFA-----VQPRPSGEKIAAIAEKLDL--KKNVVRPIN 140 (145)
Q Consensus 93 rR~RTs~s~~q~~~Le~~F~-----~np~Ps~~e~~~LA~~l~L--~~~vVrVWF 140 (145)
.+....++.++...|...|. .+-+.+..|...+-..+|. +++.|+.+|
T Consensus 24 ~~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~ 78 (100)
T 2lv7_A 24 EQRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVII 78 (100)
T ss_dssp TCSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHH
T ss_pred hcccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34567789999999999995 5688999999999998875 455565544
No 227
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=22.08 E-value=17 Score=23.21 Aligned_cols=21 Identities=10% Similarity=-0.001 Sum_probs=18.6
Q ss_pred HHHHHhhcCCCCCccccccCc
Q psy17899 122 IAAIAEKLDLKKNVVRPINGH 142 (145)
Q Consensus 122 ~~~LA~~l~L~~~vVrVWFqN 142 (145)
..+||+.||++...|.-|..+
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhC
Confidence 789999999999999999643
No 228
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=22.02 E-value=46 Score=24.65 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=28.7
Q ss_pred HHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccC
Q psy17899 106 SLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 106 ~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
..-+.|.-+..|+.++...||+-|||+.+.+. |.|
T Consensus 42 ~vtaa~lGQ~~ls~e~A~kLa~~LgL~~e~~~-~l~ 76 (156)
T 1dw9_A 42 FVTAALLGQQALPADAARLVGAKLDLDEDSIL-LLQ 76 (156)
T ss_dssp HHHHHHTTSSCCCHHHHHHHHHHTTCCHHHHH-HTT
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCcCHHHHH-HHh
Confidence 44567778889999999999999999988865 444
No 229
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=21.77 E-value=23 Score=24.68 Aligned_cols=42 Identities=10% Similarity=0.004 Sum_probs=32.2
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCccC
Q psy17899 102 PEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTR 144 (145)
Q Consensus 102 ~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNrR 144 (145)
..+.+-...|....| ..-.+.+||+..|+++.+|-..|.|+-
T Consensus 21 ~Il~aa~~l~~~~G~-~~~ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 21 RISTVGIELFTEQGF-DATSVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHHHCT-TTSCHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHHHcCc-ccCCHHHHHHHhCCCcchHhhhCCCHH
Confidence 344556666777765 445678899999999999999998874
No 230
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=21.61 E-value=36 Score=24.95 Aligned_cols=39 Identities=10% Similarity=0.181 Sum_probs=26.1
Q ss_pred CCCHHHHHHHHHh---hhcCCCCCHHHHHHHHhhcCCCCCcccc
Q psy17899 98 SIAAPEKRSLEAY---FAVQPRPSGEKIAAIAEKLDLKKNVVRP 138 (145)
Q Consensus 98 s~s~~q~~~Le~~---F~~np~Ps~~e~~~LA~~l~L~~~vVrV 138 (145)
.+|..|..+|+-. ...+.+|.+ ..+||+.+|++...|+-
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s--~~eia~~lgl~~~tv~~ 43 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPS--VREIARRFRITPRGALL 43 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCC--HHHHHHHHTSCHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCC--HHHHHHHcCCCcHHHHH
Confidence 3677888877764 344555422 56789999998766653
No 231
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=21.39 E-value=47 Score=20.83 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccc
Q psy17899 98 SIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137 (145)
Q Consensus 98 s~s~~q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVr 137 (145)
.++..+..+|......++.++ ..+||+.+|+++.+|.
T Consensus 18 ~l~~~~~~~l~~l~~~~~~~t---~~ela~~l~is~~tv~ 54 (109)
T 2d1h_A 18 KITDTDVAVLLKMVEIEKPIT---SEELADIFKLSKTTVE 54 (109)
T ss_dssp TCCHHHHHHHHHHHHHCSCEE---HHHHHHHHTCCHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCCCC---HHHHHHHHCcCHHHHH
Confidence 356677777777665454444 5578889999987764
No 232
>2wwb_B SEC61gamma, protein transport protein SEC61 subunit gamma; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=21.32 E-value=44 Score=21.39 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=20.4
Q ss_pred HHHhhhcCCCCCHHHHHHHHhhcCC
Q psy17899 107 LEAYFAVQPRPSGEKIAAIAEKLDL 131 (145)
Q Consensus 107 Le~~F~~np~Ps~~e~~~LA~~l~L 131 (145)
-.+....|.+|+.+|-..+|...++
T Consensus 18 ~~r~lk~~~KPdr~Ef~~iak~~~i 42 (68)
T 2wwb_B 18 SIRLVKRCTKPDRKEFQKIAMATAI 42 (68)
T ss_dssp HHHHHHHCCCCCTHHHHHHHHHSSH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3456678999999999999987764
No 233
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=20.73 E-value=36 Score=25.27 Aligned_cols=48 Identities=25% Similarity=0.344 Sum_probs=24.8
Q ss_pred HHHHHhhccCCCCccchhhhhhhhhhc-CCChHH----H-hhhhHHHHHHHHHHHHH
Q psy17899 23 VGKALANLKLPGVGALSQSTICRFESL-TLSHNN----M-IALKPILQAWLEEAEAQ 73 (145)
Q Consensus 23 Vg~alg~l~~~g~~~fSQttIcRFE~L-~LS~kn----m-~klkPlL~kWL~eae~~ 73 (145)
+...|-.+|-. -..+--+|-....- .-..+. . -+.+|++ .||+|||..
T Consensus 124 ~~~il~~LYd~--DileEe~Il~W~~~~~~~~~~~~~~vr~~~~~Fi-~WL~eAEEE 177 (182)
T 3jui_A 124 MAKVLMAFYQL--EILAGETILSWFSQRDTTDKGQQLRKNQQLQRFI-QWLKEAEEE 177 (182)
T ss_dssp HHHHHHHHHHT--TSSCHHHHHHHHTCCC--CHHHHHTTCHHHHHHH-HHHHHHHC-
T ss_pred HHHHHHHHhhc--chhchHHHHHHHHcCCccccchHHHHHHHHHHHH-HHHhccCcc
Confidence 44455556643 35677777655432 211111 1 2345654 599999854
No 234
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=20.68 E-value=21 Score=26.44 Aligned_cols=43 Identities=7% Similarity=0.118 Sum_probs=27.8
Q ss_pred CCCHHHHHHHHH----hhhcCCCCC-HHHHHHHHhhcCCCCCccccccC
Q psy17899 98 SIAAPEKRSLEA----YFAVQPRPS-GEKIAAIAEKLDLKKNVVRPING 141 (145)
Q Consensus 98 s~s~~q~~~Le~----~F~~np~Ps-~~e~~~LA~~l~L~~~vVrVWFq 141 (145)
.|+.+++..-.. -+. .|+.. .-.+.+||+.||+++.++..|-.
T Consensus 23 ~yt~EfK~aAv~l~~~~~~-~p~~~~~lTv~eIA~~LGIS~~TLyrW~k 70 (155)
T 2ao9_A 23 KLTAKQIQAAYLLVENELM-ESNNEEKRTQDEMANELGINRTTLWEWRT 70 (155)
T ss_dssp TSCHHHHHHHHHHHHHHHC-C---CCCCCHHHHHHHHTCCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHcccc-ccccccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 388888876432 221 11111 24678999999999999988853
No 235
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=20.50 E-value=23 Score=22.93 Aligned_cols=32 Identities=22% Similarity=0.181 Sum_probs=19.8
Q ss_pred HHHHHHhhhcC-CCCCHHHHHHHHhhcCCCCCccc
Q psy17899 104 KRSLEAYFAVQ-PRPSGEKIAAIAEKLDLKKNVVR 137 (145)
Q Consensus 104 ~~~Le~~F~~n-p~Ps~~e~~~LA~~l~L~~~vVr 137 (145)
+..|......+ .+| ....+||+.+|++..+|+
T Consensus 10 L~~I~~~i~~~~g~~--psv~EIa~~lgvS~~TVr 42 (77)
T 2jt1_A 10 ISIVQERQNMDDGAP--VKTRDIADAAGLSIYQVR 42 (77)
T ss_dssp HHHHHHHHHHHTTSC--EEHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhhccCCC--cCHHHHHHHHCCCHHHHH
Confidence 34455554443 344 245677899999877775
No 236
>2fd5_A Transcriptional regulator; DNA-binding protein, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 1.70A {Pseudomonas aeruginosa} SCOP: a.4.1.9 a.121.1.1
Probab=20.19 E-value=53 Score=22.30 Aligned_cols=40 Identities=3% Similarity=-0.145 Sum_probs=30.7
Q ss_pred HHHHHHHhhhcCCCCCHHHHHHHHhhcCCCCCccccccCcc
Q psy17899 103 EKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHT 143 (145)
Q Consensus 103 q~~~Le~~F~~np~Ps~~e~~~LA~~l~L~~~vVrVWFqNr 143 (145)
.+.+-...|....|- .-.+..||+..|+++..|-..|.|+
T Consensus 12 Il~aA~~l~~~~G~~-~~s~~~IA~~agvs~~tly~~F~sK 51 (180)
T 2fd5_A 12 ILGAATQALLERGAV-EPSVGEVMGAAGLTVGGFYAHFQSK 51 (180)
T ss_dssp HHHHHHHHHHHHTTT-SCCHHHHHHHTTCCGGGGGGTCSCH
T ss_pred HHHHHHHHHHHhCcc-cCCHHHHHHHhCCCccHHHHHCCCH
Confidence 344555667776664 3567889999999999999999886
Done!