RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17899
(145 letters)
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 128 bits (323), Expect = 5e-39
Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 8/126 (6%)
Query: 17 GVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKN 76
G TQ DVG A+ L SQ+TI RFE+L LS NM LKP+L+ WL +AEA +
Sbjct: 24 GFTQGDVGLAMGKLYGN---DFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAEANLSS 80
Query: 77 KRR-----DPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDL 131
++P + +++KRTSI + +LE F +P+ E I IAE+L++
Sbjct: 81 DSSLSSPSALNSPGIEGLSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNM 140
Query: 132 KKNVVR 137
+K V+R
Sbjct: 141 EKEVIR 146
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 121 bits (304), Expect = 3e-36
Identities = 53/121 (43%), Positives = 70/121 (57%), Gaps = 6/121 (4%)
Query: 17 GVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKN 76
G TQADVG AL L SQ+TICRFE+L LS NM LKP+L WLEE ++ + +
Sbjct: 30 GFTQADVGLALGTLYGN---VFSQTTICRFEALQLSFKNMCKLKPLLNKWLEETDSSSGS 86
Query: 77 KRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVV 136
G K++KRTSI K +LE++F P+PS +I +A+ L L+K VV
Sbjct: 87 PTNLDKIA---AQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVV 143
Query: 137 R 137
R
Sbjct: 144 R 144
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 119 bits (300), Expect = 1e-35
Identities = 41/121 (33%), Positives = 68/121 (56%), Gaps = 3/121 (2%)
Query: 17 GVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKN 76
G+TQ VG+A+ + P SQS I RFE L ++ + LKP+L+ WL EAE + +
Sbjct: 21 GLTQTQVGQAMTATEGPAY---SQSAISRFEKLDITPKSAQKLKPVLEKWLNEAELRNQE 77
Query: 77 KRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVV 136
+++ +K+++RTS +L AYF P P+G++I +A++L+ + VV
Sbjct: 78 GQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVV 137
Query: 137 R 137
R
Sbjct: 138 R 138
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 118 bits (298), Expect = 2e-35
Identities = 50/121 (41%), Positives = 69/121 (57%), Gaps = 8/121 (6%)
Query: 17 GVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKN 76
G TQ +VG+ALA + SQ+TICRFE+L LS N LK IL WLEEAE
Sbjct: 20 GYTQTNVGEALAAVHGS---EFSQTTICRFENLQLSFKNACKLKAILSKWLEEAEQVGAL 76
Query: 77 KRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVV 136
A K+++RT+I+ K +LE +F +PS ++I +AE+L+L+K VV
Sbjct: 77 YNEKVGAN-----ERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVV 131
Query: 137 R 137
R
Sbjct: 132 R 132
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 112 bits (280), Expect = 1e-32
Identities = 52/121 (42%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 17 GVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKN 76
G TQADVG L L SQ+TI RFE+L LS NM L+P+L+ W+EEA+
Sbjct: 27 GYTQADVGLTLGVLFGK---VFSQTTISRFEALQLSLKNMSKLRPLLEKWVEEADNNENL 83
Query: 77 KRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVV 136
+ V +KRKRTSI + SLE F P+PS ++I IA +L L+K+VV
Sbjct: 84 QEISKSETLVQA---RKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVV 140
Query: 137 R 137
R
Sbjct: 141 R 141
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 52.3 bits (126), Expect = 2e-10
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
KR RT I + R L YF + PS E+I +A+K L + V++
Sbjct: 5 SSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIK 52
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 52.6 bits (125), Expect = 1e-09
Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 17/139 (12%)
Query: 8 DVYSRVLFTGVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPI---LQ 64
+ + + + QA + + SQ T+ + + + + +
Sbjct: 12 RITTELKRYSIPQAIFAQRVLCR--------SQGTLSDLLRNPKPWSKLKSGRETFRRMW 63
Query: 65 AWLEEAEAQAKNKRRDPDAPSVLPAG------EKKRKRTSIAAPEKRSLEAYFAVQPRPS 118
WL+E E Q + R K+ R ++R+L A F RPS
Sbjct: 64 KWLQEPEFQRMSALRLAACKRKEQEHGKDRGNTPKKPRLVFTDVQRRTLHAIFKENKRPS 123
Query: 119 GEKIAAIAEKLDLKKNVVR 137
E I+++L L+ + V
Sbjct: 124 KELQITISQQLGLELSTVS 142
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 47.1 bits (112), Expect = 2e-08
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 89 AGEKKRKRTSIAAPEKRSLEAYFA-VQPRPSGEKIAAIAEKLDLKKNVVR 137
R RT I+ L+++ V P E I ++ +LDL K+ +
Sbjct: 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTII 53
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 40.4 bits (94), Expect = 7e-06
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 105 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
L+AY+A+ +PS E+++ IA+ ++L +VV+
Sbjct: 16 SLLKAYYALNAQPSAEELSKIADSVNLPLDVVK 48
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 80
Score = 37.9 bits (88), Expect = 1e-04
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 80 DPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
KR RT+I + L + + P+ + + IA ++ LKK VV+
Sbjct: 5 SSGGTGGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQ 62
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 35.2 bits (80), Expect = 0.003
Identities = 15/117 (12%), Positives = 37/117 (31%), Gaps = 12/117 (10%)
Query: 37 ALSQSTICRF---------ESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPDAPSVL 87
L+QS + + + + + + + A + D
Sbjct: 54 GLNQSHLSQHLNKGTPMKTQKRAALYTWYVRKQREVAQQFTHAGQGGLIEEPTGDEL--- 110
Query: 88 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTR 144
P + +R R ++ L + Q PS E+ + E+ + + + R ++
Sbjct: 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQA 167
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein,
homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP:
a.4.1.1
Length = 66
Score = 33.1 bits (76), Expect = 0.004
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
R RT + + +L +A PRP + E L V+R
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 32.7 bits (75), Expect = 0.007
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVV 136
+ RT + R L+ +F P ++ ++ L+L V+
Sbjct: 7 GRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVI 51
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 33.4 bits (75), Expect = 0.014
Identities = 15/71 (21%), Positives = 29/71 (40%)
Query: 69 EAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEK 128
E Q+ + DA S + +R R ++ L + Q PS E+ A+ E+
Sbjct: 119 EFSQQSHGPGQSDDACSEPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEE 178
Query: 129 LDLKKNVVRPI 139
+ + + R +
Sbjct: 179 CNRAECLQRGV 189
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 31.3 bits (70), Expect = 0.019
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 105 RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
L+AY+A+ P+ +++ I+ + L + V+
Sbjct: 18 SVLKAYYAMNMEPNSDELLKISIAVGLPQEFVK 50
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 30.5 bits (69), Expect = 0.032
Identities = 6/48 (12%), Positives = 15/48 (31%)
Query: 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
+ L+A F P ++ + E L ++ ++
Sbjct: 2 AHHHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIK 49
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 30.5 bits (69), Expect = 0.045
Identities = 9/55 (16%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 83 APSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPR-PSGEKIAAIAEKLDLKKNVV 136
S G K +LE F + P +++ ++++LD +
Sbjct: 1 GSSGSSGGIKDSPVNK--VEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKI 53
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB:
1f43_A 1yrn_A*
Length = 61
Score = 29.9 bits (68), Expect = 0.055
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 91 EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDL 131
+ + ++SI+ + LE F + + ++ +A+K +
Sbjct: 4 KSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGI 44
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 30.1 bits (68), Expect = 0.059
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
KR RTS + R++++YFA+ P + + +A+K L K V++
Sbjct: 7 GKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQ 52
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 29.9 bits (67), Expect = 0.073
Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 89 AGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
+G K K + + R+LE+ FA P P E++ + + + + +
Sbjct: 6 SGPTKYKERA--PEQLRALESSFAQNPLPLDEELDRLRSETKMTRREID 52
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 29.7 bits (67), Expect = 0.077
Identities = 6/50 (12%), Positives = 16/50 (32%)
Query: 88 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
+ + + + +L+ F P ++ + + L VR
Sbjct: 4 GSSGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVR 53
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 29.2 bits (65), Expect = 0.16
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 92 KKRKRTSIAAPEK-RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
+K K + E+ R L+A F + E++ + + L + +
Sbjct: 13 QKFKEKT---AEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID 56
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 28.8 bits (63), Expect = 0.19
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 90 GEKKRKRTSIAAPEKRSLEAYF----AVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTRA 145
+ RT + + +L+ Y+ EKI A+A +L++ +VR G+ R
Sbjct: 6 SGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRR 65
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A
{Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 28.3 bits (62), Expect = 0.47
Identities = 10/51 (19%), Positives = 21/51 (41%)
Query: 88 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRP 138
P + +R R ++ L + Q PS E+ + E+ + + + R
Sbjct: 5 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRG 55
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL
conjugation pathway, DNA damage, nucleus,
phosphoprotein; HET: 1PE; 2.40A {Saccharomyces
cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Length = 968
Score = 29.3 bits (65), Expect = 0.49
Identities = 7/46 (15%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 38 LSQSTICRFESLTLSHNNMI---ALKPILQAWLEEAEAQAKNKRRD 80
L + F + L ++ L+ + + ++ + +AK+K +
Sbjct: 923 LLSDSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKEEAKHKASE 968
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.2 bits (65), Expect = 0.55
Identities = 27/171 (15%), Positives = 54/171 (31%), Gaps = 50/171 (29%)
Query: 7 PDVYSRVL-FTG--VTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNN-------- 55
++ + L + V + VG+ L L + FE+ L N+
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNL---------CLTEFENCYLEGNDIHALAAKL 108
Query: 56 -------MIALKPILQAWLEEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAA------- 101
++ K +++ ++ A AK ++ A + + + A
Sbjct: 109 LQENDTTLVKTKELIKNYI-TARIMAKRPFDKKSNSALFRAVGEGNAQ--LVAIFGGQGN 165
Query: 102 -----PEKRSL-EAYFAVQPRPS-GEKIAAIAEKL-DLKKNVVRPINGHTR 144
E R L + Y G+ I AE L +L + + T+
Sbjct: 166 TDDYFEELRDLYQTY-----HVLVGDLIKFSAETLSELIRTTLDAEKVFTQ 211
Score = 26.6 bits (58), Expect = 4.7
Identities = 11/65 (16%), Positives = 17/65 (26%), Gaps = 16/65 (24%)
Query: 33 PGVGALSQSTICRFESLTLSHNNMIALKPI---LQAWLEEAEAQAKNKRRDPD------A 83
VG L + + L + + + + WLE PD
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNT-------PDKDYLLSI 234
Query: 84 PSVLP 88
P P
Sbjct: 235 PISCP 239
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor,
structural genomics, loop insertion, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 95
Score = 27.7 bits (61), Expect = 0.73
Identities = 8/43 (18%), Positives = 13/43 (30%)
Query: 88 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLD 130
+ R + +E+YF P K IA +
Sbjct: 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACN 45
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 27.1 bits (59), Expect = 1.0
Identities = 9/68 (13%), Positives = 20/68 (29%)
Query: 70 AEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKL 129
+ + P K + L++ F PS E+ +A++
Sbjct: 3 HHHHHHSSGLEVLFQGPAPKSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKES 62
Query: 130 DLKKNVVR 137
L + +
Sbjct: 63 GLARTDIV 70
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping;
HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP:
a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A*
1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Length = 543
Score = 28.2 bits (63), Expect = 1.1
Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 9/66 (13%)
Query: 68 EEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKR--------SLEAYFAVQPRPSG 119
E+ AK + P P E + + PE R L F+V R +G
Sbjct: 100 EQITLMAKYIQHTPPQPPEWGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAG 159
Query: 120 EKIAAI 125
+ IA +
Sbjct: 160 Q-IALV 164
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase,
denitrification, electron transport, periplasmic; HET:
HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2
b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A*
1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Length = 567
Score = 28.2 bits (63), Expect = 1.2
Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 68 EEAEAQAKNKRRDPDAPSVLPAGEKKRKRTSIAAPEKR--------SLEAYFAVQPRPSG 119
E+ + A DP AP E + APE R LE F+V R +G
Sbjct: 118 EQVDLMANYLLLDPAAPPEFGMKEMRESWKVHVAPEDRPTQQMNDWDLENLFSVTLRDAG 177
Query: 120 EKIAAI 125
+ IA I
Sbjct: 178 Q-IALI 182
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 26.5 bits (58), Expect = 1.7
Identities = 7/47 (14%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 92 KKRKRTSIAAPEK-RSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
+K K + + + LE F P+ ++ + + L + +
Sbjct: 15 QKFKEKT---QGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREID 58
>2iak_A Bullous pemphigoid antigen 1, isoform 5; triple helical bundle,
spectrin repeat, cell adhesion; 3.00A {Mus musculus}
Length = 224
Score = 27.3 bits (60), Expect = 1.8
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
Query: 63 LQAWLEEAEAQAKNKRRDPDAPSVLPAGEK-KRKRTSIAAPEKRSLEAYFAVQPRPSGEK 121
L W++E + Q D PSV E K +I + SL+ + + +
Sbjct: 32 LLNWVDEMQVQLDRTEWGSDLPSVESHLENHKNVHRAIEE-FESSLKEAKISEIQMTAPL 90
Query: 122 IAAIAEKLD 130
+ +KL
Sbjct: 91 KLSYTDKLH 99
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 64
Score = 25.5 bits (56), Expect = 2.5
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 90 GEKKRKRTSIAAPEKRSLEAYFAVQ-PRPSGEKIAAIAEKLDL 131
G T A LE F P +++ ++++LD
Sbjct: 1 GSSGSSGT---AQPNAILEKVFTAITKHPDEKRLEGLSKQLDW 40
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A
{Pyrococcus furiosus}
Length = 347
Score = 26.8 bits (59), Expect = 3.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 111 FAVQPRPSGEKIAAIAEKLDLKKN 134
+ PR GE +A + K +LK N
Sbjct: 16 YLSDPRTKGELVAYVLTKANLKDN 39
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 76
Score = 24.2 bits (52), Expect = 7.7
Identities = 5/47 (10%), Positives = 13/47 (27%)
Query: 90 GEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVV 136
G + L+++F E + + L + +
Sbjct: 1 GSSGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEI 47
>2awi_A PRGX; repressor, pheromone, DNA binding, regulatory domain,
transcription; 2.25A {Enterococcus faecalis} SCOP:
a.35.1.11 a.118.8.4 PDB: 2axv_A 2axu_A 2aw6_A 2axz_A
2grl_A 2grm_A
Length = 317
Score = 25.4 bits (55), Expect = 7.8
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 12/45 (26%)
Query: 17 GVTQADVGKALANLKLPGVGALSQSTICRFES--LTLSHNNMIAL 59
Q D+ G +S+S + E+ +S +
Sbjct: 16 NYHQIDLYS----------GIMSKSVYIKVEADSRPISVEELSKF 50
>3pdy_A Plectin; cytoskeleton, plakin, intermediate filament, spectrin
repeat structural protein, crosslinking; 2.22A {Homo
sapiens}
Length = 210
Score = 25.3 bits (55), Expect = 8.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 63 LQAWLEEAEAQAKNKRRDPDAPSV 86
L AW+EE + + D PSV
Sbjct: 17 LLAWVEENQHRVDGAEWGVDLPSV 40
>2oqm_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 1.83A {Shewanella denitrificans} SCOP: a.213.1.3
Length = 192
Score = 24.9 bits (54), Expect = 9.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 63 LQAWLEEAEAQAKNKRRDPDA 83
L A ++AEA A+ K+ D D
Sbjct: 36 LNAIFDKAEAFAELKKVDMDV 56
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion,
desmosome; 2.95A {Homo sapiens}
Length = 450
Score = 25.4 bits (55), Expect = 9.5
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 63 LQAWLEEAEAQAKNKRRDPDAPSV 86
W+ + A+ D SV
Sbjct: 14 CLGWMRQQRAEMDMVAWGVDLASV 37
>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET:
SEP; 2.15A {Homo sapiens}
Length = 219
Score = 24.9 bits (54), Expect = 9.7
Identities = 29/136 (21%), Positives = 44/136 (32%), Gaps = 17/136 (12%)
Query: 7 PDVYSRVLFTGVTQADVGKALANLKLPG---VGALSQSTICRFESLTLSHNNMIAL---K 60
P++ VLFTG V + + L + G + + T +T + + A+ K
Sbjct: 13 PELTPFVLFTGFEPVQVQQYIKKLYILGGEVAESAQKCTHLIASKVTRTVKFLTAISVVK 72
Query: 61 PIL-QAWLEEAEAQAKNKRRDPDAPSVL-PAGEKKRK---RTSIAAPEKRSL----EAYF 111
I+ WLEE K D + E S+ L Y
Sbjct: 73 HIVTPEWLEECFRC--QKFIDEQNYILRDAEAEVLFSFSLEESLKRAHVSPLFKAKYFYI 130
Query: 112 AVQPRPSGEKIAAIAE 127
PS + AI E
Sbjct: 131 TPGICPSLSTMKAIVE 146
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.130 0.367
Gapped
Lambda K H
0.267 0.0587 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,162,307
Number of extensions: 117731
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 394
Number of HSP's successfully gapped: 51
Length of query: 145
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 60
Effective length of database: 4,328,508
Effective search space: 259710480
Effective search space used: 259710480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.1 bits)