RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17899
(145 letters)
>d1au7a2 a.35.1.1 (A:5-76) Pit-1 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 72
Score = 85.2 bits (211), Expect = 1e-23
Identities = 30/55 (54%), Positives = 35/55 (63%), Gaps = 3/55 (5%)
Query: 17 GVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAE 71
G TQ +VG+ALA + SQ+TICRFE+L LS N LK IL WLEEAE
Sbjct: 20 GYTQTNVGEALAAVHGS---EFSQTTICRFENLQLSFKNACKLKAILSKWLEEAE 71
>d1e3oc2 a.35.1.1 (C:1-75) Oct-1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 75
Score = 76.8 bits (189), Expect = 3e-20
Identities = 28/55 (50%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 17 GVTQADVGKALANLKLPGVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAE 71
G TQ DVG A+ L SQ+TI RFE+L LS NM LKP+L+ WL +AE
Sbjct: 24 GFTQGDVGLAMGKLY---GNDFSQTTISRFEALNLSFKNMSKLKPLLEKWLNDAE 75
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 38.3 bits (89), Expect = 2e-05
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 80 DPDAPSVLPAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
+P A L A ++KR + LE F + ++ +A L+L + V+
Sbjct: 2 NPAANW-LHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVK 58
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 38.0 bits (88), Expect = 2e-05
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
++R RT+ +A + LE F P +A++ +L + ++
Sbjct: 2 QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQ 47
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 36.7 bits (85), Expect = 6e-05
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
R RT + + +L +A PRP + E L V+R
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIR 48
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 36.1 bits (83), Expect = 1e-04
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 93 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
+R+RT + + + LEA F P IA +L + VR
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVR 46
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 35.2 bits (81), Expect = 2e-04
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 93 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
++KR + + R LE +A + +K I+ L + +
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQIT 46
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 35.4 bits (81), Expect = 3e-04
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 88 PAGEKKRKRTSIAAPEKRSLEAYFA----VQPRPSGEKIAAIAEKLDLKKNVVR 137
G KR RT A +K + A+ + + + +++ V++
Sbjct: 13 SGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLK 66
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 35.4 bits (81), Expect = 3e-04
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 75 KNKRRDPDAPSVLPAG--EKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLK 132
K KR P V G RT+ + LE F S + IA L+L
Sbjct: 8 KVKRNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELN 67
Query: 133 KNVVR 137
+ V+
Sbjct: 68 ETQVK 72
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 34.5 bits (79), Expect = 5e-04
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
++++R + + LE F Q S + +A + L V+
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVK 47
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens)
[TaxId: 9606]}
Length = 57
Score = 34.0 bits (78), Expect = 5e-04
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 93 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
K + + + LE F Q S + +A+ L L + V+
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVK 45
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 33.7 bits (77), Expect = 7e-04
Identities = 18/44 (40%), Positives = 31/44 (70%)
Query: 94 RKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
++RT+I+ K +LE +F +PS ++I +AE+L+L+K VVR
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVR 44
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 33.8 bits (77), Expect = 7e-04
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 95 KRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVV 136
KRTSI + +LE F +P+ E I IAE+L+++K V+
Sbjct: 1 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVI 42
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 34.0 bits (78), Expect = 8e-04
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 93 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
+R RTS + +LE F P +A K+DL + ++
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQ 46
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 33.6 bits (77), Expect = 0.001
Identities = 9/49 (18%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 92 KKRKRTSIAAPEKRSLEAYFAVQ---PRPSGEKIAAIAEKLDLKKNVVR 137
K KR + + ++ P P+ ++ IA + +L V
Sbjct: 2 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVN 50
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 33.4 bits (76), Expect = 0.001
Identities = 23/46 (50%), Positives = 31/46 (67%)
Query: 92 KKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
+KRKRTSI + SLE F P+PS ++I IA +L L+K+VVR
Sbjct: 8 RKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVR 53
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 33.0 bits (75), Expect = 0.002
Identities = 10/44 (22%), Positives = 21/44 (47%)
Query: 94 RKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
R RT+ + LE F + S + +A +L+L ++ ++
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIK 44
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster
[TaxId: 7227]}
Length = 53
Score = 32.5 bits (74), Expect = 0.002
Identities = 7/44 (15%), Positives = 20/44 (45%)
Query: 94 RKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
R RT+ ++ + L+ F + + ++ +L L + ++
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIK 44
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 31.4 bits (71), Expect = 0.005
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 93 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
++ RT + +LE F + S + A + L L + V+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 45
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 31.6 bits (71), Expect = 0.007
Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 89 AGEKKRKRTSIAAPEKRSLEAYFA-VQPRPSGEKIAAIAEKLDLKKNVV 136
R RT I+ L+++ V P E I ++ +LDL K+ +
Sbjct: 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTI 52
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 31.6 bits (71), Expect = 0.007
Identities = 8/44 (18%), Positives = 12/44 (27%)
Query: 94 RKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
R + +E+YF P K IA +
Sbjct: 2 GSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPG 45
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 31.6 bits (71), Expect = 0.008
Identities = 9/44 (20%), Positives = 17/44 (38%)
Query: 88 PAGEKKRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDL 131
+K+++R + LE F Q S + +A + L
Sbjct: 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRL 48
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 31.1 bits (70), Expect = 0.009
Identities = 11/45 (24%), Positives = 22/45 (48%)
Query: 93 KRKRTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
+R RT+ + + LE +F + ++A ++ KL L V+
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVK 46
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 30.6 bits (69), Expect = 0.009
Identities = 9/42 (21%), Positives = 20/42 (47%)
Query: 96 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
++SI+ + LE F + + ++ +A+K + VR
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVR 42
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 50
Score = 30.2 bits (68), Expect = 0.011
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 96 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
R ++R+L A F RPS E I+++L L+ + V
Sbjct: 2 RLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVS 43
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 29.7 bits (66), Expect = 0.038
Identities = 8/49 (16%), Positives = 19/49 (38%)
Query: 96 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVRPINGHTR 144
R ++ L + Q PS E+ + E+ + + + R ++
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQA 49
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 29.0 bits (65), Expect = 0.040
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 96 RTSIAAPEKRSLEAYFAVQPRPSGEKIAAIAEKLDLKKNVVR 137
R + + LE F + + IA L L + ++
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIK 42
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 28.0 bits (62), Expect = 0.12
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 93 KRKRTSIAAPEKRSLEAYFA---VQPRPSGEKIAAIAEKLDLKKNVVR 137
+RKR + L YF P PS E +A+K + + V
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVS 49
>d1kfia4 d.129.2.1 (A:444-572) Exocytosis-sensitive phosphoprotein,
pp63/parafusin {Paramecium tetraurelia [TaxId: 5888]}
Length = 129
Score = 27.4 bits (61), Expect = 0.47
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 34 GVGALSQSTICRFESLTLSHNNMIALKPILQAWLEEAEAQAKNKRRDPD 82
VGA + +FE + H AL I++ LE ++ R +P
Sbjct: 78 SVGATIRIYFEQFEQQQIQHETATALANIIKLGLEISDIAQFTGRNEPT 126
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 25.9 bits (57), Expect = 0.49
Identities = 8/48 (16%), Positives = 19/48 (39%), Gaps = 5/48 (10%)
Query: 93 KRKRTSIAAPEKRSLEAYFAVQ---PRPSGEKIAAIAEKLDLKKNVVR 137
+ R + R LE++FA P + + + + L + ++
Sbjct: 1 RGHRFT--KENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIK 46
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes
[TaxId: 1639]}
Length = 384
Score = 27.3 bits (59), Expect = 0.72
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 27 LANLKLPGVGALSQSTICRFESLTLSHNNMIALKPI 62
AN K+ V +L+ T L+ HN + L P+
Sbjct: 336 FANNKVSDVSSLANLT--NINWLSAGHNQISDLTPL 369
Score = 27.3 bits (59), Expect = 0.84
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 18 VTQADVGKALANLKLPGVGALSQSTICRFESLT---LSHNNMIALKPI 62
V+Q D+ + + L+ +G S + +LT S+N + + P+
Sbjct: 38 VSQTDLDQ-VTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPL 84
>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human
(Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 24.4 bits (52), Expect = 3.3
Identities = 8/36 (22%), Positives = 11/36 (30%)
Query: 41 STICRFESLTLSHNNMIALKPILQAWLEEAEAQAKN 76
R LK +Q WL E + Q+
Sbjct: 60 DPFNRSPLTMDQIRPNTELKEKIQRWLAERKQQSGP 95
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 23.8 bits (51), Expect = 3.8
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 93 KRKRTSIAAPEKRSLEAYFAVQPR-PSGEKIAAIAEKLDL 131
++ + LE F + P + IA + L
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGL 41
>d2oqma1 a.213.1.3 (A:1-171) Hypothetical protein Sden0562
{Shewanella denitrificans [TaxId: 192073]}
Length = 171
Score = 24.5 bits (53), Expect = 5.3
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 63 LQAWLEEAEAQAKNKRRDPDA 83
L A ++AEA A+ K+ D D
Sbjct: 17 LNAIFDKAEAFAELKKVDMDV 37
>d1p4ea1 a.60.9.1 (A:2-129) Flp recombinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 128
Score = 23.6 bits (50), Expect = 8.3
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 102 PEKRSLEAYFAVQPRPSGEKIAAIAEKL 129
P K + + RPSGEKIA+ A +L
Sbjct: 10 PPKVLVRQFVERFERPSGEKIASCAAEL 37
>d2vqca1 a.4.5.78 (A:4-73) F-112 {Sulfolobus virus-like particle
SSV1 [TaxId: 244589]}
Length = 70
Score = 22.7 bits (48), Expect = 9.1
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 40 QSTICRFE-SLTLSHNNMIALKPILQAWLEEAEAQAKNKR 78
+ + +FE S+ ++N ALK I + +E E Q KN++
Sbjct: 24 EDILAQFEISVPSAYNIQRALKAICERHPDECEVQYKNRK 63
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.367
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 503,031
Number of extensions: 20341
Number of successful extensions: 93
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 41
Length of query: 145
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,350,386
Effective search space: 91826248
Effective search space used: 91826248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (22.8 bits)