Query psy179
Match_columns 359
No_of_seqs 290 out of 1908
Neff 4.7
Searched_HMMs 46136
Date Fri Aug 16 16:58:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy179.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/179hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1212|consensus 99.8 8E-21 1.7E-25 196.9 12.9 120 179-350 439-559 (560)
2 PRK06170 amidase; Provisional 99.8 7.4E-18 1.6E-22 172.3 14.7 112 158-349 364-489 (490)
3 PRK06169 putative amidase; Pro 99.7 1.9E-17 4.2E-22 168.4 12.7 109 158-347 345-460 (466)
4 PRK06102 hypothetical protein; 99.7 3.2E-17 6.9E-22 166.4 12.9 106 158-344 338-451 (452)
5 PRK07042 amidase; Provisional 99.7 3.5E-17 7.6E-22 166.5 12.6 84 158-244 342-431 (464)
6 PRK07488 indole acetimide hydr 99.7 7.8E-17 1.7E-21 164.3 14.0 110 159-348 349-471 (472)
7 PRK07056 amidase; Provisional 99.7 7.3E-17 1.6E-21 163.9 13.0 106 158-344 340-453 (454)
8 PRK07235 amidase; Provisional 99.7 5.9E-17 1.3E-21 167.0 11.2 82 159-244 391-480 (502)
9 TIGR00132 gatA glutamyl-tRNA(G 99.7 1E-16 2.2E-21 162.6 11.3 80 162-244 357-440 (460)
10 COG0154 GatA Asp-tRNAAsn/Glu-t 99.7 2.5E-16 5.4E-21 161.7 13.4 172 75-346 282-471 (475)
11 PRK07486 amidase; Provisional 99.7 1.9E-16 4.2E-21 161.9 12.1 84 158-244 357-450 (484)
12 PRK05962 amidase; Validated 99.7 3.8E-16 8.3E-21 157.4 12.8 82 158-244 311-400 (424)
13 PRK00012 gatA aspartyl/glutamy 99.7 1.8E-16 4E-21 160.8 10.1 80 162-244 358-441 (459)
14 PRK07487 amidase; Provisional 99.7 5.8E-16 1.2E-20 158.0 12.8 108 158-346 347-461 (469)
15 PRK08186 allophanate hydrolase 99.7 3.9E-16 8.5E-21 164.2 11.6 150 74-244 272-427 (600)
16 PRK07869 amidase; Provisional 99.7 5.3E-16 1.2E-20 157.9 11.9 81 161-244 351-441 (468)
17 TIGR02713 allophanate_hyd allo 99.7 4.3E-16 9.2E-21 162.9 11.3 150 74-244 235-390 (561)
18 PRK06061 amidase; Provisional 99.7 7.3E-16 1.6E-20 157.9 12.7 84 158-244 355-447 (483)
19 PRK06529 amidase; Provisional 99.6 6.9E-16 1.5E-20 157.7 11.6 84 158-244 345-457 (482)
20 PRK08310 amidase; Provisional 99.6 8.8E-16 1.9E-20 153.5 11.9 83 158-244 286-373 (395)
21 PRK08137 amidase; Provisional 99.6 1.7E-15 3.8E-20 155.3 14.1 111 158-349 377-489 (497)
22 PRK07139 amidase; Provisional 99.6 1.2E-15 2.6E-20 154.7 12.0 79 162-244 332-412 (439)
23 TIGR02715 amido_AtzE amidohydr 99.6 2.6E-15 5.7E-20 152.3 12.2 82 159-244 337-427 (452)
24 PLN02722 indole-3-acetamide am 99.6 1.4E-15 3E-20 153.9 10.0 83 158-244 314-401 (422)
25 PRK09201 amidase; Provisional 99.6 2.7E-15 5.8E-20 153.0 11.2 82 159-244 344-434 (465)
26 PRK12470 amidase; Provisional 99.6 4.2E-15 9.2E-20 151.5 12.6 82 160-244 341-431 (462)
27 PF01425 Amidase: Amidase; In 99.6 1.3E-15 2.8E-20 147.8 4.7 154 74-244 258-430 (441)
28 PRK06828 amidase; Provisional 99.3 7E-12 1.5E-16 129.4 11.7 96 158-348 391-488 (491)
29 PRK06707 amidase; Provisional 99.2 6.1E-11 1.3E-15 123.8 11.7 92 162-349 442-535 (536)
30 PRK11910 amidase; Provisional 99.1 4E-10 8.7E-15 119.5 13.8 84 173-350 528-614 (615)
31 PRK06565 amidase; Validated 98.9 5.2E-09 1.1E-13 110.2 12.1 95 180-351 457-563 (566)
32 KOG1211|consensus 98.6 8.8E-08 1.9E-12 99.6 7.7 62 183-244 409-474 (506)
No 1
>KOG1212|consensus
Probab=99.84 E-value=8e-21 Score=196.88 Aligned_cols=120 Identities=40% Similarity=0.580 Sum_probs=90.1
Q ss_pred HHHHHHhcCCCEEEeCCCCCCcccCccccccccccccchhhhhcCCCeEEecCCcCCCCCceeEEEeecccccccccccc
Q psy179 179 FGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFV 258 (359)
Q Consensus 179 ~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~~~~~~~yT~~~NlLGlPAISVPvG~~~dGLPVGVQL~~~~~~~~~~~~~~ 258 (359)
........+.||||||++|++||+|+.+.....++.||++||++|+||.+||++......-. +
T Consensus 439 ~~~~~~~~~~dVll~Ps~~~pA~~h~~P~~~~~~~~Yt~LfN~Ld~Pag~vpvt~v~~~d~~---~-------------- 501 (560)
T KOG1212|consen 439 FILYWLLGKDDVLICPSFPTPAPPHNYPLLLVNGFSYTGLFNVLDFPAGVVPVTTVTQKDEK---E-------------- 501 (560)
T ss_pred HHHHHHcCCCCEEEeCCCCCCCCcCCCchhhccchhHHHHHHhccCCcccccccccchhhhc---c--------------
Confidence 33444557899999999999999999887777789999999999999999999875421100 1
Q ss_pred cCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcC-CCCCCCCceeEeecCCCchHHHHHHHHH
Q psy179 259 ANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSH-LGDYWSPALHKVMAGPNQDRLCLAVAKK 337 (359)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~Pv~vQVVgrr~~De~lLavAk~ 337 (359)
++. + +.+ .++.....+ .+..|+|+||||||.||+||.||++|++
T Consensus 502 --~~~------~------------~~D---------------~~~~~~~~g~~~s~GlPigVQVVa~p~~delcL~va~~ 546 (560)
T KOG1212|consen 502 --EEY------P------------MND---------------KWATKVPKGSLDSRGLPIGVQVVANPNQDELCLAVARE 546 (560)
T ss_pred --ccc------c------------ccc---------------HHHHhCcccccCCCCCceeEEEecCCCchHHHHHHHHH
Confidence 000 0 000 111222234 3455799999999999999999999999
Q ss_pred HHHHhcCCCCCCC
Q psy179 338 LEDIFYGWTMPNS 350 (359)
Q Consensus 338 lE~~l~~~~~~~~ 350 (359)
||+.++||..|..
T Consensus 547 lE~~~gg~~~p~~ 559 (560)
T KOG1212|consen 547 LERKFGGWVRPGP 559 (560)
T ss_pred HHHHhCCccCCCC
Confidence 9999999998864
No 2
>PRK06170 amidase; Provisional
Probab=99.76 E-value=7.4e-18 Score=172.30 Aligned_cols=112 Identities=29% Similarity=0.462 Sum_probs=96.4
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc--------------cccccccchhhhhcC
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL--------------TTSGVYYAMLANVIG 223 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~--------------~~~~~~yT~~~NlLG 223 (359)
..+..+|.++.+.| ++++ +++.++|+++|+||+||+|.+||+++.... ....+.||.+||++|
T Consensus 364 ~~~~~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G 440 (490)
T PRK06170 364 VLSHRDWLFADAAR-EELR--AAWRRFFAEFDVVLCPVTPTPAFPHDHAPDPLERRIDIDGVSYPYWDQLVWAGLATLPG 440 (490)
T ss_pred cCCHHHHHHHHHHH-HHHH--HHHHHHHhcCCEEEeCCCCCCCCCCCccccccccccccCCcccchhhhhhhcceecccC
Confidence 34678899998888 8888 999999999999999999999999864210 001135899999999
Q ss_pred CCeEEecCCcCCCCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHH
Q psy179 224 FPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFV 303 (359)
Q Consensus 224 lPAISVPvG~~~dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (359)
+|+++||+|+..+|||+|+||
T Consensus 441 ~PaisvP~g~~~~GlPvGlQl----------------------------------------------------------- 461 (490)
T PRK06170 441 LPATAIPIGLSATGLPVGVQI----------------------------------------------------------- 461 (490)
T ss_pred CCeEEEECCcCCCCCceeEEE-----------------------------------------------------------
Confidence 999999999988899999888
Q ss_pred HhhhcCCCCCCCCceeEeecCCCchHHHHHHHHHHHHHhcCCCCCC
Q psy179 304 VKITSHLGDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPN 349 (359)
Q Consensus 304 ~~~~~~~~~~~~Pv~vQVVgrr~~De~lLavAk~lE~~l~~~~~~~ 349 (359)
||++++|++||++|+.+|+.+.+|.+|.
T Consensus 462 ------------------ig~~~~D~~LL~~a~~lE~~~~~~~~~~ 489 (490)
T PRK06170 462 ------------------VGPALEDRTPLRLAELLEEEFGGFRPPP 489 (490)
T ss_pred ------------------ecCCCCHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999999999999998774
No 3
>PRK06169 putative amidase; Provisional
Probab=99.73 E-value=1.9e-17 Score=168.43 Aligned_cols=109 Identities=25% Similarity=0.348 Sum_probs=92.7
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCcccc--c----c-ccccccchhhhhcCCCeEEec
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEIL--L----T-TSGVYYAMLANVIGFPSTNVP 230 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~--~----~-~~~~~yT~~~NlLGlPAISVP 230 (359)
..+..+|.++.+.| ++++ ++|.++|+++|+||+||+|.+||+++... . . .....||.+||++|+|+++||
T Consensus 345 ~~~~~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP 421 (466)
T PRK06169 345 TYSASDYLDATAVR-AALG--ARMGAFHERYDLLLTPTLPIPAFEAGHDVPPGSGLTDWTQWTPFTYPFNLTQQPAASVP 421 (466)
T ss_pred cCCHHHHHHHHHHH-HHHH--HHHHHHHhcCCEEEeCCCCCCCCCCCccCCCccchhhhhhhhcccccccccCCCeEEEe
Confidence 45678899999888 8888 99999999999999999999999986521 0 0 011358999999999999999
Q ss_pred CCcCCCCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCC
Q psy179 231 LGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHL 310 (359)
Q Consensus 231 vG~~~dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (359)
+|+..+|||+|+||
T Consensus 422 ~g~~~~GlPvGlQl------------------------------------------------------------------ 435 (466)
T PRK06169 422 CGFTAAGLPVGLQI------------------------------------------------------------------ 435 (466)
T ss_pred cCcCCCCCceEEEE------------------------------------------------------------------
Confidence 99988899999888
Q ss_pred CCCCCCceeEeecCCCchHHHHHHHHHHHHHhcCCCC
Q psy179 311 GDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTM 347 (359)
Q Consensus 311 ~~~~~Pv~vQVVgrr~~De~lLavAk~lE~~l~~~~~ 347 (359)
||++++|++||++|+.||+++ .|..
T Consensus 436 -----------vg~~~~d~~lL~~a~~le~~~-~~~~ 460 (466)
T PRK06169 436 -----------VGPRHSDDLVLRVARAYEQAL-PWPH 460 (466)
T ss_pred -----------ecCCCcHHHHHHHHHHHHhhc-Cccc
Confidence 999999999999999999986 5653
No 4
>PRK06102 hypothetical protein; Provisional
Probab=99.72 E-value=3.2e-17 Score=166.44 Aligned_cols=106 Identities=25% Similarity=0.308 Sum_probs=90.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCcccc--c------cccccccchhhhhcCCCeEEe
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEIL--L------TTSGVYYAMLANVIGFPSTNV 229 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~--~------~~~~~~yT~~~NlLGlPAISV 229 (359)
..+..+|.++.+.| ++++ ++|.++|+ +|+||+||+|.+||+++... . ......||.+||++|+|+++|
T Consensus 338 ~~~~~~~~~a~~~r-~~~~--~~~~~~~~-~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~Paisv 413 (452)
T PRK06102 338 KITASDYIALLEAR-ERLI--AQVTRELG-GALLATPTVAHVAPPLAPLEADDDLFFATNLKTLRNTMPGNFLDMCGVSL 413 (452)
T ss_pred CCCHHHHHHHHHHH-HHHH--HHHHHHHc-CCEEEeCCCCCCCCCccccccCchhhhhhhhhhhhcCccccccCCCeEEE
Confidence 34568899988888 7888 99999998 89999999999999986420 0 011135899999999999999
Q ss_pred cCCcCCCCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcC
Q psy179 230 PLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSH 309 (359)
Q Consensus 230 PvG~~~dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (359)
|+|+..+|||+|+||
T Consensus 414 P~g~~~~glPvGlQi----------------------------------------------------------------- 428 (452)
T PRK06102 414 PCGTGAAGMPVGLLL----------------------------------------------------------------- 428 (452)
T ss_pred ecCCCCCCCCEEEEE-----------------------------------------------------------------
Confidence 999988899998888
Q ss_pred CCCCCCCceeEeecCCCchHHHHHHHHHHHHHhcC
Q psy179 310 LGDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYG 344 (359)
Q Consensus 310 ~~~~~~Pv~vQVVgrr~~De~lLavAk~lE~~l~~ 344 (359)
||++++|++||++|+.+|+++++
T Consensus 429 ------------vg~~~~D~~lL~~a~~le~~l~~ 451 (452)
T PRK06102 429 ------------SAPAGRDERLLRAALAVEAVIRG 451 (452)
T ss_pred ------------ECCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999865
No 5
>PRK07042 amidase; Provisional
Probab=99.72 E-value=3.5e-17 Score=166.49 Aligned_cols=84 Identities=15% Similarity=0.205 Sum_probs=69.3
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCcccc------ccccccccchhhhhcCCCeEEecC
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEIL------LTTSGVYYAMLANVIGFPSTNVPL 231 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~------~~~~~~~yT~~~NlLGlPAISVPv 231 (359)
..+..+|.++...| .+++ +++.++|+++|+||+||+|.+||+++... ..+....||.+||++|+|+++||+
T Consensus 342 ~~~~~~~~~a~~~~-~~~~--~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~ 418 (464)
T PRK07042 342 DLSGVEAVRGFNQT-FAMR--AAAARLFAEFDYVLSPVAPVPAFPAEWASPTNDPARPFEHIAFTVPWNMSEQPAASINC 418 (464)
T ss_pred CCCHHHHHHHHHHH-HHHH--HHHHHHHhcCCEEEcCCCCCCCCCcccccccccchhhhcccccccceeccCCCeEEeec
Confidence 35667888888777 7788 99999999999999999999999886311 111224589999999999999999
Q ss_pred CcCCCCCceeEEE
Q psy179 232 GLGSNGLPVGLQV 244 (359)
Q Consensus 232 G~~~dGLPVGVQL 244 (359)
|+..+|||+|+||
T Consensus 419 g~~~~GlPvGlQl 431 (464)
T PRK07042 419 GFTRDGLPIGLQI 431 (464)
T ss_pred CcCCCCCCeEEEE
Confidence 9988899998888
No 6
>PRK07488 indole acetimide hydrolase; Validated
Probab=99.71 E-value=7.8e-17 Score=164.27 Aligned_cols=110 Identities=25% Similarity=0.351 Sum_probs=92.5
Q ss_pred cChHHHHHHHHH-HHHHHHHHHHHHHHhc--CCCEEEeCCCCCCcccCcccc---------ccc-cccccchhhhhcCCC
Q psy179 159 AYSRTWDHLLEK-LMMDLRVFFGLKEILG--TDGVLIYPTFPAQAQRHGEIL---------LTT-SGVYYAMLANVIGFP 225 (359)
Q Consensus 159 ~~~~ey~~al~~-Ra~~lR~~~~~~~lf~--~vDVLL~PT~p~~AP~~g~~~---------~~~-~~~~yT~~~NlLGlP 225 (359)
.+..+|.++++. | +.++ +.+.++|+ ++|+||+||+|.+||++++.. ..+ ....||.++|++|+|
T Consensus 349 ~~~~~~~~a~~~~r-~~~~--~~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~P 425 (472)
T PRK07488 349 ISEDAYRAALDVGR-PRLQ--AWYRQAFARHGLDAILFPTTPLTAPPIGDDDTVILNGAAVPTFARVIRNTDPASNAGLP 425 (472)
T ss_pred CCHHHHHHHHHHHH-HHHH--HHHHHHHhhCCCCEEEeCCCCCCCccccccccccccccchhhhhhhhcccccccccCCC
Confidence 467778888776 6 7788 89999998 799999999999999987520 001 113478999999999
Q ss_pred eEEecCCcCCCCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHh
Q psy179 226 STNVPLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVK 305 (359)
Q Consensus 226 AISVPvG~~~dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (359)
+++||+|++.+|||+|+||
T Consensus 426 aisvP~g~~~~glPvGlql------------------------------------------------------------- 444 (472)
T PRK07488 426 GLSLPAGLTPHGLPVGLEL------------------------------------------------------------- 444 (472)
T ss_pred eEEEecCCCCCCCCeeEEE-------------------------------------------------------------
Confidence 9999999988899999888
Q ss_pred hhcCCCCCCCCceeEeecCCCchHHHHHHHHHHHHHhcCCCCC
Q psy179 306 ITSHLGDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMP 348 (359)
Q Consensus 306 ~~~~~~~~~~Pv~vQVVgrr~~De~lLavAk~lE~~l~~~~~~ 348 (359)
+|++++|++||++|+.+|+.+..|+.|
T Consensus 445 ----------------ig~~~~d~~LL~~A~~lE~~~~~~~~~ 471 (472)
T PRK07488 445 ----------------DGPAGSDRRLLAIGRALERVLGRLPAP 471 (472)
T ss_pred ----------------eCCCCCHHHHHHHHHHHHHhhCCCCCC
Confidence 999999999999999999998766765
No 7
>PRK07056 amidase; Provisional
Probab=99.71 E-value=7.3e-17 Score=163.90 Aligned_cols=106 Identities=21% Similarity=0.223 Sum_probs=89.3
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCcccc---ccc-----cccccchhhhhcCCCeEEe
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEIL---LTT-----SGVYYAMLANVIGFPSTNV 229 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~---~~~-----~~~~yT~~~NlLGlPAISV 229 (359)
..+..+|.++.+.| +.++ ++|.++|+++|+||+|++|.+||+++... ..+ ....||.+||++|+|+++|
T Consensus 340 ~~~~~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~g~Paisv 416 (454)
T PRK07056 340 PMSAADYIDLLAAR-AAWI--ARAAARLARFDALVMPTVPIVPPRIADLEADDAAFFRTNALLLRNPSLINFLDGCALSL 416 (454)
T ss_pred CCCHHHHHHHHHHH-HHHH--HHHHHHHccCCEEEECCCCCCCCCcccccccchhhHHHHHHHhhcCccchhcCCCEEEE
Confidence 45677888888888 8888 99999999999999999999999986521 001 1124799999999999999
Q ss_pred cCCcCCCCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcC
Q psy179 230 PLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSH 309 (359)
Q Consensus 230 PvG~~~dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (359)
|+|. .+|+|+|+||
T Consensus 417 P~g~-~~glPvGlqi----------------------------------------------------------------- 430 (454)
T PRK07056 417 PCHA-PGEAPVGLML----------------------------------------------------------------- 430 (454)
T ss_pred eCCC-CCCCCEEEEE-----------------------------------------------------------------
Confidence 9996 4688888888
Q ss_pred CCCCCCCceeEeecCCCchHHHHHHHHHHHHHhcC
Q psy179 310 LGDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYG 344 (359)
Q Consensus 310 ~~~~~~Pv~vQVVgrr~~De~lLavAk~lE~~l~~ 344 (359)
||++++|++||++|+.+|+.+.|
T Consensus 431 ------------vg~~~~D~~lL~~a~~le~~l~~ 453 (454)
T PRK07056 431 ------------AGAPGRDDRLLAIALAVEAVLRG 453 (454)
T ss_pred ------------ECCCCCHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999865
No 8
>PRK07235 amidase; Provisional
Probab=99.70 E-value=5.9e-17 Score=166.98 Aligned_cols=82 Identities=28% Similarity=0.323 Sum_probs=68.1
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCcccc---cc-----ccccccchhhhhcCCCeEEec
Q psy179 159 AYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEIL---LT-----TSGVYYAMLANVIGFPSTNVP 230 (359)
Q Consensus 159 ~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~---~~-----~~~~~yT~~~NlLGlPAISVP 230 (359)
.....|.++++.| ++++ ++|.++|+++|+||+||+|.+||+++... .. .....||.+||++|+|+++||
T Consensus 391 ~~~~~y~~a~~~r-~~~~--~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~PalsvP 467 (502)
T PRK07235 391 YHGRYYAKARNLA-RRLR--AAYDEALRKYDLLVMPTTPMVATPLPAPDASREEYVSRALEMIANTAPFDVTGHPAMSVP 467 (502)
T ss_pred CCHHHHHHHHHHH-HHHH--HHHHHHHhcCCEEeeCCCCCCCCCcccccCchHHHHHHHHhhhccCccchhhCCCeEEEE
Confidence 4567888888888 8888 99999999999999999999999987421 00 112348999999999999999
Q ss_pred CCcCCCCCceeEEE
Q psy179 231 LGLGSNGLPVGLQV 244 (359)
Q Consensus 231 vG~~~dGLPVGVQL 244 (359)
+|+. +|||+|+||
T Consensus 468 ~g~~-~GlPvGlQl 480 (502)
T PRK07235 468 CGLV-DGLPVGLML 480 (502)
T ss_pred CCcC-CCCCeEEEE
Confidence 9985 799999888
No 9
>TIGR00132 gatA glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, A subunit. This orthology group is more narrowly defined here than in Proc Natl Acad Aci USA 94, 11819-11826 (1997). In particular, a Rhodococcus homolog found in association with nitrile hydratase genes and described as an enantiomer-selective amidase active on several 2-aryl propionamides, is excluded here. It is likely, however, that the amidase subunit GatA is not exclusively a part of the Glu-tRNA(Gln) amidotransferase heterotrimer and restricted to that function in all species.
Probab=99.69 E-value=1e-16 Score=162.65 Aligned_cols=80 Identities=25% Similarity=0.377 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc----cccccccchhhhhcCCCeEEecCCcCCCC
Q psy179 162 RTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL----TTSGVYYAMLANVIGFPSTNVPLGLGSNG 237 (359)
Q Consensus 162 ~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~----~~~~~~yT~~~NlLGlPAISVPvG~~~dG 237 (359)
.+|.++++.| .+++ +.+.++|+++|+||+||+|.+||+++.... .+....||.+||++|+|+++||+|+..+|
T Consensus 357 ~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~g~PaisvP~g~~~~G 433 (460)
T TIGR00132 357 KYYLKAQKVR-TLII--DDFLKLFEEVDVIVSPTAPTLPFKIGEKLDDPLEMYLSDILTVPANLAGLPAISVPCGVKEKG 433 (460)
T ss_pred HHHHHHHHHH-HHHH--HHHHHHHhcCCEEEeCCCCCCCCCcccccCchHhhhcccceeccccccCCCcEEEecCcCCCC
Confidence 3477788777 7788 899999999999999999999999975211 11123489999999999999999998889
Q ss_pred CceeEEE
Q psy179 238 LPVGLQV 244 (359)
Q Consensus 238 LPVGVQL 244 (359)
+|+|+|+
T Consensus 434 lPvGlql 440 (460)
T TIGR00132 434 LPIGLQI 440 (460)
T ss_pred CCeeEEE
Confidence 9999888
No 10
>COG0154 GatA Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.5e-16 Score=161.74 Aligned_cols=172 Identities=22% Similarity=0.260 Sum_probs=118.6
Q ss_pred hHHHHHHHHhhhcccccccCCCccch-----hh---hcCCccceehhhhhhhhhhhcccccCCCcccccccccccccccc
Q psy179 75 DLEKYCTLLTTLQDKFEVIPKPKLDS-----AM---HNGGSRLVQCNVQCMQMLCTLHCTSLDPPLHVKSNLTNANVFHV 146 (359)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~g~~~~~~~~~~~~~~~~~h~~~~~p~~~~k~~l~~~~~~~v 146 (359)
.+++.++.|+.+++.++++..|.+.. ++ +-.|-+.-...-. ......-..|+|+..
T Consensus 282 ~~~~a~~~l~~~Ga~v~~v~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~------------- 345 (475)
T COG0154 282 AFEAAVKALEAAGAEVVEVSLPLLSDDYALAAYYLARFDGERYGLRAAD---LYGKTRAEGFGPEVK------------- 345 (475)
T ss_pred HHHHHHHHHHHCCCEEEeccCCchhhhhhhhHHHHHHhhhhhhhhcchh---hhhhhhhhcccHHHH-------------
Confidence 36788899999999999999994333 22 1111111000000 000000011333321
Q ss_pred ccchhhhhhhcccChHHHHHHHHHHHHHH---HHHHHHHHHhcCCCEEEeCCCCCCcccCcc-c---c---ccccccccc
Q psy179 147 SENFCTDTQLVMAYSRTWDHLLEKLMMDL---RVFFGLKEILGTDGVLIYPTFPAQAQRHGE-I---L---LTTSGVYYA 216 (359)
Q Consensus 147 ~~rf~~~~rl~~~~~~ey~~al~~Ra~~l---R~~~~~~~lf~~vDVLL~PT~p~~AP~~g~-~---~---~~~~~~~yT 216 (359)
.+ ..........+|..+...+ ... + +++.++|+++|+||+||+|.+||++++ . . ..+....||
T Consensus 346 -~r---i~~G~~~~~~~~~~a~~~~-~~~~~i~--~~~~~~f~~~D~ll~Pt~~~~a~~ig~~~~~~~~~~~~~~~~~~t 418 (475)
T COG0154 346 -RR---IMLGTYLLSAGYYDAYYRR-AQKTLIR--RAFDKLFEEVDVLLTPTTPTPAPKIGESESDGDDPLEMYLLDVFT 418 (475)
T ss_pred -HH---HhccccccchHHHHHHHHH-HHHHHHH--HHHHHHHHhCCEEEeCCCCCCCcccccccccccCHHHHhhhcccc
Confidence 11 1233445667777777766 333 6 899999999999999999999999997 1 1 112234789
Q ss_pred hhhhhcCCCeEEecCCcCCCCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchh
Q psy179 217 MLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFI 296 (359)
Q Consensus 217 ~~~NlLGlPAISVPvG~~~dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 296 (359)
.++|++|+|+++||+|++.+|||+|+||
T Consensus 419 ~~~Nl~G~PaisvP~g~~~~GlPvGlql---------------------------------------------------- 446 (475)
T COG0154 419 VPANLAGLPAISVPAGFTADGLPVGLQL---------------------------------------------------- 446 (475)
T ss_pred ccccccCCCeEEeccCCCCCCCCeeEEE----------------------------------------------------
Confidence 9999999999999999988899999998
Q ss_pred hhhhhHHHhhhcCCCCCCCCceeEeecCCCchHHHHHHHHHHHHHhcCCC
Q psy179 297 DIKLMFVVKITSHLGDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWT 346 (359)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~~Pv~vQVVgrr~~De~lLavAk~lE~~l~~~~ 346 (359)
+|++|+|+++|++|+.+|++.+...
T Consensus 447 -------------------------ig~~~~d~~LL~~a~~~E~~~~~~~ 471 (475)
T COG0154 447 -------------------------IGPAFDDATLLRLAAALEQALGWHR 471 (475)
T ss_pred -------------------------ecCCCCHHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999986433
No 11
>PRK07486 amidase; Provisional
Probab=99.68 E-value=1.9e-16 Score=161.87 Aligned_cols=84 Identities=19% Similarity=0.180 Sum_probs=68.2
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCcccc---------ccc-cccccchhhhhcCCCeE
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEIL---------LTT-SGVYYAMLANVIGFPST 227 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~---------~~~-~~~~yT~~~NlLGlPAI 227 (359)
..+..+|.++++.| .+++ ++|.++|+++|+||+||+|.+||+++... ..+ ....+|.+||++|+|++
T Consensus 357 ~~~~~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~Pai 433 (484)
T PRK07486 357 ALTAAQVYEASVIR-SAWY--QALLRLFERYDFLALPTAQVFPFDAEWRWPRAIAGRAMDTYHRWMEVVVPATLAGLPAI 433 (484)
T ss_pred CCCHHHHHHHHHHH-HHHH--HHHHHHHhcCCEEEcCCCCCCCCccccccccccccchhhhhhhhhcccccccccCCCeE
Confidence 35677888888877 8888 99999999999999999999998875310 001 11236889999999999
Q ss_pred EecCCcCCCCCceeEEE
Q psy179 228 NVPLGLGSNGLPVGLQV 244 (359)
Q Consensus 228 SVPvG~~~dGLPVGVQL 244 (359)
+||+|++.+|||+|+||
T Consensus 434 svP~g~~~~glPvGlQl 450 (484)
T PRK07486 434 SVPVGFNAAGLPMGMQI 450 (484)
T ss_pred EEECCcCCCCCceEEEE
Confidence 99999988899998888
No 12
>PRK05962 amidase; Validated
Probab=99.67 E-value=3.8e-16 Score=157.39 Aligned_cols=82 Identities=18% Similarity=0.201 Sum_probs=66.4
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCcccccc---c---c--ccccchhhhhcCCCeEEe
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLT---T---S--GVYYAMLANVIGFPSTNV 229 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~~---~---~--~~~yT~~~NlLGlPAISV 229 (359)
..+..+|.++.+.| .+++ +.|.++|+++|+||+||+|.+||+++..... + . ...||.+||++|+|+++|
T Consensus 311 ~~~~~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~n~~G~Pa~sv 387 (424)
T PRK05962 311 KVPLEAYHRLMRTR-AALA--RAMDERLAGFDMFALPATPIVAPTIASVSEDEEEYDRVENLLLRNTQVANQFDLCSITL 387 (424)
T ss_pred CCCHHHHHHHHHHH-HHHH--HHHHHHhcCCCEEEeCCCCCCCCCccccccchHHHHHHHHHHHhhCcCccccCCCeEEE
Confidence 34678899998888 7888 9999999999999999999999998642110 1 1 124899999999999999
Q ss_pred cCCcCCCCCceeEEE
Q psy179 230 PLGLGSNGLPVGLQV 244 (359)
Q Consensus 230 PvG~~~dGLPVGVQL 244 (359)
|+|. +|+|+|+||
T Consensus 388 P~g~--~glPvGlql 400 (424)
T PRK05962 388 PMPG--MALPAGLML 400 (424)
T ss_pred ECCC--CCCCEEEEE
Confidence 9973 588888888
No 13
>PRK00012 gatA aspartyl/glutamyl-tRNA amidotransferase subunit A; Reviewed
Probab=99.67 E-value=1.8e-16 Score=160.75 Aligned_cols=80 Identities=28% Similarity=0.432 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccc----cccccccccchhhhhcCCCeEEecCCcCCCC
Q psy179 162 RTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEI----LLTTSGVYYAMLANVIGFPSTNVPLGLGSNG 237 (359)
Q Consensus 162 ~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~----~~~~~~~~yT~~~NlLGlPAISVPvG~~~dG 237 (359)
..|.++++.| .+++ ++|.++|+++|+||+|++|.+||+++.. ...+....||.+||++|+|+++||+|+..+|
T Consensus 358 ~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~n~~G~PaisvP~g~~~~g 434 (459)
T PRK00012 358 AYYLKAQKVR-TLIK--QDFEKAFEKVDVILGPTAPTTAFKIGEKTDDPLAMYLSDIFTVPANLAGLPAISVPAGFDDGG 434 (459)
T ss_pred HHHHHHHHHH-HHHH--HHHHHHHhcCCEEEeCCCCCCCcccccccCchHhhhccccccccccccCCCcEEEecCCCCCC
Confidence 3477777777 7788 8999999999999999999999999652 1112223489999999999999999998889
Q ss_pred CceeEEE
Q psy179 238 LPVGLQV 244 (359)
Q Consensus 238 LPVGVQL 244 (359)
+|+|+||
T Consensus 435 lPvGlql 441 (459)
T PRK00012 435 LPVGLQL 441 (459)
T ss_pred CCEEEEE
Confidence 9999888
No 14
>PRK07487 amidase; Provisional
Probab=99.66 E-value=5.8e-16 Score=157.95 Aligned_cols=108 Identities=21% Similarity=0.228 Sum_probs=90.0
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc---cc----cccccchhhhhcCCCeEEec
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL---TT----SGVYYAMLANVIGFPSTNVP 230 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~---~~----~~~~yT~~~NlLGlPAISVP 230 (359)
..+..+|.++++.| ++++ ++|.++|+++|+||+||+|.+||+++.... .+ ....+|.+||++|+|+++||
T Consensus 347 ~~~~~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP 423 (469)
T PRK07487 347 PLDLAGYMNALARR-ATLT--RQWQLFFEDYPLLLMPVSAELPFPDDLDRQGAEGFRRVWEAQLPQIALPFMGLPGLSVP 423 (469)
T ss_pred CCCHHHHHHHHHHH-HHHH--HHHHHHHhcCCEEEcCCCCCCCCCCCCcCCchhhhhHHHHhhcccccccccCCCeEEEE
Confidence 45778899999888 8888 999999999999999999999999864211 00 11235778999999999999
Q ss_pred CCcCCCCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCC
Q psy179 231 LGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHL 310 (359)
Q Consensus 231 vG~~~dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (359)
+|+. +|||+|+||
T Consensus 424 ~g~~-~GlPvGlQl------------------------------------------------------------------ 436 (469)
T PRK07487 424 TGLV-GGVPVGVQL------------------------------------------------------------------ 436 (469)
T ss_pred CccC-CCcceeEEE------------------------------------------------------------------
Confidence 9985 588888888
Q ss_pred CCCCCCceeEeecCCCchHHHHHHHHHHHHHhcCCC
Q psy179 311 GDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWT 346 (359)
Q Consensus 311 ~~~~~Pv~vQVVgrr~~De~lLavAk~lE~~l~~~~ 346 (359)
||++++|+.||++|+.+|++++.-+
T Consensus 437 -----------vg~~~~D~~lL~~a~~lE~~~~~~~ 461 (469)
T PRK07487 437 -----------VAGRFREDLCLAAGEAIEARGGPPT 461 (469)
T ss_pred -----------eCCCCCHHHHHHHHHHHHHhhCCCC
Confidence 9999999999999999999986544
No 15
>PRK08186 allophanate hydrolase; Provisional
Probab=99.66 E-value=3.9e-16 Score=164.25 Aligned_cols=150 Identities=18% Similarity=0.205 Sum_probs=98.8
Q ss_pred hhHHHHHHHHhhhcccccccCCCccch-hh-hcCCccceehhhhhhhhhhhcccccCCCccccccccccccccccccchh
Q psy179 74 SDLEKYCTLLTTLQDKFEVIPKPKLDS-AM-HNGGSRLVQCNVQCMQMLCTLHCTSLDPPLHVKSNLTNANVFHVSENFC 151 (359)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~g~~~~~~~~~~~~~~~~~h~~~~~p~~~~k~~l~~~~~~~v~~rf~ 151 (359)
..+++-++.|+.++..+++|..|.++. +. --.|.|..+.. .-+......|...++|..+ .++.
T Consensus 272 ~a~~~a~~~L~~~G~~v~ei~~~~~~~~~~~~~~~~~~ae~~-~~~~~~~~~~~~~~~p~~~--------------~~i~ 336 (600)
T PRK08186 272 AAFAAALARLEALGAELVEIDFSPFLEAARLLYEGPWVAERY-AAVGEFLEAHPDAVDPVVR--------------GIIA 336 (600)
T ss_pred HHHHHHHHHHHHcCCeEEEecchhHHHHHHHHHHHHHHHHHH-HHHHHHHhhChhhcCHHHH--------------HHHH
Confidence 355677777888888898888876632 21 11233332211 1122222334444555422 1122
Q ss_pred hhhhhcccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCcc---cccccc-ccccchhhhhcCCCeE
Q psy179 152 TDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGE---ILLTTS-GVYYAMLANVIGFPST 227 (359)
Q Consensus 152 ~~~rl~~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~---~~~~~~-~~~yT~~~NlLGlPAI 227 (359)
.....+..+|.++.+.| ++++ +++.++|+++|+||+||+|.+++.... +..... ...||.+||++|+|++
T Consensus 337 ---~g~~~sa~~~~~a~~~r-~~l~--~~~~~~~~~~D~Ll~Pt~p~~~~~~~~~~~~~~~~~~~~~yT~~~Nl~glPAi 410 (600)
T PRK08186 337 ---GAAAFSAADAFRALYRL-AELR--RAAEAVLAGIDALLVPTAPTHPTIAEVAADPIGLNSRLGTYTNFVNLLDLCAL 410 (600)
T ss_pred ---hCcCCCHHHHHHHHHHH-HHHH--HHHHHHhcCCCEEEeCCCCCCCCchhhcCCchhhhhhhhhccccccccCCCeE
Confidence 22235678888888888 8888 999999999999999999998753221 111111 1248999999999999
Q ss_pred EecCCcCCCCCceeEEE
Q psy179 228 NVPLGLGSNGLPVGLQV 244 (359)
Q Consensus 228 SVPvG~~~dGLPVGVQL 244 (359)
+||+|+..+|+|+||||
T Consensus 411 svP~g~~~~GlPvGvql 427 (600)
T PRK08186 411 AVPAGFRADGLPFGVTL 427 (600)
T ss_pred EEecccCCCCCCeeEEE
Confidence 99999988999999888
No 16
>PRK07869 amidase; Provisional
Probab=99.65 E-value=5.3e-16 Score=157.88 Aligned_cols=81 Identities=31% Similarity=0.438 Sum_probs=65.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCcccccc----------ccccccchhhhhcCCCeEEec
Q psy179 161 SRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLT----------TSGVYYAMLANVIGFPSTNVP 230 (359)
Q Consensus 161 ~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~~----------~~~~~yT~~~NlLGlPAISVP 230 (359)
..++.++++.| ++++ +.+.++|+++|+||+||+|.+||+++..... .....||.+||++|+|+++||
T Consensus 351 ~~~~~~a~~~~-~~~~--~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP 427 (468)
T PRK07869 351 LHRLPLAIARL-RRLR--RVYARFFGTYDVVLTPTLAHTTPEIGYLDPTQDFDTVLDRLISYVAFTPLQNATGEPAISLP 427 (468)
T ss_pred HHHHHHHHHHH-HHHH--HHHHHHHhcCCEEecCCCCCCCCCCCccCccccchhhhHHHhcccccCccccccCCCceeee
Confidence 34566677666 6777 8999999999999999999999998741100 011358999999999999999
Q ss_pred CCcCCCCCceeEEE
Q psy179 231 LGLGSNGLPVGLQV 244 (359)
Q Consensus 231 vG~~~dGLPVGVQL 244 (359)
+|+..+|||+|+||
T Consensus 428 ~g~~~~GlPvGlQi 441 (468)
T PRK07869 428 LGQSSDGLPVGMMF 441 (468)
T ss_pred cCcCCCCCCeeEEE
Confidence 99988899999888
No 17
>TIGR02713 allophanate_hyd allophanate hydrolase. Allophanate hydrolase catalyzes the second reaction in an ATP-dependent two-step degradation of urea to ammonia and C02, following the action of the biotin-containing urea carboxylase. The yeast enzyme, a fusion of allophanate hydrolase to urea carboxylase, is designated urea amidolyase.
Probab=99.65 E-value=4.3e-16 Score=162.94 Aligned_cols=150 Identities=17% Similarity=0.186 Sum_probs=99.3
Q ss_pred hhHHHHHHHHhhhcccccccCCCccchhh--hcCCccceehhhhhhhhhhhcccccCCCccccccccccccccccccchh
Q psy179 74 SDLEKYCTLLTTLQDKFEVIPKPKLDSAM--HNGGSRLVQCNVQCMQMLCTLHCTSLDPPLHVKSNLTNANVFHVSENFC 151 (359)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~h~~~~~p~~~~k~~l~~~~~~~v~~rf~ 151 (359)
..+++-++.|+.++..+++|..|.+.... -..|.|..+. .+-++.....|...++|..+ .++.
T Consensus 235 ~a~~~a~~~L~~~G~~v~~v~~~~~~~~~~~l~~~~~~~e~-~~~~~~~~~~~~~~~~p~~~--------------~~l~ 299 (561)
T TIGR02713 235 AAFAAAVERLEALGVEVVEIDFAPFLETAALLYEGPWVAER-YAAVGEFVEAQPDALDPVVR--------------GIIT 299 (561)
T ss_pred HHHHHHHHHHHHCCCEEEEecchhHHHHHHHHHHHHHHHHH-HHHHHHHHhhChhhcCHHHH--------------HHHH
Confidence 35677788888888888888887643221 1123333221 11122222334444555432 1111
Q ss_pred hhhhhcccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccc---cccc-cccccchhhhhcCCCeE
Q psy179 152 TDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEI---LLTT-SGVYYAMLANVIGFPST 227 (359)
Q Consensus 152 ~~~rl~~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~---~~~~-~~~~yT~~~NlLGlPAI 227 (359)
.....+..+|.++.++| ++++ +++.++|+++|+||+||+|.+++..+.. .... ....||.++|++|+|++
T Consensus 300 ---~g~~~sa~~~~~a~~~r-~~l~--~~~~~~~~~~DvLl~Pt~p~~~~~~~~~~~~~~~~~~~~~yT~~~Nl~glPAi 373 (561)
T TIGR02713 300 ---SATRFSAADAFAAQYRL-AALR--RKAEALLAGVDVLLVPTAPTHPTIEEVLADPVGLNSRLGTYTNFVNLLDLCAV 373 (561)
T ss_pred ---hccCCCHHHHHHHHHHH-HHHH--HHHHHHHhcCCEEEeCCCCCCCCchhccCCchhhhhhhhcccccccccCCceE
Confidence 22245678888888888 8888 9999999999999999999987543211 1101 11359999999999999
Q ss_pred EecCCcCCCCCceeEEE
Q psy179 228 NVPLGLGSNGLPVGLQV 244 (359)
Q Consensus 228 SVPvG~~~dGLPVGVQL 244 (359)
+||+|+..+|||+||||
T Consensus 374 svP~g~~~~GlPvGvql 390 (561)
T TIGR02713 374 AVPAGFRSDGLPFGVTL 390 (561)
T ss_pred EeecccCCCCCCEEEEE
Confidence 99999988899999888
No 18
>PRK06061 amidase; Provisional
Probab=99.65 E-value=7.3e-16 Score=157.86 Aligned_cols=84 Identities=26% Similarity=0.361 Sum_probs=70.0
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc---------cccccccchhhhhcCCCeEE
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL---------TTSGVYYAMLANVIGFPSTN 228 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~---------~~~~~~yT~~~NlLGlPAIS 228 (359)
..+..+|.++++.| ++++ ++|.++|+++|+||+||+|.+||++++... ......||.+||++|+|+++
T Consensus 355 ~~~~~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~Nl~G~Pais 431 (483)
T PRK06061 355 LLSQAILRLARAAE-AAAQ--RRVGSIFDIVDVVLAPTTAQPPPRVGAFDRLGGWATDRAMIAACPYTWPWNVLGWPSIN 431 (483)
T ss_pred cCCHHHHHHHHHHH-HHHH--HHHHHHHhcCCEEEcCCCCCCCCCcccccccccchhhhhhhhcccccccccccCCCeEE
Confidence 35678899888888 8888 999999999999999999999999975210 01113489999999999999
Q ss_pred ecCCcCCCCCceeEEE
Q psy179 229 VPLGLGSNGLPVGLQV 244 (359)
Q Consensus 229 VPvG~~~dGLPVGVQL 244 (359)
||+|+..+|||+|+||
T Consensus 432 vP~g~~~~GlPvGlQi 447 (483)
T PRK06061 432 VPAGFTSDGLPIGAQL 447 (483)
T ss_pred EecCcCCCCCCeeeEE
Confidence 9999988899999888
No 19
>PRK06529 amidase; Provisional
Probab=99.64 E-value=6.9e-16 Score=157.72 Aligned_cols=84 Identities=24% Similarity=0.329 Sum_probs=69.6
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc-------------------------c---
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL-------------------------T--- 209 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~-------------------------~--- 209 (359)
..+..+|.++.+.| ++++ ++|.++|+++|+||+||+|.+||+++.... .
T Consensus 345 ~~~~~~~~~a~~~r-~~~~--~~~~~~f~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (482)
T PRK06529 345 DIPAKRYSQVLQKW-DTYS--ATMASFHETYDLLLTFTTNTPAPKHGQLDPDSKLMANLAQAEIFSSEEQQNLVETMFEK 421 (482)
T ss_pred cCCHHHHHHHHHHH-HHHH--HHHHHHHcCCCEEEcCCCCCCCCCCCccCcccchhhhccccccccchhhhhhhhhhhhh
Confidence 45678898888888 8888 899999999999999999999999864100 0
Q ss_pred -ccccccchhhhhcCCCeEEecCCcCCCCCceeEEE
Q psy179 210 -TSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQV 244 (359)
Q Consensus 210 -~~~~~yT~~~NlLGlPAISVPvG~~~dGLPVGVQL 244 (359)
.....||.+||++|+|+++||+|+..+|||+|+||
T Consensus 422 ~~~~~~~t~~~Nl~G~PaisvP~g~~~~GlPvGlQl 457 (482)
T PRK06529 422 SLAITPYTALANLTGQPAISLPTYETKEGLPMGVQL 457 (482)
T ss_pred hhhcccccccccccCCCeEEeecCcCCCCCceeEEE
Confidence 01124899999999999999999988899999888
No 20
>PRK08310 amidase; Provisional
Probab=99.64 E-value=8.8e-16 Score=153.50 Aligned_cols=83 Identities=24% Similarity=0.422 Sum_probs=68.1
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCcccccc-----ccccccchhhhhcCCCeEEecCC
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLT-----TSGVYYAMLANVIGFPSTNVPLG 232 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~~-----~~~~~yT~~~NlLGlPAISVPvG 232 (359)
..+..+|.++.+.| ++++ +++.++|+++|+||+|++|.+||+++..... .....||.+||++|+|+++||+|
T Consensus 286 ~~~~~~~~~a~~~r-~~~~--~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~t~~~N~~G~PaisvP~g 362 (395)
T PRK08310 286 EVTADQVEAARARR-AAFA--RELAALLGPDAVLLLPTVPGAAPLRGAPFEALEAYRERALRLLCIAGLAGLPQISLPLA 362 (395)
T ss_pred cCCHHHHHHHHHHH-HHHH--HHHHHHhcCCCEEEeCCCCCCCccCCCccchHHHHHHHHHhhceeehhcCCCeEEEECC
Confidence 45678888888888 8888 9999999999999999999999998752110 11235899999999999999999
Q ss_pred cCCCCCceeEEE
Q psy179 233 LGSNGLPVGLQV 244 (359)
Q Consensus 233 ~~~dGLPVGVQL 244 (359)
. .+|||+|+||
T Consensus 363 ~-~~glPvglQi 373 (395)
T PRK08310 363 S-VDGAPFGLSL 373 (395)
T ss_pred C-CCCCCEEEEE
Confidence 6 5788888888
No 21
>PRK08137 amidase; Provisional
Probab=99.64 E-value=1.7e-15 Score=155.33 Aligned_cols=111 Identities=23% Similarity=0.176 Sum_probs=85.5
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEeCCCCCCcccCccccccccccccchhhhhcCCCeEEecCCcCC
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILG--TDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGS 235 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~--~vDVLL~PT~p~~AP~~g~~~~~~~~~~yT~~~NlLGlPAISVPvG~~~ 235 (359)
..+..+|.++++.+ ++++..++|.++|+ ++|+||+||+| +||+++..........+|.+||++|+|+++||+|+.
T Consensus 377 ~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~D~ll~Pt~~-~ap~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~- 453 (497)
T PRK08137 377 GLDDPAYLDALADA-KRLAGPEGIDAALKEHRLDALVAPTTG-PAWLIDLINGDSFGGSSSTPAAVAGYPHLTVPMGQV- 453 (497)
T ss_pred CCCHHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCEEEeCCCC-CCcccccccccccccccccccHhhCCCeEEEeCCCC-
Confidence 35677788777534 23321168889997 68999999999 888886421111123478899999999999999986
Q ss_pred CCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCCCCCCC
Q psy179 236 NGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWS 315 (359)
Q Consensus 236 dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
+|||+|+||
T Consensus 454 ~GlPvGvQl----------------------------------------------------------------------- 462 (497)
T PRK08137 454 QGLPVGLSF----------------------------------------------------------------------- 462 (497)
T ss_pred CCcCeEEEE-----------------------------------------------------------------------
Confidence 799998888
Q ss_pred CceeEeecCCCchHHHHHHHHHHHHHhcCCCCCC
Q psy179 316 PALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPN 349 (359)
Q Consensus 316 Pv~vQVVgrr~~De~lLavAk~lE~~l~~~~~~~ 349 (359)
||++++|+.||++|+.+|+.+ .|.++.
T Consensus 463 ------ig~~~~d~~LL~~a~~lE~~~-~~~~~p 489 (497)
T PRK08137 463 ------IGAAWSEARLLELGYAYEQAT-HARREP 489 (497)
T ss_pred ------ECCCCCHHHHHHHHHHHHHhc-CcCCCC
Confidence 999999999999999999996 575544
No 22
>PRK07139 amidase; Provisional
Probab=99.64 E-value=1.2e-15 Score=154.70 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccccc-cc-cccchhhhhcCCCeEEecCCcCCCCCc
Q psy179 162 RTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLTT-SG-VYYAMLANVIGFPSTNVPLGLGSNGLP 239 (359)
Q Consensus 162 ~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~~~-~~-~~yT~~~NlLGlPAISVPvG~~~dGLP 239 (359)
..|.++.+.| ++++ +.+.++|+++|+||+||+|.+||+++...... .. ..+|.++|++|+|+++||+| ..+|||
T Consensus 332 ~~~~~a~~~r-~~~~--~~~~~~f~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g-~~~glP 407 (439)
T PRK07139 332 KYFLKAKKVR-RVIK--NYYESIHNKFDIVIYPAYADIAPDIDENENKSDNYMDYILTISNLVGNPSLSIPLG-KYNNLP 407 (439)
T ss_pred HHHHHHHHHH-HHHH--HHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhhhhcccCcccCCCCeEEEeCC-CCCCCC
Confidence 4577777777 7788 89999999999999999999999986521000 01 12478899999999999999 578999
Q ss_pred eeEEE
Q psy179 240 VGLQV 244 (359)
Q Consensus 240 VGVQL 244 (359)
+|+||
T Consensus 408 iGlqi 412 (439)
T PRK07139 408 FNLAI 412 (439)
T ss_pred eEEEE
Confidence 99888
No 23
>TIGR02715 amido_AtzE amidohydrolase, AtzE family. Members of this protein family are aminohydrolases related to, but distinct from, glutamyl-tRNA(Gln) amidotransferase subunit A. The best characterized member is the biuret hydrolase of Pseudomonas sp. ADP, which hydrolyzes ammonia from the three-nitrogen compound biuret to yield allophanate. Allophanate is also an intermediate in urea degradation by the urea carboxylase/allophanate hydrolase pathway, an alternative to urease.
Probab=99.62 E-value=2.6e-15 Score=152.35 Aligned_cols=82 Identities=21% Similarity=0.252 Sum_probs=67.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCcccc---c------cccccccchhhhhcCCCeEEe
Q psy179 159 AYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEIL---L------TTSGVYYAMLANVIGFPSTNV 229 (359)
Q Consensus 159 ~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~---~------~~~~~~yT~~~NlLGlPAISV 229 (359)
.+..+|.++.+.| ++++ ++|.++|+++|+||+||+|.+||+++... . ......||.+||++|+|+++|
T Consensus 337 ~~~~~~~~a~~~r-~~~~--~~~~~~~~~~Dvll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~Paisv 413 (452)
T TIGR02715 337 LPASWYAQAQRFR-HWFR--DAIRELFQRVDVLIAPATPCSAPLIGQETMIIDGVPVPVRANLGIFTQPISFAGLPVLAA 413 (452)
T ss_pred CCHHHHHHHHHHH-HHHH--HHHHHHHhcCCEEEeCCCCCCCCcCcccccccCccchhhhhhHHhcCccchhcCCCeEEE
Confidence 4677888888888 8888 99999999999999999999999986421 0 011134899999999999999
Q ss_pred cCCcCCCCCceeEEE
Q psy179 230 PLGLGSNGLPVGLQV 244 (359)
Q Consensus 230 PvG~~~dGLPVGVQL 244 (359)
|+|. .+|||+|+||
T Consensus 414 P~g~-~~glPvGlQi 427 (452)
T TIGR02715 414 PLPR-PGRLPIGVQL 427 (452)
T ss_pred eCCC-CCCCCeEEEE
Confidence 9998 4788888888
No 24
>PLN02722 indole-3-acetamide amidohydrolase
Probab=99.62 E-value=1.4e-15 Score=153.87 Aligned_cols=83 Identities=28% Similarity=0.409 Sum_probs=69.0
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc---cc--cccccchhhhhcCCCeEEecCC
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL---TT--SGVYYAMLANVIGFPSTNVPLG 232 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~---~~--~~~~yT~~~NlLGlPAISVPvG 232 (359)
..+..+|.++++.| .+++ +++.++|+++|+||+||+|.+||+++.... .. ....+|.++|++|+|+++||+|
T Consensus 314 ~~s~~~y~~a~~~r-~~~~--~~~~~~~~~~D~Ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g 390 (422)
T PLN02722 314 RTTEEKIDACQSVK-TELR--AALTTLLGEFGVLVIPTVPGPPPKLQADPTTLESFRARAFSLLSIAGVSGFCQVSIPLG 390 (422)
T ss_pred cCCHHHHHHHHHHH-HHHH--HHHHHHhcCCCEEEeCCCCCCCCCcccCcchHHHHHHHHHHhhhcccccCCCEEEEeCC
Confidence 45678999999888 8888 999999999999999999999998864211 11 1235899999999999999999
Q ss_pred cCCCCCceeEEE
Q psy179 233 LGSNGLPVGLQV 244 (359)
Q Consensus 233 ~~~dGLPVGVQL 244 (359)
.. +|||+|+||
T Consensus 391 ~~-~glPvGlqi 401 (422)
T PLN02722 391 LH-DNLPVSVSL 401 (422)
T ss_pred CC-CCCCEEEEE
Confidence 86 689999888
No 25
>PRK09201 amidase; Provisional
Probab=99.61 E-value=2.7e-15 Score=152.95 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=67.8
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc---------cccccccchhhhhcCCCeEEe
Q psy179 159 AYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL---------TTSGVYYAMLANVIGFPSTNV 229 (359)
Q Consensus 159 ~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~---------~~~~~~yT~~~NlLGlPAISV 229 (359)
.+..+|.++++.| +.++ ++|.++|+++|+||+||+|.+||+++.... ......||.+||++|+|+++|
T Consensus 344 ~~~~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~Paisv 420 (465)
T PRK09201 344 LPAAWYVQAQRFR-RWFR--QAVLELFEHVDVLIAPATPCSAPLIGQETMRIDGVELPVRANLGILTQPISFIGLPVVAV 420 (465)
T ss_pred CCHHHHHHHHHHH-HHHH--HHHHHHHhcCCEEEeCCCCCCCCcccccccccCcchhhhhhhHHHhCccccccCCCeEEE
Confidence 4678899999888 8888 999999999999999999999999865210 011135899999999999999
Q ss_pred cCCcCCCCCceeEEE
Q psy179 230 PLGLGSNGLPVGLQV 244 (359)
Q Consensus 230 PvG~~~dGLPVGVQL 244 (359)
|+|. .+|+|+|+||
T Consensus 421 P~g~-~~GlPvGlQi 434 (465)
T PRK09201 421 PLRT-PGGLPIGVQL 434 (465)
T ss_pred eCCC-CCCcCeEEEE
Confidence 9996 4688888888
No 26
>PRK12470 amidase; Provisional
Probab=99.61 E-value=4.2e-15 Score=151.50 Aligned_cols=82 Identities=23% Similarity=0.343 Sum_probs=63.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc---------cccccccchhhhhcCCCeEEec
Q psy179 160 YSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL---------TTSGVYYAMLANVIGFPSTNVP 230 (359)
Q Consensus 160 ~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~---------~~~~~~yT~~~NlLGlPAISVP 230 (359)
...+|. +...+..+++ ++|.++|+++|+||+||+|.+||+++.... ......||.+||++|+|+++||
T Consensus 341 ~~~~~~-~~~~~~~~~~--~~~~~~~~~~D~ll~Pt~p~~ap~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP 417 (462)
T PRK12470 341 SDRRMA-ALRAAEVVLS--ARIQSIFDDVDVVVTPGTATGPSRIGAYQRRGAVSTLLLVVQRVPYFQVWNLTGQPAAVVP 417 (462)
T ss_pred CHHHHH-HHHHHHHHHH--HHHHHHHhCCCEEeCCCCCCCCCCCCccCCCcchhhhhhhhhccCcCccchhcCCCeEEEe
Confidence 445555 3334324777 899999999999999999999999864210 0012358999999999999999
Q ss_pred CCcCCCCCceeEEE
Q psy179 231 LGLGSNGLPVGLQV 244 (359)
Q Consensus 231 vG~~~dGLPVGVQL 244 (359)
+|++.+|||+|+||
T Consensus 418 ~g~~~~GlPvGlql 431 (462)
T PRK12470 418 WDFDGDGLPMSVQL 431 (462)
T ss_pred cCcCCCCCceEEEE
Confidence 99988899999998
No 27
>PF01425 Amidase: Amidase; InterPro: IPR000120 Amidase signature (AS) enzymes are a large group of hydrolytic enzymes that contain a conserved stretch of approximately 130 amino acids known as the AS sequence. They are widespread, being found in both prokaryotes and eukaryotes. AS enzymes catalyse the hydrolysis of amide bonds (CO-NH2), although the family has diverged widely with regard to substrate specificity and function. Nonetheless, these enzymes maintain a core alpha/beta/alpha structure, where the topologies of the N- and C-terminal halves are similar. AS enzymes characteristically have a highly conserved C-terminal region rich in serine and glycine residues, but devoid of aspartic acid and histidine residues, therefore they differ from classical serine hydrolases. These enzymes posses a unique, highly conserved Ser-Ser-Lys catalytic triad used for amide hydrolysis, although the catalytic mechanism for acyl-enzyme intermediate formation can differ between enzymes []. Examples of AS enzymes include: Peptide amidase (Pam) [], which catalyses the hydrolysis of the C-terminal amide bond of peptides. Fatty acid amide hydrolases [], which hydrolyse fatty acid amid substrates (e.g. cannabinoid anandamide and sleep-inducing oleamide), thereby controlling the level and duration of signalling induced by this diverse class of lipid transmitters. Malonamidase E2 [], which catalyses the hydrolysis of malonamate into malonate and ammonia, and which is involved in the transport of fixed nitrogen from bacteroids to plant cells in symbiotic nitrogen metabolism. Subunit A of Glu-tRNA(Gln) amidotransferase [],a heterotrimeric enzyme that catalyses the formation of Gln-tRNA(Gln) by the transamidation of misacylated Glu-tRNA(Gln) via amidolysis of glutamine. ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 1OCL_B 1OBK_A 1OBL_B 1OBJ_A 1OCM_B 1OCH_A 1OCK_B 1OBI_A 1O9Q_A 1O9N_B ....
Probab=99.57 E-value=1.3e-15 Score=147.83 Aligned_cols=154 Identities=25% Similarity=0.330 Sum_probs=96.2
Q ss_pred hhHHHHHHHHhhhcccccccCCCccchhhhcCCccceehhhhhh-------hhhhhcccccCCCcccccccccccccccc
Q psy179 74 SDLEKYCTLLTTLQDKFEVIPKPKLDSAMHNGGSRLVQCNVQCM-------QMLCTLHCTSLDPPLHVKSNLTNANVFHV 146 (359)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~~~h~~~~~p~~~~k~~l~~~~~~~v 146 (359)
.-+++-.+.|+.++..++++..|.++.++.........-..++. +.+...+...+++ .+
T Consensus 258 ~a~~~a~~~L~~~G~~vv~~~~p~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~ 323 (441)
T PF01425_consen 258 RAFEEAAEALEAAGAEVVEVDLPDLDEAMDAYYRIFVSEGAANLARYKDFARLLAKWRDPPLSP--------------IV 323 (441)
T ss_dssp HHHHHHHHHHHHTT-EEEEE--TTGGHHHHHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHSHH--------------HH
T ss_pred HHHHHHHHhhcccccccccccCchHHHHHHHHhhhHHHHHHHHHhhhhHHHHhhhccccccccc--------------ch
Confidence 34567788899999999999999998875522111111111110 0011111111222 22
Q ss_pred ccchhhhhhhccc--ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc----------cccccc
Q psy179 147 SENFCTDTQLVMA--YSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL----------TTSGVY 214 (359)
Q Consensus 147 ~~rf~~~~rl~~~--~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~----------~~~~~~ 214 (359)
..++......... ..+.|.++.+.| .+++ +++.++|+++|+||+|+++.+||+++.... ......
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 400 (441)
T PF01425_consen 324 RSRLEQGAAISSAEDDSEYYLQAQRRR-ARLR--RRFDELFEEYDALLTPTTPVPAPPIGEPSPLGPDYTALWNLLDFTA 400 (441)
T ss_dssp HHHHHHHHHHHCTTTTTTHHHHHHHHH-HHHH--HHHHHHHHHSSEEEEESSSSS-BBTTTTCCCTSCHHHHHHHHTTTT
T ss_pred hhhhhhhhhhhhccccHHHHHHHHHHH-HHHH--HHHHHHHhhcceecccCCCcCCCccccccccccchhhhhhhhhhhc
Confidence 2333333322222 123377777667 6788 999999999999999999999999986521 011245
Q ss_pred cchhhhhcCCCeEEecCCcCCCCCceeEEE
Q psy179 215 YAMLANVIGFPSTNVPLGLGSNGLPVGLQV 244 (359)
Q Consensus 215 yT~~~NlLGlPAISVPvG~~~dGLPVGVQL 244 (359)
+|.++|++|+|+++||+|...+|||+|||+
T Consensus 401 ~t~~~n~~g~PaisvP~g~~~~GlPvGvql 430 (441)
T PF01425_consen 401 YTSPANLAGLPAISVPVGFDPDGLPVGVQL 430 (441)
T ss_dssp TTHHHHHHTHHEEEEEEEEETTTEEEEEEE
T ss_pred cccccccccCcceeeecCCCCCCcCEeEEE
Confidence 789999999999999999988899999988
No 28
>PRK06828 amidase; Provisional
Probab=99.33 E-value=7e-12 Score=129.42 Aligned_cols=96 Identities=15% Similarity=0.268 Sum_probs=77.0
Q ss_pred ccChHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEeCCCCCCcccCccccccccccccchhhhhcCCCeEEecCCcCC
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFGLKEILG--TDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGS 235 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~~~~lf~--~vDVLL~PT~p~~AP~~g~~~~~~~~~~yT~~~NlLGlPAISVPvG~~~ 235 (359)
..+..+|.++++.| ..++..+++.++|+ ++|+||+||++..+ ++|++|+|+++||+|+..
T Consensus 391 ~~~~~~y~~a~~~r-~~~~~~~~~~~~~~~~~~D~ll~Pt~~~~~-----------------~~~~~GlPaisvP~G~~~ 452 (491)
T PRK06828 391 TLRNPEYLNARLED-IYFSQEQGIDFALEKYNLDAILFPSYIGST-----------------ICAKAGYPSIAIPAGYME 452 (491)
T ss_pred CCChHHHHHHHHHH-HHhhhHHHHHHHHHhcCCCEEEeCCCCccc-----------------chhhcCCCeEEeecCCCC
Confidence 34567788888766 44321158999998 48999999987542 346999999999999988
Q ss_pred CCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCCCCCCC
Q psy179 236 NGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWS 315 (359)
Q Consensus 236 dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (359)
+|||+|+||
T Consensus 453 ~GlPvGlQl----------------------------------------------------------------------- 461 (491)
T PRK06828 453 GGRPFGITL----------------------------------------------------------------------- 461 (491)
T ss_pred CCcCeEEEE-----------------------------------------------------------------------
Confidence 899999888
Q ss_pred CceeEeecCCCchHHHHHHHHHHHHHhcCCCCC
Q psy179 316 PALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMP 348 (359)
Q Consensus 316 Pv~vQVVgrr~~De~lLavAk~lE~~l~~~~~~ 348 (359)
+|++++|.+||++|..+|++...+.+|
T Consensus 462 ------ig~~~~D~~LL~~A~a~E~~~~~r~~P 488 (491)
T PRK06828 462 ------ASTAFSEGTLIKLAYAFEQATKHRKIP 488 (491)
T ss_pred ------ECCCCCHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999999999999996433444
No 29
>PRK06707 amidase; Provisional
Probab=99.22 E-value=6.1e-11 Score=123.84 Aligned_cols=92 Identities=18% Similarity=0.270 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEeCCCCCCcccCccccccccccccchhhhhcCCCeEEecCCcCCCCCc
Q psy179 162 RTWDHLLEKLMMDLRVFFGLKEILG--TDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLP 239 (359)
Q Consensus 162 ~ey~~al~~Ra~~lR~~~~~~~lf~--~vDVLL~PT~p~~AP~~g~~~~~~~~~~yT~~~NlLGlPAISVPvG~~~dGLP 239 (359)
++|.....+.+..++ +.+.++|+ ++|+||+|.. ..|.++|++|+|+++||+|++.+|+|
T Consensus 442 ~~~~~~~~~~r~~~~--~~~~~~~~~~~~Dall~p~~-----------------~~t~~an~aG~PaitvP~G~~~~GlP 502 (536)
T PRK06707 442 DEFEKVVQTSQENAK--KELDRYLVEKGLDALVMINN-----------------EEVLLSAVAGYPELAVPAGYDNNGEP 502 (536)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHhhCCCCEEEecCC-----------------CcchhhHhcCCCeEEEecccCCCCCC
Confidence 344433333225667 78999997 8999999731 13788999999999999999888999
Q ss_pred eeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCCCCCCCCcee
Q psy179 240 VGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPALH 319 (359)
Q Consensus 240 VGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~v 319 (359)
+|+||
T Consensus 503 ~Glql--------------------------------------------------------------------------- 507 (536)
T PRK06707 503 VGAVF--------------------------------------------------------------------------- 507 (536)
T ss_pred eEEEE---------------------------------------------------------------------------
Confidence 99998
Q ss_pred EeecCCCchHHHHHHHHHHHHHhcCCCCCC
Q psy179 320 KVMAGPNQDRLCLAVAKKLEDIFYGWTMPN 349 (359)
Q Consensus 320 QVVgrr~~De~lLavAk~lE~~l~~~~~~~ 349 (359)
+|++|+|.+||++|..+|++...+.+|.
T Consensus 508 --ig~~~~e~~LL~~A~~~E~~~~~r~~p~ 535 (536)
T PRK06707 508 --VGKQFGEKELFNIGYAYEQQSKNRKPPK 535 (536)
T ss_pred --ECCCCChHHHHHHHHHHHHhCcCCCCCC
Confidence 9999999999999999999987777763
No 30
>PRK11910 amidase; Provisional
Probab=99.15 E-value=4e-10 Score=119.46 Aligned_cols=84 Identities=19% Similarity=0.290 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHhc--CCCEEEeCCCCCCcccCccccccccccccchhhhhcCCCeEEecCCcCC-CCCceeEEEeeccc
Q psy179 173 MDLRVFFGLKEILG--TDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGS-NGLPVGLQVCETAS 249 (359)
Q Consensus 173 ~~lR~~~~~~~lf~--~vDVLL~PT~p~~AP~~g~~~~~~~~~~yT~~~NlLGlPAISVPvG~~~-dGLPVGVQL~~~~~ 249 (359)
..++ +.++++|. ++|+||+|+... ......+++|+|+++||+|++. +|+|+|+|+
T Consensus 528 ~~~~--~~l~~~~~~~~lDalv~P~~~~---------------~~~~~~~~aG~PaItVP~G~~~~~GlPvGlql----- 585 (615)
T PRK11910 528 QSSQ--NELDSVLQKDKLDAVVTIGMGG---------------SVMFLAPIAGNPELTIPAGYDEESNQPISLTF----- 585 (615)
T ss_pred HHHH--HHHHHHHHHCCCcEEEeCCCCC---------------cchhhhhhcCCCeEEecccCCCCCCcCeEEEE-----
Confidence 4566 77888885 799999996311 0112345899999999999986 699999999
Q ss_pred ccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCCCCCCCCceeEeecCCCchH
Q psy179 250 VAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPALHKVMAGPNQDR 329 (359)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vQVVgrr~~De 329 (359)
+|++|+|+
T Consensus 586 ------------------------------------------------------------------------iG~~~sE~ 593 (615)
T PRK11910 586 ------------------------------------------------------------------------ITARNSDK 593 (615)
T ss_pred ------------------------------------------------------------------------ECCCCCHH
Confidence 99999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCC
Q psy179 330 LCLAVAKKLEDIFYGWTMPNS 350 (359)
Q Consensus 330 ~lLavAk~lE~~l~~~~~~~~ 350 (359)
.||++|..+|++...+..|..
T Consensus 594 ~LL~~A~a~Eq~t~~r~~P~~ 614 (615)
T PRK11910 594 ILLNMGYAYEQQSKNRKSPNL 614 (615)
T ss_pred HHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999988887764
No 31
>PRK06565 amidase; Validated
Probab=98.95 E-value=5.2e-09 Score=110.21 Aligned_cols=95 Identities=22% Similarity=0.347 Sum_probs=74.3
Q ss_pred HHHHHhc--CCCEEEeCCCCCCcccCcccccc-------cc-ccccchh-hhhcCCCeEEecCCcC-CCCCceeEEEeec
Q psy179 180 GLKEILG--TDGVLIYPTFPAQAQRHGEILLT-------TS-GVYYAML-ANVIGFPSTNVPLGLG-SNGLPVGLQVCET 247 (359)
Q Consensus 180 ~~~~lf~--~vDVLL~PT~p~~AP~~g~~~~~-------~~-~~~yT~~-~NlLGlPAISVPvG~~-~dGLPVGVQL~~~ 247 (359)
.+.+.|. ++|+||+|+.+..+|..+..... .+ ..+.+.. .+.+|+|+|+||+|+. +.|||+|+++
T Consensus 457 ~~e~~~~~~~lDalv~P~~~~~~~~~~~~~~~~~~~~~~~g~~~~ng~~a~~~~G~P~vtVP~G~~~~~G~PvGl~~--- 533 (566)
T PRK06565 457 DLEDWMDGLGLDAVLFPTVADVGPADADVNPASADIAWSNGVWVANGNLAIRHLGVPTVTVPMGVMADIGMPVGLTF--- 533 (566)
T ss_pred HHHHHHHhcCCCEEEeCCCCCCccccccccchhhhhccccCcccccchhhHHhcCCCeeEeeccccCCCCCCeeEEe---
Confidence 4556664 68999999999988876643111 00 1233344 4899999999999987 5799999988
Q ss_pred ccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCCCCCCCCceeEeecCCCc
Q psy179 248 ASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPALHKVMAGPNQ 327 (359)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vQVVgrr~~ 327 (359)
+|++|+
T Consensus 534 --------------------------------------------------------------------------~G~a~~ 539 (566)
T PRK06565 534 --------------------------------------------------------------------------AGRAYD 539 (566)
T ss_pred --------------------------------------------------------------------------ecCCcc
Confidence 999999
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCC
Q psy179 328 DRLCLAVAKKLEDIFYGWTMPNST 351 (359)
Q Consensus 328 De~lLavAk~lE~~l~~~~~~~~~ 351 (359)
|.+||++|..+|++.+..+.|..+
T Consensus 540 e~~Ll~~A~a~E~~~~~r~~p~~~ 563 (566)
T PRK06565 540 DNALLRFAAAFEATGSRRMVPPRT 563 (566)
T ss_pred hHHHHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999999888877655
No 32
>KOG1211|consensus
Probab=98.60 E-value=8.8e-08 Score=99.59 Aligned_cols=62 Identities=34% Similarity=0.559 Sum_probs=46.2
Q ss_pred HHhcCCCEEEeCCCCCCcccCccc----cccccccccchhhhhcCCCeEEecCCcCCCCCceeEEE
Q psy179 183 EILGTDGVLIYPTFPAQAQRHGEI----LLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQV 244 (359)
Q Consensus 183 ~lf~~vDVLL~PT~p~~AP~~g~~----~~~~~~~~yT~~~NlLGlPAISVPvG~~~dGLPVGVQL 244 (359)
+.++++|+|+.||.|.+.+...+. ........++.++|+.|+|+++||+|...+|+|+|+|+
T Consensus 409 ~~~~~vD~l~~pt~~~~~~~~~~~~~~~~~~~~~~~~~~~anlaGlP~isiP~G~~~~g~P~glqi 474 (506)
T KOG1211|consen 409 AALEGVDYLVTPTAPPPLYREFEKETLFAVSTLDDIFTQPANLAGLPAISIPVGLKNGGLPIGLQI 474 (506)
T ss_pred cccccCCeeeccCCCCcchhhhhhcccccccccccceeecccccCCCceEEeeeecCCCCceEEEe
Confidence 466789999999944333322221 11223467899999999999999999999999999888
Done!