Query psy179
Match_columns 359
No_of_seqs 290 out of 1908
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 16:59:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy179.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/179hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ppm_A Fatty-acid amide hydrol 99.8 7.8E-19 2.7E-23 182.2 15.3 211 75-348 339-572 (573)
2 3kfu_E Glutamyl-tRNA(Gln) amid 99.8 5.5E-19 1.9E-23 179.0 10.0 109 162-351 356-467 (471)
3 1o9p_A Malonamidase E2; malona 99.8 1.8E-18 6.1E-23 172.5 10.6 170 74-344 241-412 (414)
4 2dc0_A Probable amidase; struc 99.7 1.1E-18 3.7E-23 174.8 8.5 148 74-244 255-412 (434)
5 3a2q_A 6-aminohexanoate-cyclic 99.7 5.7E-18 1.9E-22 171.8 11.7 85 157-244 352-453 (493)
6 3a1k_A Amidase; AS family enzy 99.7 2E-17 6.7E-22 169.5 12.1 110 159-349 391-508 (521)
7 3ip4_A Glutamyl-tRNA(Gln) amid 99.7 2.5E-17 8.5E-22 167.0 11.5 103 162-346 373-479 (485)
8 2gi3_A Glutamyl-tRNA(Gln) amid 99.7 3.5E-17 1.2E-21 165.4 11.1 103 163-347 360-465 (476)
9 3h0l_A Glutamyl-tRNA(Gln) amid 99.7 3.5E-17 1.2E-21 166.0 10.7 79 162-244 366-448 (478)
10 1m22_A Peptide amidase, PAM; e 99.6 3.6E-16 1.2E-20 159.1 11.6 109 158-349 379-491 (503)
No 1
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH, oxazole, oxadiazole, endoca degradation, membrane protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB: 2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A* 2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A* 3qj9_A* 3qkv_A*
Probab=99.79 E-value=7.8e-19 Score=182.20 Aligned_cols=211 Identities=17% Similarity=0.130 Sum_probs=131.1
Q ss_pred hHHHHHHHHhhhcccccccCCCccchhhh---------cCCccceehhhhhhhhhhhcccccCCCccccccccc------
Q psy179 75 DLEKYCTLLTTLQDKFEVIPKPKLDSAMH---------NGGSRLVQCNVQCMQMLCTLHCTSLDPPLHVKSNLT------ 139 (359)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~g~~~~~~~~~~~~~~~~~h~~~~~p~~~~k~~l~------ 139 (359)
.+++-++.|+.+|..++++..|.++.++. +||..+ ++. ++...++|.++.-..+.
T Consensus 339 a~~~a~~~L~~~G~~v~~~~~p~~~~~~~~~~~~~~~~dg~~~~-------~~~---~~~e~~~p~~~~~~~~~~lp~~l 408 (573)
T 3ppm_A 339 ALIETKQRLEAAGHTLIPFLPNNIPYALEVLSTGGLFSDGGRSF-------LQN---FKGDFVDPCLGDLILILRLPSWF 408 (573)
T ss_dssp HHHHHHHHHHHTTCEEEECCCTTHHHHHHTHHHHHHTTBTTHHH-------HGG---GTTSCCCGGGTTHHHHHTSCHHH
T ss_pred HHHHHHHHHHHCCCEEEEecCccHHHHHHHHHHHHHhhhhHHHH-------HHH---hccCcccHHHHHHhhhccchHHH
Confidence 45677888999999999999998776542 333332 122 22334555543100000
Q ss_pred ----cccccccccch-hhhhhhcccChHHHHHHHHHHHHHHHHHHHHHHHhc--CCCEEEeCCCCCCcccCccccccccc
Q psy179 140 ----NANVFHVSENF-CTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILG--TDGVLIYPTFPAQAQRHGEILLTTSG 212 (359)
Q Consensus 140 ----~~~~~~v~~rf-~~~~rl~~~~~~ey~~al~~Ra~~lR~~~~~~~lf~--~vDVLL~PT~p~~AP~~g~~~~~~~~ 212 (359)
..++..+..++ .........+..+++++..++ +++| ++|.+.|. ++|+||||+ +.+|++|+.+......
T Consensus 409 ~~~~~~~~~~~~p~~~~~~~~~~~~s~~e~~~~~~~r-~~~r--~~~~~~w~~~~lDaLL~Pt-~~pA~~h~~~~~~~~~ 484 (573)
T 3ppm_A 409 KRLLSLLLKPLFPRLAAFLNNMRPRSAEKLWKLQHEI-EMYR--QSVIAQWKAMNLDVLLTPM-LGPALDLNTPGRATGA 484 (573)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHTSBCBHHHHHHHHHHH-HHHH--HHHHHHHHHTTCSEEEEEC-CCSCCBTTCGGGCGGG
T ss_pred HHHHHHHhhhcchHHHHHHhhcccccHHHHHHHHHHH-HHHH--HHHHHHHhhcCCCEeeCCC-CCCCcCCccccccccc
Confidence 00000000111 111233345677888888888 8899 99999995 599999999 5589998864333345
Q ss_pred cccchhhhhcCCCeEEecCCcCCCCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhc
Q psy179 213 VYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQV 292 (359)
Q Consensus 213 ~~yT~~~NlLGlPAISVPvG~~~dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 292 (359)
..||.+||++|+|+++||+|+.+.. .+ ...+++++ .+.+ .+.+.
T Consensus 485 ~~YT~l~NLLDyPA~vVPvg~v~~~------~d-----------~~~~~~~~------~~~~-----------~~d~~-- 528 (573)
T 3ppm_A 485 VSYTMLYNCLDFPAGVVPVTTVTAE------DD-----------AQMELYKG------YFGD-----------IWDII-- 528 (573)
T ss_dssp GHHHHHHHHTTCCEEEEEEEECCHH------HH-----------HHHTTCCC------SSCS-----------HHHHH--
T ss_pred cchhhhhHhhCCCeEEEeccccccc------cc-----------cccccccc------ccch-----------hhhhh--
Confidence 6899999999999999999875321 00 00001100 0000 01111
Q ss_pred cchhhhhhhHHHhhhcCCCCC-CCCceeEeecCCCchHHHHHHHHHHHHHhcCCCCC
Q psy179 293 KGFIDIKLMFVVKITSHLGDY-WSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMP 348 (359)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~-~~Pv~vQVVgrr~~De~lLavAk~lE~~l~~~~~~ 348 (359)
.++ .++.+ |+||||||||+||+||+||++|++||+++++...|
T Consensus 529 -----------~~~--~~~~~~GlPVgVQiVGrr~~EEklL~~a~~IE~~l~~~~~~ 572 (573)
T 3ppm_A 529 -----------LKK--AMKNSVGLPVAVQCVALPWQEELCLRFMREVEQLMTPQKQP 572 (573)
T ss_dssp -----------HHH--HTCSCTTCEEEEEEECCTTCHHHHHHHHHHHHHHHCTTSCC
T ss_pred -----------hhh--hhhccCCCceEEEEeCCCCcHHHHHHHHHHHHHHHhcccCC
Confidence 111 13445 69999999999999999999999999999887655
No 2
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Probab=99.77 E-value=5.5e-19 Score=179.03 Aligned_cols=109 Identities=23% Similarity=0.275 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc---cccccccchhhhhcCCCeEEecCCcCCCCC
Q psy179 162 RTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL---TTSGVYYAMLANVIGFPSTNVPLGLGSNGL 238 (359)
Q Consensus 162 ~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~---~~~~~~yT~~~NlLGlPAISVPvG~~~dGL 238 (359)
.+|.++++.| .+++ +++.++|+++|+||+||+|.+||+++.... .+....||.+||++|+|+++||+|+ .+||
T Consensus 356 ~~~~~a~~~r-~~~~--~~~~~~~~~~Dvll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~Gl 431 (471)
T 3kfu_E 356 AYYGRAQAFR-RRLK--AEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGF-EGHL 431 (471)
T ss_dssp TTHHHHHHHH-HHHH--HHHHHHTTTCSEEEEESCSSSCCBTTTTCSHHHHHGGGTTTHHHHHHCCCEEEEEEEE-ETTE
T ss_pred HHHHHHHHHH-HHHH--HHHHHHHhcCCEEEeCCcCCCCCccccccchHHHHHHhhhhhcchhhCCCeEEEeCCC-CCCC
Confidence 4688888777 7888 999999999999999999999999976311 1222349999999999999999999 8999
Q ss_pred ceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCCCCCCCCce
Q psy179 239 PVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPAL 318 (359)
Q Consensus 239 PVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~ 318 (359)
|+|+||
T Consensus 432 PvGlQl-------------------------------------------------------------------------- 437 (471)
T 3kfu_E 432 PVGLQL-------------------------------------------------------------------------- 437 (471)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred CeEEEE--------------------------------------------------------------------------
Confidence 999998
Q ss_pred eEeecCCCchHHHHHHHHHHHHHhcCCCCCCCC
Q psy179 319 HKVMAGPNQDRLCLAVAKKLEDIFYGWTMPNST 351 (359)
Q Consensus 319 vQVVgrr~~De~lLavAk~lE~~l~~~~~~~~~ 351 (359)
||++++|++||++|+.+|++.++|......
T Consensus 438 ---vg~~~~D~~LL~~A~~lE~~~g~w~~~~p~ 467 (471)
T 3kfu_E 438 ---LAPWGEDERLLRAALAFEEATARAHLKAPL 467 (471)
T ss_dssp ---ECSTTCHHHHHHHHHHHHHHSSCCCCCTTC
T ss_pred ---ECCCCCHHHHHHHHHHHHHHhcCcccCCCc
Confidence 999999999999999999999788654433
No 3
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP: c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A 1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Probab=99.75 E-value=1.8e-18 Score=172.46 Aligned_cols=170 Identities=22% Similarity=0.219 Sum_probs=120.5
Q ss_pred hhHHHHHHHHhhhcccccccCCCcc-chhhhcCCccceehhh-hhhhhhhhcccccCCCccccccccccccccccccchh
Q psy179 74 SDLEKYCTLLTTLQDKFEVIPKPKL-DSAMHNGGSRLVQCNV-QCMQMLCTLHCTSLDPPLHVKSNLTNANVFHVSENFC 151 (359)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~-~~~~~~~~~h~~~~~p~~~~k~~l~~~~~~~v~~rf~ 151 (359)
..+++.++.|+.++..+++++.|.. +..+.-. ..+...+. +-+......|...++|.. ..++.
T Consensus 241 ~a~~~a~~~L~~~G~~v~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~--------------~~~~~ 305 (414)
T 1o9p_A 241 QGLQAAIKAAERAGASVQAIDLPEAVHEAWRIH-PIIQDFEAHRALAWEFSEHHDEIAPML--------------RASLD 305 (414)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCHHHHHHHHHH-HHHHHHHHHHHTHHHHHHSGGGSCHHH--------------HHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEecCcchHHHHHHHH-HHHHHHHHHHHHHHHHHhChhhcCHHH--------------HHHHH
Confidence 3467788889999999999888743 2211100 00111110 001111112223344432 22332
Q ss_pred hhhhhcccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccccccccccchhhhhcCCCeEEecC
Q psy179 152 TDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPL 231 (359)
Q Consensus 152 ~~~rl~~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~~~~~~~yT~~~NlLGlPAISVPv 231 (359)
.....+..+|.++++.| .+++ +++.++|+++|+||+|++|.+||+++... .....||.+||++|+|+++||+
T Consensus 306 ---~g~~~~~~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~--~~~~~~t~~~nl~G~PaisvP~ 377 (414)
T 1o9p_A 306 ---ATVGLTPKEYDEARRIG-RRGR--RELGEVFEGVDVLLTYSAPGTAPAKALAS--TGDPRYNRLWTLMGNPCVNVPV 377 (414)
T ss_dssp ---HTTTCCHHHHHHHHHHH-HHHH--HHHHHHTTTCSEEEEESSSSSCCBGGGCC--CCCGGGTHHHHHHCCCEEEEEE
T ss_pred ---hccCCCHHHHHHHHHHH-HHHH--HHHHHHHcCCCEEEeCCCCCCCCcccccC--CcccchhhhhHhcCCCeEEeeC
Confidence 23345678899999888 8888 99999999999999999999999986531 1234799999999999999999
Q ss_pred CcCCCCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCCC
Q psy179 232 GLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLG 311 (359)
Q Consensus 232 G~~~dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (359)
|++. |+|+|+||
T Consensus 378 g~~~-GlPvGvql------------------------------------------------------------------- 389 (414)
T 1o9p_A 378 LKVG-GLPIGVQV------------------------------------------------------------------- 389 (414)
T ss_dssp EEET-TEEEEEEE-------------------------------------------------------------------
T ss_pred CCCC-CCCeEEEE-------------------------------------------------------------------
Confidence 9877 99999888
Q ss_pred CCCCCceeEeecCCCchHHHHHHHHHHHHHhcC
Q psy179 312 DYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYG 344 (359)
Q Consensus 312 ~~~~Pv~vQVVgrr~~De~lLavAk~lE~~l~~ 344 (359)
||++++|++||++|+.+|+++++
T Consensus 390 ----------vg~~~~d~~lL~~a~~le~~~~g 412 (414)
T 1o9p_A 390 ----------IARFGNDAHALATAWFLEDALAK 412 (414)
T ss_dssp ----------EESTTCHHHHHHHHHHHHHHHHC
T ss_pred ----------ECCCCChHHHHHHHHHHHHHhcC
Confidence 99999999999999999999876
No 4
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Thermus thermophilus}
Probab=99.75 E-value=1.1e-18 Score=174.81 Aligned_cols=148 Identities=20% Similarity=0.324 Sum_probs=99.3
Q ss_pred hhHHHHHHHHhhhcccccccCCCccchhhhcCCccceehhh-hhhhhhhhcccccCCCccccccccccccccccccchhh
Q psy179 74 SDLEKYCTLLTTLQDKFEVIPKPKLDSAMHNGGSRLVQCNV-QCMQMLCTLHCTSLDPPLHVKSNLTNANVFHVSENFCT 152 (359)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~h~~~~~p~~~~k~~l~~~~~~~v~~rf~~ 152 (359)
..+++.++.|+.++..++++..| ++..+... ..+...+. +-.......|...++|.. ..++.
T Consensus 255 ~a~~~a~~~L~~~G~~v~~~~~p-~~~~~~~~-~~~~~~e~~~~~~~~~~~~~~~~~~~~--------------~~~~~- 317 (434)
T 2dc0_A 255 KAFTRLLEDLPALRAEVREVSLP-LEGVYEVY-TRLVRYEAARIHEKALKEHPEGFSPQV--------------REALL- 317 (434)
T ss_dssp HHHHHHHHHTTTTTCEEEECCCC-CTTHHHHH-HHHHHHHHHHHSHHHHHHCGGGSCHHH--------------HHHHH-
T ss_pred HHHHHHHHHHHHCCCEEEEeCCC-cHHHHHHH-HHHHHHHHHHHHHHHHHhchhhcCHHH--------------HHHHH-
Confidence 35677788889999999999888 66432210 00111110 000111112222333332 12232
Q ss_pred hhhhcccChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc--------cccc-cccchhhhhcC
Q psy179 153 DTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL--------TTSG-VYYAMLANVIG 223 (359)
Q Consensus 153 ~~rl~~~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~--------~~~~-~~yT~~~NlLG 223 (359)
.....+..+|.++++.| .+++ +++.++|+++|+||+|++|.+||+++.... .+.. ..||.+||++|
T Consensus 318 --~g~~~~~~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G 392 (434)
T 2dc0_A 318 --AGLALTEKDYRDAVAER-EALR--LELVKALRGVDALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLG 392 (434)
T ss_dssp --HHHHSCHHHHHHHHHHH-HHHH--HHHHHHHTTSSEEEEESCSSSCCBTTCCEEEETTEEEEHHHHHHTTTHHHHHTT
T ss_pred --hcCCCCHHHHHHHHHHH-HHHH--HHHHHHHhcCCEEEECCCCCCCccCcccccccccchhhhhhhhhhhhhhhhhhC
Confidence 23345778899998888 8888 999999999999999999999999876421 0111 56899999999
Q ss_pred CCeEEecCCcCCCCCceeEEE
Q psy179 224 FPSTNVPLGLGSNGLPVGLQV 244 (359)
Q Consensus 224 lPAISVPvG~~~dGLPVGVQL 244 (359)
+|+++||+|+ .+|||+|+||
T Consensus 393 ~PaisvP~g~-~~GlPvGvql 412 (434)
T 2dc0_A 393 VPTLALPFAK-VEGMPVGLQV 412 (434)
T ss_dssp CCEEEEEEEE-ETTEEEEEEE
T ss_pred CCeEEEecCC-CCCCCeEEEE
Confidence 9999999998 7899999888
No 5
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Probab=99.74 E-value=5.7e-18 Score=171.83 Aligned_cols=85 Identities=25% Similarity=0.453 Sum_probs=72.0
Q ss_pred cccChHHHHHHHHHHHHHHHHHHHHHHHh-cCCCEEEeCCCCCCcccCcccccc---------------c-cccccchhh
Q psy179 157 VMAYSRTWDHLLEKLMMDLRVFFGLKEIL-GTDGVLIYPTFPAQAQRHGEILLT---------------T-SGVYYAMLA 219 (359)
Q Consensus 157 ~~~~~~ey~~al~~Ra~~lR~~~~~~~lf-~~vDVLL~PT~p~~AP~~g~~~~~---------------~-~~~~yT~~~ 219 (359)
...+..+|.++++.| .+++ +++.++| +++|+||+||+|.+||++++.... + ....||.+|
T Consensus 352 ~~~~~~~~~~a~~~r-~~~~--~~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~ 428 (493)
T 3a2q_A 352 DQVTGRAFAACVDEL-RYYA--GKVERWWEAGWDLLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPF 428 (493)
T ss_dssp HTCCHHHHHHHHHHH-HHHH--HHHHHHHHTTCCEEEEESCSSCCCBTTTTCCCTTCCCCSSCGGGSHHHHHHHTTTTHH
T ss_pred ccCCHHHHHHHHHHH-HHHH--HHHHHHHhcCCCEEEcCCCCCCCCCCcccccccccccccccchhhhhhhhhhcccccc
Confidence 345678899999888 8888 9999999 999999999999999999753210 0 114689999
Q ss_pred hhcCCCeEEecCCcCCCCCceeEEE
Q psy179 220 NVIGFPSTNVPLGLGSNGLPVGLQV 244 (359)
Q Consensus 220 NlLGlPAISVPvG~~~dGLPVGVQL 244 (359)
|++|+|+++||+|++.+|||+|+||
T Consensus 429 nl~G~PaisvP~g~~~~GlPvGvQl 453 (493)
T 3a2q_A 429 NVSGQPAISLPIGMSSDGMPIGVQI 453 (493)
T ss_dssp HHHCCCEEEEEEEECTTSCEEEEEE
T ss_pred cccCCCceeccCCcCCCCCCeEEEE
Confidence 9999999999999988999999998
No 6
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB: 3a1i_A
Probab=99.72 E-value=2e-17 Score=169.53 Aligned_cols=110 Identities=25% Similarity=0.310 Sum_probs=93.6
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc--------cccccccchhhhhcCCCeEEec
Q psy179 159 AYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL--------TTSGVYYAMLANVIGFPSTNVP 230 (359)
Q Consensus 159 ~~~~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~--------~~~~~~yT~~~NlLGlPAISVP 230 (359)
....+|.++++.| .+++ +++.++|+++|+||+||+|.+||++++... ......||.+||++|+|+++||
T Consensus 391 ~~~~~~~~a~~~r-~~~~--~~~~~~~~~~Dvll~Pt~p~~a~~~~~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP 467 (521)
T 3a1k_A 391 LGGASYGKARNLV-PLAR--AAYDTALRQFDVLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVP 467 (521)
T ss_dssp TTTHHHHHHHHHH-HHHH--HHHHHHHHHCSEEEEESCSSCCCBCCCTTCCHHHHHHHHHTTCTTTHHHHHHCCCEEEEE
T ss_pred CCHHHHHHHHHHH-HHHH--HHHHHHhcCCCEEEECCCCCCCcccccccCchhhHHHHHHhhhcccccchhcCCCcEEee
Confidence 4456788888777 8888 999999999999999999999999976310 0112468999999999999999
Q ss_pred CCcCCCCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCC
Q psy179 231 LGLGSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHL 310 (359)
Q Consensus 231 vG~~~dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (359)
+|+ .+|||+|+||
T Consensus 468 ~g~-~~GlPvGlQl------------------------------------------------------------------ 480 (521)
T 3a1k_A 468 AGL-VNGLPVGMMI------------------------------------------------------------------ 480 (521)
T ss_dssp EEE-ETTEEEEEEE------------------------------------------------------------------
T ss_pred ccc-CCCCCeeEEE------------------------------------------------------------------
Confidence 998 6899999888
Q ss_pred CCCCCCceeEeecCCCchHHHHHHHHHHHHHhcCCCCCC
Q psy179 311 GDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPN 349 (359)
Q Consensus 311 ~~~~~Pv~vQVVgrr~~De~lLavAk~lE~~l~~~~~~~ 349 (359)
||++|+|++||++|+.+|++..+|..|-
T Consensus 481 -----------vg~~~~d~~LL~~A~~~E~~~~~~~~~~ 508 (521)
T 3a1k_A 481 -----------TGRHFDDATVLRVGRAFEKLRGAFPTPA 508 (521)
T ss_dssp -----------ECSTTCHHHHHHHHHHHHHHHCCCCCTT
T ss_pred -----------EcCCCCHHHHHHHHHHHHHhhcccCCcc
Confidence 9999999999999999999667887653
No 7
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: c.117.1.1 PDB: 2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Probab=99.71 E-value=2.5e-17 Score=166.97 Aligned_cols=103 Identities=22% Similarity=0.352 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc----cccccccchhhhhcCCCeEEecCCcCCCC
Q psy179 162 RTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL----TTSGVYYAMLANVIGFPSTNVPLGLGSNG 237 (359)
Q Consensus 162 ~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~----~~~~~~yT~~~NlLGlPAISVPvG~~~dG 237 (359)
..|.++++.| .+++ +++.++|+++|+||+||+|.+||++++... .+....||.+||++|+|+++||+|++ +|
T Consensus 373 ~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~G 448 (485)
T 3ip4_A 373 AYYKKSQKVR-TLIK--NDFDKVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQS-NG 448 (485)
T ss_dssp TTHHHHHHHH-HHHH--HHHHHHHTTCSEEEEESSSSSCCBTTTSTTCHHHHHGGGTTTHHHHHHTCCEEEEEEEEE-TT
T ss_pred HHHHHHHHHH-HHHH--HHHHHHHhcCCEEEeCCCCCCCCCcccccCChHHHhhhhhhhhhhHhhCCCeEEEeCCcC-CC
Confidence 3467777777 7888 999999999999999999999999986321 11223599999999999999999986 89
Q ss_pred CceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCCCCCCCCc
Q psy179 238 LPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPA 317 (359)
Q Consensus 238 LPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv 317 (359)
||+|+||
T Consensus 449 lPvGlql------------------------------------------------------------------------- 455 (485)
T 3ip4_A 449 RPIGLQF------------------------------------------------------------------------- 455 (485)
T ss_dssp EEEEEEE-------------------------------------------------------------------------
T ss_pred CCEeEEE-------------------------------------------------------------------------
Confidence 9999888
Q ss_pred eeEeecCCCchHHHHHHHHHHHHHhcCCC
Q psy179 318 LHKVMAGPNQDRLCLAVAKKLEDIFYGWT 346 (359)
Q Consensus 318 ~vQVVgrr~~De~lLavAk~lE~~l~~~~ 346 (359)
||++++|++||++|+.+|+++ +|.
T Consensus 456 ----vg~~~~d~~lL~~A~~lE~~~-~~~ 479 (485)
T 3ip4_A 456 ----IGKPFDEKTLYRVAYQYETQY-NLH 479 (485)
T ss_dssp ----ECSTTCHHHHHHHHHHHHHHS-CCT
T ss_pred ----EcCCCCHHHHHHHHHHHHHhc-Ccc
Confidence 999999999999999999998 464
No 8
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural genomics, joint center for structura genomics, JCSG; HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP: c.117.1.1 PDB: 3al0_A*
Probab=99.70 E-value=3.5e-17 Score=165.35 Aligned_cols=103 Identities=27% Similarity=0.431 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccc---cccccccccchhhhhcCCCeEEecCCcCCCCCc
Q psy179 163 TWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEI---LLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLP 239 (359)
Q Consensus 163 ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~---~~~~~~~~yT~~~NlLGlPAISVPvG~~~dGLP 239 (359)
+|.++++.| .+++ +++.++|+++|+||+||+|.+||++++. ...+....||.+||++|+|+++||+|++ +|||
T Consensus 360 ~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~~-~GlP 435 (476)
T 2gi3_A 360 YFNKAMKVR-RKIS--DELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYLMDIFTIPANLAGLPAISVPFGFS-NNLP 435 (476)
T ss_dssp HHHHHHHHH-HHHH--HHHHHHHHHSSEEEEESCSSCCCBTTTCCCHHHHHTTTTTTHHHHHHTCCEEEEEEEEE-TTEE
T ss_pred HHHHHHHHH-HHHH--HHHHHHHhcCCEEEeCCCCCCCCcccccccchhhhhccceeccccccCCceEEEecccC-CCCC
Confidence 677777777 7888 9999999999999999999999999751 1112234789999999999999999985 7888
Q ss_pred eeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCCCCCCCCcee
Q psy179 240 VGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDYWSPALH 319 (359)
Q Consensus 240 VGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~v 319 (359)
+|+||
T Consensus 436 vGvql--------------------------------------------------------------------------- 440 (476)
T 2gi3_A 436 VGVQV--------------------------------------------------------------------------- 440 (476)
T ss_dssp EEEEE---------------------------------------------------------------------------
T ss_pred eEEEE---------------------------------------------------------------------------
Confidence 88888
Q ss_pred EeecCCCchHHHHHHHHHHHHHhcCCCC
Q psy179 320 KVMAGPNQDRLCLAVAKKLEDIFYGWTM 347 (359)
Q Consensus 320 QVVgrr~~De~lLavAk~lE~~l~~~~~ 347 (359)
||++++|++||++|+.+|+++ +|..
T Consensus 441 --vg~~~~d~~lL~~A~~lE~~~-~~~~ 465 (476)
T 2gi3_A 441 --IGRRFADGKVFRIARAIEKNS-PYNE 465 (476)
T ss_dssp --ECCTTCHHHHHHHHHHHHHHC-TTSB
T ss_pred --EcCCCCHHHHHHHHHHHHHhc-Cccc
Confidence 999999999999999999997 5543
No 9
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Probab=99.70 E-value=3.5e-17 Score=165.98 Aligned_cols=79 Identities=23% Similarity=0.311 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCCcccCccccc----cccccccchhhhhcCCCeEEecCCcCCCC
Q psy179 162 RTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILL----TTSGVYYAMLANVIGFPSTNVPLGLGSNG 237 (359)
Q Consensus 162 ~ey~~al~~Ra~~lR~~~~~~~lf~~vDVLL~PT~p~~AP~~g~~~~----~~~~~~yT~~~NlLGlPAISVPvG~~~dG 237 (359)
..|.++++.| .+++ +++.++|+++|+||+||+|.+||++++... .+....||.+||++|+|+++||+|+ .+|
T Consensus 366 ~~~~~a~~~r-~~~~--~~~~~~~~~~D~ll~Pt~~~~a~~~~~~~~~~~~~~~~~~~t~~~nl~G~PaisvP~g~-~~G 441 (478)
T 3h0l_A 366 AYYLKAQKVR-RLIT--NDFLKAFEEVDVIASPTTPTLPFKFGERLENPIEMYLSDILTVPANLAGLPAISIPIAW-KDG 441 (478)
T ss_dssp TTHHHHHHHH-HHHH--HHHHHHTTTCSEEEEESCSSSCCBTTTTSSSHHHHHGGGTTTHHHHHHTCCEEEEEEEE-ETT
T ss_pred HHHHHHHHHH-HHHH--HHHHHHHhcCCEEEcCCCCCCCCCcccccCChHhhhhhhhhhhhhHhhCCCeEEEeCCC-CCC
Confidence 3577777777 7788 999999999999999999999999986321 1122359999999999999999999 789
Q ss_pred CceeEEE
Q psy179 238 LPVGLQV 244 (359)
Q Consensus 238 LPVGVQL 244 (359)
||+|+||
T Consensus 442 lPvGlQl 448 (478)
T 3h0l_A 442 LPVGGQL 448 (478)
T ss_dssp EEEEEEE
T ss_pred CCeEEEE
Confidence 9999988
No 10
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double layers of alpha helices on TOP and bottom, hydrolase; HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP: c.117.1.1 PDB: 1m21_A*
Probab=99.65 E-value=3.6e-16 Score=159.08 Aligned_cols=109 Identities=22% Similarity=0.146 Sum_probs=87.3
Q ss_pred ccChHHHHHHHHHHHHHHHHHHH--HHHHhcC--CCEEEeCCCCCCcccCccccccccccccchhhhhcCCCeEEecCCc
Q psy179 158 MAYSRTWDHLLEKLMMDLRVFFG--LKEILGT--DGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGL 233 (359)
Q Consensus 158 ~~~~~ey~~al~~Ra~~lR~~~~--~~~lf~~--vDVLL~PT~p~~AP~~g~~~~~~~~~~yT~~~NlLGlPAISVPvG~ 233 (359)
..+..+|.++++.+ .+++ ++ +.++|++ +|+||+||+ .++|+++..... ....||.+||++|+|+++||+|+
T Consensus 379 ~~~~~~~~~a~~~~-~~~~--~~~~~~~~~~~~~~D~ll~Pt~-~~a~~~~~~~~~-~~~~~t~~~nl~G~PaisvP~g~ 453 (503)
T 1m22_A 379 GLADPAYIRARSDA-RRLA--GPEGIDAALAAHQLDALVAPTT-GVAWPIRSEGDD-FPGESYSAAAVAGYPSLTVPMGQ 453 (503)
T ss_dssp CTTCHHHHHHHHHH-HHHH--TTTTHHHHHHHTTCSEEEEECC-CCCCBTTC---C-CTTCCHHHHHHHTCCEEEEEEEE
T ss_pred CCCHHHHHHHHHHH-HHHH--HHHHHHHHHhhcCCCEEEeCCC-ccCcccccccCc-ccccccccchhhCCCeEEecccc
Confidence 45677888888777 6665 55 9999974 999999999 567777532111 12578999999999999999998
Q ss_pred CCCCCceeEEEeecccccccccccccCCCCCCCCCCCccCCCCCCccccccchhhhhhccchhhhhhhHHHhhhcCCCCC
Q psy179 234 GSNGLPVGLQVCETASVAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSHLGDY 313 (359)
Q Consensus 234 ~~dGLPVGVQL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (359)
+ +|||+|+||
T Consensus 454 ~-~GlPvGvql--------------------------------------------------------------------- 463 (503)
T 1m22_A 454 I-DGLPVGLLF--------------------------------------------------------------------- 463 (503)
T ss_dssp E-TTEEEEEEE---------------------------------------------------------------------
T ss_pred C-CCCCeEEEE---------------------------------------------------------------------
Confidence 6 789988888
Q ss_pred CCCceeEeecCCCchHHHHHHHHHHHHHhcCCCCCC
Q psy179 314 WSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPN 349 (359)
Q Consensus 314 ~~Pv~vQVVgrr~~De~lLavAk~lE~~l~~~~~~~ 349 (359)
||++++|++||++|+.+|++++.+..|.
T Consensus 464 --------vg~~~~d~~lL~~A~~~E~~~~~~~~p~ 491 (503)
T 1m22_A 464 --------MGTAWSEPKLIEMAYAYEQRTRARRPPH 491 (503)
T ss_dssp --------ECSTTCHHHHHHHHHHHHHHHCCCCCCC
T ss_pred --------ECCCCChHHHHHHHHHHHHhhCCCCCCC
Confidence 9999999999999999999996555554
Done!