RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy179
(359 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 4e-10
Identities = 68/357 (19%), Positives = 116/357 (32%), Gaps = 79/357 (22%)
Query: 37 QPNTVAEFLKSLIGL-SSYTPHLLMFQTYIETSGFL------SQSDLEKYCT----LLTT 85
Q NT ++ + L L +Y + I+ S + D EK T +L
Sbjct: 163 QGNT-DDYFEELRDLYQTYHVLV---GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW 218
Query: 86 LQDKFEVIPKPKLDSAMHNGGSRLVQCN----VQCMQMLCTLHCTSLDPPLHVKSNLTNA 141
L++ K L S + C +Q + T P ++S L A
Sbjct: 219 LENPSNTPDKDYLLSI-------PISCPLIGVIQLAHYVVTAKLLGFTPG-ELRSYLKGA 270
Query: 142 NVFHVSENFCTD---TQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYP--TF 196
+ T + +A + +W+ + + V F +G YP +
Sbjct: 271 TG-------HSQGLVTAVAIAETDSWESFFVSVRKAITVLF----FIGVRCYEAYPNTSL 319
Query: 197 PA----QAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGS-NG-LPVGLQVCETASV 250
P + + E GV ML+ + V + N LP G QV +
Sbjct: 320 PPSILEDSLENNE------GVPSPMLS-ISNLTQEQVQDYVNKTNSHLPAGKQV----EI 368
Query: 251 AQCVTSFVANEHSPLIPS-TPQYLDNIDSPRRSMAVDYVWTQVK-GFIDIKLMFVVK--- 305
+ + N L+ S PQ L ++ R Q + F + KL F +
Sbjct: 369 S------LVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLP 422
Query: 306 ITS--HLGDYWSPALHKVMAGPNQDRLCLAVAKKL----EDIFYGWTMPNSTGMLVE 356
+ S H PA + ++ + AK + D F G + +G + E
Sbjct: 423 VASPFH-SHLLVPASDLINKDLVKNNVSFN-AKDIQIPVYDTFDGSDLRVLSGSISE 477
Score = 30.0 bits (67), Expect = 1.6
Identities = 20/122 (16%), Positives = 42/122 (34%), Gaps = 33/122 (27%)
Query: 10 ACMGKVFSIDDM--------NSLYSIIEPLSHSKSQ-------PNTVA-----EFLKSLI 49
A + V SI+ + ++ + +S P VA E L+ ++
Sbjct: 1771 ASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVV 1830
Query: 50 -GLSSYTPHLLM---F----QTYIETSGFLSQSDLEKYCTLLTTLQDKFEVIPKPKLDSA 101
+ T L+ + Q Y+ +G L+ +L + K + I +L +
Sbjct: 1831 ERVGKRTGWLVEIVNYNVENQQYV-AAG--DLRALDTVTNVLNFI--KLQKIDIIELQKS 1885
Query: 102 MH 103
+
Sbjct: 1886 LS 1887
Score = 29.2 bits (65), Expect = 3.0
Identities = 18/132 (13%), Positives = 33/132 (25%), Gaps = 41/132 (31%)
Query: 33 HSKSQPNTVAEFLKSLIGL---SSY-TPHLLMFQTYIETSGF-LSQSDLEK--YCTLLTT 85
S+ + FL + S P + + + + D++ Y T
Sbjct: 409 FSERKLKFSNRFLP--VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT--FD 464
Query: 86 LQDKFEVIPKPKLDSAMHNGGSRLVQCNVQCMQMLCTLHC----TSLDPPLHV------- 134
D L + R+V + L T+ H+
Sbjct: 465 GSD---------LRVLSGSISERIV-------DCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 135 ---KSNLTNANV 143
LT+ N
Sbjct: 509 ASGLGVLTHRNK 520
>3a2q_A 6-aminohexanoate-cyclic-dimer hydrolase; alpha/beta fold, nylon
degradation; 1.80A {Arthrobacter SP} PDB: 3a2p_A
Length = 493
Score = 47.6 bits (114), Expect = 4e-06
Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 16/71 (22%)
Query: 190 VLIYPTFPAQAQRHGEILLTTSG----------------VYYAMLANVIGFPSTNVPLGL 233
+LI PT Q GE++L + + + NV G P+ ++P+G+
Sbjct: 383 LLILPTVTRQTPEIGELMLAKGTDLEGRQSAFISGSLQMLAFTVPFNVSGQPAISLPIGM 442
Query: 234 GSNGLPVGLQV 244
S+G+P+G+Q+
Sbjct: 443 SSDGMPIGVQI 453
>1m22_A Peptide amidase, PAM; eleven-stranded beta sheet, covered double
layers of alpha helices on TOP and bottom, hydrolase;
HET: EPE; 1.40A {Stenotrophomonas maltophilia} SCOP:
c.117.1.1 PDB: 1m21_A*
Length = 503
Score = 47.6 bits (114), Expect = 4e-06
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 3/54 (5%)
Query: 190 VLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQ 243
L+ PT E Y A V G+PS VP+G +GLPVGL
Sbjct: 412 ALVAPTTGVAWPIRSEGDDFPGESY--SAAAVAGYPSLTVPMGQ-IDGLPVGLL 462
>3ppm_A Fatty-acid amide hydrolase 1; protein-inhibitor complex, FAAH,
oxazole, oxadiazole, endoca degradation, membrane
protein; HET: JG1 1DO; 1.78A {Rattus norvegicus} PDB:
2wj2_A* 3k7f_A* 3k83_A* 3k84_A* 3lj6_A* 3lj7_A 3oj8_A*
2wj1_A* 3pr0_A* 2wap_A* 1mt5_A* 2vya_A* 3qk5_A* 3qj8_A*
3qj9_A* 3qkv_A*
Length = 573
Score = 46.7 bits (111), Expect = 8e-06
Identities = 29/161 (18%), Positives = 43/161 (26%), Gaps = 51/161 (31%)
Query: 190 VLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQVCETAS 249
VL+ P A T V Y ML N + FP+ V PV
Sbjct: 463 VLLTPMLGP-ALDLNTPGRATGAVSYTMLYNCLDFPAGVV---------PVTT------- 505
Query: 250 VAQCVTSFVANEHSPLIPSTPQYLDNIDSPRRSMAVDYVWTQVKGFIDIKLMFVVKITSH 309
VT+ + D + G
Sbjct: 506 ----VTAEDDAQMELYKGYFGDIWDI--------ILKKAMKNSVG--------------- 538
Query: 310 LGDYWSP-ALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPN 349
P A+ +A P Q+ LCL +++E + P+
Sbjct: 539 -----LPVAVQ-CVALPWQEELCLRFMREVEQLMTPQKQPS 573
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.8 bits (105), Expect = 3e-05
Identities = 57/439 (12%), Positives = 122/439 (27%), Gaps = 155/439 (35%)
Query: 5 VLSPEAC-----------------MGKVFSIDD----MNSLYSIIEP-----LSHSKSQP 38
++ + C + S + + L I+P HS +
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
Query: 39 ---NTVAEFLKSLIGLSSYTPHLLMFQTYIETSGFLSQSDLEKYC-TLLTT----LQDKF 90
+++ L+ L+ Y LL+ ++ + + +L C LLTT + D
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLN-VQNAKAWNAFNLS--CKILLTTRFKQVTDFL 281
Query: 91 EVIPKPKLDSAMHNGG----------SRLVQCNVQCM--QMLCTLHCTSLDPPLHVKSNL 138
+ H+ + + C Q + ++ T + P + ++
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-LTTN------PRRL--SI 332
Query: 139 TNANVFHVSENFCTDTQLVMAYSRTWDHL-LEKLMMDLRVFFGLKEILGTDGVLIYPTFP 197
+ + + T W H+ +KL + +L P
Sbjct: 333 IAES---IRDGLAT--------WDNWKHVNCDKLTTIIESSL---NVLE----------P 368
Query: 198 AQAQRHGEILLTTSGVYYAMLANVIGFP-STNVPLGLGSNGLPV----GLQVCETASVAQ 252
A+ ++ + L+ + FP S ++P L L + ++ V +
Sbjct: 369 AEYRK-----------MFDRLS--V-FPPSAHIPTIL----LSLIWFDVIKSDVMVVVNK 410
Query: 253 CVTSFVANEHSPL----IPSTPQYLDN--------------IDSPRRSMAVDYVWTQVKG 294
+ + IPS YL+ +D D +
Sbjct: 411 LHKYSLVEKQPKESTISIPS--IYLELKVKLENEYALHRSIVDHYNIPKTFDS-DDLIPP 467
Query: 295 FIDIKLMFVVKITSHLGDYWSPALHKVMAGPNQDRLCLA----------VAKKLEDIFYG 344
++D + SH+G + H + + +K+
Sbjct: 468 YLD---QY---FYSHIG-H-----H--LKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA 513
Query: 345 WTMPNST----GMLVEYRD 359
W S L Y+
Sbjct: 514 WNASGSILNTLQQLKFYKP 532
>2dc0_A Probable amidase; structural genomics, NPPSFA, national project on
protein structural and functional analyses; 2.00A
{Thermus thermophilus}
Length = 434
Score = 44.1 bits (105), Expect = 4e-05
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 10/64 (15%)
Query: 190 VLIYPTFPAQAQRHGEILLTTSGVYYAML---------ANVIGFPSTNVPLGLGSNGLPV 240
L+ P P A G + +++G P+ +P G+PV
Sbjct: 350 ALLLPVQPLPAPPLGTEEVELESGRKGHREAFITLTLPFSLLGVPTLALPFAK-VEGMPV 408
Query: 241 GLQV 244
GLQV
Sbjct: 409 GLQV 412
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 42.9 bits (102), Expect = 1e-04
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 190 VLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQV 244
VL+ + P A L +T Y L ++G P NVP+ GLP+G+QV
Sbjct: 338 VLLTYSAPGTAPAKA--LASTGDPRYNRLWTLMGNPCVNVPVL-KVGGLPIGVQV 389
>3a1k_A Amidase; AS family enzyme, hydrolase; 2.17A {Rhodococcus SP} PDB:
3a1i_A
Length = 521
Score = 42.6 bits (101), Expect = 1e-04
Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 190 VLIYPTFPAQAQRHGEILLTTSGVYYAML--------ANVIGFPSTNVPLGLGSNGLPVG 241
VL+ PT P A + + L +V G PS +VP GL NGLPVG
Sbjct: 419 VLVMPTLPYVASELPAKDVDRATFITKALGMIANTAPFDVTGHPSLSVPAGL-VNGLPVG 477
Query: 242 LQV 244
+ +
Sbjct: 478 MMI 480
>2gi3_A Glutamyl-tRNA(Gln) amidotransferase subunit A; TM1272, structural
genomics, joint center for structura genomics, JCSG;
HET: MSE MPD; 1.80A {Thermotoga maritima} SCOP:
c.117.1.1 PDB: 3al0_A*
Length = 476
Score = 38.7 bits (91), Expect = 0.002
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 18/65 (27%)
Query: 190 VLIYPTFPAQAQRHGEI----------LLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLP 239
++ PT P A + GEI + T AN+ G P+ +VP G SN LP
Sbjct: 384 AILTPTSPVTAFKIGEIKDPLTYYLMDIFTIP-------ANLAGLPAISVPFGF-SNNLP 435
Query: 240 VGLQV 244
VG+QV
Sbjct: 436 VGVQV 440
>3kfu_E Glutamyl-tRNA(Gln) amidotransferase subunit A; ASPRS, gatcab,
ATP-binding, aminoacyl-tRNA synthetase, ligas
nucleotide-binding, protein biosynthesis, ligase-RNA
comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}
Length = 471
Score = 37.5 bits (88), Expect = 0.005
Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 18/65 (27%)
Query: 190 VLIYPTFPAQAQRHGEI----------LLTTSGVYYAMLANVIGFPSTNVPLGLGSNGLP 239
+L+ PT P A G L T AN+ G P+ + P G LP
Sbjct: 381 LLLLPTTPHPAFPFGARRDPLAMYREDLYTVG-------ANLTGLPALSFPAGF-EGHLP 432
Query: 240 VGLQV 244
VGLQ+
Sbjct: 433 VGLQL 437
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical
protein, riken structural genomics/proteomics
initiative, RSGI, signaling protein; NMR {Mus musculus}
SCOP: a.60.1.2
Length = 78
Score = 33.6 bits (77), Expect = 0.012
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 32 SHSKSQPNTVAEFLKSLIGLSSYTPHLLM--FQTYIETSGFLSQSDLEK 78
S + T+ EFL+ I L YT LL+ ++T ++ + +S L +
Sbjct: 6 SGRRENHQTIQEFLER-IHLQEYTSTLLLNGYET-LDDLKDIKESHLIE 52
>3h0l_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, protein biosynthesis; HET: ADP; 2.30A
{Aquifex aeolicus} PDB: 3h0m_A 3h0r_A*
Length = 478
Score = 36.0 bits (84), Expect = 0.018
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 19/66 (28%)
Query: 190 VLIYPTFPAQAQRHGEI-----------LLTTSGVYYAMLANVIGFPSTNVPLGLGSNGL 238
V+ PT P + GE +LT AN+ G P+ ++P+ +GL
Sbjct: 391 VIASPTTPTLPFKFGERLENPIEMYLSDILTVP-------ANLAGLPAISIPIAW-KDGL 442
Query: 239 PVGLQV 244
PVG Q+
Sbjct: 443 PVGGQL 448
>3ip4_A Glutamyl-tRNA(Gln) amidotransferase subunit A; multi protein
complex, ligase, ATP-binding, nucleotide-bindi protein
biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB:
2df4_A 2dqn_A* 2g5h_A 2g5i_A* 2f2a_A
Length = 485
Score = 36.0 bits (84), Expect = 0.019
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 19/66 (28%)
Query: 190 VLIYPTFPAQAQRHGEI-----------LLTTSGVYYAMLANVIGFPSTNVPLGLGSNGL 238
V++ PT P A GE LLTT N+ G P +VP G SNG
Sbjct: 398 VVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTP-------VNLAGLPGISVPCGQ-SNGR 449
Query: 239 PVGLQV 244
P+GLQ
Sbjct: 450 PIGLQF 455
>2ke7_A Ankyrin repeat and sterIle alpha motif domain- containing protein
1B; SAM domain, alternative splicing, ANK repeat, cell
junction, cell membrane; NMR {Homo sapiens}
Length = 103
Score = 31.8 bits (72), Expect = 0.080
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 20 DMNSLYS-IIEPLSHSKSQPNTVAEFLKSLIGLSSYTPHLLMFQTYIETSGFLSQSDLE 77
D+ SLY ++ + TV ++L+S IGL Y HL+ + F+ + +E
Sbjct: 3 DITSLYKKAGSEMNGPRCPVQTVGQWLES-IGLPQYENHLMANG--FDNVQFMGSNVME 58
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental
regulation, tyrosine kinase, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
SCOP: a.60.1.2
Length = 81
Score = 30.1 bits (68), Expect = 0.21
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 33 HSKSQPNTVAEFLKSLIGLSSYTPHLLMFQ-TYIETSGFLSQSDLEK 78
S S TV ++L S I + Y H + + ++ D+
Sbjct: 2 SSGSSGLTVGDWLDS-IRMGRYRDHFAAGGYSSLGMVLRMNAQDVRA 47
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer;
1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Length = 82
Score = 29.0 bits (65), Expect = 0.53
Identities = 9/44 (20%), Positives = 18/44 (40%), Gaps = 2/44 (4%)
Query: 36 SQPNTVAEFLKSLIGLSSYTPHLLMFQ-TYIETSGFLSQSDLEK 78
+ NTV E+L++ I + Y T + + D+ +
Sbjct: 9 TSFNTVDEWLEA-IKMGQYKESFANAGFTSFDVVSQMMMEDILR 51
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction
module, dimerization domain, transferase; 2.00A {Mus
musculus} SCOP: a.60.1.2
Length = 94
Score = 28.7 bits (64), Expect = 0.83
Identities = 13/54 (24%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 26 SIIEPLSHSKSQPNTVAEFLKSLIGLSSYTPHLLMFQ-TYIETSGFLSQSDLEK 78
++++P S S +V ++L++ I + Y + T +E +SQ DL +
Sbjct: 14 ALLDPSSPEFSAVVSVGDWLQA-IKMDRYKDNFTAAGYTTLEAVVHMSQDDLAR 66
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase,
membrane, nucleotide- binding, phosphorylation, repeat,
signal, transferase; 2.10A {Homo sapiens}
Length = 83
Score = 28.2 bits (63), Expect = 1.2
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 2/53 (3%)
Query: 27 IIEPLSHSKSQPNTVAEFLKSLIGLSSYTPHLLMFQ-TYIETSGFLSQSDLEK 78
+++ S +V E+L++ I + Y E +S DL +
Sbjct: 4 LLDQRQPHYSAFGSVGEWLRA-IKMGRYEESFAAAGFGSFELVSQISAEDLLR 55
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 80
Score = 27.5 bits (61), Expect = 1.7
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 32 SHSKSQPNTVAEFLKSLIGLSSYTPHLLMFQTYIETSGFLSQSDLE 77
S + TV ++L+S IGL Y HL+ + F+ + +E
Sbjct: 6 SGPRCPVQTVGQWLES-IGLPQYENHLMANG--FDNVQFMGSNVME 48
>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM
barrel, riken S genomics/proteomics initiative, RSGI,
structural genomics,; 2.00A {Aeropyrum pernix} SCOP:
c.1.10.1
Length = 234
Score = 28.7 bits (65), Expect = 2.8
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 185 LGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPS 226
G ++ P + + L GV L +VIGFP
Sbjct: 48 YGFRCAVLTPVYTVKISG----LAEKLGV---KLCSVIGFPL 82
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein
regulation, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 99
Score = 27.1 bits (60), Expect = 3.3
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 27 IIEPLSHSKSQPNTVAEFLKSLIGLSSYTPHLLMFQ-TYIETSGFLSQSDLEK 78
+++ + TV ++L + I + Y L T ++ ++ DL +
Sbjct: 11 LLDRSIPDFTAFTTVDDWLSA-IKMVQYRDSFLTAGFTSLQLVTQMTSEDLLR 62
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel,
lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB:
1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A
3nq8_A 3q2d_A* 3nr0_A 3nqv_A
Length = 260
Score = 28.0 bits (63), Expect = 4.0
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 186 GTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPS 226
T + IYP F A++ L G +A V FP
Sbjct: 43 NTAAICIYPRFIPIARK----TLKEQGTPEIRIATVTNFPH 79
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics,
structural genomics center for infectious disease,
ssgcid; 1.70A {Entamoeba histolytica}
Length = 239
Score = 28.0 bits (63), Expect = 4.8
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 185 LGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPS 226
V + PT+ LL +GV + VIGFP
Sbjct: 55 YKFASVCVNPTWVPLCAE----LLKGTGV---KVCTVIGFPL 89
>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate,
carbinolamine, structural genomics, riken structural
genomics/proteomics initiative; HET: HPD; 1.40A {Thermus
thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*
Length = 220
Score = 27.5 bits (62), Expect = 5.4
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 185 LGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPS 226
G G+ I P++ A + + L V+GFP
Sbjct: 31 YGFYGLCIPPSYVAWVRA----RYPHAPF---RLVTVVGFPL 65
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE CIT; 1.75A {Thermotoga maritima} PDB: 1o0y_A*
3r13_A*
Length = 260
Score = 27.6 bits (62), Expect = 6.3
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 185 LGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLANVIGFPS 226
GV + P + A+ L + V + V+GFP
Sbjct: 71 NRFHGVCVNPCYVKLARE----ELEGTDV---KVVTVVGFPL 105
>1gpp_A Endonuclease PI-SCEI; homing, protein splicing; 1.35A
{Saccharomyces cerevisiae} SCOP: b.86.1.2
Length = 237
Score = 27.1 bits (59), Expect = 8.0
Identities = 8/53 (15%), Positives = 19/53 (35%), Gaps = 4/53 (7%)
Query: 299 KLMFVVKITSHLGDYWSPALHKVMAGPNQDRLCLAVAKKLEDIFYGWTMPNST 351
L V+ ++ ++P + + ED +YG T+ + +
Sbjct: 176 LLGSHVRKATYQ--TYAPIGAAFARECRG--FYFELQELKEDDYYGITLSDDS 224
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.267 0.0749 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,315,159
Number of extensions: 303615
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 540
Number of HSP's successfully gapped: 30
Length of query: 359
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 264
Effective length of database: 4,049,298
Effective search space: 1069014672
Effective search space used: 1069014672
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)