RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy179
(359 letters)
>d2gi3a1 c.117.1.1 (A:1-475) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Thermotoga maritima [TaxId: 2336]}
Length = 475
Score = 54.5 bits (130), Expect = 9e-09
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 4/93 (4%)
Query: 155 QLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEI---LLTTS 211
++ + + + + + ++ L E+L ++ PT P A + GEI L
Sbjct: 348 TFTLSAAYYEAYFNKAMKVRRKISDELNEVLSQYDAILTPTSPVTAFKIGEIKDPLTYYL 407
Query: 212 GVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQV 244
+ + AN+ G P+ +VP G SN LPVG+QV
Sbjct: 408 MDIFTIPANLAGLPAISVPFGF-SNNLPVGVQV 439
>d2f2aa1 c.117.1.1 (A:1-485) Glutamyl-tRNA(Gln) amidotransferase
subunit A {Staphylococcus aureus [TaxId: 1280]}
Length = 485
Score = 52.5 bits (125), Expect = 3e-08
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)
Query: 183 EILGTDGVLIYPTFPAQAQRHGEILLTTSGVY----YAMLANVIGFPSTNVPLGLGSNGL 238
++ V++ PT P A GE + +Y N+ G P +VP G SNG
Sbjct: 391 KVFENYDVVVGPTAPTTAFNLGEEIDDPLTMYANDLLTTPVNLAGLPGISVPCGQ-SNGR 449
Query: 239 PVGLQV 244
P+GLQ
Sbjct: 450 PIGLQF 455
>d1ocka_ c.117.1.1 (A:) Malonamidase E2 {Bradyrhizobium japonicum
[TaxId: 375]}
Length = 412
Score = 51.7 bits (122), Expect = 6e-08
Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 160 YSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLA 219
T E + R L E+ VL+ + P A L +T Y L
Sbjct: 308 VGLTPKEYDEARRIGRRGRRELGEVFEGVDVLLTYSAPGTAPAKA--LASTGDPRYNRLW 365
Query: 220 NVIGFPSTNVPLGLGSNGLPVGLQV 244
++G P NVP+ GLP+G+QV
Sbjct: 366 TLMGNPCVNVPVL-KVGGLPIGVQV 389
Score = 27.0 bits (58), Expect = 4.4
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 321 VMAGPNQDRLCLAVAKKLEDIF 342
V+A D LA A LED
Sbjct: 389 VIARFGNDAHALATAWFLEDAL 410
>d1m22a_ c.117.1.1 (A:) Peptide amidase Pam {Stenotrophomonas
maltophilia [TaxId: 40324]}
Length = 490
Score = 47.0 bits (110), Expect = 2e-06
Identities = 21/97 (21%), Positives = 29/97 (29%), Gaps = 5/97 (5%)
Query: 150 FCTDTQLVMAYSRTWDHLLEKLMMDLRVFFGLKEILGTDGV--LIYPTFPAQAQRHGEIL 207
+ + L G+ L + L+ PT E
Sbjct: 366 LLVEADATAGLADPAYIRARSDARRLAGPEGIDAALAAHQLDALVAPTTGVAWPIRSEG- 424
Query: 208 LTTSGVYYAMLANVIGFPSTNVPLGLGSNGLPVGLQV 244
A V G+PS VP+G +GLPVGL
Sbjct: 425 -DDFPGESYSAAAVAGYPSLTVPMGQ-IDGLPVGLLF 459
>d1mt5a_ c.117.1.1 (A:) Fatty acid amide hydrolase (oleamide
hydrolase) {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 537
Score = 43.9 bits (102), Expect = 2e-05
Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 31/114 (27%)
Query: 160 YSRTWDHLLEKLMMDLRVFFGLKEILGTDGVLIYPTFPAQAQRHGEILLTTSGVYYAMLA 219
+ L ++ M + + + D VL+ P A T + Y +L
Sbjct: 404 SAEKLWKLQHEIEMYRQSVIAQWKAMNLD-VLLTPMLG-PALDLNTPGRATGAISYTVLY 461
Query: 220 NVIGFPSTNVPLGL-----------------------------GSNGLPVGLQV 244
N + FP+ VP+ S GLPV +Q
Sbjct: 462 NCLDFPAGVVPVTTVTAEDDAQMELYKGYFGDIWDIILKKAMKNSVGLPVAVQC 515
>d1v38a_ a.60.1.2 (A:) Sam-domain protein samsn-1 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 78
Score = 30.7 bits (69), Expect = 0.046
Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
Query: 32 SHSKSQPNTVAEFLKSLIGLSSYTPHLLMFQ-TYIETSGFLSQSDLEKYCT 81
S + T+ EFL+ I L YT LL+ ++ + +S L +
Sbjct: 6 SGRRENHQTIQEFLER-IHLQEYTSTLLLNGYETLDDLKDIKESHLIELNI 55
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 28.0 bits (62), Expect = 0.41
Identities = 10/47 (21%), Positives = 18/47 (38%), Gaps = 2/47 (4%)
Query: 33 HSKSQPNTVAEFLKSLIGLSSYTPHLLMFQ-TYIETSGFLSQSDLEK 78
S S TV ++L S I + Y H + + ++ D+
Sbjct: 2 SSGSSGLTVGDWLDS-IRMGRYRDHFAAGGYSSLGMVLRMNAQDVRA 47
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 225
Score = 27.6 bits (61), Expect = 2.2
Identities = 10/77 (12%), Positives = 25/77 (32%), Gaps = 4/77 (5%)
Query: 6 LSPEACMGKVFSIDDMNSLYSIIEPLSHSKSQPNTVAEFLKSLIGLSSYTPHLLMFQTYI 65
+ P A + KVF D+ + ++ + + + + + +
Sbjct: 111 IYPSAYI-KVF---DLRQCHRQMQQQAATAQAAAAAQAAAVAGNIPGPGSVGGIAPAISL 166
Query: 66 ETSGFLSQSDLEKYCTL 82
+ + DL + C L
Sbjct: 167 SAAAGIGVDDLRRLCIL 183
>d3d1kb1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish
(Trematomus newnesi) [TaxId: 35730]}
Length = 146
Score = 25.8 bits (56), Expect = 5.4
Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 295 FIDIKLMFVVKITSHLGDYWSPALH----KVMAGPNQDRLCLAVAKK 337
F + + + + +G ++ K +A + A+ K+
Sbjct: 103 FKLLSDCITIVLAAKMGHAFTAETQGAFQKFLAA-----VVSALGKQ 144
>d2dn3b1 a.1.1.2 (B:2-146) Hemoglobin, beta-chain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 145
Score = 25.7 bits (56), Expect = 5.5
Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 295 FIDIKLMFVVKITSHLGDYWSPALH----KVMAGPNQDRLCLAVAKK 337
F + + V + H G ++P + KV+AG + A+A K
Sbjct: 102 FRLLGNVLVCVLAHHFGKEFTPPVQAAYQKVVAG-----VANALAHK 143
>d3mdea1 a.29.3.1 (A:242-395) Medium chain acyl-CoA dehydrogenase,
C-domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 154
Score = 25.7 bits (55), Expect = 5.6
Identities = 8/67 (11%), Positives = 19/67 (28%)
Query: 112 CNVQCMQMLCTLHCTSLDPPLHVKSNLTNANVFHVSENFCTDTQLVMAYSRTWDHLLEKL 171
+ S + S ++ Q+ ++ +EKL
Sbjct: 65 ELARLSYQRAAWEIDSGRRNTYYASIAKAYAADIANQLATDAVQVFGGNGFNTEYPVEKL 124
Query: 172 MMDLRVF 178
M D +++
Sbjct: 125 MRDAKIY 131
>d1outb_ a.1.1.2 (B:) Hemoglobin, beta-chain {Trout (Oncorhynchus
mykiss) [TaxId: 8022]}
Length = 146
Score = 25.8 bits (56), Expect = 6.7
Identities = 7/47 (14%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 295 FIDIKLMFVVKITSHLGDYWSPALH----KVMAGPNQDRLCLAVAKK 337
F + + + I + G ++P + K M + A+ +
Sbjct: 103 FRVLADVLTIVIAAKFGASFTPEIQATWQKFMKV-----VVAAMGSR 144
>d1wmub_ a.1.1.2 (B:) Hemoglobin, beta-chain {Aldabra giant tortoise
(Geochelone gigantea) [TaxId: 167804]}
Length = 146
Score = 25.4 bits (55), Expect = 8.8
Identities = 7/47 (14%), Positives = 19/47 (40%), Gaps = 9/47 (19%)
Query: 295 FIDIKLMFVVKITSHLGDYWSPALH----KVMAGPNQDRLCLAVAKK 337
F + + ++ + +H ++PA K++ + A+A
Sbjct: 103 FKLLGNILIIVLATHFPKEFTPASQAAWTKLVNA-----VAHALALG 144
>d2aa1b1 a.1.1.2 (B:1-146) Hemoglobin, beta-chain {Antarctic fish
(Trematomus newnesi) [TaxId: 35730]}
Length = 146
Score = 25.0 bits (54), Expect = 9.2
Identities = 6/47 (12%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 295 FIDIKLMFVVKITSHLGDYWSPALH----KVMAGPNQDRLCLAVAKK 337
F + + + + G ++ + K MA + ++ K+
Sbjct: 103 FKLLADCLTIVVAARFGSAFTGEVQAAFQKFMAV-----VVSSLGKQ 144
>d1cg5b_ a.1.1.2 (B:) Hemoglobin, beta-chain {Cartilaginous fish
akaei (Dasyatis akajei) [TaxId: 31902]}
Length = 141
Score = 25.0 bits (54), Expect = 9.3
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 9/47 (19%)
Query: 295 FIDIKLMFVVKITSHLGDYWSPALH----KVMAGPNQDRLCLAVAKK 337
F + F+V++ H + P H K + A++
Sbjct: 98 FKLLGQTFMVELALHYKKTFRPKEHAAAYKFFRL-----VAEALSSN 139
>d1ltza_ d.178.1.1 (A:) Phenylalanine hydroxylase, PAH
{Chromobacterium violaceum [TaxId: 536]}
Length = 277
Score = 25.6 bits (56), Expect = 9.4
Identities = 7/58 (12%), Positives = 12/58 (20%), Gaps = 7/58 (12%)
Query: 6 LSPEACMGKVFSIDDMNSLYSIIEPLSHSKSQPNTVAEFLKSLI----GLSSYTPHLL 59
M + ID Y +I+ A L + +
Sbjct: 216 FDLMRIMNTRYRIDTFQKTYFVIDSFKQLFDA---TAPDFAPLYLQLADAQPWGAGDI 270
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.413
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,304,354
Number of extensions: 57829
Number of successful extensions: 150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 18
Length of query: 359
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 273
Effective length of database: 1,226,816
Effective search space: 334920768
Effective search space used: 334920768
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)