BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1790
(299 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1T27|A Chain A, The Structure Of Pitp Complexed To Phosphatidylcholine
Length = 271
Score = 175 bits (444), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 150/275 (54%), Gaps = 29/275 (10%)
Query: 1 MVLLKEYRIPMPLTVEEYRIGQLYMIARHSHEQSEDGEGVETIVNISCEDEEHGRGQYTE 60
MVLLKEYR+ +P++V+EY++GQLY +A S ++ GEGVE +VN E ++ +GQYT
Sbjct: 1 MVLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDDGEKGQYTH 60
Query: 61 KRIHLSNRLPYWIQAIGRGQYTEKRIHLSNRLPYWIQAIIPKVFYITEKAWNYYPYTMTE 120
K HL +++P +++ + I EKAWN YPY T
Sbjct: 61 KIYHLQSKVPTFVRMLAP----------------------EGALNIHEKAWNAYPYCRTV 98
Query: 121 YTCSFIPK-LNIMIRTKFEDNNGSNDNCLGLTEEELLARQVEYLDIA-YDEINPKHYKEE 178
T ++ + I I T + + G+ +N L E + Y+DIA ++ K YK E
Sbjct: 99 ITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAIYIDIADRSQVLSKDYKAE 158
Query: 179 EDPKFFQSKKTGRGPLKEGWRDTFE-----PIMCSYKVVEGAFEVWGLQTKAEDFIQKAI 233
EDP F+S KTGRGPL W+ P MC+YK+V F+ WGLQ K E+FI K
Sbjct: 159 EDPAKFKSIKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQE 218
Query: 234 RDILLVGHRQAFAWLDEWLDMSLTDVRVYEGEMQR 268
+ + HRQ F WLD+W+D+++ D+R E E +R
Sbjct: 219 KRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKR 253
>pdb|1KCM|A Chain A, Crystal Structure Of Mouse Pitp Alpha Void Of Bound
Phospholipid At 2.0 Angstroms Resolution
Length = 270
Score = 173 bits (439), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 102/274 (37%), Positives = 149/274 (54%), Gaps = 29/274 (10%)
Query: 2 VLLKEYRIPMPLTVEEYRIGQLYMIARHSHEQSEDGEGVETIVNISCEDEEHGRGQYTEK 61
VLLKEYR+ +P++V+EY++GQLY +A S ++ GEGVE +VN E ++ +GQYT K
Sbjct: 1 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDDGEKGQYTHK 60
Query: 62 RIHLSNRLPYWIQAIGRGQYTEKRIHLSNRLPYWIQAIIPKVFYITEKAWNYYPYTMTEY 121
HL +++P +++ + I EKAWN YPY T
Sbjct: 61 IYHLQSKVPTFVRMLAP----------------------EGALNIHEKAWNAYPYCRTVI 98
Query: 122 TCSFIPK-LNIMIRTKFEDNNGSNDNCLGLTEEELLARQVEYLDIA-YDEINPKHYKEEE 179
T ++ + I I T + + G+ +N L E + Y+DIA ++ K YK EE
Sbjct: 99 TNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAIYIDIADRSQVLSKDYKAEE 158
Query: 180 DPKFFQSKKTGRGPLKEGWRDTFE-----PIMCSYKVVEGAFEVWGLQTKAEDFIQKAIR 234
DP F+S KTGRGPL W+ P MC+YK+V F+ WGLQ K E+FI K +
Sbjct: 159 DPAKFKSVKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQEK 218
Query: 235 DILLVGHRQAFAWLDEWLDMSLTDVRVYEGEMQR 268
+ HRQ F WLD+W+D+++ D+R E E +R
Sbjct: 219 RLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKR 252
>pdb|2A1L|A Chain A, Rat Pitp-Beta Complexed To Phosphatidylcholine
Length = 270
Score = 171 bits (434), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 100/277 (36%), Positives = 152/277 (54%), Gaps = 36/277 (12%)
Query: 2 VLLKEYRIPMPLTVEEYRIGQLYMIARHSHEQSEDGEGVETIVNISCEDEEHGRGQYTEK 61
VL+KE+R+ +P +V+EY++GQLY +A S ++ GEG+E + N E++
Sbjct: 1 VLIKEFRVVLPCSVQEYQVGQLYSVAEASKNETGGGEGIEVLKNEPYENDGE-------- 52
Query: 62 RIHLSNRLPYWIQAIGRGQYTEKRIHLSNRLPYWIQAIIPK---VFYITEKAWNYYPYTM 118
+GQYT K HL +++P +++ I P+ VF+ EKAWN YPY
Sbjct: 53 ----------------KGQYTHKIYHLKSKVPAFVRMIAPEGSLVFH--EKAWNAYPYCR 94
Query: 119 TEYTCSFIPK-LNIMIRTKFEDNNGSNDNCLGLTEEELLARQVEYLDIA-YDEINPKHYK 176
T T ++ I I T + + G+ +N GL ++ ++DIA ++ P YK
Sbjct: 95 TIVTNEYMKDDFFIKIETWHKPDLGTLENVHGLDPNTWKTVEIVHIDIADRSQVEPADYK 154
Query: 177 EEEDPKFFQSKKTGRGPLKEGWRDTFE-----PIMCSYKVVEGAFEVWGLQTKAEDFIQK 231
+EDP FQS KT RGPL W+ P MC+YK+V F+ WGLQ+K E+FIQK
Sbjct: 155 ADEDPALFQSVKTKRGPLGPNWKKELANTPDCPKMCAYKLVTIKFKWWGLQSKVENFIQK 214
Query: 232 AIRDILLVGHRQAFAWLDEWLDMSLTDVRVYEGEMQR 268
+ I HRQ F W+D+W+D+++ D+R E E Q+
Sbjct: 215 QEKRIFTNLHRQLFCWIDKWIDLTMEDIRRMEDETQK 251
>pdb|1UW5|A Chain A, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
pdb|1UW5|B Chain B, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
pdb|1UW5|C Chain C, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
pdb|1UW5|D Chain D, Structure Of Pitp-Alpha Complexed To Phosphatidylinositol
Length = 270
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 147/275 (53%), Gaps = 32/275 (11%)
Query: 2 VLLKEYRIPMPLTVEEYRIGQLYMIARHSHEQSEDGEGVETIVNISCEDEEHGRGQYTEK 61
VLLKEYR+ +P++V+EY++GQLY +A S ++ GEGVE +VN E +
Sbjct: 2 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDGE-------- 53
Query: 62 RIHLSNRLPYWIQAIGRGQYTEKRIHLSNRLPYWIQAIIPK-VFYITEKAWNYYPYTMTE 120
+GQYT K HL +++P +++ + P+ I EKAWN YPY T
Sbjct: 54 ----------------KGQYTHKIYHLQSKVPTFVRXLAPEGALNIHEKAWNAYPYCRTV 97
Query: 121 YTCSFIPK-LNIMIRTKFEDNNGSNDNCLGLTEEELLARQVEYLDIA-YDEINPKHYKEE 178
T + + I I T + + G+ +N L E + Y+DIA ++ K YK E
Sbjct: 98 ITNEYXKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAVYIDIADRSQVLSKDYKAE 157
Query: 179 EDPKFFQSKKTGRGPLKEGWRDTFE-----PIMCSYKVVEGAFEVWGLQTKAEDFIQKAI 233
EDP F+S KTGRGPL W+ P C+YK+V F+ WGLQ K E+FI K
Sbjct: 158 EDPAKFKSIKTGRGPLGPNWKQELVNQKDCPYXCAYKLVTVKFKWWGLQNKVENFIHKQE 217
Query: 234 RDILLVGHRQAFAWLDEWLDMSLTDVRVYEGEMQR 268
R + HRQ F WLD+W+D++ D+R E E +R
Sbjct: 218 RRLFTNFHRQLFCWLDKWVDLTXDDIRRXEEETKR 252
>pdb|1EGE|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGE|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1T9G|A Chain A, Structure Of The Human Mcad:etf Complex
pdb|1T9G|B Chain B, Structure Of The Human Mcad:etf Complex
pdb|1T9G|C Chain C, Structure Of The Human Mcad:etf Complex
pdb|1T9G|D Chain D, Structure Of The Human Mcad:etf Complex
Length = 396
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 199 RDTFEPIMCSYKVVE--GAFEVWGLQTKAE 226
R T EP+MC+Y V E +V G++TKAE
Sbjct: 123 RMTEEPLMCAYCVTEPGAGSDVAGIKTKAE 152
>pdb|1EGD|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGD|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase
pdb|1EGC|A Chain A, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|B Chain B, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|C Chain C, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
pdb|1EGC|D Chain D, Structure Of T255e, E376g Mutant Of Human Medium Chain
Acyl- Coa Dehydrogenase Complexed With Octanoyl-Coa
Length = 396
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 199 RDTFEPIMCSYKVVE--GAFEVWGLQTKAE 226
R T EP+MC+Y V E +V G++TKAE
Sbjct: 123 RMTEEPLMCAYCVTEPGAGSDVAGIKTKAE 152
>pdb|1UDY|A Chain A, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|B Chain B, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|C Chain C, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
pdb|1UDY|D Chain D, Medium-Chain Acyl-Coa Dehydrogenase With
3-Thiaoctanoyl-Coa
Length = 396
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 199 RDTFEPIMCSYKVVE--GAFEVWGLQTKAE 226
R T EP+MC+Y V E +V G++TKAE
Sbjct: 123 RMTEEPLMCAYCVTEPGAGSDVAGIKTKAE 152
>pdb|3MDD|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDD|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|A Chain A, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
pdb|3MDE|B Chain B, Crystal Structures Of Medium Chain Acyl-Coa Dehydrogenase
From Pig Liver Mitochondria With And Without Substrate
Length = 385
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 199 RDTFEPIMCSYKVVE--GAFEVWGLQTKAE 226
R T EP+MC+Y V E +V G++TKAE
Sbjct: 113 RMTEEPLMCAYCVTEPGAGSDVAGIKTKAE 142
>pdb|2A1T|A Chain A, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|B Chain B, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|C Chain C, Structure Of The Human Mcad:etf E165betaa Complex
pdb|2A1T|D Chain D, Structure Of The Human Mcad:etf E165betaa Complex
Length = 421
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 199 RDTFEPIMCSYKVVE--GAFEVWGLQTKAE 226
R T EP+MC+Y V E +V G++TKAE
Sbjct: 148 RMTEEPLMCAYCVTEPGAGSDVAGIKTKAE 177
>pdb|2WHL|A Chain A, Understanding How Diverse Mannanases Recognise
Heterogeneous Substrates
Length = 294
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 6/111 (5%)
Query: 92 LPYWIQAIIPKVFYITEKAWNYYPYTMTEYTCSFI---PKLNIMIRTKFEDNNGSNDNCL 148
+P A + + W YP ++ +Y P N M + G + N +
Sbjct: 142 IPKLRDAGLTHTLMVDAAGWGQYPQSIHDYGQDVFNADPLKNTMFSIHMYEYAGGDANTV 201
Query: 149 GLTEEELLARQVEYLDIAYDEINPKHYKEEEDPKFFQSKKTGRGPLKEGWR 199
+ ++ + L + E +H +ED S++TG G L W+
Sbjct: 202 RSNIDRVIDQD---LALVIGEFGHRHTDVDEDTILSYSEETGTGWLAWSWK 249
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,277,160
Number of Sequences: 62578
Number of extensions: 392902
Number of successful extensions: 692
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 18
length of query: 299
length of database: 14,973,337
effective HSP length: 98
effective length of query: 201
effective length of database: 8,840,693
effective search space: 1776979293
effective search space used: 1776979293
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)