Query psy1790
Match_columns 299
No_of_seqs 118 out of 269
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 16:59:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1790.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1790hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08890 SRPBCC_PITPNC1_like Li 100.0 9E-121 2E-125 838.4 26.2 250 3-275 1-250 (250)
2 cd08889 SRPBCC_PITPNM1-2_like 100.0 1E-120 2E-125 841.6 26.4 250 2-274 1-259 (260)
3 cd07815 SRPBCC_PITP Lipid-bind 100.0 1E-119 2E-124 832.6 26.3 250 3-275 1-251 (251)
4 cd08888 SRPBCC_PITPNA-B_like L 100.0 3E-119 6E-124 831.5 26.0 247 3-272 1-255 (258)
5 PF02121 IP_trans: Phosphatidy 100.0 4E-118 8E-123 824.6 25.0 246 2-270 1-254 (254)
6 KOG3668|consensus 100.0 6E-116 1E-120 803.6 27.1 256 1-279 1-262 (269)
7 PF04707 PRELI: PRELI-like fam 95.4 0.37 8E-06 41.9 12.1 35 88-122 43-80 (157)
8 cd08890 SRPBCC_PITPNC1_like Li 95.2 0.01 2.2E-07 56.2 1.9 39 50-102 31-69 (250)
9 cd07815 SRPBCC_PITP Lipid-bind 94.8 0.016 3.5E-07 54.8 2.0 37 52-102 33-69 (251)
10 cd08889 SRPBCC_PITPNM1-2_like 94.7 0.017 3.7E-07 55.0 1.9 36 53-102 36-71 (260)
11 PF02121 IP_trans: Phosphatidy 94.7 0.012 2.6E-07 55.7 0.9 26 54-85 37-62 (254)
12 cd08888 SRPBCC_PITPNA-B_like L 94.3 0.025 5.4E-07 53.8 2.0 37 52-102 33-69 (258)
13 KOG3668|consensus 92.9 0.064 1.4E-06 51.1 2.3 36 53-102 36-71 (269)
14 PF10698 DUF2505: Protein of u 61.4 16 0.00034 31.5 4.8 37 212-248 123-159 (159)
15 PF11191 DUF2782: Protein of u 36.2 3.7 8.1E-05 33.5 -3.0 13 14-26 50-63 (105)
16 PF12162 STAT1_TAZ2bind: STAT1 35.4 18 0.00039 23.0 0.7 11 10-20 7-17 (23)
17 COG3369 Zinc finger domain con 30.2 33 0.00071 27.6 1.6 29 54-82 27-55 (78)
18 PF10544 T5orf172: T5orf172 do 28.7 1E+02 0.0022 23.4 4.1 37 221-262 56-95 (100)
19 PTZ00285 glucosamine-6-phospha 20.8 58 0.0013 30.1 1.6 38 238-275 61-98 (253)
20 PF01452 Rota_NSP4: Rotavirus 20.4 90 0.002 28.4 2.6 38 207-244 63-110 (173)
No 1
>cd08890 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs). This subgroup includes the N-terminal SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of mammalian Class IIB phosphatidylinositol transfer protein (PITP), PITPNC1/RdgBbeta, and related proteins. These are metazoan proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Mammalian PITPNC1 contains an amino-terminal SRPBCC PITP-like domain and a short carboxyl-terminal domain. It is a cytoplasmic protein, and is ubiquitously
Probab=100.00 E-value=8.8e-121 Score=838.37 Aligned_cols=250 Identities=69% Similarity=1.213 Sum_probs=247.0
Q ss_pred eeEEeeeccccChhHhhhhHHHHhhhhcccccCCCceEEEEEeeeccCCCCCcceeeeEEEEEeccCcchhhhccCCccc
Q psy1790 3 LLKEYRIPMPLTVEEYRIGQLYMIARHSHEQSEDGEGVETIVNISCEDEEHGRGQYTEKRIHLSNRLPYWIQAIGRGQYT 82 (299)
Q Consensus 3 likEyRI~lPltveEY~igQLYmvak~S~eet~~GeGVEvl~Nep~e~~~~g~GqYT~K~~hl~~~~~~~~~~~~~~~~t 82 (299)
||||||||||||||||||||||||||+|+++||+|||||||+||||+++++|+||||||+|||
T Consensus 1 likEyRi~lPltveEY~igQLYmvak~S~eet~~geGVEvl~Nep~~~~~~~~GqYT~K~~hl----------------- 63 (250)
T cd08890 1 LLKEYRICMPLTVEEYRIGQLYMISRHSHEQSERGEGVEVVQNEPCEDPEHGNGQFTEKRVYL----------------- 63 (250)
T ss_pred CcEEEEEeccCcHHHHHHHHHHHHHHhhHhhcCCCccEEEEeccccccCCCCccceeEEEEEc-----------------
Confidence 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCchHHHHHHhccccceeeeeeeccccceeeEEeeccccceEEEEEeeEeCCCCCCCCCCCCCHhhhcceeeEE
Q psy1790 83 EKRIHLSNRLPYWIQAIIPKVFYITEKAWNYYPYTMTEYTCSFIPKLNIMIRTKFEDNNGSNDNCLGLTEEELLARQVEY 162 (299)
Q Consensus 83 ~k~~~l~sklP~wi~~~~Pk~l~v~EkaWNayPy~~T~yt~~~~~kF~i~IeT~~~~d~g~~eN~~~L~~~~L~~ReV~~ 162 (299)
+||||+|||+++|+.|+|+|+||||||||+|+|+|+||++|+|.|||+|.+|+|++|||||||+++|++|+|++
T Consensus 64 ------~sklP~w~r~~~P~~l~v~EkaWNaYPy~~T~y~~~~~~kf~i~IET~h~~d~g~~eN~~~L~~~~L~~ReV~~ 137 (250)
T cd08890 64 ------NSRLPSWARAVVPKIFYVTEKAWNYYPYTITEYTCSFLPKFSIHIETKYEDNKGKSENCIFLSEAELSEREVCH 137 (250)
T ss_pred ------cccChhHHHHhCCcceEEehhhhccCCceeeeeccCCcCcEEEEEEEEEcCCCCCccccccCCHHHhcCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCCCCCCCCcceecccCCCCCCCCccccCCceEEEEEEeEEEeeecchhHHHHHHHHHHHHHHHHHHHH
Q psy1790 163 LDIAYDEINPKHYKEEEDPKFFQSKKTGRGPLKEGWRDTFEPIMCSYKVVEGAFEVWGLQTKAEDFIQKAIRDILLVGHR 242 (299)
Q Consensus 163 iDIa~d~i~~k~Y~~~eDp~~f~S~ktgRGPL~~~W~~~~~piMc~YKlV~v~f~~wGlq~kvE~~I~~~~r~i~l~~HR 242 (299)
||||+|++++++|+++|||++|+|+|||||||.+||++++.|||||||||+|+|+|||||+|||+|||+++|++|+++||
T Consensus 138 IDIa~d~v~~~dYk~eeDp~~f~S~kTgRGPL~~~W~~~~~PiMcaYKLv~v~f~~wG~q~rvE~~I~~~~r~~~l~~HR 217 (250)
T cd08890 138 LDIAYDEIPEKYYKEEEDPKYFKSEKTGRGPLKEGWRETHKPIMCSYKLVTVKFEVWGLQTRVEQFVHKVVRDILLLGHR 217 (250)
T ss_pred EecccCCCCcccCCcccCCccccccccCCCCCCcccccCCCceEEEEEEEEEEEeeecccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhheecccccCCCHHHHHHhHHHHHHHHhhhcC
Q psy1790 243 QAFAWLDEWLDMSLTDVRVYEGEMQRATNVKLT 275 (299)
Q Consensus 243 q~f~w~DeW~~mTm~dIR~~E~e~~~~l~~k~~ 275 (299)
|||||+||||||||+|||++|+++|++|++|++
T Consensus 218 q~fcW~DeW~gltmedIR~~E~e~~~~l~~k~~ 250 (250)
T cd08890 218 QAFAWVDEWYDMTMDDVREYERTIQEKTNEKIG 250 (250)
T ss_pred HHheeHHHHcCCCHHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999998763
No 2
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs). This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en
Probab=100.00 E-value=1.1e-120 Score=841.61 Aligned_cols=250 Identities=46% Similarity=0.884 Sum_probs=246.4
Q ss_pred ceeEEeeeccccChhHhhhhHHHHhhhhccccc-CCCceEEEEEeeeccCCCCCcceeeeEEEEEeccCcchhhhccCCc
Q psy1790 2 VLLKEYRIPMPLTVEEYRIGQLYMIARHSHEQS-EDGEGVETIVNISCEDEEHGRGQYTEKRIHLSNRLPYWIQAIGRGQ 80 (299)
Q Consensus 2 mlikEyRI~lPltveEY~igQLYmvak~S~eet-~~GeGVEvl~Nep~e~~~~g~GqYT~K~~hl~~~~~~~~~~~~~~~ 80 (299)
|||||||||||||||||||||||||||+|+++| |+|||||||+||||+++++|+||||||+|||
T Consensus 1 mlikEyRi~lPltveEY~igQLYmvak~S~eet~g~GeGVEvl~Nepy~~~~~~~GqYT~Kiyhl--------------- 65 (260)
T cd08889 1 MLIKEYRIPLPMSVEEYRIAQLYMIQKKSREESKGEGSGVEILENRPYTDGPGGSGQYTHKIYHI--------------- 65 (260)
T ss_pred CeeEEEEEecCCcHHHHHHHHHHHHHHHhhhccCCCCceEEEEeccccccCCCCcceeEEEEEEc---------------
Confidence 899999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred cceeeccccCchHHHHHHhccc-cceeeeeeeccccceeeEEeeccccceEEEEEeeEeCCCCCCCCCCCCCHhhhccee
Q psy1790 81 YTEKRIHLSNRLPYWIQAIIPK-VFYITEKAWNYYPYTMTEYTCSFIPKLNIMIRTKFEDNNGSNDNCLGLTEEELLARQ 159 (299)
Q Consensus 81 ~t~k~~~l~sklP~wi~~~~Pk-~l~v~EkaWNayPy~~T~yt~~~~~kF~i~IeT~~~~d~g~~eN~~~L~~~~L~~Re 159 (299)
+||||+|||+++|+ +|+|+|+||||||||+|+|+|+||++|+|.|||+|.+|+|++||||||++++|++|+
T Consensus 66 --------~sklP~wl~~~~P~~al~v~EkaWNaYPy~~T~yt~~~~~kF~i~IET~h~~d~g~~eNv~~L~~~~L~~Re 137 (260)
T cd08889 66 --------GSHIPGWFRAILPKSALRVEEEAWNAYPYTRTRYTCPFVEKFSLDIETYYFDDAGEQENVFNLSPAELRQRI 137 (260)
T ss_pred --------cccChHHHHHhCCCcceEEehhHhCCCCceEEEEecCCccceEEEEEEEEcCCCCCccccccCCHHHhhCce
Confidence 99999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeccCCCCCCCCCCCCCCCCcceecccCCCCCCCCcccc------CCceEEEEEEeEEEeeecchhHHHHHHHHHHH
Q psy1790 160 VEYLDIAYDEINPKHYKEEEDPKFFQSKKTGRGPLKEGWRDT------FEPIMCSYKVVEGAFEVWGLQTKAEDFIQKAI 233 (299)
Q Consensus 160 V~~iDIa~d~i~~k~Y~~~eDp~~f~S~ktgRGPL~~~W~~~------~~piMc~YKlV~v~f~~wGlq~kvE~~I~~~~ 233 (299)
|++||||+|++++++|+++|||++|+|+|||||||.+||+++ ..|||||||||+|+|+|||||+|||+|||++.
T Consensus 138 V~~IDIa~d~v~~~dYk~eeDP~~f~S~kTgRGPL~~~W~~~~~~~~~~~PiMcaYKLv~v~f~~wG~q~rvE~fI~~~~ 217 (260)
T cd08889 138 IDFIDIVKDPVPGSDYKAEEDPKLYVSEKTGRGPLSDDWIEEYKDPPGKGPIMCAYKLCKVEFRYWGMQTKIERFIHDVA 217 (260)
T ss_pred EEEEeccCCCCCccccCcccCcchhcccccCCCCCChhhhhhhcccCCCCCeEEEeEEEEEEEeeecchHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999998 57999999999999999999999999999986
Q ss_pred -HHHHHHHHHHhheecccccCCCHHHHHHhHHHHHHHHhhhc
Q psy1790 234 -RDILLVGHRQAFAWLDEWLDMSLTDVRVYEGEMQRATNVKL 274 (299)
Q Consensus 234 -r~i~l~~HRq~f~w~DeW~~mTm~dIR~~E~e~~~~l~~k~ 274 (299)
|++|+++|||||||+||||||||+|||++|+++|++|++|+
T Consensus 218 lr~~~l~~HRq~fcW~DeW~gltmedIR~~E~etq~~L~~k~ 259 (260)
T cd08889 218 LRKVMLRAHRQAWCWQDEWYGLTMEDIRKLEEETQLALAQKM 259 (260)
T ss_pred hHHHHHHHHHHHheeHHHHcCCCHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999998876
No 3
>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the phosphatidylinositol transfer protein (PITP) family of lipid transfer proteins. This family of proteins includes Class 1 PITPs (PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator and related proteins), Class IIA PITPs (PITPNM1/PITPalphaI/Nir2, PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related proteins), and Class IIB PITPs (PITPNC1/RdgBbeta and related proteins). The PITP family belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns
Probab=100.00 E-value=9.7e-120 Score=832.61 Aligned_cols=250 Identities=51% Similarity=0.943 Sum_probs=246.9
Q ss_pred eeEEeeeccccChhHhhhhHHHHhhhhcccccCCCceEEEEEeeeccCCCCCcceeeeEEEEEeccCcchhhhccCCccc
Q psy1790 3 LLKEYRIPMPLTVEEYRIGQLYMIARHSHEQSEDGEGVETIVNISCEDEEHGRGQYTEKRIHLSNRLPYWIQAIGRGQYT 82 (299)
Q Consensus 3 likEyRI~lPltveEY~igQLYmvak~S~eet~~GeGVEvl~Nep~e~~~~g~GqYT~K~~hl~~~~~~~~~~~~~~~~t 82 (299)
|||||||+||||||||||||||||||+|+++|++|||||||+||||+++++|+||||||+|||
T Consensus 1 likEyRi~lPltveEYqigQLY~vak~S~eet~~GeGVEvl~Nepy~~~~~~~GqYT~Kiyhl----------------- 63 (251)
T cd07815 1 LIKEFRIVLPLTVEEYQIGQLYMVAKASKEETGSGEGVEVLKNEPYEDENGGKGQYTHKIYHL----------------- 63 (251)
T ss_pred CcEEEEEecCCcHHHHHHHHHHHHHHhhHhhcCCCccEEEEeccCcccCCCCcceeEEEEEEc-----------------
Confidence 689999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCchHHHHHHhccc-cceeeeeeeccccceeeEEeeccccceEEEEEeeEeCCCCCCCCCCCCCHhhhcceeeE
Q psy1790 83 EKRIHLSNRLPYWIQAIIPK-VFYITEKAWNYYPYTMTEYTCSFIPKLNIMIRTKFEDNNGSNDNCLGLTEEELLARQVE 161 (299)
Q Consensus 83 ~k~~~l~sklP~wi~~~~Pk-~l~v~EkaWNayPy~~T~yt~~~~~kF~i~IeT~~~~d~g~~eN~~~L~~~~L~~ReV~ 161 (299)
+||||+|||+++|+ +|+|+|+||||||||+|+|+|+||++|+|.|||+|.+|+|++|||||||+++|++|+|+
T Consensus 64 ------~sklP~w~~~~~P~~al~v~EkaWNaYPy~~T~y~~~~~~kf~i~IET~h~~d~g~~eNv~~L~~~~L~~ReV~ 137 (251)
T cd07815 64 ------GSKLPSWLRALAPKSALTIEEKSWNAYPYCKTVYSCPFFEKFSISIESMHKPDLGTQENAHNLSAEQLAQRKVV 137 (251)
T ss_pred ------cccchhHHHHhCCccceEEEhhhhCCCCceeEEEecCCCCcEEEEEEEEEcCCCCCcccccCCCHHHHhCcEEE
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCCCCCCCCCCCCcceecccCCCCCCCCccccCCceEEEEEEeEEEeeecchhHHHHHHHHHHHHHHHHHHH
Q psy1790 162 YLDIAYDEINPKHYKEEEDPKFFQSKKTGRGPLKEGWRDTFEPIMCSYKVVEGAFEVWGLQTKAEDFIQKAIRDILLVGH 241 (299)
Q Consensus 162 ~iDIa~d~i~~k~Y~~~eDp~~f~S~ktgRGPL~~~W~~~~~piMc~YKlV~v~f~~wGlq~kvE~~I~~~~r~i~l~~H 241 (299)
+||||+|++++++|+++|||++|+|+|||||||.+||+++..|+|||||||+|+|+|||||+|||+||++++|++|+++|
T Consensus 138 ~IDIa~d~~~~~dYk~eeDp~~f~S~kTgRGPL~~~W~~~~~PiMcaYKLv~v~f~~wG~q~rvE~~I~~~~r~~~l~~H 217 (251)
T cd07815 138 VIDIANDSVASKDYKPEEDPKLFKSKKTGRGPLRKGWRKSTKPIMCAYKLVTVDFPYWGLQNKVENFIQKVERDVFLNYH 217 (251)
T ss_pred EEeccCCCCCcccCCcccCCchhcccccCCCCCCccccccCCCeEEEEEEEEEEeeeecccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhheecccccCCCHHHHHHhHHHHHHHHhhhcC
Q psy1790 242 RQAFAWLDEWLDMSLTDVRVYEGEMQRATNVKLT 275 (299)
Q Consensus 242 Rq~f~w~DeW~~mTm~dIR~~E~e~~~~l~~k~~ 275 (299)
||||||+||||||||+|||++|+++|++|+++++
T Consensus 218 Rq~fcW~DeW~gltmedIR~~E~e~~~~L~~~~~ 251 (251)
T cd07815 218 RQAFCWIDEWFDLTMEDIREFEEETKELLDAKRK 251 (251)
T ss_pred HHHHhhHHHHcCCCHHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999988763
No 4
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=100.00 E-value=2.8e-119 Score=831.51 Aligned_cols=247 Identities=43% Similarity=0.783 Sum_probs=242.4
Q ss_pred eeEEeeeccccChhHhhhhHHHHhhhhcccccCCCceEEEEEeeeccCCCCCcceeeeEEEEEeccCcchhhhccCCccc
Q psy1790 3 LLKEYRIPMPLTVEEYRIGQLYMIARHSHEQSEDGEGVETIVNISCEDEEHGRGQYTEKRIHLSNRLPYWIQAIGRGQYT 82 (299)
Q Consensus 3 likEyRI~lPltveEY~igQLYmvak~S~eet~~GeGVEvl~Nep~e~~~~g~GqYT~K~~hl~~~~~~~~~~~~~~~~t 82 (299)
|||||||+||||||||||||||||||+|+++||+|||||||+||||+++++|+||||||+|||
T Consensus 1 likEyRi~lPltveEYqigQLY~Vak~S~eet~~GeGVEvl~Nepy~~~~~~~GqYT~Kiyhl----------------- 63 (258)
T cd08888 1 LIKEFRVILPLSVEEYQVGQLYSVAEASKNETGGGEGIEVLVNEPYEKDDGEKGQYTHKIYHL----------------- 63 (258)
T ss_pred CeEEEEEeccCcHHHHHHHHHHHHHHhhHhhcCCCccEEEEeccccccCCCCcceeEEEEEEc-----------------
Confidence 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccccCchHHHHHHhccc-cceeeeeeeccccceeeEEeeccc-cceEEEEEeeEeCCCCCCCCCCCCCHhhhcceee
Q psy1790 83 EKRIHLSNRLPYWIQAIIPK-VFYITEKAWNYYPYTMTEYTCSFI-PKLNIMIRTKFEDNNGSNDNCLGLTEEELLARQV 160 (299)
Q Consensus 83 ~k~~~l~sklP~wi~~~~Pk-~l~v~EkaWNayPy~~T~yt~~~~-~kF~i~IeT~~~~d~g~~eN~~~L~~~~L~~ReV 160 (299)
+||||+|||+++|+ +|+|+|+||||||||+|+|+|+|| ++|+|.|||+|.+|+|++|||||||+++|++|+|
T Consensus 64 ------~sklP~wir~~~P~~al~v~EkaWNaYPy~~T~yt~~~~k~~F~i~IET~h~~d~g~~eNv~~L~~e~L~~ReV 137 (258)
T cd08888 64 ------QSKVPGFVRMLAPEGSLEIHEKAWNAYPYCRTIITNEYMKEDFLIIIETWHKPDLGTQENVHNLDPEEWKEVEV 137 (258)
T ss_pred ------cccchhHHHHhCCCcceEEehhhhcCCCceEEEEecCCcCccEEEEEEEEEcCCCCCccccccCCHHHHhCcEE
Confidence 99999999999999 999999999999999999999999 6899999999999999999999999999999999
Q ss_pred EEeeccCCC-CCCCCCCCCCCCCcceecccCCCCCCCCcccc-----CCceEEEEEEeEEEeeecchhHHHHHHHHHHHH
Q psy1790 161 EYLDIAYDE-INPKHYKEEEDPKFFQSKKTGRGPLKEGWRDT-----FEPIMCSYKVVEGAFEVWGLQTKAEDFIQKAIR 234 (299)
Q Consensus 161 ~~iDIa~d~-i~~k~Y~~~eDp~~f~S~ktgRGPL~~~W~~~-----~~piMc~YKlV~v~f~~wGlq~kvE~~I~~~~r 234 (299)
++||||+|+ +++++|+++|||++|+|+|||||||.+||+++ ..|||||||||+|+|+|||||+|||+|||+++|
T Consensus 138 ~~IDIa~d~~~~~~dYk~eeDP~~f~S~kTgRGPL~~~W~~~~~~~~~~PiMcaYKLv~v~f~~wG~q~rvE~fI~~~~r 217 (258)
T cd08888 138 VYIDIADRSQVDPKDYKADEDPAKFQSEKTGRGPLGPNWKKELVNQKDCPIMCAYKLVTVEFKWWGLQNKVENFIQKQER 217 (258)
T ss_pred EEEecccCCcCCcccCCcccCcccccccccCCCCCCcchhhhcccCCCCCEEEEeEEEEEEEeeecccHHHHHHHHHHHH
Confidence 999999999 59999999999999999999999999999998 579999999999999999999999999999999
Q ss_pred HHHHHHHHHhheecccccCCCHHHHHHhHHHHHHHHhh
Q psy1790 235 DILLVGHRQAFAWLDEWLDMSLTDVRVYEGEMQRATNV 272 (299)
Q Consensus 235 ~i~l~~HRq~f~w~DeW~~mTm~dIR~~E~e~~~~l~~ 272 (299)
++|+++|||||||+||||||||+|||+||+++|++|++
T Consensus 218 ~~fl~~HRq~fcW~DeW~gltmedIR~~E~~t~~~l~~ 255 (258)
T cd08888 218 RLFTNFHRQVFCWLDKWHGLTMDDIRRMEDETKKELDE 255 (258)
T ss_pred HHHHHHHHHHhhhHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999644
No 5
>PF02121 IP_trans: Phosphatidylinositol transfer protein; InterPro: IPR001666 Phosphatidylinositol transfer protein (PITP) is a ubiquitous cytosolic protein, thought to be involved in transport of phospholipids from their site of synthesis in the endoplasmic reticulum and Golgi to other cell membranes []. More recently, PITP has been shown to be an essential component of the polyphosphoinositide synthesis machinery and is hence required for proper signalling by epidermal growth factor and f-Met-Leu-Phe, as well as for exocytosis. The role of PITP in polyphosphoinositide synthesis may also explain its involvement in intracellular vesicular traffic [].; GO: 0006810 transport, 0005622 intracellular; PDB: 1T27_A 1KCM_A 2A1L_A 1UW5_C.
Probab=100.00 E-value=3.6e-118 Score=824.61 Aligned_cols=246 Identities=55% Similarity=0.984 Sum_probs=212.8
Q ss_pred ceeEEeeeccccChhHhhhhHHHHhhhhcccccCC-CceEEEEEeeeccCCCCCcceeeeEEEEEeccCcchhhhccCCc
Q psy1790 2 VLLKEYRIPMPLTVEEYRIGQLYMIARHSHEQSED-GEGVETIVNISCEDEEHGRGQYTEKRIHLSNRLPYWIQAIGRGQ 80 (299)
Q Consensus 2 mlikEyRI~lPltveEY~igQLYmvak~S~eet~~-GeGVEvl~Nep~e~~~~g~GqYT~K~~hl~~~~~~~~~~~~~~~ 80 (299)
||||||||||||||||||||||||||++|+++|+| |||||||+||||+++++|+||||||+|||
T Consensus 1 mlikEyRI~lPltveEY~igQlY~vak~s~~et~g~GeGVEvl~Nep~~~~~g~~GqYT~K~y~l--------------- 65 (254)
T PF02121_consen 1 MLIKEYRIPLPLTVEEYQIGQLYMVAKASKEETGGDGEGVEVLKNEPYEDEPGGKGQYTHKIYHL--------------- 65 (254)
T ss_dssp -EEEEEEEEESS-HHHHHHHHHHHHHHHHHCTSBT-TBEEEEEEEEEEE-TTS-EEEEEEEEEEE---------------
T ss_pred CeeEEEEEeccccHHHHHHHHHHHHHHHhHhhccCCCcceEEEEecccccCCCCceeeEEEEEEe---------------
Confidence 89999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred cceeeccccCchHHHHHHhccc-cceeeeeeeccccceeeEEeeccccceEEEEEeeEeCCCCCCCCCCCCCHhhhccee
Q psy1790 81 YTEKRIHLSNRLPYWIQAIIPK-VFYITEKAWNYYPYTMTEYTCSFIPKLNIMIRTKFEDNNGSNDNCLGLTEEELLARQ 159 (299)
Q Consensus 81 ~t~k~~~l~sklP~wi~~~~Pk-~l~v~EkaWNayPy~~T~yt~~~~~kF~i~IeT~~~~d~g~~eN~~~L~~~~L~~Re 159 (299)
+||||+|||+|+|+ +|+|+|+||||||||+|+|+|+||++|+|.|||+|.+|+|++|||||||+++|++|+
T Consensus 66 --------~sklP~~ir~l~P~~~l~v~E~aWNaYPy~~T~~t~~~~~kF~i~IET~~~~d~G~~eNv~~L~~~~lk~re 137 (254)
T PF02121_consen 66 --------ASKLPSWIRALLPKGALYVHEKAWNAYPYCKTVYTNPYMDKFSIKIETMHKPDNGTSENVFNLSPEELKKRE 137 (254)
T ss_dssp --------TTTS-HHHHTTSTTTTTEEEEEEEEETTEEEEEEEETTTGGEEEEEEEEEESSSS--TTTT---HHHHTTSE
T ss_pred --------cccChHHHHHhCCCceEEEEEEEecccceEEEEEecCCCCceEEEEEEEEcCCCCCcCcccCCCHHHhcCce
Confidence 99999999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEeeccCCCCCCCCCCCCCCCCcceecccCCCCCCCCcccc-----CCceEEEEEEeEEEeeecchhHHHHHHHHHHH-
Q psy1790 160 VEYLDIAYDEINPKHYKEEEDPKFFQSKKTGRGPLKEGWRDT-----FEPIMCSYKVVEGAFEVWGLQTKAEDFIQKAI- 233 (299)
Q Consensus 160 V~~iDIa~d~i~~k~Y~~~eDp~~f~S~ktgRGPL~~~W~~~-----~~piMc~YKlV~v~f~~wGlq~kvE~~I~~~~- 233 (299)
|++||||+|++++++|+++|||++|+|+|||||||.+||+++ ..|+|||||||+|+|+|||||+|||+|||+++
T Consensus 138 V~~IDI~~d~i~~~dyk~~eDp~~f~S~ktgRGPL~~~W~~~~~~~~~~PiMc~YKlv~v~f~~~GlQ~~vE~~I~~~~~ 217 (254)
T PF02121_consen 138 VVFIDIANDPISPKDYKEEEDPTKFKSKKTGRGPLKEDWRKEWKKNGKKPIMCCYKLVTVEFKWWGLQTKVENFIHKQIL 217 (254)
T ss_dssp EEEE-TTGGGS-CCC--GGG-CCC---TTT------TTHHHHHCTSSSS--EEEEEEEEEEE--TTTHHHHHHHHHHHH-
T ss_pred EEEEEecCCcccccccCcccCchheEecCCCCCCCCcchhhhhhhcCCCCEEEEEEEEEEEeeeechHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999987 48999999999999999999999999999998
Q ss_pred HHHHHHHHHHhheecccccCCCHHHHHHhHHHHHHHH
Q psy1790 234 RDILLVGHRQAFAWLDEWLDMSLTDVRVYEGEMQRAT 270 (299)
Q Consensus 234 r~i~l~~HRq~f~w~DeW~~mTm~dIR~~E~e~~~~l 270 (299)
|++|+++|||||||+||||||||+|||++|++||++|
T Consensus 218 r~i~~~~HRq~fcw~DeW~glTmedIR~~E~et~~~L 254 (254)
T PF02121_consen 218 RRIFLNFHRQAFCWIDEWYGLTMEDIRELEEETQEEL 254 (254)
T ss_dssp HHHHHHHHHHHHHTHHHHTT--HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHheehhhhcCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999985
No 6
>KOG3668|consensus
Probab=100.00 E-value=5.8e-116 Score=803.57 Aligned_cols=256 Identities=45% Similarity=0.861 Sum_probs=247.8
Q ss_pred CceeEEeeeccccChhHhhhhHHHHhhhhcccccCCCceEEEEEeeeccCCCCCcceeeeEEEEEeccCcchhhhccCCc
Q psy1790 1 MVLLKEYRIPMPLTVEEYRIGQLYMIARHSHEQSEDGEGVETIVNISCEDEEHGRGQYTEKRIHLSNRLPYWIQAIGRGQ 80 (299)
Q Consensus 1 mmlikEyRI~lPltveEY~igQLYmvak~S~eet~~GeGVEvl~Nep~e~~~~g~GqYT~K~~hl~~~~~~~~~~~~~~~ 80 (299)
|||+|||||+|||||||||||||||||++|++||++|+|||||+||||+|+++|+||||||+|||
T Consensus 1 ~mliKeyri~LPmTvdEY~vgqLy~Vs~~Sr~et~ggeGVEvl~nep~~dg~~g~GqyThKIyhl--------------- 65 (269)
T KOG3668|consen 1 GMLIKEYRIVLPMTVDEYQVGQLYMVSKKSREETGGGEGVEVLKNEPYTDGPGGSGQYTHKIYHL--------------- 65 (269)
T ss_pred CcceeEEEeeccccHHHHHHHHHHHHHHhhhhccCCCcceEEEecCCCcCCCCCccceEEEEEEe---------------
Confidence 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeccccCchHHHHHHhccc-cceeeeeeeccccceeeEEee-ccccceEEEEEeeEeCCCCCCCCCCCCCHhhhcce
Q psy1790 81 YTEKRIHLSNRLPYWIQAIIPK-VFYITEKAWNYYPYTMTEYTC-SFIPKLNIMIRTKFEDNNGSNDNCLGLTEEELLAR 158 (299)
Q Consensus 81 ~t~k~~~l~sklP~wi~~~~Pk-~l~v~EkaWNayPy~~T~yt~-~~~~kF~i~IeT~~~~d~g~~eN~~~L~~~~L~~R 158 (299)
+||+|+|+|+|+|+ ||.|+|+||||||||+|+||| ++.++|+|.|||+|.||+|++||+|+|++++|++|
T Consensus 66 --------~sk~P~~~r~l~Pk~al~v~EesWNAYPy~rT~yTn~~~~d~F~i~IeT~~~~d~G~~eNvf~l~~~~~~~r 137 (269)
T KOG3668|consen 66 --------GSKVPAWLRSLLPKGALIVHEESWNAYPYTRTRYTNYYMKDKFSIKIETIYLDDAGTQENVFGLDPEDLNQR 137 (269)
T ss_pred --------cccchHHHHHhCCccceEEeeecccccceEEEEEecccccccceEEEEEEEcCCCCCCCCcccCChhhccee
Confidence 99999999999999 999999999999999999999 55577999999999999999999999999999999
Q ss_pred eeEEeeccCCCCCCCCCCCCCCCCcceecccCCCCCCCCccccC-C---ceEEEEEEeEEEeeecchhHHHHHHHHHHHH
Q psy1790 159 QVEYLDIAYDEINPKHYKEEEDPKFFQSKKTGRGPLKEGWRDTF-E---PIMCSYKVVEGAFEVWGLQTKAEDFIQKAIR 234 (299)
Q Consensus 159 eV~~iDIa~d~i~~k~Y~~~eDp~~f~S~ktgRGPL~~~W~~~~-~---piMc~YKlV~v~f~~wGlq~kvE~~I~~~~r 234 (299)
+|++||||+|++.+.+|+++|||++|+|+|||||||.++|+++. . |+|||||||+|+|+|||||++||+|||++.|
T Consensus 138 ei~~IDIa~d~v~~~dyk~eeDP~~f~s~kTgRGpL~e~w~~~~~~~~~P~McaYKlvtvefk~wGmQ~~VE~fIhk~~~ 217 (269)
T KOG3668|consen 138 EIVFIDIADDPVPPNDYKAEEDPKLFQSEKTGRGPLDENWWETYKSQGMPVMCAYKLVTVEFKWWGMQTKVENFIHKVER 217 (269)
T ss_pred EEEEEEeecCCCCccccCcccCchhheecccccCCCCcchHHHhhccCCCeEEEeeEEEEEEEeehHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988776 2 9999999999999999999999999999999
Q ss_pred HHHHHHHHHhheecccccCCCHHHHHHhHHHHHHHHhhhcCCCCC
Q psy1790 235 DILLVGHRQAFAWLDEWLDMSLTDVRVYEGEMQRATNVKLTPPPP 279 (299)
Q Consensus 235 ~i~l~~HRq~f~w~DeW~~mTm~dIR~~E~e~~~~l~~k~~~~~~ 279 (299)
++|+.+|||||||+|+||||||+|||++|+++|++|.+++..++.
T Consensus 218 rv~~~~HRqafcw~D~W~gltm~diRe~E~~t~~~l~~~~~~~~~ 262 (269)
T KOG3668|consen 218 RVFTRAHRQAFCWQDEWYGLTMEDIRELEDETQLELIKKRAKGEV 262 (269)
T ss_pred HHHHHHHHHHheehhhhhCccHHHHHHHHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999998777666543
No 7
>PF04707 PRELI: PRELI-like family; InterPro: IPR006797 These proteins contain a conserved region found in the yeast YLR168C gene MSF1 product. The function of this protein is unknown, though it is thought to be involved in intra-mitochondrial protein sorting. GFP-tagged MSF1 localizes to mitochondria and is required for wild-type respiratory growth []. This region is also found in a number of other eukaryotic proteins. The PRELI/MSF1 domain is an eukaryotic protein module which occurs in stand-alone form in several proteins, including the human PRELI protein and the yeast MSF1 protein, and as an amino-terminal domain in an orthologous group of proteins typified by human SEC14L1, which is conserved in all animals. In this group of proteins, the PRELI/MSF1 domain co-occurs with the CRAL-TRIO (see PDOC50191 from PROSITEDOC) and the GOLD domains (see PDOC50866 from PROSITEDOC). The PRELI/MSF1 domain is approximately 170 residues long and is predicted to assume a globular alpha + beta fold with six beta strands and four alpha helices. It has been suggested that the PRELI/MSF1 domain may have a function associated with cellular membrane [].
Probab=95.41 E-value=0.37 Score=41.87 Aligned_cols=35 Identities=31% Similarity=0.442 Sum_probs=25.6
Q ss_pred ccCchHHHHHHhcc-c-cceeeeeeecc-ccceeeEEe
Q psy1790 88 LSNRLPYWIQAIIP-K-VFYITEKAWNY-YPYTMTEYT 122 (299)
Q Consensus 88 l~sklP~wi~~~~P-k-~l~v~EkaWNa-yPy~~T~yt 122 (299)
+...+|+|++.|++ . ..++.|+|+-- =-.+.|.++
T Consensus 43 ~~~~~P~w~~kl~g~~~~~~~~E~S~vD~~~k~l~~~t 80 (157)
T PF04707_consen 43 KKNNLPRWLKKLIGVDSECYIIEESIVDPKNKTLTTKT 80 (157)
T ss_pred eecCchHHHHHHhCcCceEEEEEEEEEECCCCEEEEEE
Confidence 39999999999999 5 68888888652 233444444
No 8
>cd08890 SRPBCC_PITPNC1_like Lipid-binding SRPBCC domain of mammalian PITPNC1,and related proteins (Class IIB PITPs). This subgroup includes the N-terminal SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain of mammalian Class IIB phosphatidylinositol transfer protein (PITP), PITPNC1/RdgBbeta, and related proteins. These are metazoan proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Mammalian PITPNC1 contains an amino-terminal SRPBCC PITP-like domain and a short carboxyl-terminal domain. It is a cytoplasmic protein, and is ubiquitously
Probab=95.21 E-value=0.01 Score=56.18 Aligned_cols=39 Identities=31% Similarity=0.590 Sum_probs=32.6
Q ss_pred CCCCCcceeeeEEEEEeccCcchhhhccCCccceeeccccCchHHHHHHhccc
Q psy1790 50 DEEHGRGQYTEKRIHLSNRLPYWIQAIGRGQYTEKRIHLSNRLPYWIQAIIPK 102 (299)
Q Consensus 50 ~~~~g~GqYT~K~~hl~~~~~~~~~~~~~~~~t~k~~~l~sklP~wi~~~~Pk 102 (299)
+..+|.| +.++.|+||.+..+|+||||+|+ .-|.+=+|.
T Consensus 31 et~~geG------VEvl~Nep~~~~~~~~GqYT~K~--------~hl~sklP~ 69 (250)
T cd08890 31 QSERGEG------VEVVQNEPCEDPEHGNGQFTEKR--------VYLNSRLPS 69 (250)
T ss_pred hcCCCcc------EEEEeccccccCCCCccceeEEE--------EEccccChh
Confidence 3345788 99999999999999999999998 446666776
No 9
>cd07815 SRPBCC_PITP Lipid-binding SRPBCC domain of Class I and Class II Phosphatidylinositol Transfer Proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of the phosphatidylinositol transfer protein (PITP) family of lipid transfer proteins. This family of proteins includes Class 1 PITPs (PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator and related proteins), Class IIA PITPs (PITPNM1/PITPalphaI/Nir2, PITPNM2/PITPalphaII/Nir3, Drosophila RdgB, and related proteins), and Class IIB PITPs (PITPNC1/RdgBbeta and related proteins). The PITP family belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns
Probab=94.76 E-value=0.016 Score=54.84 Aligned_cols=37 Identities=32% Similarity=0.601 Sum_probs=31.0
Q ss_pred CCCcceeeeEEEEEeccCcchhhhccCCccceeeccccCchHHHHHHhccc
Q psy1790 52 EHGRGQYTEKRIHLSNRLPYWIQAIGRGQYTEKRIHLSNRLPYWIQAIIPK 102 (299)
Q Consensus 52 ~~g~GqYT~K~~hl~~~~~~~~~~~~~~~~t~k~~~l~sklP~wi~~~~Pk 102 (299)
..|.| +.++.|+||.+..+|+||||+|+ .-|.+=+|.
T Consensus 33 ~~GeG------VEvl~Nepy~~~~~~~GqYT~Ki--------yhl~sklP~ 69 (251)
T cd07815 33 GSGEG------VEVLKNEPYEDENGGKGQYTHKI--------YHLGSKLPS 69 (251)
T ss_pred CCCcc------EEEEeccCcccCCCCcceeEEEE--------EEccccchh
Confidence 46788 99999999999999999999996 445556666
No 10
>cd08889 SRPBCC_PITPNM1-2_like Lipid-binding SRPBCC domain of mammalian PITPNM1-2 and related proteins (Class IIA PITPs). This subgroup includes an N-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class II phosphatidylinositol transfer protein (PITPs), PITPNM1/PITPalphaI/Nir2 (PYK2 N-terminal domain-interacting receptor2) and PITPNM2/PITPalphaII/Nir3), Drosophila RdgB, and related proteins. These are membrane associated multidomain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. Ablation of the mouse gene en
Probab=94.70 E-value=0.017 Score=54.98 Aligned_cols=36 Identities=39% Similarity=0.613 Sum_probs=30.5
Q ss_pred CCcceeeeEEEEEeccCcchhhhccCCccceeeccccCchHHHHHHhccc
Q psy1790 53 HGRGQYTEKRIHLSNRLPYWIQAIGRGQYTEKRIHLSNRLPYWIQAIIPK 102 (299)
Q Consensus 53 ~g~GqYT~K~~hl~~~~~~~~~~~~~~~~t~k~~~l~sklP~wi~~~~Pk 102 (299)
.|.| +.++.|+||.+..+|+||||+|+ .-|.+=+|.
T Consensus 36 ~GeG------VEvl~Nepy~~~~~~~GqYT~Ki--------yhl~sklP~ 71 (260)
T cd08889 36 EGSG------VEILENRPYTDGPGGSGQYTHKI--------YHIGSHIPG 71 (260)
T ss_pred CCce------EEEEeccccccCCCCcceeEEEE--------EEccccChH
Confidence 4678 89999999999999999999997 445666676
No 11
>PF02121 IP_trans: Phosphatidylinositol transfer protein; InterPro: IPR001666 Phosphatidylinositol transfer protein (PITP) is a ubiquitous cytosolic protein, thought to be involved in transport of phospholipids from their site of synthesis in the endoplasmic reticulum and Golgi to other cell membranes []. More recently, PITP has been shown to be an essential component of the polyphosphoinositide synthesis machinery and is hence required for proper signalling by epidermal growth factor and f-Met-Leu-Phe, as well as for exocytosis. The role of PITP in polyphosphoinositide synthesis may also explain its involvement in intracellular vesicular traffic [].; GO: 0006810 transport, 0005622 intracellular; PDB: 1T27_A 1KCM_A 2A1L_A 1UW5_C.
Probab=94.67 E-value=0.012 Score=55.68 Aligned_cols=26 Identities=38% Similarity=0.642 Sum_probs=22.5
Q ss_pred CcceeeeEEEEEeccCcchhhhccCCccceee
Q psy1790 54 GRGQYTEKRIHLSNRLPYWIQAIGRGQYTEKR 85 (299)
Q Consensus 54 g~GqYT~K~~hl~~~~~~~~~~~~~~~~t~k~ 85 (299)
|.| +.++.|+||.+..+|+||||+|+
T Consensus 37 GeG------VEvl~Nep~~~~~g~~GqYT~K~ 62 (254)
T PF02121_consen 37 GEG------VEVLKNEPYEDEPGGKGQYTHKI 62 (254)
T ss_dssp TBE------EEEEEEEEEE-TTS-EEEEEEEE
T ss_pred Ccc------eEEEEecccccCCCCceeeEEEE
Confidence 788 89999999999999999999996
No 12
>cd08888 SRPBCC_PITPNA-B_like Lipid-binding SRPBCC domain of mammalian PITPNA, -B, and related proteins (Class I PITPs). This subgroup includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of mammalian Class 1 phosphatidylinositol transfer proteins (PITPs), PITPNA/PITPalpha and PITPNB/PITPbeta, Drosophila vibrator, and related proteins. These are single domain proteins belonging to the PITP family of lipid transfer proteins, and to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. In vitro, PITPs bind phosphatidylinositol (PtdIns), as well as phosphatidylcholine (PtdCho) but with a lower affinity. They transfer these lipids from one membrane compartment to another. The cellular roles of PITPs include inositol lipid signaling, PtdIns metabolism, and membrane trafficking. In addition, PITPNB transfers sphingomyelin in vitro, with a low affinity. PITPNA is found chiefly in the nucleus and cy
Probab=94.25 E-value=0.025 Score=53.80 Aligned_cols=37 Identities=35% Similarity=0.539 Sum_probs=31.0
Q ss_pred CCCcceeeeEEEEEeccCcchhhhccCCccceeeccccCchHHHHHHhccc
Q psy1790 52 EHGRGQYTEKRIHLSNRLPYWIQAIGRGQYTEKRIHLSNRLPYWIQAIIPK 102 (299)
Q Consensus 52 ~~g~GqYT~K~~hl~~~~~~~~~~~~~~~~t~k~~~l~sklP~wi~~~~Pk 102 (299)
.+|.| +.++.|+||.+..+|+||||.|+ .-|.+=+|.
T Consensus 33 ~~GeG------VEvl~Nepy~~~~~~~GqYT~Ki--------yhl~sklP~ 69 (258)
T cd08888 33 GGGEG------IEVLVNEPYEKDDGEKGQYTHKI--------YHLQSKVPG 69 (258)
T ss_pred CCCcc------EEEEeccccccCCCCcceeEEEE--------EEccccchh
Confidence 35788 99999999999999999999997 445566676
No 13
>KOG3668|consensus
Probab=92.92 E-value=0.064 Score=51.06 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=30.7
Q ss_pred CCcceeeeEEEEEeccCcchhhhccCCccceeeccccCchHHHHHHhccc
Q psy1790 53 HGRGQYTEKRIHLSNRLPYWIQAIGRGQYTEKRIHLSNRLPYWIQAIIPK 102 (299)
Q Consensus 53 ~g~GqYT~K~~hl~~~~~~~~~~~~~~~~t~k~~~l~sklP~wi~~~~Pk 102 (299)
+|.| +.++.|+||.+..+|+||||.|+ .-|++=+|.
T Consensus 36 ggeG------VEvl~nep~~dg~~g~GqyThKI--------yhl~sk~P~ 71 (269)
T KOG3668|consen 36 GGEG------VEVLKNEPYTDGPGGSGQYTHKI--------YHLGSKVPA 71 (269)
T ss_pred CCcc------eEEEecCCCcCCCCCccceEEEE--------EEecccchH
Confidence 5788 99999999999999999999996 455666666
No 14
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=61.41 E-value=16 Score=31.47 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=31.3
Q ss_pred eEEEeeecchhHHHHHHHHHHHHHHHHHHHHHhheec
Q psy1790 212 VEGAFEVWGLQTKAEDFIQKAIRDILLVGHRQAFAWL 248 (299)
Q Consensus 212 V~v~f~~wGlq~kvE~~I~~~~r~i~l~~HRq~f~w~ 248 (299)
.+|++++..+++++|++|...+++.|-.-++.+-.||
T Consensus 123 g~v~v~VPlvGgkiE~~v~~~~~~~~~~e~~~~~~wl 159 (159)
T PF10698_consen 123 GEVKVKVPLVGGKIEKAVAENLRKLLEAEQEFTAEWL 159 (159)
T ss_pred EEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4566677788899999999999999999988877775
No 15
>PF11191 DUF2782: Protein of unknown function (DUF2782); InterPro: IPR021357 This is a bacterial family of proteins whose function is unknown.
Probab=36.17 E-value=3.7 Score=33.52 Aligned_cols=13 Identities=85% Similarity=1.479 Sum_probs=9.5
Q ss_pred ChhHhhh-hHHHHh
Q psy1790 14 TVEEYRI-GQLYMI 26 (299)
Q Consensus 14 tveEY~i-gQLYmv 26 (299)
++||||+ ||+|||
T Consensus 50 ~ieEyRv~G~l~~I 63 (105)
T PF11191_consen 50 TIEEYRVNGQLYMI 63 (105)
T ss_pred EEEEEEECCeEeeE
Confidence 4677776 788886
No 16
>PF12162 STAT1_TAZ2bind: STAT1 TAZ2 binding domain; InterPro: IPR022752 This entry represents the C-terminal domain of STAT1, which selectively binds the TAZ2 domain of CRB (CREB-binding protein) []. This group of eukaryotic proteins is approximately 20 amino acids in length, and is found in association with PF02865 from PFAM, PF00017 from PFAM, PF01017 from PFAM, PF02864 from PFAM. By binding to CRB, it becomes a transcriptional activator and can initiate transcription of certain genes. ; GO: 0003700 sequence-specific DNA binding transcription factor activity; PDB: 2KA6_B.
Probab=35.41 E-value=18 Score=22.97 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=6.0
Q ss_pred ccccChhHhhh
Q psy1790 10 PMPLTVEEYRI 20 (299)
Q Consensus 10 ~lPltveEY~i 20 (299)
.||||.|+|.-
T Consensus 7 mmPMSPddy~~ 17 (23)
T PF12162_consen 7 MMPMSPDDYDE 17 (23)
T ss_dssp ---S-HHHHHH
T ss_pred ccCCCHHHHHH
Confidence 59999999973
No 17
>COG3369 Zinc finger domain containing protein (CDGSH-type) [Function unknown]
Probab=30.22 E-value=33 Score=27.64 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=25.4
Q ss_pred CcceeeeEEEEEeccCcchhhhccCCccc
Q psy1790 54 GRGQYTEKRIHLSNRLPYWIQAIGRGQYT 82 (299)
Q Consensus 54 g~GqYT~K~~hl~~~~~~~~~~~~~~~~t 82 (299)
+..||+..+-=.|+|+||||-.|++=-|+
T Consensus 27 g~~~~~LCrCG~S~NKPfCDGtH~k~gf~ 55 (78)
T COG3369 27 GDEQAALCRCGHSENKPFCDGTHKKTGFD 55 (78)
T ss_pred cceEEEEEeccCcCCCCccCCcccccccc
Confidence 57888999999999999999999987665
No 18
>PF10544 T5orf172: T5orf172 domain; InterPro: IPR018306 This entry represents a DNA-binding domain found in bacteriophage T5, ORF172 []. The domain is related to the Bro-N and KilA-N domains that are widespread in large-DNA viruses infecting bacteria and eukaryotes [].
Probab=28.66 E-value=1e+02 Score=23.43 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhh---eecccccCCCHHHHHHh
Q psy1790 221 LQTKAEDFIQKAIRDILLVGHRQAF---AWLDEWLDMSLTDVRVY 262 (299)
Q Consensus 221 lq~kvE~~I~~~~r~i~l~~HRq~f---~w~DeW~~mTm~dIR~~ 262 (299)
-..++|+.||+.+++ ||.-+ +=--|||.++.+++++.
T Consensus 56 ~~~~~E~~ih~~l~~-----~~~~~~~~~~~~E~F~~~~~~~~~~ 95 (100)
T PF10544_consen 56 DARKVERLIHRELKD-----YRYRIPCPDGHTEWFKLDPEEVRAV 95 (100)
T ss_pred CHHHHHHHHHHHHHH-----hCccccCCCCCCEEEECCHHHHHHH
Confidence 368899999998766 22222 11569999999988764
No 19
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=20.78 E-value=58 Score=30.10 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=32.6
Q ss_pred HHHHHHhheecccccCCCHHHHHHhHHHHHHHHhhhcC
Q psy1790 238 LVGHRQAFAWLDEWLDMSLTDVRVYEGEMQRATNVKLT 275 (299)
Q Consensus 238 l~~HRq~f~w~DeW~~mTm~dIR~~E~e~~~~l~~k~~ 275 (299)
+...|--|.|+|||+|+..++-+....-+++.|.+++.
T Consensus 61 i~w~~v~if~~DEr~~Vp~~~~~Sn~~~~~~~l~~~~~ 98 (253)
T PTZ00285 61 VSFSNVVTFNMDEYVGLPRDHPQSYHYFMKENFFDHVD 98 (253)
T ss_pred CchhHeEEECCcEEecCCCCchHHHHHHHHHHHhccCC
Confidence 34567778999999999999999999999999888864
No 20
>PF01452 Rota_NSP4: Rotavirus non structural protein; InterPro: IPR002107 This entry contains rotaviral non-structural protein 4 (NSP4) as well as related proteins: NSP5, NS28, and NCVP5. The final steps in the assembly of rotavirus occur in the lumen of the endoplasmic reticulum (ER). Targeting of the immature inner capsid particle (ICP) to this compartment is mediated by the cytoplasmic tail of NSP4, located in the ER membrane [, ].; PDB: 2O1J_D 1G1J_B 1G1I_B 2O1K_B 3MIW_A.
Probab=20.36 E-value=90 Score=28.38 Aligned_cols=38 Identities=34% Similarity=0.504 Sum_probs=14.0
Q ss_pred EEEEEeEEE--------eeecch--hHHHHHHHHHHHHHHHHHHHHHh
Q psy1790 207 CSYKVVEGA--------FEVWGL--QTKAEDFIQKAIRDILLVGHRQA 244 (299)
Q Consensus 207 c~YKlV~v~--------f~~wGl--q~kvE~~I~~~~r~i~l~~HRq~ 244 (299)
|+||+|.+- .+.+|. |---++-|.+++-+|.....||+
T Consensus 63 csYKViky~ivTI~N~llklaGykeqittkDeie~qmdrivkemrrQl 110 (173)
T PF01452_consen 63 CSYKVIKYCIVTIFNTLLKLAGYKEQITTKDEIEKQMDRIVKEMRRQL 110 (173)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHH
T ss_pred ccceEEEEEEEeehhhHHHHhcccccCCcHHHHHHHHHHHHHHHHHHH
Confidence 899987654 457888 66667888999989988888886
Done!