Query psy1790
Match_columns 299
No_of_seqs 118 out of 269
Neff 4.1
Searched_HMMs 29240
Date Fri Aug 16 17:00:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1kcm_A PITP alpha, phosphatidy 100.0 1E-117 4E-122 824.8 24.2 259 2-284 1-267 (270)
2 1kcm_A PITP alpha, phosphatidy 91.7 0.046 1.6E-06 51.0 1.1 37 52-102 34-70 (270)
3 1b0n_B Protein (SINI protein); 17.5 55 0.0019 23.6 1.6 12 252-263 25-36 (57)
4 3hym_A Anaphase-promoting comp 13.4 77 0.0026 20.3 1.3 17 252-268 9-25 (29)
5 1wr3_A Ubiquitin-protein ligas 11.9 73 0.0025 19.9 0.9 13 190-202 1-13 (36)
6 2ki0_A DS119; beta-alpha-beta, 11.1 1.9E+02 0.0065 18.9 2.7 23 250-273 8-30 (36)
7 3bpj_A Eukaryotic translation 10.6 1.6E+02 0.0053 22.2 2.5 27 252-278 49-75 (80)
8 2h88_D Succinate dehydrogenase 10.5 74 0.0025 25.1 0.7 15 218-232 48-62 (103)
9 3hn6_A Glucosamine-6-phosphate 10.0 69 0.0023 29.2 0.4 34 243-276 87-120 (289)
10 1ne7_A Glucosamine-6-phosphate 10.0 73 0.0025 28.6 0.5 36 241-276 64-99 (289)
No 1
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*
Probab=100.00 E-value=1.3e-117 Score=824.81 Aligned_cols=259 Identities=40% Similarity=0.735 Sum_probs=241.2
Q ss_pred ceeEEeeeccccChhHhhhhHHHHhhhhcccccCCCceEEEEEeeeccCCCCCcceeeeEEEEEeccCcchhhhccCCcc
Q psy1790 2 VLLKEYRIPMPLTVEEYRIGQLYMIARHSHEQSEDGEGVETIVNISCEDEEHGRGQYTEKRIHLSNRLPYWIQAIGRGQY 81 (299)
Q Consensus 2 mlikEyRI~lPltveEY~igQLYmvak~S~eet~~GeGVEvl~Nep~e~~~~g~GqYT~K~~hl~~~~~~~~~~~~~~~~ 81 (299)
|||||||||||||||||||||||||||+|+++||+|||||||+||||+++++++||||||+|||
T Consensus 1 ~likEyRi~lPltveEY~igQlY~vak~S~~etg~GeGVEvl~Nepy~~~~g~~GqYT~Kiyhl---------------- 64 (270)
T 1kcm_A 1 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDDGEKGQYTHKIYHL---------------- 64 (270)
T ss_dssp CEEEEEEEEESSCHHHHHHHHHHHHHHHHTTCSSTTTTEEEEEEEEEECTTSCEEEEEEEEEEC----------------
T ss_pred CceEEEEEecCCCHHHHHHHHHHHHHHhhHhhcCCCceEEEEeccccccCCCCccceEEEEEEc----------------
Confidence 8999999999999999999999999999999999999999999999999777899999999999
Q ss_pred ceeeccccCchHHHHHHhccc-cceeeeeeeccccceeeEEeecccc-ceEEEEEeeEeCCCCCCCCCCCCCHhhhccee
Q psy1790 82 TEKRIHLSNRLPYWIQAIIPK-VFYITEKAWNYYPYTMTEYTCSFIP-KLNIMIRTKFEDNNGSNDNCLGLTEEELLARQ 159 (299)
Q Consensus 82 t~k~~~l~sklP~wi~~~~Pk-~l~v~EkaWNayPy~~T~yt~~~~~-kF~i~IeT~~~~d~g~~eN~~~L~~~~L~~Re 159 (299)
+||||+|||+++|+ +|+|+|+||||||||+|+|||+||+ +|+|.|||+|.+|+|++|||||||+++|++|+
T Consensus 65 -------~sklP~wi~~~~P~~al~v~EkaWNayPy~~T~yt~~~~~~kF~i~IET~h~~d~g~~eNv~~L~~~~l~~re 137 (270)
T 1kcm_A 65 -------QSKVPTFVRMLAPEGALNIHEKAWNAYPYCRTVITNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVE 137 (270)
T ss_dssp -------GGGSCHHHHTTSCTTTTEEEEEEEEETTEEEEEEEETTTGGGEEEEEEEEEESSSSCCSSTTCCCHHHHTTCE
T ss_pred -------cccChHHHHHhCCccceEEEeehhccCcceeeEecCCCcCcceEEEEEEEEcCCCCCcccccCCChHHhcCce
Confidence 99999999999999 9999999999999999999999996 69999999999999999999999999999999
Q ss_pred eEEeeccCC-CCCCCCCCCCCCCCcceecccCCCCCCCCccccC-----CceEEEEEEeEEEeeecchhHHHHHHHHHHH
Q psy1790 160 VEYLDIAYD-EINPKHYKEEEDPKFFQSKKTGRGPLKEGWRDTF-----EPIMCSYKVVEGAFEVWGLQTKAEDFIQKAI 233 (299)
Q Consensus 160 V~~iDIa~d-~i~~k~Y~~~eDp~~f~S~ktgRGPL~~~W~~~~-----~piMc~YKlV~v~f~~wGlq~kvE~~I~~~~ 233 (299)
|++||||+| +++++||+++|||++|+|+|||||||.+||++++ .|+|||||||+|+|+|||||+|||+|||+++
T Consensus 138 V~~IDIa~~~~~~~~dY~~eeDp~~f~S~ktgRGPL~~~W~~~~~~~~~~PiMc~YKLv~v~f~~wGlq~rvE~fI~~~~ 217 (270)
T 1kcm_A 138 AIYIDIADRSQVLSKDYKAEEDPAKFKSVKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQE 217 (270)
T ss_dssp EEEECTTCGGGSCGGGCCGGGCTTTCCCTTTCCCCCCTTHHHHHTTSTTCCCEEEEEEEEEEECCSSCHHHHHHHHHHHH
T ss_pred EEEEecccCcccccccCCcccCcchheecccCCCCCCcchhhhccccCCCceEEEEEEEEEEEeecCchHHHHHHHHHHH
Confidence 999999986 5999999999999999999999999999998764 5999999999999999999999999999999
Q ss_pred HHHHHHHHHHhheecccccCCCHHHHHHhHHHHHHHHhhhcCCCCCCCCCC
Q psy1790 234 RDILLVGHRQAFAWLDEWLDMSLTDVRVYEGEMQRATNVKLTPPPPTLPTP 284 (299)
Q Consensus 234 r~i~l~~HRq~f~w~DeW~~mTm~dIR~~E~e~~~~l~~k~~~~~~~~~~~ 284 (299)
|++|+++|||||||+|||+||||+|||+||+++|++| ++++..++.+++.
T Consensus 218 r~i~~~~HRq~fcW~DeW~glTmedIR~~E~etq~~L-~~~~~~~~~~~~~ 267 (270)
T 1kcm_A 218 KRLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQL-DEMRQKDPVKGMT 267 (270)
T ss_dssp HHHHHHHHHHHHHTHHHHTTCCHHHHHHHHHHHHHCC-CC-----------
T ss_pred HHHHHHHHHHHhccHHHHcCCCHHHHHHHHHHHHHHH-HHHHhccccCCcc
Confidence 9999999999999999999999999999999999995 5677777666654
No 2
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha; phospholipid binding protein, phospholipid transport, binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4 PDB: 1t27_A* 1uw5_A* 2a1l_A*
Probab=91.74 E-value=0.046 Score=51.00 Aligned_cols=37 Identities=32% Similarity=0.541 Sum_probs=29.7
Q ss_pred CCCcceeeeEEEEEeccCcchhhhccCCccceeeccccCchHHHHHHhccc
Q psy1790 52 EHGRGQYTEKRIHLSNRLPYWIQAIGRGQYTEKRIHLSNRLPYWIQAIIPK 102 (299)
Q Consensus 52 ~~g~GqYT~K~~hl~~~~~~~~~~~~~~~~t~k~~~l~sklP~wi~~~~Pk 102 (299)
.+|.| +.++.|+||.+..+|+||||+|+ .-|.+-+|.
T Consensus 34 g~GeG------VEvl~Nepy~~~~g~~GqYT~Ki--------yhl~sklP~ 70 (270)
T 1kcm_A 34 GGGEG------VEVLVNEPYEKDDGEKGQYTHKI--------YHLQSKVPT 70 (270)
T ss_dssp STTTT------EEEEEEEEEECTTSCEEEEEEEE--------EECGGGSCH
T ss_pred CCCce------EEEEeccccccCCCCccceEEEE--------EEccccChH
Confidence 35788 99999999998777899999996 344555665
No 3
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=17.47 E-value=55 Score=23.62 Aligned_cols=12 Identities=25% Similarity=0.476 Sum_probs=10.5
Q ss_pred cCCCHHHHHHhH
Q psy1790 252 LDMSLTDVRVYE 263 (299)
Q Consensus 252 ~~mTm~dIR~~E 263 (299)
.|||++|||++=
T Consensus 25 lGlsleEIrefL 36 (57)
T 1b0n_B 25 ANISPEEIRKYL 36 (57)
T ss_dssp TTCCHHHHHHHH
T ss_pred cCCCHHHHHHHH
Confidence 599999999873
No 4
>3hym_A Anaphase-promoting complex subunit CDC26; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=13.37 E-value=77 Score=20.27 Aligned_cols=17 Identities=24% Similarity=0.507 Sum_probs=13.6
Q ss_pred cCCCHHHHHHhHHHHHH
Q psy1790 252 LDMSLTDVRVYEGEMQR 268 (299)
Q Consensus 252 ~~mTm~dIR~~E~e~~~ 268 (299)
..+++|||-+||..-|+
T Consensus 9 I~l~~eDi~e~E~~rke 25 (29)
T 3hym_A 9 LELKLDDIEEFENIRKD 25 (29)
T ss_dssp CCCCSGGGHHHHHHHHH
T ss_pred EEecHHHHHHHHHHHHH
Confidence 46899999999986554
No 5
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=11.86 E-value=73 Score=19.93 Aligned_cols=13 Identities=38% Similarity=1.009 Sum_probs=10.1
Q ss_pred CCCCCCCCccccC
Q psy1790 190 GRGPLKEGWRDTF 202 (299)
Q Consensus 190 gRGPL~~~W~~~~ 202 (299)
|-+||.+||....
T Consensus 1 g~~~LP~GWe~~~ 13 (36)
T 1wr3_A 1 GSPPLPPGWEEKV 13 (36)
T ss_dssp CCSCSCTTEEEEE
T ss_pred CCCCCCCCCEEEE
Confidence 5689999998654
No 6
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=11.09 E-value=1.9e+02 Score=18.87 Aligned_cols=23 Identities=17% Similarity=0.494 Sum_probs=19.3
Q ss_pred cccCCCHHHHHHhHHHHHHHHhhh
Q psy1790 250 EWLDMSLTDVRVYEGEMQRATNVK 273 (299)
Q Consensus 250 eW~~mTm~dIR~~E~e~~~~l~~k 273 (299)
-|-|=|-+++.++-+|.+++ |-+
T Consensus 8 iwvggtpeelkklkeeakka-nir 30 (36)
T 2ki0_A 8 IWVGGTPEELKKLKEEAKKA-NIR 30 (36)
T ss_dssp CCBCCCHHHHHHHHHHHHHH-CCC
T ss_pred EEecCCHHHHHHHHHHHHhc-cEE
Confidence 38899999999999998887 544
No 7
>3bpj_A Eukaryotic translation initiation factor 3 subuni; EIF3S1, structural genomics, limited proteolysis, phosphoprotein, protein biosynthesis; 1.85A {Homo sapiens}
Probab=10.65 E-value=1.6e+02 Score=22.18 Aligned_cols=27 Identities=7% Similarity=0.186 Sum_probs=22.2
Q ss_pred cCCCHHHHHHhHHHHHHHHhhhcCCCC
Q psy1790 252 LDMSLTDVRVYEGEMQRATNVKLTPPP 278 (299)
Q Consensus 252 ~~mTm~dIR~~E~e~~~~l~~k~~~~~ 278 (299)
-+|+.+|||++..-+..-.|+|++.+-
T Consensus 49 ~~L~~~dikkv~s~l~~l~nEK~K~EK 75 (80)
T 3bpj_A 49 ISLEIDDLKKITNSLTVLCSEKQKQEK 75 (80)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 479999999999999988899987653
No 8
>2h88_D Succinate dehydrogenase cytochrome B, small subun; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D* 3abv_D* 3ae1_D* 3ae2_D* 3ae3_D* 3ae4_D* 3ae5_D* 3ae6_D* 3ae7_D* 3ae8_D* 3ae9_D* 3aea_D* 3aeb_D* 3aec_D* ...
Probab=10.48 E-value=74 Score=25.08 Aligned_cols=15 Identities=27% Similarity=0.709 Sum_probs=13.2
Q ss_pred ecchhHHHHHHHHHH
Q psy1790 218 VWGLQTKAEDFIQKA 232 (299)
Q Consensus 218 ~wGlq~kvE~~I~~~ 232 (299)
.||||.-+|++|++.
T Consensus 48 ~~G~q~vI~DYv~~~ 62 (103)
T 2h88_D 48 HWGLGQVITDYVHGD 62 (103)
T ss_dssp HHHHHHHHHHHCCSH
T ss_pred HHhcCeeeecccccc
Confidence 489999999999963
No 9
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=10.00 E-value=69 Score=29.21 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=28.6
Q ss_pred HhheecccccCCCHHHHHHhHHHHHHHHhhhcCC
Q psy1790 243 QAFAWLDEWLDMSLTDVRVYEGEMQRATNVKLTP 276 (299)
Q Consensus 243 q~f~w~DeW~~mTm~dIR~~E~e~~~~l~~k~~~ 276 (299)
--+-|+|||+|+..++-.-+...+++.|++++..
T Consensus 87 v~~f~~DEr~gvp~~~~~Sn~~~~~~~Ll~~v~i 120 (289)
T 3hn6_A 87 VITFNMDEYIGIEENHPESYHSFMWNNFFSHIDI 120 (289)
T ss_dssp EEEEESEEESSCCTTSTTSHHHHHHHHTGGGSCC
T ss_pred eEEEeCcceecCCCCcHHHHHHHHHHHhhccCCC
Confidence 3467899999999999999999999998888753
No 10
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=9.98 E-value=73 Score=28.56 Aligned_cols=36 Identities=11% Similarity=0.049 Sum_probs=29.5
Q ss_pred HHHhheecccccCCCHHHHHHhHHHHHHHHhhhcCC
Q psy1790 241 HRQAFAWLDEWLDMSLTDVRVYEGEMQRATNVKLTP 276 (299)
Q Consensus 241 HRq~f~w~DeW~~mTm~dIR~~E~e~~~~l~~k~~~ 276 (299)
.+--|.|+|||.|+..++-.-....+.+.|.+++..
T Consensus 64 ~~v~v~~lDEr~gv~~~~~~Sn~~~~~~~l~~~~~~ 99 (289)
T 1ne7_A 64 KYVKTFNMDEYVGLPRDHPESYHSFMWNNFFKHIDI 99 (289)
T ss_dssp TTEEEEESEEETTSCTTSTTSHHHHHHHHTGGGSCC
T ss_pred hheEEEeCceeecCCCCcHHHHHHHHHHHhhccCCC
Confidence 345578999999999988888888899998888754
Done!