RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1790
(299 letters)
>1kcm_A PITP alpha, phosphatidylinositol transfer protein alpha;
phospholipid binding protein, phospholipid transport,
binding protein; 2.00A {Mus musculus} SCOP: d.129.3.4
PDB: 1t27_A* 1uw5_A* 2a1l_A*
Length = 270
Score = 315 bits (807), Expect = e-108
Identities = 103/285 (36%), Positives = 151/285 (52%), Gaps = 29/285 (10%)
Query: 2 VLLKEYRIPMPLTVEEYRIGQLYMIARHSHEQSEDGEGVETIVNISCEDEEHGRGQYTEK 61
VLLKEYR+ +P++V+EY++GQLY +A S ++ GEGVE +VN E ++ +GQYT K
Sbjct: 1 VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDDGEKGQYTHK 60
Query: 62 RIHLSNRLPYWIQAIGRGQYTEKRIHLSNRLPYWIQAIIPKVFYITEKAWNYYPYTMTEY 121
HL +++P +++ + I EKAWN YPY T
Sbjct: 61 IYHLQSKVPTFVRML----------------------APEGALNIHEKAWNAYPYCRTVI 98
Query: 122 TCSFIPK-LNIMIRTKFEDNNGSNDNCLGLTEEELLARQVEYLDIA-YDEINPKHYKEEE 179
T ++ + I I T + + G+ +N L E + Y+DIA ++ K YK EE
Sbjct: 99 TNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAIYIDIADRSQVLSKDYKAEE 158
Query: 180 DPKFFQSKKTGRGPLKEGWRDTFE-----PIMCSYKVVEGAFEVWGLQTKAEDFIQKAIR 234
DP F+S KTGRGPL W+ P MC+YK+V F+ WGLQ K E+FI K +
Sbjct: 159 DPAKFKSVKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQEK 218
Query: 235 DILLVGHRQAFAWLDEWLDMSLTDVRVYEGEMQRATNVKLTPPPP 279
+ HRQ F WLD+W+D+++ D+R E E +R + P
Sbjct: 219 RLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLDEMRQKDPV 263
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.035
Identities = 28/138 (20%), Positives = 50/138 (36%), Gaps = 18/138 (13%)
Query: 154 ELLARQVEYLDIAYDEINPKHYKEEEDPKFFQSKKTGRGPLKEGWRDTFEPIMCSYKVVE 213
E Q +Y DI + + + D K Q + L ++ + I+ S V
Sbjct: 10 ETGEHQYQYKDIL--SVFEDAFVDNFDCKDVQDMP--KSILS---KEEIDHIIMSKDAVS 62
Query: 214 GAFEV-WGLQTKAEDFIQKAIRDILLVGHRQAFAWL-----DEWLDMSLTDVRVYEGEMQ 267
G + W L +K E+ +QK + ++L R + +L E S+ R+Y +
Sbjct: 63 GTLRLFWTLLSKQEEMVQKFVEEVL----RINYKFLMSPIKTEQRQPSM-MTRMYIEQRD 117
Query: 268 RATNVKLTPPPPTLPTPP 285
R N +
Sbjct: 118 RLYNDNQVFAKYNVSRLQ 135
Score = 30.2 bits (67), Expect = 0.99
Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 49/162 (30%)
Query: 143 SNDNCLGLTEEELLARQVEYLDIAYDEINPKHYKEEEDPKFFQSKKTGRGPL-------- 194
+ + + LT +E+ + ++YLD + ++ P+ + T P
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDC----------RPQDLPR--EVLTT--NPRRLSIIAES 336
Query: 195 KEGWRDTFEPIMCSYKVVEGAFEVWGLQTKAEDFIQKAIRDILLVGHRQAFAWL-----D 249
T++ +K V K I+ ++ + +R+ F L
Sbjct: 337 IRDGLATWDN----WKHVN--------CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 250 E----------WLDMSLTDVRVYEGEMQRATNVKLTPPPPTL 281
W D+ +DV V ++ + + V+ P T+
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI 426
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A
{Pachyrhizus erosus} PDB: 2b1n_A*
Length = 246
Score = 28.0 bits (63), Expect = 3.9
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 3/51 (5%)
Query: 107 TEKAWNYYPYTMTEYTCSFIPKLNIMIRTKFEDNNGSNDNCLGLTEEELLA 157
+E YPY + C + + + SN++ E L +
Sbjct: 84 SEAD---YPYKARDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQS 131
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen
channel, FAD, flavoprotein, oxidoreductase; HET: FAD
SUC; 1.54A {Chromobacterium SP}
Length = 540
Score = 28.3 bits (62), Expect = 4.2
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 2/25 (8%)
Query: 275 TPPPPTLPTPPTPTPTSPKSWFNWA 299
T P P P +S+ NWA
Sbjct: 1 TCSQP--NNFPAEIPLYKQSFKNWA 23
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta
barrel, alpha helix, beta flaps, structural protein;
2.49A {Acetivibrio cellulolyticus}
Length = 227
Score = 27.5 bits (60), Expect = 4.5
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 270 TNVKLTPPPPTLPTPPTPTPTSP 292
T T P TL PT T T+
Sbjct: 187 TAFASTMPTVTLTPTPTATTTTT 209
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 27.9 bits (62), Expect = 5.8
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 2/31 (6%)
Query: 65 LSNRLPYWIQAIGRGQYTE--KRIHLSNRLP 93
+ +I +I Y K I N L
Sbjct: 93 THLDIKSFITSISNKNYYGAAKMIFSDNPLG 123
>1nqk_A Alkanesulfonate monooxygenase; structural genomics, beta barrel,
PSI, protein structure INI midwest center for structural
genomics, MCSG; 2.20A {Escherichia coli} SCOP: c.1.16.4
PDB: 1m41_A
Length = 381
Score = 27.4 bits (61), Expect = 6.2
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 239 VGHRQAFAWLDEWLDM---SLTDVRV-YEGEMQRATNVKLTPPPPTLPTPP 285
+ H + + E+ + L V + G+ KL P P PP
Sbjct: 123 LDHSERYEASAEFTQVWRRLLQRETVDFNGKHIHVRGAKLLFPAIQQPYPP 173
>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1
Length = 93
Score = 25.5 bits (56), Expect = 7.9
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 263 EGEMQRATNVKLTPPPPTLPTPPTPTPTS 291
E ++A + K PPT+ T P+S
Sbjct: 64 SSENEKAVSPKKALLPPTVSLSATSGPSS 92
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.431
Gapped
Lambda K H
0.267 0.0691 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,012,120
Number of extensions: 302001
Number of successful extensions: 977
Number of sequences better than 10.0: 1
Number of HSP's gapped: 968
Number of HSP's successfully gapped: 22
Length of query: 299
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 206
Effective length of database: 4,105,140
Effective search space: 845658840
Effective search space used: 845658840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.8 bits)