RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1790
         (299 letters)



>d1t27a_ d.129.3.4 (A:) Phoshatidylinositol transfer protein, PITP
           {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 269

 Score =  339 bits (871), Expect = e-118
 Identities = 102/277 (36%), Positives = 150/277 (54%), Gaps = 29/277 (10%)

Query: 2   VLLKEYRIPMPLTVEEYRIGQLYMIARHSHEQSEDGEGVETIVNISCEDEEHGRGQYTEK 61
           VLLKEYR+ +P++V+EY++GQLY +A  S  ++  GEGVE +VN   E ++  +GQYT K
Sbjct: 1   VLLKEYRVILPVSVDEYQVGQLYSVAEASKNETGGGEGVEVLVNEPYEKDDGEKGQYTHK 60

Query: 62  RIHLSNRLPYWIQAIGRGQYTEKRIHLSNRLPYWIQAIIPKVFYITEKAWNYYPYTMTEY 121
             HL +++P +++ +                             I EKAWN YPY  T  
Sbjct: 61  IYHLQSKVPTFVRML----------------------APEGALNIHEKAWNAYPYCRTVI 98

Query: 122 TCSFIPK-LNIMIRTKFEDNNGSNDNCLGLTEEELLARQVEYLDIA-YDEINPKHYKEEE 179
           T  ++ +   I I T  + + G+ +N   L  E     +  Y+DIA   ++  K YK EE
Sbjct: 99  TNEYMKEDFLIKIETWHKPDLGTQENVHKLEPEAWKHVEAIYIDIADRSQVLSKDYKAEE 158

Query: 180 DPKFFQSKKTGRGPLKEGWRDTFE-----PIMCSYKVVEGAFEVWGLQTKAEDFIQKAIR 234
           DP  F+S KTGRGPL   W+         P MC+YK+V   F+ WGLQ K E+FI K  +
Sbjct: 159 DPAKFKSIKTGRGPLGPNWKQELVNQKDCPYMCAYKLVTVKFKWWGLQNKVENFIHKQEK 218

Query: 235 DILLVGHRQAFAWLDEWLDMSLTDVRVYEGEMQRATN 271
            +    HRQ F WLD+W+D+++ D+R  E E +R  +
Sbjct: 219 RLFTNFHRQLFCWLDKWVDLTMDDIRRMEEETKRQLD 255


>d1evsa_ a.26.1.1 (A:) Oncostatin M {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 184

 Score = 26.9 bits (59), Expect = 2.1
 Identities = 8/17 (47%), Positives = 8/17 (47%)

Query: 275 TPPPPTLPTPPTPTPTS 291
           T        PPTPTP S
Sbjct: 138 TKAGRGASQPPTPTPAS 154


>d1nhpa3 d.87.1.1 (A:322-447) NADH peroxidase {Enterococcus faecalis
           [TaxId: 1351]}
          Length = 126

 Score = 26.0 bits (57), Expect = 3.5
 Identities = 6/46 (13%), Positives = 13/46 (28%), Gaps = 3/46 (6%)

Query: 149 GLTEEELLARQVEYLDIAYDEINPKHYKEEEDP---KFFQSKKTGR 191
           G+ E        E   +   E     +  ++     K     +T +
Sbjct: 19  GINEVMAQKLGKETKAVTVVEDYLMDFNPDKQKAWFKLVYDPETTQ 64


>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
           [TaxId: 5053]}
          Length = 422

 Score = 26.9 bits (59), Expect = 3.7
 Identities = 7/23 (30%), Positives = 9/23 (39%), Gaps = 2/23 (8%)

Query: 274 LTPPPPTLPTPPTPTPTSPKSWF 296
           L        T   P PT P S++
Sbjct: 391 LATAFGL--TASIPIPTIPTSFY 411


>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase
           {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}
          Length = 388

 Score = 26.2 bits (56), Expect = 5.3
 Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 10/30 (33%)

Query: 273 KLTPPPPTLPTP----------PTPTPTSP 292
           K TPPP +L  P          P P+  S 
Sbjct: 1   KFTPPPASLRNPLIIPEKIMMGPGPSNCSK 30


>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 93

 Score = 24.3 bits (52), Expect = 8.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 260 RVYEGEMQRATNVKLTPPPPTLPTPPTPTPTS 291
           ++   E ++A + K    PPT+    T  P+S
Sbjct: 61  KMPSSENEKAVSPKKALLPPTVSLSATSGPSS 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0424    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,260,544
Number of extensions: 62102
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 9
Length of query: 299
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 214
Effective length of database: 1,240,546
Effective search space: 265476844
Effective search space used: 265476844
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)