Query psy17900
Match_columns 157
No_of_seqs 103 out of 105
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 17:01:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ug3_A EIF4GI, eukaryotic prot 100.0 5.5E-32 1.9E-36 229.1 10.2 148 1-157 172-322 (339)
2 3l6a_A Eukaryotic translation 100.0 1.2E-30 4.2E-35 223.8 13.2 145 1-157 169-327 (364)
3 1paq_A Translation initiation 100.0 1.2E-27 4E-32 188.9 13.2 121 36-157 20-144 (189)
4 3jui_A Translation initiation 99.9 2.7E-26 9.3E-31 180.3 15.8 121 36-157 12-136 (182)
5 3d3m_A Eukaryotic translation 99.9 7.9E-25 2.7E-29 169.6 12.0 117 41-157 3-131 (168)
6 2ful_A EIF-5, eukaryotic trans 99.5 1.2E-14 4.2E-19 113.6 6.8 72 73-157 48-120 (177)
7 2iu1_A EIF5, eukaryotic transl 99.2 4.7E-11 1.6E-15 95.5 8.7 71 75-157 43-114 (208)
8 1h2v_C 80 kDa nuclear CAP bind 94.5 0.15 5.2E-06 47.2 9.1 94 41-141 480-581 (771)
9 4b8b_A General negative regula 63.1 88 0.003 28.3 13.0 111 36-153 445-558 (603)
10 3f7c_A Protein of unknown func 57.4 29 0.00098 27.0 6.4 65 10-74 126-193 (200)
11 3tq7_B Microtubule-associated 52.2 11 0.00039 25.3 2.9 33 124-156 27-60 (82)
12 1wjt_A Transcription elongatio 44.8 52 0.0018 22.7 5.5 68 42-115 17-88 (103)
13 3mtu_A Tropomyosin alpha-1 cha 40.0 33 0.0011 22.3 3.7 30 127-156 38-68 (75)
14 1pqv_S STP-alpha, transcriptio 38.6 1.5E+02 0.0052 24.0 8.3 63 52-119 16-82 (309)
15 2hl7_A Cytochrome C-type bioge 37.8 45 0.0015 22.3 4.1 28 39-66 45-72 (84)
16 2kw0_A CCMH protein; oxidoredu 36.0 49 0.0017 22.5 4.1 29 39-67 42-70 (90)
17 1ic8_A Hepatocyte nuclear fact 35.0 72 0.0025 24.3 5.5 39 41-81 15-53 (194)
18 4dox_A Coat protein; all helix 31.6 69 0.0024 25.4 4.9 65 53-118 32-108 (226)
19 1eum_A Ferritin 1; ECFTNA, met 30.1 1.5E+02 0.0052 21.1 6.7 28 13-40 26-53 (165)
20 3b1j_C CP12; alpha/beta fold, 29.7 21 0.00073 18.8 1.1 12 130-141 6-17 (26)
21 2rg8_A Programmed cell death p 29.1 1.5E+02 0.0051 21.7 6.2 50 36-88 7-56 (165)
22 1unk_A Colicin E7; immunity pr 29.0 49 0.0017 22.4 3.2 34 40-73 35-82 (87)
23 1ifl_A Inovirus; helical virus 29.0 99 0.0034 19.0 4.2 29 75-111 22-50 (53)
24 1ifk_A Inovirus; helical virus 28.0 1.1E+02 0.0036 18.7 4.2 29 75-111 20-48 (51)
25 4e61_A Protein BIM1; EB1-like 27.3 38 0.0013 23.8 2.4 16 141-156 85-100 (106)
26 3g1g_A GAG polyprotein, capsid 26.2 1.1E+02 0.0037 20.7 4.5 67 11-77 14-86 (87)
27 1fr2_A Colicin E9 immunity pro 24.5 1.6E+02 0.0055 19.6 6.7 58 53-111 9-76 (86)
28 1r4w_A Glutathione S-transfera 24.5 1.2E+02 0.0041 22.5 5.1 44 10-53 134-179 (226)
29 3omd_A Uncharacterized protein 23.0 2.2E+02 0.0077 20.8 6.6 49 43-94 62-110 (145)
30 2nsz_A Programmed cell death p 22.8 1.8E+02 0.0061 20.2 5.4 50 36-88 4-53 (129)
31 1lko_A Rubrerythrin all-iron(I 22.8 94 0.0032 23.3 4.1 37 13-51 29-65 (191)
32 1gxg_A Colicin E8 immunity pro 21.9 1.8E+02 0.0062 19.3 7.3 54 53-112 9-76 (85)
33 4g26_A Pentatricopeptide repea 21.6 3.7E+02 0.013 22.7 10.5 78 46-124 111-192 (501)
34 2ion_A PDCD4, programmed cell 21.5 1.9E+02 0.0063 20.9 5.4 50 36-88 6-55 (152)
35 2r8u_A Microtubule-associated 20.6 21 0.00072 29.0 0.0 50 106-156 200-250 (268)
36 2k0d_X IMME7, colicin-E7 immun 20.6 58 0.002 22.7 2.3 21 53-73 76-96 (101)
37 3q8i_A Odorant binding protein 20.6 2E+02 0.0067 19.2 5.9 40 70-109 34-76 (124)
38 1j30_A 144AA long hypothetical 20.1 1.1E+02 0.0037 21.4 3.8 28 13-40 29-56 (144)
No 1
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=99.97 E-value=5.5e-32 Score=229.11 Aligned_cols=148 Identities=17% Similarity=0.229 Sum_probs=128.5
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCchhHHHHHHHHhHH--HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHH
Q psy17900 1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQ--EAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELI 78 (157)
Q Consensus 1 ~~ffP~~kR~~~~~~~~f~~~gL~~l~~~~~~~~~~--~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i 78 (157)
++|||+++| +.++|+++||+++++++.++.++ ...++++++|.+++++|.++++||.|||+++.++++++++|+
T Consensus 172 ~~f~P~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~~~~~ev~~~L~~~l~~~~~~~~i~~~i~~~~~~~~~~~~~~~ 247 (339)
T 1ug3_A 172 KEFLPEGQD----IGAFVAEQKVEYTLGEESEAPGQRALPSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLV 247 (339)
T ss_dssp GGTSCTTCC----HHHHHHHTTCGGGC----------CCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCHHHHTCHHHH
T ss_pred HHhCCCchh----HHHHHHHCCceeecCCcccccccccCCHHHHHHHHHHHHHcCCCHHHHHHHHHhcCChhhCChHHHH
Confidence 479999998 88999999999999999888877 578899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhh-hhccchHhHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC
Q psy17900 79 VLIWSTVMAQ-VEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL 157 (157)
Q Consensus 79 ~~iw~~lm~~-v~ws~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kil~~LY~~DV 157 (157)
+++|+++|++ ++|++. + ....+++++|+|||++|+++. ++|+++|+++|++||++.+++++|.+|++.|||.||
T Consensus 248 ~~l~~a~~~~~~~~~~~--~--~~~~~~l~~~~pll~~~~~~~-~~ql~~L~alQ~~~~~~~~~~~~l~~~~~~LYd~dV 322 (339)
T 1ug3_A 248 RALMTAVCYSAIIFETP--L--RVDVAVLKARAKLLQKYLCDE-QKELQALYALQALVVTLEQPPNLLRMFFDALYDEDV 322 (339)
T ss_dssp HHHHHHHHHHTEECSSS--C--EECHHHHHHHHHHHHHHCCSH-HHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCCc--h--HHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHhccChHHHHHHHHHHHhCcch
Confidence 9999999998 588653 2 223478999999999999888 999999999999999999999999999999999997
No 2
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.2e-30 Score=223.75 Aligned_cols=145 Identities=19% Similarity=0.336 Sum_probs=131.7
Q ss_pred CCCCCCCCCCHHHHHHHHhhcCchhHHHHHHHHhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHH
Q psy17900 1 MEFVPPNKRSDEYFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVL 80 (157)
Q Consensus 1 ~~ffP~~kR~~~~~~~~f~~~gL~~l~~~~~~~~~~~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~ 80 (157)
++|||+++|+.++|.++|+++||++|+++. +++++|.+++++|.++++|+.|||+++.++.+++++||++
T Consensus 169 ~~FlPe~~~~~~~~~e~~~~~~L~~l~~~~----------~l~~~L~~~l~~~~~~~~i~~wik~n~~~~~~~~~~fir~ 238 (364)
T 3l6a_A 169 QKMLPEIDQNKDRMLEILEGKGLSFLFPLL----------KLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNI 238 (364)
T ss_dssp GGGSCGGGCSHHHHHHHHHHHTCGGGCHHH----------HHHHHHHHHHHHCCCHHHHHHHHHHHSCHHHHTCHHHHHH
T ss_pred HHhCCccccchhHHHHHHHhCCCcccCCHH----------HHHHHHHHHHHcCCChHHHHHHHHHhCCcccCCCHHHHHH
Confidence 379999999999999999999999999865 7999999999999999999999999999999999999999
Q ss_pred HHHHHHhhh--hcc------------chHhHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHhhhcchhhHHHH
Q psy17900 81 IWSTVMAQV--EWN------------KKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQ 146 (157)
Q Consensus 81 iw~~lm~~v--~ws------------~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~ 146 (157)
||+++|++| +|| +|.++.. +.+.|++|+|||.+|+++..+.|+++|+++|.+|+++.++.++|+
T Consensus 239 L~t~v~~~~~~~~~~~~~~~d~~~~~~k~~~~~--~~~~l~~~~~ll~~~~~~~~~~q~~~L~alq~~~~~~~~~~~~l~ 316 (364)
T 3l6a_A 239 LMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQ--EKQLLLSFKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLL 316 (364)
T ss_dssp HHHHHHHHHHHHHC----------CCCHHHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHHHHHHHHHHhcccccccccccccccHHHHHH--HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhccccHHHHH
Confidence 999999999 565 2444443 446899999999999999834599999999999999877888999
Q ss_pred HHHHHHhhcCC
Q psy17900 147 KIILLFYKRGL 157 (157)
Q Consensus 147 kil~~LY~~DV 157 (157)
+|++.|||.||
T Consensus 317 ~il~~LYd~Di 327 (364)
T 3l6a_A 317 RFFVHFYDMEI 327 (364)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHhhh
Confidence 99999999997
No 3
>1paq_A Translation initiation factor EIF-2B epsilon subunit; heat repeat, AA motif; 2.30A {Saccharomyces cerevisiae} SCOP: a.118.1.14
Probab=99.95 E-value=1.2e-27 Score=188.85 Aligned_cols=121 Identities=12% Similarity=0.171 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhh-hccchHhH-HHHHHHHHHhhHhhHH
Q psy17900 36 QEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQV-EWNKKEEL-VAEQALKHLKQFTPLF 113 (157)
Q Consensus 36 ~~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v-~ws~k~~~-~~e~a~~~lkk~~pLL 113 (157)
..|++|++++|.|++++|+++++|+.+||++++++|+|++||+++||+|+|+++ +|++++.+ ..+++.++|++|+|||
T Consensus 20 ~~F~~Ev~~sL~r~~~e~~~~d~iilEin~lr~a~n~s~~ev~~~v~~a~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ll 99 (189)
T 1paq_A 20 EDFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQTLGPKDAVVKVFNQWGLLF 99 (189)
T ss_dssp -CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHGGGG
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH
Confidence 458899999999999999999999999999999999999999999999999999 89887655 7789999999999999
Q ss_pred HHhcCCCcHHHHHHHHHHHHHhh--hcchhhHHHHHHHHHHhhcCC
Q psy17900 114 GAFTDTAPRAELALMLKVQEFCY--ENMNLMRVFQKIILLFYKRGL 157 (157)
Q Consensus 114 ~~F~~~~~~~ql~LL~kvQ~~Cy--e~~~~mk~F~kil~~LY~~DV 157 (157)
.+||++. +.|+.+|+++|.||+ ++.++++.|++|++.||+.||
T Consensus 100 ~~~~~~~-~~q~~lL~ale~~~~~~~~~~~~~~~~~il~~LYd~Di 144 (189)
T 1paq_A 100 KRQAFDE-EEYIDLMNIIMEKIVEQSFDKPDLILFSALVSLYDNDI 144 (189)
T ss_dssp GGTCCSH-HHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHcCc-HHHHHHHHHHHHHHHhccChhHHHHHHHHHHHhccccc
Confidence 9999988 999999999999999 899999999999999999997
No 4
>3jui_A Translation initiation factor EIF-2B subunit EPSI; heat repeat, guanine nucleotide exchange factor, disease mutation, leukodystrophy; 2.00A {Homo sapiens} SCOP: a.118.1.0
Probab=99.94 E-value=2.7e-26 Score=180.26 Aligned_cols=121 Identities=18% Similarity=0.298 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhh--ccc--hHhHHHHHHHHHHhhHhh
Q psy17900 36 QEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVE--WNK--KEELVAEQALKHLKQFTP 111 (157)
Q Consensus 36 ~~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v~--ws~--k~~~~~e~a~~~lkk~~p 111 (157)
..|.+|+.++|.|++++|+++++++.+||++++++|+|++||+++||.|+|+++. |++ ......+++.+.|++|+|
T Consensus 12 ~~F~~Ev~~sl~ra~~e~~~~d~~~LEinslr~a~N~s~~eV~~av~~ail~~~~~~~~~~~~~~~~~~a~~~~i~~~~~ 91 (182)
T 3jui_A 12 KVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSP 91 (182)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHGGGGGCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhcccccChhhHHHHHHHHHHHHHH
Confidence 4566799999999999999999999999999999999999999999999999983 565 456677799999999999
Q ss_pred HHHHhcCCCcHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC
Q psy17900 112 LFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL 157 (157)
Q Consensus 112 LL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kil~~LY~~DV 157 (157)
||.+||++. +.|+++|+++|.+|+++..+++.|++|++.|||.||
T Consensus 92 ll~~~~~~~-~~q~~lL~ale~~~~~~~~~~~~~~~il~~LYd~Di 136 (182)
T 3jui_A 92 VFRNYIKRA-ADHLEALAAIEDFFLEHEALGISMAKVLMAFYQLEI 136 (182)
T ss_dssp HHHHHCCSH-HHHHHHHHHHHHHHHHCGGGGGGHHHHHHHHHHTTS
T ss_pred HHHHHhCCH-HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHhhcch
Confidence 999999998 999999999999999999999999999999999997
No 5
>3d3m_A Eukaryotic translation initiation factor 4 gamma 2; heat repeat domain, structural genomics, PSI, protein structure initiative; 1.90A {Homo sapiens}
Probab=99.92 E-value=7.9e-25 Score=169.58 Aligned_cols=117 Identities=18% Similarity=0.298 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhhc--cc-hHh--H-------HHHHHHHHHhh
Q psy17900 41 ELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEW--NK-KEE--L-------VAEQALKHLKQ 108 (157)
Q Consensus 41 el~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v~w--s~-k~~--~-------~~e~a~~~lkk 108 (157)
+++++|.++|++|+++++|+++|+++....++|++||++++|+++|+++.| ++ +.+ + +.+++.+++++
T Consensus 3 ~~~~~L~~~l~~~~~~~~i~~~i~en~~~~~~s~~ev~~al~~avl~~i~~~~~~~~~~~d~~~~~~k~~~~~~~~~l~~ 82 (168)
T 3d3m_A 3 KLEKELLKQIKLDPSPQTIYKWIKDNISPKLHVDKGFVNILMTSFLQYISSEVNPPSDETDSSSAPSKEQLEQEKQLLLS 82 (168)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHSCGGGGGCHHHHHHHHHHHHHHHHHHHSCCC-------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHhcCCcccCCHHHHHHHHHHHHHHHHHHhccccccccccccccchhHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999999999988 43 322 2 45799999999
Q ss_pred HhhHHHHhcCCCcHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhcCC
Q psy17900 109 FTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYKRGL 157 (157)
Q Consensus 109 ~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kil~~LY~~DV 157 (157)
|+|+|.+|+++..++|+++|+++|.+|+++..+++.|++|++.|||.||
T Consensus 83 ~~~ll~~~~~~~~~~q~~lL~alq~~~~~~~~~~~~~~~il~~LYd~Dv 131 (168)
T 3d3m_A 83 FKPVMQKFLHDHVDLQVSALYALQVHCYNSNFPKGMLLRFFVHFYDMEI 131 (168)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHhhcch
Confidence 9999999999733999999999999999999999999999999999997
No 6
>2ful_A EIF-5, eukaryotic translation initiation factor 5; atypical heat motif; 1.50A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.2e-14 Score=113.64 Aligned_cols=72 Identities=15% Similarity=0.341 Sum_probs=66.4
Q ss_pred ChHHHHHHHHHHHHhhhhccchHhHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHh-hhcchhhHHHHHHHHH
Q psy17900 73 PDQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC-YENMNLMRVFQKIILL 151 (157)
Q Consensus 73 ~~~e~i~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~C-ye~~~~mk~F~kil~~ 151 (157)
..++++.++|.++|+. ++.++|++|+|||.+||++. +.|+.+|+++|.+| +++.++++.|++|++.
T Consensus 48 ~~~~~~~vl~~~lf~~------------~i~~~l~k~~~lL~~~~~~~-~~q~~lL~ale~~~~~~~~~~~~~~~~IL~~ 114 (177)
T 2ful_A 48 NDPKIGCVLAQCLFDE------------DIVNEIAEHNAFFTKILVTP-EYEKNFMGGIERFLGLEHKDLIPLLPKILVQ 114 (177)
T ss_dssp TCTTHHHHHHHHSCST------------THHHHTTSCHHHHHHHCCSH-HHHHHHHHHHHHHHHTTCGGGGGGHHHHHHH
T ss_pred hhhHHHHHHHHHHhch------------hHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence 3489999999999962 56789999999999999888 99999999999999 7899999999999999
Q ss_pred HhhcCC
Q psy17900 152 FYKRGL 157 (157)
Q Consensus 152 LY~~DV 157 (157)
||+.||
T Consensus 115 LYd~DI 120 (177)
T 2ful_A 115 LYNNDI 120 (177)
T ss_dssp HHHTTS
T ss_pred Hhccch
Confidence 999997
No 7
>2iu1_A EIF5, eukaryotic translation initiation factor 5; MFC, GTP-binding, phosphorylation, protein biosynthesis, translation inititation; 1.8A {Homo sapiens}
Probab=99.20 E-value=4.7e-11 Score=95.46 Aligned_cols=71 Identities=13% Similarity=0.221 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhhhhccchHhHHHHHHHHHHhhHhhHHHHhcCCCcHHHHHHHHHHHHHh-hhcchhhHHHHHHHHHHh
Q psy17900 75 QELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFC-YENMNLMRVFQKIILLFY 153 (157)
Q Consensus 75 ~e~i~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~C-ye~~~~mk~F~kil~~LY 153 (157)
+....++..++++. ++.++|++|+|||.+||++..+.|+.+|+++|.|| +++..+++.|++|++.||
T Consensus 43 ~~~~~vl~e~lf~~------------~i~~~l~k~~~lL~~~~~~~~~~Q~~lL~alE~~~~~~~~~~~~~~~~IL~~LY 110 (208)
T 2iu1_A 43 AMGPLVLTEVLFNE------------KIREQIKKYRRHFLRFCHNNKKAQRYLLHGLECVVAMHQAQLISKIPHILKEMY 110 (208)
T ss_dssp GGHHHHHHHHHCST------------THHHHHHHTHHHHHHHHTTCHHHHHHHHHHHHHHHHHTHHHHGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 45555555665532 56789999999999999843399999999999996 555688999999999999
Q ss_pred hcCC
Q psy17900 154 KRGL 157 (157)
Q Consensus 154 ~~DV 157 (157)
+.||
T Consensus 111 D~DI 114 (208)
T 2iu1_A 111 DADL 114 (208)
T ss_dssp HTTS
T ss_pred ccch
Confidence 9997
No 8
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=94.48 E-value=0.15 Score=47.25 Aligned_cols=94 Identities=13% Similarity=0.202 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCC-------C-hHHHHHHHHHHHHhhhhccchHhHHHHHHHHHHhhHhhH
Q psy17900 41 ELQEQLEEQISEGASIKDIVADIREIANKHCI-------P-DQELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPL 112 (157)
Q Consensus 41 el~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~-------~-~~e~i~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~pL 112 (157)
.+.++|..++.+..++++|+.++++......- + ++..+.++|+|++... +| . ---....|.+|.++
T Consensus 480 ~~a~~l~~~ir~k~~~eei~~~l~~i~~~~~~~~~~~~~~~~~~~i~v~~q~ll~~G---sk--S-~SH~~~~lery~~~ 553 (771)
T 1h2v_C 480 SVALCLAVAFKSKATNDEIFSILKDVPNPNQDDDDDEGFSFNPLKIEVFVQTLLHLA---AK--S-FSHSFSALAKFHEV 553 (771)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHGGGCC-------------CCHHHHHHHHHHHHHHS---TT--C-HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHhchhcccccccccccccchHHHHHHHHHHHHhc---cc--h-HHHHHHHHHHHHHH
Confidence 36778889999999999999999983322211 1 1258889999999775 11 1 12556788999999
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHhhhcchh
Q psy17900 113 FGAFTDTAPRAELALMLKVQEFCYENMNL 141 (157)
Q Consensus 113 L~~F~~~~~~~ql~LL~kvQ~~Cye~~~~ 141 (157)
|..++.+. +.|..+|..+-.|.-.+...
T Consensus 554 lk~l~~~~-~~q~~il~~v~~~W~~~~q~ 581 (771)
T 1h2v_C 554 FKTLAESD-EGKLHVLRVMFEVWRNHPQM 581 (771)
T ss_dssp HHHHTSSH-HHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCH-HHHHHHHHHHHHHHhcCCce
Confidence 99999988 99999999999999887654
No 9
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=63.06 E-value=88 Score=28.28 Aligned_cols=111 Identities=19% Similarity=0.238 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhhccch---HhHHHHHHHHHHhhHhhH
Q psy17900 36 QEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKK---EELVAEQALKHLKQFTPL 112 (157)
Q Consensus 36 ~~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v~ws~k---~~~~~e~a~~~lkk~~pL 112 (157)
.+.++|+..-+.++.+.+.++++++..++..+.+.+-.|.|+-.++..++.+--.+=.+ +++.. .-.=|+.+
T Consensus 445 ~dIE~ean~yfqkmY~~eisI~~iV~~L~~~K~S~~~rdqdvFaCMIh~LFdEyrff~~YP~~eL~i-----TA~LFG~L 519 (603)
T 4b8b_A 445 NDIEKEMQNYLQKMYSGELAIKDVIELLRRLRDSDLPRDQEVFTCITHAVIAESTFFQDYPLDALAT-----TSVLFGSM 519 (603)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHGGGGGGSCHHHHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHH
Confidence 46899999999999999999999999999999988888999999988888876532222 22221 11226777
Q ss_pred HHHhcCCCcHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHh
Q psy17900 113 FGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFY 153 (157)
Q Consensus 113 L~~F~~~~~~~ql~LL~kvQ~~Cye~~~~mk~F~kil~~LY 153 (157)
+..=+-++.... ..|.-|=+.|-++. =.|+|.-.+.-||
T Consensus 520 I~~~Ll~~~~L~-iALr~ILeAlrkp~-~skmf~FGi~ALe 558 (603)
T 4b8b_A 520 ILFQLLRGFVLD-VAFRIIMRFAKEPP-ESKMFKFAVQAIY 558 (603)
T ss_dssp HHTTSSCHHHHH-HHHHHHHHHHTSCT-TSHHHHHHHHHHH
T ss_pred HHHcccCcchHH-HHHHHHHHHHhCCC-CCcHHHHHHHHHH
Confidence 766666663333 34455555666531 1345555554443
No 10
>3f7c_A Protein of unknown function (DUF416); structural genomics, joint center for structural genomics, J protein structure initiative; HET: CIT; 2.00A {Marinobacter aquaeolei VT8}
Probab=57.40 E-value=29 Score=27.03 Aligned_cols=65 Identities=14% Similarity=0.172 Sum_probs=51.6
Q ss_pred CHHHHHHHHhhcCchh--HHHHHHHHhHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHhhcCCCh
Q psy17900 10 SDEYFRTVFEEKGLAD--IVKLHMAQASQEAKKELQEQLEEQISEGAS-IKDIVADIREIANKHCIPD 74 (157)
Q Consensus 10 ~~~~~~~~f~~~gL~~--l~~~~~~~~~~~~~kel~~~L~~~i~~~~~-~~~ii~~ik~~~~~~~~~~ 74 (157)
|-..|.+.=.++.|++ ++.+.+....-.-+.++|..+.+.+++-.. ..+.|..+|.......+|-
T Consensus 126 TVa~f~e~~~~~el~~~el~~~~~~h~lm~~E~~~Q~~l~~~L~~~~~~~~e~ik~Lr~~~~~~GvSN 193 (200)
T 3f7c_A 126 TVMDFVEMSEGEGMDENELVRVFEHHPLLKDDKLFQRDTVMALYYYRTPKEAFLAELRAGAANDGVSN 193 (200)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHGGGCCT
T ss_pred HHHHHHHHhcCcCCCcHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHcCccc
Confidence 4466777767777766 888888888888889999999999998764 5589999998888777664
No 11
>3tq7_B Microtubule-associated protein RP/EB family membe; CAP-Gly domain, protein-protein interaction, microtubule BIN cytoskeleton, protein binding; 2.30A {Homo sapiens} SCOP: a.245.1.1
Probab=52.17 E-value=11 Score=25.33 Aligned_cols=33 Identities=18% Similarity=0.295 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhhhcchh-hHHHHHHHHHHhhcC
Q psy17900 124 ELALMLKVQEFCYENMNL-MRVFQKIILLFYKRG 156 (157)
Q Consensus 124 ql~LL~kvQ~~Cye~~~~-mk~F~kil~~LY~~D 156 (157)
--.=|..|+..|.++..- ..+-.+|..+||.++
T Consensus 27 YF~KLRdIEiLcQ~~e~~~~~~~~~I~~ILYaTe 60 (82)
T 3tq7_B 27 YFSKLRDIELICQEHESENSPVISGIIGILYATE 60 (82)
T ss_dssp HHHHHHHHHHHHHTC-----CHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHhccccchHHHHHHHHHHhccc
Confidence 344577888899987544 467789999999875
No 12
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=44.77 E-value=52 Score=22.66 Aligned_cols=68 Identities=16% Similarity=0.181 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHH----HHHHHHHHhhhhccchHhHHHHHHHHHHhhHhhHHHH
Q psy17900 42 LQEQLEEQISEGASIKDIVADIREIANKHCIPDQELI----VLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGA 115 (157)
Q Consensus 42 l~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i----~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~pLL~~ 115 (157)
+...|..+.. +.+.+.++..++.+ ...++|..-+. |.....+-++ .....+...|...+++|+.++..
T Consensus 17 i~k~L~k~~~-~~~~~~~l~~L~~L-~~~~iT~e~L~~T~IGk~Vn~LrKh----~~~~~V~~lAk~Lv~~WK~~v~~ 88 (103)
T 1wjt_A 17 IAKKLEKMVS-RKKTEGALDLLKKL-NSCQMSIQLLQTTRIGVAVNGVRKH----CSDKEVVSLAKVLIKNWKRLLDS 88 (103)
T ss_dssp HHHHHHHHHH-TTCCSSHHHHHHHH-HTSCCCHHHHHHTCHHHHHHHHHHH----CCCSHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHH-hCCCCCHHHHHHcchhHHHHHHHcc----CCcHHHHHHHHHHHHHHHHHHHH
Confidence 4555666554 35567788888888 44566655443 3333333332 12245677999999999988754
No 13
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=40.05 E-value=33 Score=22.34 Aligned_cols=30 Identities=23% Similarity=0.412 Sum_probs=22.6
Q ss_pred HHHHHHHHhhhcch-hhHHHHHHHHHHhhcC
Q psy17900 127 LMLKVQEFCYENMN-LMRVFQKIILLFYKRG 156 (157)
Q Consensus 127 LL~kvQ~~Cye~~~-~mk~F~kil~~LY~~D 156 (157)
=|..++..|.++.. ..++-.+|..+||.++
T Consensus 38 KLRdiE~l~q~~e~e~~~l~~~I~~ILYat~ 68 (75)
T 3mtu_A 38 KLRNIELICQENEGENDPVLQRIVDILYATD 68 (75)
T ss_dssp HHHHHHHHHHHTGGGTCHHHHHHHHHHHCBT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccC
Confidence 46667788888643 3578899999999875
No 14
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=38.61 E-value=1.5e+02 Score=23.99 Aligned_cols=63 Identities=3% Similarity=0.040 Sum_probs=43.9
Q ss_pred cCCCHHHHHHHHHHHHhhcCCChHHH----HHHHHHHHHhhhhccchHhHHHHHHHHHHhhHhhHHHHhcCC
Q psy17900 52 EGASIKDIVADIREIANKHCIPDQEL----IVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTPLFGAFTDT 119 (157)
Q Consensus 52 ~~~~~~~ii~~ik~~~~~~~~~~~e~----i~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~pLL~~F~~~ 119 (157)
.+.+++.++..++.+....+++..-+ ||.....|-++ +...+...|...|++|+.++..=...
T Consensus 16 ~~~~~~~~l~~L~~L~~~~~it~~~L~~T~IG~~Vn~lrkh-----~~~~v~~~Ak~Li~~WK~~v~~~~~~ 82 (309)
T 1pqv_S 16 NKSNDAAVLEILHVLDKEFVPTEKLLRETKVGVEVNKFKKS-----TNVEISKLVKKMISSWKDAINKNKRS 82 (309)
T ss_pred cCCCHHHHHHHHHHHHhcCCCCHHHHHhCChhHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHHHHhccC
Confidence 35778899999999988888875443 23333333332 12347779999999999999886554
No 15
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=37.76 E-value=45 Score=22.34 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy17900 39 KKELQEQLEEQISEGASIKDIVADIREI 66 (157)
Q Consensus 39 ~kel~~~L~~~i~~~~~~~~ii~~ik~~ 66 (157)
-+.|...+.++|.+|.+-++|+.++-+.
T Consensus 45 A~dlR~~V~~~l~~G~sd~eI~~~~v~R 72 (84)
T 2hl7_A 45 AADLRKQIYGQLQQGKSDGEIVDYMVAR 72 (84)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3578888999999999999999887664
No 16
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=35.99 E-value=49 Score=22.51 Aligned_cols=29 Identities=28% Similarity=0.357 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy17900 39 KKELQEQLEEQISEGASIKDIVADIREIA 67 (157)
Q Consensus 39 ~kel~~~L~~~i~~~~~~~~ii~~ik~~~ 67 (157)
-+.|...+.++|.+|.+-++|+.++-+.=
T Consensus 42 A~dlR~~Vre~l~~G~Sd~eI~~~mv~RY 70 (90)
T 2kw0_A 42 ATDLRQKVYELMQEGKSKKEIVDYMVARY 70 (90)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 35788889999999999999998877653
No 17
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=35.02 E-value=72 Score=24.35 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHH
Q psy17900 41 ELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLI 81 (157)
Q Consensus 41 el~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~i 81 (157)
++++.+.++. ..++-++...|++.+...+++..++...+
T Consensus 15 ~~~~~ie~~~--~e~p~~l~~~Ik~~l~~~gitQ~~lA~~~ 53 (194)
T 1ic8_A 15 HQKAVVETLL--QEDPWRVAKMVKSYLQQHNIPQREVVDTT 53 (194)
T ss_dssp HHHHHHHHHT--TSCHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHH--ccCHHHHHHHHHHHHHHcCCCHHHHHHHh
Confidence 4566666666 45788999999999999999999987654
No 18
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=31.61 E-value=69 Score=25.35 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=45.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhh--------ccch---HhHHHHHHHHHHhhH-hhHHHHhcC
Q psy17900 53 GASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVE--------WNKK---EELVAEQALKHLKQF-TPLFGAFTD 118 (157)
Q Consensus 53 ~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v~--------ws~k---~~~~~e~a~~~lkk~-~pLL~~F~~ 118 (157)
..+..+-+..|......-.+|...+..++|+-.+--.+ +.+. .....+.+...|+++ ++ |+.||.
T Consensus 32 ~vAT~eei~~I~~~l~~lGvp~~~v~~~~~~la~~Cad~gSS~~~~~~G~~~~~~i~~~~la~~ik~~~~T-LRqfCr 108 (226)
T 4dox_A 32 LLPSQEQLKSVSTLMVAAKVPAASVTTVALELVNFCYDNGSSAYTTVTGPSSIPEISLAQLASIVKASGTS-LRKFCR 108 (226)
T ss_dssp SSCCHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHCCCTTCCCCSBCSSTTCBHHHHHHHHHHTTCC-HHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCCcccccCCcCCCCCccHHHHHHHHHHhCCC-HHHHHH
Confidence 44444555567777778999999999999999885553 3333 223367788888888 55 888885
No 19
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=30.06 E-value=1.5e+02 Score=21.14 Aligned_cols=28 Identities=7% Similarity=0.024 Sum_probs=23.2
Q ss_pred HHHHHHhhcCchhHHHHHHHHhHHHHHH
Q psy17900 13 YFRTVFEEKGLADIVKLHMAQASQEAKK 40 (157)
Q Consensus 13 ~~~~~f~~~gL~~l~~~~~~~~~~~~~k 40 (157)
.+..+|...||+.+..|.++++.++.+.
T Consensus 26 ~~a~~~~~~gl~~~a~~f~~~a~eE~~H 53 (165)
T 1eum_A 26 QMSAWCSYHTFEGAAAFLRRHAQEEMTH 53 (165)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999887766543
No 20
>3b1j_C CP12; alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_C*
Probab=29.72 E-value=21 Score=18.79 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=9.0
Q ss_pred HHHHHhhhcchh
Q psy17900 130 KVQEFCYENMNL 141 (157)
Q Consensus 130 kvQ~~Cye~~~~ 141 (157)
.+|.||.+|..-
T Consensus 6 ~lE~yC~enPea 17 (26)
T 3b1j_C 6 FFGDYCSENPDA 17 (26)
T ss_dssp THHHHHHHCTTS
T ss_pred HHHHHHHHCCCc
Confidence 368999998643
No 21
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=29.09 E-value=1.5e+02 Score=21.68 Aligned_cols=50 Identities=14% Similarity=0.200 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q psy17900 36 QEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQ 88 (157)
Q Consensus 36 ~~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~ 88 (157)
++++|.+...+.+-++. .+.+|++..++++..+. -.+.+|..+.+.-|+.
T Consensus 7 ee~~kk~~~ii~EYf~~-~D~~Ea~~~l~eL~~p~--~~~~~V~~~I~~aldr 56 (165)
T 2rg8_A 7 RAFEKTLTPIIQEYFEH-GDTNEVAEMLRDLNLGE--MKSGVPVLAVSLALEG 56 (165)
T ss_dssp HHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHTCSG--GGGHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCcc--cHHHHHHHHHHHHHcC
Confidence 56788888888888876 57899999999976443 4567777777766665
No 22
>1unk_A Colicin E7; immunity protein, dimeric structure, RNAse active site; 1.80A {Escherichia coli} SCOP: a.28.2.1 PDB: 1mz8_A 1ayi_A 2jaz_A 2jb0_A 2jbg_A 7cei_A 1znv_A 1cei_A 1ujz_A 2erh_A
Probab=29.01 E-value=49 Score=22.40 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHH--------------cCCCHHHHHHHHHHHHhhcCCC
Q psy17900 40 KELQEQLEEQIS--------------EGASIKDIVADIREIANKHCIP 73 (157)
Q Consensus 40 kel~~~L~~~i~--------------~~~~~~~ii~~ik~~~~~~~~~ 73 (157)
.++...+.+... .+.+|..|+..||+.+.++..|
T Consensus 35 d~lv~hF~~iteHP~gsDLIfYP~~~~edsPEgIv~~iKeWRa~nG~p 82 (87)
T 1unk_A 35 DVLLEHFVKITEHPDGTDLIYYPSDNRDDSPEGIVKEIKEWRAANGKP 82 (87)
T ss_dssp HHHHHHHHHHHCCTTTTHHHHSCCSSCCCSHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhcCCCCCCCeeeeCCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 456666666552 3567899999999999998876
No 23
>1ifl_A Inovirus; helical virus; 5.00A {Enterobacteria phage ike} SCOP: h.1.4.1
Probab=29.01 E-value=99 Score=18.98 Aligned_cols=29 Identities=31% Similarity=0.555 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHhhhhccchHhHHHHHHHHHHhhHhh
Q psy17900 75 QELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTP 111 (157)
Q Consensus 75 ~e~i~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~p 111 (157)
.|+++..|..+..-+ ..--.+|.+||++.
T Consensus 22 t~~ig~~W~vvv~vv--------~a~~gIklFKKf~s 50 (53)
T 1ifl_A 22 IDLISQTWPVVTTVV--------VAGLVIRLFKKFSS 50 (53)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhheee--------echhhhhhhhhccc
Confidence 578888898887766 56678888888764
No 24
>1ifk_A Inovirus; helical virus; 5.00A {Enterobacteria phage IF1} SCOP: h.1.4.1 PDB: 1nh4_A 2c0w_A 2c0x_A
Probab=27.96 E-value=1.1e+02 Score=18.71 Aligned_cols=29 Identities=28% Similarity=0.420 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHhhhhccchHhHHHHHHHHHHhhHhh
Q psy17900 75 QELIVLIWSTVMAQVEWNKKEELVAEQALKHLKQFTP 111 (157)
Q Consensus 75 ~e~i~~iw~~lm~~v~ws~k~~~~~e~a~~~lkk~~p 111 (157)
.|+++..|..+..-+ ..--++|.+||++.
T Consensus 20 t~~ig~~W~vvv~vv--------~a~~gIKlFKKf~s 48 (51)
T 1ifk_A 20 TEMSGYAWALVVLVV--------GATVGIKLFKKFVS 48 (51)
T ss_dssp HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhhheee--------ehhhhhHHHhhhcc
Confidence 578888888887766 56678888888764
No 25
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=27.34 E-value=38 Score=23.83 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=12.6
Q ss_pred hhHHHHHHHHHHhhcC
Q psy17900 141 LMRVFQKIILLFYKRG 156 (157)
Q Consensus 141 ~mk~F~kil~~LY~~D 156 (157)
..+...+|..+||.++
T Consensus 85 ~~~~~~kIq~ILYaTe 100 (106)
T 4e61_A 85 LLRFVKKVESILYATA 100 (106)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc
Confidence 4577889999999764
No 26
>3g1g_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 2.01A {Rous sarcoma virus}
Probab=26.22 E-value=1.1e+02 Score=20.71 Aligned_cols=67 Identities=12% Similarity=0.108 Sum_probs=30.2
Q ss_pred HHHHHHHHhh----cCch-hHHHHHHHH-hHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHH
Q psy17900 11 DEYFRTVFEE----KGLA-DIVKLHMAQ-ASQEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQEL 77 (157)
Q Consensus 11 ~~~~~~~f~~----~gL~-~l~~~~~~~-~~~~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~ 77 (157)
-.+|..+|.. +++. ++=.|...+ ..+......+.-|..+-.+...+.|||..|=...+..++++..+
T Consensus 14 F~dfVdRl~kal~~eq~~~~vK~~m~~tLlvQNANpdCk~Il~~~~~~~~~~~e~Ik~~l~~~~~~~~~~~~~ 86 (87)
T 3g1g_A 14 FVDFANRLIKAVEGSDLPPSARAPVIIDCFRQKSQPDIQQLIRTAPSTLTTPGEIIKYVLDRQKTAPLTDQGI 86 (87)
T ss_dssp HHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHSCHHHHHHHHTSCTTCCSHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhcCHHHHHHHHhCCCCCCChHHHHHHHHHHhhcCCcccccc
Confidence 3445555444 5555 443443211 22222333444444444444556999999999999999888754
No 27
>1fr2_A Colicin E9 immunity protein; protein-protein complex, zinc containing enzyme, HNH-motif, immune system; 1.60A {Escherichia coli} SCOP: a.28.2.1 PDB: 1e0h_A 1emv_A 1imp_A 1imq_A 2k5x_A 2vln_A 2vlp_A 2vlq_A 2vlo_A 2gzf_A 2gzg_A 2gzi_A 2gyk_A 2gzj_A 2gze_A 1bxi_A 3gkl_C 3gjn_A
Probab=24.50 E-value=1.6e+02 Score=19.61 Aligned_cols=58 Identities=16% Similarity=0.294 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhh---------ccch-HhHHHHHHHHHHhhHhh
Q psy17900 53 GASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVE---------WNKK-EELVAEQALKHLKQFTP 111 (157)
Q Consensus 53 ~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v~---------ws~k-~~~~~e~a~~~lkk~~p 111 (157)
+.+-++.+..|+.......-++.+--.+| .-+...++ |... .+...+.+++.++.|.+
T Consensus 9 DyTe~Efi~lv~~I~~~~~~~e~e~d~ll-~~f~~~teHP~gSDLIfyP~~~~e~spE~Iv~~ik~wRa 76 (86)
T 1fr2_A 9 DYTEAEFLQLVTTICNADTSSEEELVKLV-THFAEMTEHPSGSDLIYYPKEGDDDSPSGIVNTVKQWRA 76 (86)
T ss_dssp GSBHHHHHHHHHHHHTTCSSSHHHHHHHH-HHHHHHHCCTTTTHHHHSCCTTCCCSHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhCCCCChHHHHHHH-HHHHHhcCCCCcCceeecCCCCCCCCHHHHHHHHHHHHH
Confidence 46677788888887777655665552211 11222222 3321 23447788888999976
No 28
>1r4w_A Glutathione S-transferase, mitochondrial; glutathione transferase, kappa GST, RGSTK1-1; HET: GSH; 2.50A {Rattus norvegicus} SCOP: c.47.1.13
Probab=24.48 E-value=1.2e+02 Score=22.53 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=24.4
Q ss_pred CHHHHHHHHhhcCch--hHHHHHHHHhHHHHHHHHHHHHHHHHHcC
Q psy17900 10 SDEYFRTVFEEKGLA--DIVKLHMAQASQEAKKELQEQLEEQISEG 53 (157)
Q Consensus 10 ~~~~~~~~f~~~gL~--~l~~~~~~~~~~~~~kel~~~L~~~i~~~ 53 (157)
+.+.+.+..++.||+ +.-.+...-.+...+..+++....+...|
T Consensus 134 ~~~~L~~~a~~~Gl~~~d~~~~~~~~~s~~~~~~v~~~~~~a~~~g 179 (226)
T 1r4w_A 134 ESQNILSAAEKAGMATAQAQHLLNKISTELVKSKLRETTGAACKYG 179 (226)
T ss_dssp SHHHHHHHHHHTTCCHHHHHHHHTTTTSHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCchhHHHHHHHcCCHHHHHHHHHHHHHHHHCC
Confidence 345566666666665 44455544445555556665555555444
No 29
>3omd_A Uncharacterized protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, unknown function; HET: MSE; 1.50A {Leptospirillum rubarum}
Probab=22.99 E-value=2.2e+02 Score=20.76 Aligned_cols=49 Identities=10% Similarity=0.120 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhhccch
Q psy17900 43 QEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKK 94 (157)
Q Consensus 43 ~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v~ws~k 94 (157)
-++|.+.+..+.+-.+|..||++... ...++.++ ..|..-|..--|+..
T Consensus 62 ~~~~~~~V~~~~sD~eil~wv~~~~~-~~~s~~eI--~~WN~~~~~rg~~d~ 110 (145)
T 3omd_A 62 HEKFAEAVKSRPQDQDMLAWVHSQSP-RSKNPKEV--ESFNREYESRSPDSP 110 (145)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHCG-GGGCHHHH--HHHHHHHHHCCCSSH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHCC-CCCCHHHH--HHHHHHHHhcCCCCh
Confidence 35677888888888899999999844 45666665 468887776557654
No 30
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.84 E-value=1.8e+02 Score=20.23 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q psy17900 36 QEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQ 88 (157)
Q Consensus 36 ~~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~ 88 (157)
+++++.+...|.+-+.. .+.+|++.-|+++..+ .-.+++|.......|+.
T Consensus 4 eel~kki~~ll~EY~~~-~D~~Ea~~cl~eL~~p--~f~~e~V~~~i~~alE~ 53 (129)
T 2nsz_A 4 NHLVKEIDMLLKEYLLS-GDISEAEHCLKELEVP--HFHHELVYEAIVMVLES 53 (129)
T ss_dssp CHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcC-CCHHHHHHHHHHhCCC--ccHHHHHHHHHHHHHcC
Confidence 35678888888888876 5789999999998644 34577777665555554
No 31
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=22.81 E-value=94 Score=23.29 Aligned_cols=37 Identities=22% Similarity=0.377 Sum_probs=28.7
Q ss_pred HHHHHHhhcCchhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy17900 13 YFRTVFEEKGLADIVKLHMAQASQEAKKELQEQLEEQIS 51 (157)
Q Consensus 13 ~~~~~f~~~gL~~l~~~~~~~~~~~~~kel~~~L~~~i~ 51 (157)
.|+.++++.|++.+..|.+.++.++...- ..+.+.+.
T Consensus 29 ~~A~~a~~~G~~~iA~~f~~~A~eE~~HA--~~~~~~l~ 65 (191)
T 1lko_A 29 YFGGQAKKDGFVQISDIFAETADQEREHA--KRLFKFLE 65 (191)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH--HHHHHHCC
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHH--HHHHHHHc
Confidence 57889999999999999998888766543 33555554
No 32
>1gxg_A Colicin E8 immunity protein; inhibitor, inhibitor protein of DNAse colicin E8, bacteriocin immunity, plasmid,; NMR {Escherichia coli} SCOP: a.28.2.1 PDB: 1gxh_A
Probab=21.92 E-value=1.8e+02 Score=19.29 Aligned_cols=54 Identities=13% Similarity=0.194 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhh----h---------ccch-HhHHHHHHHHHHhhHhhH
Q psy17900 53 GASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQV----E---------WNKK-EELVAEQALKHLKQFTPL 112 (157)
Q Consensus 53 ~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v----~---------ws~k-~~~~~e~a~~~lkk~~pL 112 (157)
+.+-++.+..|+.......- ..+ +..++++. + |... .+...+.+++.++.|.+-
T Consensus 9 DyTe~Efi~lv~~I~~~~~~-~e~-----~d~ll~~f~~~teHP~gSDLIfyP~~~~e~spE~Iv~~ik~wRa~ 76 (85)
T 1gxg_A 9 DYTETEFKKIIEDIINCEGD-EKK-----QDDNLEHFISVTEHPSGSDLIYYPEGNNDGSPEAVIKEIKEWRAA 76 (85)
T ss_dssp TSCHHHHHHHHHHHHHTSSS-SHH-----HHHHHHHHHHTTCCTTTTHHHHSCCTTCCSSHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhCCCC-chh-----HHHHHHHHHHhcCCCCcCceeecCCCCCCCCHHHHHHHHHHHHHH
Confidence 46667777777777766532 222 33333333 1 3321 234477888999999763
No 33
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=21.55 E-value=3.7e+02 Score=22.68 Aligned_cols=78 Identities=10% Similarity=-0.029 Sum_probs=41.2
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhhhhccchHhHHHHHHHH----HHhhHhhHHHHhcCCCc
Q psy17900 46 LEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEELVAEQALK----HLKQFTPLFGAFTDTAP 121 (157)
Q Consensus 46 L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~v~ws~k~~~~~e~a~~----~lkk~~pLL~~F~~~~~ 121 (157)
|.++.......++....+++.......|+.-.-+++..++.+.-++....++..+...+ -...|..|+.+||..+
T Consensus 111 lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g- 189 (501)
T 4g26_A 111 GARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTK- 189 (501)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCC-
Confidence 33333333445555566666655555666655555555555444333333332222211 1235888999999877
Q ss_pred HHH
Q psy17900 122 RAE 124 (157)
Q Consensus 122 ~~q 124 (157)
+.+
T Consensus 190 ~~d 192 (501)
T 4g26_A 190 NAD 192 (501)
T ss_dssp CHH
T ss_pred CHH
Confidence 554
No 34
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=21.47 E-value=1.9e+02 Score=20.88 Aligned_cols=50 Identities=18% Similarity=0.188 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHhh
Q psy17900 36 QEAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQ 88 (157)
Q Consensus 36 ~~~~kel~~~L~~~i~~~~~~~~ii~~ik~~~~~~~~~~~e~i~~iw~~lm~~ 88 (157)
+++++.+...|.+-+.. .+.+|++.-|+++..+ .-.+++|.......|+.
T Consensus 6 eel~kki~~lL~EY~~~-~D~~EA~~cl~EL~~p--~f~~e~V~~~i~~alE~ 55 (152)
T 2ion_A 6 NHLVKEIDMLLKEYLLS-GDISEAEHCLKELEVP--HFHHELVYEAIVMVLES 55 (152)
T ss_dssp CHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHTCG--GGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhCCC--cchHHHHHHHHHHHHcC
Confidence 46778888889998876 5789999999998654 44577777766666654
No 35
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A
Probab=20.61 E-value=21 Score=29.03 Aligned_cols=50 Identities=14% Similarity=0.233 Sum_probs=0.0
Q ss_pred HhhHhhHHHHhcCCCcHHHHHHHHHHHHHhhhcchh-hHHHHHHHHHHhhcC
Q psy17900 106 LKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNL-MRVFQKIILLFYKRG 156 (157)
Q Consensus 106 lkk~~pLL~~F~~~~~~~ql~LL~kvQ~~Cye~~~~-mk~F~kil~~LY~~D 156 (157)
+..+.-.+...-... +=--.=|..|+..|.++..- .++..+|+.+||.+|
T Consensus 200 l~~lk~~v~~lEkER-DFYF~KLRdIEilcQe~~~~~~~~~~~I~~ILYaTe 250 (268)
T 2r8u_A 200 VNVLKLTVEDLEKER-DFYFGKLRNIELICQENEGENDPVLQRIVDILYATD 250 (268)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcccccccHHHHHHHHHhhccc
Confidence 333444444444444 44555678899999986433 467899999999876
No 36
>2k0d_X IMME7, colicin-E7 immunity protein; toxin inhibitor; NMR {Escherichia coli}
Probab=20.57 E-value=58 Score=22.69 Aligned_cols=21 Identities=29% Similarity=0.442 Sum_probs=15.3
Q ss_pred CCCHHHHHHHHHHHHhhcCCC
Q psy17900 53 GASIKDIVADIREIANKHCIP 73 (157)
Q Consensus 53 ~~~~~~ii~~ik~~~~~~~~~ 73 (157)
+.+|+.|+..||+.+.++..|
T Consensus 76 e~sPEgIvk~IKeWRa~nGkP 96 (101)
T 2k0d_X 76 GGGPEGIVKEIKEWRAANGKP 96 (101)
T ss_dssp TSSGGGHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHcCCc
Confidence 456777888888887777665
No 37
>3q8i_A Odorant binding protein; 2.00A {Anopheles gambiae}
Probab=20.56 E-value=2e+02 Score=19.15 Aligned_cols=40 Identities=10% Similarity=0.123 Sum_probs=28.4
Q ss_pred cCCCh--HHHHHHHHHHHHhhhhcc-chHhHHHHHHHHHHhhH
Q psy17900 70 HCIPD--QELIVLIWSTVMAQVEWN-KKEELVAEQALKHLKQF 109 (157)
Q Consensus 70 ~~~~~--~e~i~~iw~~lm~~v~ws-~k~~~~~e~a~~~lkk~ 109 (157)
..+|+ .+-......|+|....+- .......+.+.+.++..
T Consensus 34 ~~~~~~~d~~~kC~~~C~~~k~g~~d~~G~~~~d~~~~~~~~~ 76 (124)
T 3q8i_A 34 SIFPANPDKELKCYAMCIAQMAGTMTKKGEISFSKTMAQIEAM 76 (124)
T ss_dssp TCCCSSCCHHHHHHHHHHHHHTTCBCTTSCBCHHHHHHHHHHH
T ss_pred CCCCCCCCcccchHHHHHHHHcCccCcCCcCCHHHHHHHHHHh
Confidence 56787 778999999999998643 44555566666665543
No 38
>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1
Probab=20.06 E-value=1.1e+02 Score=21.44 Aligned_cols=28 Identities=29% Similarity=0.426 Sum_probs=23.4
Q ss_pred HHHHHHhhcCchhHHHHHHHHhHHHHHH
Q psy17900 13 YFRTVFEEKGLADIVKLHMAQASQEAKK 40 (157)
Q Consensus 13 ~~~~~f~~~gL~~l~~~~~~~~~~~~~k 40 (157)
.|+..+++.|++.+..|.++++.++...
T Consensus 29 ~~A~~a~~~g~~~~a~~f~~~A~eE~~H 56 (144)
T 1j30_A 29 YFAKRADEEGYPEIAGLLRSIAEGETAH 56 (144)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999887776543
Done!