RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17900
         (157 letters)



>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor eIF4G
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 72.2 bits (177), Expect = 9e-18
 Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 4/117 (3%)

Query: 38  AKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEEL 97
             +EL  QLE+ + EG+S + +   I    ++  I    L+  + + V       +    
Sbjct: 3   PSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAVCYSAIIFETPL- 61

Query: 98  VAEQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCYENMNLMRVFQKIILLFYK 154
                +  LK    L   +     + EL  +  +Q           + +      Y 
Sbjct: 62  --RVDVAVLKARAKLLQKYLCD-EQKELQALYALQALVVTLEQPPNLLRMFFDALYD 115


>d1paqa_ a.118.1.14 (A:) Translation initiation factor eIF-2b
           epsilon {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 161

 Score = 56.1 bits (135), Expect = 3e-11
 Identities = 13/122 (10%), Positives = 39/122 (31%), Gaps = 5/122 (4%)

Query: 37  EAKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLIWSTVMAQVEWNKKEE 96
           + +KE    +E  +     +   + ++  +     +   E+ +   + ++ +V      +
Sbjct: 1   DFEKEGIATVERAMENNHDLDTALLELNTLRMSMNVTYHEVRIATITALLRRVYHFIATQ 60

Query: 97  LVA--EQALKHLKQFTPLFGAFTDTAPRAELALMLKVQEFCY--ENMNLMRVFQKIILLF 152
            +   +  +K   Q+  LF           + LM  + E            +    ++  
Sbjct: 61  TLGPKDAVVKVFNQWGLLFKRQAFD-EEEYIDLMNIIMEKIVEQSFDKPDLILFSALVSL 119

Query: 153 YK 154
           Y 
Sbjct: 120 YD 121


>d1tlja_ d.282.1.1 (A:) Hypothetical protein SSo0622 {Sulfolobus
          solfataricus [TaxId: 2287]}
          Length = 189

 Score = 24.4 bits (53), Expect = 5.8
 Identities = 4/35 (11%), Positives = 12/35 (34%)

Query: 36 QEAKKELQEQLEEQISEGASIKDIVADIREIANKH 70
          +E +++   ++      G    DI+  +       
Sbjct: 4  EELREKALNKIYHDKEIGYLDPDILGFLLAFYRNR 38


>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni
           [TaxId: 197]}
          Length = 165

 Score = 24.2 bits (52), Expect = 6.3
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 25  DIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIAN 68
            +V+  +          LQ  + EQ  E A  + IV  I+ I  
Sbjct: 103 TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGE 146


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.134    0.380 

Gapped
Lambda     K      H
   0.267   0.0463    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 575,080
Number of extensions: 25150
Number of successful extensions: 114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 21
Length of query: 157
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,336,656
Effective search space: 105595824
Effective search space used: 105595824
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.3 bits)