BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17901
         (218 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1T9F|A Chain A, Structural Genomics Of Caenorhabditis Elegans: Structure
           Of A Protein With Unknown Function
          Length = 187

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/181 (37%), Positives = 82/181 (45%), Gaps = 39/181 (21%)

Query: 8   ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKAPTG 67
             +  +VTC SV+K +N +   RLHSHDVKY            +  +D+NSHW I     
Sbjct: 1   GSDEDFVTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALN 60

Query: 68  KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGA-QEVSA---------------- 110
             C RG+ IKC D IRL H TT   LHSHHF++PLS   QEVSA                
Sbjct: 61  AKCNRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVI 120

Query: 111 ---------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIF 149
                                YLS + Q +GRPI GQ E+V           WK  EGI+
Sbjct: 121 CNGDEWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVVGTDSITGGSA-WKVAEGIY 179

Query: 150 I 150
           I
Sbjct: 180 I 180


>pdb|3MAL|A Chain A, Crystal Structure Of The Sdf2-Like Protein From
           Arabidopsis
 pdb|3MAL|B Chain B, Crystal Structure Of The Sdf2-Like Protein From
           Arabidopsis
          Length = 199

 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 56/107 (52%)

Query: 14  VTCGSVVKLMNVDYRVRLHSHDVKYXXXXXXXXXXXXEVKEDVNSHWIIKAPTGKTCKRG 73
           +T GS +KLM+   + RLHSHDV Y                D NS+WI+K   G T K+G
Sbjct: 18  ITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQG 77

Query: 74  EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYG 120
           + +K    IRL H  T K LHSH  +SP+SG  EVS +   T    G
Sbjct: 78  DAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTG 124



 Score = 32.0 bits (71), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 28/144 (19%)

Query: 9   RNNQYVTCGSVVKLMNVDYRVRLHSH-DVKYXXXXXXXXXXXXEVKEDVNSHW-IIKAPT 66
           +    V  G+ ++L ++  R  LHSH                 +   D   HW +I   +
Sbjct: 75  KQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGS 134

Query: 67  GKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQ 126
           GKT K+      +  +RL H  T+  LHSH                    + Y R   GQ
Sbjct: 135 GKTWKQ------DQRVRLQHIDTSGYLHSH-------------------DKKYQRIAGGQ 169

Query: 127 YEIVTVSWPDHNPVLWKTMEGIFI 150
            E+  +     + + W   EG+++
Sbjct: 170 QEVCGIREKKADNI-WLAAEGVYL 192


>pdb|2Q9T|A Chain A, High-Resolution Structure Of The Ding Protein From
           Pseudomonas Fluorescens
          Length = 379

 Score = 30.8 bits (68), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 79  NDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPI 123
           ND  +     TNKN+H     S LS A E+S Y SA + T+G+ I
Sbjct: 43  NDYTKFQAGVTNKNVHWAGSDSKLS-ATELSTYASAKQPTWGKLI 86


>pdb|4F1U|A Chain A, Subatomic Resolution Structure Of A High Affinity
           Periplasmic Phosphate-Binding Protein (Pfluding) Bound
           With Phosphate At Ph 4.5
 pdb|4F1V|A Chain A, Subatomic Resolution Structure Of A High Affinity
           Periplasmic Phosphate-Binding Protein (Pfluding) Bound
           With Phosphate At Ph 8.5
 pdb|4F18|A Chain A, Subatomic Resolution Structure Of A High Affinity
           Periplasmic Phosphate-Binding Protein (Pfluding) Bound
           With Arsenate At Ph 8.5
 pdb|4F19|A Chain A, Subatomic Resolution Structure Of A High Affinity
           Periplasmic Phosphate-Binding Protein (Pfluding) Bound
           With Arsenate At Ph 4.5
          Length = 381

 Score = 30.8 bits (68), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 79  NDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPI 123
           ND  +     TNKN+H     S LS A E+S Y SA + T+G+ I
Sbjct: 43  NDYTKFQAGVTNKNVHWAGSDSKLS-ATELSTYASAKQPTWGKLI 86


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.131    0.406 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,121,443
Number of Sequences: 62578
Number of extensions: 180892
Number of successful extensions: 288
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 278
Number of HSP's gapped (non-prelim): 8
length of query: 218
length of database: 14,973,337
effective HSP length: 95
effective length of query: 123
effective length of database: 9,028,427
effective search space: 1110496521
effective search space used: 1110496521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)