BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17901
(218 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9DCT5|SDF2_MOUSE Stromal cell-derived factor 2 OS=Mus musculus GN=Sdf2 PE=2 SV=1
Length = 211
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/184 (48%), Positives = 107/184 (58%), Gaps = 38/184 (20%)
Query: 8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTG 67
A N VTCGSVVKL+N + VRLHSHDV+YG+GSGQQSVTG +D NS+W I+ T
Sbjct: 18 ASNMAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTA 77
Query: 68 KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY---------------- 111
C+RG PIKC IRLTH T +NLHSHHF+SPLSG QEVSA+
Sbjct: 78 TVCERGTPIKCGQPIRLTHINTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC 137
Query: 112 ---------------------LSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFI 150
LS T + YGRPISGQ E+ ++ P N WK MEGIF+
Sbjct: 138 NGPYWVRDGEVRFKHSSTDVLLSVTGEQYGRPISGQKEVHGMAQPSQNN-YWKAMEGIFM 196
Query: 151 HPSD 154
PS+
Sbjct: 197 KPSE 200
>sp|Q3SZ45|SDF2_BOVIN Stromal cell-derived factor 2 OS=Bos taurus GN=SDF2 PE=2 SV=1
Length = 211
Score = 167 bits (422), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 107/184 (58%), Gaps = 38/184 (20%)
Query: 8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTG 67
+ N VTCGSVVKL+N + VRLHSHDV+YG+GSGQQSVTG +D NS+W I+ T
Sbjct: 18 SSNLAVVTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKTA 77
Query: 68 KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY---------------- 111
C+RG PI+C IRLTH T +NLHSHHF+SPLSG QEVSA+
Sbjct: 78 TVCERGTPIRCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLC 137
Query: 112 ---------------------LSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFI 150
LS T + YGRPISGQ E+ ++ P N WK MEGIF+
Sbjct: 138 NGPYWVRDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNN-YWKAMEGIFM 196
Query: 151 HPSD 154
PS+
Sbjct: 197 KPSE 200
>sp|Q99470|SDF2_HUMAN Stromal cell-derived factor 2 OS=Homo sapiens GN=SDF2 PE=1 SV=2
Length = 211
Score = 166 bits (419), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 87/178 (48%), Positives = 105/178 (58%), Gaps = 38/178 (21%)
Query: 14 VTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRG 73
VTCGSVVKL+N + VRLHSHDV+YG+GSGQQSVTG +D NS+W I+ + C+RG
Sbjct: 24 VTCGSVVKLLNTRHNVRLHSHDVRYGSGSGQQSVTGVTSVDDSNSYWRIRGKSATVCERG 83
Query: 74 EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY---------------------- 111
PIKC IRLTH T +NLHSHHF+SPLSG QEVSA+
Sbjct: 84 TPIKCGQPIRLTHVNTGRNLHSHHFTSPLSGNQEVSAFGEEGEGDYLDDWTVLCNGPYWV 143
Query: 112 ---------------LSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFIHPSD 154
LS T + YGRPISGQ E+ ++ P N WK MEGIF+ PS+
Sbjct: 144 RDGEVRFKHSSTEVLLSVTGEQYGRPISGQKEVHGMAQPSQNN-YWKAMEGIFMKPSE 200
>sp|Q3T083|SDF2L_BOVIN Stromal cell-derived factor 2-like protein 1 OS=Bos taurus
GN=SDF2L1 PE=2 SV=1
Length = 221
Score = 161 bits (407), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 101/185 (54%), Gaps = 40/185 (21%)
Query: 14 VTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRG 73
VTCGSV+KL N +RVRLHSHD+KYG+GSGQQSVTG E +D NS+W I+ T C RG
Sbjct: 36 VTCGSVLKLFNTQHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIRGGTEGECPRG 95
Query: 74 EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA----------------------- 110
P++C +RLTH T KNLH+HHF SPL+ QEVSA
Sbjct: 96 SPVRCGQAVRLTHVLTGKNLHTHHFPSPLTNNQEVSAFGEDGEGDDLDLWTVRCSGQHWE 155
Query: 111 --------------YLSATRQTYGRPISGQYEI-VTVSWPDHNPVLWKTMEGIFIHPSDP 155
+LS T + YG PI GQ+E+ S HN WK MEGIFI PS
Sbjct: 156 REAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMASASAHNK--WKAMEGIFIKPSPE 213
Query: 156 VANSH 160
H
Sbjct: 214 APGGH 218
>sp|Q9HCN8|SDF2L_HUMAN Stromal cell-derived factor 2-like protein 1 OS=Homo sapiens
GN=SDF2L1 PE=1 SV=2
Length = 221
Score = 159 bits (403), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 86/186 (46%), Positives = 106/186 (56%), Gaps = 41/186 (22%)
Query: 12 QYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCK 71
+ VTCGSV+KL+N +RVRLHSHD+KYG+GSGQQSVTG E +D NS+W I+ + C
Sbjct: 34 ELVTCGSVLKLLNTHHRVRLHSHDIKYGSGSGQQSVTGVEASDDANSYWRIRGGSEGGCP 93
Query: 72 RGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA--------------------- 110
RG P++C +RLTH T KNLH+HHF SPLS QEVSA
Sbjct: 94 RGSPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRCSGQH 153
Query: 111 ----------------YLSATRQTYGRPISGQYEIVTV-SWPDHNPVLWKTMEGIFIHPS 153
+LS T + YG PI GQ+E+ + S HN WK MEGIFI PS
Sbjct: 154 WEREAAVRFQHVGTSVFLSVTGEQYGSPIRGQHEVHGMPSANTHN--TWKAMEGIFIKPS 211
Query: 154 -DPVAN 158
+P A
Sbjct: 212 VEPSAG 217
>sp|Q9ESP1|SDF2L_MOUSE Stromal cell-derived factor 2-like protein 1 OS=Mus musculus
GN=Sdf2l1 PE=2 SV=2
Length = 221
Score = 156 bits (395), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 83/186 (44%), Positives = 104/186 (55%), Gaps = 40/186 (21%)
Query: 13 YVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKR 72
VTCGSV+KL+N ++VRLHSHD+KYG+GSGQQSVTG E +D NS+W I+ + C R
Sbjct: 35 LVTCGSVLKLLNTHHKVRLHSHDIKYGSGSGQQSVTGVEESDDANSYWRIRGGSEGGCPR 94
Query: 73 GEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA---------------------- 110
G P++C +RLTH T KNLH+HHF SPLS QEVSA
Sbjct: 95 GLPVRCGQAVRLTHVLTGKNLHTHHFPSPLSNNQEVSAFGEDGEGDDLDLWTVRCSGQHW 154
Query: 111 ---------------YLSATRQTYGRPISGQYEIVTV-SWPDHNPVLWKTMEGIFIHPSD 154
+LS T + YG PI GQ+E+ + S HN WK MEGIFI P
Sbjct: 155 EREASVRFQHVGTSVFLSVTGEQYGNPIRGQHEVHGMPSANAHN--TWKAMEGIFIKPGA 212
Query: 155 PVANSH 160
++ H
Sbjct: 213 DLSTGH 218
>sp|Q93ZE8|SDF2_ARATH Stromal cell-derived factor 2-like protein OS=Arabidopsis thaliana
GN=At2g25110 PE=1 SV=1
Length = 218
Score = 101 bits (251), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/107 (50%), Positives = 67/107 (62%)
Query: 14 VTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRG 73
+T GS +KLM+ + RLHSHDV YG+GSGQQSVTG D NS+WI+K G T K+G
Sbjct: 37 ITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPGTTEKQG 96
Query: 74 EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYG 120
+ +K IRL H T K LHSH +SP+SG EVS + T G
Sbjct: 97 DAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTG 143
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 10/101 (9%)
Query: 14 VTCGSVVKLMNVDYRVRLHSH-DVKYGTGSGQQSVTGTEVKEDVNSHW-IIKAPTGKTCK 71
V G+ ++L ++ R LHSH +G+ + S G + D HW +I +GKT K
Sbjct: 99 VKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLIIEGSGKTWK 158
Query: 72 RGEPIKCNDIIRLTHTTTNKNLHSHH--FSSPLSGAQEVSA 110
+ + +RL H T+ LHSH + G QEV
Sbjct: 159 Q------DQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCG 193
>sp|Q54P23|SDF2_DICDI Stromal cell-derived factor 2-like protein OS=Dictyostelium
discoideum GN=DDB_G0284847 PE=3 SV=1
Length = 212
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 14 VTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQ---QSVTGTEVKEDVNSHWIIKAPTGKTC 70
VT GS+VKL +V RLHSH V YG+ G QSVTG +D NS W+IK P G
Sbjct: 32 VTYGSMVKLAHVPTNFRLHSHKVSYGSSGGGSGQQSVTGFPENDDTNSLWVIKGPHGNRV 91
Query: 71 KRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAY 111
+G +K DIIRL H+ T KNLHSH SPL+ EVS +
Sbjct: 92 LQGTVVKNGDIIRLVHSNTKKNLHSHLAVSPLTKQNEVSCF 132
Score = 35.8 bits (81), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)
Query: 17 GSVVKLMNVDYRVRLHSH-DVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEP 75
G +++L++ + + LHSH V T + S G + D +WI++ +GK RG+
Sbjct: 100 GDIIRLVHSNTKKNLHSHLAVSPLTKQNEVSCFGENGEGDTGDNWIVETESGKEWMRGQ- 158
Query: 76 IKCNDIIRLTHTTTNKNLH---SHHFSSPLSGAQEVSAYLSATRQTYGRPISGQY 127
++R H T L S + +P+ G E+S S T R G Y
Sbjct: 159 -----VVRFKHADTKTYLQAIESAKYQNPIPGQIEISGGKSKNEDTKWRTEEGIY 208
>sp|Q8BGQ4|POMT2_MOUSE Protein O-mannosyl-transferase 2 OS=Mus musculus GN=Pomt2 PE=1 SV=1
Length = 820
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 59/109 (54%), Gaps = 10/109 (9%)
Query: 12 QYVTCGSVVKLMNVDYRV-RLHSHDVKY--GTGSGQQSVTGTEVKEDVNSHWIIKAPTGK 68
+++ GSV+ + N+ + LHSH Y G G+ QQ VT T + +D N+ WIIK
Sbjct: 405 EHLAYGSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVT-TYLHKDYNNLWIIKKYNAN 463
Query: 69 TCKRG-----EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQ-EVSAY 111
T E ++ DIIRL H T +NLHSH+ +PL+ +V+ Y
Sbjct: 464 TDPLDPSFPVEFVRHGDIIRLEHKETTRNLHSHYHEAPLTRKHYQVTGY 512
>sp|Q9UKY4|POMT2_HUMAN Protein O-mannosyl-transferase 2 OS=Homo sapiens GN=POMT2 PE=1 SV=2
Length = 750
Score = 56.6 bits (135), Expect = 1e-07, Method: Composition-based stats.
Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 18/113 (15%)
Query: 12 QYVTCGSVVKLMNVDYRV-RLHSHDVKY--GTGSGQQSVTGTEVKEDVNSHWIIKAPTGK 68
+++ GSV+ + N+ + LHSH Y G G+ QQ VT T + +D N+ WIIK K
Sbjct: 335 EHLAYGSVITVKNLRMAIGYLHSHRHLYPEGIGARQQQVT-TYLHKDYNNLWIIK----K 389
Query: 69 TCKRGEP---------IKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQ-EVSAY 111
+P ++ DIIRL H T++NLHSH+ +P++ +V+ Y
Sbjct: 390 HNTNSDPLDPSFPVEFVRHGDIIRLEHKETSRNLHSHYHEAPMTRKHYQVTGY 442
>sp|Q9W5D4|POMT2_DROME Protein O-mannosyl-transferase 2 OS=Drosophila melanogaster GN=tw
PE=2 SV=1
Length = 765
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/90 (37%), Positives = 50/90 (55%), Gaps = 14/90 (15%)
Query: 31 LHSHDVKYGTGSG--QQSVTGTEVKEDVNSHWIIKA------PTGKTCKRGEPIKCNDII 82
LHSH Y GSG QQ VT T +D N+ W+I+ P GK + ++ D++
Sbjct: 339 LHSHHHLYPKGSGARQQQVT-TYTHKDENNKWLIRPHNKPGPPKGKV----QILRHGDLV 393
Query: 83 RLTHTTTNKNLHSHHFSSPLSGAQ-EVSAY 111
RLTH T +NLHSH+ +P++ +V+ Y
Sbjct: 394 RLTHMATRRNLHSHNEPAPMTKKHLQVTGY 423
>sp|Q9C100|PMT2_SCHPO Dolichyl-phosphate-mannose--protein mannosyltransferase 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=ogm2 PE=3 SV=1
Length = 739
Score = 55.1 bits (131), Expect = 4e-07, Method: Composition-based stats.
Identities = 35/87 (40%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 31 LHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGE-----PIKCNDIIRLT 85
LHSH Y GS QQ VTG K D N+ W+ G E PI ++RL
Sbjct: 353 LHSHVQTYPEGSEQQQVTGYHHK-DGNNEWMFVPTHGVAYNYEENDPMNPILNGSVVRLI 411
Query: 86 HTTTNKNLHSHHFSSPLSGAQ-EVSAY 111
H TN+NLH+H +PL+ EVS Y
Sbjct: 412 HPFTNRNLHTHKIPAPLNKRMYEVSGY 438
>sp|Q9Y6A1|POMT1_HUMAN Protein O-mannosyl-transferase 1 OS=Homo sapiens GN=POMT1 PE=1 SV=3
Length = 747
Score = 53.9 bits (128), Expect = 9e-07, Method: Composition-based stats.
Identities = 42/113 (37%), Positives = 58/113 (51%), Gaps = 15/113 (13%)
Query: 14 VTCGSVVKLMNVDYR---VRLHSHDVKY------GTGSG-QQSVTGTEVKEDVNSHWIIK 63
V GS V L NV + LHSH Y G GS QQ VT K DVN+ WI+K
Sbjct: 321 VAFGSQVTLRNVFGKPVPCWLHSHQDTYPMIYENGRGSSHQQQVTCYPFK-DVNNWWIVK 379
Query: 64 APTGK---TCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLS-GAQEVSAYL 112
P P++ D+++L H T ++L++H ++PLS +QEVS Y+
Sbjct: 380 DPRRHQLVVSSPPRPVRHGDMVQLVHGMTTRSLNTHDVAAPLSPHSQEVSCYI 432
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.126 0.360
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,973,890
Number of Sequences: 539616
Number of extensions: 4691738
Number of successful extensions: 338544
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 4123
Number of HSP's successfully gapped in prelim test: 372
Number of HSP's that attempted gapping in prelim test: 140410
Number of HSP's gapped (non-prelim): 93558
length of query: 218
length of database: 191,569,459
effective HSP length: 113
effective length of query: 105
effective length of database: 130,592,851
effective search space: 13712249355
effective search space used: 13712249355
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 59 (27.3 bits)