Query psy17901
Match_columns 218
No_of_seqs 187 out of 987
Neff 5.4
Searched_HMMs 46136
Date Fri Aug 16 17:02:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17901.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17901hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3358|consensus 100.0 8.1E-44 1.8E-48 298.3 10.5 141 12-153 24-201 (211)
2 KOG3359|consensus 100.0 3.2E-38 6.9E-43 308.0 14.2 149 4-153 297-505 (723)
3 COG1928 PMT1 Dolichyl-phosphat 100.0 2.4E-33 5.1E-38 273.5 12.4 140 11-153 298-485 (699)
4 PF02815 MIR: MIR domain; Int 99.9 2.3E-27 5E-32 199.3 5.1 118 29-150 1-187 (190)
5 KOG3359|consensus 99.9 1E-22 2.2E-27 199.7 10.8 103 8-110 375-483 (723)
6 KOG3358|consensus 99.9 9.8E-22 2.1E-26 165.4 9.7 95 8-110 82-180 (211)
7 COG1928 PMT1 Dolichyl-phosphat 99.8 1E-19 2.2E-24 178.4 9.8 106 8-113 357-467 (699)
8 PF02815 MIR: MIR domain; Int 99.8 6.1E-19 1.3E-23 148.2 8.4 103 10-113 61-174 (190)
9 smart00472 MIR Domain in ryano 99.7 1.1E-16 2.3E-21 110.2 6.1 54 11-64 1-56 (57)
10 smart00472 MIR Domain in ryano 99.5 2.1E-14 4.6E-19 98.7 6.3 54 74-146 2-56 (57)
11 PF08709 Ins145_P3_rec: Inosit 98.8 1.4E-08 3.1E-13 87.7 8.2 85 11-96 95-180 (214)
12 PF08709 Ins145_P3_rec: Inosit 97.4 0.0014 3.1E-08 56.7 9.6 83 11-99 3-121 (214)
13 PF04601 DUF569: Protein of un 96.1 0.031 6.7E-07 46.2 7.7 71 14-103 4-74 (142)
14 KOG3533|consensus 95.2 0.063 1.4E-06 57.7 7.7 125 9-143 176-307 (2706)
15 KOG3533|consensus 95.1 0.014 3E-07 62.3 2.6 97 11-110 117-218 (2706)
16 KOG2243|consensus 92.8 0.12 2.7E-06 55.8 4.3 86 9-96 171-310 (5019)
17 PF04601 DUF569: Protein of un 92.4 0.74 1.6E-05 38.0 7.6 67 17-98 51-118 (142)
18 PF14200 RicinB_lectin_2: Rici 89.9 2 4.3E-05 32.2 7.3 65 17-96 14-78 (105)
19 KOG2243|consensus 84.4 1.3 2.8E-05 48.6 4.4 83 11-96 111-196 (5019)
20 KOG3743|consensus 76.5 6 0.00013 39.3 5.9 77 12-93 315-397 (622)
21 PF00167 FGF: Fibroblast growt 57.2 59 0.0013 25.2 7.0 50 27-96 9-58 (122)
22 PF09270 BTD: Beta-trefoil DNA 45.8 62 0.0013 27.3 5.7 74 14-93 3-87 (158)
23 smart00791 Agglutinin Amaranth 44.8 45 0.00097 27.6 4.6 42 58-99 68-115 (139)
24 cd00058 FGF Acidic and basic f 35.8 70 0.0015 25.3 4.4 39 47-97 19-57 (123)
25 KOG2572|consensus 35.6 17 0.00037 35.2 1.0 6 163-168 447-452 (498)
26 PF06375 BLVR: Bovine leukaemi 31.5 15 0.00032 30.8 -0.2 8 141-148 48-55 (154)
27 cd00257 Fascin Fascin-like dom 31.4 2.2E+02 0.0049 21.3 7.1 57 19-96 3-59 (119)
28 TIGR02334 prpF probable AcnD-a 29.8 1.2E+02 0.0026 29.2 5.5 56 80-135 129-212 (390)
29 smart00791 Agglutinin Amaranth 28.1 53 0.0012 27.2 2.5 25 11-35 88-113 (139)
30 KOG4364|consensus 27.3 2E+02 0.0044 29.8 6.9 6 208-213 334-339 (811)
31 PF09270 BTD: Beta-trefoil DNA 26.1 50 0.0011 27.8 2.1 19 12-30 68-86 (158)
32 KOG0345|consensus 23.5 2E+02 0.0043 28.8 5.9 8 58-65 326-333 (567)
33 smart00442 FGF Acidic and basi 22.9 1.4E+02 0.0031 23.6 4.1 52 26-97 10-61 (126)
34 KOG0310|consensus 21.6 6.6E+02 0.014 24.9 8.9 48 59-110 188-243 (487)
No 1
>KOG3358|consensus
Probab=100.00 E-value=8.1e-44 Score=298.34 Aligned_cols=141 Identities=65% Similarity=1.058 Sum_probs=136.9
Q ss_pred ceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCcc
Q psy17901 12 QYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNK 91 (218)
Q Consensus 12 ~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~ 91 (218)
..|+|||+|+|.|..++..||||+++|++||+||.|||+...+|.|++|+|.+..+..|+.|++|+||+.|||.|+.|++
T Consensus 24 ~~VTcgSvlKlln~~~~~RLHSHDVkYGSgSGQQSVTgv~~~dD~NSyW~Ik~~~~~~c~rG~pikcG~~iRL~H~~Tgk 103 (211)
T KOG3358|consen 24 DVVTCGSVLKLLNTKHKFRLHSHDVKYGSGSGQQSVTGVEGVDDSNSYWRIKPVSGTTCERGDPIKCGQTIRLTHLKTGK 103 (211)
T ss_pred ceEEhhhhHHhhccccceeeeccccCccCCCCcceeecccccccCcceEEEecCCCCcccCCCccccCCeEEEEEeeccc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCCCCCCCCceeEE-------------------------------------EEecccccCCCCCCceeEEEeecC
Q psy17901 92 NLHSHHFSSPLSGAQEVSA-------------------------------------YLSATRQTYGRPISGQYEIVTVSW 134 (218)
Q Consensus 92 ~LhSH~~~sPis~qqEVSc-------------------------------------YL~~sg~~~~~~i~gQ~EV~c~~~ 134 (218)
+||||.+.+|+|++||||| ||+++|.+|++||.||+||+++..
T Consensus 104 nLHSHhf~sPlSgnqEVSafG~dgegDtgD~Wtvic~g~~W~r~~~vrl~Hi~T~~yLs~sg~qygrpi~GQ~EV~G~~~ 183 (211)
T KOG3358|consen 104 NLHSHHFTSPLSGNQEVSAFGEDGEGDTGDHWTVICNGKTWKRDARVRLQHIDTSVYLSVSGEQYGRPISGQQEVVGMRS 183 (211)
T ss_pred chhhcccCCCCCCCeeEEeecccCCCCcccceEEEeCCccccccceEEEEEeccceeEEecccccCCccCCceEEecccC
Confidence 9999999999999999999 788999999999999999999999
Q ss_pred CCCCCcceEEeeeeecCCC
Q psy17901 135 PDHNPVLWKTMEGIFIHPS 153 (218)
Q Consensus 135 ~~d~~t~W~Veegv~~~~~ 153 (218)
+...+ +|.++||+|++++
T Consensus 184 ~~~~n-~WkaaEGifikp~ 201 (211)
T KOG3358|consen 184 PKAGN-IWKAAEGIFIKPS 201 (211)
T ss_pred CCCCC-ceeeccceEecCc
Confidence 98777 9999999999987
No 2
>KOG3359|consensus
Probab=100.00 E-value=3.2e-38 Score=308.03 Aligned_cols=149 Identities=33% Similarity=0.467 Sum_probs=129.4
Q ss_pred cccccCC-------CceeecCCEEEEEecCC-CCceeccccCCCCC-CCceeEEEEccCCCCCCceEEEc-CCCCC---C
Q psy17901 4 FKSKARN-------NQYVTCGSVVKLMNVDY-RVRLHSHDVKYGTG-SGQQSVTGTEVKEDVNSHWIIKA-PTGKT---C 70 (218)
Q Consensus 4 ~~~~~~~-------~~~V~~Gs~IrL~H~~T-g~~LHSH~~~yp~g-S~qQeVT~y~~~~D~Nd~WiIe~-~~~~~---~ 70 (218)
||+++.. +..|.+||+|+|+|..| |+|||||.+.||.| |.|||||||++. |.||.|+|+. ....+ .
T Consensus 297 FQa~L~G~~i~~~~p~~v~~GS~Itir~~~~~~gyLHSH~~~YP~g~S~QQQVT~Y~~~-D~NN~Wli~~~~~~~d~~~~ 375 (723)
T KOG3359|consen 297 FQASLKGNSITNGVPRDVAYGSTITLRHHKTGGGYLHSHLHTYPEGYSEQQQVTGYPHK-DANNEWLIELNPHPSDPVNA 375 (723)
T ss_pred HHHHhCCCCCCCCCcceeeeccEEEEEecCCcceeeecccccCCCCcCccceEEeeccc-CCCceEEEecCCCCcccccC
Confidence 6666533 78999999999999988 58999999999999 999999999987 5778999994 22211 3
Q ss_pred CCCCeeeeCCEEEEEecCCcceeeecCCCCCCC-CCceeEE---------------------------------------
Q psy17901 71 KRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLS-GAQEVSA--------------------------------------- 110 (218)
Q Consensus 71 ~~~~~V~~gd~IRL~H~~T~~~LhSH~~~sPis-~qqEVSc--------------------------------------- 110 (218)
.+.++|++||.|||+|+.||++||||++++|+| +|+||||
T Consensus 376 ~~~~~v~~G~~vrL~H~~T~r~LhsHdv~apvs~~~~EvS~yg~~~~~gd~~d~w~veIv~~~~~~~~~~i~tl~t~fRl 455 (723)
T KOG3359|consen 376 TQIEPVRHGDIVRLRHKMTGRNLHSHDVAAPVSPQQYEVSCYGDSGFEGDANDLWRVEIVKKKPNEDQERIKTLTTEFRL 455 (723)
T ss_pred CcceeccCCcEEEEEecccCcccccCCCCCCCCCCceEEEEEeccccccCccccEEEEEecCCCCCCCceEEEeeeEEEE
Confidence 446789999999999999999999999999999 7899999
Q ss_pred -------EEecccccCCCCCCceeEEEeecCCCCCCcceEEeeeeecCCC
Q psy17901 111 -------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFIHPS 153 (218)
Q Consensus 111 -------YL~~sg~~~~~~i~gQ~EV~c~~~~~d~~t~W~Veegv~~~~~ 153 (218)
||.++|..+|+|+|+|+||+|+++..+.+|+|+||||++...+
T Consensus 456 ~h~~t~c~L~ss~~~LP~WGf~Q~EV~c~~~~~~~~T~WnVEe~~n~~l~ 505 (723)
T KOG3359|consen 456 IHVLTGCYLKSSGKKLPEWGFEQQEVVCAKNPRDKSTTWNVEEHENPRLP 505 (723)
T ss_pred EEcccceEEccCCCcCCcccccceEEecccCCcCCCceEEEecccCCcCc
Confidence 4556777889999999999999998888889999999987544
No 3
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-33 Score=273.51 Aligned_cols=140 Identities=30% Similarity=0.401 Sum_probs=123.8
Q ss_pred CceeecC-CEEEEEecCCC-CceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecC
Q psy17901 11 NQYVTCG-SVVKLMNVDYR-VRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTT 88 (218)
Q Consensus 11 ~~~V~~G-s~IrL~H~~Tg-~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~ 88 (218)
+..+.+| |+|+|+|..|+ +|||||.+.||.||.|||||+|++. |+||.|+|+..+ .+..+..+|.+|+.|||.|..
T Consensus 298 ~~~~~~g~S~itirh~~t~g~~LHSh~~~YP~gs~qqqvt~y~~~-d~NN~W~~e~~~-~~~~~~~~l~~G~~vrL~H~~ 375 (699)
T COG1928 298 SRDPAYGSSTITIRHAGTGGGYLHSHNQLYPEGSEQQQVTGYGHK-DANNEWLIELSD-ENATQIEPLKDGQSVRLRHKY 375 (699)
T ss_pred ceeeeeeeeEEEEeccCCccchhhcccCCCCCCcccceeeccccc-ccccceeeeecc-cccccceeccCCcEEEEEEee
Confidence 4578888 99999999995 8999999999999999999999987 577899999554 344566789999999999999
Q ss_pred CcceeeecCCCCCCC-CCceeEE---------------------------------------------EEecccccCCCC
Q psy17901 89 TNKNLHSHHFSSPLS-GAQEVSA---------------------------------------------YLSATRQTYGRP 122 (218)
Q Consensus 89 T~~~LhSH~~~sPis-~qqEVSc---------------------------------------------YL~~sg~~~~~~ 122 (218)
||++||+|+.++|+| +|.|||| ||.+++..+|+|
T Consensus 376 T~~~Lh~H~~~~pvS~~~~EvS~yg~~~~gd~~d~w~i~i~~~~~~~~~~~i~pl~t~fRl~h~~~~cyL~s~~~~lP~W 455 (699)
T COG1928 376 TGKNLHFHDVKPPVSGNQYEVSGYGDSFEGDEKDDWIIEIVKDEANEDQERIHPLETKFRLYHVLTGCYLASHDLKLPEW 455 (699)
T ss_pred ccceeecCCCCCCCCCCceeeeeccccccCCcccceeeEeeeccCCCccceeeecccceeeeecccceeeccCCCCCCCc
Confidence 999999999999999 7899999 455566778999
Q ss_pred CCceeEEEeecCCCCCCcceEEeeeeecCCC
Q psy17901 123 ISGQYEIVTVSWPDHNPVLWKTMEGIFIHPS 153 (218)
Q Consensus 123 i~gQ~EV~c~~~~~d~~t~W~Veegv~~~~~ 153 (218)
+++|+||+|..+ .+.+|+|+||++++...+
T Consensus 456 gf~q~EV~c~~~-~~~~T~W~ie~~~n~~l~ 485 (699)
T COG1928 456 GFSQREVLCAKD-RDPSTTWNIEENVNDRLP 485 (699)
T ss_pred ccccceeEeeec-cCCcceeeeecccCccCC
Confidence 999999999999 777789999999998655
No 4
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=99.94 E-value=2.3e-27 Score=199.26 Aligned_cols=118 Identities=35% Similarity=0.437 Sum_probs=93.5
Q ss_pred CceeccccCCCCCCCceeEEEEccCCCCCC------------------ceEEEcCCCCCCCCCCeeeeCCEEEEEecCCc
Q psy17901 29 VRLHSHDVKYGTGSGQQSVTGTEVKEDVNS------------------HWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTN 90 (218)
Q Consensus 29 ~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd------------------~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~ 90 (218)
+|||||++.||.+|.|||||||++.+++|. +|+|+.+.... ..+..|..|+.|||+|+.||
T Consensus 1 g~Lhshd~~y~~~s~qqqvt~~~~~d~nn~~~~~~~~~~~~~~~~~~slW~IE~~~~~~-~~g~~v~~g~~iRL~H~~Tg 79 (190)
T PF02815_consen 1 GYLHSHDVIYPFHSEQQQVTTYPHNDDNNEFRRTVNRESGAVATSANSLWQIEPVSEDP-WSGGPVKWGDVIRLRHLSTG 79 (190)
T ss_dssp TCEECCEEEEEEETTTCEEEEEEESSTGCCEEEBEESSSGGGGGSGGGEEEEEE-TSST-TTTSB-BTTSEEEEEETTTS
T ss_pred CeeEEEeeCCCCCCCcceEEEECccCCCccccceeeeeccccccccccceEEecCCCCc-ccCCcccCCCEEEEEEccCC
Confidence 589999999999999999999998765552 39999865432 36778899999999999999
Q ss_pred ceeeecCCCCCCC-C---CceeEEEEe-----------------------------------------------cccccC
Q psy17901 91 KNLHSHHFSSPLS-G---AQEVSAYLS-----------------------------------------------ATRQTY 119 (218)
Q Consensus 91 ~~LhSH~~~sPis-~---qqEVScYL~-----------------------------------------------~sg~~~ 119 (218)
+|||+|+..+|++ . ++|||||.. +.+..+
T Consensus 80 ~yL~~~~~~~p~s~~~~~~~evs~~~~~~~~~d~~d~~~~i~~~~~~~~~~~~~~~~~~s~frL~H~~t~~~L~~~~~~l 159 (190)
T PF02815_consen 80 KYLHSHDVKSPISETDDYNQEVSCFGDDDIPGDANDDKVEIFEEKSSTGMGEDEIKTLDSYFRLRHVATGCWLHSHDVKL 159 (190)
T ss_dssp -EEEEEEEEECCCTCGG-SEEEEEEEEECESSS-SSG-GGEEEEEESSSCSSSSBBBTTSEEEEEETTTTEEEEEEEEES
T ss_pred CEEEEcccccccccccccCcceeeEeeccccCCccccceeEEEecccCCccCCcEEecccEEEEEECCcCEEEecCCccc
Confidence 9999999999999 4 799999632 111234
Q ss_pred CCCCCceeEEEeecCCCCCCcceEEeeeeec
Q psy17901 120 GRPISGQYEIVTVSWPDHNPVLWKTMEGIFI 150 (218)
Q Consensus 120 ~~~i~gQ~EV~c~~~~~d~~t~W~Veegv~~ 150 (218)
|.|+++|+||+|+.. ..++|+||++.++
T Consensus 160 p~wg~~q~Ev~~~~~---~~~~w~~e~~~~~ 187 (190)
T PF02815_consen 160 PEWGFGQQEVACMKK---SGTMWNVEDNENP 187 (190)
T ss_dssp -TTTTTSCEEEEEEE---EEEESSGGSST-E
T ss_pred ccccccccEEeeecC---CCceeeEeccccc
Confidence 689999999999987 4559999998864
No 5
>KOG3359|consensus
Probab=99.88 E-value=1e-22 Score=199.65 Aligned_cols=103 Identities=29% Similarity=0.264 Sum_probs=95.2
Q ss_pred cCCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccC---CCCCCceEEEcCCCCCCCCCCeeee-CCEEE
Q psy17901 8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVK---EDVNSHWIIKAPTGKTCKRGEPIKC-NDIIR 83 (218)
Q Consensus 8 ~~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~---~D~Nd~WiIe~~~~~~~~~~~~V~~-gd~IR 83 (218)
.++.++|++||.|||+|..||++||||++++|.+.+|+|||||+.. +|+||.|+|++.++.+.++++.|+. .+.||
T Consensus 375 ~~~~~~v~~G~~vrL~H~~T~r~LhsHdv~apvs~~~~EvS~yg~~~~~gd~~d~w~veIv~~~~~~~~~~i~tl~t~fR 454 (723)
T KOG3359|consen 375 ATQIEPVRHGDIVRLRHKMTGRNLHSHDVAAPVSPQQYEVSCYGDSGFEGDANDLWRVEIVKKKPNEDQERIKTLTTEFR 454 (723)
T ss_pred CCcceeccCCcEEEEEecccCcccccCCCCCCCCCCceEEEEEeccccccCccccEEEEEecCCCCCCCceEEEeeeEEE
Confidence 3568899999999999999999999999999999889999999875 7899999999999877778888987 57899
Q ss_pred EEecCCcceeeecCCCCCCC--CCceeEE
Q psy17901 84 LTHTTTNKNLHSHHFSSPLS--GAQEVSA 110 (218)
Q Consensus 84 L~H~~T~~~LhSH~~~sPis--~qqEVSc 110 (218)
|.|+.|||+|.||+..+|.| +||||+|
T Consensus 455 l~h~~t~c~L~ss~~~LP~WGf~Q~EV~c 483 (723)
T KOG3359|consen 455 LIHVLTGCYLKSSGKKLPEWGFEQQEVVC 483 (723)
T ss_pred EEEcccceEEccCCCcCCcccccceEEec
Confidence 99999999999999999999 6999999
No 6
>KOG3358|consensus
Probab=99.86 E-value=9.8e-22 Score=165.41 Aligned_cols=95 Identities=28% Similarity=0.494 Sum_probs=87.1
Q ss_pred cCCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccC--CCCCCceEEEcCCCCCCCCCCeeeeCCEEEEE
Q psy17901 8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVK--EDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLT 85 (218)
Q Consensus 8 ~~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~--~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~ 85 (218)
|..+.+|.||++|||.|+.||.+||||-++.|. |++||||||+.+ +|..|.|.|.+. +..|.....|||+
T Consensus 82 c~rG~pikcG~~iRL~H~~TgknLHSHhf~sPl-SgnqEVSafG~dgegDtgD~Wtvic~-------g~~W~r~~~vrl~ 153 (211)
T KOG3358|consen 82 CERGDPIKCGQTIRLTHLKTGKNLHSHHFTSPL-SGNQEVSAFGEDGEGDTGDHWTVICN-------GKTWKRDARVRLQ 153 (211)
T ss_pred ccCCCccccCCeEEEEEeecccchhhcccCCCC-CCCeeEEeecccCCCCcccceEEEeC-------CccccccceEEEE
Confidence 677899999999999999999999999999998 599999999976 788999999984 4558788899999
Q ss_pred ecCCcceeeecC--CCCCCCCCceeEE
Q psy17901 86 HTTTNKNLHSHH--FSSPLSGAQEVSA 110 (218)
Q Consensus 86 H~~T~~~LhSH~--~~sPis~qqEVSc 110 (218)
|+.|+.||++|+ +..|+++|+||.+
T Consensus 154 Hi~T~~yLs~sg~qygrpi~GQ~EV~G 180 (211)
T KOG3358|consen 154 HIDTSVYLSVSGEQYGRPISGQQEVVG 180 (211)
T ss_pred EeccceeEEecccccCCccCCceEEec
Confidence 999999999997 6799999999987
No 7
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1e-19 Score=178.35 Aligned_cols=106 Identities=27% Similarity=0.277 Sum_probs=96.1
Q ss_pred cCCCceeecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccC--CCCCCceEEEcCCCCCCCCCCeeee-CCEEEE
Q psy17901 8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVK--EDVNSHWIIKAPTGKTCKRGEPIKC-NDIIRL 84 (218)
Q Consensus 8 ~~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~--~D~Nd~WiIe~~~~~~~~~~~~V~~-gd~IRL 84 (218)
.++.++|++|+.|||+|..||++||+|++..|++.+|.|||||+.. +|++|.|+|++..+.+.+++..|++ .+.|||
T Consensus 357 ~~~~~~l~~G~~vrL~H~~T~~~Lh~H~~~~pvS~~~~EvS~yg~~~~gd~~d~w~i~i~~~~~~~~~~~i~pl~t~fRl 436 (699)
T COG1928 357 ATQIEPLKDGQSVRLRHKYTGKNLHFHDVKPPVSGNQYEVSGYGDSFEGDEKDDWIIEIVKDEANEDQERIHPLETKFRL 436 (699)
T ss_pred cccceeccCCcEEEEEEeeccceeecCCCCCCCCCCceeeeeccccccCCcccceeeEeeeccCCCccceeeecccceee
Confidence 4567899999999999999999999999999998888899999876 8899999999998877777788987 578999
Q ss_pred EecCCcceeeecCCCCCCC--CCceeEEEEe
Q psy17901 85 THTTTNKNLHSHHFSSPLS--GAQEVSAYLS 113 (218)
Q Consensus 85 ~H~~T~~~LhSH~~~sPis--~qqEVScYL~ 113 (218)
.|..|||||.||+..+|.| .|+||.|.-.
T Consensus 437 ~h~~~~cyL~s~~~~lP~Wgf~q~EV~c~~~ 467 (699)
T COG1928 437 YHVLTGCYLASHDLKLPEWGFSQREVLCAKD 467 (699)
T ss_pred eecccceeeccCCCCCCCcccccceeEeeec
Confidence 9999999999999999999 6999999544
No 8
>PF02815 MIR: MIR domain; InterPro: IPR003608 The MIR domain is named after three of the proteins in which it occurs: protein Mannosyltransferase (2.4.1.109 from EC), Inositol 1,4,5-trisphosphate receptor (IP3R) and Ryanodine receptor (RyR). MIR domains have also been found in eukaryotic stromal cell-derived factor 2 (SDF-2) and in Chlamydia trachomatis protein CT153. The MIR domain may have a ligand transferase function. This domain has a closed beta-barrel structure with a hairpin triplet, and has an internal pseudo-threefold symmetry. The MIR motifs that make up the MIR domain consist of ~50 residues and are often found in multiple copies. Inositol 1,4,5-trisphosphate (InsP3) is an intracellular second messenger that transduces growth factor and neurotransmitter signals. InsP3 mediates the release of Ca2+ from intracellular stores by binding to specific Ca2+ channel-coupled receptors. Ryanodine receptors are involved in communication between transverse-tubules and the sarcoplamic reticulum of cardiac and skeletal muscle. The proteins function as a Ca2+-release channels following depolarisation of transverse-tubules []. The function is modulated by Ca2+, Mg2+, ATP and calmodulin. Deficiency in the ryanodine receptor may be the cause of malignant hyperthermia (MH) and of central core disease of muscle (CCD) []. protein O-mannosyltransferases transfer mannose from DOL-P-mannose to ser or thr residues on proteins.; GO: 0016020 membrane; PDB: 1T9F_A 3UJ4_B 3UJ0_B 3T8S_B 3MAL_B 2XOA_A 1N4K_A.
Probab=99.77 E-value=6.1e-19 Score=148.16 Aligned_cols=103 Identities=30% Similarity=0.351 Sum_probs=77.6
Q ss_pred CCceeecCCEEEEEecCCCCceeccccCCCCCCC---ceeEEEEccC---CCCCCc--eEEEcCCCCCCCCCCeeee-CC
Q psy17901 10 NNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSG---QQSVTGTEVK---EDVNSH--WIIKAPTGKTCKRGEPIKC-ND 80 (218)
Q Consensus 10 ~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~---qQeVT~y~~~---~D~Nd~--WiIe~~~~~~~~~~~~V~~-gd 80 (218)
.+.+|.+|+.|||+|+.||.|||+|++..|.... +++||||+.. +|.||. .+++......... ..|.. .+
T Consensus 61 ~g~~v~~g~~iRL~H~~Tg~yL~~~~~~~p~s~~~~~~~evs~~~~~~~~~d~~d~~~~i~~~~~~~~~~~-~~~~~~~s 139 (190)
T PF02815_consen 61 SGGPVKWGDVIRLRHLSTGKYLHSHDVKSPISETDDYNQEVSCFGDDDIPGDANDDKVEIFEEKSSTGMGE-DEIKTLDS 139 (190)
T ss_dssp TTSB-BTTSEEEEEETTTS-EEEEEEEEECCCTCGG-SEEEEEEEEECESSS-SSG-GGEEEEEESSSCSS-SSBBBTTS
T ss_pred cCCcccCCCEEEEEEccCCCEEEEcccccccccccccCcceeeEeeccccCCccccceeEEEecccCCccC-CcEEeccc
Confidence 4778999999999999999999999999888776 8999999865 444665 2222222212223 34554 57
Q ss_pred EEEEEecCCcceeeecCCCCCCC--CCceeEEEEe
Q psy17901 81 IIRLTHTTTNKNLHSHHFSSPLS--GAQEVSAYLS 113 (218)
Q Consensus 81 ~IRL~H~~T~~~LhSH~~~sPis--~qqEVScYL~ 113 (218)
.|||+|+.|+|+||+|...+|.| +|+||+|...
T Consensus 140 ~frL~H~~t~~~L~~~~~~lp~wg~~q~Ev~~~~~ 174 (190)
T PF02815_consen 140 YFRLRHVATGCWLHSHDVKLPEWGFGQQEVACMKK 174 (190)
T ss_dssp EEEEEETTTTEEEEEEEEES-TTTTTSCEEEEEEE
T ss_pred EEEEEECCcCEEEecCCcccccccccccEEeeecC
Confidence 99999999999999999999999 5899999765
No 9
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=99.67 E-value=1.1e-16 Score=110.20 Aligned_cols=54 Identities=41% Similarity=0.582 Sum_probs=49.2
Q ss_pred CceeecCCEEEEEecCCCCceeccccC-CCCCCCceeEEEEccCC-CCCCceEEEc
Q psy17901 11 NQYVTCGSVVKLMNVDYRVRLHSHDVK-YGTGSGQQSVTGTEVKE-DVNSHWIIKA 64 (218)
Q Consensus 11 ~~~V~~Gs~IrL~H~~Tg~~LHSH~~~-yp~gS~qQeVT~y~~~~-D~Nd~WiIe~ 64 (218)
+..|++||+|||+|+.||+|||||+.. +|.|++||||||++..+ |.|++|+|++
T Consensus 1 g~~v~~g~~vrL~H~~tg~yL~s~~~~~~~~~~~q~eVt~~~~~~~~~~~~W~ie~ 56 (57)
T smart00472 1 GGFVRWGDVVRLRHVTTGRYLHSHENKLPPWGDGQQEVTGYGNPAGDANTLWLIEP 56 (57)
T ss_pred CCccccCCEEEEEEhhhCcEeecCCCCCCCCCCCcceEEEECCCCCCCCCcEEEEe
Confidence 357999999999999999999999999 67789999999998875 7889999986
No 10
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases.
Probab=99.53 E-value=2.1e-14 Score=98.68 Aligned_cols=54 Identities=31% Similarity=0.447 Sum_probs=45.4
Q ss_pred CeeeeCCEEEEEecCCcceeeecCCCCCCCCCceeEEEEecccccCCCCCCceeEEEeecCCC-CCCcceEEee
Q psy17901 74 EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVSWPD-HNPVLWKTME 146 (218)
Q Consensus 74 ~~V~~gd~IRL~H~~T~~~LhSH~~~sPis~qqEVScYL~~sg~~~~~~i~gQ~EV~c~~~~~-d~~t~W~Vee 146 (218)
..|.+||.|||+|+.||+|||+|+.++| .|+++|+||+|..... +.+++|.|+.
T Consensus 2 ~~v~~g~~vrL~H~~tg~yL~s~~~~~~-------------------~~~~~q~eVt~~~~~~~~~~~~W~ie~ 56 (57)
T smart00472 2 GFVRWGDVVRLRHVTTGRYLHSHENKLP-------------------PWGDGQQEVTGYGNPAGDANTLWLIEP 56 (57)
T ss_pred CccccCCEEEEEEhhhCcEeecCCCCCC-------------------CCCCCcceEEEECCCCCCCCCcEEEEe
Confidence 5689999999999999999999998855 5677888888877764 5566999986
No 11
>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum to discriminate between different types of neuronal activity []. ; PDB: 3UJ4_B 3UJ0_B 3T8S_B 3JRR_B 1XZZ_A 3ILA_B 3HSM_A 2XOA_A 3IM6_A 3IM7_A ....
Probab=98.82 E-value=1.4e-08 Score=87.72 Aligned_cols=85 Identities=21% Similarity=0.279 Sum_probs=65.1
Q ss_pred CceeecCCEEEEEecCCCCceeccccC-CCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCC
Q psy17901 11 NQYVTCGSVVKLMNVDYRVRLHSHDVK-YGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTT 89 (218)
Q Consensus 11 ~~~V~~Gs~IrL~H~~Tg~~LHSH~~~-yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T 89 (218)
+.+|.||++|.|.|+.|+.||...... +-.......|+.-...++.+.+|+|.|... ....|++|..||.|.|..+.+
T Consensus 95 g~~v~YGq~IQL~H~~S~kyL~~~~~~~s~~e~~~~~v~L~~~~~~e~s~F~i~P~~k-~r~~Gd~V~~gD~i~l~~~~~ 173 (214)
T PF08709_consen 95 GTPVLYGQAIQLLHVKSNKYLTCNSTEPSEYEKNNFKVSLQEFSSGENSWFRIHPAYK-QRSEGDPVRYGDQIILISVST 173 (214)
T ss_dssp T-B-BTTEEEEEEETTTTEEEEEEEEEESSSSTTSEEEEEESSSSSGGGEEEEEESST-TS-TTSB-BTT-EEEEEETTT
T ss_pred CCEEEecceEEEeEeCccEEEEEeCCCCCcccccceEEEeccCCCcccEEEEEEcchh-eEcCCCeeeeCCEEEEEECCC
Confidence 467999999999999999999877765 444566778998876654678999998765 334789999999999999999
Q ss_pred cceeeec
Q psy17901 90 NKNLHSH 96 (218)
Q Consensus 90 ~~~LhSH 96 (218)
+.|||..
T Consensus 174 ~~~Lh~s 180 (214)
T PF08709_consen 174 EQYLHVS 180 (214)
T ss_dssp -SEEEEE
T ss_pred CCccccc
Confidence 9999943
No 12
>PF08709 Ins145_P3_rec: Inositol 1,4,5-trisphosphate/ryanodine receptor; InterPro: IPR014821 This domain corresponds to the ligand binding region on inositol 1,4,5-trisphosphate receptor, and the N-terminal region of the ryanodine receptor. Both receptors are involved in Ca2+ release. They can couple to the activation of neurotransmitter-gated receptors and voltage-gated Ca2+ channels on the plasma membrane, thus allowing the endoplasmic reticulum to discriminate between different types of neuronal activity []. ; PDB: 3UJ4_B 3UJ0_B 3T8S_B 3JRR_B 1XZZ_A 3ILA_B 3HSM_A 2XOA_A 3IM6_A 3IM7_A ....
Probab=97.37 E-value=0.0014 Score=56.66 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=51.0
Q ss_pred CceeecCCEEEEEecCCC-CceeccccCCCCCCCceeEEEEccCCC--------CCCceEEEcCCC----------C-CC
Q psy17901 11 NQYVTCGSVVKLMNVDYR-VRLHSHDVKYGTGSGQQSVTGTEVKED--------VNSHWIIKAPTG----------K-TC 70 (218)
Q Consensus 11 ~~~V~~Gs~IrL~H~~Tg-~~LHSH~~~yp~gS~qQeVT~y~~~~D--------~Nd~WiIe~~~~----------~-~~ 70 (218)
..+|++||+|.|....+. ++|.+ .|..+..+..-...++ ....|.|.+... . ..
T Consensus 3 ~~~L~~Gd~V~L~~~~~~~~~l~a------~Gf~~~~~~l~~~~~~~~~~p~~f~~clF~I~p~~~~~a~~~~~~~~~~~ 76 (214)
T PF08709_consen 3 VQPLRYGDIVSLSCEDQDNGFLSA------EGFGNRKCFLEPFSGDKNNPPKDFRDCLFQICPALSYRAQQELLKEQQRK 76 (214)
T ss_dssp --B-BTT-EEEEEEESSSCEEEEE------SCSSC-BEEEEECCTTSSS-STTGGGGEEEEEEEEEHHHHHHHHHCCH--
T ss_pred ccccccCcEEEEEEeCCCCeEEEE------ecccCCcEEEEECCCcccCCccchheeEEEEcCCccHHHHHHHHHhhhhc
Confidence 357999999999998874 67766 3555566655443321 134577766521 0 00
Q ss_pred C----------------CCCeeeeCCEEEEEecCCcceeeecCCC
Q psy17901 71 K----------------RGEPIKCNDIIRLTHTTTNKNLHSHHFS 99 (218)
Q Consensus 71 ~----------------~~~~V~~gd~IRL~H~~T~~~LhSH~~~ 99 (218)
. .|.+|.-|+.|.|.|+.|++||......
T Consensus 77 ~~~~~~~~~~a~~~~~~~g~~v~YGq~IQL~H~~S~kyL~~~~~~ 121 (214)
T PF08709_consen 77 QQQEKLSDQAAQIEKEQNGTPVLYGQAIQLLHVKSNKYLTCNSTE 121 (214)
T ss_dssp -----HHHHHHHHHHHHHT-B-BTTEEEEEEETTTTEEEEEEEEE
T ss_pred ccccchhhhhhhhhcccCCCEEEecceEEEeEeCccEEEEEeCCC
Confidence 0 2566889999999999999999877543
No 13
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=96.09 E-value=0.031 Score=46.15 Aligned_cols=71 Identities=18% Similarity=0.308 Sum_probs=52.9
Q ss_pred eecCCEEEEEecCCCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCccee
Q psy17901 14 VTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNL 93 (218)
Q Consensus 14 V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~~L 93 (218)
-..|..|+|++ ..|.|||.-+-- .-|+.-......|..|.|+++.+ ..+.|+|+ ..-|+||
T Consensus 4 F~d~~~VRLRS-~~~kYL~ADeDg-------~~Vs~~~~~~s~na~W~Ve~v~~----------~~~~v~L~-saYGrYL 64 (142)
T PF04601_consen 4 FPDGKHVRLRS-HHGKYLHADEDG-------EGVSQDRRGASLNAAWTVERVPG----------SPNYVRLR-SAYGRYL 64 (142)
T ss_pred cCCCCEEEEEe-cCCCEEEEcCCC-------CeEEECCCCCCCcceEEEEEecC----------CCCEEEEe-eccCceE
Confidence 45788999999 889999986532 34655554455788999998643 13568886 4799999
Q ss_pred eecCCCCCCC
Q psy17901 94 HSHHFSSPLS 103 (218)
Q Consensus 94 hSH~~~sPis 103 (218)
..++.++|+.
T Consensus 65 ~as~~~~~lG 74 (142)
T PF04601_consen 65 AASDEPALLG 74 (142)
T ss_pred eccCCcCCCC
Confidence 9998887765
No 14
>KOG3533|consensus
Probab=95.22 E-value=0.063 Score=57.68 Aligned_cols=125 Identities=20% Similarity=0.249 Sum_probs=80.0
Q ss_pred CCCceeecCCEEEEEecCCC-Ccee-ccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEe
Q psy17901 9 RNNQYVTCGSVVKLMNVDYR-VRLH-SHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTH 86 (218)
Q Consensus 9 ~~~~~V~~Gs~IrL~H~~Tg-~~LH-SH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H 86 (218)
+.+..|..||.|.|.-++-| ..|| ...+..+...+-.||-|.. .|..|.|...-.-...+.+.++-||+|||.|
T Consensus 176 siGDnVvvGdKv~L~Pvna~~Q~lHvas~~eL~DnpgckEVN~~N----~nTsWki~lFm~~~en~e~~lKgGDVVRLFH 251 (2706)
T KOG3533|consen 176 SIGDNVVVGDKVSLIPVNAGTQPLHVASSFELLDNPGCKEVNCLN----CNTSWKIFLFMLFDENQENSLKGGDVVRLFH 251 (2706)
T ss_pred ccCCceEEcceEEEcccCCCCccchhhhccccCCCCCcccccccC----CCCcceeeeeeeeccchhhhhccCcEEEeec
Confidence 55788999999999988888 6888 3334444555566888774 4567988754333333556788999999999
Q ss_pred cCCcceeeecCCCCCCCCCceeEEEEecccccCC-----CCCCceeEEEeecCCCCCCcceE
Q psy17901 87 TTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYG-----RPISGQYEIVTVSWPDHNPVLWK 143 (218)
Q Consensus 87 ~~T~~~LhSH~~~sPis~qqEVScYL~~sg~~~~-----~~i~gQ~EV~c~~~~~d~~t~W~ 143 (218)
.....+|..-.++ .++-| ||..++.+-- .-..--.||+-..........||
T Consensus 252 AeQekFLT~Dey~----kq~hV--FLRtT~RqSAtsATSSkALWEveVVqhd~cRGGag~WN 307 (2706)
T KOG3533|consen 252 AEQEKFLTCDEYP----KQNHV--FLRTTNRQSATSATSSKALWEVEVVQHDPCRGGAGKWN 307 (2706)
T ss_pred ccccceeehhccc----ccceE--EEeccCCcccccccccccceeEEEEecCCCCCcccchh
Confidence 9999999665443 34433 7776654321 11112345554444444434676
No 15
>KOG3533|consensus
Probab=95.07 E-value=0.014 Score=62.32 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=74.2
Q ss_pred CceeecCCEEEEEecCCCCceeccccCCCC--CCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecC
Q psy17901 11 NQYVTCGSVVKLMNVDYRVRLHSHDVKYGT--GSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTT 88 (218)
Q Consensus 11 ~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~--gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~ 88 (218)
+..|.||++|.|.|+.++.||....-- |. ..+--.|+.-. .+.++++++|+|...- -..|+.|-.||.|.|.-++
T Consensus 117 G~viqYgsvvQLLH~KSNKYlTVnKrl-PallEkNAMrV~LDa-aGNEGSWfyI~PfyKl-rsiGDnVvvGdKv~L~Pvn 193 (2706)
T KOG3533|consen 117 GNVIQYGSVVQLLHVKSNKYLTVNKRL-PALLEKNAMRVYLDA-AGNEGSWFYIEPFYKL-RSIGDNVVVGDKVSLIPVN 193 (2706)
T ss_pred hhHhhhhhHHhhhhhccCceEEEeccC-hhhHhhcceEEEeec-cCCccceEEeehhHHh-hccCCceEEcceEEEcccC
Confidence 567999999999999999999887633 43 23334566543 2456678888876532 2467889899999999999
Q ss_pred Cc-ceee-ecCCCCCCC-CCceeEE
Q psy17901 89 TN-KNLH-SHHFSSPLS-GAQEVSA 110 (218)
Q Consensus 89 T~-~~Lh-SH~~~sPis-~qqEVSc 110 (218)
-| ..|| .+++.++.. |-.||.|
T Consensus 194 a~~Q~lHvas~~eL~DnpgckEVN~ 218 (2706)
T KOG3533|consen 194 AGTQPLHVASSFELLDNPGCKEVNC 218 (2706)
T ss_pred CCCccchhhhccccCCCCCcccccc
Confidence 88 8999 778888887 7789998
No 16
>KOG2243|consensus
Probab=92.80 E-value=0.12 Score=55.77 Aligned_cols=86 Identities=23% Similarity=0.256 Sum_probs=53.9
Q ss_pred CCCceeecCCEEEEEecCCCCceeccccC----------------CCCCCCceeEEEEcc-------------------C
Q psy17901 9 RNNQYVTCGSVVKLMNVDYRVRLHSHDVK----------------YGTGSGQQSVTGTEV-------------------K 53 (218)
Q Consensus 9 ~~~~~V~~Gs~IrL~H~~Tg~~LHSH~~~----------------yp~gS~qQeVT~y~~-------------------~ 53 (218)
++++.|+-||.+.|..+.+.+|||-.... .|..|+....-||-. .
T Consensus 171 segekvrigddlilvsvsserylhls~~ng~i~vdaaf~qtlw~v~p~~sgs~~~egyligg~v~rl~hghmdecltips 250 (5019)
T KOG2243|consen 171 SEGEKVRIGDDLILVSVSSERYLHLSVGNGNIHVDAAFMQTLWNVAPICSGSEAAEGYLIGGDVLRLFHGHMDECLTIPS 250 (5019)
T ss_pred ccCceeeecCceEEEEecccceEEEEecCCceeecHHHHHHHhccCCCcCCchhhhceeecchHHHHhccCccceeecCC
Confidence 55788999999999999998888843211 133222222222210 0
Q ss_pred CC-------------------CCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCcceeeec
Q psy17901 54 ED-------------------VNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSH 96 (218)
Q Consensus 54 ~D-------------------~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~~LhSH 96 (218)
+| +-+.|.+++..- .=.|..|+.|+.|||+|+.||.||.-.
T Consensus 251 ~d~~d~q~r~i~ye~g~~~~~a~slwr~e~lri--awsgs~irwgq~frlrh~ttg~ylal~ 310 (5019)
T KOG2243|consen 251 GDHGDEQHRRIFYEAGAAGTHARSLWRLEPLRI--AWSGSHIRWGQAFRLRHLTTGHYLALM 310 (5019)
T ss_pred CCccchhheeeeeeccccccchhhhhcccceeE--EeccCccccCcceeeeeccccceeeee
Confidence 11 224566665321 124667899999999999999999754
No 17
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins. Some family members contain two copies of the region.
Probab=92.41 E-value=0.74 Score=38.03 Aligned_cols=67 Identities=21% Similarity=0.268 Sum_probs=46.7
Q ss_pred CCEEEEEecCCCCceeccccCCCCCCCceeEEEE-ccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCcceeee
Q psy17901 17 GSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGT-EVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHS 95 (218)
Q Consensus 17 Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y-~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~~LhS 95 (218)
...|+|+ ...|+||..-+.++|.|-....|.-- ....|..-.|. +|+.|+.|+|+|. .|+||..
T Consensus 51 ~~~v~L~-saYGrYL~as~~~~~lG~~G~~v~Q~~~~~~d~~~~We-------------pvr~g~~V~Lr~~-~gr~LRA 115 (142)
T PF04601_consen 51 PNYVRLR-SAYGRYLAASDEPALLGHTGRRVVQTDPDRLDSSVEWE-------------PVRDGFYVKLRHR-SGRYLRA 115 (142)
T ss_pred CCEEEEe-eccCceEeccCCcCCCCCCCCEEEecCCccCCCCceEE-------------EecCCCEEEEEec-CCceEEc
Confidence 3567776 57899999999999998666666432 22233444563 3456889999996 5788887
Q ss_pred cCC
Q psy17901 96 HHF 98 (218)
Q Consensus 96 H~~ 98 (218)
.+-
T Consensus 116 NG~ 118 (142)
T PF04601_consen 116 NGG 118 (142)
T ss_pred CCC
Confidence 765
No 18
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=89.87 E-value=2 Score=32.20 Aligned_cols=65 Identities=17% Similarity=0.175 Sum_probs=47.3
Q ss_pred CCEEEEEecCCCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCcceeeec
Q psy17901 17 GSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSH 96 (218)
Q Consensus 17 Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~~LhSH 96 (218)
+..++|++..||.+|-.-... ....-.|..+...++.+-.|.|++.. .| .++|....++.+|-..
T Consensus 14 ~g~Y~i~n~~sg~~L~v~~~~---~~~g~~v~~~~~~~~~~Q~W~i~~~~-----------~g-~y~I~n~~s~~~Ldv~ 78 (105)
T PF14200_consen 14 DGYYKIRNVNSGKYLDVAGGS---TANGTNVQQWTCNGNDNQQWKIEPVG-----------DG-YYRIRNKNSGKVLDVA 78 (105)
T ss_dssp TTEEEEEETTTTEEEEEGCTT---CSTTEBEEEEESSSSGGGEEEEEEST-----------TS-EEEEEETSTTEEEEEG
T ss_pred CCEEEEEECCCCCEEEeCCCC---cCCCcEEEEecCCCCcCcEEEEEEec-----------CC-eEEEEECCCCcEEEEC
Confidence 578999999999999664422 23345677777665677799999743 23 5999999999888554
No 19
>KOG2243|consensus
Probab=84.41 E-value=1.3 Score=48.60 Aligned_cols=83 Identities=16% Similarity=0.218 Sum_probs=56.3
Q ss_pred CceeecCCEEEEEecCCCCceeccccCCCCCCCce---eEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEec
Q psy17901 11 NQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQ---SVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHT 87 (218)
Q Consensus 11 ~~~V~~Gs~IrL~H~~Tg~~LHSH~~~yp~gS~qQ---eVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~ 87 (218)
-+.+.||-.|-|+|..+|.||---... .+++.. -|-.-.+...+.-+|.|.++... ...|..|+.||-+.|..+
T Consensus 111 hrtllyghaillrhs~sgmyl~clsts--rs~tdklafdvgl~e~~tgeacwwtihpaskq-rsegekvrigddlilvsv 187 (5019)
T KOG2243|consen 111 HRTLLYGHAILLRHSFSGMYLCCLSTS--RSQTDKLAFDVGLQEDATGEACWWTIHPASKQ-RSEGEKVRIGDDLILVSV 187 (5019)
T ss_pred ceeeehhhhhhhhccccceEEEEeccc--ccccccceeeccccccCcCceeeEEecccccc-cccCceeeecCceEEEEe
Confidence 457889999999999999988542211 011111 12111122223468999887653 346788999999999999
Q ss_pred CCcceeeec
Q psy17901 88 TTNKNLHSH 96 (218)
Q Consensus 88 ~T~~~LhSH 96 (218)
.+.+|||-+
T Consensus 188 sserylhls 196 (5019)
T KOG2243|consen 188 SSERYLHLS 196 (5019)
T ss_pred cccceEEEE
Confidence 999999965
No 20
>KOG3743|consensus
Probab=76.53 E-value=6 Score=39.29 Aligned_cols=77 Identities=22% Similarity=0.219 Sum_probs=52.3
Q ss_pred ceeecCCEEEEEec---CC--CCceeccccCCCCCCCceeE-EEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEE
Q psy17901 12 QYVTCGSVVKLMNV---DY--RVRLHSHDVKYGTGSGQQSV-TGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLT 85 (218)
Q Consensus 12 ~~V~~Gs~IrL~H~---~T--g~~LHSH~~~yp~gS~qQeV-T~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~ 85 (218)
.-|+.|+.|.|-|- .| -.|||.-...++..+.++.- |.+-.++|+| . -+ . .+...+..+|+.|++|.|+
T Consensus 315 lcI~sGs~VsLFNRlrSQtvsTrYl~vE~gqF~as~~~W~aftI~l~d~~e~-g--~~-~-~~f~~r~g~i~ygsvV~LV 389 (622)
T KOG3743|consen 315 LCIRSGSKVSLFNRLRSQTVSTRYLSVENGQFHASSTQWGAFTIHLLDDDEN-G--SE-S-CDFVVRDGYIKYGSVVKLV 389 (622)
T ss_pred eeeccCCEEeeehhhhhhhcceeEEEeecceeeccCCccccEEEEEecCccc-c--cc-c-CCCCCCCcceeeccEEEEE
Confidence 45899999998873 23 36999999999888877764 4444333333 1 11 0 1112345678999999999
Q ss_pred ecCCccee
Q psy17901 86 HTTTNKNL 93 (218)
Q Consensus 86 H~~T~~~L 93 (218)
-..||..|
T Consensus 390 ~~vTG~~l 397 (622)
T KOG3743|consen 390 CSVTGITL 397 (622)
T ss_pred eecccccC
Confidence 99999765
No 21
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures. Coupled with the Kunitz-type soybean trypsin inhibitors (STI), they form a structural superfamily. Despite their structural correspondence, however, they show no sequence similarity to the STI family. The crystal structures of interleukin-1 beta and HBGF1 have been solved, showing both families to have the same 12-stranded beta-sheet structure []; the beta-sheets are arranged in 3 similar lobes around a central axis, 6 strands forming an anti-parallel beta-barrel [, ]. The beta-sheets are generally well preserved and the crystal structures superimpose in these areas. The intervening loops are less well conserved - the loop between beta-strands 6 and 7 is slightly longer in interleukin-1 beta.; GO: 0008083 growth factor activity; PDB: 1AFC_F 1BAR_A 2P39_A 1EV2_D 2BFH_A 4FGF_A 1BAS_A 1BFG_A 1FQ9_B 1CVS_A ....
Probab=57.25 E-value=59 Score=25.15 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=35.7
Q ss_pred CCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCcceeeec
Q psy17901 27 YRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSH 96 (218)
Q Consensus 27 Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~~LhSH 96 (218)
||.+|..++ .| .|.|-.+..|....|.|+.. .. ..|+|+++.|+.||-..
T Consensus 9 ~~~~L~i~~----~g----~V~gt~~~~~~~s~~~i~~~-----------~~-g~V~i~~~~s~~YLcmn 58 (122)
T PF00167_consen 9 TGYFLQINP----NG----TVDGTGDDNSPYSVFEIHSV-----------GF-GVVRIRGVKSCRYLCMN 58 (122)
T ss_dssp TSEEEEEET----TS----BEEEESSTTSTTGEEEEEEE-----------ET-TEEEEEETTTTEEEEEB
T ss_pred CCeEEEECC----CC----eEeCCCCcCcceeEEEEEec-----------cc-eEEEEEEecceEEEEEC
Confidence 366666543 33 67777766667778888763 22 58999999999999654
No 22
>PF09270 BTD: Beta-trefoil DNA-binding domain; InterPro: IPR015350 This DNA-binding domain adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3NBN_A 2F8X_C 3V79_C 3IAG_C 3BRG_C.
Probab=45.81 E-value=62 Score=27.30 Aligned_cols=74 Identities=19% Similarity=0.190 Sum_probs=35.5
Q ss_pred eecCCEEEEEec---CCC--CceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCC------CCCCeeeeCCEE
Q psy17901 14 VTCGSVVKLMNV---DYR--VRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTC------KRGEPIKCNDII 82 (218)
Q Consensus 14 V~~Gs~IrL~H~---~Tg--~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~------~~~~~V~~gd~I 82 (218)
|..|+.|.|-|- .|- .|||.-... .+.+ ++|-.....++-++|...+.... ....+|..|+.|
T Consensus 3 I~~Gs~VsLFNRirSQTVsTrYL~v~~~~--~~~g----~~f~as~~~W~~F~I~lvd~~~~~~~~~~~~~~~I~YGs~V 76 (158)
T PF09270_consen 3 ISSGSTVSLFNRIRSQTVSTRYLHVENGA--SGHG----PRFVASSTQWDPFTIHLVDDPRSNAEPFDVREGYIHYGSTV 76 (158)
T ss_dssp -BTTCEEEEEEECTTECCCEEEEEEETT------------EEEEESS----EEEEEE-TT--SSSCEEEE-SB-BTTSEE
T ss_pred ecCCCEEEeEcccccccccceeeecCCCc--ccce----eeeeeccCcccceEEEEecCCccccCCCCCCCCceecCCEE
Confidence 678999999984 232 488653322 1111 11211222334444544422111 112378889999
Q ss_pred EEEecCCccee
Q psy17901 83 RLTHTTTNKNL 93 (218)
Q Consensus 83 RL~H~~T~~~L 93 (218)
.|.-..||..|
T Consensus 77 ~Lv~~~TGv~s 87 (158)
T PF09270_consen 77 VLVCSVTGVSS 87 (158)
T ss_dssp EEEETTT-EBE
T ss_pred EEEECCCCccc
Confidence 99999999765
No 23
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=44.79 E-value=45 Score=27.61 Aligned_cols=42 Identities=17% Similarity=0.157 Sum_probs=27.3
Q ss_pred CceEEEcCCCCCC-CC----CCeee-eCCEEEEEecCCcceeeecCCC
Q psy17901 58 SHWIIKAPTGKTC-KR----GEPIK-CNDIIRLTHTTTNKNLHSHHFS 99 (218)
Q Consensus 58 d~WiIe~~~~~~~-~~----~~~V~-~gd~IRL~H~~T~~~LhSH~~~ 99 (218)
.+||+-..++.+. .. -.+|. ++..|+|+|+.+|.|++.-...
T Consensus 68 ~~WI~a~s~d~~e~~sscTLF~Pv~~d~~~i~lr~vq~~~~~~r~t~~ 115 (139)
T smart00791 68 HYWITADANDPDENKSACTLFRPLYVEMKKIRLLNVQLGHYTKRYTVG 115 (139)
T ss_pred CCEEEecCCCCccCCCcccEEeEEeccCceEEEEEecCCceEEeecCC
Confidence 4677765554421 11 13554 5679999999999999775543
No 24
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family plays essential roles in patterning and differentiation during vertebrate embryogenesis, and has neurotrophic activities. FGFs have a high affinity for heparan sulfate proteoglycans and require heparan sulfate to activate one of four cell surface FGF receptors. Upon binding to FGF, the receptors dimerize and their intracellular tyrosine kinase domains become active. FGFs have internal pseudo-threefold symmetry (beta-trefoil topology).
Probab=35.85 E-value=70 Score=25.30 Aligned_cols=39 Identities=13% Similarity=0.101 Sum_probs=27.5
Q ss_pred EEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCcceeeecC
Q psy17901 47 VTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHH 97 (218)
Q Consensus 47 VT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~~LhSH~ 97 (218)
|.|.....|....|.|.... ...|+|+++.|+.||-...
T Consensus 19 V~Gt~~~~~~~s~l~~~s~~------------~g~v~i~~v~s~~YLCmn~ 57 (123)
T cd00058 19 VDGTRDDSSSYTILERIAVA------------VGVVSIKGVASCRYLCMNK 57 (123)
T ss_pred EecccCCCCCCceEEEEECC------------CCEEEEEEcccceEEEECC
Confidence 66665555556677777532 3488999999999996653
No 25
>KOG2572|consensus
Probab=35.59 E-value=17 Score=35.17 Aligned_cols=6 Identities=50% Similarity=0.833 Sum_probs=2.4
Q ss_pred HhhHHH
Q psy17901 163 RRKKEK 168 (218)
Q Consensus 163 ~~~~~~ 168 (218)
.+++-+
T Consensus 447 KkkK~~ 452 (498)
T KOG2572|consen 447 KKKKAK 452 (498)
T ss_pred hhHHHH
Confidence 334444
No 26
>PF06375 BLVR: Bovine leukaemia virus receptor (BLVR); InterPro: IPR010474 Bovine leukemia virus (BLV) is one of the most common infectious cattle viruses, with between 30 and 40% of cows in the United States being infected. It is closely related to the human T-cell leukaemia virus type 1 (HTLV-1) and has highly conserved envelope glycoprotein functional domains []. BLV is an oncogenic C-type retrovirus, which results in the animals developing a malignant lymphoma. BLV, like the human and simian T cell leukaemia viruses, is a deltaretrovirus. 182 residues at the amino-terminal of the BLV envelope glycoprotein surface unit encompass the receptor-binding domain. The metabolic activity in B cells, T cells, and thymocytes is indicated by the expression of the BLV-binding receptor []. A candidate gene of the receptor (BLVR) is related, but unique, to a gene family of the delta subunit of the adaptor protein (AP) complex 3, AP-3 []. The AP-3 complex is not clathrin-associated but is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to lysosomes. ; PDB: 4AFI_B.
Probab=31.46 E-value=15 Score=30.81 Aligned_cols=8 Identities=0% Similarity=-0.143 Sum_probs=2.4
Q ss_pred ceEEeeee
Q psy17901 141 LWKTMEGI 148 (218)
Q Consensus 141 ~W~Veegv 148 (218)
++.++-.+
T Consensus 48 v~~idl~v 55 (154)
T PF06375_consen 48 VAEIDLSV 55 (154)
T ss_dssp EEE---SS
T ss_pred ccccccCC
Confidence 45555444
No 27
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF)
Probab=31.44 E-value=2.2e+02 Score=21.28 Aligned_cols=57 Identities=16% Similarity=0.124 Sum_probs=33.1
Q ss_pred EEEEEecCCCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCcceeeec
Q psy17901 19 VVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSH 96 (218)
Q Consensus 19 ~IrL~H~~Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~~LhSH 96 (218)
.|+|+.. +|.||..-.. | -.|.+-.........|.++... +..|.|+. .+|.||...
T Consensus 3 ~v~Lrs~-~gkyl~~~~~----g---~~v~a~~~~~~~~e~F~l~~~~------------~g~v~Lrs-~~G~yls~~ 59 (119)
T cd00257 3 QVVLRSV-NGRYLSAEAG----G---DKVDANRDSLKGDETFTLEFDN------------TGKYALRS-HDGKYLSAD 59 (119)
T ss_pred EEEEEEc-CCCEEEEecc----C---CEEEEcCccCCCceEEEEEECC------------CCeEEEEE-CCCcEEEEE
Confidence 4789988 8889876442 1 1444433322223466665421 34566665 588888764
No 28
>TIGR02334 prpF probable AcnD-accessory protein PrpF. The 2-methylcitrate cycle is one of at least five degradation pathways for propionate via propionyl-CoA. Degradation of propionate toward pyruvate consumes oxaloacetate and releases succinate. Oxidation of succinate back into oxaloacetate by the TCA cycle makes the 2-methylcitrate pathway a cycle. This family consists of PrpF, an incompletely characterized protein that appears to be an essential accessory protein for the Fe/S-dependent 2-methylisocitrate dehydratase AcnD (TIGR02333). This protein is related to but distinct from FldA (part of Pfam family pfam04303), a putative fluorene degradation protein of Sphingomonas sp. LB126.
Probab=29.81 E-value=1.2e+02 Score=29.17 Aligned_cols=56 Identities=14% Similarity=0.258 Sum_probs=34.6
Q ss_pred CEEEEEecCCcceeeecCC----CCCCCCCceeEE-----------EEecc----cccCC--C-------CCCceeEEEe
Q psy17901 80 DIIRLTHTTTNKNLHSHHF----SSPLSGAQEVSA-----------YLSAT----RQTYG--R-------PISGQYEIVT 131 (218)
Q Consensus 80 d~IRL~H~~T~~~LhSH~~----~sPis~qqEVSc-----------YL~~s----g~~~~--~-------~i~gQ~EV~c 131 (218)
+.||+++++|+..+++|-. .....+..++.+ ||... |..+| . ++.+..||+|
T Consensus 129 t~VRI~ntNT~kii~a~v~~~~G~~~~~Gd~~IdGVpGt~apI~L~F~dpaGs~TG~LlPTGn~~D~i~~~g~~~i~vS~ 208 (390)
T TIGR02334 129 CTVRIWQANIGKTIIAHVPISGGQVQETGDFELDGVTFPAAEVQLEFLDPADDGEGAMFPTGNLVDDLEVPGVGTFKATL 208 (390)
T ss_pred EEEEEEEcCCCcEEEEEEecCCCeecccCCeeeCCCCCCCCceEEEeeccccCCCCCCCCCCCceEEEECCCCceEEEEE
Confidence 4799999999999998831 111114455544 55444 33332 1 2236799999
Q ss_pred ecCC
Q psy17901 132 VSWP 135 (218)
Q Consensus 132 ~~~~ 135 (218)
....
T Consensus 209 IDaa 212 (390)
T TIGR02334 209 INAG 212 (390)
T ss_pred EECC
Confidence 8765
No 29
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain. Although its biological function is unknown, it has a high binding specificity for the methyl-glycoside of the T-antigen, found linked to serine or threonine residues of cell surface glycoproteins PUBMED:2271665. The protein is comprised of a homodimer, with each homodimer consisting of two beta-trefoil domains PUBMED:9334739.
Probab=28.05 E-value=53 Score=27.15 Aligned_cols=25 Identities=12% Similarity=0.001 Sum_probs=19.8
Q ss_pred Cceee-cCCEEEEEecCCCCceeccc
Q psy17901 11 NQYVT-CGSVVKLMNVDYRVRLHSHD 35 (218)
Q Consensus 11 ~~~V~-~Gs~IrL~H~~Tg~~LHSH~ 35 (218)
..+|. .+.+|+|+|+.+|.+++.-.
T Consensus 88 F~Pv~~d~~~i~lr~vq~~~~~~r~t 113 (139)
T smart00791 88 FRPLYVEMKKIRLLNVQLGHYTKRYT 113 (139)
T ss_pred EeEEeccCceEEEEEecCCceEEeec
Confidence 44554 78999999999999988744
No 30
>KOG4364|consensus
Probab=27.33 E-value=2e+02 Score=29.77 Aligned_cols=6 Identities=67% Similarity=0.944 Sum_probs=2.6
Q ss_pred hhhhhh
Q psy17901 208 KKKKIM 213 (218)
Q Consensus 208 ~~~~~~ 213 (218)
+..+||
T Consensus 334 KR~k~~ 339 (811)
T KOG4364|consen 334 KRAKIM 339 (811)
T ss_pred HHHHHH
Confidence 334444
No 31
>PF09270 BTD: Beta-trefoil DNA-binding domain; InterPro: IPR015350 This DNA-binding domain adopt a beta-trefoil fold, that is, a capped beta-barrel with internal pseudo threefold symmetry. In the DNA-binding protein LAG-1, it also is the site of mutually exclusive interactions with NotchIC (and the viral protein EBNA2) and corepressors (SMRT/N-Cor and CIR) []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2FO1_A 3NBN_A 2F8X_C 3V79_C 3IAG_C 3BRG_C.
Probab=26.08 E-value=50 Score=27.82 Aligned_cols=19 Identities=32% Similarity=0.349 Sum_probs=15.0
Q ss_pred ceeecCCEEEEEecCCCCc
Q psy17901 12 QYVTCGSVVKLMNVDYRVR 30 (218)
Q Consensus 12 ~~V~~Gs~IrL~H~~Tg~~ 30 (218)
.+|.||++|.|+-..||..
T Consensus 68 ~~I~YGs~V~Lv~~~TGv~ 86 (158)
T PF09270_consen 68 GYIHYGSTVVLVCSVTGVS 86 (158)
T ss_dssp SB-BTTSEEEEEETTT-EB
T ss_pred CceecCCEEEEEECCCCcc
Confidence 4899999999999999954
No 32
>KOG0345|consensus
Probab=23.51 E-value=2e+02 Score=28.77 Aligned_cols=8 Identities=0% Similarity=0.111 Sum_probs=4.9
Q ss_pred CceEEEcC
Q psy17901 58 SHWIIKAP 65 (218)
Q Consensus 58 d~WiIe~~ 65 (218)
=.|+|+..
T Consensus 326 iD~VvQ~D 333 (567)
T KOG0345|consen 326 IDLVVQFD 333 (567)
T ss_pred ceEEEecC
Confidence 35777653
No 33
>smart00442 FGF Acidic and basic fibroblast growth factor family. Mitogens that stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin. The family play essential roles in patterning and differentiation during vertebrate embryogenesis, and have neurotrophic activities.
Probab=22.95 E-value=1.4e+02 Score=23.61 Aligned_cols=52 Identities=15% Similarity=0.156 Sum_probs=30.8
Q ss_pred CCCCceeccccCCCCCCCceeEEEEccCCCCCCceEEEcCCCCCCCCCCeeeeCCEEEEEecCCcceeeecC
Q psy17901 26 DYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHH 97 (218)
Q Consensus 26 ~Tg~~LHSH~~~yp~gS~qQeVT~y~~~~D~Nd~WiIe~~~~~~~~~~~~V~~gd~IRL~H~~T~~~LhSH~ 97 (218)
.+|.+|..++ .| .|.|..+..+....|.+.... . ..|+|+++.|+.||-...
T Consensus 10 ~~~~~L~I~~----~G----~V~Gt~~~~~~~~ile~~s~~-----------~-g~V~ik~~~s~~YLCmn~ 61 (126)
T smart00442 10 RNGQHLQILP----DG----TVDGTRDESSSFTILEIIAVA-----------V-GVVAIKGVASCRYLCMNK 61 (126)
T ss_pred CCCeEEEEcC----Cc----eEecccCCCCcceEEEEEecc-----------C-CEEEEEEcccceEEEECC
Confidence 3455666653 33 355444333444566665432 1 468999999999996643
No 34
>KOG0310|consensus
Probab=21.65 E-value=6.6e+02 Score=24.93 Aligned_cols=48 Identities=15% Similarity=0.234 Sum_probs=32.5
Q ss_pred ceEEEcCCCCCC------CCCCee-ee-CCEEEEEecCCcceeeecCCCCCCCCCceeEE
Q psy17901 59 HWIIKAPTGKTC------KRGEPI-KC-NDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA 110 (218)
Q Consensus 59 ~WiIe~~~~~~~------~~~~~V-~~-gd~IRL~H~~T~~~LhSH~~~sPis~qqEVSc 110 (218)
.|+++...+.+. +.|..| -+ |..|++--+.||+-|-+. -.+.+.+|||
T Consensus 188 ~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~----~~~H~KtVTc 243 (487)
T KOG0310|consen 188 SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS----MFNHNKTVTC 243 (487)
T ss_pred ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh----hhcccceEEE
Confidence 689888777652 344444 34 578999999888877432 2226789999
Done!