RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17901
(218 letters)
>gnl|CDD|224839 COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl
transferase [Posttranslational modification, protein
turnover, chaperones].
Length = 699
Score = 72.9 bits (179), Expect = 5e-15
Identities = 37/82 (45%), Positives = 47/82 (57%), Gaps = 3/82 (3%)
Query: 31 LHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTN 90
LHSH+ Y GS QQ VTG K D N+ W+I+ + + + EP+K +RL H T
Sbjct: 320 LHSHNQLYPEGSEQQQVTGYGHK-DANNEWLIE-LSDENATQIEPLKDGQSVRLRHKYTG 377
Query: 91 KNLHSHHFSSPLSGAQ-EVSAY 111
KNLH H P+SG Q EVS Y
Sbjct: 378 KNLHFHDVKPPVSGNQYEVSGY 399
Score = 46.3 bits (110), Expect = 4e-06
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 7/107 (6%)
Query: 8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQ---SVTGTEVKEDVNSHWIIKA 64
A + + G V+L + LH HDVK SG Q S G + D WII+
Sbjct: 357 ATQIEPLKDGQSVRLRHKYTGKNLHFHDVKPPV-SGNQYEVSGYGDSFEGDEKDDWIIEI 415
Query: 65 PTGKTCKRGEPIKC-NDIIRLTHTTTNKNLHSHHFSSP--LSGAQEV 108
+ + E I RL H T L SH P +EV
Sbjct: 416 VKDEANEDQERIHPLETKFRLYHVLTGCYLASHDLKLPEWGFSQREV 462
>gnl|CDD|236877 PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional.
Length = 434
Score = 59.6 bits (145), Expect = 1e-10
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R + K +KK K KK K+ + K+K+KEK K KK+ + K K++K
Sbjct: 377 RPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 58.0 bits (141), Expect = 4e-10
Identities = 15/52 (28%), Positives = 27/52 (51%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ +K+ K +K K+ +KK+K K+K K KK+ + K K++K
Sbjct: 380 TKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 57.3 bits (139), Expect = 8e-10
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K K +KK K KK K+ ++K+K+K+K K KK+ + K I ++
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKR 425
Score = 57.3 bits (139), Expect = 9e-10
Identities = 19/47 (40%), Positives = 25/47 (53%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K EKK K KK + +KKEK+K+K K KK+ + K RK
Sbjct: 381 KAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRK 427
Score = 54.9 bits (133), Expect = 5e-09
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K K +KK K KK K+ +K++K+K+K K KK+ + K R++ +
Sbjct: 379 KTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPS 429
Score = 51.5 bits (124), Expect = 7e-08
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
A S ++ K KK ++ +KK+K+K+K KK+ K K++K
Sbjct: 382 APSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 50.7 bits (122), Expect = 2e-07
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K + E + K K +KK K KK K+ +KK+K+K+K K KK R +N
Sbjct: 369 KARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKN 421
Score = 49.9 bits (120), Expect = 2e-07
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
P + KK K+ EKK+K+K+K K K + + + K++K
Sbjct: 383 PSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 49.9 bits (120), Expect = 3e-07
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ R E + K + +KK K K K+ +KK+K+K+K K KK+ +
Sbjct: 369 KARVIDELRPKTKAPSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDT 419
Score = 44.9 bits (107), Expect = 1e-05
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
PS+ ++ ++ +K+EK+K+K K KK+ K K++K
Sbjct: 383 PSEKKTGKPSKKVLAKRAEKKEKEKEKPKVKKRHRDTKNIGKRRKPSGT 431
Score = 34.9 bits (81), Expect = 0.023
Identities = 7/31 (22%), Positives = 16/31 (51%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKE 192
++ K+++K K +K+ + K K+ K
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRKPSGTS 432
Score = 32.2 bits (74), Expect = 0.18
Identities = 7/33 (21%), Positives = 18/33 (54%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEK 193
++ ++KEK K +++ + K K++ E+
Sbjct: 402 KKEKEKEKPKVKKRHRDTKNIGKRRKPSGTSEE 434
>gnl|CDD|197746 smart00472, MIR, Domain in ryanodine and inositol trisphosphate
receptors and protein O-mannosyltransferases.
Length = 57
Score = 52.0 bits (125), Expect = 1e-09
Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 12 QYVTCGSVVKLMNVDYRVRLHSHDVKYG-TGSGQQSVTGTEVK-EDVNSHWII 62
+V G VV+L +V LHSHD K G GQQ VTG D N+ W+I
Sbjct: 2 GFVRWGDVVRLRHVTTGRYLHSHDEKLPPWGDGQQEVTGYGNPAIDANTLWLI 54
Score = 49.6 bits (119), Expect = 1e-08
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 73 GEPIKCNDIIRLTHTTTNKNLHSHHFSSPL--SGAQEVSAYLSATR 116
G ++ D++RL H TT + LHSH P G QEV+ Y +
Sbjct: 1 GGFVRWGDVVRLRHVTTGRYLHSHDEKLPPWGDGQQEVTGYGNPAI 46
>gnl|CDD|237753 PRK14552, PRK14552, C/D box methylation guide ribonucleoprotein
complex aNOP56 subunit; Provisional.
Length = 414
Score = 52.3 bits (126), Expect = 4e-08
Identities = 26/50 (52%), Positives = 37/50 (74%), Gaps = 2/50 (4%)
Query: 164 RKKEKKKKEEKKKK--KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+++ K+ EE K+K K KKK++ KK +K KKKKK+KKK KK+KKK +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 51.9 bits (125), Expect = 5e-08
Identities = 24/46 (52%), Positives = 35/46 (76%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+R +E K+K K KKK+++KK K+KKK+K+KKK KK+KKK +K
Sbjct: 369 NKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 48.4 bits (116), Expect = 7e-07
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
+ + K KKK E+KK +K+KKKKK KKK K++KKK +K
Sbjct: 376 KEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGRK 414
Score = 45.7 bits (109), Expect = 6e-06
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K++ K+ ++ K+K K KKK+E+KK +K+KKKKK+KKK KK +K
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 44.6 bits (106), Expect = 1e-05
Identities = 20/45 (44%), Positives = 32/45 (71%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++ K+E K+ ++ K+K KKK ++KK +K+KKKKK+KKK K
Sbjct: 362 DELKEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGK 406
Score = 41.5 bits (98), Expect = 1e-04
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KEE K+ ++ K+K K KK++++KK +K+KKKKK+KKK RK++
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKGKKRKKK 411
Score = 36.9 bits (86), Expect = 0.006
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E+ K+ ++ K+K K K KK+++KK +K+KKKKK+KK +K +
Sbjct: 366 EELNKRIEEIKEKYPKPPK-KKREEKKPQKRKKKKKRKKKGKKRKK 410
Score = 32.6 bits (75), Expect = 0.15
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKK 185
P P ++ +K KKKK+ KKK KK+KKK +
Sbjct: 380 PKPPKKKREEKKPQKRKKKKKRKKKGKKRKKKGR 413
Score = 31.1 bits (71), Expect = 0.37
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K++ K+ + K+K K KKK+++KK +K+KKK RK++
Sbjct: 365 KEELNKRIEEIKEKYPKPPKKKREEKKPQKRKKKKKRKKKG 405
>gnl|CDD|217239 pfam02815, MIR, MIR domain. The MIR (protein mannosyltransferase,
IP3R and RyR) domain is a domain that may have a ligand
transferase function.
Length = 189
Score = 50.1 bits (120), Expect = 9e-08
Identities = 31/103 (30%), Positives = 37/103 (35%), Gaps = 23/103 (22%)
Query: 31 LHSHDVKYGTGSGQQSVT------------------GTEVKEDVNSHWIIKAPTGKTCKR 72
LHS DV S QQ + V S W I+ R
Sbjct: 3 LHSGDVLRLFHSEQQQILTYPHLDQNNDFLRTTSYESGAVATSSRSLWRIEPVQRDPW-R 61
Query: 73 GEPIKCNDIIRLTHTTTNKNLHSHHFSSPLS----GAQEVSAY 111
G K + RL H TT + LHSH P+S +EVSAY
Sbjct: 62 GGLGKWGSVFRLRHLTTGRYLHSHEEKPPVSEKEDWQKEVSAY 104
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 48.8 bits (117), Expect = 6e-07
Identities = 19/57 (33%), Positives = 40/57 (70%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KK KK ++ +K +KK++++ K+KKK+ KKK+++++++K+KK+ ++EE
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Score = 48.8 bits (117), Expect = 7e-07
Identities = 21/58 (36%), Positives = 42/58 (72%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ K+ KK EK +KK++++KK+ KKK KKK+++++++K+KK+++K +EE
Sbjct: 404 GSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461
Score = 48.0 bits (115), Expect = 1e-06
Identities = 20/53 (37%), Positives = 40/53 (75%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KK KK E+ +KK++++KK+K KK KKK+++++++K+KK+++K+ +E
Sbjct: 410 KKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEA 462
Score = 48.0 bits (115), Expect = 1e-06
Identities = 21/57 (36%), Positives = 43/57 (75%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K EKK++EEKK+KKKK K K++++E++K+KK+++K++++++ ++ +EE
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 47.6 bits (114), Expect = 1e-06
Identities = 20/57 (35%), Positives = 41/57 (71%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++ +K KK +K +KK++++KK KKKK KKK+++++++K+KK+++ +EE
Sbjct: 405 SKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461
Score = 47.6 bits (114), Expect = 2e-06
Identities = 14/56 (25%), Positives = 46/56 (82%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
V + ++R +++K+KK++ KKK+++++ +K+KKE++K++++++ +++K+++++
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 47.6 bits (114), Expect = 2e-06
Identities = 19/53 (35%), Positives = 43/53 (81%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KK +K E+K++++KK+KKKK KK++++++++K+KK+++K++++ +EE
Sbjct: 413 KKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEE 465
Score = 47.2 bits (113), Expect = 2e-06
Identities = 20/57 (35%), Positives = 40/57 (70%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K KK K+ +K +KK++++K +KKKK KKK+++++++K+KK++ +EE
Sbjct: 403 TGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEE 459
Score = 46.5 bits (111), Expect = 4e-06
Identities = 17/62 (27%), Positives = 44/62 (70%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ S + +K +K ++ +KK++++KK+KK K +KK+++++++K+KK+++K++ +
Sbjct: 402 LTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEE 461
Query: 216 EE 217
E
Sbjct: 462 AE 463
Score = 46.5 bits (111), Expect = 4e-06
Identities = 15/58 (25%), Positives = 44/58 (75%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ KK +++K+EKKKK KKK+ +++++++KK+++K++++++ +++K+ +++
Sbjct: 416 VEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKK 473
Score = 46.1 bits (110), Expect = 5e-06
Identities = 18/53 (33%), Positives = 40/53 (75%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K+ +K EKK++++KK+KKK K+K+++++++K+KK+++K+++ EE
Sbjct: 412 IKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEE 464
Score = 45.3 bits (108), Expect = 1e-05
Identities = 17/53 (32%), Positives = 43/53 (81%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K +K +++++++KK+KKKK KKKE++++++K+KK+++K+++++ +E+
Sbjct: 414 KIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEK 466
Score = 44.5 bits (106), Expect = 2e-05
Identities = 15/50 (30%), Positives = 43/50 (86%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+++K+KK KKK+++++++K+ K+++KE+++++ +++K+++++KKKK
Sbjct: 426 EKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
Score = 44.1 bits (105), Expect = 2e-05
Identities = 16/57 (28%), Positives = 44/57 (77%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ ++K+++E+K+KKKK KK +++++E+K+KK+++K++++++ +++ +EE
Sbjct: 415 IVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEE 471
Score = 42.2 bits (100), Expect = 9e-05
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+EE + KK K KK EK +KK++++KK+KKKK +KEE
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEE 442
Score = 42.2 bits (100), Expect = 9e-05
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++E + KK KK KK K +KK +++KK+KKKK KKK++
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEE 442
Score = 41.4 bits (98), Expect = 2e-04
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++E + KK KK KK ++ +KK++++KK+KKKK ++EE
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEE 444
Score = 38.0 bits (89), Expect = 0.002
Identities = 14/43 (32%), Positives = 37/43 (86%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+ K+K+++EE++K+KK+++K++ +++ +E+K+++++KKKK
Sbjct: 433 KAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEEEEEKKKK 475
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 46.8 bits (112), Expect = 3e-06
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E+KK +K++K +KK +K+ +K KKK + KK K + K
Sbjct: 408 PAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETK 454
Score = 44.9 bits (107), Expect = 1e-05
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 164 RKK--EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
RKK +K++K EKK +K++ +K KKK + KK K + KK
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 44.2 bits (105), Expect = 3e-05
Identities = 17/46 (36%), Positives = 27/46 (58%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
R+K KK+++ +KK +K++ +K KKK E KK K + KK
Sbjct: 411 RKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 40.3 bits (95), Expect = 4e-04
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+ ++ + R++ +K+++K E+K +K++ +K KK + KK K + KK
Sbjct: 403 NGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKV 456
Score = 38.8 bits (91), Expect = 0.002
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++KK +KK++ +KK EK++ +K KKK + KK +
Sbjct: 405 NLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Score = 37.6 bits (88), Expect = 0.004
Identities = 13/54 (24%), Positives = 29/54 (53%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++E+ + ++KK +KK +K +K+ +K++ +K KKK + K +
Sbjct: 397 EEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPD 450
Score = 37.2 bits (87), Expect = 0.004
Identities = 13/47 (27%), Positives = 28/47 (59%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ ++++ E ++KK KK++K +KK +K++ +K KKK +
Sbjct: 394 AEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAE 440
Score = 31.8 bits (73), Expect = 0.24
Identities = 10/50 (20%), Positives = 26/50 (52%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ E+++ + +KK ++K++K +KK +K++ +K + E
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAA 442
Score = 31.4 bits (72), Expect = 0.30
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ E ++++ + ++KK KK++K +KK +K++ +K
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAA 434
Score = 31.4 bits (72), Expect = 0.38
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ +EE+ + ++ K +KK++K +KK +K++ +K KK
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKK 437
Score = 31.4 bits (72), Expect = 0.39
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K + EE++ + + KK +K+++K +KK +K++ +K K
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAK 436
Score = 29.9 bits (68), Expect = 0.94
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ + ++++ +N ++KK +KK++K +KK +K+ K
Sbjct: 390 KPLLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAA 434
Score = 29.5 bits (67), Expect = 1.2
Identities = 9/46 (19%), Positives = 24/46 (52%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ ++++ + N + KK +KK++K +KK +K++ +
Sbjct: 392 LLAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKK 437
>gnl|CDD|236048 PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.
Length = 859
Score = 46.7 bits (112), Expect = 4e-06
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K EK + K KK K +K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGK 857
Score = 46.3 bits (111), Expect = 5e-06
Identities = 10/43 (23%), Positives = 15/43 (34%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
EK +K K K K +K K++ +K K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 44.8 bits (107), Expect = 2e-05
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K E+ + K KK K +K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 44.0 bits (105), Expect = 3e-05
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
P+ A + ++ + + K KK K +K K++ +K K
Sbjct: 805 PTVEEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 43.6 bits (104), Expect = 3e-05
Identities = 10/43 (23%), Positives = 16/43 (37%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
K EK + K KK K ++ K++ +K K
Sbjct: 816 EKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 43.6 bits (104), Expect = 4e-05
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K +K + K KK K K K++ +K K
Sbjct: 817 KPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEKDGKA 858
Score = 42.9 bits (102), Expect = 6e-05
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
EK +K + K +K K +K K++ +K
Sbjct: 814 LAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVASEK 854
Score = 38.6 bits (91), Expect = 0.002
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Query: 156 VANSHRRRRKKEKKKKEEKK--KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
+ + R+ EE +K +K + + KK K +K K++ +
Sbjct: 792 ANATLPKGRETRAPTVEEALELLAEKPEKLRYLADAPAKDPAGKKAAVKFSRKTKQQYVA 851
Query: 214 RK 215
+
Sbjct: 852 SE 853
>gnl|CDD|220252 pfam09468, RNase_H2-Ydr279, Ydr279p protein family (RNase H2
complex component). RNases H are enzymes that
specifically hydrolyse RNA when annealed to a
complementary DNA and are present in all living
organisms. In yeast RNase H2 is composed of a complex of
three proteins (Rnh2Ap, Ydr279p and Ylr154p), this
family represents the homologues of Ydr279p. It is not
known whether non yeast proteins in this family fulfil
the same function.
Length = 287
Score = 45.4 bits (108), Expect = 7e-06
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
++R+ E+ + + + +KK+K K+ KKKK K+ K K KK K KKI
Sbjct: 233 KKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKKI 283
Score = 40.0 bits (94), Expect = 4e-04
Identities = 18/50 (36%), Positives = 29/50 (58%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
++R +E + E + +KK+K K++ KKKK ++ K K KK K KK
Sbjct: 233 KKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
Score = 38.9 bits (91), Expect = 0.001
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ +KKK+E ++ + + + + K+K KE+ KKKK K+ K K KK
Sbjct: 229 ESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKESKGVKALKKV 275
Score = 32.7 bits (75), Expect = 0.10
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKK------KEKKKKKKKKKKKKKKKKKKKI 212
+ K E K K K+ KK K++ E + +KK+K K++ KKKK K
Sbjct: 206 DLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKKPKE 265
Query: 213 MRKEEN 218
+ +
Sbjct: 266 SKGVKA 271
Score = 32.7 bits (75), Expect = 0.11
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + + K +K K+ KKKK++ ++ + + + +KK+K K++ KKKK
Sbjct: 204 PPDLYKELLKSLLIPEFKPLDKYLKESKKKKRETEEDVEAAESRAEKKRKSKEEIKKKK 262
Score = 27.7 bits (62), Expect = 4.3
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKK 190
+ + + +KKK +E K K KK KK
Sbjct: 246 SRAEKKRKSKEEIKKKKPKESKGVKALKKVVAKGMKK 282
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 44.3 bits (105), Expect = 1e-05
Identities = 28/50 (56%), Positives = 39/50 (78%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K+ + ++EEKK+KKKKK+ KK KK+KK+KK+K + K KKKKKKKK
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKK 191
Score = 43.6 bits (103), Expect = 2e-05
Identities = 29/52 (55%), Positives = 38/52 (73%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ + E+++K+EKKKKK+ KK+KK KK KKEK + K KKKKKKKKKK
Sbjct: 142 KVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 41.6 bits (98), Expect = 9e-05
Identities = 29/63 (46%), Positives = 42/63 (66%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
S+ + K EK+ + E+++KK+KKKKK+ KK+KKEKK KK+K + K KKKKK
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Query: 213 MRK 215
+K
Sbjct: 190 KKK 192
Score = 39.7 bits (93), Expect = 4e-04
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ K +KE + ++++KK+KKK K+ KKEKK+KK KK+K + K KK +K++
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKK 191
Score = 37.8 bits (88), Expect = 0.001
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
V ++ +KK+K+ K+EKK+KK KK+K K K+KKKKKKKK
Sbjct: 145 KEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKKKKKK 193
Score = 37.8 bits (88), Expect = 0.001
Identities = 22/54 (40%), Positives = 38/54 (70%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+KE K EK+ + ++++KK+ KKKK+ KK+KK+KK KK+K + K +K++
Sbjct: 136 EKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKKK 189
Score = 37.8 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ E +KE K +K+ + ++ +KK+K+KKK+ KK+KK+KK KK+K + K
Sbjct: 131 ESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 36.6 bits (85), Expect = 0.004
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
P +++ + +K+ + ++++KK KKKKKE KK+KK+KK KK+K + K +
Sbjct: 125 PSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSK 184
Query: 215 K 215
K
Sbjct: 185 K 185
Score = 35.5 bits (82), Expect = 0.009
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ +K+ K +K+ + +++ KK+KK+KK+ KK+KK+KK KK+K +
Sbjct: 131 ESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 35.5 bits (82), Expect = 0.011
Identities = 21/51 (41%), Positives = 35/51 (68%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
E + E++ K +K+ + +++KKEKKKKK+ KK+KK+KK KK+ M +
Sbjct: 130 SESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEP 180
Score = 30.5 bits (69), Expect = 0.47
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ E + +K+ K + + + +E++KK+KKKKK+ KK+KK+K +KE+
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKM 177
Score = 28.5 bits (64), Expect = 2.3
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ E + +K+ K K+ + E+++KK+KKKKK+ KK+KK+ K+E
Sbjct: 123 GPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKE 175
>gnl|CDD|236944 PRK11642, PRK11642, exoribonuclease R; Provisional.
Length = 813
Score = 45.1 bits (107), Expect = 1e-05
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 157 ANSHRRRRKKEKK-------KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
RR+ K+ + E+K K K KK + KK K +K K K+ KK
Sbjct: 750 KGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKK 809
Query: 210 KK 211
K
Sbjct: 810 KV 811
Score = 42.4 bits (100), Expect = 1e-04
Identities = 15/43 (34%), Positives = 21/43 (48%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
R ++K K + KK +K KK K +K K K+ KKK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 41.3 bits (97), Expect = 2e-04
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 7/66 (10%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK-------K 205
D +RR+ +K E + +KK K KK +K KK K +K K
Sbjct: 745 GDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAK 804
Query: 206 KKKKKK 211
+ KKK
Sbjct: 805 RAAKKK 810
Score = 40.1 bits (94), Expect = 6e-04
Identities = 17/47 (36%), Positives = 22/47 (46%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
+S R KK K K +K +K KK K +K K K+ KKK
Sbjct: 766 DSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 39.7 bits (93), Expect = 7e-04
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
R +K+ K K KK +K KK +K K K+ KKK
Sbjct: 770 RGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 39.3 bits (92), Expect = 0.001
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 10/59 (16%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNK-------KKKKEKKKKKKKKKKKKKKK---KKKKI 212
R+K KK KK K+++ KK + +K+ K K KK +K KK K +KI
Sbjct: 739 REKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKI 797
Score = 38.6 bits (90), Expect = 0.002
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
+RR+ KK E + +KK K K KK+ +K KK K +K K R
Sbjct: 748 GKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKR 805
Score = 37.0 bits (86), Expect = 0.006
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKE----------KKKKKKKKKKKKKKKK 208
S R R K +E+ KK KK K ++ K+ +KK K K KK +K
Sbjct: 727 SERAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARK 786
Query: 209 KKK 211
KK
Sbjct: 787 AKK 789
Score = 35.9 bits (83), Expect = 0.015
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 9/61 (14%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK---------KKKKKKKKKKKKKKKKIMR 214
R K ++K KK KK K+++ KK + +KK K K KK + +
Sbjct: 729 RAPRNVGKTAREKAKKGDAGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAK 788
Query: 215 K 215
K
Sbjct: 789 K 789
Score = 32.0 bits (73), Expect = 0.23
Identities = 13/47 (27%), Positives = 19/47 (40%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
D ++ + K KK K KK K +K K ++ KKK
Sbjct: 766 DSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
Score = 31.6 bits (72), Expect = 0.31
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+P + ++ K K K++ +K KK K + K K K+ KKK
Sbjct: 764 EPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQ-KIAAATKAKRAAKKKVA 812
Score = 30.9 bits (70), Expect = 0.50
Identities = 13/48 (27%), Positives = 17/48 (35%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
P + + K KK + KK K +K K K KKK
Sbjct: 765 PDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAAATKAKRAAKKKVA 812
>gnl|CDD|219868 pfam08496, Peptidase_S49_N, Peptidase family S49 N-terminal. This
domain is found to the N-terminus of bacterial signal
peptidases of the S49 family (pfam01343).
Length = 154
Score = 42.9 bits (102), Expect = 2e-05
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
KKE K E+ +KK +K K K KKK K+++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 41.0 bits (97), Expect = 9e-05
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
KK+ K +K KK +K K K +KKK KK++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 40.6 bits (96), Expect = 1e-04
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K+ K+ E KK+ K K +KK +K K K +KKK KK++ K
Sbjct: 52 KDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKP 97
Score = 40.2 bits (95), Expect = 2e-04
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
K+E K +K +KK + K K EKKK KK++ K +
Sbjct: 65 KKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 39.8 bits (94), Expect = 2e-04
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
+ + +++ K +K +KK K K K +KKK KK++ K +
Sbjct: 53 DLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 38.3 bits (90), Expect = 9e-04
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
N + K+ + KK+ K +K + K +K + K +KKK KK++ K +
Sbjct: 48 NEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAKKEEPKPR 98
Score = 34.8 bits (81), Expect = 0.010
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 10/65 (15%)
Query: 161 RRRRKKEKKK----------KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+++K +K + K+ K+ + KK K ++ +KK +K K K +KKK K
Sbjct: 32 AQKKKGKKGELEITDLNEEYKDLKESLEAALLDKKELKAWEKAEKKAEKAKAKAEKKKAK 91
Query: 211 KIMRK 215
K K
Sbjct: 92 KEEPK 96
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 43.8 bits (104), Expect = 3e-05
Identities = 14/50 (28%), Positives = 37/50 (74%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ +E++++E ++KK++KKK+++ K K ++++K ++K++KK+ +K
Sbjct: 273 LKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQARK 322
Score = 40.3 bits (95), Expect = 3e-04
Identities = 18/65 (27%), Positives = 41/65 (63%), Gaps = 10/65 (15%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK----------KKKKKKKKK 210
R+ K ++++EEK K ++++++ ++KKE+KKK++++ +K ++K++K
Sbjct: 258 LRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERK 317
Query: 211 KIMRK 215
K RK
Sbjct: 318 KQARK 322
Score = 30.3 bits (69), Expect = 0.62
Identities = 11/47 (23%), Positives = 28/47 (59%), Gaps = 4/47 (8%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKK----KKKKKKKKKIMRKEEN 218
+ +K K +++++EK K ++++ ++KK++KKK R+ +
Sbjct: 254 SPEVLRKVDKTREEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKL 300
>gnl|CDD|235322 PRK04950, PRK04950, ProP expression regulator; Provisional.
Length = 213
Score = 43.0 bits (102), Expect = 3e-05
Identities = 13/50 (26%), Positives = 28/50 (56%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+R +++ KK E +K+K +++ K K K +KK+K + +K + +
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVS 162
Score = 42.2 bits (100), Expect = 6e-05
Identities = 16/59 (27%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 160 HRRRRKKEKKKK-EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
H R++ +E K K + ++ +++ KK++ +K+K ++++K K K +KK+K + + E
Sbjct: 98 HARKQLEEAKAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEP 156
Score = 42.2 bits (100), Expect = 6e-05
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+R +++ KK+E +K+K ++++ K K +KK+K + +K + +
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPV 161
Score = 42.2 bits (100), Expect = 6e-05
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+R ++ KK++ +K+K ++++K K K KK+K + +K + + I
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDI 164
Score = 39.9 bits (94), Expect = 3e-04
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K K + + +++ KK++ K+K +++K K K +KK+K + + +
Sbjct: 107 KAKVQAQRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHT 159
Score = 39.1 bits (92), Expect = 6e-04
Identities = 11/54 (20%), Positives = 30/54 (55%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ E++ K+ + +K+K ++ +K K + +KK+K + +K + + + E
Sbjct: 113 QRAEQQAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISE 166
Score = 34.9 bits (81), Expect = 0.018
Identities = 9/52 (17%), Positives = 28/52 (53%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ ++++ +KE+ ++++K K K +KK+K + +K + + + +
Sbjct: 118 QAKKREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTV 169
Score = 34.9 bits (81), Expect = 0.018
Identities = 10/51 (19%), Positives = 23/51 (45%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+R EK+K +++K K K +K +K + +K + + + +
Sbjct: 121 KREAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQ 171
Score = 34.1 bits (79), Expect = 0.033
Identities = 8/52 (15%), Positives = 22/52 (42%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
R +++K ++K K K +KK K + ++ + + + + +
Sbjct: 122 REAAGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAV 173
Score = 31.4 bits (72), Expect = 0.25
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K++ ++E K K K +KK+K + +K E + + + K+
Sbjct: 128 KEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKV 175
Score = 30.7 bits (70), Expect = 0.44
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K +++++ K K +KK+K + +K + + + + K K
Sbjct: 129 EKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVK 176
Score = 29.5 bits (67), Expect = 0.94
Identities = 8/48 (16%), Positives = 20/48 (41%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ +++K + K +KK+K + K + + + + K K
Sbjct: 129 EKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVK 176
Score = 26.8 bits (60), Expect = 6.9
Identities = 10/52 (19%), Positives = 23/52 (44%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
A + ++E+K K + +KK+K + +K + + + + K K
Sbjct: 125 AGEKEKAPRRERKPKPKAPRKKRKPRAQKPEPQHTPVSDISELTVGQAVKVK 176
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 42.4 bits (100), Expect = 3e-05
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K KK+ EEK+K K KKKK K KK K + KK KK K +KK +K+ + E+
Sbjct: 69 EEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 40.8 bits (96), Expect = 1e-04
Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E+K+K + KKKK KKKK K+K KK +KK K +KK +K+ + K + + K +
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYS 130
Score = 40.1 bits (94), Expect = 3e-04
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKK----KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
D ++++K+ ++ E+ KK K+K K KKK KKKK+K K KK KK K +
Sbjct: 52 IYDAEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSE 111
Query: 208 KKKKIMRKEEN 218
KK + +++
Sbjct: 112 KKDEKEAEDKL 122
Score = 39.3 bits (92), Expect = 5e-04
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K++ K K++K KKKK K K K KK +K +KK +K+ + K + K
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTK 127
Score = 38.5 bits (90), Expect = 9e-04
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+++ K +KKK ++KK K K KK K K ++K +K+ + K + K +
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSET 132
Score = 38.1 bits (89), Expect = 0.001
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + KK+K KK++ K K KK KK +K +KK++K+ + K + K +
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133
Score = 38.1 bits (89), Expect = 0.001
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+K+K K ++KK KKKK K K K KK+ K +KK +K+ + K + E
Sbjct: 80 EKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETL 133
Score = 35.8 bits (83), Expect = 0.007
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
KK KKKK++ K KK KK K++KK +++ + K + K + +
Sbjct: 89 KKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTL 136
Score = 31.6 bits (72), Expect = 0.17
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+KK+ K K++K KK K +KK++K+ ++K + K +
Sbjct: 92 KKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLST 135
Score = 30.8 bits (70), Expect = 0.38
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K+K KK++KK K +KK +K + K E K + + K +
Sbjct: 96 DKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPRK 143
Score = 28.9 bits (65), Expect = 1.3
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KK+K K ++ KK K +KK K+ + + + K + + K
Sbjct: 94 KKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELK 140
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 43.4 bits (103), Expect = 4e-05
Identities = 14/73 (19%), Positives = 21/73 (28%)
Query: 146 EGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
+ D + KK+ K + K KKK + KK +KK K
Sbjct: 57 IFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDD 116
Query: 206 KKKKKKIMRKEEN 218
K +
Sbjct: 117 DLNYVKDIDVLNQ 129
Score = 41.9 bits (99), Expect = 1e-04
Identities = 17/69 (24%), Positives = 25/69 (36%)
Query: 143 KTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+ ++ + I S V ++ KKK + K K KK K E KK +KK
Sbjct: 50 EQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKK 109
Query: 203 KKKKKKKKK 211
K
Sbjct: 110 NALDKDDDL 118
Score = 36.9 bits (86), Expect = 0.005
Identities = 13/67 (19%), Positives = 20/67 (29%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + K + + KKK K K K KKK K + KK +
Sbjct: 48 TPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAE 107
Query: 212 IMRKEEN 218
+
Sbjct: 108 KKNALDK 114
Score = 36.1 bits (84), Expect = 0.011
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ ++E KKK KK K K+K +++ K+ + KKK ++ ++
Sbjct: 8 AELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQV 55
Score = 35.7 bits (83), Expect = 0.012
Identities = 14/69 (20%), Positives = 21/69 (30%)
Query: 143 KTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+ +E P + + KKK K K + KKK K +
Sbjct: 40 EALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDE 99
Query: 203 KKKKKKKKK 211
KK +K
Sbjct: 100 LDSSKKAEK 108
Score = 35.7 bits (83), Expect = 0.012
Identities = 9/66 (13%), Positives = 21/66 (31%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++ + + + + KKK K + +KK +K+ K K
Sbjct: 69 ATESDIPKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLN 128
Query: 212 IMRKEE 217
++
Sbjct: 129 QADDDD 134
Score = 35.4 bits (82), Expect = 0.017
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K + EE+ KKK KK K+K K K++ K+ + KKK ++
Sbjct: 7 KAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIF 58
Score = 35.4 bits (82), Expect = 0.019
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K E +EE KKK KK K K K++ K+ + KKK ++
Sbjct: 7 KAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQID 53
Score = 35.0 bits (81), Expect = 0.025
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K E +++ KKK KK K K K K++ K+ + KKK + ++
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQV 55
Score = 34.6 bits (80), Expect = 0.036
Identities = 11/57 (19%), Positives = 17/57 (29%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ K K KKK K + K +KK K K + ++
Sbjct: 79 TKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDD 135
Score = 33.8 bits (78), Expect = 0.051
Identities = 10/62 (16%), Positives = 17/62 (27%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
P + + K KK+ K + KK +K K+ K +
Sbjct: 75 PKKKTKTAAKAAAAKAPAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDD 134
Query: 212 IM 213
Sbjct: 135 DD 136
Score = 33.8 bits (78), Expect = 0.055
Identities = 12/47 (25%), Positives = 23/47 (48%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ +++ +KK KK K K KE+ K+ + KKK ++ +
Sbjct: 8 AELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQ 54
Score = 33.4 bits (77), Expect = 0.074
Identities = 14/53 (26%), Positives = 25/53 (47%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K + +++ KKK KK K K K K++ K+ + KKK + + +
Sbjct: 4 ASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVL 56
Score = 32.7 bits (75), Expect = 0.12
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + E++ KKK KK K K K++ K+ + KKK ++I +
Sbjct: 5 STKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIF 58
Score = 31.9 bits (73), Expect = 0.23
Identities = 18/87 (20%), Positives = 25/87 (28%), Gaps = 23/87 (26%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKK-----------------------KNKKK 189
+ + + K KEE K+ + KKK + K
Sbjct: 17 KKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDATESDIPK 76
Query: 190 KKEKKKKKKKKKKKKKKKKKKKIMRKE 216
KK K K K KKK K +
Sbjct: 77 KKTKTAAKAAAAKAPAKKKLKDELDSS 103
Score = 31.1 bits (71), Expect = 0.42
Identities = 11/55 (20%), Positives = 19/55 (34%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++K ++ + K + + KKK K K K K K+E
Sbjct: 45 KKKTPEQIDQVLIFLSGMVKDTDDATESDIPKKKTKTAAKAAAAKAPAKKKLKDE 99
Score = 30.0 bits (68), Expect = 0.95
Identities = 13/56 (23%), Positives = 25/56 (44%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
S + E++ K++ KK K K K K++ K+ + KKK ++ +
Sbjct: 2 TTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLI 57
Score = 30.0 bits (68), Expect = 0.97
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K + ++ KKK +K K K K K++ K+ +
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALES 44
Score = 30.0 bits (68), Expect = 1.1
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + +++ KKK KK + K K K++ K+ + K
Sbjct: 1 MTTASTKAELAAEEEAKKKLKKLAAKSKSKGFITKEEIKEALESK 45
Score = 29.2 bits (66), Expect = 1.7
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++ KKK ++ K K K ++ K+ + KKK ++ + M K+
Sbjct: 13 EEEAKKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKD 65
Score = 28.4 bits (64), Expect = 3.2
Identities = 13/53 (24%), Positives = 22/53 (41%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+K KK K K K K+ K+ E KKK ++ + + ++
Sbjct: 17 KKKLKKLAAKSKSKGFITKEEIKEALESKKKTPEQIDQVLIFLSGMVKDTDDA 69
Score = 28.4 bits (64), Expect = 3.2
Identities = 10/48 (20%), Positives = 14/48 (29%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+KK K+E KK +KK K K +
Sbjct: 91 PAKKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDD 138
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 43.2 bits (102), Expect = 4e-05
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+R ++ K+K K K K ++ K ++ + ++KKK+KK K +++ +
Sbjct: 347 EKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 42.8 bits (101), Expect = 6e-05
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+R +K K+K + K K ++ KK + + +KKK+KK K +++ +
Sbjct: 347 EKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 42.0 bits (99), Expect = 1e-04
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R + EK+ ++ K+K K K K ++ KKE+ + ++KKK+KK K +++
Sbjct: 343 REELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERR 391
Score = 42.0 bits (99), Expect = 1e-04
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
S +++ E++ +K K+K K K K E+ KK++ + ++KKK+KK +
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERR 391
Score = 40.8 bits (96), Expect = 2e-04
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+++ EK+ +K K+K K K K ++ KK++ + ++KKK+KK +
Sbjct: 334 SGEPDGISLREELEKRIEKLKEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERR 391
Score = 35.8 bits (83), Expect = 0.010
Identities = 11/42 (26%), Positives = 23/42 (54%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+ K K K E+ KK++ + ++ KK+KK K +++ +
Sbjct: 354 KEKPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
Score = 33.1 bits (76), Expect = 0.084
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
+ K ++ K+E+ + ++KKK+K K ++ +
Sbjct: 356 KPPKPPTKAKPERDKKERPGRYRRKKKEKKAKSERRGLQN 395
>gnl|CDD|240388 PTZ00372, PTZ00372, endonuclease 4-like protein; Provisional.
Length = 413
Score = 43.2 bits (102), Expect = 5e-05
Identities = 27/54 (50%), Positives = 32/54 (59%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KKE K E KKK +KKKKKKK KK+ K + + K K KK KK KK K +
Sbjct: 58 KKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKP 111
Score = 42.0 bits (99), Expect = 1e-04
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ KKK E+KKKKKK+KK+ K++ + K K KK KK KKK K K +N
Sbjct: 64 NESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDN 117
Score = 40.5 bits (95), Expect = 3e-04
Identities = 24/53 (45%), Positives = 32/53 (60%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K + KK+ +KKKKKKK+KK+ K + + K K KK KK KKK K E+
Sbjct: 62 KNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNED 114
Score = 40.1 bits (94), Expect = 5e-04
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++E K KK KK+ K KKK EKKKKKKK+KK+ K + + K+ K
Sbjct: 44 EEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPK 97
Score = 40.1 bits (94), Expect = 5e-04
Identities = 21/47 (44%), Positives = 30/47 (63%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+E+ K KK KK+ K N+ KKK +KKKKKKK+KK+ K + +
Sbjct: 42 FSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGE 88
Score = 39.7 bits (93), Expect = 7e-04
Identities = 21/61 (34%), Positives = 29/61 (47%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ +EE K KK K + K E KKK +KKKKKKK+KK+ K + +
Sbjct: 31 VLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETK 90
Query: 218 N 218
Sbjct: 91 L 91
Score = 39.3 bits (92), Expect = 0.001
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+KK +KKK++KK+KK+ K + + K K KK KK KKK K K + +
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDV 115
Score = 38.9 bits (91), Expect = 0.001
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KK+KK+ + + KKK +KKKK KK+KKE K + + K K KK KK
Sbjct: 55 KKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKK 101
Score = 38.5 bits (90), Expect = 0.002
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K++ K E KKK +KKKKKK +KK+ + + + K K KK KK K
Sbjct: 57 DKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKK 104
Score = 38.2 bits (89), Expect = 0.002
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
V + +++ + KK KK++K + +KK +KKKKKKK+KK+ K +
Sbjct: 31 VLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSE 86
Score = 37.4 bits (87), Expect = 0.004
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+K+KKKK+EKK+ K + + K K K+ KK KKK K K + K
Sbjct: 71 EKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNK 121
Score = 36.6 bits (85), Expect = 0.006
Identities = 19/70 (27%), Positives = 33/70 (47%)
Query: 149 FIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ S + ++ K +K KK+ K + K K +KK+KKKK+KK+ K + + K
Sbjct: 31 VLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETK 90
Query: 209 KKKIMRKEEN 218
K+
Sbjct: 91 LGFKTPKKSK 100
Score = 36.6 bits (85), Expect = 0.006
Identities = 21/47 (44%), Positives = 29/47 (61%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K +K+ K + KKK +KKKKK K+KK+ K + + K K KK KK
Sbjct: 56 KDKKEDKNNESKKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKT 102
Score = 36.6 bits (85), Expect = 0.007
Identities = 21/56 (37%), Positives = 29/56 (51%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+++KK+K+KKE K + + K K KK KK KKK K K + KI E
Sbjct: 72 KKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELAE 127
Score = 30.1 bits (68), Expect = 0.89
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 6/67 (8%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK------KKKKKK 205
+++ KKE K + E K K KK K KKK K K + K +
Sbjct: 67 KKKSEKKKKKKKEKKEPKSEGETKLGFKTPKKSKKTKKKPPKPKPNEDVDNAFNKIAELA 126
Query: 206 KKKKKKI 212
+K I
Sbjct: 127 EKSNVYI 133
Score = 27.4 bits (61), Expect = 7.0
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 148 IFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK------- 200
+ + + + K+ + + K KK KK
Sbjct: 7 MILSFFSGTTQKSKLQPISYIYSNVLVLSKEILSTFSEEENKVATTSTKKDKKEDKNNES 66
Query: 201 KKKKKKKKKKKIMRKEEN 218
KKK +KKKKKK +KE
Sbjct: 67 KKKSEKKKKKKKEKKEPK 84
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 40.8 bits (96), Expect = 9e-05
Identities = 23/50 (46%), Positives = 39/50 (78%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+++++EKK+K+E+K KK+ K++K K+KKK+KKK KK KK++K+ K
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 37.3 bits (87), Expect = 0.001
Identities = 23/50 (46%), Positives = 38/50 (76%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+++R+++K+K EEK KK+ K++KK +KKKK+KK KK KK++K+ K
Sbjct: 69 QQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSS 118
Score = 36.9 bits (86), Expect = 0.002
Identities = 25/52 (48%), Positives = 41/52 (78%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K++ + EE ++K+++KK+K +K K++ K++KKK+KKKKKKK KK +KEE
Sbjct: 60 KKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEE 111
Score = 36.2 bits (84), Expect = 0.004
Identities = 22/57 (38%), Positives = 40/57 (70%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R ++K K+E + ++ ++K+++ K+K +EK KK+ K++KKK+KKKKK K+ N
Sbjct: 51 RLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGN 107
Score = 30.4 bits (69), Expect = 0.32
Identities = 20/57 (35%), Positives = 38/57 (66%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ +K+ K++K+++KKKKKKK KK NKK++KE K ++ ++++ ++ K E
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVE 138
Score = 29.6 bits (67), Expect = 0.70
Identities = 18/56 (32%), Positives = 37/56 (66%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ K++ K+++KK+KKKKKKK K KK+EK+ K ++ ++++ ++ ++E
Sbjct: 82 KTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPV 137
>gnl|CDD|220237 pfam09428, DUF2011, Fungal protein of unknown function (DUF2011).
This is a family of fungal proteins whose function is
unknown.
Length = 130
Score = 40.7 bits (96), Expect = 9e-05
Identities = 19/60 (31%), Positives = 41/60 (68%), Gaps = 2/60 (3%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKK--KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
H + +KE +++EKKKK+K+ KK++ + ++E+ K++ +K+K+ +K ++KK R+
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRR 124
Score = 38.4 bits (90), Expect = 5e-04
Identities = 16/51 (31%), Positives = 37/51 (72%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R + KK+K+K+ KK++ + +++ K++ EK+K+ +K ++KK K+++K+
Sbjct: 77 REKEKKKKRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKE 127
Score = 36.9 bits (86), Expect = 0.002
Identities = 14/47 (29%), Positives = 35/47 (74%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+RK+ KK+ + ++++ K++ +K+K+ +K ++KK K+++K+K+K
Sbjct: 84 KRKRPGKKRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 34.9 bits (81), Expect = 0.008
Identities = 12/40 (30%), Positives = 30/40 (75%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
+RR +++ K++ +K+K+ +KN++KK ++++K+K+K
Sbjct: 91 KRRIALRLRRERTKERAEKEKRTRKNREKKFKRRQKEKEK 130
Score = 27.6 bits (62), Expect = 2.7
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
KK N K +KE ++K+KKKK+K+ KK++I +
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRL 98
Score = 26.9 bits (60), Expect = 4.4
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKK 190
RR R KE+ +KE++ +K ++KK K+ +K+K
Sbjct: 98 LRRERTKERAEKEKRTRKNREKKFKRRQKEK 128
Score = 26.5 bits (59), Expect = 6.5
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KK K +K+ ++K++KKK+K+ KK++ + ++ KE
Sbjct: 65 KKHNAKVEKELLREKEKKKKRKRPGKKRRIALRLRRERTKER 106
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 41.8 bits (98), Expect = 2e-04
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R+KK+++K +EK+ KK K +K+ K K + ++ KK +KK +K ++EN
Sbjct: 20 RKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDEN 75
Score = 38.0 bits (88), Expect = 0.003
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R + E +KK +++ ++KKKK+ K K+KE KK K +K+ K K + ++
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQ 51
Score = 30.6 bits (69), Expect = 0.63
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E +KK +++ + KKKK+EK K+K+ KK K +K+ K ++ ++
Sbjct: 6 SEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQA 52
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 41.7 bits (97), Expect = 2e-04
Identities = 13/56 (23%), Positives = 30/56 (53%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+++ +E KKK + KKK ++ KK + K E + + + ++K + + ++E
Sbjct: 1321 KKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
Score = 40.9 bits (95), Expect = 3e-04
Identities = 12/55 (21%), Positives = 29/55 (52%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
A+ +++ ++ KKK + KKK ++ KK K + + + + ++K + +K
Sbjct: 1317 ADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEK 1371
Score = 40.9 bits (95), Expect = 3e-04
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+++ +E KK +E KKK ++ KKK + KKK ++ KK + K + + E
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAE 1363
Score = 40.9 bits (95), Expect = 4e-04
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
A +++ KKK EE KK + K + + + ++K + +KKK++ KK
Sbjct: 1324 AEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Score = 39.7 bits (92), Expect = 9e-04
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A +++ + KK KKK + KKK + KKK E KKK ++ KK + KKK + +K
Sbjct: 1400 AEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKA 1459
Query: 217 EN 218
E
Sbjct: 1460 EE 1461
Score = 39.4 bits (91), Expect = 0.001
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
A ++ + +KK +E KKK KKK + KK E K + + + + ++K
Sbjct: 1311 AEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Score = 39.4 bits (91), Expect = 0.001
Identities = 15/60 (25%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK----KKKKKIMRKEE 217
+++ +E KK E K + + + + +++ + +KKK++ KKK KKK + +K +
Sbjct: 1335 KKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKAD 1394
Score = 39.4 bits (91), Expect = 0.001
Identities = 21/55 (38%), Positives = 35/55 (63%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+++ +E KK +E KKK ++ KK + KKK E+ KK + KKK ++ KK +K+
Sbjct: 1437 KKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
Score = 39.0 bits (90), Expect = 0.001
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++ +EKKK +E KKK ++ KK KKK E+ KKK KKK ++ KK
Sbjct: 1296 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKA 1344
Score = 39.0 bits (90), Expect = 0.001
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+++ +E KK +E KKK ++ KKK ++ KK + KKK + KK ++ KK +K E
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAE 1531
Score = 38.2 bits (88), Expect = 0.002
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+D + + EKKK+E KKK KKK + KKK E KKK ++ KKK + KK
Sbjct: 1356 ADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAA 1415
Query: 213 MRKE 216
+K+
Sbjct: 1416 AKKK 1419
Score = 38.2 bits (88), Expect = 0.003
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++ KKK +E KKK ++KKK KKK E+ KK + KKK ++ KK + +K+
Sbjct: 1411 KKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKK 1465
Score = 38.2 bits (88), Expect = 0.003
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A + + + +KKKEE KKK KKK +KKK ++ KKK ++ KKK + KK K+
Sbjct: 1359 AEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKK 1418
Query: 217 E 217
+
Sbjct: 1419 K 1419
Score = 38.2 bits (88), Expect = 0.003
Identities = 23/60 (38%), Positives = 37/60 (61%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A+ +++ +++KKK +E KK KKK KKK E+KKK + KKK ++ KK +K+
Sbjct: 1393 ADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKK 1452
Score = 37.8 bits (87), Expect = 0.003
Identities = 19/57 (33%), Positives = 31/57 (54%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+++ + KKK EE KK + KKK + KKK + KKK ++ KK + K + +
Sbjct: 1301 KKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAAD 1357
Score = 37.8 bits (87), Expect = 0.003
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K E + ++ + ++K + KKK++ KKK KKK ++KKK + +K E
Sbjct: 1348 AKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
Score = 37.8 bits (87), Expect = 0.003
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+++ +EKKK +E KKK ++ KKK ++ KK KKK + KKK ++KKK
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKK 1432
Score = 37.8 bits (87), Expect = 0.004
Identities = 24/61 (39%), Positives = 38/61 (62%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A + +++ + KKK EEKKK + KKK + KK E KKK ++ KK ++ KKK + +K
Sbjct: 1413 AAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKA 1472
Query: 217 E 217
+
Sbjct: 1473 D 1473
Score = 37.8 bits (87), Expect = 0.004
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+++ +EKKK +E KKK ++ KK KKK E+ KK ++ KKK ++ KK +K+
Sbjct: 1424 KKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Score = 37.8 bits (87), Expect = 0.004
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+++ +E KK +E KKK ++ KK KKK E+ KKK + KK + KKK
Sbjct: 1463 KKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 37.4 bits (86), Expect = 0.004
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+++ + KKK EE KK + KKK + KK +E KKK ++ KK + KKK + +K +
Sbjct: 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKAD 1486
Score = 37.4 bits (86), Expect = 0.005
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++ +EKKK +E KK ++KKK + KKK +E KK + KKK ++ KKK +K+
Sbjct: 1284 KKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKK 1337
Score = 37.4 bits (86), Expect = 0.005
Identities = 14/55 (25%), Positives = 30/55 (54%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
A++ +++ ++ KK E K + + + ++K + +KKK++ KKK KK
Sbjct: 1331 ADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKK 1385
Score = 37.4 bits (86), Expect = 0.005
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+++ +E KK EE KKK ++ KK KKK E+ KK + KKK ++ KKK
Sbjct: 1450 KKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 37.0 bits (85), Expect = 0.005
Identities = 20/65 (30%), Positives = 34/65 (52%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ A + E + EEK + +KKK++ KK KKK ++KKK + KKK ++
Sbjct: 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
Query: 213 MRKEE 217
+K +
Sbjct: 1404 KKKAD 1408
Score = 37.0 bits (85), Expect = 0.006
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ + KKK EE KK + KKK + KKK ++ KK + KKK + KK + +K +
Sbjct: 1469 AKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKAD 1525
Score = 36.7 bits (84), Expect = 0.008
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++ + KKK EE KK ++ KKK + KK E KKK ++ KK + KKK + +K+
Sbjct: 1443 AKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKK 1498
Score = 36.7 bits (84), Expect = 0.009
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A ++ + +KK +E+KKK + KK KKK E KKK ++KKK + KKK + +K
Sbjct: 1387 AEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKA 1446
Query: 217 E 217
+
Sbjct: 1447 D 1447
Score = 36.7 bits (84), Expect = 0.009
Identities = 21/59 (35%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI--MRKEE 217
++ +++KKK EE KK ++ +KK KK+ ++ KK ++ KKK+ ++KKK ++K E
Sbjct: 1667 AKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAE 1725
Score = 36.3 bits (83), Expect = 0.011
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++ ++ KKK EE KK + KKK + KK E KKK ++ KKK + KK +K+
Sbjct: 1456 AKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 35.9 bits (82), Expect = 0.014
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ +++ E KKK E+ KK + KKK + KK E+ KKK ++ KK + KKK
Sbjct: 1427 AEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKK 1478
Score = 35.9 bits (82), Expect = 0.014
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+++ +E KKK ++ KK + KKK ++ KK E+ KK + KK ++ KK + + EE
Sbjct: 1489 KKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEE 1544
Score = 35.9 bits (82), Expect = 0.015
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ ++ E KKK E+ KK ++ KKK + KK ++ KKK ++ KK + KKK
Sbjct: 1440 AEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKK 1491
Score = 35.5 bits (81), Expect = 0.017
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ +++ KKK E+KKK + KKK + KKK + KK KKK + KKK
Sbjct: 1368 AAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKK 1426
Score = 35.5 bits (81), Expect = 0.020
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++K ++ KK E+KKK + KKK + KK ++ KKK ++ KKK KKK ++
Sbjct: 1289 KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKK 1343
Score = 35.5 bits (81), Expect = 0.020
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ ++ +E KKK E+ KK + KKK + KK ++ KKK ++ KKK + KK K++
Sbjct: 1453 AEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKK 1511
Score = 34.7 bits (79), Expect = 0.030
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ + KKK EE KKK + KK KKK ++ KK ++ KK + KK ++ + +E
Sbjct: 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538
Score = 34.3 bits (78), Expect = 0.048
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKE--KKKKKKKKKKKKKKKKKKKIMRKEE 217
+++ KKK EEKKK + KKK + KKK + KK KKK + KKK ++ + +E
Sbjct: 1377 KKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Score = 34.3 bits (78), Expect = 0.049
Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
RK ++ KK E+KKK + KK + KKK E KKK ++ KK + KKK + +K+
Sbjct: 1277 ARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKK 1330
Score = 34.3 bits (78), Expect = 0.053
Identities = 20/59 (33%), Positives = 33/59 (55%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ ++ E KKK E+ KKK + KK + KKK + KK ++ KK + KK + +K +
Sbjct: 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKAD 1537
Score = 34.0 bits (77), Expect = 0.058
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
A ++ ++ K K E+ KK ++ KKK + KK E+ +KK + KK+ ++ KK
Sbjct: 1649 AEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKA 1704
Score = 34.0 bits (77), Expect = 0.060
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K + KK+ + KK ++ KK ++ KK E+ KK + KK ++KKK ++ + EE
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEE 1556
Score = 34.0 bits (77), Expect = 0.070
Identities = 21/52 (40%), Positives = 37/52 (71%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+++ +EKKK EE KK +++ K K + KK+ ++ KKK ++ KK +++KKKI
Sbjct: 1708 KKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKI 1759
Score = 34.0 bits (77), Expect = 0.070
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKE--KKKKKKKKKKKKKKKKKKKIMRKEE 217
+++ + KKK EE KKK + KK KKK + KKK ++KKK + KKK ++ + +E
Sbjct: 1390 KKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
Score = 33.6 bits (76), Expect = 0.074
Identities = 22/59 (37%), Positives = 35/59 (59%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ R+ E KK EEKKK + KK ++ KK + KKK ++ KK + KKK ++ +K +
Sbjct: 1274 AEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKAD 1332
Score = 33.6 bits (76), Expect = 0.092
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K E+ +K ++ KK ++KKK KK +EKKK + KKK ++ KK + +K E
Sbjct: 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1325
Score = 33.2 bits (75), Expect = 0.098
Identities = 19/54 (35%), Positives = 36/54 (66%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
A +++ ++ KK +E++KK + KK+ + KK E+ KKK+ ++KKK ++ KK
Sbjct: 1670 AEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKK 1723
Score = 33.2 bits (75), Expect = 0.10
Identities = 20/61 (32%), Positives = 38/61 (62%), Gaps = 4/61 (6%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK----KKKKKKKKKKKKKIMRKE 216
+++ +EKKK EE KK +++ K K ++ KK ++ KKK KK ++ +KK + + ++
Sbjct: 1639 KKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEA 1698
Query: 217 E 217
E
Sbjct: 1699 E 1699
Score = 33.2 bits (75), Expect = 0.11
Identities = 19/51 (37%), Positives = 31/51 (60%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
A+ +++ ++ KKK +E KK + KKK KK +E KK + KK ++ KK
Sbjct: 1485 ADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
Score = 33.2 bits (75), Expect = 0.12
Identities = 19/60 (31%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK----KKKKKKKKKKKKKIMRKEE 217
++ ++++KK E KK+ ++ KK + KKKE ++KKK KK +++ K K ++ ++ E
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
Score = 32.4 bits (73), Expect = 0.17
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK---KKKKKKKKKKKKIMRKEE 217
++ +E KK EE KKK+ ++KKK + KK E++ K K KK+ ++ KKK + +K+E
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDE 1753
Score = 32.4 bits (73), Expect = 0.19
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++K ++ KK + KKK + KK + KK ++ KK ++ KK + KK ++ + +E
Sbjct: 1496 KKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADE 1550
Score = 32.4 bits (73), Expect = 0.20
Identities = 21/60 (35%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 162 RRRKKEKKKKEEKKKKKKKKK----KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ + KKK +E KK ++ KK KK + KK ++ KK ++KKK + KK +++ + EE
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEE 1562
Score = 32.4 bits (73), Expect = 0.22
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK----KKKKKKKKKKI 212
A ++ + +KK +E KKK + KK + KKK E KK ++ KK KK ++ KK
Sbjct: 1479 AEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADE 1538
Query: 213 MRKEE 217
+K E
Sbjct: 1539 AKKAE 1543
Score = 32.0 bits (72), Expect = 0.23
Identities = 20/51 (39%), Positives = 35/51 (68%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
++ +E KK +E KK ++KKK + KK ++ KK ++KKK ++ KK ++ K M
Sbjct: 1528 KKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNM 1578
Score = 32.0 bits (72), Expect = 0.27
Identities = 21/56 (37%), Positives = 41/56 (73%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ ++E K K E+ KK+ ++ KKK ++ KK++++KKK KK+++KK + +RKE+
Sbjct: 1722 KKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
Score = 31.6 bits (71), Expect = 0.32
Identities = 23/59 (38%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK---KKKKKKKKKKKKIMRKEE 217
++ ++EKKK E+ KKK+ ++KKK + KK E++ K K KK ++ KKK + +K E
Sbjct: 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAE 1684
Score = 31.6 bits (71), Expect = 0.39
Identities = 23/58 (39%), Positives = 36/58 (62%), Gaps = 4/58 (6%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK----KKKKKKKKKKKKKKKKIMRKEE 217
+K E+ KK ++ KK ++ KK KK +EKKK KK ++ KK ++KKK + +K E
Sbjct: 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
Score = 31.3 bits (70), Expect = 0.43
Identities = 22/60 (36%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 163 RRKKEKKKKEEKKKKKKKKK----KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++ +E KK +E KK ++ KK KK +KKK ++ KK ++ KK ++KKK ++ + EE+
Sbjct: 1516 KKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEED 1575
Score = 30.9 bits (69), Expect = 0.61
Identities = 21/61 (34%), Positives = 40/61 (65%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A + + +E KK+ E+ KKK ++ KK ++KKK KK+++KK ++ +K+K+ + +E
Sbjct: 1724 AEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEE 1783
Query: 217 E 217
E
Sbjct: 1784 E 1784
Score = 30.9 bits (69), Expect = 0.68
Identities = 21/53 (39%), Positives = 38/53 (71%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K+ K +E KK ++ K K ++ KK ++EKKK ++ KKK+ ++KKK + ++K E
Sbjct: 1604 EKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAE 1656
Score = 30.5 bits (68), Expect = 0.77
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
++ + +K +++EKK + KK+ + KK +E KKK+ ++KKK ++ KK + K
Sbjct: 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENK 1729
Score = 30.5 bits (68), Expect = 0.79
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A ++ ++ K K EE KK+ ++ KKK + KK E++KKK KK+++KK ++I +++
Sbjct: 1718 AEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEK 1777
Query: 217 E 217
E
Sbjct: 1778 E 1778
Score = 30.1 bits (67), Expect = 1.1
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ +E +K +E KK ++KKK + KK +++KK + KKK ++ KK + + EE
Sbjct: 1273 KAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1326
Score = 29.3 bits (65), Expect = 2.2
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 143 KTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
K E I + ++ + +E KK EE K K ++ KK + +KKK E+ KKK+ ++K
Sbjct: 1587 KKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEK 1646
Query: 203 KKKKKKKK 210
KK ++ KK
Sbjct: 1647 KKAEELKK 1654
Score = 29.0 bits (64), Expect = 2.5
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ R+ K ++ ++ + KK ++KKK ++ KK E+KKK + KKK ++ KK +K+
Sbjct: 1266 ARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKK 1323
Score = 29.0 bits (64), Expect = 2.6
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+++ ++ KK +EE K K ++ KK+ + KKK ++ KK +++KKK KK+ +K E
Sbjct: 1715 KKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAE 1771
Score = 28.6 bits (63), Expect = 3.4
Identities = 19/59 (32%), Positives = 34/59 (57%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+D + ++ E KK EEKKK + KK ++ KK +++KK ++ KK ++ K +K
Sbjct: 1524 ADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRK 1582
Score = 28.6 bits (63), Expect = 3.4
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
++K ++ KK E+ KK ++KKK + KK +E K +K ++ KK ++ +I
Sbjct: 1545 KKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARI 1594
Score = 28.2 bits (62), Expect = 4.5
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K E+KKK E+ KK ++ K +K ++ KK ++ + ++ K +++K M+ EE
Sbjct: 1558 KKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
Score = 28.2 bits (62), Expect = 4.5
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ +K EE KK ++ + ++ K ++EKK K ++ KK ++ K K + ++K E
Sbjct: 1575 DKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629
Score = 28.2 bits (62), Expect = 4.6
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+++ K E+ +K + KK + KKK E KK ++KKK + KKK ++ + +E
Sbjct: 1267 RRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADE 1319
Score = 27.8 bits (61), Expect = 5.6
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 163 RRKKEKKKKEEKKKKKKK---KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++K E+ KK E++ K K KK+ + KKK E+ KK +++KKK KK++ + EE
Sbjct: 1715 KKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEE 1772
Score = 27.4 bits (60), Expect = 7.3
Identities = 19/54 (35%), Positives = 38/54 (70%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K E+ K + ++ KK +++KKK ++ KK++ ++KKK ++ KK +++ KI EE
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEE 1666
Score = 27.4 bits (60), Expect = 7.8
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+K E+KKK ++ KK ++ KK + KKK +E KK ++ K +K ++ K +
Sbjct: 1540 KKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591
Score = 27.0 bits (59), Expect = 9.7
Identities = 18/54 (33%), Positives = 33/54 (61%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
R+ +E KK EE + ++ K ++ KK K E+ KK ++ K K ++ KK + +K+
Sbjct: 1581 RKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKK 1634
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
EE ++K+++K K K K K+ K K ++K+K K++K++K +R+ E
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEE 86
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
++++K+EEK K K K KK K K E+K+K K++K++K ++ ++
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEED 87
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/51 (33%), Positives = 31/51 (60%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
E ++KEE+K K K K K K K ++K+K K++K++K ++ + E+
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPED 91
Score = 39.6 bits (93), Expect = 5e-04
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ E+K++E+ K K K KK K K +EK+K K++K++K ++
Sbjct: 41 EDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Score = 39.3 bits (92), Expect = 7e-04
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++++ EEK+++K K K KK + K ++K+K K++K++K +
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLR 82
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/45 (33%), Positives = 31/45 (68%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E++ +E++++K K K K KK K K ++K+K K++K++K ++
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRE 83
Score = 37.7 bits (88), Expect = 0.002
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+E++ ++K+++K K K K KK K K ++K+K K++K+ E
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRE 83
Score = 37.3 bits (87), Expect = 0.003
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
E+ +++E++K K K K K K + ++K+K K++K++K ++ E
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPE 90
Score = 36.9 bits (86), Expect = 0.004
Identities = 15/47 (31%), Positives = 30/47 (63%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
EE+ ++K+++K K K K +K K K ++K+K K++K++ +E
Sbjct: 39 EEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELE 85
Score = 31.6 bits (72), Expect = 0.23
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
K K +K K KKKK K K
Sbjct: 194 KLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 30.4 bits (69), Expect = 0.60
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
EK K E+ K KKKK K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 30.0 bits (68), Expect = 0.79
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 186 NKKKKKEKKKKKKKKKKKKKKKK 208
N+K K EK K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAK 214
Score = 29.6 bits (67), Expect = 1.1
Identities = 12/31 (38%), Positives = 12/31 (38%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
K K EK K KKKK K K K
Sbjct: 194 KLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 29.2 bits (66), Expect = 1.3
Identities = 13/52 (25%), Positives = 30/52 (57%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ + + KK K K E+K+K K++K++K ++ +E + + +K + +K
Sbjct: 50 AKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRLRK 101
Score = 28.5 bits (64), Expect = 2.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 189 KKKEKKKKKKKKKKKKKKKKKKKI 212
+K K +K K KKKK K K K+
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKL 215
Score = 27.3 bits (61), Expect = 6.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKK 209
+K K +K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAK 214
Score = 26.9 bits (60), Expect = 8.1
Identities = 11/33 (33%), Positives = 12/33 (36%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+K K K K KKKK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 26.9 bits (60), Expect = 8.4
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+K K +K K K+KK K K K
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDD 224
Score = 26.5 bits (59), Expect = 9.0
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K K +K K KKKK K K K ++
Sbjct: 192 NEKLKAEKAAKGGKKKKGKAKAKLNVGGANDDDDD 226
>gnl|CDD|240246 PTZ00053, PTZ00053, methionine aminopeptidase 2; Provisional.
Length = 470
Score = 41.2 bits (97), Expect = 2e-04
Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 11/65 (16%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKK-----------KKEKKKKKKKKKKKKKKKKKKKIM 213
+ K++K++ K+K KKK KK+KK E ++ + K+ KKKKKKKKK
Sbjct: 8 NEVKQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKK 67
Query: 214 RKEEN 218
+K
Sbjct: 68 KKNLG 72
Score = 34.7 bits (80), Expect = 0.026
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 10/58 (17%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKN----------KKKKKEKKKKKKKKKKKKKKKKKKK 211
++++++ K++ KKK KK KK + +E + K+ KKKKKKKKKKKK
Sbjct: 11 KQQKQQNKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKK 68
Score = 33.9 bits (78), Expect = 0.050
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 17/69 (24%)
Query: 165 KKEKKKKEEKKKKKKK-----------------KKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K+K K++ KK KK + K+N KKKK+KKKKKKKK +
Sbjct: 17 NKQKGTKKKNKKSKKDVDDDDAFLAELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYD 76
Query: 208 KKKKIMRKE 216
+
Sbjct: 77 LAYDLPVVW 85
Score = 32.4 bits (74), Expect = 0.18
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ ++ E K+ KKKKKKK KKKKK +
Sbjct: 44 ISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSA 88
Score = 32.0 bits (73), Expect = 0.19
Identities = 14/52 (26%), Positives = 23/52 (44%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E + ++ + K+ KKKK KKKKK+KK + ++N
Sbjct: 42 ELISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDN 93
Score = 30.8 bits (70), Expect = 0.58
Identities = 15/45 (33%), Positives = 19/45 (42%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
E ++ E K+ KKKKKKKK KKKK +
Sbjct: 44 ISENQEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSA 88
Score = 29.3 bits (66), Expect = 1.5
Identities = 16/54 (29%), Positives = 23/54 (42%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++ + K+ KKKKKKKKKKKK + + +RK N
Sbjct: 48 QEAENKQNNKKKKKKKKKKKKKNLGEAYDLAYDLPVVWSSAAFQDNSHIRKLGN 101
Score = 28.1 bits (63), Expect = 4.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 184 KKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ K++K++ K+K KKK KK KK
Sbjct: 7 ENEVKQQKQQNKQKGTKKKNKKSKKD 32
Score = 27.4 bits (61), Expect = 6.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKK 205
+ + K+ K++ K+K KKK KK KK
Sbjct: 7 ENEVKQQKQQNKQKGTKKKNKKSKKD 32
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 41.2 bits (97), Expect = 2e-04
Identities = 21/57 (36%), Positives = 26/57 (45%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+KE K++ K K K K K K K K+K+KKKKK K KK K
Sbjct: 1143 EQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSK 1199
Score = 40.0 bits (94), Expect = 6e-04
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ ++K+ K+++ K K K K K +K K KKK+KKKKK K KK +
Sbjct: 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNS 1198
Score = 38.9 bits (91), Expect = 0.002
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++ K+++ + K K K K +K K KKKEKKKKK K KK R + +
Sbjct: 1146 EVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSD 1204
Score = 36.9 bits (86), Expect = 0.006
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+R K K K + K +K K KKK+ KKKK K KK K+ RK
Sbjct: 1156 QRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRK 1208
Score = 36.6 bits (85), Expect = 0.008
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E+++ EEK+ K+++ K K K K + +K K KKK+KKKKK +K
Sbjct: 1143 EQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASV 1194
Score = 36.6 bits (85), Expect = 0.009
Identities = 19/77 (24%), Positives = 35/77 (45%)
Query: 135 PDHNPVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKK 194
P K +G S P + + ++ +K+ + KKKKK +KK KKK K +
Sbjct: 1282 QYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKKTARKKKSKTRV 1341
Query: 195 KKKKKKKKKKKKKKKKK 211
K+ + + ++ +K
Sbjct: 1342 KQASASQSSRLLRRPRK 1358
Score = 36.2 bits (84), Expect = 0.010
Identities = 19/56 (33%), Positives = 25/56 (44%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
+ RK + KKKE+KKKK K KK K+ +K+K K KK
Sbjct: 1165 KASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNS 1220
Score = 36.2 bits (84), Expect = 0.012
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E++++ E+K+ K+++ K K K K +K K KKK+KKKKK
Sbjct: 1138 EEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSA 1186
Score = 35.4 bits (82), Expect = 0.023
Identities = 20/52 (38%), Positives = 28/52 (53%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KE++ K + K K K +K K KKK+K+KKK K KK K + +E
Sbjct: 1154 KEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDE 1205
Score = 34.3 bits (79), Expect = 0.046
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+R + K K K + +K K KKK+KK KK +K KK K+ +K +
Sbjct: 1153 AKEQRLKSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDD 1211
Score = 34.3 bits (79), Expect = 0.047
Identities = 16/66 (24%), Positives = 25/66 (37%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
P + + K + K KKK +K+ + KKKKK +KK
Sbjct: 1271 PKNAPKRVSAVQYSPPPPSKRPDGESNGGSKPSSPTKKKVKKRLEGSLAALKKKKKSEKK 1330
Query: 212 IMRKEE 217
RK++
Sbjct: 1331 TARKKK 1336
Score = 33.1 bits (76), Expect = 0.11
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K ++ EE+++ ++K+ K+ + K K K K K +K K KKK+KKK
Sbjct: 1135 DKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKK 1181
Score = 32.3 bits (74), Expect = 0.19
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
S + + R+ K KKK+++KKK K KK + ++ +K+K K KK
Sbjct: 1159 KSKTKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKS 1218
Score = 31.6 bits (72), Expect = 0.34
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + + +K + KKK+KKKKK +K KK K+ +K+K K K+ N
Sbjct: 1162 TKGKASKLRKPKLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSN 1219
Score = 30.0 bits (68), Expect = 1.2
Identities = 16/54 (29%), Positives = 34/54 (62%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++ K EE +++++ ++K+ K+++ K K K K K +K K KKK +K+++
Sbjct: 1131 LEDLDKFEEALEEQEEVEEKEIAKEQRLKSKTKGKASKLRKPKLKKKEKKKKKS 1184
Score = 29.2 bits (66), Expect = 2.1
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ +KKEKKKK+ K KK N K+ +K+K K KK ++++
Sbjct: 1173 KLKKKEKKKKKSSADKSKKASVVGNSKRVDSDEKRKLDDKPDNKKSNSSGSDQEDDE 1229
>gnl|CDD|235778 PRK06319, PRK06319, DNA topoisomerase I/SWI domain fusion protein;
Validated.
Length = 860
Score = 41.0 bits (96), Expect = 3e-04
Identities = 18/37 (48%), Positives = 21/37 (56%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+KK K KKK + K K K KKK K K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 40.6 bits (95), Expect = 4e-04
Identities = 18/37 (48%), Positives = 19/37 (51%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
EKK K KKK K K KKK K K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 39.8 bits (93), Expect = 6e-04
Identities = 18/38 (47%), Positives = 20/38 (52%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
+KK K KKK K K K KKK K K KK KK+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRAG 785
Score = 39.0 bits (91), Expect = 0.001
Identities = 19/42 (45%), Positives = 21/42 (50%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K E+K K KKK K K K KKK K K KK KK+
Sbjct: 743 PKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 37.9 bits (88), Expect = 0.003
Identities = 18/45 (40%), Positives = 19/45 (42%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K K +KK K KK K K K KKK K K KK K
Sbjct: 737 TKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTK 781
Score = 37.5 bits (87), Expect = 0.004
Identities = 19/52 (36%), Positives = 24/52 (46%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
D V + K +KK + KKK K K K KK+ K K KK KK+
Sbjct: 733 DAVITKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 34.0 bits (78), Expect = 0.048
Identities = 17/35 (48%), Positives = 19/35 (54%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+KK K KKK K K K KKK K K KK +K
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKK 782
Score = 34.0 bits (78), Expect = 0.058
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+KK K KKK K K K KKK K K +
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTK 781
Score = 33.6 bits (77), Expect = 0.083
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+KK K K K + K K KKK K K KK R
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 33.3 bits (76), Expect = 0.091
Identities = 15/37 (40%), Positives = 17/37 (45%)
Query: 182 KKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+KK KKK K K K KKK K K K K+
Sbjct: 748 EKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 29.0 bits (65), Expect = 2.2
Identities = 13/43 (30%), Positives = 17/43 (39%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEK 193
P P + ++K K + K KKK K K K KK
Sbjct: 742 TPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAKSKKTTKKRA 784
Score = 29.0 bits (65), Expect = 2.4
Identities = 14/40 (35%), Positives = 16/40 (40%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K K +K K KK+ K K K KKK K K
Sbjct: 736 ITKYAGTPKTPYEKKTKAKKKSASTKGKAAKTVKKKSKAK 775
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 40.6 bits (95), Expect = 3e-04
Identities = 22/53 (41%), Positives = 39/53 (73%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K E K+EEK+K++ K++KKK K+K KE+ K +K K++ K+K+ K+ +++E
Sbjct: 99 KNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKE 151
Score = 40.3 bits (94), Expect = 4e-04
Identities = 17/53 (32%), Positives = 39/53 (73%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + + +++KK++K+K K++ K +K K++ KEK+ K+K+K+K+KK ++ +
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPR 158
Score = 39.9 bits (93), Expect = 5e-04
Identities = 20/61 (32%), Positives = 40/61 (65%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ +++KKEK K+E K +K K++ K+K K+KEK+K+KK ++ + ++++KK
Sbjct: 106 EEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165
Query: 211 K 211
+
Sbjct: 166 R 166
Score = 39.9 bits (93), Expect = 6e-04
Identities = 24/54 (44%), Positives = 42/54 (77%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++KE+ K+E+KKKK+K K++ K++K K+E K+K+ K+K+K+K+KK + R E
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDRE 161
Score = 39.5 bits (92), Expect = 8e-04
Identities = 22/56 (39%), Positives = 42/56 (75%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KE++K++E+ K++KKKKK+K K++ K++K K++ K+K+ K+K+K+ +K E
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEE 156
Score = 39.1 bits (91), Expect = 0.001
Identities = 21/55 (38%), Positives = 39/55 (70%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KE K + K+++K+K++ K+ KKKKKEK K++ K +K K++ K+K+ +++E
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEK 148
Score = 39.1 bits (91), Expect = 0.001
Identities = 24/60 (40%), Positives = 41/60 (68%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+P S + K++++ KEEKKKKK+K K++ +K KE+ K+K+ K+K+K+K+KK
Sbjct: 95 AKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKV 154
Score = 38.7 bits (90), Expect = 0.001
Identities = 23/54 (42%), Positives = 40/54 (74%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+E+K+KE+ K++KKKKK+K ++ K K K++ K+K+ K+K+K+K + EE
Sbjct: 104 KEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEP 157
Score = 38.7 bits (90), Expect = 0.001
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
S + + K+EKKKK+EK K++ K +K K + K+K K+K+K+K+KK ++ + +
Sbjct: 102 SGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDRE 161
Query: 213 MRKEEN 218
K+
Sbjct: 162 EEKKRE 167
Score = 37.9 bits (88), Expect = 0.002
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ K+ K+KE++K+KK ++ + + ++KK+E+ + K + KK KKK K E
Sbjct: 137 AKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPE 192
Score = 37.2 bits (86), Expect = 0.004
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+S ++ EK + K K K+ KN+ K+E+K+K++ K++KKKKK+K K
Sbjct: 72 SSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPK 125
Score = 36.8 bits (85), Expect = 0.006
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K K ++ K + K+++K K++ KE+KKKKK+K K++ K +K K KE+
Sbjct: 88 PAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 36.4 bits (84), Expect = 0.007
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+R ++K+KE++KK ++ + +++ KK+++ + K + KK KKK KKK +EE
Sbjct: 139 EKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEK 195
Score = 36.4 bits (84), Expect = 0.008
Identities = 18/56 (32%), Positives = 34/56 (60%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
V + + K +E K + K+++K+ ++ K+EKKKKK+K K++ K +K K+
Sbjct: 80 VEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKE 135
Score = 36.4 bits (84), Expect = 0.009
Identities = 16/58 (27%), Positives = 40/58 (68%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ + + ++K+ ++K+K+K+KK ++ + +++EKK+++ + K + KK KKK K++
Sbjct: 131 RKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKK 188
Score = 36.0 bits (83), Expect = 0.012
Identities = 19/57 (33%), Positives = 37/57 (64%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+R KEK+K++EKK ++ + ++++ K+++ K + KK KKK KKK+ +E+
Sbjct: 139 EKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEK 195
Score = 36.0 bits (83), Expect = 0.013
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K K KE K + K+++K+K + K+++KKKK+K K++ K +K K++ K
Sbjct: 88 PAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEK 140
Score = 35.6 bits (82), Expect = 0.013
Identities = 17/59 (28%), Positives = 42/59 (71%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + +K+KKK++ K++ K +K K++ K+K+ K+K+K+K+KK ++ + +++ ++E
Sbjct: 111 EQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERV 169
Score = 35.6 bits (82), Expect = 0.015
Identities = 19/53 (35%), Positives = 32/53 (60%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ + K K+ K + K ++K+KE+ K++KKKKK+K K++ K KEE
Sbjct: 84 GSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEE 136
Score = 34.9 bits (80), Expect = 0.023
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+R K K K K K+ K + K+++KEK++ K++KKKKK+K K++ RK +
Sbjct: 78 KRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPK 134
Score = 33.7 bits (77), Expect = 0.064
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
P + +K E+ + E++KK+++ + K KK +KK KKK+ +++K+++
Sbjct: 140 KRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQA 199
Query: 212 IMRKE 216
Sbjct: 200 AREAV 204
Score = 33.7 bits (77), Expect = 0.071
Identities = 17/48 (35%), Positives = 35/48 (72%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ K++K KEE K+K+ K+K+K K+KK E+ + ++++KK+++ + K
Sbjct: 125 KEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAK 172
Score = 33.3 bits (76), Expect = 0.075
Identities = 17/61 (27%), Positives = 33/61 (54%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
R KK ++ + + + KK KKK NKKK+ +++K+++ ++ K K ++ E
Sbjct: 156 EPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNE 215
Query: 217 E 217
E
Sbjct: 216 E 216
Score = 33.3 bits (76), Expect = 0.078
Identities = 17/69 (24%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKK--KKKNKKKKKEKKKKKKKKKKKKKKKKK 209
P ++ ++ + ++EEKK+++ + K KK KKK KKK+ +++K+++ +
Sbjct: 142 PPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAR 201
Query: 210 KKIMRKEEN 218
+ + K E
Sbjct: 202 EAVKGKPEE 210
Score = 32.6 bits (74), Expect = 0.16
Identities = 13/59 (22%), Positives = 30/59 (50%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++++ + K KK KKK K K+ +E+K+++ ++ K K ++ + + E
Sbjct: 161 EEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREK 219
Score = 31.0 bits (70), Expect = 0.47
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
V R +K++++ K + KK KKK KKK+ +++K+++ ++ K K +
Sbjct: 153 KVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPD 212
Query: 215 KEEN 218
E
Sbjct: 213 VNEE 216
Score = 29.5 bits (66), Expect = 1.4
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K + ++ +K K K KE K + K+++K+K++ K++ +K+E
Sbjct: 70 KLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKE 122
Score = 28.3 bits (63), Expect = 3.9
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+R R + K + ++ KKK KKK+ +++K+++ ++ K K ++ + KEE+
Sbjct: 165 KRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEED 222
Score = 27.5 bits (61), Expect = 6.8
Identities = 11/56 (19%), Positives = 30/56 (53%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R + + KK ++K KKK+ ++ K+++ ++ K K ++ ++++K +
Sbjct: 170 RAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGK 225
Score = 27.2 bits (60), Expect = 7.8
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R +K KKK KKK+ +++K++ ++ K K ++ ++++K++ +E
Sbjct: 174 RPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGKDRETT 230
Score = 27.2 bits (60), Expect = 8.8
Identities = 13/61 (21%), Positives = 29/61 (47%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R R K KK +KK KKK+ + +K+++ ++ K K ++ ++++ +
Sbjct: 165 KRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDG 224
Query: 218 N 218
Sbjct: 225 K 225
>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase; Provisional.
Length = 330
Score = 40.2 bits (95), Expect = 4e-04
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
KE K++ + KK+ K +K +KK++K++ K K K K +
Sbjct: 50 KEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 39.0 bits (92), Expect = 0.001
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
+ KE+ K KK+ K K KKK+K++ K K K K +
Sbjct: 50 KEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 38.3 bits (90), Expect = 0.002
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 12/63 (19%)
Query: 162 RRRKKEKKKK-------EEKKKKKKKKK-----KKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+RKK +K + E+ K+ K++ K KK+ K K +KKK+K++ K K K K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 210 KKI 212
++
Sbjct: 90 PRL 92
Score = 37.5 bits (88), Expect = 0.003
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
+ K +++ K K +KKK K++ K K K K +
Sbjct: 51 EMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 36.3 bits (85), Expect = 0.007
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
++ +++ K +KK+ K K +K K+K++ K K K K +
Sbjct: 49 YKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 36.0 bits (84), Expect = 0.009
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
N + K+E K KK+ K K + KK+K+E K K K K +
Sbjct: 46 NEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSKPR 91
Score = 33.7 bits (78), Expect = 0.050
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 163 RRKKEKKKKE-------EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
++K+ +K E E+ K+ K++ K KK+ K K +KKK+K++ K K K
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Score = 33.7 bits (78), Expect = 0.053
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 9/61 (14%)
Query: 164 RKKEKKKKEE-------KKKKKKKKKKKKNKKKKKEKKK--KKKKKKKKKKKKKKKKIMR 214
+++K +K E ++ K+ K++ K KKE K K +KKK+K++ K K +
Sbjct: 30 AQRKKSQKGELEVTNLNEQYKEMKEELKAALLDKKELKAWHKAQKKKEKQEAKAAKAKSK 89
Query: 215 K 215
Sbjct: 90 P 90
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 39.4 bits (92), Expect = 4e-04
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ +++ + K + K+KKK+ K K +K+K K + KK K K K
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 38.6 bits (90), Expect = 7e-04
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ E++ E K + K+KKK++ K K EK+K K + KK K K K
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 37.4 bits (87), Expect = 0.002
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E+ E +++ + K + +KKK+E K K +K+K K + KK K
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 37.0 bits (86), Expect = 0.002
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+ + + E K + ++KKK++ K K K+K K + KK K K K
Sbjct: 102 EEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 36.7 bits (85), Expect = 0.003
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 139 PVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
P +WK + S ++ ++E+ + K + K+KK ++ K K +K+K
Sbjct: 82 PAMWKIFREL---SSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEK 138
Query: 199 KKKKKKKKKKKK 210
K + KK K K
Sbjct: 139 PKTEPKKPKPSK 150
Score = 36.7 bits (85), Expect = 0.003
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+E + E++ + K + K KKK++ K K +K+K K + KK K
Sbjct: 103 EESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKP 148
Score = 35.5 bits (82), Expect = 0.008
Identities = 15/45 (33%), Positives = 27/45 (60%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E ++++ + K + K+KKK + K + +K+K K + KK K K K
Sbjct: 108 ETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSKPK 152
Score = 35.5 bits (82), Expect = 0.008
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ ++E + K + K+K K++ + K +K+K K + KK K K
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPSK 150
Score = 35.1 bits (81), Expect = 0.011
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
E++ +E +++ + K ++K+KKK + K K +K+K K + KK
Sbjct: 101 TEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 32.8 bits (75), Expect = 0.056
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
++ +++ + K K+KK+++ K K +K+K K + KK
Sbjct: 106 TDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPK 147
Score = 30.9 bits (70), Expect = 0.26
Identities = 12/50 (24%), Positives = 29/50 (58%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R ++EE +++ + ++++ + K + K+KKK++ K K +K+K
Sbjct: 89 RELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEK 138
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 40.2 bits (94), Expect = 4e-04
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R +K K+ E+ K+ ++K+K+ + K K+ + K K + + +KK K++ ++ E
Sbjct: 97 RAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAE 153
Score = 38.7 bits (90), Expect = 0.001
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 162 RRRKKEKKKKEEKKKKK-----KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++ +EK+K+ E+ K K K K + + +KK KE+ KK+ +++ K K + K E
Sbjct: 111 AKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAE 170
Score = 38.3 bits (89), Expect = 0.002
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ ++ E K K E + +KK K++ K + +++ K K + KKK + KKK
Sbjct: 125 KAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKA 175
Score = 37.5 bits (87), Expect = 0.003
Identities = 12/64 (18%), Positives = 33/64 (51%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
A R++ +++ E+ K+ ++ K+ +K+K+ ++ K K+ + K K + +
Sbjct: 83 QRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEK 142
Query: 214 RKEE 217
+ +E
Sbjct: 143 KAKE 146
Score = 37.5 bits (87), Expect = 0.003
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+++ E++ K + + KKK + KK + E K K + K K K ++ K K
Sbjct: 149 KKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAK 197
Score = 37.5 bits (87), Expect = 0.003
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 167 EKKKKEEKKKK---KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
EKK KEE KK+ + K K KKK + KKK + + K K + K K +E
Sbjct: 141 EKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEE 193
Score = 36.7 bits (85), Expect = 0.005
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++++ +E K K+ + K K + + + K K++ KK+ +++ K K + KKK
Sbjct: 117 KQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKK 167
Score = 36.7 bits (85), Expect = 0.006
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+++ +E+ K + + KKK + K K + + K K + K K K ++ K K K
Sbjct: 149 KKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKA 203
Score = 36.4 bits (84), Expect = 0.007
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++ + K K E + +KK K++ KK +++ + K + KKK + KKK + K +
Sbjct: 126 AKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKA 183
Score = 35.6 bits (82), Expect = 0.013
Identities = 11/55 (20%), Positives = 22/55 (40%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+++ + E K K E K K K ++ K + K K + K + + +
Sbjct: 172 KKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAE 226
Score = 35.2 bits (81), Expect = 0.017
Identities = 13/55 (23%), Positives = 37/55 (67%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
AN ++++K KK++E++KK +++ ++ K++ E+ ++K+ +++ +K K+
Sbjct: 52 ANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQ 106
Score = 35.2 bits (81), Expect = 0.018
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 165 KKEKKKKEEKKKKKK--KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ + K E KKK KKK + K K E K K K ++ K K + K E
Sbjct: 155 EAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAE 208
Score = 34.8 bits (80), Expect = 0.021
Identities = 18/53 (33%), Positives = 25/53 (47%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K K E KKK + KKK + + K K + K K K ++ K K + K E
Sbjct: 156 AKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAE 208
Score = 34.4 bits (79), Expect = 0.030
Identities = 9/52 (17%), Positives = 30/52 (57%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++++ E+ ++K+ +++ K K+ ++ K+ ++K+K+ ++ K E
Sbjct: 80 AEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAE 131
Score = 34.0 bits (78), Expect = 0.037
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KKK E KKK + + K K + K K K ++ K K + K K + K E
Sbjct: 165 KKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAE 214
Score = 33.3 bits (76), Expect = 0.080
Identities = 11/58 (18%), Positives = 35/58 (60%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++ + EK++ E+ ++K+ +++ +K K+ ++ K+ ++K+K+ ++ K + E
Sbjct: 75 QQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEA 132
Score = 32.9 bits (75), Expect = 0.10
Identities = 13/63 (20%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
P A + R+KK +++ EE +K++ ++ + +K+ +++ +K K+ ++ K+ + +
Sbjct: 61 PAAKKEQERQKKLEQQAEEAEKQRAAEQAR--QKELEQRAAAEKAAKQAEQAAKQAEEKQ 118
Query: 215 KEE 217
K+
Sbjct: 119 KQA 121
Score = 32.9 bits (75), Expect = 0.10
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+++ E KKK E + K K + K K K ++ + K + K K + K +
Sbjct: 165 KKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAA 218
Score = 32.9 bits (75), Expect = 0.12
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ + +KK + E K K + K K K ++ K + + K K + K + +
Sbjct: 166 KKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAA 222
Score = 31.7 bits (72), Expect = 0.23
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ + + KK+ + KKK + + K K + K K K ++ K K + K K
Sbjct: 156 AKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAK 204
Score = 31.3 bits (71), Expect = 0.35
Identities = 9/66 (13%), Positives = 35/66 (53%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ ++ +E +K+ ++ ++K+ +++ +K K+ ++ K+ ++K+K+ ++
Sbjct: 64 KKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEE 123
Query: 212 IMRKEE 217
K+
Sbjct: 124 AKAKQA 129
Score = 31.0 bits (70), Expect = 0.47
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ K K E+ K K + K K + K + + + ++K
Sbjct: 185 AKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERK 228
Score = 27.9 bits (62), Expect = 4.6
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K K K EE K K + K K + + + + + ++K
Sbjct: 185 AKAKAKAEEAKAKAEAAKAKAAAEAAAKAEAEAAAAAAAEAERK 228
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 40.0 bits (94), Expect = 6e-04
Identities = 18/53 (33%), Positives = 38/53 (71%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KE+ ++E+++K+ K++K+ K KK+E+KKKK+ +K +K K + +++E+
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAKIPPAEFFKRQED 602
Score = 39.2 bits (92), Expect = 9e-04
Identities = 16/41 (39%), Positives = 32/41 (78%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
K+E ++++E+K+ K++K+ + KK++EKKKK+ +K +K K
Sbjct: 550 KEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 38.1 bits (89), Expect = 0.002
Identities = 17/45 (37%), Positives = 33/45 (73%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K K+E +++K++K+ K+ K+ +K KK+++KKKK+ +K +K K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 36.5 bits (85), Expect = 0.007
Identities = 14/43 (32%), Positives = 34/43 (79%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K ++++ +++K++K+ K++K+ +K KK+++KKKK+ +K +K
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 36.2 bits (84), Expect = 0.012
Identities = 15/37 (40%), Positives = 29/37 (78%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
+R+KE+K+ +++K+ +K KK++ KKKK+ +K +K K
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 34.6 bits (80), Expect = 0.036
Identities = 16/37 (43%), Positives = 28/37 (75%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
+R K+EK+ +E+K+ +K KK+++ KKK+ EK +K K
Sbjct: 554 QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
Score = 34.2 bits (79), Expect = 0.049
Identities = 15/43 (34%), Positives = 30/43 (69%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K K++ ++ K++K+ K++K+ +K KK+++KKKK + K E
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.8 bits (78), Expect = 0.061
Identities = 13/43 (30%), Positives = 32/43 (74%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K K++ +++ ++K+ K++K+ +K KK+++KKKK++ + E+
Sbjct: 546 KLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 32.7 bits (75), Expect = 0.14
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 146 EGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
+G + D R + +KE K++++ +K KK+++KK K+ +K +K K
Sbjct: 540 DGPSVWKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEKAK 590
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 39.8 bits (93), Expect = 6e-04
Identities = 17/51 (33%), Positives = 33/51 (64%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
KK + K+E ++ + K K +K K+E+ +KK+K++ + K+K++K RK
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERK 433
Score = 37.5 bits (87), Expect = 0.003
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K E EE + K K++K K+ + +KK+K++ + K+K++K ++KK
Sbjct: 385 LGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 36.7 bits (85), Expect = 0.006
Identities = 13/51 (25%), Positives = 33/51 (64%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K++ E+ + K K++K K ++ +K++K++ + K+K++K ++KK
Sbjct: 384 KLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDERKK 434
Score = 36.3 bits (84), Expect = 0.008
Identities = 12/50 (24%), Positives = 34/50 (68%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++ + K + + ++ + K K++K K+++ EKK+K++ + K+K++K ++
Sbjct: 383 KKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 33.2 bits (76), Expect = 0.083
Identities = 13/52 (25%), Positives = 31/52 (59%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ KK + K + ++ K K+EK K+++ +KK+K++ + K R+++
Sbjct: 379 QDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKD 430
Score = 32.5 bits (74), Expect = 0.16
Identities = 13/53 (24%), Positives = 32/53 (60%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ KK E K + ++ + K K+++ K+++ +KK+K++ + K+ +K+E
Sbjct: 379 QDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQKDE 431
Score = 30.9 bits (70), Expect = 0.43
Identities = 11/53 (20%), Positives = 31/53 (58%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K + K+ + K + ++ + K KE+K K+++ +KK+K++ + ++++
Sbjct: 377 KLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKEKRQK 429
Score = 27.8 bits (62), Expect = 5.1
Identities = 13/51 (25%), Positives = 30/51 (58%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KK ++ KK + K + ++ + K K++K K+++ +KK+K++ +E
Sbjct: 375 NKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDKE 425
>gnl|CDD|240254 PTZ00069, PTZ00069, 60S ribosomal protein L5; Provisional.
Length = 300
Score = 39.3 bits (92), Expect = 7e-04
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKK--KKEKKKKKKKKKKKKKKKKKKKI 212
+H R K K++KKKKKK KK KK K++K + K KK +++++ +KKI
Sbjct: 242 KKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKI 299
Score = 37.7 bits (88), Expect = 0.002
Identities = 20/51 (39%), Positives = 33/51 (64%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
AN + ++KK+KKKK KK K KK K +K + + KK +++++ +KK K
Sbjct: 250 ANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 37.0 bits (86), Expect = 0.005
Identities = 19/47 (40%), Positives = 32/47 (68%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ K+KKKK++K KK K KK K++K + K KK +++++ +KK K
Sbjct: 254 KVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRERLQKKIK 300
Score = 34.3 bits (79), Expect = 0.030
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
+ K KKKKKKKKK KK K KK K++K + K KK ++ R
Sbjct: 249 RANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRER 294
Score = 33.5 bits (77), Expect = 0.057
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K + K KKKKKKKK KK K KK K++K + K KK R+
Sbjct: 243 KAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRE 293
Score = 33.5 bits (77), Expect = 0.058
Identities = 19/49 (38%), Positives = 26/49 (53%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ K KKKKKKKKK KK + KK K++K + K KK + +
Sbjct: 246 AAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRER 294
Score = 33.5 bits (77), Expect = 0.060
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
D + + +++ + + KKKKKKKKK +KK K +K K++K + K KK +++
Sbjct: 235 DSLEDMYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRR 292
Score = 32.7 bits (75), Expect = 0.10
Identities = 22/52 (42%), Positives = 27/52 (51%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
KK K KKKKKKK K K+ K KK K++K + K KK R+E
Sbjct: 242 KKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAKKAQRRE 293
Score = 27.3 bits (61), Expect = 5.8
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K + K KKKKK+KKK KK K KK K++ R +
Sbjct: 243 KAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKARVKAK 287
Score = 27.3 bits (61), Expect = 6.2
Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
E+ KK + K KK+KKKKKK KK K KK RK
Sbjct: 238 EDMYKKAHAAIRANPSKVKKKKKKKKKVVHKKYKTKKLTGKQRKA 282
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 39.4 bits (93), Expect = 8e-04
Identities = 15/54 (27%), Positives = 36/54 (66%), Gaps = 1/54 (1%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++ KK+ E KK+ + K++ K + E +K+ ++++ + +K +K+ +++KEEN
Sbjct: 45 EEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKR-LLQKEEN 97
Score = 37.8 bits (89), Expect = 0.003
Identities = 14/59 (23%), Positives = 40/59 (67%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
H+ R + EK+ +E + + +K +K+ K++ ++K + +K++++ +KK+K++ +K++
Sbjct: 67 HKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQE 125
Score = 32.8 bits (76), Expect = 0.12
Identities = 14/64 (21%), Positives = 41/64 (64%), Gaps = 8/64 (12%)
Query: 162 RRRKKEKKKKEEK--------KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
R R+ E +K E++ +K + +K++ + +KKEK+ ++K+++ +KK+++ ++++
Sbjct: 78 RERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI 137
Query: 214 RKEE 217
++
Sbjct: 138 EEQL 141
Score = 32.8 bits (76), Expect = 0.12
Identities = 11/55 (20%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 161 RRRRKKE--KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
R +K+E +K E +K++++ +KK+ + ++K+++ +KK+++ ++ +++ + +
Sbjct: 90 RLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEEQLQEL 144
Score = 32.8 bits (76), Expect = 0.13
Identities = 14/68 (20%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKK--KKKKKKKNKKKKKEKKKKKK----KKKKKKKKKKKK 210
A + ++ E K++ K + + K+ ++++N+ +K EK+ +K +K + +K+++
Sbjct: 51 AEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREE 110
Query: 211 KIMRKEEN 218
++ +KE+
Sbjct: 111 ELEKKEKE 118
Score = 32.1 bits (74), Expect = 0.22
Identities = 16/64 (25%), Positives = 42/64 (65%), Gaps = 6/64 (9%)
Query: 161 RRRRKK----EKK--KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
R RR + EK+ +KEE +K + +K+ ++ +K++K+ ++K+++ +KK+++ + +
Sbjct: 78 RERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELI 137
Query: 215 KEEN 218
+E+
Sbjct: 138 EEQL 141
Score = 31.3 bits (72), Expect = 0.38
Identities = 12/63 (19%), Positives = 35/63 (55%), Gaps = 5/63 (7%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK-----KKKKIMRK 215
++ + KK+ + K++ K + + +K+ +E++ + +K +K+ +K +K +++ K
Sbjct: 48 KKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEK 107
Query: 216 EEN 218
E
Sbjct: 108 REE 110
Score = 27.8 bits (63), Expect = 4.4
Identities = 10/40 (25%), Positives = 24/40 (60%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ K K+ +++ K+ +E KK+ + KK+ + K++I +
Sbjct: 30 EAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEIHKL 69
Score = 27.0 bits (61), Expect = 9.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KK + K + +++ K+ ++ KK+ + KK+ + KEE
Sbjct: 26 KKIAEAKIKEAEEEAKRILEEAKKEAEAIKKEALLEAKEEI 66
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 39.6 bits (93), Expect = 9e-04
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
KKE KK EEK ++ + + +KK ++ +K K K K KK KK +
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNL 148
Score = 35.8 bits (83), Expect = 0.015
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
E+ KKE KK ++K ++ + +KK+E+ +K K K K KK K
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Score = 35.8 bits (83), Expect = 0.015
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
E + + E+ KK+ KK ++K ++ + E +KK+++ +K K K K
Sbjct: 91 IEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDK 135
Score = 35.4 bits (82), Expect = 0.019
Identities = 12/48 (25%), Positives = 30/48 (62%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
++ E + + ++ KK+ K ++K E+ + + +KK+++ +K K K + K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDK 135
Score = 34.2 bits (79), Expect = 0.048
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+E KK+ +K ++K ++ + + +KK++E +K K K K KK KK
Sbjct: 98 EELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Score = 33.8 bits (78), Expect = 0.057
Identities = 9/42 (21%), Positives = 25/42 (59%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+K+KK +K + +K+ ++ + + K +K+ K+ +K++
Sbjct: 411 DAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQL 452
Score = 33.8 bits (78), Expect = 0.061
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + +K+ K+ ++K ++ + + + K+++ EK K K K KK KK
Sbjct: 95 AQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYD 145
Score = 33.4 bits (77), Expect = 0.083
Identities = 12/44 (27%), Positives = 29/44 (65%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
E+ + E + ++ KK+ KK ++K ++ + + +KK+++ +K K K
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNK 131
Score = 33.1 bits (76), Expect = 0.094
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ ++ KK+ ++ ++K ++ + + KK+++ +K K K K KK KK
Sbjct: 93 IEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKY 144
Score = 33.1 bits (76), Expect = 0.11
Identities = 11/54 (20%), Positives = 31/54 (57%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + ++ +++ KK ++K ++ + +K++++ +K K K K KK + + N
Sbjct: 94 EAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Score = 32.7 bits (75), Expect = 0.16
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E K+ +K+KK +K +K+ K+ + + K +K+I E+
Sbjct: 404 AELKEDIDAYQKEKKGLEKAINSLEKEIKQLEAEIKALEKEIKELEKQ 451
Score = 30.4 bits (69), Expect = 0.74
Identities = 11/47 (23%), Positives = 28/47 (59%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
EE + + + ++ K + KK E+K ++ + + +KK+++ +K K +
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLD 134
Score = 29.2 bits (66), Expect = 1.9
Identities = 14/62 (22%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK----KKKKKKKKKKKKKIMRKE 216
+ + + + +K+E++ +K K K KK KK K KK K+K++++
Sbjct: 110 KIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKEL 169
Query: 217 EN 218
++
Sbjct: 170 KS 171
Score = 29.2 bits (66), Expect = 1.9
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+++ ++ E + +KK+++ +K K + KK KK + K + K+
Sbjct: 107 LEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKK 159
Score = 28.4 bits (64), Expect = 3.4
Identities = 16/55 (29%), Positives = 22/55 (40%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KKE++ ++ K K K KK KK + K KK K+K K
Sbjct: 119 EKKEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKELKSVI 173
Score = 28.4 bits (64), Expect = 3.8
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+E+ +K + K K KK K + K KK K+K K ++
Sbjct: 121 KEEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKELKSVIL 174
Score = 27.7 bits (62), Expect = 6.1
Identities = 16/52 (30%), Positives = 22/52 (42%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+K K K +K KK KK N + + KK K+K K+ K I
Sbjct: 122 EEELEKAKNKFLDKAWKKLAKKYDSNLSEALKGLNYKKNFKEKLLKELKSVI 173
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 38.6 bits (90), Expect = 0.001
Identities = 21/45 (46%), Positives = 23/45 (51%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
KEK K E+K KK K K K K K K K K + K KK K K
Sbjct: 85 KEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 37.5 bits (87), Expect = 0.003
Identities = 19/45 (42%), Positives = 23/45 (51%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K K++ K +KK KK K K K K K K K K + K KK K
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAA 126
Score = 36.3 bits (84), Expect = 0.006
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K +EK K +KK KK K K K K K K K K + K KK K
Sbjct: 77 PEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKT 124
Score = 36.3 bits (84), Expect = 0.007
Identities = 18/48 (37%), Positives = 23/48 (47%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ E + K K+K K +K KK K K K K K K K K + K K
Sbjct: 72 EPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKK 119
Score = 36.3 bits (84), Expect = 0.007
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
E + K+K K +KK KK K K K K K K K K + K KK
Sbjct: 75 TPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPP 121
Score = 35.9 bits (83), Expect = 0.008
Identities = 15/54 (27%), Positives = 24/54 (44%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E++ K + + + K+K + +KK KK K K K K K K K +
Sbjct: 62 PPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQP 115
Score = 35.9 bits (83), Expect = 0.008
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ K++ K +++ KK K K K K K K + + K KK K K
Sbjct: 83 KPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAP 129
Score = 35.9 bits (83), Expect = 0.009
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K+K + +KK KK K K K K + K K + K KK K K
Sbjct: 82 PKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAK 127
Score = 35.5 bits (82), Expect = 0.010
Identities = 16/58 (27%), Positives = 26/58 (44%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
A + + + E +++ K + + + K KEK K +KK KK K K K K
Sbjct: 49 LEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPK 106
Score = 35.5 bits (82), Expect = 0.012
Identities = 19/49 (38%), Positives = 23/49 (46%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
K ++K K EKK KK K K K K K + K + K KK K K
Sbjct: 83 KPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKAPAA 131
Score = 35.5 bits (82), Expect = 0.013
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + K K+K K +KK K K K K K K K K K + K KK
Sbjct: 74 ETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKP 120
Score = 34.8 bits (80), Expect = 0.018
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
P K K+K + +KK KK K K K K K K K K + K KK K K
Sbjct: 69 PPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPKKPPSKTAAKA 128
Score = 34.8 bits (80), Expect = 0.018
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ + + E + K K+ K +K+ KK K K K K K K K K K +
Sbjct: 66 QPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKVKPQPKPK 118
Score = 32.8 bits (75), Expect = 0.099
Identities = 12/52 (23%), Positives = 23/52 (44%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E + + E +++ K + + K K+K K +KK KK K + +
Sbjct: 55 EPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPK 106
Score = 29.8 bits (67), Expect = 0.93
Identities = 13/53 (24%), Positives = 25/53 (47%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
E+ + E + +++ K + + + K K+K K +KK KK K K +
Sbjct: 52 PTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPK 104
>gnl|CDD|235971 PRK07219, PRK07219, DNA topoisomerase I; Validated.
Length = 822
Score = 39.2 bits (92), Expect = 0.001
Identities = 11/52 (21%), Positives = 17/52 (32%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ ++KKEK+ K E + K K K K + K
Sbjct: 764 YTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKV 815
Score = 34.6 bits (80), Expect = 0.040
Identities = 7/51 (13%), Positives = 17/51 (33%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K++K+K+ + + + K K +K K+ +
Sbjct: 763 NYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAA 813
Score = 33.8 bits (78), Expect = 0.061
Identities = 10/57 (17%), Positives = 21/57 (36%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ EK+KKE++ K + + K K ++ K + + K +
Sbjct: 760 PKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGVETVTDLTAADPDAVAAKVD 816
Score = 31.1 bits (71), Expect = 0.51
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R K + K +K KK+K+ K + + K K +K K
Sbjct: 745 RVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLK 793
Score = 27.3 bits (61), Expect = 8.3
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 164 RKKEKKKKEEK-----KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R K E K +K+KK+ + K + + K K +K K
Sbjct: 745 RVKGGFGDELGCCNNPKCNYTEKQKKEKESKSELEALKGVGAKTAEKLKDAGV 797
>gnl|CDD|150884 pfam10278, Med19, Mediator of RNA pol II transcription subunit 19.
Med19 represents a family of conserved proteins which
are members of the multi-protein co-activator Mediator
complex. Mediator is required for activation of RNA
polymerase II transcription by DNA binding
transactivators.
Length = 178
Score = 37.9 bits (88), Expect = 0.001
Identities = 31/91 (34%), Positives = 45/91 (49%), Gaps = 18/91 (19%)
Query: 138 NPVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKK-------------- 183
P+ + G +HP P+ +R + KKK + K KK + +
Sbjct: 80 LPLTSVQLAGFRLHPG-PLPEQYRLMHIQPPKKKHKHKHKKHRTQDPLPEETPSDSEGLK 138
Query: 184 ---KKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KK+KKKK E K++KKKKK+KKKKKK+
Sbjct: 139 GHEKKHKKKKHEDDKERKKKKKEKKKKKKRH 169
Score = 30.6 bits (69), Expect = 0.35
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKK 194
H ++ KK+K + ++++KKKKK+KKKK K+ E
Sbjct: 140 HEKKHKKKKHEDDKERKKKKKEKKKKKKRHSPEHP 174
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 38.1 bits (89), Expect = 0.001
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ ++E++ K++K+ K K K+ KKKKK+ K K + KKK + +
Sbjct: 76 KELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAP 131
Score = 37.0 bits (86), Expect = 0.003
Identities = 17/55 (30%), Positives = 23/55 (41%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+++R K K KE KKKKKK K + KKK ++ RK
Sbjct: 86 KKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRRK 140
Score = 35.8 bits (83), Expect = 0.009
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + + +++ ++KK+ K K K+ KKKKK+ K K + KKK
Sbjct: 65 EPESDDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKS 124
Score = 35.0 bits (81), Expect = 0.018
Identities = 14/55 (25%), Positives = 25/55 (45%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+++++ + K +E KKKKKK K K + KKK ++ R+
Sbjct: 85 KKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAAAPRPKKKSERISWAPTLLDSPRR 139
Score = 30.0 bits (68), Expect = 0.76
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+E++ +K+ +++++ KKKK+ K K K+ KKKKKK +
Sbjct: 69 DDEEEGEKELQREERLKKKKRVKTKAYKEPTKKKKKKDPTAAKSPKAA 116
Score = 28.5 bits (64), Expect = 2.5
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 12/78 (15%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKK------------KKKKKKKKKNKKKKKEKKKKKKK 199
P A + R ++K E+ + K+ + K+++ ++KK +
Sbjct: 110 AKSPKAAAPRPKKKSERISWAPTLLDSPRRKSSRSSTVQNKEATHERLKEREIRRKKIQA 169
Query: 200 KKKKKKKKKKKKIMRKEE 217
K +K+K+KKK+K + +EE
Sbjct: 170 KARKRKEKKKEKELTQEE 187
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 36.9 bits (86), Expect = 0.002
Identities = 16/52 (30%), Positives = 34/52 (65%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
KEK K E+K+++KK + +K K +EK + + +K +K+ ++ + ++ R+E
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRE 69
Score = 36.1 bits (84), Expect = 0.003
Identities = 13/54 (24%), Positives = 33/54 (61%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ K +KK+EEKK + +K K ++K + + +K +K+ ++ + + ++ ++ E
Sbjct: 20 EKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAE 73
Score = 35.3 bits (82), Expect = 0.007
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++EK +++ K K+K K +KK++EKK + +K K ++K + + K E
Sbjct: 3 EEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLE 55
Score = 31.1 bits (71), Expect = 0.19
Identities = 14/54 (25%), Positives = 29/54 (53%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+E+K +K+ K K+K +KK+E+KK + +K K ++K + ++
Sbjct: 2 PEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLE 55
Score = 30.3 bits (69), Expect = 0.34
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
E +++K K+ +K KEK K +KK+++KK + +K M EE
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEE 45
Score = 30.3 bits (69), Expect = 0.35
Identities = 12/53 (22%), Positives = 30/53 (56%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+++ +E K K+K K KK++++K + +K K ++K + ++ + E+
Sbjct: 4 EEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEK 56
Score = 29.5 bits (67), Expect = 0.53
Identities = 12/60 (20%), Positives = 34/60 (56%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+A + KK+++KK E +K K ++K + + ++ +K+ ++ + + +++ K +K
Sbjct: 17 IAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKK 76
Score = 29.1 bits (66), Expect = 0.72
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K K EEK + + +K +K+ ++ + E +++ K + KK +K
Sbjct: 37 KLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKMLSEKG 82
Score = 28.4 bits (64), Expect = 1.5
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ +K+ + K+K K +KK+ +KK + +K K ++K + + +K
Sbjct: 6 KTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKL 54
Score = 27.2 bits (61), Expect = 3.6
Identities = 9/46 (19%), Positives = 25/46 (54%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K E +K + ++K + + + +K+ E+ + + +++ K + KK
Sbjct: 32 KSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAKKM 77
>gnl|CDD|185429 PTZ00074, PTZ00074, 60S ribosomal protein L34; Provisional.
Length = 135
Score = 37.0 bits (86), Expect = 0.002
Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
EE+K K+ K+K +KK+K+KKKKKKKKK KK KKKK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 34.3 bits (79), Expect = 0.016
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
K+ +EK K+KK+KKKKK KKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 32.7 bits (75), Expect = 0.046
Identities = 22/41 (53%), Positives = 30/41 (73%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
+E+K ++ K+K K+KK+K KKKKK+KKK KK KKKK
Sbjct: 95 VEEQKIVKQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 32.0 bits (73), Expect = 0.095
Identities = 20/34 (58%), Positives = 27/34 (79%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK 195
++ KEK K++++KKKKKKKKKKK KK +KKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 31.2 bits (71), Expect = 0.18
Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
++ ++K K++K+KKKKKKKKKK KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 30.4 bits (69), Expect = 0.29
Identities = 20/34 (58%), Positives = 26/34 (76%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
++ K+K ++KK+KKKKKKKKK K KK KKKK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 29.3 bits (66), Expect = 0.79
Identities = 19/34 (55%), Positives = 28/34 (82%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKK 194
++ K++ K+K++KKKKKKKKKKK +KK K+KK
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
Score = 28.5 bits (64), Expect = 1.7
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K+ KEK K+KK+KKKKKKKKKKK +
Sbjct: 102 KQVLKEKAKQKKQKKKKKKKKKKKTSKKA 130
Score = 26.6 bits (59), Expect = 6.3
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNK 187
V +++K++KKKK++KKKK KK KK K
Sbjct: 104 VLKEKAKQKKQKKKKKKKKKKKTSKKAAKKKK 135
>gnl|CDD|204792 pfam11947, DUF3464, Protein of unknown function (DUF3464). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria and eukaryotes.
Proteins in this family are typically between 137 to 196
amino acids in length.
Length = 149
Score = 36.9 bits (86), Expect = 0.002
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+K+ + K+ +KK K +K K K K+KK K K+ + I
Sbjct: 2 ASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASESGI 49
Score = 35.4 bits (82), Expect = 0.006
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K+ E K+ +KK K K + K K+KK K K+
Sbjct: 2 ASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 32.3 bits (74), Expect = 0.096
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++ + K+ +KK K +K K K K+KK K K+
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 31.9 bits (73), Expect = 0.13
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K+ + K+ KK K +K K K K+KK K K E
Sbjct: 1 MASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASES 47
Score = 31.1 bits (71), Expect = 0.22
Identities = 14/43 (32%), Positives = 20/43 (46%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
R+R + K+ KK K +K K K K+KK K K+
Sbjct: 3 SSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 30.4 bits (69), Expect = 0.36
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+++ E K+ +KK K + K K K+KK K K+
Sbjct: 2 ASSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAAS 45
Score = 26.5 bits (59), Expect = 7.6
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 151 HPSDPVANSHRRRRKKEKKK--KEEKKKKKKKKKKKKNKKKKKE 192
+ +R RKK K K K K K+KK K+K+ E
Sbjct: 3 SSRKRLPFEPKRSRKKGVKALRKAAVAKSKDKQKKPKSKRAASE 46
>gnl|CDD|187751 cd09270, RNase_H2-B, Ribonuclease H2-B is a subunit of the
eukaryotic RNase H complex which cleaves RNA-DNA
hybrids. Ribonuclease H2B is one of the three proteins
of eukaryotic RNase H2 complex that is required for
nucleic acid binding and hydrolysis. RNase H is
classified into two families, type I (prokaryotic RNase
HI, eukaryotic RNase H1 and viral RNase H) and type II
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2/HII). RNase H endonucleolytically hydrolyzes an RNA
strand when it is annealed to a complementary DNA strand
in the presence of divalent cations, in DNA replication
and repair. The enzyme can be found in bacteria,
archaea, and eukaryotes. Most prokaryotic and eukaryotic
genomes contain multiple RNase H genes. Despite a lack
of evidence for homology from sequence comparisons, type
I and type II RNase H share a common fold and similar
steric configurations of the four acidic active-site
residues, suggesting identical or very similar catalytic
mechanisms. Eukaryotic RNase HII is active during
replication and is believed to play a role in removal of
Okazaki fragment primers and single ribonucleotides in
DNA-DNA duplexes. Eukaryotic RNase HII is functional
when it forms a complex with RNase H2B and RNase H2C
proteins. It is speculated that the two accessory
subunits are required for correct folding of the
catalytic subunit of RNase HII. Mutations in the three
subunits of human RNase HII cause neurological disorder.
Length = 211
Score = 37.7 bits (88), Expect = 0.002
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
R ++K+ K+ E + KKK + +KKKK+KK KKKK KK K I
Sbjct: 154 ERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKAI 206
Score = 37.3 bits (87), Expect = 0.003
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ +KK+ + K+ + + KKK N ++++KKKKKK KKKK KK M+
Sbjct: 154 ERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 30.4 bits (69), Expect = 0.54
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
A + R ++K ++E+KKKKKK KKKK KK K
Sbjct: 166 AEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKVAAVGMKA 205
Score = 28.8 bits (65), Expect = 1.7
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
KK E KKK+ K+ + + KK+ +++KKKKKKK KKK ++K
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKKKLKKV 198
Score = 28.0 bits (63), Expect = 3.1
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KK ++ KKK+ + K+ + + KKK +++KKKKKK K++
Sbjct: 150 LKKVERLKKKELDIKEAEAARDKKKSNNAEEEKKKKKKKSAKKK 193
>gnl|CDD|220431 pfam09831, DUF2058, Uncharacterized protein conserved in bacteria
(DUF2058). This domain, found in various prokaryotic
proteins, has no known function.
Length = 177
Score = 37.2 bits (87), Expect = 0.002
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 165 KKEKKKKEEKKKKKKKKKKKK------NKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
KK KK K+EK+K++K+ +K K+ +E K +K ++ ++ ++++ + +K
Sbjct: 15 KKAKKAKKEKRKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQKA 72
Score = 30.6 bits (70), Expect = 0.32
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKK 204
KKK KK KKEK+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 29.1 bits (66), Expect = 1.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Query: 189 KKKEKKKKKKKKKKKKKKKKKK 210
KKK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
Score = 28.3 bits (64), Expect = 2.2
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 186 NKKKKKEKKKKKKKKKKKKKKKK 208
+KKK K+ KK+K+K++K+ +K
Sbjct: 13 DKKKAKKAKKEKRKQRKQARKGA 35
Score = 28.0 bits (63), Expect = 2.8
Identities = 10/20 (50%), Positives = 17/20 (85%)
Query: 192 EKKKKKKKKKKKKKKKKKKK 211
+KK KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARK 33
Score = 27.2 bits (61), Expect = 5.4
Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 11/47 (23%)
Query: 161 RRRRKKEKKKK-----------EEKKKKKKKKKKKKNKKKKKEKKKK 196
R++RK+ +K EE K +K ++ ++ N++++ E ++K
Sbjct: 25 RKQRKQARKGADDGDDELKQAAEEAKAEKAERDRELNRQRQAEAEQK 71
Score = 26.8 bits (60), Expect = 7.1
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 191 KEKKKKKKKKKKKKKKKKKKK 211
K+K KK KK+K+K++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKG 34
Score = 26.8 bits (60), Expect = 7.3
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKK 201
KKK KK KK+K++++K+ +K
Sbjct: 14 KKKAKKAKKEKRKQRKQARKGA 35
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 37.8 bits (88), Expect = 0.003
Identities = 18/57 (31%), Positives = 40/57 (70%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ K+ ++EE++K++KK++++K K++E ++++K++KKKK KK K+ + E
Sbjct: 29 KEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWE 85
Score = 36.7 bits (85), Expect = 0.008
Identities = 16/49 (32%), Positives = 36/49 (73%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
E++K+E+K++++K K++ +++EK++KKKK KK K+ + +++ K
Sbjct: 41 EEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNK 89
Score = 36.3 bits (84), Expect = 0.010
Identities = 16/46 (34%), Positives = 33/46 (71%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
EE+K++KK++++K K+++ ++++K++KKKK KK K+ E
Sbjct: 41 EEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWEL 86
Score = 35.1 bits (81), Expect = 0.020
Identities = 16/47 (34%), Positives = 35/47 (74%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
EEK++KK++++K +K+++ +++++K++KKKK KK K+ + N
Sbjct: 42 EEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLN 88
Score = 29.0 bits (65), Expect = 2.2
Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 3/54 (5%)
Query: 165 KKEKKKKEEKKKKKKKK---KKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K+EKK++EEK K+++ +++K +KKKK KK K+ + + K K R
Sbjct: 44 KEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTTEWELLNKTKPIWTRN 97
>gnl|CDD|214661 smart00435, TOPEUc, DNA Topoisomerase I (eukaryota). DNA
Topoisomerase I (eukaryota), DNA topoisomerase V,
Vaccina virus topoisomerase, Variola virus
topoisomerase, Shope fibroma virus topoisomeras.
Length = 391
Score = 37.3 bits (87), Expect = 0.003
Identities = 22/56 (39%), Positives = 34/56 (60%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R +K + K+K K K + +K + + K+KKK+KKK++KKKK+I R EE
Sbjct: 295 RLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEE 350
Score = 36.2 bits (84), Expect = 0.009
Identities = 16/52 (30%), Positives = 34/52 (65%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
K++ K K ++ +K + K+K+K+KKK++KKKK+ ++ +++I + E
Sbjct: 305 MISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLE 356
Score = 33.1 bits (76), Expect = 0.095
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 165 KKEKKKKEEKKKKKKK---KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K K K + K+ KK + + K+K + K ++ +K + K+KKK +KEE
Sbjct: 284 EKIKALKYQLKRLKKMILLFEMISDLKRKLKSKFERDNEKLDAEVKEKKKEKKKEE 339
Score = 32.3 bits (74), Expect = 0.15
Identities = 14/49 (28%), Positives = 34/49 (69%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ + +++ +K + + K+KKK+KKK+ KKKK+ ++ +++ +K + + K
Sbjct: 314 KSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDK 362
Score = 30.0 bits (68), Expect = 0.91
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
R K + + KE+KK+KKK++KKKK ++ +E+ +K + + K++ K
Sbjct: 319 RDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENK 366
Score = 29.2 bits (66), Expect = 1.6
Identities = 17/48 (35%), Positives = 31/48 (64%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R EK E K+KKK+KKK++K KK+ + +++ +K + + K++ K
Sbjct: 319 RDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENK 366
Score = 28.5 bits (64), Expect = 3.0
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ + +K E K+KKK+KKK++ KKK+ E+ +++ +K + + K
Sbjct: 314 KSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDK 362
Score = 28.1 bits (63), Expect = 3.8
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 150 IHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+ N KEKKK+++K++KKKK+ ++ ++ +K + + K++ K
Sbjct: 313 LKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENK 366
Score = 28.1 bits (63), Expect = 4.1
Identities = 16/56 (28%), Positives = 34/56 (60%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ + R +K + +EKKK+KKK++KKK + ++ E++ +K + + K++ K
Sbjct: 311 RKLKSKFERDNEKLDAEVKEKKKEKKKEEKKKKQIERLEERIEKLEVQATDKEENK 366
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 37.7 bits (87), Expect = 0.003
Identities = 24/66 (36%), Positives = 38/66 (57%), Gaps = 8/66 (12%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKK--------KKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
+D N + +++K +++EEKK K+KK KK K KKE++ + KKKKK+
Sbjct: 521 ADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQ 580
Query: 205 KKKKKK 210
K+KK
Sbjct: 581 IAKQKK 586
Score = 34.3 bits (78), Expect = 0.041
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK----KKKKKKIMR 214
+ + K++K EE+++KK K NK+KK KK K KK+++ KKKKK+I +
Sbjct: 524 DVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAENLKKKKKQIAK 583
Query: 215 KEE 217
+++
Sbjct: 584 QKK 586
Score = 30.4 bits (68), Expect = 0.72
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K+ K K KK+K + +++KK K K+KK KK K +KEE
Sbjct: 523 KDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEE 569
Score = 28.9 bits (64), Expect = 2.3
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K K KK+K ++++K+ K K+KK KK K K+E
Sbjct: 526 NKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEE 569
Score = 28.5 bits (63), Expect = 3.0
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K E + K K KNKK+K ++++++KK K K+KK+ +K +
Sbjct: 514 KYSETSEADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKY 562
Score = 28.5 bits (63), Expect = 3.4
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+++K KK K KK+++ + K KKK+ K+KK KK
Sbjct: 552 KQKKLYKKMKYSNAKKEEQAENLKKKKKQIAKQKKLDSKK 591
Score = 27.0 bits (59), Expect = 8.5
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ +K + K KK+K ++++ KK K K+KK KK K K + EN
Sbjct: 520 EADKDVNKSKNKKRKVDEEEEEKKLKMIMMSNKQKKLYKKMKYSNAKKEEQAEN 573
>gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional.
Length = 393
Score = 37.3 bits (87), Expect = 0.004
Identities = 17/44 (38%), Positives = 22/44 (50%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K+ KK K K KKKKKK + + ++ K KKK KK
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 36.9 bits (86), Expect = 0.006
Identities = 19/45 (42%), Positives = 22/45 (48%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
KK KK K K KKKKKK K + ++ K KKK KK
Sbjct: 349 TKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 35.8 bits (83), Expect = 0.011
Identities = 17/43 (39%), Positives = 21/43 (48%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K K+ K K KKKKKK K + ++ K KKK KK
Sbjct: 351 KPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 35.8 bits (83), Expect = 0.012
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+K KK + K KKKKKK + K E ++ K KKK KK
Sbjct: 349 TKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 35.4 bits (82), Expect = 0.019
Identities = 16/43 (37%), Positives = 20/43 (46%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KK +K K K KKKK K K + ++ K KKK K
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVK 392
Score = 34.2 bits (79), Expect = 0.037
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
++ +K + K KKKKKK K + ++ K KKK KK
Sbjct: 349 TKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 34.2 bits (79), Expect = 0.039
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KK ++ K K KKKKK K + ++ K KKK KK
Sbjct: 350 KKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 33.4 bits (77), Expect = 0.074
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
++ K+ K + KKKKKK K + ++ K KKK KK
Sbjct: 349 TKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 32.7 bits (75), Expect = 0.13
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
K+ KK K K KK KKK K + ++ K KKK+ +
Sbjct: 347 TATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQEAKSSGKKKVKK 393
Score = 28.4 bits (64), Expect = 2.7
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
V R +K + KK + + KK KK + K KKKKKK K + ++
Sbjct: 323 VEKYIERLKKAKTKKTQTRLDSFFTATKKPIKKSNSKAKLKKKKKKAGASAVPKSETSQE 382
Query: 216 EEN 218
++
Sbjct: 383 AKS 385
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 37.1 bits (87), Expect = 0.005
Identities = 16/64 (25%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR- 214
+A+ R+ E+K +E + K+ +K K+ ++KKEK ++++ K ++ +K+ ++ ++
Sbjct: 522 IASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKE 581
Query: 215 -KEE 217
K+E
Sbjct: 582 AKKE 585
Score = 34.4 bits (80), Expect = 0.041
Identities = 14/48 (29%), Positives = 29/48 (60%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ R+ +K K + + +K+ K ++K+KKKKK+K+K+++ K
Sbjct: 591 KELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEELK 638
Score = 32.1 bits (74), Expect = 0.24
Identities = 14/47 (29%), Positives = 29/47 (61%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
KE ++ ++ K + +K+ K +KK+KKKKK+K+K++++
Sbjct: 591 KELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEEL 637
Score = 30.2 bits (69), Expect = 0.99
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KKE + ++ ++ +K K + + +K+ K +KK+KKKKK K+E
Sbjct: 583 KKEADEIIKELRQLQKGGYASVKAHELIEARKRLNKANEKKEKKKKKQKEKQEE 636
Score = 29.8 bits (68), Expect = 1.1
Identities = 12/48 (25%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 172 EEKKKKKKKKKKKKNKKKKK-EKKKKKKKKKKKKKKKKKKKIMRKEEN 218
EE +++ ++K ++ K+ EK K++ ++KK+K ++++ K++ + E
Sbjct: 526 EELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEK 573
Score = 29.8 bits (68), Expect = 1.4
Identities = 14/55 (25%), Positives = 35/55 (63%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ EK K+E ++KK+K ++++ ++ EK+ ++ K+ KK+ + K +R+ +
Sbjct: 543 LKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQ 597
Score = 29.4 bits (67), Expect = 1.5
Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 35/93 (37%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKK------------------KNKKKKKE---------- 192
R+R K +KKE+KKKK+K+K+++ + KE
Sbjct: 613 RKRLNKANEKKEKKKKKQKEKQEELKVGDEVKYLSLGQKGEVLSIPDDKEAIVQAGIMKM 672
Query: 193 -------KKKKKKKKKKKKKKKKKKKIMRKEEN 218
+K +K KKKKKKK K K R
Sbjct: 673 KVPLSDLEKIQKPKKKKKKKPKTVKPKPRTVSL 705
>gnl|CDD|172341 PRK13808, PRK13808, adenylate kinase; Provisional.
Length = 333
Score = 36.8 bits (85), Expect = 0.005
Identities = 20/62 (32%), Positives = 23/62 (37%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
A ++K K KK K K K KK +K KK K KK KK K
Sbjct: 219 AKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAA 278
Query: 214 RK 215
K
Sbjct: 279 AK 280
Score = 36.4 bits (84), Expect = 0.007
Identities = 20/57 (35%), Positives = 26/57 (45%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
P A S ++ + K +K KKK K + KK + K KK KK KK KK
Sbjct: 206 PAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKK 262
Score = 36.0 bits (83), Expect = 0.010
Identities = 18/55 (32%), Positives = 21/55 (38%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K+ K K KK KK KK KK + KK KK K K K
Sbjct: 230 KAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKG 284
Score = 36.0 bits (83), Expect = 0.011
Identities = 18/59 (30%), Positives = 21/59 (35%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ A + KK + K KK KKK K KK K K KK KK
Sbjct: 197 ANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKT 255
Score = 34.9 bits (80), Expect = 0.025
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ A + + KK KK ++ KK K KK KK K K K K K K K K
Sbjct: 237 SAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAK 296
Score = 34.9 bits (80), Expect = 0.026
Identities = 21/60 (35%), Positives = 22/60 (36%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
S A KK K + KK KK KK KK K KK KK K K K
Sbjct: 226 VSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGA 285
Score = 34.5 bits (79), Expect = 0.032
Identities = 19/57 (33%), Positives = 24/57 (42%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ A S ++ K K ++ KK KK KK K KK KK K K K K
Sbjct: 231 AAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAK 287
Score = 34.1 bits (78), Expect = 0.043
Identities = 20/54 (37%), Positives = 22/54 (40%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+ KK KK K KK K K K K K K K K KKK +K
Sbjct: 252 AKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAA 305
Score = 33.7 bits (77), Expect = 0.058
Identities = 18/60 (30%), Positives = 23/60 (38%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ V+ + KK + K KK KK KK K+ K KK KK K K
Sbjct: 222 AAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKA 281
Score = 33.3 bits (76), Expect = 0.066
Identities = 19/60 (31%), Positives = 24/60 (40%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + + +K KK + KK KK K K K K K K K KKK KK
Sbjct: 245 AAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAA 304
Score = 33.3 bits (76), Expect = 0.081
Identities = 18/52 (34%), Positives = 21/52 (40%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ KK K K KK KK KK +K K KK KK K K +
Sbjct: 233 KTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKG 284
Score = 32.9 bits (75), Expect = 0.093
Identities = 21/60 (35%), Positives = 25/60 (41%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ A ++ KK KK + KK KK K K K K K K K KKK KK
Sbjct: 244 TAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKA 303
Score = 32.6 bits (74), Expect = 0.13
Identities = 19/57 (33%), Positives = 22/57 (38%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
S S ++ K K+ K K KK K KK KK K KK KK K
Sbjct: 220 KSAAKKVSKKKAAKTAVSAKKAAKTAAKAAKKAKKTAKKALKKAAKAVKKAAKKAAK 276
Score = 31.0 bits (70), Expect = 0.40
Identities = 15/46 (32%), Positives = 16/46 (34%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
KK + K KK K K KK KKK K KK
Sbjct: 195 GAANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKK 240
Score = 30.6 bits (69), Expect = 0.53
Identities = 18/47 (38%), Positives = 19/47 (40%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KK KK + K K K K K K KKK KK K K K
Sbjct: 268 KKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAK 314
Score = 30.2 bits (68), Expect = 0.85
Identities = 18/56 (32%), Positives = 23/56 (41%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
A + ++ KK K + K K K K K KKK KK K K K K+
Sbjct: 263 AAKAVKKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKR 318
Score = 29.5 bits (66), Expect = 1.3
Identities = 18/52 (34%), Positives = 21/52 (40%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K K + K K K KKK K K K K K+ K KK K + K
Sbjct: 279 AKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRGAKGKKAKKVTK 330
Score = 29.1 bits (65), Expect = 1.8
Identities = 13/41 (31%), Positives = 14/41 (34%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
KK K K KK + K KK KKK K
Sbjct: 196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAV 236
Score = 29.1 bits (65), Expect = 1.9
Identities = 15/45 (33%), Positives = 16/45 (35%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
KK K K KK K K KK KKK K +K
Sbjct: 196 AANAKKAAKTPAAKSGAKKASAKAKSAAKKVSKKKAAKTAVSAKK 240
Score = 28.7 bits (64), Expect = 2.1
Identities = 16/52 (30%), Positives = 19/52 (36%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+K KK + K K K K K +KK KK K K K R
Sbjct: 268 KKAAKKAAKAAAKAAKGAAKATKGKAKAKKKAGKKAAAGSKAKATAKAPKRG 319
>gnl|CDD|221028 pfam11208, DUF2992, Protein of unknown function (DUF2992). This
bacterial family of proteins has no known function.
However, the cis-regulatory yjdF motif, just upstream
from the gene encoding the proteins for this family, is
a small non-coding RNA, Rfam:RF01764. The yjdF motif is
found in many Firmicutes, including Bacillus subtilis.
In most cases, it resides in potential 5' UTRs of
homologues of the yjdF gene whose function is unknown.
However, in Streptococcus thermophilus, a yjdF RNA motif
is associated with an operon whose protein products
synthesise nicotinamide adenine dinucleotide (NAD+).
Also, the S. thermophilus yjdF RNA lacks typical yjdF
motif consensus features downstream of and including the
P4 stem. Thus, if yjdF RNAs are riboswitch aptamers, the
S. thermophilus RNAs might sense a distinct compound
that structurally resembles the ligand bound by other
yjdF RNAs. On the ohter hand, perhaps these RNAs have an
alternative solution forming a similar binding site, as
is observed with some SAM riboswitches.
Length = 132
Score = 35.3 bits (82), Expect = 0.006
Identities = 16/39 (41%), Positives = 31/39 (79%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K E ++ K++KKK+ +KK++EK++K++ K++KKK K +
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
Score = 28.4 bits (64), Expect = 1.5
Identities = 15/39 (38%), Positives = 28/39 (71%), Gaps = 4/39 (10%)
Query: 177 KKKKKKKKKNKKK----KKEKKKKKKKKKKKKKKKKKKK 211
K + ++ K+ KKK KKE++K++K++ K++KKK K +
Sbjct: 92 KLEHERNKQEKKKRSKEKKEEEKERKRQLKQQKKKAKHR 130
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 37.1 bits (86), Expect = 0.006
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K++ K +E ++K ++ + ++ KK ++ KK KK KK
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 36.4 bits (84), Expect = 0.010
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
++ K E+ ++K ++ + + +K ++ KK KK KK
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKAS 1215
Score = 34.5 bits (79), Expect = 0.039
Identities = 13/45 (28%), Positives = 21/45 (46%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
KE K EE ++K ++ + K+ ++ KK KK KK
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 34.5 bits (79), Expect = 0.045
Identities = 11/51 (21%), Positives = 23/51 (45%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K+ + ++ ++K ++ + KK ++ KK KK KK E
Sbjct: 1169 DKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASESET 1219
Score = 34.5 bits (79), Expect = 0.045
Identities = 11/43 (25%), Positives = 17/43 (39%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
D A R + ++ + E KK ++ K KK KK
Sbjct: 1172 DAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKA 1214
Score = 32.5 bits (74), Expect = 0.19
Identities = 11/47 (23%), Positives = 21/47 (44%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+E K ++ ++K + + E KK ++ KK KK +K
Sbjct: 1170 KEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASE 1216
Score = 31.4 bits (71), Expect = 0.37
Identities = 12/51 (23%), Positives = 25/51 (49%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K KE+ K ++ ++K ++ + + KK ++ KK KK + E
Sbjct: 1166 DKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKASE 1216
Score = 28.7 bits (64), Expect = 3.3
Identities = 11/53 (20%), Positives = 25/53 (47%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KE K +++ K ++ ++K + + + KK ++ KK K K+ +
Sbjct: 1163 KELDKLDKEDAKAEEAREKLQRAAARGESGAAKKVSRQAPKKPAPKKTTKKAS 1215
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 35.7 bits (83), Expect = 0.006
Identities = 15/53 (28%), Positives = 38/53 (71%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KKEK+++EE++ + ++ +++ + EK+ K K++K+++ ++K+K + KE+
Sbjct: 98 KKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQ 150
Score = 33.4 bits (77), Expect = 0.032
Identities = 10/57 (17%), Positives = 38/57 (66%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R+ KK++E++++++ + ++ +++++ ++ +K+ K K++K+++ + +KE
Sbjct: 91 RKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEIL 147
Score = 31.1 bits (71), Expect = 0.25
Identities = 9/50 (18%), Positives = 35/50 (70%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
++E+++ E ++ ++++ + +K+ + K++K+++ ++K+K+ K+ M+
Sbjct: 103 EEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152
Score = 30.3 bits (69), Expect = 0.46
Identities = 10/52 (19%), Positives = 35/52 (67%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+++E++++ E ++ ++++ + +K+ K K++K+++ ++K+K+ K K
Sbjct: 101 KEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152
>gnl|CDD|217756 pfam03839, Sec62, Translocation protein Sec62.
Length = 217
Score = 36.3 bits (84), Expect = 0.006
Identities = 18/64 (28%), Positives = 31/64 (48%)
Query: 149 FIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ AN + + K + K +K K K + ++ KK ++KK++KKK K
Sbjct: 15 ALESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPK 74
Query: 209 KKKI 212
KKK+
Sbjct: 75 KKKV 78
Score = 32.1 bits (73), Expect = 0.16
Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 8/67 (11%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKK--------KKKKKKKKKKKKKKKKK 211
+ K K K + K + K +K K K K ++KK++KKK KKK
Sbjct: 17 ESEKYKANKDKGNPEIYNKINSQDKAIEKFKLLIKAQMAERVKKLHSQEKKEEKKKPKKK 76
Query: 212 IMRKEEN 218
+ + N
Sbjct: 77 KVPLQVN 83
Score = 27.1 bits (60), Expect = 6.3
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 186 NKKKKKEKKKKKKKKKKKKKKKK 208
K K KK KK KKKKKKK+
Sbjct: 195 YKGDKSSAKKDKKSKKKKKKKRS 217
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 36.7 bits (85), Expect = 0.007
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+KK + + ++K + KKK K K + K +K K
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAA 247
Score = 35.6 bits (82), Expect = 0.013
Identities = 15/52 (28%), Positives = 21/52 (40%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K+K + E KKK + KKK + K K + K +K K K
Sbjct: 200 KKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAA 251
Score = 35.6 bits (82), Expect = 0.014
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ E KKK + KKK + K K + K +K K +K K
Sbjct: 204 EAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKAA 256
Score = 33.2 bits (76), Expect = 0.084
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K E KKK + + KKK + K+K + K K + K
Sbjct: 193 AKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKA 236
Score = 30.9 bits (70), Expect = 0.46
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+++ + E KK + KKK + + K + KKK + + KKK + KKK
Sbjct: 168 KKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 30.5 bits (69), Expect = 0.54
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E KKK E + KK + K K + + K + KKK + + KKK
Sbjct: 164 AAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKK 210
Score = 30.5 bits (69), Expect = 0.71
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E K + KKK + + K K + KKK + K K +
Sbjct: 190 EAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEA 234
Score = 30.2 bits (68), Expect = 0.76
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+KK + E KK + KKK + + K + KKK + + KKK K++
Sbjct: 167 AKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 30.2 bits (68), Expect = 0.93
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
R +++KK+ EE K+ K+K+ + K K K + + K+
Sbjct: 110 RLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKR 155
Score = 29.8 bits (67), Expect = 1.2
Identities = 10/57 (17%), Positives = 29/57 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R ++ ++++ +++KK+ ++ K+ K+K+ ++ K K K + + R
Sbjct: 102 RLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAA 158
Score = 29.0 bits (65), Expect = 1.8
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 168 KKKKEEKKKKK-----KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KKK E + K KKK + + KKK + KKK + K K
Sbjct: 184 KKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAA 232
Score = 28.6 bits (64), Expect = 2.3
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
KK E KKK + + KK + K+K + + K + KKK
Sbjct: 161 KKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
Score = 28.2 bits (63), Expect = 3.5
Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 5/60 (8%)
Query: 162 RRRKKEKKKKEEKKKKKK-----KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++ E KKK E + K KKK + KKK + KKK + K K K
Sbjct: 177 KKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAAAEAKA 236
Score = 28.2 bits (63), Expect = 3.7
Identities = 12/55 (21%), Positives = 39/55 (70%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+RKK+++++ E+ ++K+ ++++ K+ +KE+ +++KK+ ++ K+ + +K+
Sbjct: 80 QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQA 134
Score = 28.2 bits (63), Expect = 3.7
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ ++K+ EE K K K + + K KK + KKK + + +K
Sbjct: 124 AKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAA 180
Score = 28.2 bits (63), Expect = 3.9
Identities = 10/50 (20%), Positives = 26/50 (52%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ R K+ +K++ +++KK+ ++ + K+K+ ++ K K K
Sbjct: 99 EQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAK 148
Score = 28.2 bits (63), Expect = 3.9
Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 166 KEKKKKEEKKKK-----KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KK E KKK K + KK + E KKK + KKK + K K
Sbjct: 175 AAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAEAKAAAAKAA 231
Score = 27.8 bits (62), Expect = 4.2
Identities = 10/48 (20%), Positives = 29/48 (60%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
++K+ +++ K+ +K++ ++ KK+ +E K+ K+K+ ++ K
Sbjct: 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAK 140
Score = 27.8 bits (62), Expect = 4.3
Identities = 11/48 (22%), Positives = 29/48 (60%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++K+ ++E K+ +K++ + +KK+ E+ K+ K+K+ ++ K
Sbjct: 93 QQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAK 140
Score = 27.5 bits (61), Expect = 6.3
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+R KK + KKK + + K + KKK + + K + KKK
Sbjct: 154 KRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
Score = 27.5 bits (61), Expect = 6.6
Identities = 10/56 (17%), Positives = 37/56 (66%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+R ++++KKKE+++ ++ ++K+ +++ K+ +K++ +++KK+ ++ +
Sbjct: 75 KRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALK 130
Score = 27.1 bits (60), Expect = 7.4
Identities = 8/40 (20%), Positives = 14/40 (35%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+KK + + K + K +K K +K K
Sbjct: 216 KKKAAAEAKAAAAKAAAEAKAAAEKAAAAKAAEKAAAAKA 255
Score = 27.1 bits (60), Expect = 8.3
Identities = 11/60 (18%), Positives = 38/60 (63%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
S +R ++ KKK++++ ++ ++K+ + ++ K+ +K++ +++KK+ ++ K ++
Sbjct: 72 KSAKRAEEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQ 131
Score = 27.1 bits (60), Expect = 9.0
Identities = 12/58 (20%), Positives = 38/58 (65%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+R++K++++ +E ++K+ ++++ K +K++ +++KK+ ++ K+ K + EE
Sbjct: 80 QRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEA 137
>gnl|CDD|225324 COG2604, COG2604, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 594
Score = 36.6 bits (85), Expect = 0.007
Identities = 13/56 (23%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK--KKKKKIMRKEEN 218
K+K K K ++K K +K KK K+ + K ++I+ K ++
Sbjct: 453 DKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFETDALKLQEILEKVDS 508
Score = 35.8 bits (83), Expect = 0.013
Identities = 13/51 (25%), Positives = 18/51 (35%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
KE +K K K K K ++K K +K KK K +
Sbjct: 445 KEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEFETD 495
Score = 34.6 bits (80), Expect = 0.031
Identities = 13/48 (27%), Positives = 19/48 (39%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K+ +K +K K K K +EK K +K KK K+
Sbjct: 445 KEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKEF 492
Score = 32.0 bits (73), Expect = 0.26
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 166 KEKKKKEEKKK---KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
E KE +K K K K K ++K K +K KK I
Sbjct: 440 IELPFKEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDFIKE 491
Score = 30.0 bits (68), Expect = 1.1
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E K+ +K K+K K K ++K K + ++K +
Sbjct: 440 IELPFKEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNND 487
Score = 29.3 bits (66), Expect = 1.6
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKK--KKKKKKKKKKKKKKKKIMRKEEN 218
E K+ +K K K K ++K K +KI + +
Sbjct: 440 IELPFKEVCEKLLDKDKNKPFIKLILLSNNSQEKAVLKLLQKIKKNNDF 488
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 36.4 bits (84), Expect = 0.008
Identities = 11/63 (17%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK--KKKKKKKKKKKKKKKIMRK 215
+ + + K +K+E +K++ +++ N++ ++E+ + + ++ K KKK ++
Sbjct: 334 KTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAAVKAKKKGLIDA 393
Query: 216 EEN 218
N
Sbjct: 394 SPN 396
Score = 33.3 bits (76), Expect = 0.074
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 17/76 (22%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKN-----------------KKKKKEKKKKKKKKKK 202
H +R + ++K++EKK ++ + + KK +K + K +
Sbjct: 287 HAEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKAR 346
Query: 203 KKKKKKKKKIMRKEEN 218
KK+ +K++ +E N
Sbjct: 347 KKEIAQKRRAAEREIN 362
Score = 33.3 bits (76), Expect = 0.081
Identities = 10/57 (17%), Positives = 28/57 (49%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
H + +K + EK + K +KK+ K++ E++ ++ ++++ + + R
Sbjct: 326 HAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAAAMARARARRAA 382
Score = 29.4 bits (66), Expect = 1.6
Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 20/81 (24%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKK--------------------KKKKNKKKKKEKKKK 196
A + R+K+K+KK ++ + KK + +K + K +K
Sbjct: 288 AEQRAQYREKQKEKKAFLWTLRRNRLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARK 347
Query: 197 KKKKKKKKKKKKKKKIMRKEE 217
K+ +K++ +++ ++E
Sbjct: 348 KEIAQKRRAAEREINREARQE 368
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 35.4 bits (82), Expect = 0.009
Identities = 15/57 (26%), Positives = 48/57 (84%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R++R+ E++++EE+KK ++K++ ++ ++++ E++++KKK+++++K+++++ +EE
Sbjct: 18 RQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEE 74
Score = 33.1 bits (76), Expect = 0.059
Identities = 16/57 (28%), Positives = 48/57 (84%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
RR+++E +++E +++KK ++K++ +K+++E +++++KKK+++++K++++ RKE+
Sbjct: 16 ARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQ 72
Score = 31.2 bits (71), Expect = 0.27
Identities = 14/50 (28%), Positives = 42/50 (84%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
R RKK ++K+E ++K++++ ++++ KKK++E++K+++++ +K++++ +K
Sbjct: 28 REERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEK 77
Score = 31.2 bits (71), Expect = 0.27
Identities = 15/60 (25%), Positives = 42/60 (70%), Gaps = 7/60 (11%)
Query: 165 KKEKKKKEEKKKKKK-------KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K++ K EEK+ +++ +++++K ++K+E ++K++++ +++++KKK++ RKE
Sbjct: 5 AKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKER 64
Score = 31.2 bits (71), Expect = 0.30
Identities = 12/58 (20%), Positives = 49/58 (84%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
RR++++ ++++ E++KK ++K++ + K++++ +++++KKK+++++K+++++ +++E
Sbjct: 17 RRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEE 74
Score = 28.9 bits (65), Expect = 1.6
Identities = 12/51 (23%), Positives = 36/51 (70%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KK +K+ K ++K+ ++ +++ +E++++++KK ++K++ ++K+ EE
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEE 51
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 36.2 bits (84), Expect = 0.012
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K + KK+ KKK +K K K K K KKKKKK+K I
Sbjct: 497 LKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSI 544
Score = 35.0 bits (81), Expect = 0.025
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K KK++ KKK K K NK K K KKKKKK+K I ++
Sbjct: 502 SVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSI 557
Score = 33.5 bits (77), Expect = 0.078
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K K KK+ KKK+ K + K K K KKKKKK+ ++
Sbjct: 498 KTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDD 548
Score = 32.3 bits (74), Expect = 0.18
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K +K+ KKK K +K K K K KKKKKK+K
Sbjct: 500 TSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDL 546
Score = 32.3 bits (74), Expect = 0.18
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+E+ ++ KK ++K +N +K+ E KK KK+ K + K+KK+ + E+
Sbjct: 409 EEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELED 461
Score = 31.6 bits (72), Expect = 0.34
Identities = 17/61 (27%), Positives = 22/61 (36%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+P + K KK+ +KK K K K K KKKKKK+K
Sbjct: 493 ENPWLKTTSSVGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLID 552
Query: 213 M 213
Sbjct: 553 E 553
Score = 30.8 bits (70), Expect = 0.63
Identities = 16/54 (29%), Positives = 31/54 (57%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ +K KKE K + K+KK+ + ++ + E++ K +K K K+ +K +EE
Sbjct: 435 ESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEE 488
Score = 30.4 bits (69), Expect = 0.78
Identities = 16/54 (29%), Positives = 32/54 (59%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KK KK+ + + K+KK+ +++ + ++E K +K K K+ +K +K +EE
Sbjct: 437 KKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEEL 490
Score = 29.6 bits (67), Expect = 1.4
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
KK+KKK+K+K++ K + KK+K+K KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 29.3 bits (66), Expect = 1.6
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+K+KKK+K+K++ K + KK+K+K KK K
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLK 657
Score = 29.3 bits (66), Expect = 1.8
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
KK+KKK+ +K++ K + KK+K+K KK K I
Sbjct: 627 KKRKKKRKRKRRFLTKIEGVKKEKRKDKKLKNVI 660
Score = 28.5 bits (64), Expect = 3.3
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++E ++E ++ KK ++K + EK+ + KK KK+ K + K+K EE
Sbjct: 402 EGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEE 457
Score = 28.1 bits (63), Expect = 4.2
Identities = 15/55 (27%), Positives = 22/55 (40%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+++ KKK K K K K K KK+KKK+K ++ I
Sbjct: 503 VGKSAKKQDSKKKSSSKLDKAANKISKAAVKVKKKKKKEKSIDLDDDLIDEEDSI 557
Score = 27.3 bits (61), Expect = 8.4
Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKK-------NKKKKKEKKKKKKKKKKKKK 205
+ K EK + K+ +K +K+++ N K K KK+ K
Sbjct: 454 DEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSAKKQDSK 513
Query: 206 KKKKKKIMRKE 216
KK K+ +
Sbjct: 514 KKSSSKLDKAA 524
Score = 27.3 bits (61), Expect = 8.4
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ ++++ EE KK ++K + +KE + KK KK+ K + K+KK+ +EE
Sbjct: 402 EGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEEL 459
Score = 27.3 bits (61), Expect = 8.6
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+E KK ++K + +K + KK KK+ K + K+KK+ +++++ +EE
Sbjct: 408 DEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKKESDEEEELEDEEE 464
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 35.7 bits (82), Expect = 0.014
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R RRKK++K++ KK K KK++K K+K + KK K ++ K
Sbjct: 561 RERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSAFFAKLQETKA 611
Score = 35.4 bits (81), Expect = 0.022
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
RR+KK K++ +K K KK++K K+K KK K ++ K
Sbjct: 562 ERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSAFFAKLQETKAV 612
Score = 32.7 bits (74), Expect = 0.16
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
++ K +K + + + K ++++ KK+K+ KK K KK++K K+K+
Sbjct: 542 KKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDG 593
Score = 32.3 bits (73), Expect = 0.19
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ K + + +K ++++KKK+K+ KK K KK++K K+K K
Sbjct: 548 EKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSA 601
Score = 31.9 bits (72), Expect = 0.22
Identities = 16/50 (32%), Positives = 30/50 (60%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++ K +K K E + K ++++K K+K++ KK K KK++K K+K
Sbjct: 542 KKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKV 591
Score = 31.9 bits (72), Expect = 0.25
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ K +E +KKK+K++ KK K K+++K K+K KK K
Sbjct: 554 LDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSAFFAK 605
Score = 31.1 bits (70), Expect = 0.45
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ +K ++ KKK+K++ KK K KKE+K K+K KK + +E
Sbjct: 554 LDRTDKNRERRKKKRKRRAAKKAVTKAKKERKIGKEKVDGVAKKSSSAFFAKLQE 608
Score = 29.6 bits (66), Expect = 1.5
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
EE KK K +K K + + +K ++++KKK+K++ KK K+E
Sbjct: 538 EEIYKKMKAIEKSKTELDRTDKNRERRKKKRKRRAAKKAVTKAKKE 583
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 34.7 bits (80), Expect = 0.015
Identities = 23/54 (42%), Positives = 31/54 (57%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+KE K+ E+K+ K KK+KK KK+KK +K KKK K K KK +K
Sbjct: 99 QKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKTTT 152
Score = 32.8 bits (75), Expect = 0.061
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
EK++KE K+ ++K+ K K+KK++K+KK +K KKK K K K+
Sbjct: 96 EKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKK 145
Score = 32.4 bits (74), Expect = 0.083
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++++ KE ++K+ K KK+K +KK+K+ +K KKK K K K K+
Sbjct: 98 EQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKATKKT 150
Score = 32.4 bits (74), Expect = 0.085
Identities = 22/71 (30%), Positives = 36/71 (50%)
Query: 148 IFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
I + P + ++ E+K+ + KK+KK+KK+KK +K +KK K K KK
Sbjct: 88 INLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKLAKKKSTKTTKNTTKKAT 147
Query: 208 KKKKIMRKEEN 218
KK ++E
Sbjct: 148 KKTTTKKEEGK 158
>gnl|CDD|215329 PLN02610, PLN02610, probable methionyl-tRNA synthetase.
Length = 801
Score = 35.5 bits (82), Expect = 0.016
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
A S R + + + +K K+ KKK + KKK+ KK K K +++ + R
Sbjct: 585 AGSQADRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKKAGGGGKSKAAAEREIDVSR 642
Score = 32.1 bits (73), Expect = 0.23
Identities = 19/74 (25%), Positives = 30/74 (40%)
Query: 144 TMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
T E +F D ++R + + + + + + KK K KKK KKK+ KK
Sbjct: 564 TPEPLFKELKDEEVEAYREKFAGSQADRAARAEAAEAKKLAKQLKKKALSDGGKKKQGKK 623
Query: 204 KKKKKKKKIMRKEE 217
K K + E
Sbjct: 624 AGGGGKSKAAAERE 637
>gnl|CDD|224668 COG1754, COG1754, Uncharacterized C-terminal domain of
topoisomerase IA [General function prediction only].
Length = 298
Score = 35.5 bits (82), Expect = 0.016
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
E++ K KK KK KK KK KK K KK KK
Sbjct: 254 ERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 33.1 bits (76), Expect = 0.080
Identities = 18/42 (42%), Positives = 19/42 (45%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
RR K K+ KK K KK KK KK K KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 33.1 bits (76), Expect = 0.081
Identities = 16/44 (36%), Positives = 20/44 (45%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+++ + KK KK K KK KK KK K KK KK
Sbjct: 253 AERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 32.0 bits (73), Expect = 0.19
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
E++ K KK K + KK KK KK K KK +K
Sbjct: 253 AERRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
Score = 31.2 bits (71), Expect = 0.32
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K KK KK K K+ KK KK K KK K
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAK 295
Score = 30.8 bits (70), Expect = 0.42
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ K KK KK K K K+ KK K KK KK
Sbjct: 255 RRAKGGPGKKPAKKATAAKAKKTTAKKAAAKKAAKTKKAAKK 296
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 35.4 bits (82), Expect = 0.016
Identities = 13/56 (23%), Positives = 41/56 (73%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
A +++R+ E+++ E + ++ ++ ++ ++++KE++KK+ K++K+++K+ +KI
Sbjct: 155 AELRQQQRQFEQRRNAELAETQRLEEAERRRREEKERRKKQDKERKQREKETAEKI 210
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 34.6 bits (80), Expect = 0.017
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K+ K ++ ++ + KE++ + +KK+ KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 33.5 bits (77), Expect = 0.047
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
E+ EE + K+++ + +KKE KKKK
Sbjct: 165 LEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 33.1 bits (76), Expect = 0.069
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
A + +E +E + K+++ +KK+ KKKK
Sbjct: 157 AEWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 32.3 bits (74), Expect = 0.10
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
K+ K EE ++ + +++ E +KK+ KKKK
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 29.6 bits (67), Expect = 1.0
Identities = 7/38 (18%), Positives = 19/38 (50%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
+ K ++ ++ + K++ + ++K+ KKKK
Sbjct: 159 WKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 35.7 bits (82), Expect = 0.017
Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
Query: 155 PVANSHRR--RRKKEKKKKEEKKKKKKK---KKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ R ++ KEK +++ K + + ++ K++E+K KKKK
Sbjct: 789 TTIKAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKP 848
Query: 210 KKI 212
K+
Sbjct: 849 YKV 851
Score = 34.2 bits (78), Expect = 0.053
Identities = 14/71 (19%), Positives = 27/71 (38%)
Query: 146 EGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
E F +P S + RK K + K+K +K +K+ K + + +
Sbjct: 762 EEEFEYPRMYEEASGKSVRKVNTAVLSTTIKAAARAKQKPKEKGPNDKEIKIESPSVETE 821
Query: 206 KKKKKKIMRKE 216
++ R+E
Sbjct: 822 GERCTIKQREE 832
Score = 32.6 bits (74), Expect = 0.14
Identities = 7/44 (15%), Positives = 18/44 (40%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K + K+K K K ++ K + + + ++ K ++
Sbjct: 792 KAAARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGI 835
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 35.6 bits (83), Expect = 0.017
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
K E +K+EE +K K+ + K + ++KK+ K K+ + KKI ++E
Sbjct: 174 KFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
Score = 34.4 bits (80), Expect = 0.042
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K + +KEE+ +K K+ + KK + EKKK+ K K+ + K + KEE
Sbjct: 173 EKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEE 225
Score = 34.0 bits (79), Expect = 0.059
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KE+ +K E +K+++ +K K + +K + +KKK+ K K+ + ++
Sbjct: 168 SKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKK 220
Score = 32.5 bits (75), Expect = 0.20
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
++ + EK KE + KK + +KK + K + K+ + KK K++ +
Sbjct: 178 QKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPM 229
Score = 31.7 bits (73), Expect = 0.27
Identities = 16/70 (22%), Positives = 30/70 (42%)
Query: 148 IFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
F +K+E+ +K K+ + KK + KKK+ + K+ + KK
Sbjct: 162 DFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKI 221
Query: 208 KKKKIMRKEE 217
K++I +E
Sbjct: 222 DKEEITPMKE 231
Score = 31.7 bits (73), Expect = 0.33
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K K+ E KK + +KKK+ KE + KK K++ K+I +E
Sbjct: 184 EKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKKIDKEEITPMKEINEEERR 238
Score = 30.6 bits (70), Expect = 0.78
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ K++ +K + +K+ + +K K+ + KK + +KKK+ K +E
Sbjct: 165 IDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEG 213
Score = 28.3 bits (64), Expect = 3.5
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K E K++ +K + K+++ EK K+ + KK + +KKK + +
Sbjct: 158 ILKIDFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDP 210
Score = 27.9 bits (63), Expect = 5.3
Identities = 11/47 (23%), Positives = 26/47 (55%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+++ +K + +K++ +K ++ + KK + +KKK+ K KE
Sbjct: 168 SKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGP 214
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 35.3 bits (82), Expect = 0.018
Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKK-KKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
S +K E+ ++E +K++K+ K ++ ++ K K KK K + K+ +K+ +
Sbjct: 236 SSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLA 295
Score = 29.5 bits (67), Expect = 1.3
Identities = 12/65 (18%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 161 RRRRKKEKKKKEEKKK--------KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
R+ +K+++E K K K KK K + K +K + + +++ ++ K +
Sbjct: 247 RQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPL 306
Query: 213 MRKEE 217
+
Sbjct: 307 AFRFP 311
Score = 28.4 bits (64), Expect = 3.7
Identities = 12/60 (20%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKK----KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
R R++ +K++K+ K+++ K K KK K + K+ +K + + +++ + +
Sbjct: 245 RLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGK 304
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 34.8 bits (80), Expect = 0.019
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K+EK+ K KK K K KK KK E +KK + + + +KK
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 31.3 bits (71), Expect = 0.22
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
E+K+ K KK K K KK KK + +KK + + + + K+
Sbjct: 108 EEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 30.9 bits (70), Expect = 0.32
Identities = 15/52 (28%), Positives = 24/52 (46%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KE+K+ + KK K K KK KK + +KK + + + +KK
Sbjct: 107 KEEKEGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAV 158
Score = 30.1 bits (68), Expect = 0.53
Identities = 13/40 (32%), Positives = 19/40 (47%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+ KK K K KK KK + +KK E + + +KK
Sbjct: 113 KVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKA 152
Score = 27.0 bits (60), Expect = 7.0
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KK+K K +K KK + +K + + + +KK + ++ +EE
Sbjct: 117 KKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEE 169
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 35.3 bits (81), Expect = 0.019
Identities = 16/60 (26%), Positives = 27/60 (45%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A + +++ + E K EK K + + K K KK + ++K +KKK K K
Sbjct: 189 AAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAA 248
Score = 33.8 bits (77), Expect = 0.053
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ + K K E+K + ++K KKK K K K K ++K
Sbjct: 208 KAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERK 255
Score = 33.4 bits (76), Expect = 0.065
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+K K + E K K +KK + +K EKKK K K K K RK
Sbjct: 205 EKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERK 255
Score = 33.4 bits (76), Expect = 0.073
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ + E K K EKK + ++K +KKK K K K K ++K
Sbjct: 208 KAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKADKAAAAAKAAERK 255
Score = 29.9 bits (67), Expect = 0.90
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
R+ E+KKK E K K + K K + KKK ++ K ++ K K
Sbjct: 139 RKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAK 186
Score = 29.9 bits (67), Expect = 0.94
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A + + + E KKK E+ K ++ K K + +KK + + K +K K + + K
Sbjct: 158 AEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKA 217
Query: 217 E 217
E
Sbjct: 218 E 218
Score = 29.5 bits (66), Expect = 1.4
Identities = 14/57 (24%), Positives = 31/57 (54%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ + ++K+++E+ +K ++KKK K K + K K + KKK ++ + E
Sbjct: 125 KQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAE 181
Score = 29.5 bits (66), Expect = 1.4
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 165 KKEKKKKE-EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KKK E E K +K K + K K EKK + ++K +KKK K +
Sbjct: 190 AAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEKKKAAAKAKAD 243
Score = 28.8 bits (64), Expect = 2.6
Identities = 13/56 (23%), Positives = 36/56 (64%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ +KE+ K +E++K+ ++ +K+ ++K+++++ +K ++KKK + K E
Sbjct: 104 KQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAE 159
Score = 28.4 bits (63), Expect = 3.0
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ +E K K E KKK + + +K K + + K K +KK +
Sbjct: 177 AKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEA 223
Score = 28.0 bits (62), Expect = 4.7
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ + EK+ + E+K+++++ +K ++KKK + K K + K K + +K E
Sbjct: 118 KQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAE 174
Score = 27.6 bits (61), Expect = 6.1
Identities = 11/55 (20%), Positives = 35/55 (63%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ ++ KK ++++KKK+++ ++ K+ E+++ K+ +K++ K ++++K
Sbjct: 64 YGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQK 118
Score = 27.2 bits (60), Expect = 6.5
Identities = 12/56 (21%), Positives = 38/56 (67%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ ++++KKKEE+ ++ K K+ +++ K+ +K++ K ++++K+ ++ + + E
Sbjct: 75 KKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLE 130
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 35.5 bits (82), Expect = 0.020
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK-------KKKKKKKKKKKKKKKIMRKE 216
R +E+K+ + + + K+KK N + ++K + KK+K KK+ K E
Sbjct: 1523 RNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEAE 1582
Score = 32.0 bits (73), Expect = 0.24
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
A KEKK E ++K +++ + KK+K KK+ K +
Sbjct: 1531 AGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEA 1581
Score = 32.0 bits (73), Expect = 0.29
Identities = 14/37 (37%), Positives = 26/37 (70%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K + K ++K K+KKKK+KKK+++ K+++K +I
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARI 767
Score = 31.6 bits (72), Expect = 0.35
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
K + K + ++K KKKKKK KKK++E K+++K +
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 31.2 bits (71), Expect = 0.51
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K + K + K KKK+KK+KKK+++ K+++K + +I
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIEI 769
Score = 30.8 bits (70), Expect = 0.64
Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 9/62 (14%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKK---------KKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+R + +KE + E + K+KK +K ++ E KK+K KK+ K +
Sbjct: 1522 NRNQEEKEPAGQGELESDKEKKGNLESVLSNQEKNIEEDYAESDIKKRKNKKQYKSNTEA 1581
Query: 211 KI 212
++
Sbjct: 1582 EL 1583
Score = 30.5 bits (69), Expect = 0.70
Identities = 14/36 (38%), Positives = 25/36 (69%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
K+ + K ++K KKKKKEKKK+++ K+++K +
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 30.5 bits (69), Expect = 0.85
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
+ E K + ++K KKKKKK+ KK+++ K+++K +
Sbjct: 731 KDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
Score = 29.7 bits (67), Expect = 1.3
Identities = 16/50 (32%), Positives = 29/50 (58%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
KK + K + K + +++ KKKKKK+KKK+++ K+++ R E
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 29.7 bits (67), Expect = 1.4
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ +K +KKK N+KK E + + +++K+ + + + K+ N
Sbjct: 1494 GNENVNKKINQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGN 1545
Score = 29.3 bits (66), Expect = 1.8
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KK + K+ + K ++K KKKKKK+KKK++ ++EE
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEK 764
Score = 28.9 bits (65), Expect = 2.3
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 141 LWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKE 192
+ M+ IF + + A +EK KK++KK+KKK+++ K+ +K + E
Sbjct: 717 ISGLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKARIE 768
Score = 28.9 bits (65), Expect = 2.7
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+KKK +KK + + +++KE + + + K+KK + ++ +E
Sbjct: 1503 NQKKKGFIPSNEKKSIEIENRNQEEKEPAGQGELESDKEKKGNLESVLSNQEK 1555
Score = 28.5 bits (64), Expect = 2.9
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
R + +K +EKKK NK K + KK + K++ +++RK
Sbjct: 1038 RNQIEKITKEKKKITNTINISPNKTSYDSKIIESSKKIWQILKRRNTRLIRK 1089
Score = 28.5 bits (64), Expect = 3.3
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KK + K + K + ++K KKKKKK+KKK+++ R+E+
Sbjct: 719 GLMKKIFRNWNGKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEK 764
>gnl|CDD|237855 PRK14900, valS, valyl-tRNA synthetase; Provisional.
Length = 1052
Score = 35.4 bits (81), Expect = 0.020
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK--K 209
+ A + +K KK KK KK KK KK KK +K KK KK +
Sbjct: 986 AATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPAR 1045
Query: 210 KKIMRK 215
K RK
Sbjct: 1046 KAAGRK 1051
Score = 33.8 bits (77), Expect = 0.073
Identities = 23/55 (41%), Positives = 25/55 (45%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
RR KK + KKK KK K KK KK KKK KK KK+ RK
Sbjct: 979 RRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARK 1033
Score = 32.3 bits (73), Expect = 0.22
Identities = 17/45 (37%), Positives = 21/45 (46%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+K KK KKK KK KK +K KK KK +K +K
Sbjct: 1008 KKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRKA 1052
Score = 31.9 bits (72), Expect = 0.25
Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 2/66 (3%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK--KKKKKKKKK 209
A + +KK KK KK KK KK KKK KK KK +K KK
Sbjct: 981 SVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAA 1040
Query: 210 KKIMRK 215
KK RK
Sbjct: 1041 KKPARK 1046
Score = 30.7 bits (69), Expect = 0.67
Identities = 22/60 (36%), Positives = 28/60 (46%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
VA + R+ ++ KK + KKK KK KK KK KK KKK KK +K
Sbjct: 970 VAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKK 1029
Score = 30.3 bits (68), Expect = 0.76
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
KK KK KKK KK K +K KK KK +K +K
Sbjct: 1008 KKAAAKKAAAKKKVAKKAPAKKVARKPAAKKAAKKPARKAAGRKA 1052
Score = 30.3 bits (68), Expect = 0.86
Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 3/58 (5%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK---KKKKKKIMRK 215
R +K + KKK KK KK KK KK KKK KK KK +K K
Sbjct: 980 RSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAKKKVAKKAPAKKVARKPAAK 1037
Score = 29.2 bits (65), Expect = 2.3
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKK--KKEKKKKKKKKKKKKKKKKKK 210
+ S + + +K + KK + KKK KK KK KK KK K
Sbjct: 959 AATAVASGIEKVAEAVRKTVRRSVKKAAATRAAMKKKVAKKAPAKKAAAKKAAAKKAAAK 1018
Query: 211 KIMRKE 216
K + K+
Sbjct: 1019 KKVAKK 1024
>gnl|CDD|218188 pfam04641, Rtf2, Replication termination factor 2. It is vital for
effective cell-replication that replication is not
stalled at any point by, for instance, damaged bases.
Rtf2 stabilizes the replication fork stalled at the
site-specific replication barrier RTS1 by preventing
replication restart until completion of DNA synthesis by
a converging replication fork initiated at a flanking
origin. The RTS1 element terminates replication forks
that are moving in the cen2-distal direction while
allowing forks moving in the cen2-proximal direction to
pass through the region. Rtf2 contains a C2HC2 motif
related to the C3HC4 RING-finger motif, and would appear
to fold up, creating a RING finger-like structure but
forming only one functional Zn2+ ion-binding site.
Length = 254
Score = 34.6 bits (80), Expect = 0.022
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + ++++ +KKKKKKKKK KKN + + +
Sbjct: 173 KARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQ 220
Score = 33.9 bits (78), Expect = 0.040
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R ++KK+KKKK+ KK + + + + KK KKK +N
Sbjct: 180 RAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDN 237
Score = 33.5 bits (77), Expect = 0.050
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ R +E++ K++KKKKKKK KK E + + +K
Sbjct: 173 KARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKL 227
Score = 31.9 bits (73), Expect = 0.18
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E K ++++ KKKKKKK KK KK + +
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTEL 214
Score = 31.9 bits (73), Expect = 0.19
Identities = 14/54 (25%), Positives = 19/54 (35%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K + ++E KKKKKKKKKK K + + E
Sbjct: 172 LKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAK 225
Score = 31.9 bits (73), Expect = 0.20
Identities = 14/57 (24%), Positives = 20/57 (35%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R KK+KKKK++K KK + + + KK K R
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIA 234
Score = 31.5 bits (72), Expect = 0.27
Identities = 13/47 (27%), Positives = 20/47 (42%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K + E+++ KKKKKKKK K KK + +
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELS 215
Score = 31.2 bits (71), Expect = 0.33
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+EE + K + ++++ KKKKK+KKKK KK +
Sbjct: 166 EEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTE 213
Score = 30.4 bits (69), Expect = 0.56
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 162 RRRKKEKKKKEEKKKKK---------KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
R K+KKKK++KK KK + + + KK KKK+
Sbjct: 178 EERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDN 237
Query: 213 MRKE 216
+ E
Sbjct: 238 EKSE 241
Score = 28.5 bits (64), Expect = 2.8
Identities = 12/48 (25%), Positives = 22/48 (45%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E K + ++++ KK KKKKK+K KK + + + +
Sbjct: 169 VELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTELSS 216
Score = 28.1 bits (63), Expect = 3.2
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 161 RRRRKKEKKKK---------EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
++++KK+KK K E + + E KK KKK+ +K +
Sbjct: 183 KKKKKKKKKTKKNNATGSSAEATVSSAVPTELSSGAGQVGEAKKLKKKRSIAPDNEKSE 241
Score = 26.9 bits (60), Expect = 8.1
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
++E + + + ++++ KKKKK KKKK +K +
Sbjct: 165 TEEEVELLKARLEEERAKKKKKKKKKKTKKNNATGSSAEATVSSAVPTE 213
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 34.7 bits (80), Expect = 0.028
Identities = 11/52 (21%), Positives = 31/52 (59%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E + + + + K + K+K K ++ K+K++K+ +++ K++K ++K+
Sbjct: 256 ESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLA 307
Score = 31.6 bits (72), Expect = 0.30
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 8/62 (12%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKK--------KKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
N +RR++ E++ KEEK+ KKK K+ +K+K +KK+++K++ +KKK K
Sbjct: 284 NKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKLK 343
Query: 210 KK 211
++
Sbjct: 344 RR 345
Score = 30.8 bits (70), Expect = 0.51
Identities = 14/54 (25%), Positives = 32/54 (59%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K + ++K K ++ K+K+ K+ ++E K++K+ KKK + + K+I ++
Sbjct: 268 PINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQ 321
Score = 30.1 bits (68), Expect = 0.89
Identities = 15/54 (27%), Positives = 36/54 (66%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
R K++++K+ E++ K++K+ KKK + + K+ K+ +K+K + +KK+ ++
Sbjct: 283 RNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKER 336
Score = 27.0 bits (60), Expect = 9.4
Identities = 23/59 (38%), Positives = 30/59 (50%), Gaps = 9/59 (15%)
Query: 167 EKKKKEEKKKKKKKKKKKK---------NKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ E KKK++KK KK N+ K KK+ KKK KKKK K++ RKE
Sbjct: 46 DTTGDEATIKKKRRKKLKKPLKSDEILENRSKVPAPSVKKRHVKKKSKKKKSKQVSRKE 104
>gnl|CDD|225651 COG3109, ProQ, Activator of osmoprotectant transporter ProP [Signal
transduction mechanisms].
Length = 208
Score = 34.1 bits (78), Expect = 0.029
Identities = 10/52 (19%), Positives = 25/52 (48%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
H R++ E K + + ++ +++ KK++ EK ++ + K K +
Sbjct: 98 HARKQLAEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPR 149
Score = 29.8 bits (67), Expect = 0.78
Identities = 6/47 (12%), Positives = 21/47 (44%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ + + ++ E++ KK+++ K + + K K +++
Sbjct: 105 EAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 28.7 bits (64), Expect = 1.8
Identities = 5/48 (10%), Positives = 23/48 (47%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+ + R + ++ +++ KK+++ + ++ + K K +++
Sbjct: 104 AEAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
Score = 28.7 bits (64), Expect = 2.2
Identities = 7/47 (14%), Positives = 23/47 (48%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ + + ++ E++ KK+++ +K E+ + K K +++
Sbjct: 105 EAKARVQAQRAEQQAKKREEAPAAGEKPTAERPATAARPKPKAPREE 151
>gnl|CDD|115057 pfam06375, BLVR, Bovine leukaemia virus receptor (BLVR). This
family consists of several bovine specific leukaemia
virus receptors which are thought to function as
transmembrane proteins, although their exact function is
unknown.
Length = 561
Score = 34.7 bits (79), Expect = 0.030
Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 155 PVANSH----RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
P+A+S ++ R E K EK +KK K KKK++K+K+K++ K KKK+ +
Sbjct: 166 PLADSEKLPVQKHRNAETSKSPEKGDVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGF 225
Query: 211 K 211
K
Sbjct: 226 K 226
Score = 33.1 bits (75), Expect = 0.11
Identities = 21/79 (26%), Positives = 37/79 (46%)
Query: 126 QYEIVTVSWPDHNPVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKK 185
++ + ++ D E ++ V+ + E K E ++ KK K KKK
Sbjct: 224 GFKSLLLALDDSPASAASVAEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKK 283
Query: 186 NKKKKKEKKKKKKKKKKKK 204
++K+KE+KKKKKK +
Sbjct: 284 KQRKEKEEKKKKKKHHHHR 302
Score = 31.6 bits (71), Expect = 0.28
Identities = 11/33 (33%), Positives = 25/33 (75%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
K EE+++ +++ +K K +KKK+EK+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 30.8 bits (69), Expect = 0.64
Identities = 16/61 (26%), Positives = 32/61 (52%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A+ + ++ K + ++ KK+ K KK+K++K+K++KKKKKK + +
Sbjct: 248 ASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSD 307
Query: 217 E 217
Sbjct: 308 G 308
Score = 30.4 bits (68), Expect = 0.74
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+D + ++ + +E K + ++ KK K KKK+++K+K++KKKKKK +
Sbjct: 245 ADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHR 302
Score = 30.4 bits (68), Expect = 0.82
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+AN+ + + + + ++ KK K+KKKK+ K+K++KKKKKK +
Sbjct: 250 LANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHHHRCHHSDGG 309
Query: 216 EE 217
E
Sbjct: 310 AE 311
Score = 29.3 bits (65), Expect = 1.8
Identities = 9/32 (28%), Positives = 25/32 (78%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K ++++ +++ EK K++KKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRH 114
Score = 29.3 bits (65), Expect = 1.9
Identities = 9/33 (27%), Positives = 24/33 (72%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
K ++E + +++ +K K++ KK++KEK+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 29.3 bits (65), Expect = 1.9
Identities = 9/33 (27%), Positives = 25/33 (75%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
K +EE++ +++ +K K+ KKK++++K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 28.5 bits (63), Expect = 3.1
Identities = 10/38 (26%), Positives = 24/38 (63%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKK 190
SD RR +++ +K++++KKK++K+K+ ++
Sbjct: 78 SDQYVKLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 28.1 bits (62), Expect = 3.7
Identities = 9/33 (27%), Positives = 26/33 (78%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K +++++ +++ +K K+EKKK++K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 28.1 bits (62), Expect = 4.2
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKK 189
D A + ++ K+K+KKE++K++ K KKK+ K
Sbjct: 191 DVPAVEKKSKKPKKKEKKEKEKERDKDKKKEVEGFK 226
Score = 28.1 bits (62), Expect = 4.4
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
VA + + + K + + KK K KKKK++K+K++KKKKKK
Sbjct: 241 SVAEADEASLANTVSGTAPDSEPDEPKDAEAEETKKSPKHKKKKQRKEKEEKKKKKKHHH 300
Query: 215 KE 216
Sbjct: 301 HR 302
Score = 27.7 bits (61), Expect = 5.2
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKE 192
R R++ EK K+E+KK++K+K+ ++++ E
Sbjct: 89 RHRQRLEKDKREKKKREKEKRGRRRHHSLGTE 120
Score = 27.7 bits (61), Expect = 5.3
Identities = 8/31 (25%), Positives = 22/31 (70%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
+E+++ ++ +K K++KKK+ K+K+ ++
Sbjct: 85 EEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 27.7 bits (61), Expect = 5.4
Identities = 9/33 (27%), Positives = 24/33 (72%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
K E++++ ++ +K K++KKK +K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 27.3 bits (60), Expect = 7.1
Identities = 9/43 (20%), Positives = 27/43 (62%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKK 194
P P+++ + + ++ + ++ +K K++KKK++K K+ ++
Sbjct: 73 PGLPMSDQYVKLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
Score = 27.3 bits (60), Expect = 7.8
Identities = 8/40 (20%), Positives = 30/40 (75%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K +++++++++ ++ K++KKK++K+K+ +++ + E +
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESD 122
Score = 27.0 bits (59), Expect = 9.0
Identities = 8/42 (19%), Positives = 28/42 (66%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K +++++ + + +K +++KKK++K+K+ +++ +E+
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHHSLGTESDED 124
Score = 27.0 bits (59), Expect = 9.3
Identities = 8/33 (24%), Positives = 24/33 (72%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
K E++++ +++ +K ++KKK +K+K+ +++
Sbjct: 83 KLEEERRHRQRLEKDKREKKKREKEKRGRRRHH 115
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 33.5 bits (77), Expect = 0.030
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
RKK K+K K K KK++ +K K+K++ K + +K++ + +KKK K
Sbjct: 65 RKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKL 117
Score = 32.7 bits (75), Expect = 0.052
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
RR + K KK++ EK+K+K+++ K + +KE+ + +KKK + K K++KKIM
Sbjct: 72 LRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKKIMFA 127
Score = 28.1 bits (63), Expect = 2.1
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+KK K+K + K K +K++ +K+K+K+++ K KE
Sbjct: 65 RKKAKEKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERA 106
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 33.4 bits (77), Expect = 0.032
Identities = 15/46 (32%), Positives = 35/46 (76%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+R +KE++K+E+++K++K+K+ K +K+E++K+ ++ +K K K
Sbjct: 17 KREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKP 62
Score = 33.4 bits (77), Expect = 0.032
Identities = 12/52 (23%), Positives = 37/52 (71%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
R E+K++E++++K++K++K++ +K+ + +K++++K+ ++ +K K
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNK 61
Score = 32.7 bits (75), Expect = 0.054
Identities = 13/56 (23%), Positives = 39/56 (69%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R K + E+K+++K+++K++ ++K++++K+ K +K++++K+ + + K +N
Sbjct: 5 RDKSGRIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKN 60
>gnl|CDD|221937 pfam13148, DUF3987, Protein of unknown function (DUF3987). A
family of uncharacterized proteins found by clustering
human gut metagenomic sequences.
Length = 379
Score = 34.5 bits (80), Expect = 0.033
Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 139 PVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
V M+ + + + R ++E K+ E +K+ + +KK KK KK KK K
Sbjct: 54 AVDKLAMKPL-----EEIEEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKD 108
Query: 199 KKKKKKK 205
++ ++
Sbjct: 109 EEALAEE 115
Score = 34.5 bits (80), Expect = 0.033
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ ++ +EE K+ + +K+ + +KK EKK KK KK K ++ ++++ E
Sbjct: 68 EELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAE 122
Score = 33.8 bits (78), Expect = 0.048
Identities = 12/40 (30%), Positives = 26/40 (65%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
EE+ +++ +++ K+ + +K+ + +KK +KK KK KK
Sbjct: 67 EEELREEYEEELKEYEAEKEIWEAEKKGLEKKAKKAIKKG 106
Score = 32.2 bits (74), Expect = 0.20
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
+ EK+ E +KK +KK KK KK K E+ ++ + + ++ + R
Sbjct: 82 EAEKEIWEAEKKGLEKKAKKAIKKGKDEEALAEELLELEAEEPEPPLRPR 131
>gnl|CDD|236172 PRK08173, PRK08173, DNA topoisomerase III; Validated.
Length = 862
Score = 34.6 bits (80), Expect = 0.034
Identities = 15/50 (30%), Positives = 19/50 (38%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
E + +E K KK K + +K KK KK KK RK
Sbjct: 812 EFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 34.3 bits (79), Expect = 0.045
Identities = 14/47 (29%), Positives = 17/47 (36%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+E K KK K K +K KK KK KK +K
Sbjct: 815 PREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 33.9 bits (78), Expect = 0.055
Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 9/66 (13%)
Query: 159 SHRRRRK------KEKKKK---EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
S R R K+ K E + ++ K KK K K +K KK K
Sbjct: 790 SSRTGRNFKAYLVKQPDGKIGFEFEPREPKAAAAKKTAAKATAAAATKAEKAAAKKAPAK 849
Query: 210 KKIMRK 215
K +K
Sbjct: 850 KTAAKK 855
Score = 31.2 bits (71), Expect = 0.51
Identities = 13/46 (28%), Positives = 15/46 (32%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
R K KK K K + KK KK KK +K
Sbjct: 816 REPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 30.4 bits (69), Expect = 0.70
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
R K K+ K K K K+ KK KK +K
Sbjct: 816 REPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
Score = 29.6 bits (67), Expect = 1.4
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
R + KK K K +K KK KK KK +K
Sbjct: 816 REPKAAAAKKTAAKATAAAATKAEKAAAKKAPAKKTAAKKTAARKT 861
>gnl|CDD|240520 cd13156, KOW_RPL6, KOW motif of Ribosomal Protein L6. RPL6
contains KOW motif that has an extra ribosomal role as
an oncogenic. KOW domain is known as an RNA-binding
motif that is shared so far among some families of
ribosomal proteins, the essential bacterial
transcriptional elongation factor NusG, the eukaryotic
chromatin elongation factor Spt5, the higher eukaryotic
KIN17 proteins and Mtr4. .
Length = 152
Score = 33.3 bits (77), Expect = 0.035
Identities = 15/36 (41%), Positives = 26/36 (72%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K+KKKKKKK K+ + ++KKKK +++K+ +K +
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAV 117
Score = 32.1 bits (74), Expect = 0.086
Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K+KKKKKKKKK + +EKKKK +++K+ +K
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 32.1 bits (74), Expect = 0.10
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K K + K+KKKKKKKK + + E+KKKK +++K+ +K
Sbjct: 72 KVPKLNDAYFKRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 31.4 bits (72), Expect = 0.15
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K+KKK KKKKKE + ++KKKK +++K+ +
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKA 116
Score = 31.0 bits (71), Expect = 0.21
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 6/52 (11%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK------KKKKKKKIMRK 215
K+++KKKKKKK+ + +KKKK +++K+ +K KK +++
Sbjct: 82 KRKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVPLLKG 133
Score = 26.7 bits (60), Expect = 6.1
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
R+++KK+KKK+ E ++KKKK ++K+ +K KK K ++
Sbjct: 83 RKKKKKKKKKEGEFFEEKKKKYVVSEERKEDQKAVDAALLAAIKKVPLLKGYLK 136
Score = 26.7 bits (60), Expect = 7.4
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+KKKK+KKKK+ + ++KKKK RKE
Sbjct: 83 RKKKKKKKKKEGEFFEEKKKKYVVSEERKE 112
>gnl|CDD|219564 pfam07771, TSGP1, Tick salivary peptide group 1. This contains a
group of peptides derived from a salivary gland cDNA
library of the tick Ixodes scapularis. Also present are
peptides from a related tick species, Ixodes ricinus.
They are characterized by a putative signal peptide
indicative of secretion and conserved cysteine residues.
Length = 120
Score = 32.9 bits (75), Expect = 0.036
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKN 186
PS P + K +KKKK+ KK KK KK KK+
Sbjct: 86 PSHPDDHPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 30.6 bits (69), Expect = 0.27
Identities = 15/21 (71%), Positives = 15/21 (71%)
Query: 191 KEKKKKKKKKKKKKKKKKKKK 211
K KKKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKK 119
Score = 30.2 bits (68), Expect = 0.33
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 185 KNKKKKKEKKKKKKKKKKKKKK 206
K KKKKK+ KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 0.39
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 189 KKKEKKKKKKKKKKKKKKKKKK 210
K K+KKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 0.40
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKK 204
K K KKKK +K KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.8 bits (67), Expect = 0.40
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 186 NKKKKKEKKKKKKKKKKKKKKKK 208
K KKK+KK KK KK KK KK
Sbjct: 98 EKPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.5 bits (66), Expect = 0.70
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 188 KKKKEKKKKKKKKKKKKKKKKK 209
K KK+KKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.1 bits (65), Expect = 0.79
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 190 KKEKKKKKKKKKKKKKKKKKKK 211
K +KKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.1 bits (65), Expect = 0.79
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 182 KKKKNKKKKKEKKKKKKKKKKK 203
K KK KKK K+ KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 29.1 bits (65), Expect = 0.88
Identities = 14/20 (70%), Positives = 14/20 (70%)
Query: 192 EKKKKKKKKKKKKKKKKKKK 211
EK KKKKKK KK KK KK
Sbjct: 98 EKPKKKKKKSKKTKKPKKSS 117
Score = 27.9 bits (62), Expect = 1.8
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 184 KKNKKKKKEKKKKKKKKKKKKK 205
K KKKKK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.9 bits (62), Expect = 2.1
Identities = 14/22 (63%), Positives = 14/22 (63%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKK 202
K KKK KK KK KK KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 27.5 bits (61), Expect = 2.6
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKK 201
K KKKK K KK +K KK KK
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
Score = 26.4 bits (58), Expect = 7.2
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKK 179
HP +P ++++K +K KK +K KK
Sbjct: 92 HPPEPTEKPKKKKKKSKKTKKPKKSSKKD 120
Score = 26.4 bits (58), Expect = 7.6
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 195 KKKKKKKKKKKKKKKKKIMRKE 216
K KKKKKK KK KK KK +K+
Sbjct: 99 KPKKKKKKSKKTKKPKKSSKKD 120
>gnl|CDD|177089 CHL00189, infB, translation initiation factor 2; Provisional.
Length = 742
Score = 34.4 bits (79), Expect = 0.037
Identities = 25/87 (28%), Positives = 33/87 (37%), Gaps = 27/87 (31%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKK---------------------------KKKNKKKK 190
++ K+ KK + K+KKK KKK + K K
Sbjct: 62 KFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPK 121
Query: 191 KEKKKKKKKKKKKKKKKKKKKIMRKEE 217
EK KKK K KKKKK + K+E
Sbjct: 122 TEKLKKKITVNKSTNKKKKKVLSSKDE 148
Score = 34.0 bits (78), Expect = 0.050
Identities = 17/57 (29%), Positives = 22/57 (38%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ D NS + + K K +K KKK K KKKKK K + K
Sbjct: 95 NFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIK 151
Score = 31.3 bits (71), Expect = 0.44
Identities = 19/40 (47%), Positives = 22/40 (55%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+ KK +K KK KK K K KK K K+KKK KKK
Sbjct: 47 DINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKK 86
Score = 31.0 bits (70), Expect = 0.51
Identities = 19/50 (38%), Positives = 22/50 (44%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
++ K K EK KKK K NKKKKK K + K K K I
Sbjct: 115 MRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPKSISIHS 164
Score = 30.6 bits (69), Expect = 0.60
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ KK +K KKNKK K K KK K K+KKK KK + +++
Sbjct: 47 DINKKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDD 92
Score = 30.6 bits (69), Expect = 0.68
Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 150 IHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNK-KKKKEKKKKKKKKKKKKKKKK 208
+H D N + ++ +K K K K KKK K KKKKK K
Sbjct: 87 LHIDDDYDNFFDSKNNSKQFAGPLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSK 146
Query: 209 KKKI 212
+ I
Sbjct: 147 DELI 150
Score = 30.2 bits (68), Expect = 0.88
Identities = 15/43 (34%), Positives = 19/43 (44%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
RK + K ++ KKK K K KKK K + K K K
Sbjct: 116 RKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 29.8 bits (67), Expect = 1.3
Identities = 16/50 (32%), Positives = 19/50 (38%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+K K K E+ KKK K KKKK K + K K K
Sbjct: 109 PLAISLMRKPKPKTEKLKKKITVNKSTNKKKKKVLSSKDELIKYDNNKPK 158
Score = 29.8 bits (67), Expect = 1.3
Identities = 18/37 (48%), Positives = 23/37 (62%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
KK +K ++K KK K K+ KK K K+KKK KKK
Sbjct: 50 KKLHEKLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKK 86
Score = 27.9 bits (62), Expect = 5.0
Identities = 19/41 (46%), Positives = 21/41 (51%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K KK KK K K KK K K+KKK KKK I +N
Sbjct: 55 KLDKKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDN 95
Score = 27.1 bits (60), Expect = 9.5
Identities = 16/45 (35%), Positives = 18/45 (40%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+K KK K K KK K K+KKK KKK K
Sbjct: 58 KKNKKFNKTDDLKDSKKTKLKQKKKIKKKLHIDDDYDNFFDSKNN 102
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 34.3 bits (78), Expect = 0.039
Identities = 12/57 (21%), Positives = 36/57 (63%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
PV R + + + + +E+ K +++K++ ++ ++ KE++ KK+K+++++ +K
Sbjct: 1006 PVPPECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIH 1062
Score = 33.9 bits (77), Expect = 0.056
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+ R + ++ KEE+ KK+K+++++ +K + K+ KK+ KKK+
Sbjct: 1032 KERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 33.9 bits (77), Expect = 0.059
Identities = 13/52 (25%), Positives = 33/52 (63%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
R K++++KE + ++ K+++ KK+K+ +++ +K K+ KK++ +K
Sbjct: 1025 RIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKK 1076
Score = 33.6 bits (76), Expect = 0.072
Identities = 14/51 (27%), Positives = 31/51 (60%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R + ++EK++ E ++ K+++ KK K++++ +K K+ KK+ KK
Sbjct: 1025 RIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKK 1075
Score = 33.2 bits (75), Expect = 0.12
Identities = 13/41 (31%), Positives = 28/41 (68%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
S +R +++E KKE++++++ +K N K+ +K+ KKK+
Sbjct: 1037 SLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 32.8 bits (74), Expect = 0.13
Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 161 RRRRKKEKKKKEEKKKKK---KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ R KE+ K +E+K++ ++ K+++ KK+KE++++ +K K+ KK ++K
Sbjct: 1018 KDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKK 1075
Score = 32.4 bits (73), Expect = 0.17
Identities = 13/48 (27%), Positives = 29/48 (60%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+KE+ + ++ K+++ KK+K ++++ K K+ KK+ KKK+
Sbjct: 1030 EEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 32.0 bits (72), Expect = 0.23
Identities = 11/52 (21%), Positives = 28/52 (53%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ + E ++ ++++ KK+K+++ + +K K+ KK+ KKK+
Sbjct: 1026 IKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLKKKR 1077
Score = 31.6 bits (71), Expect = 0.34
Identities = 13/51 (25%), Positives = 34/51 (66%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
R K E K + K++ K +++K++ + ++ K+++ KK+K+++++ +K I
Sbjct: 1011 CREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTI 1061
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 33.8 bits (78), Expect = 0.039
Identities = 10/56 (17%), Positives = 36/56 (64%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R ++ +++EE+K+ ++++++ K + ++ + K+K K+ +K++ +++ + N
Sbjct: 117 RFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRAAN 172
Score = 32.3 bits (74), Expect = 0.13
Identities = 14/68 (20%), Positives = 39/68 (57%), Gaps = 10/68 (14%)
Query: 160 HRRRRKKE----------KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
HR +KE +K+ ++ ++++++K+++++++ + K + ++ + K+K
Sbjct: 95 HRVDSEKEDERYEITSDVRKQLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQK 154
Query: 210 KKIMRKEE 217
K M+KEE
Sbjct: 155 AKEMQKEE 162
Score = 30.8 bits (70), Expect = 0.42
Identities = 13/66 (19%), Positives = 34/66 (51%), Gaps = 11/66 (16%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK-----------KKKKKK 208
+R ++E+++ K + ++ + K K K+ +K++ ++ + + +KKKK
Sbjct: 127 EEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHRAANATALAAIGGRKKKK 186
Query: 209 KKKIMR 214
++ MR
Sbjct: 187 RRITMR 192
Score = 30.0 bits (68), Expect = 0.64
Identities = 8/49 (16%), Positives = 33/49 (67%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ ++E++K++E+++++ + K ++ + K+K K+ +K++ ++ + +
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
Score = 28.8 bits (65), Expect = 1.8
Identities = 9/49 (18%), Positives = 34/49 (69%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ R++E+K+ EE++++ + K ++++ + ++K K+ +K++ ++ + +
Sbjct: 121 QLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMRHR 169
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 34.5 bits (79), Expect = 0.043
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+R RR+ + ++K +K+ +KN+ + KEK KK++ K +EN
Sbjct: 3 YRNRREANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQEN 61
Score = 27.2 bits (60), Expect = 7.8
Identities = 17/68 (25%), Positives = 35/68 (51%), Gaps = 6/68 (8%)
Query: 157 ANSHRRRRKKEKK-KKEEKKKKKKKKKKKKNKKK-----KKEKKKKKKKKKKKKKKKKKK 210
AN + R +EK +K+++K + + K+K +KK+ + K++ ++ K +
Sbjct: 9 ANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIADEV 68
Query: 211 KIMRKEEN 218
K KEE+
Sbjct: 69 KKSTKEES 76
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 34.1 bits (79), Expect = 0.044
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
E++ K+ K + ++KEKKK+KKK KKKK K + KI
Sbjct: 382 EQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKI 421
Score = 31.8 bits (73), Expect = 0.26
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E+ ++E K+ K + +K+KK++KKK KKKK K + K K++++
Sbjct: 379 EQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATR 430
Score = 31.4 bits (72), Expect = 0.38
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ ++ +++ K+ K ++K+KKK+KKK KKKK K K
Sbjct: 375 LQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKI 421
Score = 29.5 bits (67), Expect = 1.5
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
++ E+ +++ K+ K + E+K+KKK+KKK KKKK K +
Sbjct: 375 LQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGK 420
Score = 29.1 bits (66), Expect = 2.3
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K + ++K+KKK+KKKNKKKK + + K K K+ +
Sbjct: 389 KAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATR 430
Score = 28.7 bits (65), Expect = 2.3
Identities = 14/39 (35%), Positives = 24/39 (61%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
++E K+ + + ++K+K K+KKK KKKK K + K
Sbjct: 382 EQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGK 420
Score = 28.7 bits (65), Expect = 2.3
Identities = 15/48 (31%), Positives = 29/48 (60%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ ++ +++ K+ K + ++K+KKK+KKK KKKK K+ R +
Sbjct: 375 LQRVEQLEQELKQLKAQPVGVAPEQKEKKKEKKKNKKKKYKVPRGKIY 422
>gnl|CDD|233352 TIGR01310, L7, 60S ribosomal protein L7, eukaryotic. This model
describes the eukaryotic 60S (cytosolic) ribosomal
protein L7 and paralogs that may or may not also be L7.
Human, Drosophila, and Arabidopsis all have both a
typical L7 and an L7-related paralog. This family is
designated subfamily rather than equivalog to reflect
these uncharacterized paralogs. Members of this family
average ~ 250 residues in length, somewhat longer than
the archaeal L30P/L7E homolog (~ 155 residues) and much
longer than the related bacterial/organellar form (~ 60
residues).
Length = 235
Score = 33.9 bits (78), Expect = 0.044
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
KK+K ++ + K+ K KKK KKK+K R E
Sbjct: 5 KKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAE 40
Score = 32.3 bits (74), Expect = 0.12
Identities = 13/59 (22%), Positives = 32/59 (54%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++R+ +++ + K+ K KKK K K+K K+ + K+ +K +++ ++ R +
Sbjct: 4 LKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKK 62
Score = 30.4 bits (69), Expect = 0.55
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
E KK+K +++ + K+ K KKK KKK+K K+
Sbjct: 1 ELLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKR 38
Score = 29.6 bits (67), Expect = 1.1
Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 161 RRRRKKEKKK-KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
R+ R++ + ++ K KKK KKK+ K+ + K+ +K +++ + K++ +K
Sbjct: 7 RKARQELAVQVAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKP 63
Score = 29.3 bits (66), Expect = 1.3
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K+ K K++ KKK+K K+ + KE +K +++ + K+ KK
Sbjct: 17 VAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPG 64
Score = 29.3 bits (66), Expect = 1.5
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
E KK+K +++ + K+ K KKK KKK+K K+
Sbjct: 1 ELLLKKRKARQELAVQVAKQAKAKKKANKKKRKIYFKR 38
Score = 26.9 bits (60), Expect = 8.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K+ K KK+ KKK+K K+ K+ +K +++ + K+ KK K
Sbjct: 17 VAKQAKAKKKANKKKRKIYFKRAESFVKEYRKAEREIIRLKRLAKKPGKF 66
>gnl|CDD|241486 cd13332, FERM_C_JAK1, Janus kinase 1 FERM domain C-lobe. JAK1 is a
tyrosine kinase protein essential in signaling type I
and type II cytokines. It interacts with the gamma chain
of type I cytokine receptors to elicit signals from the
IL-2 receptor family, the IL-4 receptor family, the
gp130 receptor family, ciliary neurotrophic factor
receptor (CNTF-R), neurotrophin-1 receptor (NNT-1R) and
Leptin-R). It also is involved in transducing a signal
by type I (IFN-alpha/beta) and type II (IFN-gamma)
interferons, and members of the IL-10 family via type II
cytokine receptors. JAK (also called Just Another
Kinase) is a family of intracellular, non-receptor
tyrosine kinases that transduce cytokine-mediated
signals via the JAK-STAT pathway. The JAK family in
mammals consists of 4 members: JAK1, JAK2, JAK3 and
TYK2. JAKs are composed of seven JAK homology (JH)
domains (JH1-JH7) . The C-terminal JH1 domain is the
main catalytic domain, followed by JH2, which is often
referred to as a pseudokinase domain, followed by
JH3-JH4 which is homologous to the SH2 domain, and
lastly JH5-JH7 which is a FERM domain. Named after
Janus, the two-faced Roman god of doorways, JAKs possess
two near-identical phosphate-transferring domains; one
which displays the kinase activity (JH1), while the
other negatively regulates the kinase activity of the
first (JH2). The FERM domain has a cloverleaf tripart
structure (FERM_N, FERM_M, FERM_C/N, alpha-, and
C-lobe/A-lobe,A-lobe, B-lobe, C-lobe/F1, F2, F3). The
C-lobe/F3 within the FERM domain is part of the PH
domain family. The FERM domain is found in the
cytoskeletal-associated proteins such as ezrin, moesin,
radixin, 4.1R, and merlin. These proteins provide a link
between the membrane and cytoskeleton and are involved
in signal transduction pathways. The FERM domain is also
found in protein tyrosine phosphatases (PTPs) , the
tyrosine kinases FAK and JAK, in addition to other
proteins involved in signaling. This domain is
structurally similar to the PH and PTB domains and
consequently is capable of binding to both peptides and
phospholipids at different sites.
Length = 198
Score = 33.3 bits (76), Expect = 0.052
Identities = 15/24 (62%), Positives = 16/24 (66%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKK 198
KKKK K KK K K KK E KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 30.6 bits (69), Expect = 0.39
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKE 192
EKKKK + KK K K KK ++KKK +E
Sbjct: 90 EKKKKGKSKKNKLKGKKDEDKKKARE 115
Score = 30.6 bits (69), Expect = 0.45
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
++K +KK+K K KK K K KK + KKK
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKA 113
Score = 29.4 bits (66), Expect = 1.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++K +KKKK K KK K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 29.0 bits (65), Expect = 1.4
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKK 200
KKKK K KKNK K K+ + KKK +
Sbjct: 91 KKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 28.3 bits (63), Expect = 2.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKK 194
S RR+ +K++K K KK K K K + KK+ +
Sbjct: 79 SWRRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.5 bits (61), Expect = 5.0
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKK 185
P + +++K + KK + K KK + KKK +
Sbjct: 84 PATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.1 bits (60), Expect = 5.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
++K +KK K K K+ K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
Score = 27.1 bits (60), Expect = 6.3
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++K +K+KK K KK K K KK + KK R+ N
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAREGWN 118
Score = 26.7 bits (59), Expect = 7.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
++K +K KK K +K K K KK + KKK +
Sbjct: 81 RRKPATTAVEKKKKGKSKKNKLKGKKDEDKKKAR 114
>gnl|CDD|216807 pfam01956, DUF106, Integral membrane protein DUF106. This
archaebacterial protein family has no known function.
Members are predicted to be integral membrane proteins.
Length = 168
Score = 33.0 bits (76), Expect = 0.055
Identities = 17/52 (32%), Positives = 32/52 (61%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
RK EK +K EK+ +K+ ++ +KN K KK +K++++ + +K+ M K
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMDMMK 91
Score = 31.9 bits (73), Expect = 0.15
Identities = 10/42 (23%), Positives = 26/42 (61%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+K +K +K++K +K+ + +K K KK +K+++ + ++
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMED 81
Score = 30.3 bits (69), Expect = 0.44
Identities = 13/38 (34%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI-MRKEE 217
+K +K +K++KE +K+ ++ +K K KK R+EE
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEE 77
Score = 28.0 bits (63), Expect = 2.5
Identities = 10/50 (20%), Positives = 31/50 (62%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R+ +K +K+++E +K+ ++ +K +K K+ +K++++ + +K+
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQKEMMMDM 89
Score = 26.5 bits (59), Expect = 9.9
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+K +K +K++ + +K+ ++ +K K KK +K++ E+
Sbjct: 40 RKMEKYQKREKEIQKRARELRKNGDKLSPKKFEKRQEELMEDQ 82
>gnl|CDD|217884 pfam04086, SRP-alpha_N, Signal recognition particle, alpha subunit,
N-terminal. SRP is a complex of six distinct
polypeptides and a 7S RNA that is essential for
transferring nascent polypeptide chains that are
destined for export from the cell to the translocation
apparatus of the endoplasmic reticulum (ER) membrane.
SRP binds hydrophobic signal sequences as they emerge
from the ribosome, and arrests translation.
Length = 272
Score = 33.2 bits (76), Expect = 0.067
Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
S + R K +E ++ KK K + +K K K KK KK
Sbjct: 153 ESSPSSTPNSSRPSTPHLLKAKEGPSRRAKKAAKLSSTASSGDEKSPKSKAAPKKAGKK- 211
Query: 211 KIMRK 215
MRK
Sbjct: 212 --MRK 214
Score = 28.6 bits (64), Expect = 2.3
Identities = 13/55 (23%), Positives = 27/55 (49%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
S ++ + + + E+ KK KK ++K KE K+K++KK ++ +
Sbjct: 99 KESKKQAKSPKAMRTFEESKKSKKTVDSMIERKPKEPGLKRKQRKKAQESATSPE 153
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase.
Length = 553
Score = 33.4 bits (77), Expect = 0.071
Identities = 10/38 (26%), Positives = 19/38 (50%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K KK+ K K+ +++K K++ K K + +K
Sbjct: 10 KNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 33.4 bits (77), Expect = 0.078
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
A S+ K KK K K+ +++K K + K K + +K
Sbjct: 1 AESNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 33.4 bits (77), Expect = 0.083
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
E K KK+ K K+ ++ K K+E K K + +K
Sbjct: 6 EPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 32.7 bits (75), Expect = 0.14
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK 195
+P++ + ++R K K+ +EEK K++ K K +K
Sbjct: 4 NGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRK 47
Score = 30.0 bits (68), Expect = 1.0
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEK 193
+ ++ +E+K +E+ K K + +K
Sbjct: 17 LKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAA 50
Score = 29.6 bits (67), Expect = 1.3
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
E K KK+ K K+ ++EK K++ K K + +
Sbjct: 6 EPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAA 50
Score = 27.6 bits (62), Expect = 6.2
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 160 HRRRRKKEKKKKEE-KKKKKKKKKKKKNKKKKKE 192
++ ++EK KEE K K +++K
Sbjct: 18 KAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAA 51
>gnl|CDD|149438 pfam08374, Protocadherin, Protocadherin. The structure of
protocadherins is similar to that of classic cadherins
(pfam00028), but particularly on the cytoplasmic domains
they also have some unique features. They are expressed
in a variety of organisms and are found in high
concentrations in the brain where they seem to be
localised mainly at cell-cell contact sites. Their
expression seems to be developmentally regulated.
Length = 223
Score = 32.9 bits (75), Expect = 0.074
Identities = 18/44 (40%), Positives = 27/44 (61%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
R R+ E+KK + KK+ + N++ K++KKKK KKKK K
Sbjct: 61 RYCRQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
Score = 29.0 bits (65), Expect = 1.4
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 175 KKKKKKKKKKKNKKKKKE----KKKKKKKKKKKKKKKKKKK 211
++ ++KK + KK+ ++ ++ K+KKKKK KKKK K
Sbjct: 64 RQAERKKGYQAGKKETEDWFSPNQENKQKKKKKDKKKKSPK 104
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 33.0 bits (76), Expect = 0.074
Identities = 24/49 (48%), Positives = 37/49 (75%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
++ KE+K+K EKKK +++KK+++N KK+K+ KK KKKKK KKK +
Sbjct: 158 SKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKGRIL 206
Score = 29.6 bits (67), Expect = 0.86
Identities = 22/54 (40%), Positives = 42/54 (77%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+RK+++KKK +K+ K++K+K +K K ++++K+++ KK+K KK KKKK +K+
Sbjct: 149 KRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKK 202
Score = 29.6 bits (67), Expect = 0.89
Identities = 24/55 (43%), Positives = 40/55 (72%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+R+ K++KK K+E K++K+K +KKK +++KK ++ KK+K KK KKKKK +
Sbjct: 149 KRKEKQKKKSKKEWKERKEKVEKKKAERQKKREENLKKRKDDKKNKKKKKAKKKG 203
Score = 27.3 bits (61), Expect = 4.8
Identities = 17/54 (31%), Positives = 34/54 (62%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+RR+K +++K KK+K+K+ KKK++ +K + ++ K ++ K KKK +
Sbjct: 10 QRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63
>gnl|CDD|218148 pfam04557, tRNA_synt_1c_R2, Glutaminyl-tRNA synthetase,
non-specific RNA binding region part 2. This is a
region found N terminal to the catalytic domain of
glutaminyl-tRNA synthetase (EC 6.1.1.18) in eukaryotes
but not in Escherichia coli. This region is thought to
bind RNA in a non-specific manner, enhancing
interactions between the tRNA and enzyme, but is not
essential for enzyme function.
Length = 83
Score = 31.2 bits (71), Expect = 0.078
Identities = 16/44 (36%), Positives = 19/44 (43%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K + KKKKK KKKK E K KK + + M E
Sbjct: 17 KTEADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSEGAMFMEG 60
Score = 26.2 bits (58), Expect = 4.8
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
+KKKK++KKK + K KK E +
Sbjct: 20 ADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 26.2 bits (58), Expect = 5.3
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
KKKK++KKKK + KK + +
Sbjct: 20 ADLVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
Score = 25.8 bits (57), Expect = 6.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+KKKKKKKKK + K KK + +
Sbjct: 22 LVKKKKKKKKKKAEDTAATAKAKKATAEDVSE 53
>gnl|CDD|211393 cd11381, NSA2, pre-ribosomal protein NSA2 (Nop seven-associated 2).
NSA2 appears to be a protein required for the
maturation of 27S pre-rRNA in yeast; it has been
characterized in mammalian cells as a nucleolar protein
that might play a role in the regulation of the cell
cycle and in cell proliferation.
Length = 257
Score = 33.0 bits (76), Expect = 0.079
Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 160 HRRRRKKEKKKKEEKKKKKKK----KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R+RKKE ++ ++ KK +K K K NKK+ KEK + KK K +++ K+K
Sbjct: 18 EERKRKKEAREPHKRSKKAQKLRGLKAKLYNKKRYKEKIQMKKTIKMHEERNVKQK 73
>gnl|CDD|236768 PRK10819, PRK10819, transport protein TonB; Provisional.
Length = 246
Score = 33.1 bits (76), Expect = 0.080
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
K + K + K K K K KK ++ K+E K + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 32.0 bits (73), Expect = 0.18
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
K E K K K K K K KK +E+ K++ K + +
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 30.4 bits (69), Expect = 0.50
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K + K K K K K K KK +++ K++ K + + E
Sbjct: 93 PKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPRPASPFENT 135
Score = 30.4 bits (69), Expect = 0.61
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KE K + K K K K K K KK +++ K++ K +
Sbjct: 86 KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEP 126
Score = 29.3 bits (66), Expect = 1.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E K+ K + K K K K K K KK +++ K++ K
Sbjct: 83 EPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVK 122
Score = 29.3 bits (66), Expect = 1.3
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
K+ + + K K K K K K KK +++ K++ K + +
Sbjct: 86 KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 28.9 bits (65), Expect = 2.0
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K + K K K K K K +K +++ K++ K + +
Sbjct: 92 IPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 28.1 bits (63), Expect = 3.5
Identities = 10/42 (23%), Positives = 18/42 (42%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEK 193
PV + K K K + K KK +++ K+ K + +
Sbjct: 86 KEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
Score = 27.7 bits (62), Expect = 4.6
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E K+ K + K K K K + KK +++ K++ K + +
Sbjct: 83 EPPKEAPVVIPKPEPKPKPKPKPKPKPVKKVEEQPKREVKPVEPR 127
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 33.6 bits (77), Expect = 0.082
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 9/62 (14%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEK---------KKKKKKKKKKKKKKKKKKIMRKE 216
EKK++E KKK K + + K KK KKKKKKKKK++K + ++
Sbjct: 236 AEKKRQEVKKKLKINNVSLDDDSTETPASDYYDVSEMVKFKKPKKKKKKKKKRRKDLDED 295
Query: 217 EN 218
E
Sbjct: 296 EL 297
Score = 29.0 bits (65), Expect = 2.3
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 17/85 (20%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK-------------- 196
+ N +R+ + E K+K E+ ++K K ++K ++ K K
Sbjct: 34 RDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTLGEDDDDDDDTKA 93
Query: 197 ---KKKKKKKKKKKKKKKIMRKEEN 218
K KK++KKK+ ++KK + +E
Sbjct: 94 WLKKSKKRQKKKEAERKKALLLDEK 118
Score = 28.6 bits (64), Expect = 2.8
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E K KK KKKKKK KK++K+ + + + + + + E
Sbjct: 270 SEMVKFKKPKKKKKKKKKRRKDLDEDELEPEAEGLGSSDSGSRKDVEE 317
Score = 28.2 bits (63), Expect = 3.7
Identities = 10/49 (20%), Positives = 28/49 (57%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
++ E KK++++ + K+ +++ +EK K ++K+++ K K +
Sbjct: 33 SRDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERNSKLGGIKTL 81
Score = 27.4 bits (61), Expect = 7.4
Identities = 9/49 (18%), Positives = 29/49 (59%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K+ ++ + KK++++ + K+K ++ ++K K ++K+++ K+
Sbjct: 27 PGSTKESRDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERNSKL 75
>gnl|CDD|217834 pfam03998, Utp11, Utp11 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 239
Score = 32.7 bits (75), Expect = 0.084
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
R+ R+K+ KK E++ + +++ KK KKKK K K K K KK++K+
Sbjct: 190 RKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
Score = 30.8 bits (70), Expect = 0.36
Identities = 18/51 (35%), Positives = 32/51 (62%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R+ +++K KK E++ + +++ KK K KKK+ K K K K KK++K+
Sbjct: 189 ERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
Score = 29.6 bits (67), Expect = 0.99
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ R KK KK ++ + +++ KK K KKKK K K K K KK++K+
Sbjct: 188 KERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWKKERKR 239
Score = 29.3 bits (66), Expect = 1.2
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKK---------KKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ +KK K KE K++K+++KK ++ KK + KKKK K K K K K
Sbjct: 175 KSAKKKRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKIVKDKDGKVVYKWK 234
Query: 212 IMRK 215
RK
Sbjct: 235 KERK 238
Score = 26.9 bits (60), Expect = 8.1
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+KK KKK + K+ K++K+++ K KK E++ + +++ KK K KKKKI
Sbjct: 173 KKKSAKKKRKLYKELKERKEREKKLKKVEQRLELQRELMKKGKGKKKKI 221
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 33.4 bits (76), Expect = 0.085
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 146 EGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
E +I S N R K + K + ++ + ++++++K E++ KK KK K
Sbjct: 283 EEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLK 342
Query: 206 KKKKKK 211
K K KK
Sbjct: 343 KLKGKK 348
Score = 28.0 bits (62), Expect = 4.7
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKK 198
+E+K KKKKKK KNKKK + KK K+
Sbjct: 237 DEEKSKKKKKKLAKNKKKLDDDKKGKR 263
Score = 27.6 bits (61), Expect = 6.0
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
+E+K +EE KK KK KK K KK K
Sbjct: 323 SEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKD 354
>gnl|CDD|241262 cd01228, PH_BCR-related, Breakpoint Cluster Region-related
pleckstrin homology (PH) domain. The BCR gene is one of
the two genes in the BCR-ABL complex, which is
associated with the Philadelphia chromosome, a product
of a reciprocal translocation between chromosomes 22 and
9. BCR is a GTPase-activating protein (GAP) for RAC1
(primarily) and CDC42. The Dbl region of BCR has the
most RhoGEF activity for Cdc42, and less activity
towards Rac and Rho. Since BCR possesses both GAP and
GEF activities, it may function to temporally regulate
the activity of these GTPases. It also displays
serine/threonine kinase activity. The BCR protein
contains multiple domains including an N-terminal kinase
domain, a RhoGEF domain, a PH domain, a C1 domain, a C2
domain, and a C-terminal RhoGAP domain. ABR, a related
smaller protein, is structurally similar to BCR, but
lacks the N-terminal kinase domain and has GAP activity
for both Rac and Cdc42. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 179
Score = 32.7 bits (75), Expect = 0.085
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
++ + KK K+K K+ E+KK + +K +KK
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKK 129
Score = 28.1 bits (63), Expect = 2.8
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK-----KKKKKIMRKE 216
++ + KK + K+K K+ ++KK K +KK+ +E
Sbjct: 89 EELVQMKKAISALKQKIKRDSAERKKAASSGSRAIEKLRKKLAEQE 134
>gnl|CDD|218941 pfam06217, GAGA_bind, GAGA binding protein-like family. This
family includes gbp a protein from Soybean that binds to
GAGA element dinucleotide repeat DNA. It seems likely
that the this domain mediates DNA binding. This putative
domain contains several conserved cysteines and a
histidine suggesting this may be a zinc-binding DNA
interaction domain.
Length = 301
Score = 32.9 bits (75), Expect = 0.090
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K+ KK KK ++ K K K KK KKK + K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKM 180
Score = 32.9 bits (75), Expect = 0.099
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
P + ++ + K K K KK KKK N+ K + K K
Sbjct: 141 PPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 32.9 bits (75), Expect = 0.10
Identities = 15/71 (21%), Positives = 24/71 (33%)
Query: 138 NPVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
NP + M + + P + +K +K + + K K KK KK K
Sbjct: 122 NPYGTREMHHLEVPPISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMP 181
Query: 198 KKKKKKKKKKK 208
+ K K
Sbjct: 182 GIDPRSKPDWK 192
Score = 32.5 bits (74), Expect = 0.13
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
E K+ KK KK + K K K KK KKK + K
Sbjct: 143 EAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKM 180
Score = 32.5 bits (74), Expect = 0.13
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
++ KK KK + K K K KK KKK + K R
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPR 186
Score = 31.0 bits (70), Expect = 0.35
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+E KK KK + K K K +K KKK + K K +
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
Score = 30.6 bits (69), Expect = 0.51
Identities = 13/49 (26%), Positives = 19/49 (38%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K+ K+ KK + K K KK K+K + K + K K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDWK 192
Score = 30.2 bits (68), Expect = 0.75
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
++ KK +K + K K K KK KK+ + K + K
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSK 188
Score = 30.2 bits (68), Expect = 0.78
Identities = 15/59 (25%), Positives = 21/59 (35%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
H + S KE KK ++ + K K K K KKK + K + K
Sbjct: 130 HHLEVPPISTAPPEAKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSK 188
Score = 29.9 bits (67), Expect = 0.94
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K+ KK K+ + K K K K KKK + K + K
Sbjct: 145 KEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPDW 191
Score = 29.5 bits (66), Expect = 1.3
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+ KK KK + K K K KK KKK + +
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVK 179
Score = 29.1 bits (65), Expect = 1.7
Identities = 13/47 (27%), Positives = 18/47 (38%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
KE KK KK + K K K+ KKK + K + +
Sbjct: 144 AKEVKKPKKGQSPKVPKAPKPKKPKKKGSVSNRSVKMPGIDPRSKPD 190
>gnl|CDD|227891 COG5604, COG5604, Uncharacterized conserved protein [Function
unknown].
Length = 523
Score = 33.3 bits (76), Expect = 0.092
Identities = 10/61 (16%), Positives = 25/61 (40%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ + ++ K K +++K+ + KK K + + K + K K+K+ +
Sbjct: 4 ASKATKKFTKNHLKNTIDRRKQLARSKKVYGTKNRNSHTENKMESGTNDNNKNKEKLSKL 63
Query: 216 E 216
Sbjct: 64 Y 64
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 32.7 bits (75), Expect = 0.092
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
++KE+ EE+K+ KK +K E KKKK
Sbjct: 163 KQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 30.0 bits (68), Expect = 0.59
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+K+ K+KEE +++K+ KK +K + KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 30.0 bits (68), Expect = 0.64
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
++K+E +E K+ KK +K + KKKK
Sbjct: 163 KQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 29.7 bits (67), Expect = 0.82
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+K+ K+K++ +++K KK +K + KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 29.3 bits (66), Expect = 1.0
Identities = 9/31 (29%), Positives = 13/31 (41%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKK 191
+E+K+ KK +K KKKK
Sbjct: 166 EEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.9 bits (65), Expect = 1.7
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
++ K++E+ +++K+ KK +K + KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.5 bits (64), Expect = 1.9
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E+K K+K++ ++K+ KK +K + KKKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.5 bits (64), Expect = 2.0
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
E K K+K++ + +K+ KK +K + KKKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.5 bits (64), Expect = 2.4
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
K K++++ +++K+ KK +K + KKKK
Sbjct: 160 KDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 28.1 bits (63), Expect = 2.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
RK K+K+E +++K+ KK +K + KKKK
Sbjct: 159 RKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
Score = 26.6 bits (59), Expect = 8.2
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
E+K ++K++ +++K+ K+ +K + KKKK
Sbjct: 158 ERKDAKQKEEFAAEERKEALAAAAKKSATPQKVETKKKK 196
>gnl|CDD|219913 pfam08576, DUF1764, Eukaryotic protein of unknown function
(DUF1764). This is a family of eukaryotic proteins of
unknown function. This family contains many hypothetical
proteins.
Length = 98
Score = 31.3 bits (71), Expect = 0.092
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K K+ + KK+KKK K+ K + K KK +KK KKK + EE+
Sbjct: 8 KTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEES 60
Score = 30.9 bits (70), Expect = 0.13
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
KK+++KKK+ K + K KK ++K KKK + + ++ K+++
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRT 65
Score = 30.5 bits (69), Expect = 0.19
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 168 KKKKEEKKKKKK-----KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++KK EK K+ KK+ KKKK+ K + K KK +KK KKK E
Sbjct: 2 EEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPE 55
Score = 29.7 bits (67), Expect = 0.41
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
KK+KKKKK+ K + K KK +KK KKK + + ++ R+
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 29.0 bits (65), Expect = 0.77
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
S+ ++RKK+KK+ + + K KK +K KKK E + ++ K+++
Sbjct: 19 SNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 28.2 bits (63), Expect = 1.1
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+K++KKKK K + K KK KK KK+ + + ++ K+++
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 27.0 bits (60), Expect = 2.9
Identities = 15/44 (34%), Positives = 26/44 (59%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
KK KKKK+ K + K KK +KK K+K + + ++ K+++
Sbjct: 21 IKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRR 64
Score = 27.0 bits (60), Expect = 3.5
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+KKKKK+ K + K +K +KK KKK + + ++ R+ E+
Sbjct: 23 KRKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRTED 67
Score = 26.3 bits (58), Expect = 5.2
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+EKK ++ K+ K+KKK+K+ K + K KK +KK + E
Sbjct: 1 KEEKKNEKTDKRDIDDIFSNIKKRKKKKKRTAKTARPKATKKGQKKDKKKDEFP 54
Score = 26.3 bits (58), Expect = 5.8
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K+KKK+ K + K KK + K KKK++ + ++ K+++ + I +EE
Sbjct: 24 RKKKKKRTAKTARPKATKKGQKKDKKKDEFPEFPEESKRRRTEDGLPIYTEEE 76
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 33.1 bits (75), Expect = 0.092
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
KE KK ++ ++K E++K +KK +K++K KK
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMD 147
Score = 32.7 bits (74), Expect = 0.13
Identities = 11/43 (25%), Positives = 25/43 (58%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K+ +K ++ ++K +E+K +KK +K++K KK + +
Sbjct: 108 KESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMDEDV 150
Score = 26.9 bits (59), Expect = 10.0
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
S + R+ +K +++K +KK +K++K KK
Sbjct: 109 ESKKTPRRTRRKAAAASSDVEEEKTEKKVRKRRKVKKMD 147
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 31.5 bits (72), Expect = 0.12
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 6/63 (9%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKK------KKEKKKKKKKKKKKKKKKKK 209
V R+ + ++ E K K+K+KKKKKK + + +EKKK++ + +KK ++ K
Sbjct: 56 VTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELEDFYRFQIREKKKEELAELRKKFEEDK 115
Query: 210 KKI 212
K+I
Sbjct: 116 KRI 118
Score = 29.5 bits (67), Expect = 0.48
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 14/58 (24%)
Query: 165 KKEKKKKEEKKK--------------KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K+E+++KEE K+ + +K K ++ + K K+K+KKKKKKK+ +
Sbjct: 32 KREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKELE 89
>gnl|CDD|132492 TIGR03451, mycoS_dep_FDH, S-(hydroxymethyl)mycothiol dehydrogenase.
Members of this protein family are mycothiol-dependent
formaldehyde dehydrogenase (EC 1.2.1.66). This protein
is found, so far, only in the Actinobacteria
(Mycobacterium sp., Streptomyces sp., Corynebacterium
sp., and related species), where mycothione replaces
glutathione [Cellular processes, Detoxification].
Length = 358
Score = 32.9 bits (75), Expect = 0.12
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 47 VTGTEVKEDVNSHWIIKAPTGK--TCKRGEPIKCNDIIRLTHTTTNK-NLHSHHFSSPLS 103
VT + V +W +A G+ CKRG P C D TH T K L + LS
Sbjct: 73 VTDVAPGDYVVLNW--RAVCGQCRACKRGRPWYCFD----THNATQKMTLTD---GTELS 123
Query: 104 GAQEVSAYLSAT 115
A + A+ T
Sbjct: 124 PALGIGAFAEKT 135
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 32.0 bits (73), Expect = 0.12
Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 17/70 (24%)
Query: 160 HRRRRKKEKKKKEE-----------------KKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
H R++E K++ E + +K+ ++ +K K + K++K
Sbjct: 63 HALLRERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKS 122
Query: 203 KKKKKKKKKI 212
K + +
Sbjct: 123 AKDPRGGTQD 132
Score = 31.3 bits (71), Expect = 0.25
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
S R++ E++ +K+K + K++K K + + K
Sbjct: 88 DAGAVAGESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVDK 136
Score = 29.3 bits (66), Expect = 0.95
Identities = 8/43 (18%), Positives = 19/43 (44%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+ +KE +++ +K+K K++K K + + K
Sbjct: 94 GESSADRKEAEQQGAAQKRKSCRDKERKSAKDPRGGTQDVVDK 136
>gnl|CDD|218437 pfam05107, DUF694, Family of unknown function (DUF694). Family of
hypothetical bacterial proteins.
Length = 278
Score = 32.6 bits (75), Expect = 0.13
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 146 EGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEK 193
E IF+ + + + H ++ + +E K+KKKKKKKKK K++ +E
Sbjct: 58 EEIFVQEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 30.7 bits (70), Expect = 0.45
Identities = 15/47 (31%), Positives = 32/47 (68%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
++KE+ + + ++ ++ ++ K+KKKKKKKKKKK++ ++ + K
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREWMCEK 109
Score = 30.7 bits (70), Expect = 0.52
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
++KEK E + ++ + ++ K+KK+KKKKKKKK++ ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 29.9 bits (68), Expect = 0.99
Identities = 14/43 (32%), Positives = 29/43 (67%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+EK+K ++ + ++ + + K++KKKKKKKKKK++ ++
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
Score = 28.7 bits (65), Expect = 2.3
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++K+K + + ++ ++ K+KKKKKKKKKKK+ +R+
Sbjct: 63 QEKEKLNDEHGELYERADRAEELLKEKKKKKKKKKKKEELREW 105
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 32.6 bits (75), Expect = 0.14
Identities = 14/59 (23%), Positives = 38/59 (64%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
H+ R + E++ KE + + ++ +++ +++ ++K + KK++ +KK+K++ KE+N
Sbjct: 61 HKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKN 119
Score = 30.7 bits (70), Expect = 0.68
Identities = 11/53 (20%), Positives = 34/53 (64%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+E KK+ E KK+ + K+ K + + +++ K+++ + ++ +++++++EE
Sbjct: 39 EEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREET 91
Score = 28.0 bits (63), Expect = 4.9
Identities = 13/62 (20%), Positives = 33/62 (53%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+A ++ K+ E+ KK+ + KK+ + KE+ K + + +++ K+++ ++ R
Sbjct: 22 IAEKKLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRL 81
Query: 216 EE 217
E
Sbjct: 82 ER 83
>gnl|CDD|185611 PTZ00428, PTZ00428, 60S ribosomal protein L4; Provisional.
Length = 381
Score = 32.3 bits (74), Expect = 0.15
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
N ++ +K +EK K +K K + +KK KK + K K K K
Sbjct: 329 NPAAKKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 31.6 bits (72), Expect = 0.28
Identities = 13/47 (27%), Positives = 22/47 (46%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K+ +K ++K K + K ++ +KK KK + K K K I
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSI 379
Score = 31.2 bits (71), Expect = 0.37
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+P A R+ ++K K +K K ++ + K KK K K K K
Sbjct: 329 NPAAKKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 29.3 bits (66), Expect = 1.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
KK +K ++K K +K K ++ +KK KK + K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAK 370
Score = 29.3 bits (66), Expect = 1.5
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++ ++ ++K K +K KN++ +K+ KK + K K K K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAKALYKSIKA 381
Score = 27.3 bits (61), Expect = 6.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
KK +K + K K +K K ++ +KK KK + + K
Sbjct: 333 KKLRKLAVLAQEKATAKGAQKVKNRRARKKAKKARLAKVAK 373
Score = 27.3 bits (61), Expect = 7.5
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 11/70 (15%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKN-----------KKKKKEKKKKKKKKKKKKKK 206
NS + KK+ K++ +KK KN KK +K ++K K +
Sbjct: 293 NSEEVQAVLRPAKKKPAKRRVQKKNPLKNRRVRLRLNPAAKKLRKLAVLAQEKATAKGAQ 352
Query: 207 KKKKKIMRKE 216
K K + RK+
Sbjct: 353 KVKNRRARKK 362
>gnl|CDD|238356 cd00660, Topoisomer_IB_N, Topoisomer_IB_N: N-terminal DNA binding
fragment found in eukaryotic DNA topoisomerase (topo) IB
proteins similar to the monomeric yeast and human topo I
and heterodimeric topo I from Leishmania donvanni. Topo
I enzymes are divided into: topo type IA (bacterial)
and type IB (eukaryotic). Topo I relaxes superhelical
tension in duplex DNA by creating a single-strand nick,
the broken strand can then rotate around the unbroken
strand to remove DNA supercoils and, the nick is
religated, liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit re-ligation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. In addition to differences in
structure and some biochemical properties,
Trypanosomatid parasite topo I differ from human topo I
in their sensitivity to CPTs and other classical topo I
inhibitors. Trypanosomatid topos I play putative roles
in organizing the kinetoplast DNA network unique to
these parasites. This family may represent more than
one structural domain.
Length = 215
Score = 31.9 bits (73), Expect = 0.15
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKK-----KKKNKKKKKEKKKKKKKKKKKKK 205
+ + V + + ++ KEEK KK K + +++KEKKK K++KK
Sbjct: 53 YATKEVFRKNFFKDFRKILTKEEKHIIKKLSKCDFTPIYQYFEEEKEKKKAMSKEEKKAI 112
Query: 206 KKKKKKIMRK 215
K++K+K+
Sbjct: 113 KEEKEKLEEP 122
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 32.6 bits (74), Expect = 0.16
Identities = 11/53 (20%), Positives = 29/53 (54%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K++KK++ +K ++ + + ++ K ++ K K++ KK + ++ K E
Sbjct: 169 KRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLE 221
Score = 31.9 bits (72), Expect = 0.26
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
S + ++ K EEK K+ +K+ KK K+ KKEK++ ++ +K+ K+ + K++ +EE
Sbjct: 300 KSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEE 359
Score = 31.9 bits (72), Expect = 0.31
Identities = 16/59 (27%), Positives = 32/59 (54%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+R++K+ KK E+ + + + K +E K K++ KK + + K+K+ +EEN
Sbjct: 168 EKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Score = 31.5 bits (71), Expect = 0.33
Identities = 15/57 (26%), Positives = 38/57 (66%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
RRK + ++K ++ +K+ KK +K+ KK+K+E ++ +K+ K+ + K++ ++ ++
Sbjct: 305 KLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQ 361
Score = 31.1 bits (70), Expect = 0.56
Identities = 15/53 (28%), Positives = 34/53 (64%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++E+ K K++++ K + K +++K + ++K K+ +K+ KK +K+ KEE
Sbjct: 285 QEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEE 337
Score = 29.9 bits (67), Expect = 1.1
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
A S +R+KKE+ KK ++ + + ++ K ++ K K++ KK + + K+ +
Sbjct: 163 AAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLEL 222
Query: 216 EE 217
EE
Sbjct: 223 EE 224
Score = 29.6 bits (66), Expect = 1.4
Identities = 13/59 (22%), Positives = 39/59 (66%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + S + +K EK+ K+EK++ ++ +K+ K + K+E +++++++ +K ++K ++
Sbjct: 314 EEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQL 372
Score = 29.6 bits (66), Expect = 1.4
Identities = 15/55 (27%), Positives = 33/55 (60%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + K + K ++K K+ + + KK EK+ KK+K++ ++ +K+ K++ K E
Sbjct: 300 KSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREA 354
Score = 29.2 bits (65), Expect = 1.8
Identities = 12/57 (21%), Positives = 34/57 (59%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K +K K E++K++K K +++ + +E+ K++ + ++++ +++ KEE
Sbjct: 778 AEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEE 834
Score = 28.8 bits (64), Expect = 2.4
Identities = 8/57 (14%), Positives = 29/57 (50%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+++ + ++K+++ NK + K+++ +++KK+ ++ ++ KE
Sbjct: 968 LAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEFL 1024
Score = 28.8 bits (64), Expect = 2.8
Identities = 13/56 (23%), Positives = 38/56 (67%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R KKE++++E+ + K+K+ + ++K ++ K +++K++K K ++++ + + +E
Sbjct: 757 RLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELK 812
Score = 28.8 bits (64), Expect = 2.8
Identities = 9/59 (15%), Positives = 29/59 (49%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ ++ K K++ KK + + K+K + +++ K +++ ++++R E+
Sbjct: 194 EELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQE 252
Score = 28.4 bits (63), Expect = 3.3
Identities = 8/57 (14%), Positives = 24/57 (42%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ +E K ++ K K++ K + + K+K + +++ K+ + +
Sbjct: 185 NLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERID 241
Score = 28.4 bits (63), Expect = 3.4
Identities = 12/57 (21%), Positives = 29/57 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++++ K +E ++ + K+ K +K++ EK+ K K K + KK + + +
Sbjct: 424 EEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKLLKDKLELKKSEDLLKETKL 480
Score = 27.2 bits (60), Expect = 7.8
Identities = 11/46 (23%), Positives = 31/46 (67%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KEK+ EE++K +K K +++ ++K K ++++ + +++ K++ +
Sbjct: 773 KEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELL 818
Score = 27.2 bits (60), Expect = 8.1
Identities = 18/59 (30%), Positives = 35/59 (59%), Gaps = 4/59 (6%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
RR+ E+K KE +K+ KK +K+ K +K++ E+ +K+ K+ + K++ +EE
Sbjct: 307 ERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKE----LEIKREAEEEEEEQ 361
>gnl|CDD|219947 pfam08639, SLD3, DNA replication regulator SLD3. The SLD3 DNA
replication regulator is required for loading and
maintenance of Cdc45 on chromatin during DNA
replication.
Length = 437
Score = 32.5 bits (74), Expect = 0.17
Identities = 15/43 (34%), Positives = 26/43 (60%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
++ K EK+ KKK K+ +N + K +K++K+KK KK+
Sbjct: 121 DRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDLPVL 163
Score = 27.9 bits (62), Expect = 5.4
Identities = 13/41 (31%), Positives = 27/41 (65%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
++ K +K+ KKK K+ + + K++K++K+KK KK+ +
Sbjct: 120 LDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQDL 160
Score = 27.5 bits (61), Expect = 6.5
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E + K +K+ KK K+ + + K++K++K+KK KK+
Sbjct: 119 ELDRFTKFEKEYKKKLLKRSQNLDRSKRRKRRKRKKNKKQ 158
>gnl|CDD|177283 PHA00451, PHA00451, protein kinase.
Length = 362
Score = 32.1 bits (73), Expect = 0.17
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 19/85 (22%)
Query: 153 SDPVANSHRRRRKK-------------EKKKKEEKKKKKKKKKKKKNKK------KKKEK 193
+DPV+ SH R R+ E + ++ K +K K++ +K
Sbjct: 211 TDPVSFSHDREREPGFPLDPDELIAEVEAIANQRMIERCKNRKAKRDPNGTFQVARKAAM 270
Query: 194 KKKKKKKKKKKKKKKKKKIMRKEEN 218
K++K+ +K + + K+ MR E N
Sbjct: 271 KRRKRNRKLRARNAKELAAMRMEAN 295
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 32.5 bits (74), Expect = 0.18
Identities = 15/63 (23%), Positives = 40/63 (63%), Gaps = 1/63 (1%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK-KKKKKKKKKKKKKIMRK 215
+ + +++EK KKE +++ ++ K++++NKK + EK+ ++ K KK+ + +++ K
Sbjct: 532 EHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKEK 591
Query: 216 EEN 218
+ +
Sbjct: 592 KIH 594
Score = 31.3 bits (71), Expect = 0.36
Identities = 14/60 (23%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKK--NKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
S + ++K + EK K+++K KK+ + ++ +++++ KK + +K+ ++ K ++KE
Sbjct: 521 SALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKE 580
Score = 27.5 bits (61), Expect = 7.6
Identities = 11/47 (23%), Positives = 30/47 (63%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K +KE ++K + +K K ++K K++ +++ ++ K++++ KK +
Sbjct: 519 KLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLE 565
>gnl|CDD|226814 COG4379, COG4379, Mu-like prophage tail protein gpP [General
function prediction only].
Length = 386
Score = 32.1 bits (73), Expect = 0.19
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 147 GIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKK 185
G F + P R+RK ++K K KK KK + +
Sbjct: 343 GAFDVDAYPKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
Score = 27.9 bits (62), Expect = 4.3
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
KK + K+K K K KK KK + +
Sbjct: 351 PKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
Score = 27.9 bits (62), Expect = 4.4
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
KK E +K+K +K +K KK KK + +
Sbjct: 348 DAYPKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
Score = 27.5 bits (61), Expect = 5.4
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
KK + +K K +K K KK KK + +
Sbjct: 347 VDAYPKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
Score = 26.7 bits (59), Expect = 9.4
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
KK + +K+K ++K K KK KK + +
Sbjct: 351 PKKAEAARKRKGDRKGVSHKAKKGGKKNQAE 381
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 31.7 bits (72), Expect = 0.19
Identities = 17/72 (23%), Positives = 43/72 (59%), Gaps = 15/72 (20%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKK---------------KKKKKKNKKKKKEKKKKKKKK 200
+A+ ++RK+E+K + K++K++ + + + ++KEK++KKK K
Sbjct: 137 IADWRAQKRKREQKARAAKERKERLVAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKVK 196
Query: 201 KKKKKKKKKKKI 212
+ K+++K++K++
Sbjct: 197 EAKRREKEEKRM 208
Score = 28.2 bits (63), Expect = 2.4
Identities = 16/84 (19%), Positives = 38/84 (45%)
Query: 134 WPDHNPVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEK 193
+P + E +PS R ++KEK+ + + ++ + K K + +
Sbjct: 81 FPSAEKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADW 140
Query: 194 KKKKKKKKKKKKKKKKKKIMRKEE 217
+ +K+K+++K + K++K E
Sbjct: 141 RAQKRKREQKARAAKERKERLVAE 164
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 32.4 bits (74), Expect = 0.19
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 4/55 (7%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ N H K E + K ++K +++ E+ K+ K+ + K K
Sbjct: 892 YSELQNHH----KTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHKG 942
Score = 29.7 bits (67), Expect = 1.3
Identities = 8/46 (17%), Positives = 20/46 (43%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K E + K ++K +++ ++ K+ K+ + K K
Sbjct: 896 QNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKHK 941
Score = 29.7 bits (67), Expect = 1.5
Identities = 8/62 (12%), Positives = 21/62 (33%)
Query: 150 IHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
I + + K + + K ++K ++ ++ K+ K+ + K
Sbjct: 881 IRGEENTVKGQYSELQNHHKTEALSQNNKYNEEKSAQERMPGADSPEELMKRAKEYQDKH 940
Query: 210 KK 211
K
Sbjct: 941 KG 942
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 32.4 bits (74), Expect = 0.19
Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 14/80 (17%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK------ 205
S + + +R KK KK K K ++ + K E K +K + KK
Sbjct: 357 KSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIR 416
Query: 206 --------KKKKKKIMRKEE 217
K KKK +K+E
Sbjct: 417 EELIEEGLLKSKKKKRKKKE 436
Score = 31.6 bits (72), Expect = 0.33
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
E K +K + KK ++ ++ +E K KKKK+KKK+ +K
Sbjct: 391 EAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 31.2 bits (71), Expect = 0.43
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K+ E K +K + KK ++ +E+ ++ K KKKK+KKK+ K
Sbjct: 390 KEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEK 440
Score = 29.7 bits (67), Expect = 1.1
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKK-------KKEKKKKKKKKKKKKKKKKKKKIMR 214
R+ E K+ + K +K KK + ++ K KKKK+KKK+ + R
Sbjct: 384 RQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFEKFR 442
Score = 27.7 bits (62), Expect = 5.6
Identities = 12/46 (26%), Positives = 29/46 (63%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
R + K+ + E+K +K+ KK + K +K++ E ++ +K ++ ++K
Sbjct: 277 RDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
Score = 27.4 bits (61), Expect = 6.5
Identities = 12/50 (24%), Positives = 32/50 (64%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
EK ++++ K+ + +KK K+ KK + K +K++ + ++ +K + +R++
Sbjct: 273 EKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQK 322
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 30.3 bits (69), Expect = 0.19
Identities = 9/29 (31%), Positives = 22/29 (75%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K++K+E+K +++++ K+ K K+++I K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEK 29
Score = 30.3 bits (69), Expect = 0.21
Identities = 12/35 (34%), Positives = 28/35 (80%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+++K+EEK +++++ K+ KN K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 29.9 bits (68), Expect = 0.31
Identities = 12/35 (34%), Positives = 27/35 (77%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
KE+K++E+ +++++ K+ K K+++ E+K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 29.2 bits (66), Expect = 0.53
Identities = 10/33 (30%), Positives = 25/33 (75%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K++K++ K +++E+ K+ K K+++ ++K +KI
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKI 33
Score = 28.8 bits (65), Expect = 0.74
Identities = 11/35 (31%), Positives = 26/35 (74%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK 195
+ R+++EK ++EE+ K+ K K+++ ++K ++ KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 28.8 bits (65), Expect = 0.78
Identities = 12/35 (34%), Positives = 26/35 (74%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
K++KEE+K +++++ K+ K++E ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 26.8 bits (60), Expect = 4.0
Identities = 9/36 (25%), Positives = 27/36 (75%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K++K+++K ++++ ++ K K+++ ++K +K KK+
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKKV 36
Score = 26.5 bits (59), Expect = 4.4
Identities = 9/36 (25%), Positives = 26/36 (72%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
K++K+ +K ++E++ K+ K K+++ ++K + ++K
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKKV 36
Score = 26.5 bits (59), Expect = 4.8
Identities = 10/35 (28%), Positives = 27/35 (77%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+E+K+++K +++++ K+ K K+++ ++K +K KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
Score = 26.1 bits (58), Expect = 6.5
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
+ RK+E+K + E++ K+ K K++ ++K EK KK
Sbjct: 1 KERKEEEKAQREEELKRLKNLKREEIEEKLEKIKK 35
>gnl|CDD|179580 PRK03449, PRK03449, putative inner membrane protein translocase
component YidC; Provisional.
Length = 304
Score = 32.0 bits (73), Expect = 0.19
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
K+EE KK+ K +++ N K K K+ KKK
Sbjct: 272 KEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
Score = 29.3 bits (66), Expect = 1.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
K KEE+ KK+ K +++ K K K+ KKK
Sbjct: 269 KIDKEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
Score = 28.5 bits (64), Expect = 3.0
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
K+E+ KK+ K +++ K K K+ KKK
Sbjct: 272 KEEEAKKQAKAERRAANAPKPGAKPKRSKKKAP 304
>gnl|CDD|206228 pfam14058, PcfK, PcfK-like protein. The PcfK-like protein family
includes the Enterococcus faecalis PcfK protein, which
is functionally uncharacterized. This family of proteins
is found in bacteria and viruses. Proteins in this
family are typically between 137 and 257 amino acids in
length. There are two completely conserved residues (D
and L) that may be functionally important.
Length = 136
Score = 31.2 bits (71), Expect = 0.19
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
E +++K + +K+ K ++E+ +K +K+ KK KK +
Sbjct: 85 NHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 29.7 bits (67), Expect = 0.55
Identities = 9/47 (19%), Positives = 24/47 (51%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ + +++K + +K K ++++ +K +K+ KK KK +
Sbjct: 79 NCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 29.3 bits (66), Expect = 0.73
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
E +++K + +K+ K ++++ +K +K+ KK KK +
Sbjct: 84 VNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAEPVQ 128
Score = 27.7 bits (62), Expect = 2.7
Identities = 8/40 (20%), Positives = 23/40 (57%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+ ++++ + +K+ K ++ + +K +K+ KK KK +
Sbjct: 86 HTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSKKAE 125
Score = 26.6 bits (59), Expect = 7.6
Identities = 8/47 (17%), Positives = 23/47 (48%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K + + +++K + +K+ K ++++ +K +K+ KK
Sbjct: 75 GKPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKS 121
Score = 26.6 bits (59), Expect = 7.8
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K + + +++K +K+ K ++++ +K +K+ KK K
Sbjct: 76 KPINCRVTVNHTVELTEEEKAEARKEALKAYQQEELRKIQKRSKKSK 122
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 30.5 bits (69), Expect = 0.19
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
KKE K + K+ K KK + + +K K KK KK KK
Sbjct: 20 KKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKK 65
Score = 29.7 bits (67), Expect = 0.40
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K KK+++ K K K+ K KKN + + +K K KK KK
Sbjct: 17 KWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKD 62
Score = 27.0 bits (60), Expect = 3.2
Identities = 15/44 (34%), Positives = 19/44 (43%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K K K+ + KK + + EK K KK KK KK K
Sbjct: 25 GKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCK 68
Score = 26.2 bits (58), Expect = 5.3
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEK--------KKKKKKKKKKKKKKKKKKIMRKEE 217
KEK K +KK+ K K K+ K KK + +K K KK KK KK + E
Sbjct: 12 KEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKKDCKKGCKWEG 71
Query: 218 N 218
N
Sbjct: 72 N 72
>gnl|CDD|203848 pfam08079, Ribosomal_L30_N, Ribosomal L30 N-terminal domain. This
presumed domain is found at the N-terminus of Ribosomal
L30 proteins and has been termed RL30NT or NUC018.
Length = 71
Score = 29.9 bits (68), Expect = 0.20
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
KK+K +K + K+ KK+ KK +KKK+K I
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLI 34
Score = 29.5 bits (67), Expect = 0.30
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
KK+K+N+K + ++ KK+ KK +KKK+K R E
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAE 39
Score = 29.1 bits (66), Expect = 0.34
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
KK+K+ +K + K KK+ KK +KKK+K K+ +K
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEK 40
Score = 28.0 bits (63), Expect = 1.0
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
++K +K K+ KK+ KK KKK+K K+ +K K+ + ++ +I
Sbjct: 5 KRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEKYVKEYRAAERDEI 53
Score = 26.8 bits (60), Expect = 2.1
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KK+K+ +K + K+ +K+ KK +KKK+K K+
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKR 37
Score = 26.8 bits (60), Expect = 2.3
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
KK+K+ +K K+ K++ KK +KKK+K K+
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKR 37
Score = 26.8 bits (60), Expect = 2.6
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
KK+K+ +K + K+ KK KK +KKK+K K+
Sbjct: 2 LLKKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKR 37
Score = 25.3 bits (56), Expect = 7.2
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
K++K+ E+ + K+ KK+ K +KK++K K+ +K
Sbjct: 4 KKRKRNEKLRAKRAKKRAAKKAARKKKRKLIFKRAEK 40
>gnl|CDD|219547 pfam07741, BRF1, Brf1-like TBP-binding domain. This region covers
both the Brf homology II and III regions. This region is
involved in binding TATA binding protein.
Length = 95
Score = 30.3 bits (69), Expect = 0.20
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 165 KKEKKKKE----EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++E K KE E K +++++K K+K ++ KKKKK+K KKK+
Sbjct: 11 EEEVKLKERIWDELNKDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKKRD 61
Score = 29.5 bits (67), Expect = 0.35
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
+E+++K+ K+K + N KK+KK+K KKK+ +
Sbjct: 30 EEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 29.5 bits (67), Expect = 0.43
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
K+ +++E+K+ K+K + N KKK+K+K KKK+ +
Sbjct: 26 KDYLEEQEEKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 29.5 bits (67), Expect = 0.45
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKK 194
K+ K+K +E KKKKK+K KKK+ E
Sbjct: 34 EKELKQKADEGNNSGKKKKKRKAKKKRDEAG 64
Score = 27.2 bits (61), Expect = 2.4
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKE 192
+ K++ + KKKKK+K KK + +
Sbjct: 33 EEKELKQKADEGNNSGKKKKKRKAKKKRDEAGP 65
Score = 25.7 bits (57), Expect = 9.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++++KE K+K + KKKKK+K +K +
Sbjct: 31 EQEEKELKQKADEGNNSGKKKKKRKAKKKRDE 62
>gnl|CDD|239570 cd03488, Topoisomer_IB_N_htopoI_like, Topoisomer_IB_N_htopoI_like :
N-terminal DNA binding fragment found in eukaryotic DNA
topoisomerase (topo) IB proteins similar to the
monomeric yeast and human topo I. Topo I enzymes are
divided into: topo type IA (bacterial) and type IB
(eukaryotic). Topo I relaxes superhelical tension in
duplex DNA by creating a single-strand nick, the broken
strand can then rotate around the unbroken strand to
remove DNA supercoils and, the nick is religated,
liberating topo I. These enzymes regulate the
topological changes that accompany DNA replication,
transcription and other nuclear processes. Human topo I
is the target of a diverse set of anticancer drugs
including camptothecins (CPTs). CPTs bind to the topo
I-DNA complex and inhibit religation of the
single-strand nick, resulting in the accumulation of
topo I-DNA adducts. This family may represent more than
one structural domain.
Length = 215
Score = 31.5 bits (72), Expect = 0.21
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKK-----KNKKKKKEKKKKKKKKKKKKK 205
+ + + + + K+ KEEK K K K +KE+KK K++KK
Sbjct: 53 YATKEIFQKNFFKDFKKVMTKEEKVIIKDFSKCDFTQMFAYFKAQKEEKKAMSKEEKKAI 112
Query: 206 KKKKKKIMRK 215
K +K+K+ +
Sbjct: 113 KAEKEKLEEE 122
Score = 26.5 bits (59), Expect = 9.1
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
K +KEEKK K++KK +K+K +++
Sbjct: 95 KAQKEEKKAMSKEEKKAIKAEKEKLEEEYG 124
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 31.6 bits (72), Expect = 0.21
Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 10/54 (18%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKK----------KKKEKKKKKKKKKKKK 204
R RR ++++E +KKK++ +K +K +KKEK K + +K+ ++
Sbjct: 118 RERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQ 171
Score = 27.4 bits (61), Expect = 5.6
Identities = 15/55 (27%), Positives = 31/55 (56%), Gaps = 6/55 (10%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK------KKKKKKKKKKKKIMRKEE 217
+K E++ + +++ + ++KKK+E +K +K + +KK+K K RKE
Sbjct: 115 RKWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEA 169
>gnl|CDD|205286 pfam13105, DUF3959, Protein of unknown function (DUF3959). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 260 amino acids in length.
Length = 242
Score = 31.8 bits (72), Expect = 0.21
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+AN R+ K + K+ K+KKK+KK K + K K K K +K K RK
Sbjct: 146 LANLIHRKEKDDNKENINLFKQKKKRKKLSFKIRLPRLPKLKMKLFKFGRKPSNSKDPRK 205
Query: 216 EE 217
E
Sbjct: 206 YE 207
>gnl|CDD|236698 PRK10475, PRK10475, 23S rRNA pseudouridine synthase F; Provisional.
Length = 290
Score = 31.6 bits (72), Expect = 0.21
Identities = 12/45 (26%), Positives = 18/45 (40%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K K K + K K+ K K +K + K+ +KKK
Sbjct: 244 KPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 31.2 bits (71), Expect = 0.29
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K K + K K K+ +K EK + K+ +KK
Sbjct: 243 AKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKK 287
Score = 31.2 bits (71), Expect = 0.29
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
S + + K K K K+ K +K K + K+ +KKK
Sbjct: 241 SEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 29.7 bits (67), Expect = 1.00
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
E K K K K K K+ K +K +K + K+
Sbjct: 242 EAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKR 279
Score = 29.7 bits (67), Expect = 1.1
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K + K K K+ K +K +K + K+ +KKK
Sbjct: 246 KAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
Score = 29.3 bits (66), Expect = 1.4
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ NS + K K K + K+ K +K +K K+ +KKK
Sbjct: 236 IENSSSEAKPKAKAKPKTAGIKRPVVKMEKTAEKGGRPASNGKRFTSPGRKKK 288
>gnl|CDD|153340 cd07656, F-BAR_srGAP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase
Activating Proteins. F-BAR domains are dimerization
modules that bind and bend membranes and are found in
proteins involved in membrane dynamics and actin
reorganization. Slit-Robo GTPase Activating Proteins
(srGAPs) are Rho GAPs that interact with Robo1, the
transmembrane receptor of Slit proteins. Slit proteins
are secreted proteins that control axon guidance and the
migration of neurons and leukocytes. Vertebrates contain
three isoforms of srGAPs, all of which are expressed
during embryonic and early development in the nervous
system but with different localization and timing.
srGAPs contain an N-terminal F-BAR domain, a Rho GAP
domain, and a C-terminal SH3 domain. F-BAR domains form
banana-shaped dimers with a positively-charged concave
surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 241
Score = 31.5 bits (72), Expect = 0.22
Identities = 10/40 (25%), Positives = 28/40 (70%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
+ + +++++K+E+ +KK ++ + +KK +KE +K++ K
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
Score = 28.8 bits (65), Expect = 1.9
Identities = 10/39 (25%), Positives = 28/39 (71%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E+K K+ +K+++K ++ ++K ++ + KK +K+ +K++
Sbjct: 151 ERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQ 189
Score = 28.8 bits (65), Expect = 2.0
Identities = 12/45 (26%), Positives = 29/45 (64%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E K E K K+ +K+++K+ + +K+ ++ + KK +K+ +K++
Sbjct: 146 ESKSAERKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQA 190
Score = 28.8 bits (65), Expect = 2.0
Identities = 14/44 (31%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
E+K KE +K+++K++++ +KK E+ + KK +K+ +K++ K
Sbjct: 151 ERKLKE---AEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
Score = 27.3 bits (61), Expect = 6.2
Identities = 10/40 (25%), Positives = 29/40 (72%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
++ K+ E++++K+++ +KK ++ + KK +K+ +K++ K
Sbjct: 152 RKLKEAEKQEEKQEQSPEKKLERSRSSKKIEKEVEKRQAK 191
>gnl|CDD|215239 PLN02436, PLN02436, cellulose synthase A.
Length = 1094
Score = 32.1 bits (73), Expect = 0.24
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 10/47 (21%)
Query: 176 KKKKKKKKKKN----------KKKKKEKKKKKKKKKKKKKKKKKKKI 212
KKKK K N +KK+KKKK K+KKKKK ++ K+I
Sbjct: 661 KKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNREASKQI 707
Score = 30.2 bits (68), Expect = 0.87
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKK 196
+KKKKKKK K+K KKK +E K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 29.8 bits (67), Expect = 1.2
Identities = 13/23 (56%), Positives = 20/23 (86%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKE 192
+K++KKKK K+KKKKKN++ K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 29.1 bits (65), Expect = 2.4
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKK 185
RKK+KKKK ++KKKKK ++ K
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASK 705
Score = 28.7 bits (64), Expect = 2.8
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKK 197
+KKKKKKK K+ KKKK + K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.7 bits (64), Expect = 2.8
Identities = 14/23 (60%), Positives = 18/23 (78%)
Query: 194 KKKKKKKKKKKKKKKKKKIMRKE 216
+KKKKKKK K+KKKKK + K+
Sbjct: 684 RKKKKKKKSKEKKKKKNREASKQ 706
Score = 28.3 bits (63), Expect = 3.6
Identities = 13/25 (52%), Positives = 19/25 (76%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKK 185
R+KK+KKK +EKKKKK ++ K+
Sbjct: 682 GSRKKKKKKKSKEKKKKKNREASKQ 706
>gnl|CDD|240577 cd12950, RRP7_Rrp7p, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p) and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p. Rrp7p is encoded by YCL031C
gene from Saccharomyces cerevisiae. It is an essential
yeast protein involved in pre-rRNA processing and
ribosome assembly. Rrp7p contains an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 128
Score = 30.7 bits (70), Expect = 0.25
Identities = 20/57 (35%), Positives = 35/57 (61%), Gaps = 5/57 (8%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKK-----KKKEKKKKKKKKKKKKKKKKKKKI 212
+ K +EEKK+K+KKKKKKK + + +EKKK+++ KK ++ K+++
Sbjct: 65 AAGEEAGKAAEEEKKEKEKKKKKKKELEDFYRFQLREKKKEEQADLLKKFEEDKERV 121
>gnl|CDD|177779 PLN00185, PLN00185, 60S ribosomal protein L4-1; Provisional.
Length = 405
Score = 31.7 bits (72), Expect = 0.26
Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+P A + RR + + K KK+K KK K+ KE+ K K K
Sbjct: 334 NPYAKTARRM---ALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWYKTMISD 388
Score = 30.5 bits (69), Expect = 0.70
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K ++ + + K KK+ KK+++ K++ K K K M + +
Sbjct: 338 KTARRMALLAEAARVKAKKEKLAKKRKQVSKEEAAAIKAAGKAWYKTMISDSD 390
>gnl|CDD|218797 pfam05890, Ebp2, Eukaryotic rRNA processing protein EBP2. This
family consists of several Eukaryotic rRNA processing
protein EBP2 sequences. Ebp2p is required for the
maturation of 25S rRNA and 60S subunit assembly. Ebp2p
may be one of the target proteins of Rrs1p for executing
the signal to regulate ribosome biogenesis. This family
also plays a role in chromosome segregation.
Length = 270
Score = 31.5 bits (72), Expect = 0.27
Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 17/67 (25%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKK-----------------KKNKKKKKEKKKKKKKKKKKK 204
+ R KEKK EK KK KKK+K K KKK K + K K
Sbjct: 156 QERAKEKKDMLEKIKKLKKKRKGGGDEGDLFDFLVDDAAKGGSKKKGRKGGAARGKPNAK 215
Query: 205 KKKKKKK 211
+K K K
Sbjct: 216 RKAKDAK 222
Score = 27.7 bits (62), Expect = 4.7
Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 5/59 (8%)
Query: 165 KKEKKKKEEKKKKKKKKKK--KKNKKKKKEKKKKKKKK---KKKKKKKKKKKIMRKEEN 218
+ KK E+ +K+++ KK K+ + +K +++ K+KK K KK KKK+K + +
Sbjct: 127 EAAAKKASEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKGGGDEGDL 185
Score = 27.7 bits (62), Expect = 4.8
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
S R+++E KK ++ + +K +++ K KK EK KK KKK+K
Sbjct: 134 SEEARKQRELKKFGKQVQVEKLQERAKEKKDMLEKIKKLKKKRKG 178
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 31.7 bits (73), Expect = 0.28
Identities = 9/55 (16%), Positives = 28/55 (50%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
SH ++E+ +KEE K++ +++ K + ++ + +++ K + ++
Sbjct: 31 VKSHSSTVEEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEA 85
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 31.5 bits (72), Expect = 0.28
Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 11/58 (18%)
Query: 162 RRRKKEKKKK----EEKKKKK-------KKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
R+ KK+K+ K +EK +KK KK+ + K K+ ++K+K + ++KK
Sbjct: 260 RKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRGKQKRSLRDKQKVLRAHILRQKKGG 317
Score = 29.6 bits (67), Expect = 1.3
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKN------KKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+K KK KE K K+K +KKN KK+ + K+K+ + K+K + + +
Sbjct: 260 RKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRGKQKRSLRDKQKVLRAHILRQKKG 316
Score = 27.7 bits (62), Expect = 5.1
Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 161 RRRRKKEKKKKEEKKKK-----KKKKKKKKN---KKKKKEKKKKKKKKKKKKKKKKKKKI 212
R R+K +K +K K+ K+K +KKN KK + K+K+ + K+K + I
Sbjct: 251 REDREKFGSRKGKKDKEGKSTTNKEKARKKNFMMTLHKKRVRGKQKRSLRDKQKVLRAHI 310
Query: 213 MRK 215
+R+
Sbjct: 311 LRQ 313
Score = 27.3 bits (61), Expect = 6.5
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 4/48 (8%)
Query: 164 RKKEKKKKEEK----KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
KK+K+ KEE+ K+ ++ ++K ++K KK+K+ K K+K +KK
Sbjct: 233 AKKKKQTKEERIATAKEGREDREKFGSRKGKKDKEGKSTTNKEKARKK 280
>gnl|CDD|178635 PLN03086, PLN03086, PRLI-interacting factor K; Provisional.
Length = 567
Score = 31.8 bits (72), Expect = 0.28
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
RR +EK ++E++++K++ K K + ++K KE+ K++
Sbjct: 6 RRAREKLEREQRERKQRAKLKLERERKAKEEAAKQR 41
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 31.5 bits (71), Expect = 0.29
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ A + + K K E K K + + + + K+K K+ KK K +KK
Sbjct: 249 EREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEKK 302
Score = 29.6 bits (66), Expect = 1.4
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R+ ++E + + K K + KNK + + + KKK K+ KK ++ E+
Sbjct: 245 IRKWEREAGARLKALAALKGKAEAKNKAEIEAEALASATAVKKKAKEVMKKALKMEK 301
>gnl|CDD|224340 COG1422, COG1422, Predicted membrane protein [Function unknown].
Length = 201
Score = 31.2 bits (71), Expect = 0.31
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+K K+ +K K+ +K+ +E ++ KK KK ++K+ ++M +
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQMEMMDDQ 114
Score = 27.3 bits (61), Expect = 5.7
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K K+ +K KE +K+ ++ ++ KK KK+ K+
Sbjct: 72 EKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQM 108
>gnl|CDD|240380 PTZ00362, PTZ00362, hypothetical protein; Provisional.
Length = 479
Score = 31.7 bits (72), Expect = 0.32
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
KKKKKKKKK +K+ + KK ++KK
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKK 43
Score = 30.5 bits (69), Expect = 0.69
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KKKKKKKKK K+ + KK ++KK +E
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEEGT 50
Score = 29.0 bits (65), Expect = 2.2
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
KKKKKKKKK + + KK ++KK
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKK 43
Score = 28.6 bits (64), Expect = 3.0
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
KKKKKKKK K++ + KK ++KK
Sbjct: 10 KKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKK 43
Score = 28.2 bits (63), Expect = 3.7
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
KKKKKKKKK K + KK ++KK
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKK 43
Score = 27.0 bits (60), Expect = 9.6
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
KKKK++KKK K+ KK ++KK+ ++
Sbjct: 9 KKKKKKKKKASKESSNGSQNSKKTIFMYNLSRRKKRHNEE 48
>gnl|CDD|222649 pfam14284, PcfJ, PcfJ-like protein. The PcfJ-like protein family
includes the E. faecalis PcfJ protein, which is
functionally uncharacterized. It is found in bacteria
and viruses, and is typically between 159 and 170 amino
acids in length. There is a conserved HCV sequence
motif.
Length = 169
Score = 30.7 bits (70), Expect = 0.33
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
+H R K + KKE++K +K +K+ + +K +E K K
Sbjct: 30 AHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 28.8 bits (65), Expect = 1.5
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 148 IFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK 195
++ P + A R K + KK++EK +K +K+ + K ++ K K
Sbjct: 20 HYVCPKNLKAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
Score = 27.3 bits (61), Expect = 4.2
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K K + K + KK K+K ++ +K+ + +K ++ K K
Sbjct: 25 KNLKAAHDRAVAKYQAKKEKEKAEKMRKRYPELEKIFRELKSK 67
>gnl|CDD|215494 PLN02915, PLN02915, cellulose synthase A [UDP-forming], catalytic
subunit.
Length = 1044
Score = 31.4 bits (71), Expect = 0.34
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ K KK +K KK ++ KK+KK+ KK +KK + + EE
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEE 659
Score = 28.0 bits (62), Expect = 5.0
Identities = 16/44 (36%), Positives = 21/44 (47%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
RR K +K KK +K ++ KK KKK KK +KK
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKK 650
Score = 27.6 bits (61), Expect = 5.8
Identities = 13/44 (29%), Positives = 21/44 (47%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
RR + K+ KK ++ ++ KK+ KK KK +KK
Sbjct: 607 RRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKK 650
>gnl|CDD|221857 pfam12923, RRP7, Ribosomal RNA-processing protein 7 (RRP7). RRP7
is an essential protein in yeast that is involved in
pre-rRNA processing and ribosome assembly. It is
speculated to be required for correct assembly of rpS27
into the pre-ribosomal particle.
Length = 131
Score = 30.3 bits (69), Expect = 0.34
Identities = 13/34 (38%), Positives = 24/34 (70%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ +K+K ++ K E+++K K+KKKKKKK+ +
Sbjct: 57 RGGRKRKAGASRNKAAEERRKLKEKKKKKKKELE 90
Score = 29.5 bits (67), Expect = 0.72
Identities = 20/52 (38%), Positives = 38/52 (73%), Gaps = 2/52 (3%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKN--KKKKKEKKKKKKKKKKKKKKKKKKKI 212
R K +++++ K+KKKKKKK+ +N + + +EKKK++ + +KK ++ KK+I
Sbjct: 68 RNKAAEERRKLKEKKKKKKKELENFYRFQIREKKKEELAELRKKFEEDKKRI 119
Score = 28.0 bits (63), Expect = 2.0
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 13/59 (22%)
Query: 165 KKEKKKKEEKKK-------------KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K+E++ KEE K + +K+K + K ++++K K+KKKKKKK+ +
Sbjct: 32 KREEEAKEEAKARSEPDEDGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELE 90
Score = 26.0 bits (58), Expect = 9.5
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
+ K + E+ + +K+ + K ++++K K+KKKKKKK++
Sbjct: 38 KEEAKARSEPDEDGWTTVTRGGRKRKAGASRNKAAEERRKLKEKKKKKKKELE 90
>gnl|CDD|223250 COG0172, SerS, Seryl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 429
Score = 31.4 bits (72), Expect = 0.36
Identities = 11/61 (18%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 162 RRRKKEKKKKEEKKKKKKK-----KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
R+K ++ EE + ++ + + K + E+ + K+ K+K K+ + + E
Sbjct: 36 EERRKLLRELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELE 95
Query: 217 E 217
Sbjct: 96 A 96
Score = 29.5 bits (67), Expect = 1.3
Identities = 8/49 (16%), Positives = 23/49 (46%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ + E K+ + K+ + ++ + KE K+K K+ + + + +
Sbjct: 49 QAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAE 97
Score = 28.7 bits (65), Expect = 2.3
Identities = 6/50 (12%), Positives = 24/50 (48%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ ++ + KE + K+ + + + ++ K+K K+ + + + ++
Sbjct: 49 QAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAEL 98
Score = 27.2 bits (61), Expect = 8.7
Identities = 6/52 (11%), Positives = 22/52 (42%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ + + +E + K+ + + + K+ K+K K+ + + + +
Sbjct: 49 QAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDT 100
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 30.3 bits (69), Expect = 0.36
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
E ++K E+++ +KK+ K++N+++K ++ K K K++ E
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPDAYLDE 126
>gnl|CDD|197876 smart00792, Agouti, Agouti protein. The agouti protein regulates
pigmentation in the mouse hair follicle producing a
black hair with a subapical yellow band. A highly
homologous protein agouti signal protein (ASIP) is
present in humans and is expressed at highest levels in
adipose tissue where it may play a role in energy
homeostasis and possibly human pigmentation.
Length = 124
Score = 30.2 bits (68), Expect = 0.38
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKKKK 206
KK KK ++ EKK +KK+KK
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTN 77
Score = 28.7 bits (64), Expect = 1.3
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKN 186
PS + +++ +K ++ E+K +KK+KK N
Sbjct: 43 PSVSIVGLNKKPKKISAEEAEKKLLQKKEKKALTN 77
Score = 28.3 bits (63), Expect = 1.7
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
K KK ++ +KK +KK+KK ++R E
Sbjct: 53 KPKKISAEEAEKKLLQKKEKKALTNVLRPE 82
Score = 27.5 bits (61), Expect = 2.8
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKK 205
KK KK + ++ ++K +KK+KK
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTN 77
Score = 26.8 bits (59), Expect = 5.8
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 186 NKKKKKEKKKKKKKKKKKKKKKKKKK 211
NKK KK ++ +KK +KK+KK
Sbjct: 51 NKKPKKISAEEAEKKLLQKKEKKALT 76
Score = 26.8 bits (59), Expect = 6.1
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKK 202
KK KK + +KK +KK+KK
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTN 77
Score = 26.0 bits (57), Expect = 8.8
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 184 KKNKKKKKEKKKKKKKKKKKKKKKKK 209
KK KK E+ +KK +KK+KK
Sbjct: 52 KKPKKISAEEAEKKLLQKKEKKALTN 77
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 31.3 bits (71), Expect = 0.38
Identities = 12/51 (23%), Positives = 30/51 (58%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
R ++ + ++K ++ +KKK+E K K++K++ + +K+ K++M
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELM 383
Score = 30.9 bits (70), Expect = 0.52
Identities = 10/47 (21%), Positives = 26/47 (55%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
++ +++ ++K+KKK + K KE+K++ + +K+ K+
Sbjct: 335 SSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 29.7 bits (67), Expect = 1.1
Identities = 11/49 (22%), Positives = 28/49 (57%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
R ++ + ++K ++K KKK++ K K++K++ + +K+ K+
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKE 381
Score = 27.0 bits (60), Expect = 9.5
Identities = 8/48 (16%), Positives = 26/48 (54%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ ++ ++K ++K+K+K++ K K++K++ + +K+
Sbjct: 332 TRFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRF 379
>gnl|CDD|180505 PRK06278, PRK06278, cobyrinic acid a,c-diamide synthase; Validated.
Length = 476
Score = 31.2 bits (71), Expect = 0.40
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K K K++EK++ KK K K K K + KK+++ K K
Sbjct: 197 KYLKIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
Score = 29.2 bits (66), Expect = 1.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K KE++K++ KK K +K K KK+++ K K
Sbjct: 200 KIKEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPK 239
Score = 28.8 bits (65), Expect = 2.6
Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKK--KKKKKKKKKKKKKIM 213
K+ +K++ KKNK K++ K + KK+++ K K I+
Sbjct: 202 KEDEKEEIFKKNKILKEKLKSRSGISTNNKKEERNKPKGII 242
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 31.1 bits (70), Expect = 0.41
Identities = 19/47 (40%), Positives = 23/47 (48%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KK KKK ++KK KK +K+ K KK K K KK K K
Sbjct: 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVK 51
Score = 30.7 bits (69), Expect = 0.52
Identities = 18/52 (34%), Positives = 21/52 (40%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
K+ +E K KK K K KK K KK K K KK K + E
Sbjct: 20 AKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTE 71
Score = 29.5 bits (66), Expect = 1.3
Identities = 20/53 (37%), Positives = 22/53 (41%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KK KK K+ K KK K KK K KK K K KK+ K E
Sbjct: 16 KKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFE 68
Score = 29.5 bits (66), Expect = 1.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+K KKK E+KK KK + K +K K K KK K KK
Sbjct: 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKK 52
Score = 28.8 bits (64), Expect = 2.2
Identities = 17/46 (36%), Positives = 20/46 (43%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
E KK +KK ++KK K KE K KK K K KK
Sbjct: 1 MAETKKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKK 46
Score = 28.0 bits (62), Expect = 3.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KK KKK ++KK K ++ K KK K K KK + ++
Sbjct: 5 KKTTKKKTTEEKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKK 52
Score = 28.0 bits (62), Expect = 3.4
Identities = 17/65 (26%), Positives = 26/65 (40%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ + + K KK + KK K K K K EK + KK+ KK KK+ +
Sbjct: 29 TAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAV 88
Query: 213 MRKEE 217
+
Sbjct: 89 SAEVF 93
Score = 27.6 bits (61), Expect = 5.2
Identities = 17/54 (31%), Positives = 23/54 (42%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ KK K KK K K K K +K + KK+ KK KK+ + E
Sbjct: 40 STKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVF 93
Score = 27.6 bits (61), Expect = 5.4
Identities = 16/53 (30%), Positives = 21/53 (39%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K ++ K KK K + K K+ K KK K K KK K E
Sbjct: 19 AAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTE 71
Score = 26.8 bits (59), Expect = 8.2
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
A + + K+ K ++ K K KK K +K E KK+ KK KK+ + +
Sbjct: 35 TAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKESVAKKTVKKEAVSAEVFE 94
Query: 216 EEN 218
N
Sbjct: 95 ASN 97
Score = 26.8 bits (59), Expect = 8.7
Identities = 16/54 (29%), Positives = 22/54 (40%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+ + KK K K K K +K K K KK K +K K+E+
Sbjct: 24 TTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVKKES 77
Score = 26.8 bits (59), Expect = 9.4
Identities = 18/57 (31%), Positives = 22/57 (38%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
P A ++ K KK K K KK KK K K KK K +K + K
Sbjct: 18 PAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKSVKTTTKKVTVKFEKTESVK 74
>gnl|CDD|153289 cd07605, I-BAR_IMD, Inverse (I)-BAR, also known as the IRSp53/MIM
homology Domain (IMD), a dimerization module that binds
and bends membranes. Inverse (I)-BAR (or IMD) is a
member of the Bin/Amphiphysin/Rvs (BAR) domain family.
It is a dimerization and lipid-binding module that bends
membranes and induces membrane protrusions in the
opposite direction compared to classical BAR and F-BAR
domains, which produce membrane invaginations. IMD
domains are found in Insulin Receptor tyrosine kinase
Substrate p53 (IRSp53), Missing in Metastasis (MIM), and
Brain-specific Angiogenesis Inhibitor 1-Associated
Protein 2-like (BAIAP2L) proteins. These are
multi-domain proteins that act as scaffolding proteins
and transducers of a variety of signaling pathways that
link membrane dynamics and the underlying actin
cytoskeleton. Most members contain an N-terminal IMD, an
SH3 domain, and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus, exccept for MIM which does not
carry an SH3 domain. Some members contain additional
domains and motifs. The IMD domain binds and bundles
actin filaments, binds membranes and produces membrane
protrusions, and interacts with the small GTPase Rac.
Length = 223
Score = 30.8 bits (70), Expect = 0.41
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++K + ++K K +K KK K+K+E K + + KK +KK +K K +
Sbjct: 100 EKKLELDQKVINKFEKDYKKEYKQKREDLDKARSELKKLQKKSQKSGTGKYQ 151
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 30.9 bits (70), Expect = 0.42
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
PS P ++ H K ++K E + + +E K++ +KK+K KKK +K+K
Sbjct: 309 PSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKKPRKRK 368
Query: 212 IM 213
+
Sbjct: 369 VN 370
>gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau;
Validated.
Length = 725
Score = 31.3 bits (71), Expect = 0.42
Identities = 14/46 (30%), Positives = 21/46 (45%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+K E K K KK+ K +K KK +K K+ +K+I
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKEI 716
Score = 30.2 bits (68), Expect = 0.94
Identities = 13/41 (31%), Positives = 17/41 (41%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KK + K K KK K +K KK +K + KE
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKEN 711
Score = 30.2 bits (68), Expect = 0.95
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K+ + K K N KK K +K KK +K K+ + ++
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKE 715
Score = 28.2 bits (63), Expect = 3.5
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 145 MEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
+E IF P A S + + + K KK K K KK EK K+ +K+
Sbjct: 656 LEKIFGGPKHIFAISKKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKE 715
Query: 205 ---KKKKKKK 211
K KKK
Sbjct: 716 IFGDKFTKKK 725
Score = 27.5 bits (61), Expect = 7.4
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKK-KKKKKKKKKKKKKKIMRKE 216
+K + K K KK K +K KK +K K+ + KE
Sbjct: 671 KKLINEAKIYWKAINNTKKSVVIKPLEKPKKYEKTSVSKENLEKE 715
>gnl|CDD|233942 TIGR02589, cas_Csd2, CRISPR-associated protein Cas7/Csd2, subtype
I-C/DVULG. This model represents one of two closely
related CRISPR-associated proteins that belong to the
larger family of TIGR01595. Members are the Csd2 protein
of the Dvulg subtype of CRISPR/cas system. CRISPR stands
for Clustered Regularly Interspaced Short Palindromic
Repeats. The related model is TIGR02590, the Csh2
protein of the Hmari CRISPR subtype [Mobile and
extrachromosomal element functions, Other].
Length = 284
Score = 30.9 bits (70), Expect = 0.43
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 138 NPVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKK 188
N VL + IF+ + ++ + K+ K E KK+ KK + K+ ++
Sbjct: 47 NRVLLMGGQDIFVQEKARLNDTIKSLYKRLDIKLETAKKRNKKGRGKEVEE 97
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 31.2 bits (70), Expect = 0.44
Identities = 14/53 (26%), Positives = 38/53 (71%), Gaps = 3/53 (5%)
Query: 155 PVANS---HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
P+A+S +R EK K+E ++K +++++++K K+K++E++++++ ++ K
Sbjct: 571 PLASSKLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 30.0 bits (67), Expect = 0.96
Identities = 11/45 (24%), Positives = 36/45 (80%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K KK++E +K K++ ++K +++++EK+K+K+++++++++ ++
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
Score = 29.7 bits (66), Expect = 1.3
Identities = 11/45 (24%), Positives = 36/45 (80%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K KK+EE +K K++ ++K +++++ +K+K+K+++++++++ ++
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAER 620
Score = 27.7 bits (61), Expect = 5.9
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
S A++ K E KK KK K++ K+ K+++EK ++ ++ KK K
Sbjct: 46 SPSAASTSSNDSKAESTKKPNKKIKEEATSPLKSTKRQREKPASDTEEPERVTAKKSK 103
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 31.0 bits (70), Expect = 0.44
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K E K + K+ KK N KKK K+KK+KK+ + K
Sbjct: 195 KTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVK 241
Score = 29.8 bits (67), Expect = 1.2
Identities = 17/49 (34%), Positives = 23/49 (46%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K+ +K E K K K+N KK KKK K+KK+KK+
Sbjct: 188 SKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEAS 236
Score = 28.6 bits (64), Expect = 2.4
Identities = 16/53 (30%), Positives = 22/53 (41%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K + KE +K + K K K+ KK KKK K+K +KE
Sbjct: 183 KTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEA 235
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 30.9 bits (70), Expect = 0.46
Identities = 12/44 (27%), Positives = 35/44 (79%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KK K++++K++++++K++ K++++E++K+K ++ +K K K+
Sbjct: 190 KKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQ 233
Score = 30.5 bits (69), Expect = 0.55
Identities = 11/46 (23%), Positives = 36/46 (78%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+K K++++K++++++K++K +++++E+K+K ++ +K K K++
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQR 234
Score = 30.5 bits (69), Expect = 0.60
Identities = 11/58 (18%), Positives = 36/58 (62%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ ++ E+K+K+E++K++++ + ++ K+K ++ ++K ++ K++ K E+
Sbjct: 103 KLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAES 160
Score = 30.5 bits (69), Expect = 0.61
Identities = 13/48 (27%), Positives = 37/48 (77%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
++ +++++K++EE++K++KK+++++ +K+K E+ +K K K++ K
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPK 236
Score = 30.5 bits (69), Expect = 0.61
Identities = 17/68 (25%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 152 PSDPVANSHRRRRKKEKKKKE----EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
S + R +E+ KK E KK K++++K++ +++K+ KK+++++++K+K ++
Sbjct: 163 SSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Query: 208 KKKKIMRK 215
+K M+
Sbjct: 223 AWQKWMKN 230
Score = 29.7 bits (67), Expect = 0.90
Identities = 13/48 (27%), Positives = 37/48 (77%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
++ K++++K+EE+++K++KK++++ ++K+K ++ +K K K++ K
Sbjct: 189 LKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEAWQKWMKNVKQRPK 236
Score = 29.3 bits (66), Expect = 1.2
Identities = 13/66 (19%), Positives = 41/66 (62%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
H + ++ K ++ +++ KK+ ++ KK K++++K++++++K++KK+++
Sbjct: 153 HKKEAAESASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQE 212
Query: 211 KIMRKE 216
+ RK+
Sbjct: 213 EEERKQ 218
Score = 28.5 bits (64), Expect = 2.1
Identities = 15/59 (25%), Positives = 40/59 (67%), Gaps = 5/59 (8%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKK-----KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
A+S K ++ +++ KK+ KK K+ ++K++E+++K++KK+++++++K+K
Sbjct: 161 ASSSLSGSAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQK 219
Score = 28.5 bits (64), Expect = 2.5
Identities = 13/53 (24%), Positives = 40/53 (75%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K E+ +E+ KK+ ++ + K K++++K++++++K++KK+++++++ + EE
Sbjct: 170 KPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 27.8 bits (62), Expect = 3.7
Identities = 10/50 (20%), Positives = 34/50 (68%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K+ +++KK +K ++ +K+++EK++++ + +++ K+K ++ R++
Sbjct: 93 LSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKA 142
Score = 26.6 bits (59), Expect = 9.9
Identities = 10/54 (18%), Positives = 37/54 (68%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++ +++KK +K ++K+K++++ ++++ E +++ K+K ++ ++K + K+
Sbjct: 95 AKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQ 148
>gnl|CDD|240253 PTZ00068, PTZ00068, 60S ribosomal protein L13a; Provisional.
Length = 202
Score = 30.4 bits (69), Expect = 0.48
Identities = 13/46 (28%), Positives = 24/46 (52%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K E+K+K++ K K K ++ K+ +KK K K +++K
Sbjct: 153 AKLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 30.4 bits (69), Expect = 0.57
Identities = 16/45 (35%), Positives = 20/45 (44%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K E+K+KE KKK K + K+ KK K K KK
Sbjct: 154 KLEEKRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
Score = 29.2 bits (66), Expect = 1.1
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
++KE+ KKK K +K K+ +KK K K KK
Sbjct: 158 KRKERAAAYYKKKVKLRKAWKEARKKALAKLPKAIVAVLKK 198
>gnl|CDD|115579 pfam06933, SSP160, Special lobe-specific silk protein SSP160. This
family consists of several special lobe-specific silk
protein SSP160 sequences which appear to be specific to
Chironomus (Midge) species.
Length = 758
Score = 31.3 bits (70), Expect = 0.48
Identities = 27/139 (19%), Positives = 57/139 (41%), Gaps = 13/139 (9%)
Query: 85 THTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKT 144
T++TT+ N S SS ++G +++A + Q + + + P L
Sbjct: 305 TNSTTSTNSTSSSNSSTIAGCIDIAANFTIALQNL--------QALLLQEATCAPALAAN 356
Query: 145 MEGIFIHPSDP-----VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
+ + P A+ + +K+ K+K +K + K ++ + K KK+ +
Sbjct: 357 AKKSGVRDFGPCKAAKTASGCAKSGEKKVKRKARLEKMRAKCRRAVGNRMKGSMKKRVRS 416
Query: 200 KKKKKKKKKKKKIMRKEEN 218
+ KK + K + R +N
Sbjct: 417 RAKKFGEAAKSGVRRYRKN 435
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 30.3 bits (69), Expect = 0.48
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ N R R ++ KK+EK+ K+ KK KK + +K KKK + KK K+ K + K
Sbjct: 98 LKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKSKQLDKALEK 157
Score = 28.4 bits (64), Expect = 1.7
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ R++E K+ +K++K+ K+ KK KK + KK KKK + KK K++ + E
Sbjct: 100 NKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKSKQLDKALE 156
Score = 28.4 bits (64), Expect = 2.1
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
KK E KK KKK + KK K+ K +KK+KK K+KK
Sbjct: 129 KKSEIKKLVLKKKFDELKKSKQLDKALEKKRKKNAGKEKK 168
Score = 28.4 bits (64), Expect = 2.1
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
R + + + K K K ++++ K++KK++KE K+ KK KK + KK +++K
Sbjct: 86 RTLQSMKSRLKTLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKK 140
Score = 26.9 bits (60), Expect = 7.1
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
R + K K ++ E K+ KK++K+ K+ KK KK + KK KKK ++ +
Sbjct: 94 RLKTLKNKDREREILKEHKKQEKELIKEGKKPYYLKKSEIKKLVLKKKFDELKKS 148
>gnl|CDD|215364 PLN02678, PLN02678, seryl-tRNA synthetase.
Length = 448
Score = 30.8 bits (70), Expect = 0.50
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
R+ + + +KE K K+ K K K+ E + K+ KK+ +K+ +
Sbjct: 45 RQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAE 93
Score = 29.3 bits (66), Expect = 1.4
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K K KE+ + + K+ K + +KE + ++ K K K
Sbjct: 64 AKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLKT 107
Score = 28.5 bits (64), Expect = 2.8
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
R++ K KE K K K+ + + KE KK+ +K+ + ++ K
Sbjct: 53 RKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100
Score = 27.0 bits (60), Expect = 8.7
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
RK+ K +E K K K+ + ++ KK+ +K+ + ++ K
Sbjct: 53 RKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAA 100
>gnl|CDD|234402 TIGR03928, T7_EssCb_Firm, type VII secretion protein EssC,
C-terminal domain. This model describes the C-terminal
domain, or longer subunit, of the Firmicutes type VII
secretion protein EssC. This protein (homologous to EccC
in Actinobacteria) and the WXG100 target proteins are
the only homologous parts of type VII secretion between
Firmicutes and Actinobacteria [Protein fate, Protein and
peptide secretion and trafficking].
Length = 1296
Score = 31.1 bits (71), Expect = 0.52
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
++KK+ KK +K+ + + KK K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 30.7 bits (70), Expect = 0.72
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
++KKK KK +K + + KK+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 29.2 bits (66), Expect = 2.3
Identities = 10/37 (27%), Positives = 22/37 (59%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+EKKK ++ +K+ + + KK+KE + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 28.8 bits (65), Expect = 2.4
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 185 KNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ KKK K+ +K+ + + KK+K++ E
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEK 117
Score = 28.8 bits (65), Expect = 2.8
Identities = 10/40 (25%), Positives = 22/40 (55%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
++ R +KK KK E++ + + KK K+ + +K++
Sbjct: 81 TYFREKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 28.4 bits (64), Expect = 3.3
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
EKKK KK +K+ + KK+K+ + +K++
Sbjct: 85 EKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 28.0 bits (63), Expect = 4.8
Identities = 9/39 (23%), Positives = 22/39 (56%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
++KKK KK + + + KK+K+ + +K++ ++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRHVL 122
Score = 28.0 bits (63), Expect = 5.4
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+E+KK KK +K+ ++ + +KK+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
Score = 27.3 bits (61), Expect = 8.6
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
R+K+K KK+ +K+ + + K+K+ + +K++
Sbjct: 84 REKKKYKKDVEKRNRSYRLYLDKKRKELQALSEKQRH 120
>gnl|CDD|220357 pfam09716, ETRAMP, Malarial early transcribed membrane protein
(ETRAMP). These sequences represent a family of
proteins from the malaria parasite Plasmodium
falciparum, several of which have been shown to be
expressed specifically in the ring stage as well as the
rodent parasite Plasmodium yoelii. A homologue from
Plasmodium chabaudi was localized to the parasitophorous
vacuole membrane. Members have an initial hydrophobic,
Phe/Tyr-rich, stretch long enough to span the membrane,
a highly charged region rich in Lys, a second putative
transmembrane region and a second highly charged, low
complexity sequence region. Some members have up to 100
residues of additional C-terminal sequence. These genes
have been shown to be found in the sub-telomeric regions
of both Plasmodium falciparum and P. yoelii chromosomes.
Length = 82
Score = 28.8 bits (65), Expect = 0.52
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKKKIM 213
KKKK KK KK +KKKK KKKI+
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKKII 55
Score = 27.6 bits (62), Expect = 1.7
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 184 KKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
KKK+ KK KK +KKKK KK +
Sbjct: 25 NNVVAKKKKLKKLKKIDDDLEKKKKNKKKI 54
Score = 27.6 bits (62), Expect = 1.8
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKK 200
KKKK KK K EKKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.4 bits (59), Expect = 4.0
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKK 197
KKKK KK KK + +KK+K KKK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.4 bits (59), Expect = 4.2
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKK 198
KKKK KK KK + +K+KK KKK
Sbjct: 28 VAKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.4 bits (59), Expect = 4.3
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKK 203
KKKK K KK + +KKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.1 bits (58), Expect = 4.8
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKK 202
KKKK KK KK + +KKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 26.1 bits (58), Expect = 5.8
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKK 204
KKKK K KK + +KKKK KKK
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKK 53
Score = 25.3 bits (56), Expect = 8.8
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 186 NKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
KKKK +K KK +KKKK KKK I+
Sbjct: 29 AKKKKLKKLKKIDDDLEKKKKNKKKIII 56
>gnl|CDD|219621 pfam07890, Rrp15p, Rrp15p. Rrp15p is required for the formation of
60S ribosomal subunits.
Length = 132
Score = 29.6 bits (67), Expect = 0.54
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
DP+ + ++ K +KK K EK +KK K++ + K++ EK + K
Sbjct: 19 RKDPILSRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 29.6 bits (67), Expect = 0.62
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
R +K K KK+ K +K +KK K++ + +K++ +K + K + +K++ +RK
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVKPVLPEDLEKERRLRK 79
Score = 28.5 bits (64), Expect = 1.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ KK K KK K EK +KK K++ + +K++ + R +
Sbjct: 26 RSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVK 64
Score = 27.3 bits (61), Expect = 4.2
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ KK K KKK K +K + K K++ + +K++ +K + K + + KE
Sbjct: 25 SRSKKLLKAKKKLKSEKLEKKAKRQLRAEKRQALEKGRVKPVLPEDLEKERR 76
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 30.8 bits (70), Expect = 0.56
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+E K + + K KKKK E K KK K + KK+K
Sbjct: 568 EEAKVEAVDEVKFLKKKKGILDAGAFESTLKDKKNKVLPEAKKRK 612
Score = 29.6 bits (67), Expect = 1.2
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
E+ K E + K KKKK + K KK K + KK+K+
Sbjct: 568 EEAKVEAVDEVKFLKKKKGILDAGAFESTLKDKKNKVLPEAKKRKL 613
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 30.9 bits (69), Expect = 0.58
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K ++++E +K+++ KK K + K+KK+ KK KK K ++ KEE
Sbjct: 438 DRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKEE 491
Score = 28.6 bits (63), Expect = 3.4
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
K +K E+++ +K+++ KK K K KK+ KK KK K I R
Sbjct: 436 KLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIER 484
Score = 27.8 bits (61), Expect = 5.0
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+R+R K ++ + K + K KK+K +K + ++ + K K+ K
Sbjct: 576 KRKRLKNNIEQTQDGKPELKIKKRKAEKGDQRQELDRIVKSIKRSGK 622
Score = 27.8 bits (61), Expect = 5.6
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ E K E +K +K ++ ++ +KE++ KK K K KK+ + K+
Sbjct: 423 ESESDDKLETTIEKLDRKLRERQENRKERQLKKTKDDSDVDLKDKKESINKK 474
>gnl|CDD|217286 pfam02919, Topoisom_I_N, Eukaryotic DNA topoisomerase I, DNA
binding fragment. Topoisomerase I promotes the
relaxation of DNA superhelical tension by introducing a
transient single-stranded break in duplex DNA and are
vital for the processes of replication, transcription,
and recombination. This family may be more than one
structural domain.
Length = 215
Score = 30.2 bits (69), Expect = 0.60
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 165 KKEKKKKEEKKKKKKKK----KKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+K KK+ K +K + + +KEKKK K++KK K++K K+
Sbjct: 69 RKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 26.8 bits (60), Expect = 7.4
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 163 RRKKEKKK---KEEKKKKKKKKKKKKNK 187
+KEKKK KEEKK K++K K +
Sbjct: 96 EAEKEKKKAMSKEEKKAIKEEKDKLEEP 123
Score = 26.8 bits (60), Expect = 8.6
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
Query: 166 KEKKKKEEKKKKKKKKK---------KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
++ KKE K +K + K+KKK K++KK K++K K ++
Sbjct: 69 RKILKKEGGAIIKDLEKCDFTPIYEYFEAEKEKKKAMSKEEKKAIKEEKDKLEEPYG 125
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 30.9 bits (70), Expect = 0.61
Identities = 13/52 (25%), Positives = 24/52 (46%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K ++ EE +++ + K KK KKK K+ K ++++EE
Sbjct: 842 KMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEE 893
>gnl|CDD|236078 PRK07726, PRK07726, DNA topoisomerase III; Provisional.
Length = 658
Score = 30.5 bits (70), Expect = 0.61
Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 5/49 (10%)
Query: 168 KKKKEEKKKKKKKKKKKKNK-----KKKKEKKKKKKKKKKKKKKKKKKK 211
K + K K K K K ++ K+K KK + KKK
Sbjct: 610 GPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKKK 658
Score = 29.4 bits (67), Expect = 1.5
Identities = 10/53 (18%), Positives = 16/53 (30%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + K K K K + +E K+K KK + K
Sbjct: 604 KFDNLTGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCK 656
Score = 28.6 bits (65), Expect = 2.8
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 5/49 (10%)
Query: 168 KKKKEEKKKKKKKKKKKKNKK-----KKKEKKKKKKKKKKKKKKKKKKK 211
K K K K KN K ++ K+K KK + KK
Sbjct: 609 TGPKCPDCGKPMLKVKGKNGKMLVCQDRECGKRKNVSKKTNARCPNCKK 657
>gnl|CDD|235083 PRK02889, tolB, translocation protein TolB; Provisional.
Length = 427
Score = 30.7 bits (70), Expect = 0.63
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 2 VDFKS-KARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTE 51
VD + KA+ + GSV +L + Y VR +D G G S+T TE
Sbjct: 87 VDLGAWKAKGADALVAGSVTRLADGRYDVRFRLYDTVKGQSLGGLSLTVTE 137
>gnl|CDD|235370 PRK05244, PRK05244, Der GTPase activator; Provisional.
Length = 177
Score = 29.9 bits (68), Expect = 0.63
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KKKK K+ K K KK+ +++ + +++K+KKK K
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHK 38
Score = 29.5 bits (67), Expect = 0.83
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+++K K+ + K KKK +++ + + ++ K+KKK K K
Sbjct: 1 KKKKSSPKRSKGMAKSKKKTREELDAEARERKRKKKHKGLK 41
Score = 27.2 bits (61), Expect = 5.2
Identities = 24/88 (27%), Positives = 37/88 (42%), Gaps = 27/88 (30%)
Query: 152 PSDPVANSHRRRRKKEK---KKKEEKKKKKKKKKK-----------KKNKKKKKEK---- 193
P + +++ +E+ + +E K+KKK K K K K + ++K
Sbjct: 7 PKRSKGMAKSKKKTREELDAEARERKRKKKHKGLKSGSRHNEGNTQSKGKGQAQKKDPRI 66
Query: 194 --KKK-------KKKKKKKKKKKKKKKI 212
KK K K KKKK K KK K+
Sbjct: 67 GSKKPIPLGVEEKVKPKKKKPKSKKPKL 94
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 30.8 bits (69), Expect = 0.64
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNK-------KKKKEKKKKKKKKKKKKKKKK 208
+A+SHR K K K + K K+ K K K +K+ KK+ ++ + K+K
Sbjct: 1 MAHSHRSSLKGHKSYKSKHASKGALKRLYKGKVEKEPVGTGKPDKQMKKRDRRNRAKQKS 60
Query: 209 KKKIMRKEEN 218
I R +EN
Sbjct: 61 IGSIARIKEN 70
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 30.5 bits (69), Expect = 0.64
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
K + +KE + ++ KK ++ + +KKK+ ++ K +KK
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 29.7 bits (67), Expect = 0.89
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
E ++ KKK++ + K KK+ +E K +KK + K+K+
Sbjct: 82 ASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
Score = 29.7 bits (67), Expect = 1.0
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
K E +K+ + ++ KKK + + K+KK+ ++ K +KK
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 29.3 bits (66), Expect = 1.2
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K E++K+ + + KKK+E + KKKK+ ++ K +KK
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 28.9 bits (65), Expect = 1.6
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K E +K+ + + KKKE+ + KKKK+ ++ K +KKI
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKI 114
Score = 28.9 bits (65), Expect = 1.7
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ ++ KKK++ KKKKE ++ K +KK + K+K++
Sbjct: 82 ASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQL 123
Score = 28.6 bits (64), Expect = 2.6
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ + ++E + ++ K K++ + KKKK+ ++ K +KK + I K
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEK 121
Score = 28.2 bits (63), Expect = 3.0
Identities = 14/45 (31%), Positives = 26/45 (57%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K+ E ++ KKK++ + KKK+ E+ K +KK + K+K+
Sbjct: 78 KELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQ 122
Score = 27.8 bits (62), Expect = 4.7
Identities = 11/40 (27%), Positives = 24/40 (60%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+ EK+ + ++ KKK++ + KKK++ ++ K +KK
Sbjct: 74 PEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKK 113
Score = 27.4 bits (61), Expect = 5.0
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 149 FIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
P D S ++ KKKEE + KKKK+ ++ +KK + K+K+ + K
Sbjct: 71 DQKPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSSLQTK 130
Score = 27.4 bits (61), Expect = 6.3
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ ++ KKK++ + KKKK ++ K +KK + K+K+ + EE
Sbjct: 82 ASSLEAEQAKKKEEAEAKKKKEMEELKAVQKKIDQYIKEKQLSSSLQTKLTEE 134
>gnl|CDD|217512 pfam03359, GKAP, Guanylate-kinase-associated protein (GKAP)
protein.
Length = 342
Score = 30.6 bits (69), Expect = 0.65
Identities = 9/63 (14%), Positives = 23/63 (36%), Gaps = 2/63 (3%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK--KKKKKKKKKKKIMR 214
AN +++ KK K K ++ ++++++ + K+ K+
Sbjct: 265 ANDWQKKVPPPVPKKPAKGPIVKPAISREKSLDSSDRQRQEARSRLAAAKRAASFKQNSA 324
Query: 215 KEE 217
E
Sbjct: 325 TES 327
Score = 28.6 bits (64), Expect = 2.4
Identities = 8/56 (14%), Positives = 19/56 (33%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ + +KK KK K +EK +++++ + + R
Sbjct: 261 QQLKANDWQKKVPPPVPKKPAKGPIVKPAISREKSLDSSDRQRQEARSRLAAAKRA 316
Score = 28.2 bits (63), Expect = 3.6
Identities = 8/54 (14%), Positives = 22/54 (40%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+K+ KK K K ++K +++++ + + K+ ++N
Sbjct: 269 QKKVPPPVPKKPAKGPIVKPAISREKSLDSSDRQRQEARSRLAAAKRAASFKQN 322
>gnl|CDD|234874 PRK00955, PRK00955, hypothetical protein; Provisional.
Length = 620
Score = 30.7 bits (70), Expect = 0.68
Identities = 14/37 (37%), Positives = 16/37 (43%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K KK K K KK KK+KKK+KK
Sbjct: 584 PKCLIPPKKPKKKSNKKNNNNNYSSNNSKKRKKKRKK 620
>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1
[Posttranslational modification, protein turnover,
chaperones].
Length = 205
Score = 30.1 bits (68), Expect = 0.69
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
++ +++ ++ K K+ K N + K +K K+K K
Sbjct: 58 QRAEQRLQQAAKAKRAKDAAANAAEGKAFLEKNAKEKGVKT 98
Score = 27.0 bits (60), Expect = 5.9
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
E ++ E++ ++ K K+ + K +K K+K K
Sbjct: 51 EAALEALQRAEQRLQQAAKAKRAKDAAANAAEGKAFLEKNAKEKGVKT 98
>gnl|CDD|202101 pfam02050, FliJ, Flagellar FliJ protein.
Length = 122
Score = 29.1 bits (66), Expect = 0.71
Identities = 11/55 (20%), Positives = 37/55 (67%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++++E ++ +K+ ++ ++ ++ +++KK +K +++KKK++K+ R+E+
Sbjct: 58 DEAIAQQQQELEQAEKQVEQAREQWQEANQERKKLEKLLEREKKKEQKEENRREQ 112
>gnl|CDD|237276 PRK13024, PRK13024, bifunctional preprotein translocase subunit
SecD/SecF; Reviewed.
Length = 755
Score = 30.6 bits (70), Expect = 0.72
Identities = 11/22 (50%), Positives = 18/22 (81%)
Query: 191 KEKKKKKKKKKKKKKKKKKKKI 212
++++ KKKKK+KK KK + +KI
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEKI 754
Score = 30.2 bits (69), Expect = 0.99
Identities = 13/21 (61%), Positives = 17/21 (80%)
Query: 173 EKKKKKKKKKKKKNKKKKKEK 193
EK++ KKKKK+KK KK + EK
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 30.2 bits (69), Expect = 0.99
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 182 KKKKNKKKKKEKKKKKKKKKK 202
+K++ KKKKK KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.8 bits (68), Expect = 1.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 189 KKKEKKKKKKKKKKKKKKKKK 209
+K+ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.4 bits (67), Expect = 1.4
Identities = 11/21 (52%), Positives = 17/21 (80%)
Query: 188 KKKKEKKKKKKKKKKKKKKKK 208
+K++ KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.4 bits (67), Expect = 1.4
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 174 KKKKKKKKKKKKNKKKKKEKK 194
+K++ KKKKK+K KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.4 bits (67), Expect = 1.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 180 KKKKKKNKKKKKEKKKKKKKK 200
+K++ K KKK+K+ KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.4 bits (67), Expect = 1.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 185 KNKKKKKEKKKKKKKKKKKKK 205
+ ++ KK+KK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.0 bits (66), Expect = 2.2
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 176 KKKKKKKKKKNKKKKKEKKKK 196
+K++ KKKKK KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 29.0 bits (66), Expect = 2.3
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 175 KKKKKKKKKKKNKKKKKEKKK 195
+K++ KKKKK+ K KK E +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.7 bits (65), Expect = 2.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 179 KKKKKKKNKKKKKEKKKKKKK 199
+K++ KK KK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.7 bits (65), Expect = 2.8
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 187 KKKKKEKKKKKKKKKKKKKKK 207
+K++ +KKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.7 bits (65), Expect = 3.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 177 KKKKKKKKKNKKKKKEKKKKK 197
+K++ KKKK +KK K+ + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.3 bits (64), Expect = 3.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 172 EEKKKKKKKKKKKKNKKKKK 191
E+++ KKKKK+KK K + +
Sbjct: 733 EKRRLKKKKKRKKVKKWEVE 752
Score = 28.3 bits (64), Expect = 3.6
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 184 KKNKKKKKEKKKKKKKKKKKK 204
+K + KKK+K+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.3 bits (64), Expect = 4.0
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 160 HRRRRKKEKKKKEEKKKKKKK 180
+RR KK+KK+K+ KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 28.3 bits (64), Expect = 4.0
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 178 KKKKKKKKNKKKKKEKKKKKK 198
+K++ KKK K+KK +K + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.9 bits (63), Expect = 4.5
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 190 KKEKKKKKKKKKKKKKKKKKK 210
+K + KKKKK+KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
Score = 27.5 bits (62), Expect = 5.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 183 KKKNKKKKKEKKKKKKKKKKK 203
+K+ KKKK++KK KK + +K
Sbjct: 733 EKRRLKKKKKRKKVKKWEVEK 753
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 29.5 bits (67), Expect = 0.72
Identities = 13/56 (23%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 164 RKKEKK-KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+KKEK+ +KEE+K +K+ + +K K+++ ++K+++ ++K++ ++ +++++
Sbjct: 52 QKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQQAAQQELQQKQQ 107
Score = 29.5 bits (67), Expect = 0.80
Identities = 12/62 (19%), Positives = 40/62 (64%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A + K+ + + +KK+K+ +K+++K +K+ ++ +K K+++ ++K++++ +K+
Sbjct: 36 AQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQKQQELQQKQ 95
Query: 217 EN 218
+
Sbjct: 96 QA 97
Score = 28.8 bits (65), Expect = 1.5
Identities = 14/64 (21%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEK-KKKKKKKKKKKKKKKKKKIMR 214
++ S + +++ +KE KK + + +KK+K +K+++K +K+ ++ +K K++++ +
Sbjct: 27 LSESPAGKAAQKQLEKEFKKLQAELQKKEKELQKEEQKLQKQAATLSEEARKAKQQELQQ 86
Query: 215 KEEN 218
K++
Sbjct: 87 KQQE 90
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 29.2 bits (66), Expect = 0.73
Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 12/61 (19%)
Query: 165 KKEKKKKEEKKKKKK------------KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ +K+++EEK++K+K KK ++ K +KE K +K+KKKKKKK+
Sbjct: 29 EYDKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKELK 88
Query: 213 M 213
Sbjct: 89 N 89
Score = 26.9 bits (60), Expect = 4.8
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKK-------KEKKKKKKKKKKKKKKKKKKKI 212
RR K +K+ K +K+KKKKK K+ K +E K+ + + +KK ++ KK+I
Sbjct: 58 KGRRPKTARKESVAAKAAEKEKKKKKKKELKNFYRFQIRESKRNELAELRKKFEEDKKRI 117
>gnl|CDD|215565 PLN03083, PLN03083, E3 UFM1-protein ligase 1 homolog; Provisional.
Length = 803
Score = 30.6 bits (69), Expect = 0.75
Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 143 KTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKK-------------------KKKK 183
+ I S+ S+ K KKKK K KK
Sbjct: 390 QASSAGLIGSSEKSLGSNESSPAASNSDKGSKKKKGKSTSTKGGTAESIPDDEEDAPKKG 449
Query: 184 KKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KKN+KK ++K K K KK+ K N
Sbjct: 450 KKNQKKGRDKSSKVPSDSKAGGKKESVKSQEDNNN 484
Score = 27.1 bits (60), Expect = 8.5
Identities = 14/45 (31%), Positives = 21/45 (46%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KK KK +KK ++K K K KK+ K ++ + EE
Sbjct: 445 APKKGKKNQKKGRDKSSKVPSDSKAGGKKESVKSQEDNNNIPPEE 489
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 30.4 bits (68), Expect = 0.77
Identities = 12/59 (20%), Positives = 29/59 (49%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
N+ ++R + +K++E K K + K+ + +K++ +K + + KK + K
Sbjct: 241 DNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALK 299
Score = 30.4 bits (68), Expect = 0.82
Identities = 15/53 (28%), Positives = 26/53 (49%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KE K+ E +K++ +K + + KK +E K K K K++ K E+
Sbjct: 269 PKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAED 321
Score = 28.0 bits (62), Expect = 3.9
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ + E KK +E+ K K K K++ K +K+ + K+ + +KK++
Sbjct: 285 KAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKRE 331
Score = 28.0 bits (62), Expect = 4.7
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
P+D + ++ + +K++ EK + + KK ++ K K K K++ K +K+ + K
Sbjct: 263 PADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDK 322
Score = 27.7 bits (61), Expect = 5.2
Identities = 11/52 (21%), Positives = 27/52 (51%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K++ + +K+++ K K + KE K+ + +K++ +K + + EE
Sbjct: 245 KQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEE 296
Score = 27.3 bits (60), Expect = 7.4
Identities = 11/55 (20%), Positives = 30/55 (54%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
A + +++ E ++K+++ K K + K+ K+ + +K++ +K + + KK
Sbjct: 239 AQDNADKQRDEVRQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKN 293
>gnl|CDD|235334 PRK05035, PRK05035, electron transport complex protein RnfC;
Provisional.
Length = 695
Score = 30.3 bits (69), Expect = 0.81
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R ++EK +E + KK + + K+K + K KK + K + +N
Sbjct: 461 RLEREKAAREARHKKAAEARAAKDKDAVAAALARVKAKKAAATQPIVIKAGARPDN 516
Score = 28.8 bits (65), Expect = 2.4
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 162 RRRKKEKKKKEEKKKK--KKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
R ++EKKK EE K + ++ + ++ K ++ + KK + + K K
Sbjct: 439 RAIEQEKKKAEEAKARFEARQARLEREKAAREARHKKAAEARAAKDK 485
>gnl|CDD|203462 pfam06476, DUF1090, Protein of unknown function (DUF1090). This
family consists of several bacterial proteins of unknown
function and is known as YqjC in E. coli.
Length = 115
Score = 29.2 bits (66), Expect = 0.82
Identities = 10/47 (21%), Positives = 30/47 (63%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
R+ + +EK+++ +++++ K+ + K K EKK++K + + + ++
Sbjct: 68 RQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 28.4 bits (64), Expect = 1.3
Identities = 10/50 (20%), Positives = 31/50 (62%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
R R+ + ++KE++ +++++ K+ K +K +KK++K + + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 28.0 bits (63), Expect = 1.8
Identities = 9/45 (20%), Positives = 28/45 (62%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+++ K ++K+++ ++++E K+ + K K +KK++K+ +
Sbjct: 66 AERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQA 110
Score = 27.6 bits (62), Expect = 2.7
Identities = 9/50 (18%), Positives = 31/50 (62%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R ++ K +++E++ +++++ K+ + K K +KK++K + + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAELQE 114
Score = 26.8 bits (60), Expect = 4.2
Identities = 9/48 (18%), Positives = 31/48 (64%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ E++ K E+K+++ +++++ K+ + + K +KK++K + + ++
Sbjct: 65 RAERQAKVEEKEQEVAEREQELKEAQAKGDADKIEKKQRKLAEAQAEL 112
>gnl|CDD|153271 cd07307, BAR, The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization
module that binds membranes and detects membrane
curvature. BAR domains are dimerization, lipid binding
and curvature sensing modules found in many different
proteins with diverse functions including organelle
biogenesis, membrane trafficking or remodeling, and cell
division and migration. Mutations in BAR containing
proteins have been linked to diseases and their
inactivation in cells leads to altered membrane
dynamics. A BAR domain with an additional N-terminal
amphipathic helix (an N-BAR) can drive membrane
curvature. These N-BAR domains are found in amphiphysins
and endophilins, among others. BAR domains are also
frequently found alongside domains that determine lipid
specificity, such as the Pleckstrin Homology (PH) and
Phox Homology (PX) domains which are present in beta
centaurins (ACAPs and ASAPs) and sorting nexins,
respectively. A FES-CIP4 Homology (FCH) domain together
with a coiled coil region is called the F-BAR domain and
is present in Pombe/Cdc15 homology (PCH) family
proteins, which include Fes/Fes tyrosine kinases, PACSIN
or syndapin, CIP4-like proteins, and srGAPs, among
others. The Inverse (I)-BAR or IRSp53/MIM homology
Domain (IMD) is found in multi-domain proteins, such as
IRSp53 and MIM, that act as scaffolding proteins and
transducers of a variety of signaling pathways that link
membrane dynamics and the underlying actin cytoskeleton.
BAR domains form dimers that bind to membranes, induce
membrane bending and curvature, and may also be involved
in protein-protein interactions. The I-BAR domain
induces membrane protrusions in the opposite direction
compared to classical BAR and F-BAR domains, which
produce membrane invaginations. BAR domains that also
serve as protein interaction domains include those of
arfaptin and OPHN1-like proteins, among others, which
bind to Rac and Rho GAP domains, respectively.
Length = 194
Score = 29.7 bits (67), Expect = 0.82
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KK+ K+ ++++KK K + + ++K KK +KKKK K + ++++ +E
Sbjct: 90 KKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEK 143
Score = 28.6 bits (64), Expect = 2.1
Identities = 16/48 (33%), Positives = 27/48 (56%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K++ K+ KK++KK + + ++K KK +KKKK K +EE
Sbjct: 89 LKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEE 136
Score = 27.0 bits (60), Expect = 6.7
Identities = 12/49 (24%), Positives = 29/49 (59%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K+++KK +K + ++K KK +K+KK K + +++ ++ K+
Sbjct: 94 KEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKE 142
Score = 27.0 bits (60), Expect = 6.9
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
++RRKK K + + ++K KK + KKK K + +++ ++ K+K
Sbjct: 97 KKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEK 143
Score = 26.6 bits (59), Expect = 7.9
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+K KE KK++KK K + + +EK KK +KKKK K +
Sbjct: 89 LKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAE 132
>gnl|CDD|146145 pfam03357, Snf7, Snf7. This family of proteins are involved in
protein sorting and transport from the endosome to the
vacuole/lysosome in eukaryotic cells. Vacuoles/lysosomes
play an important role in the degradation of both lipids
and cellular proteins. In order to perform this
degradative function, vacuoles/lysosomes contain
numerous hydrolases which have been transported in the
form of inactive precursors via the biosynthetic pathway
and are proteolytically activated upon delivery to the
vacuole/lysosome. The delivery of transmembrane
proteins, such as activated cell surface receptors to
the lumen of the vacuole/lysosome, either for
degradation/downregulation, or in the case of
hydrolases, for proper localisation, requires the
formation of multivesicular bodies (MVBs). These late
endosomal structures are formed by invaginating and
budding of the limiting membrane into the lumen of the
compartment. During this process, a subset of the
endosomal membrane proteins is sorted into the forming
vesicles. Mature MVBs fuse with the vacuole/lysosome,
thereby releasing cargo containing vesicles into its
hydrolytic lumen for degradation. Endosomal proteins
that are not sorted into the intralumenal MVB vesicles
are either recycled back to the plasma membrane or Golgi
complex, or remain in the limiting membrane of the MVB
and are thereby transported to the limiting membrane of
the vacuole/lysosome as a consequence of fusion.
Therefore, the MVB sorting pathway plays a critical role
in the decision between recycling and degradation of
membrane proteins. A few archaeal sequences are also
present within this family.
Length = 169
Score = 29.5 bits (67), Expect = 0.82
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
+++ EKK K+ + + KK KK K+KK+ +K+ +
Sbjct: 14 DKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQ 59
Score = 29.1 bits (66), Expect = 1.2
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
R K+++ E+K KK + + KK KK K+ K+KK+ +K+ +
Sbjct: 7 RKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQLDQ 59
Score = 28.4 bits (64), Expect = 2.3
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK--KKKKIMRKE 216
+K + KK++ +KK KK + E KK KK K K+KK K+
Sbjct: 7 RKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQ 56
Score = 27.2 bits (61), Expect = 5.6
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
R+ +E KK+E +KK KK + + KK K+ K K+KK+ +K++
Sbjct: 7 RKAIRELDKKQESLEKKIKKLEAEIKKLAKKGNKDAALILLKQKKRYEKQL 57
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 30.4 bits (68), Expect = 0.86
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 149 FIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKN------KKKKKEKKKKKKKKKK 202
F+ PS + S R +KK+ E +K + +N +K ++ K+ KKK ++
Sbjct: 595 FVTPSTSLEKSMDRILHGQKKRAEGAVVFEKPLEATENFNPWLDRKMRRIKRIKKKAYRR 654
Query: 203 KKKKKKKKKIMRKEEN 218
++ K+ KK M +EEN
Sbjct: 655 IRRDKRLKKKMPEEEN 670
Score = 28.1 bits (62), Expect = 4.5
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
RK + K+ +KK ++ ++ K+ KKK E++ ++ +KK+
Sbjct: 639 RKMRRIKRIKKKAYRRIRRDKRLKKKMPEEENTQENHLGSEKKRHGG 685
>gnl|CDD|233605 TIGR01865, cas_Csn1, CRISPR-associated protein Cas9/Csn1, subtype
II/NMEMI. CRISPR loci appear to be mobile elements with
a wide host range. This model represents a protein found
only in CRISPR-containing species, near other
CRISPR-associated proteins (cas), as part of the NMENI
subtype of CRISPR/Cas locus. The species range so far
for this protein is animal pathogens and commensals only
[Mobile and extrachromosomal element functions, Other].
Length = 805
Score = 30.1 bits (68), Expect = 0.89
Identities = 12/61 (19%), Positives = 27/61 (44%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
P ++E+ K+ K++ KK ++K K+ K+ K++ + K I++
Sbjct: 514 PPDKIVIEMAREEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKNILK 573
Query: 215 K 215
Sbjct: 574 L 574
Score = 27.4 bits (61), Expect = 7.0
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E++ K+ K + KK E K K+ K+ K++ +N
Sbjct: 525 EEQGTNFGKRNSKERYKKNEDKIKEFASALGKEILKEEPTENSSKN 570
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 29.1 bits (66), Expect = 0.90
Identities = 15/58 (25%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK---KKKKKKKKKKKIMRKEEN 218
K +K+ E++ KK++ + +K K+ +K K+K +K + ++KK+K++ +K +
Sbjct: 16 GKAAQKQLEKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQE 73
Score = 28.7 bits (65), Expect = 1.4
Identities = 15/56 (26%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
Query: 164 RKKEKK-KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K EK+ +K ++K +K + ++KKEK+ +KK ++ ++K++K ++ ++K +
Sbjct: 35 EKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQ 90
Score = 27.5 bits (62), Expect = 3.5
Identities = 12/57 (21%), Positives = 37/57 (64%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ +KE +K +EK +K + ++KK+++ +KK ++ ++K++K ++ + ++++
Sbjct: 35 EKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQE 91
Score = 26.0 bits (58), Expect = 9.6
Identities = 15/58 (25%), Positives = 34/58 (58%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ K+ +K KE+ +K + +KK+KE +KK ++ ++K++K ++ R++E
Sbjct: 35 EKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQEFQRKQQKLQQDLQKRQQEE 92
>gnl|CDD|219248 pfam06978, POP1, Ribonucleases P/MRP protein subunit POP1. This
family represents a conserved region approximately 150
residues long located towards the N-terminus of the POP1
subunit that is common to both the RNase MRP and RNase P
ribonucleoproteins (EC:3.1.26.5). These RNA-containing
enzymes generate mature tRNA molecules by cleaving their
5' ends.
Length = 158
Score = 29.2 bits (66), Expect = 0.92
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
R+R K+E K K +KK K+ + + +K +K++K+KK
Sbjct: 52 RKRAKREMAKDNTPTKLSRKKPSKRLLRLALARPPNLSRKYRKRQKRKK 100
>gnl|CDD|222791 PHA00431, PHA00431, internal virion protein C.
Length = 746
Score = 30.1 bits (68), Expect = 0.94
Identities = 8/47 (17%), Positives = 24/47 (51%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ ++ ++K EE ++K K K+ + +++ ++K+K+
Sbjct: 692 KMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
Score = 29.8 bits (67), Expect = 1.2
Identities = 7/45 (15%), Positives = 21/45 (46%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
++ ++K ++ EK K K+ + ++ ++K+K+
Sbjct: 694 YQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
Score = 29.4 bits (66), Expect = 1.8
Identities = 7/48 (14%), Positives = 23/48 (47%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ ++ ++K E+ ++K K K + +++ ++K+K+
Sbjct: 691 SKMYQENQQKLAEEAREKALKDANKRAPIVAATQAREEVREKRKQTSG 738
Score = 27.5 bits (61), Expect = 7.6
Identities = 8/51 (15%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ +E ++K ++ ++K K NK+ + +++ ++K+K+ +
Sbjct: 691 SKMYQENQQKLAEEAREKALKDA-NKRAPIVAATQAREEVREKRKQTSGFM 740
>gnl|CDD|233063 TIGR00631, uvrb, excinuclease ABC, B subunit. All proteins in this
family for wich functions are known are DNA helicases
that function in the nucleotide excision repair and are
endonucleases that make the 3' incision next to DNA
damage. They are part of a pathway requiring UvrA, UvrB,
UvrC, and UvrD homologs. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 655
Score = 30.0 bits (68), Expect = 0.97
Identities = 19/69 (27%), Positives = 30/69 (43%), Gaps = 15/69 (21%)
Query: 162 RRRKKE---------------KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
RRRK + K ++ + K+K+ KKKK E KK+ KK
Sbjct: 566 RRRKIQMAYNEEHGITPQTIRKPIRDILDIELKEKEDAAKKKKKGEDLSDLSKKELKKLI 625
Query: 207 KKKKKIMRK 215
K+ +K M++
Sbjct: 626 KQLEKEMKQ 634
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 29.9 bits (68), Expect = 0.98
Identities = 9/38 (23%), Positives = 16/38 (42%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKK 194
A ++ KKK+E K + K+ K K ++
Sbjct: 531 AQYLALKQPAVKKKEEAAAPKAETVKRSSKKLSYKLQR 568
Score = 27.2 bits (61), Expect = 9.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K+ KKK+E K + K+ KK K+ R+ E
Sbjct: 537 KQPAVKKKEEAAAPKAETVKRSSKKLSYKLQRELE 571
>gnl|CDD|218585 pfam05424, Duffy_binding, Duffy binding domain. This domain is
found in Plasmodium Duffy binding proteins. Plasmodium
vivax and Plasmodium knowlesi merozoites invade human
erythrocytes that express Duffy blood group surface
determinants. The Duffy receptor family is localised in
micronemes, an organelle found in all organisms of the
phylum Apicomplexa.
Length = 276
Score = 29.6 bits (67), Expect = 0.99
Identities = 23/46 (50%), Positives = 26/46 (56%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+E+KKK EK KKK K+KK KK K K KK KK KKK
Sbjct: 199 RERKKKLEKLKKKCKEKKCNKYCSKKCTKCKNACKKYKKWIDNKKK 244
Score = 26.9 bits (60), Expect = 7.3
Identities = 23/49 (46%), Positives = 25/49 (51%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K KK K K KK KK KKKE K+KKK KK KK+ KK
Sbjct: 217 CNKYCSKKCTKCKNACKKYKKWIDNKKKEWDKQKKKYKKYKKRNNKKNY 265
>gnl|CDD|219897 pfam08549, SWI-SNF_Ssr4, Fungal domain of unknown function
(DUF1750). This is a fungal domain of unknown function.
Length = 669
Score = 30.0 bits (67), Expect = 0.99
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 2/74 (2%)
Query: 146 EGIFIHPSDPV--ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
G F P P + H + + K + E + + KK E +K KK+ ++
Sbjct: 331 AGFFDAPVGPSTGDSDHGPEKPQATKLEPEVADEFADRVAKKVADMTAEIEKLKKRHARR 390
Query: 204 KKKKKKKKIMRKEE 217
+K + ++ E
Sbjct: 391 MEKFNRTSALKDAE 404
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 29.7 bits (67), Expect = 1.0
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K +K KKK K+K+K +K +K + KK KK K+I R+
Sbjct: 69 KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRR 106
Score = 27.4 bits (61), Expect = 6.1
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K +K KKK K+K K +K +K + KK KK K+ ++++
Sbjct: 69 KDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRV 107
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 29.9 bits (68), Expect = 1.0
Identities = 12/52 (23%), Positives = 38/52 (73%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
R +E+ + E ++K++K+KK ++ + E++ ++K+++K+++++++ KI+
Sbjct: 106 ERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILE 157
Score = 29.5 bits (67), Expect = 1.4
Identities = 11/69 (15%), Positives = 46/69 (66%), Gaps = 14/69 (20%)
Query: 161 RRRRKKEKKKKE---------EKKKKKKKKKKKKNKK-----KKKEKKKKKKKKKKKKKK 206
+R K++K ++E E+K+++K++++++ K ++K +++++++ +++++K
Sbjct: 118 EKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERK 177
Query: 207 KKKKKIMRK 215
++K++ + +
Sbjct: 178 EEKEREVAR 186
Score = 29.1 bits (66), Expect = 1.9
Identities = 12/63 (19%), Positives = 42/63 (66%), Gaps = 5/63 (7%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKK-----KKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
R +++++ + +EK++K+KK ++ + + ++KE++K+++++++ K + +++ +
Sbjct: 106 ERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQREKAER 165
Query: 216 EEN 218
EE
Sbjct: 166 EEE 168
Score = 28.3 bits (64), Expect = 3.2
Identities = 11/56 (19%), Positives = 42/56 (75%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R +KE++K+ E++++ K + ++ K +++E+++ +++++K++K+++ ++ ++E
Sbjct: 137 RIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQE 192
Score = 27.6 bits (62), Expect = 4.8
Identities = 7/61 (11%), Positives = 41/61 (67%), Gaps = 6/61 (9%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKK------KKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ + +EE++++K+K+++++ + +++EK+++++ +++ +++++ +I+ +
Sbjct: 49 EERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERI 108
Query: 217 E 217
+
Sbjct: 109 Q 109
Score = 27.2 bits (61), Expect = 6.6
Identities = 10/57 (17%), Positives = 40/57 (70%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R+ +KE++++EE K + +++K + +++++ +++++K++K+++ + + + E+
Sbjct: 140 RKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAED 196
Score = 27.2 bits (61), Expect = 7.0
Identities = 8/46 (17%), Positives = 34/46 (73%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
R+K ++++ E++ +++++ + ++ ++E + + ++K++K+KK ++
Sbjct: 83 REKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLRE 128
Score = 27.2 bits (61), Expect = 7.2
Identities = 11/58 (18%), Positives = 40/58 (68%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++R K E+K++E + + ++++ K +++E+++K+K+++++ + +++I +E+
Sbjct: 28 EKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREK 85
>gnl|CDD|129660 TIGR00569, ccl1, cyclin ccl1. All proteins in this family for
which functions are known are cyclins that are
components of TFIIH, a complex that is involved in
nucleotide excision repair and transcription initiation.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, StanfordUniversity) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 305
Score = 29.8 bits (67), Expect = 1.0
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
R + KK EE + +K KKK + ++ K +K+K
Sbjct: 249 RELRILVKKYEEPRSEKVAALKKKLDECHSIEENLSSVKIRKRK 292
>gnl|CDD|222592 pfam14204, Ribosomal_L18_c, Ribosomal L18 C-terminal region. This
domain is the C-terminal end of ribosomal L18/L5
proteins.
Length = 93
Score = 28.3 bits (64), Expect = 1.0
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
R +KK+EKK+ K + K+ KK E++K + +K
Sbjct: 56 RADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 26.7 bits (60), Expect = 4.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
EE KK + +KKKEKK+ K + K+ KK
Sbjct: 45 EEMYKKAHAAIRADPSRKKKEKKEVKAESKRYNAKK 80
Score = 25.6 bits (57), Expect = 8.3
Identities = 12/45 (26%), Positives = 22/45 (48%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
KK +KKK+KK+ + K+ KK +++K + +K
Sbjct: 49 KKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKARVAQK 93
Score = 25.6 bits (57), Expect = 8.5
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 193 KKKKKKKKKKKKKKKKKKKIMRKE 216
KKK+KK+ K + K+ KK+ ++
Sbjct: 62 KKKEKKEVKAESKRYNAKKLTLEQ 85
Score = 25.6 bits (57), Expect = 8.9
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
E+ KK + + +KK++KK+ K + K+ KK RK
Sbjct: 45 EEMYKKAHAAIRADPSRKKKEKKEVKAESKRYNAKKLTLEQRKA 88
>gnl|CDD|223747 COG0675, COG0675, Transposase and inactivated derivatives [DNA
replication, recombination, and repair].
Length = 364
Score = 29.6 bits (66), Expect = 1.1
Identities = 15/64 (23%), Positives = 34/64 (53%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
P+ R+ K+ KK ++ +KK + K++K K K + +++ + ++K K KK++
Sbjct: 197 PIPRDGRKLLKRLKKAQKRLSRKKSRSKRRKKAKLKLARLRERIRNRRKDFHKLAKKLVE 256
Query: 215 KEEN 218
+
Sbjct: 257 LADL 260
>gnl|CDD|223839 COG0768, FtsI, Cell division protein FtsI/penicillin-binding
protein 2 [Cell envelope biogenesis, outer membrane].
Length = 599
Score = 29.7 bits (67), Expect = 1.1
Identities = 8/52 (15%), Positives = 20/52 (38%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
A+ + + + K+E K + +K+ ++ K K + +K
Sbjct: 85 TADPRKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLARK 136
Score = 29.7 bits (67), Expect = 1.4
Identities = 10/49 (20%), Positives = 16/49 (32%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
RK + E K + K + K K+ K K + +K
Sbjct: 88 PRKITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLARK 136
Score = 29.3 bits (66), Expect = 1.7
Identities = 9/76 (11%), Positives = 21/76 (27%), Gaps = 1/76 (1%)
Query: 143 KTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+ + P + + K E K + K+ + K K + +K
Sbjct: 79 VPVYSLTADPRK-ITDEPLEATKDELAAKLLALLEDLDKRALLKELKSKSRLFTPLARKT 137
Query: 203 KKKKKKKKKIMRKEEN 218
++ +I
Sbjct: 138 NLTPEQAARIAELLLK 153
>gnl|CDD|221049 pfam11262, Tho2, Transcription factor/nuclear export subunit
protein 2. THO and TREX form a eukaryotic complex which
functions in messenger ribonucleoprotein metabolism and
plays a role in preventing the transcription-associated
genetic instability. Tho2, along with four other
subunits forms THO.
Length = 296
Score = 29.6 bits (67), Expect = 1.2
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+E ++ +K+ K+ + +KKKK+KK+ K KK
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKK 66
Score = 28.1 bits (63), Expect = 3.2
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKK-KKEKKKKKKKKKKKKKKKKKKK 211
++ ++ + KKKK+KK+ K KK ++E KK + +K KK+ ++K
Sbjct: 37 EKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIEHNEKTKKRLSEEK 89
Score = 27.3 bits (61), Expect = 5.6
Identities = 11/37 (29%), Positives = 22/37 (59%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+++ ++ +K+ K+ + KKKK+KK+ K KK
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKK 66
Score = 27.3 bits (61), Expect = 6.5
Identities = 14/47 (29%), Positives = 27/47 (57%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KE ++ E++ K+ +KKKK++K+ K KK +++ KK +
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLEEELKKHIE 76
Score = 26.9 bits (60), Expect = 8.5
Identities = 11/39 (28%), Positives = 20/39 (51%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
K+ ++ +K+ + KKKK+KK+ K KK+
Sbjct: 30 DKEIERLEKQIKELDSSSSGIDKKKKEKKRLKSLIKKLE 68
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 29.6 bits (67), Expect = 1.3
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
E K ++ + +KKK+ E+K KK++KK+K K+++K++I
Sbjct: 635 ELMKIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKERI 680
Score = 27.7 bits (62), Expect = 6.5
Identities = 14/45 (31%), Positives = 30/45 (66%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K K+ + +KKK+ K +++ KK++KK+K K+++K++ +I
Sbjct: 638 KIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKERIEI 682
Score = 27.7 bits (62), Expect = 6.6
Identities = 12/44 (27%), Positives = 27/44 (61%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
K ++ + +KKK+ K ++K K+++KK+K K+++K+
Sbjct: 635 ELMKIKQIFRNWIEKKKEFKILDYTEEKTKKEEKKEKNKREEKE 678
>gnl|CDD|235040 PRK02463, PRK02463, OxaA-like protein precursor; Provisional.
Length = 307
Score = 29.3 bits (66), Expect = 1.3
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R++ +E K K K +K + + KKKKK + K++K
Sbjct: 256 RKQIAEEFAKNPPKAYKSPSGRKDVTPSQNQAIASLPKKKKKNRNAGKQRK 306
Score = 28.5 bits (64), Expect = 2.9
Identities = 11/46 (23%), Positives = 19/46 (41%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ + +K+ E+ K K K +K + + KKKKK
Sbjct: 252 KPRLRKQIAEEFAKNPPKAYKSPSGRKDVTPSQNQAIASLPKKKKK 297
Score = 27.8 bits (62), Expect = 4.3
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKK--KNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R++ E+ K K K +K + + KKKKK + K++K+
Sbjct: 256 RKQIAEEFAKNPPKAYKSPSGRKDVTPSQNQAIASLPKKKKKNRNAGKQRKR 307
Score = 27.4 bits (61), Expect = 6.5
Identities = 12/46 (26%), Positives = 19/46 (41%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ + K+ EE K K K + +K + + KKKKK
Sbjct: 252 KPRLRKQIAEEFAKNPPKAYKSPSGRKDVTPSQNQAIASLPKKKKK 297
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 29.7 bits (67), Expect = 1.3
Identities = 9/55 (16%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 160 HRRRRKKEKK--KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
R+ + E+K + EE ++ + ++ K+ +K +++ +K ++ ++ K + +++
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELREL 225
Score = 27.8 bits (62), Expect = 5.7
Identities = 10/51 (19%), Positives = 34/51 (66%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
KE+K++ E+K ++ ++ ++ + +E +K+ +K +++ +K ++ + ++ E
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAE 221
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 28.9 bits (65), Expect = 1.3
Identities = 9/44 (20%), Positives = 25/44 (56%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
KK E +++ + +K+ +++KK +K K+K +++++
Sbjct: 33 KKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEEL 76
Score = 28.9 bits (65), Expect = 1.3
Identities = 8/53 (15%), Positives = 28/53 (52%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+R +K + + +++ + K+ +++K+ +K K+K ++++ K +
Sbjct: 27 KPNRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQ 79
Score = 28.9 bits (65), Expect = 1.4
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KE EE+KK +K K+K ++++ + + + + K KK
Sbjct: 51 KELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKATKK 96
Score = 27.3 bits (61), Expect = 4.1
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E+K + ++ + KE +++KK +K K+K + +N
Sbjct: 32 EKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKN 78
Score = 26.6 bits (59), Expect = 7.6
Identities = 10/42 (23%), Positives = 21/42 (50%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+E+KK +K K+K ++++ + E + K KK+
Sbjct: 56 PEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKATKKQ 97
Score = 26.6 bits (59), Expect = 8.6
Identities = 9/47 (19%), Positives = 23/47 (48%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ +K+ +++KK +K KEK ++++ K + + + K
Sbjct: 48 ELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATENNTVKAT 94
>gnl|CDD|237496 PRK13766, PRK13766, Hef nuclease; Provisional.
Length = 773
Score = 29.8 bits (68), Expect = 1.3
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK----KKKKKKKIMRKEEN 218
R+KEKK KEE K K KK + +++K ++++K ++ K K K+ +EE
Sbjct: 490 RRKEKKMKEELKNLKGILNKKLQELDEEQKGEEEEKDEQLSLDDFVKSKGKEEEEEEEK 548
>gnl|CDD|241400 cd13246, PH_Scd1, Shape and Conjugation Deficiency 1 Pleckstrin
homology (PH) domain. Fission yeast Scd1 is an exchange
factor for Cdc42 and an effector of Ras1, the homolog of
the human H-Ras. Scd2/Bem1 mediates Cdc42 activation by
binding to Scd1/Cdc24 and to Cdc42. Ras1 regulates
Scd1/Cdc24/Ral1, which is a putative guanine nucleotide
exchange factor for Cdc42, a member of the Rho family of
Ras-like proteins. Cdc42 then activates the Shk1/Orb2
protein kinase. Scd1 interacts with Klp5 and Klp6
kinesins to mediate cytokinesis. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 148
Score = 28.8 bits (65), Expect = 1.3
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKK 196
KE KKKKKK K K+ K+KKKK
Sbjct: 61 KEVKKKKKKSSLKSKSSSSSKKKKKK 86
>gnl|CDD|232925 TIGR00335, primase_sml, DNA primase, eukaryotic-type, small
subunit, putative. Archaeal members differ
substantially from eukaryotic members and should be
considered putative pending experimental evidence. The
protein is universal and single copy among completed
archaeal and eukarotic genomes to date. DNA primase
creates RNA primers needed for DNA replication.This
model is named putative because the assignment is
putative for archaeal proteins. Eukaryotic proteins
scoring above the trusted cutoff can be considered
authentic [DNA metabolism, DNA replication,
recombination, and repair].
Length = 297
Score = 29.5 bits (66), Expect = 1.4
Identities = 12/57 (21%), Positives = 21/57 (36%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R K +++ K K + K KE K +KK + KI+ ++
Sbjct: 194 NRLLLKALEEEILTSKLKILPNDLRKWKLIKEVIFKSEKKDYSALEIYIDKIVLDDK 250
>gnl|CDD|216337 pfam01159, Ribosomal_L6e, Ribosomal protein L6e.
Length = 108
Score = 28.4 bits (64), Expect = 1.4
Identities = 14/35 (40%), Positives = 26/35 (74%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K++KKKKKKK++ + +KK+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 27.6 bits (62), Expect = 2.1
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K++KKKKKKK + EKK+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 27.2 bits (61), Expect = 2.8
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
+R KK+KKKK E + +KK+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 27.2 bits (61), Expect = 3.2
Identities = 13/35 (37%), Positives = 25/35 (71%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K++KKKKKKK + + ++K+KK+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 26.4 bits (59), Expect = 4.9
Identities = 13/35 (37%), Positives = 26/35 (74%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK 195
+R +KK+KKK E + +KK+KK+ ++++K ++K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
Score = 26.4 bits (59), Expect = 5.3
Identities = 13/36 (36%), Positives = 25/36 (69%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K++KKKKKK + + +KK+KK+ +++K +K +
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKAV 73
Score = 26.0 bits (58), Expect = 8.9
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
K EKKKKKKK + + +KK++K+ +++K +K
Sbjct: 38 KREKKKKKKKSEGEFFAEKKEKKEVSEQRKADQKA 72
>gnl|CDD|223095 COG0016, PheS, Phenylalanyl-tRNA synthetase alpha subunit
[Translation, ribosomal structure and biogenesis].
Length = 335
Score = 29.5 bits (67), Expect = 1.4
Identities = 7/51 (13%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 162 RRRKKEKKKKEEKKKKKKK--KKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
++ + EE+K+ + KK+ + E + + ++ +K
Sbjct: 45 LKKLGKLSPLEERKEVGALINELKKEVEDAITELTPELEAAGLWERLAFEK 95
Score = 29.1 bits (66), Expect = 1.9
Identities = 8/52 (15%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKK-----EKKKKKKKKKKKKKKKKKKKI 212
+K K +++K+ N+ KK+ + + + ++ +KI
Sbjct: 45 LKKLGKLSPLEERKEVGALINELKKEVEDAITELTPELEAAGLWERLAFEKI 96
>gnl|CDD|217348 pfam03064, U79_P34, HSV U79 / HCMV P34. This family represents
herpes virus protein U79 and cytomegalovirus early
phosphoprotein P34 (UL112).
Length = 238
Score = 29.1 bits (65), Expect = 1.4
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+K K++EK++ + +K K++++KK+E+K++ + K+
Sbjct: 154 KSDDEHRKRSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGG 201
Score = 28.7 bits (64), Expect = 2.2
Identities = 9/62 (14%), Positives = 29/62 (46%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
+RR ++ +K +E ++KK+++K++ ++ K+ + K + +
Sbjct: 162 RSGKQKEKRRVEDSQKHKEDRRKKQEEKRRNDEDKRPGGGGGSSGGQSGLSTKDEPPKEK 221
Query: 215 KE 216
++
Sbjct: 222 RQ 223
>gnl|CDD|240292 PTZ00148, PTZ00148, 40S ribosomal protein S8; Provisional.
Length = 205
Score = 28.8 bits (65), Expect = 1.5
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
KKKK KK ++ KK KKK + K + +KK KI
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHKI 156
Score = 27.6 bits (62), Expect = 3.9
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
KKKK KK+++NKK KK+ + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 26.9 bits (60), Expect = 6.9
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
KKKK KK+++ K KKK E K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 26.9 bits (60), Expect = 8.1
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
KKKK KK++ KK K+K + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 26.9 bits (60), Expect = 8.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
+KK+ KK+EE KK KKK + K + ++K K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 26.5 bits (59), Expect = 9.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
KKKK +K+++ KK KKK K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
Score = 26.5 bits (59), Expect = 10.0
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
KKKK KK+++ K KKK + K + +KK K
Sbjct: 123 KKKKYKKEEENKKAKKKSESLVAKLEVRKKNHK 155
>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import
receptor (72 kDa mitochondrial outermembrane protein)
(mitochondrial import receptor for the ADP/ATP carrier)
(translocase of outermembrane tom70). [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 615
Score = 29.6 bits (66), Expect = 1.5
Identities = 12/36 (33%), Positives = 27/36 (75%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+K +++++ K K KKE++K+K+ +K+ + K ++KK
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKK 92
Score = 29.2 bits (65), Expect = 1.7
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+K +++++ K K KK++ K+K+ EK+ + K ++KK K + +E
Sbjct: 57 RKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPKNAPVEPADEL 107
Score = 27.3 bits (60), Expect = 7.3
Identities = 14/45 (31%), Positives = 27/45 (60%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
V + ++++E K K KK+++K+K+ +K + K E+KK K
Sbjct: 53 VYYQRKGQQQRESKPKISKKERRKRKQAEKETEGKTEEKKSTAPK 97
>gnl|CDD|217020 pfam02403, Seryl_tRNA_N, Seryl-tRNA synthetase N-terminal domain.
This domain is found associated with the Pfam tRNA
synthetase class II domain (pfam00587) and represents
the N-terminal domain of seryl-tRNA synthetase.
Length = 108
Score = 27.9 bits (63), Expect = 1.5
Identities = 11/56 (19%), Positives = 28/56 (50%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++E + + E+ + ++ + K+ K KK+K+ + + K+ K + K + E
Sbjct: 36 EERRELQVELEELQAERNELSKEIGKAKKKKEDAEALIAEVKELKDELKALEAELR 91
Score = 27.6 bits (62), Expect = 2.0
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKK-KNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R++ + + EE + ++ + K+ KKKKE + + K+ K + K
Sbjct: 36 EERRELQVELEELQAERNELSKEIGKAKKKKEDAEALIAEVKELKDELKAL 86
>gnl|CDD|223630 COG0556, UvrB, Helicase subunit of the DNA excision repair complex
[DNA replication, recombination, and repair].
Length = 663
Score = 29.5 bits (67), Expect = 1.5
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKN----KKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
RRR + +E + KKK ++ + ++ E K K +KK K KK+ +K+++K
Sbjct: 570 RRREIQMAYNEEHGITPQTIKKKIRDILDGEYEEDEYKAKIEKKASKMSKKELEKLIKKL 629
Query: 217 E 217
E
Sbjct: 630 E 630
>gnl|CDD|224872 COG1961, PinR, Site-specific recombinases, DNA invertase Pin
homologs [DNA replication, recombination, and repair].
Length = 222
Score = 29.0 bits (65), Expect = 1.6
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
R R E +K K+ + K K +KK E++ ++ +I R
Sbjct: 132 RTRAGIEAARKAGKEGGRPPGYKIKKGRKKAEEQAAAVRRLLADGLGSYSEIARA 186
>gnl|CDD|218311 pfam04888, SseC, Secretion system effector C (SseC) like family.
SseC is a secreted protein that forms a complex together
with SecB and SecD on the surface of Salmonella. All
these proteins are secreted by the type III secretion
system. Many mucosal pathogens use type III secretion
systems for the injection of effector proteins into
target cells. SecB, SseC and SecD are inserted into the
target cell membrane. where they form a small pore or
translocon. In addition to SseC, this family includes
the bacterial secreted proteins PopB, PepB, YopB and
EspD which are thought to be directly involved in pore
formation, and type III secretion system translocon.
Length = 303
Score = 29.4 bits (66), Expect = 1.6
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 170 KKEEKKKKKKKKK----KKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K EK+ K K ++ + K +KK +E +++ KK +K ++ KK I
Sbjct: 11 KLAEKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAEEAKKSGI 57
Score = 27.1 bits (60), Expect = 8.7
Identities = 11/37 (29%), Positives = 26/37 (70%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K+ K+K ++ E+ + K++KK ++ +++ KK + K E
Sbjct: 14 EKQAKSKLQQLERARDKQEKKAEEYQEQIKKAIEKAE 50
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 28.4 bits (64), Expect = 1.6
Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 9/53 (16%)
Query: 174 KKKKKKKKKKKK---NKKKKKE------KKKKKKKKKKKKKKKKKKKIMRKEE 217
KKKK KKK ++ +K+ +KE K+K++++KK +++ K+K++ R EE
Sbjct: 1 KKKKAKKKGVEEVVFDKEARKEYLTGFHKRKQQRRKKAQEEAKEKEREERIEE 53
Score = 28.1 bits (63), Expect = 2.1
Identities = 13/52 (25%), Positives = 40/52 (76%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+R+++ +KK +E+ K+K+++++ + +K+ +E++K++ +K+ K++K+ K +
Sbjct: 28 HKRKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLL 79
>gnl|CDD|221659 pfam12597, DUF3767, Protein of unknown function (DUF3767). This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 112 and 199 amino
acids in length.
Length = 119
Score = 28.1 bits (63), Expect = 1.6
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKK 191
R RR+K + ++ + +KK KK ++K++
Sbjct: 89 RYRRRKSFQGMKKAVEAMAEKKAKKLREKEE 119
>gnl|CDD|192488 pfam10228, DUF2228, Uncharacterized conserved protein (DUF2228).
This is a family of conserved proteins of approximately
700 residues found from worms to humans.
Length = 253
Score = 28.9 bits (65), Expect = 1.7
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK---KKKKKKKKKKKKKIMRK 215
KK KE KKKK KK ++ E K+ ++K K K++KKK++ K
Sbjct: 93 TKKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRKKKVVTK 144
Score = 28.2 bits (63), Expect = 3.2
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K K+ KKKK + KK ++ + K+ ++K K+M++ +
Sbjct: 93 TKKSKEIPFKKKKISALKKIQELLTEWAKELGLSLEQKTKVMKQRK 138
>gnl|CDD|225123 COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC
component [Carbohydrate transport and metabolism].
Length = 472
Score = 29.2 bits (66), Expect = 1.7
Identities = 9/43 (20%), Positives = 14/43 (32%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K E + + K K K + + + K KKI
Sbjct: 339 KTESEDDLEAATAKMKEMKGESKGQSSALAADVKNDLSNVKKI 381
>gnl|CDD|223599 COG0525, ValS, Valyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 877
Score = 29.5 bits (67), Expect = 1.7
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 161 RRRRKKEKKK-KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
R +KE +K ++E + +KK + K E+ +K+K+K + + K K+
Sbjct: 816 LARLEKELEKLEKEIDRIEKKLSNEGFVAKAPEEVVEKEKEKLAEYQVKLAKL 868
>gnl|CDD|214697 smart00498, FH2, Formin Homology 2 Domain. FH proteins control
rearrangements of the actin cytoskeleton, especially in
the context of cytokinesis and cell polarisation.
Members of this family have been found to interact with
Rho-GTPases, profilin and other actin-assoziated
proteins. These interactions are mediated by the
proline-rich FH1 domain, usually located in front of FH2
(but not listed in SMART). Despite this cytosolic
function, vertebrate formins have been assigned
functions within the nucleus. A set of Formin-Binding
Proteins (FBPs) has been shown to bind FH1 with their WW
domain.
Length = 392
Score = 29.2 bits (66), Expect = 1.7
Identities = 8/53 (15%), Positives = 27/53 (50%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ KK++EE++++KK K+ ++ ++K++ + ++ ++
Sbjct: 334 AEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNPSMDFEVERDFLGVLDS 386
Score = 27.7 bits (62), Expect = 5.2
Identities = 7/40 (17%), Positives = 25/40 (62%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
+ ++ KK++++++++KK K+ E ++ ++K++
Sbjct: 331 SKAAEENIKKEEEEEERRKKLVKETTEYEQSSSRQKERNP 370
>gnl|CDD|181988 PRK09609, PRK09609, hypothetical protein; Provisional.
Length = 312
Score = 28.9 bits (65), Expect = 1.8
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK----KKKKKKKKKKKKKKIM 213
+ R K K K+K++ + +K +K K+K +KKKKK +K ++K +
Sbjct: 110 KESRIKRYDNKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKKLEKTNEEKSL 166
Score = 27.3 bits (61), Expect = 7.0
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+ + K+ + K K+K++ + +K +K K+K +KKKKK+ + E
Sbjct: 110 KESRIKRYDNKIFKQKEQYDFALENPNSEKIQKIKQKIILLEKKKKKLEKTNEE 163
>gnl|CDD|192718 pfam11176, DUF2962, Protein of unknown function (DUF2962). This
eukaryotic family of proteins has no known function.
Length = 155
Score = 28.4 bits (64), Expect = 1.8
Identities = 12/50 (24%), Positives = 26/50 (52%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
K KK++ K +K K+ N+ ++ K +KKK ++ +K+ + +
Sbjct: 3 TKNIAKKKKVLHPKSRKAKQLNRATLRDDKLEKKKAERAEKRSLELDRLF 52
>gnl|CDD|234707 PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.
Length = 64
Score = 26.8 bits (60), Expect = 2.0
Identities = 13/43 (30%), Positives = 28/43 (65%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K+K EK ++ ++++ +K EK+K+KK +K+++KK +
Sbjct: 20 KRKVEKAGILRELRRREFYEKPSEKRKRKKAAARKRRRKKLAR 62
>gnl|CDD|221550 pfam12366, Casc1, Cancer susceptibility candidate 1. This domain
family is found in eukaryotes, and is typically between
216 and 263 amino acids in length. Casc1 has many SNPs
associated with cancer susceptibility.
Length = 227
Score = 28.5 bits (64), Expect = 2.0
Identities = 9/57 (15%), Positives = 20/57 (35%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
++ R + K E+ + + K+ K + K + K K + + M
Sbjct: 57 MDTFHVRYELYISKIAEEAEGARGYVTDIPKEYKAKPVKYLEIPKPIKDPPELPEGM 113
>gnl|CDD|220129 pfam09159, Ydc2-catalyt, Mitochondrial resolvase Ydc2 / RNA
splicing MRS1. Members of this family adopt a secondary
structure consisting of two beta sheets and one alpha
helix, arranged as a beta-alpha-beta motif. Each beta
sheet has five strands, arranged in a 32145 order, with
the second strand being antiparallel to the rest.
Mitochondrial resolvase Ydc2 is capable of resolving
Holliday junctions and cleaves DNA after 5'-CT-3' and
5'-TT-3' sequences. This family also contains the
mitochondrial RNA-splicing protein MRS1 which is
involved in the excision of group I introns.
Length = 254
Score = 28.9 bits (65), Expect = 2.0
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 186 NKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ + +KKK + KKK K KK +I
Sbjct: 147 ERTEILAEKKKPRSKKKSSKNSKKLRI 173
Score = 28.1 bits (63), Expect = 3.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 190 KKEKKKKKKKKKKKKKKKKKKKIMR 214
++KK + KKK K KK + ++
Sbjct: 153 AEKKKPRSKKKSSKNSKKLRIDLVG 177
Score = 27.7 bits (62), Expect = 4.3
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 147 GIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
I S PV+ R +K + K + K K KK+ K+ K+ K K
Sbjct: 183 AISPPDSSPVSLDAR------EKLRAYLPKWEGKTKNKKSLKEYKDLIKLLDSGK 231
Score = 27.0 bits (60), Expect = 8.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKK 195
+KKK + KKK +K KK +
Sbjct: 152 LAEKKKPRSKKKSSKNSKKLRID 174
>gnl|CDD|176075 cd08693, C2_PI3K_class_I_beta_delta, C2 domain present in class I
beta and delta phosphatidylinositol 3-kinases (PI3Ks).
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases)
regulate cell processes such as cell growth,
differentiation, proliferation, and motility. PI3Ks
work on phosphorylation of phosphatidylinositol,
phosphatidylinositide (4)P (PtdIns (4)P),2 or
PtdIns(4,5)P2. Specifically they phosphorylate the D3
hydroxyl group of phosphoinositol lipids on the inositol
ring. There are 3 classes of PI3Ks based on structure,
regulation, and specificity. All classes contain a C2
domain, a PIK domain, and a kinase catalytic domain.
The members here are class I, beta and delta isoforms of
PI3Ks and contain both a Ras-binding domain and a
p85-binding domain. Class II PI3Ks contain both of
these as well as a PX domain, and a C-terminal C2 domain
containing a nuclear localization signal. C2 domains
fold into an 8-standed beta-sandwich that can adopt 2
structural arrangements: Type I and Type II,
distinguished by a circular permutation involving their
N- and C-terminal beta strands. Many C2 domains are
Ca2+-dependent membrane-targeting modules that bind a
wide variety of substances including bind phospholipids,
inositol polyphosphates, and intracellular proteins.
Most C2 domain proteins are either signal transduction
enzymes that contain a single C2 domain, such as protein
kinase C, or membrane trafficking proteins which contain
at least two C2 domains, such as synaptotagmin 1.
However, there are a few exceptions to this including
RIM isoforms and some splice variants of piccolo/aczonin
and intersectin which only have a single C2 domain. C2
domains with a calcium binding region have negatively
charged residues, primarily aspartates, that serve as
ligands for calcium ions. Members have a type-I
topology.
Length = 173
Score = 28.4 bits (64), Expect = 2.0
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKK 194
E KK K K+ +KN+ KKK+KK
Sbjct: 84 EVSKKAKGKRSRKNQTKKKKKK 105
Score = 27.3 bits (61), Expect = 5.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 180 KKKKKKNKKKKKEKKKKKKKK 200
KK K K+ +K + KKKKKK
Sbjct: 85 VSKKAKGKRSRKNQTKKKKKK 105
Score = 26.9 bits (60), Expect = 6.1
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 193 KKKKKKKKKKKKKKKKKKKIM 213
KK K K+ +K + KKKKKK
Sbjct: 87 KKAKGKRSRKNQTKKKKKKDD 107
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 29.1 bits (65), Expect = 2.0
Identities = 13/56 (23%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 162 RRRKKEKKKKE--EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+RR+ EK KE E++++ +++++++ +K E + + K + +K+++K + +++K
Sbjct: 254 KRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQNLLKK 309
Score = 27.5 bits (61), Expect = 6.7
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
R+ ++E++ +EE + K +K + K + KEK K
Sbjct: 437 RKLQEERRLREEAIRAKAEKTARM-KAEMKEKTLKM 471
>gnl|CDD|234818 PRK00708, PRK00708, sec-independent translocase; Provisional.
Length = 209
Score = 28.6 bits (64), Expect = 2.0
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 5/55 (9%)
Query: 161 RRRRKKEKKKKEEKKKK-----KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ R K + + K KK KK K K KK KKKK K
Sbjct: 154 AKPRAKSPRPAAKAAPKPTETITAKKAKKTAAAPKPTADKTATPAKKTTKKKKTK 208
>gnl|CDD|234019 TIGR02800, propeller_TolB, tol-pal system beta propeller repeat
protein TolB. Members of this protein family are the
TolB periplasmic protein of Gram-negative bacteria. TolB
is part of the Tol-Pal (peptidoglycan-associated
lipoprotein) multiprotein complex, comprising five
envelope proteins, TolQ, TolR, TolA, TolB and Pal, which
form two complexes. The TolQ, TolR and TolA
inner-membrane proteins interact via their transmembrane
domains. The {beta}-propeller domain of the periplasmic
protein TolB is responsible for its interaction with
Pal. TolB also interacts with the outer-membrane
peptidoglycan-associated proteins Lpp and OmpA. TolA
undergoes a conformational change in response to changes
in the proton-motive force, and interacts with Pal in an
energy-dependent manner. The C-terminal periplasmic
domain of TolA also interacts with the N-terminal domain
of TolB. The Tol-PAL system is required for bacterial
outer membrane integrity. E. coli TolB is involved in
the tonB-independent uptake of group A colicins
(colicins A, E1, E2, E3 and K), and is necessary for the
colicins to reach their respective targets after initial
binding to the bacteria. It is also involved in uptake
of filamentous DNA. Study of its structure suggest that
the TolB protein might be involved in the recycling of
peptidoglycan or in its covalent linking with
lipoproteins. The Tol-Pal system is also implicated in
pathogenesis of E. coli, Haemophilus ducreyi ,
Salmonella enterica and Vibrio cholerae, but the
mechanism(s) is unclear [Transport and binding proteins,
Other, Cellular processes, Pathogenesis].
Length = 417
Score = 28.8 bits (65), Expect = 2.1
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 7 KARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGT 50
+A + GSV N Y VR +DV SGQ + G
Sbjct: 84 QALGADALVVGSVTPNGNGRYTVRFRLYDVV----SGQLQLLGK 123
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 28.6 bits (64), Expect = 2.1
Identities = 10/58 (17%), Positives = 33/58 (56%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ ++ +E+K E++ +K+ +++ + + + ++K + +++ K+KK+ KE
Sbjct: 103 DDQTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEKKEAEDKE 160
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 29.0 bits (65), Expect = 2.1
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ E+ K KK K+ + + KK K + ++K RK
Sbjct: 43 QSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSA 90
Score = 28.6 bits (64), Expect = 2.5
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ EK K +K K+ + +N KK + + ++K K +K
Sbjct: 43 QSEKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRK 88
Score = 28.2 bits (63), Expect = 4.0
Identities = 10/56 (17%), Positives = 22/56 (39%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ K KK +E + + KK+ K + ++K K +K + ++
Sbjct: 45 EKAKPPKKPKEASRPGTPRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKS 100
>gnl|CDD|232965 TIGR00414, serS, seryl-tRNA synthetase. This model represents the
seryl-tRNA synthetase found in most organisms. This
protein is a class II tRNA synthetase, and is recognized
by the pfam model tRNA-synt_2b. The seryl-tRNA
synthetases of two archaeal species, Methanococcus
jannaschii and Methanobacterium thermoautotrophicum,
differ considerably and are included in a different
model [Protein synthesis, tRNA aminoacylation].
Length = 418
Score = 28.9 bits (65), Expect = 2.1
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
Query: 162 RRRKKEKKKKEEKKKK-----KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
RKK + EE + K K+ K K KK K E+ KK+ K+ K++ +
Sbjct: 37 DERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSA 90
>gnl|CDD|219901 pfam08555, DUF1754, Eukaryotic family of unknown function
(DUF1754). This is a eukaryotic protein family of
unknown function.
Length = 90
Score = 27.4 bits (61), Expect = 2.1
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
K K KK + KKKKKKKKKK K++ +K++++K +
Sbjct: 11 KLKGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAE 49
Score = 26.6 bits (59), Expect = 4.0
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
K K+ KKKKKKKKKKNK K++ +K++++K +
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAE 49
Score = 25.8 bits (57), Expect = 7.0
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K KK KKKK KKKKK K K++ +K++++K + KE
Sbjct: 13 KGKKIDVKKKKKKKKKKNKSKEEVVTEKEEEEKSSAESDLKEG 55
>gnl|CDD|217010 pfam02387, IncFII_repA, IncFII RepA protein family. This protein
is plasmid encoded and found to be essential for plasmid
replication.
Length = 279
Score = 28.9 bits (65), Expect = 2.1
Identities = 13/66 (19%), Positives = 35/66 (53%), Gaps = 5/66 (7%)
Query: 158 NSHRRRRKK-EKKKKEEKKKK----KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
NS R+++ + E KK ++K + +++ K ++ + ++K KK+++ +K+
Sbjct: 169 NSARKQQLEWENKKLKKKGLIPLTLDEARRRAKEFHIERAFSYRTERKAFGKKRRRARKL 228
Query: 213 MRKEEN 218
+ +E
Sbjct: 229 AKLDEK 234
>gnl|CDD|218738 pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is
involved in recombination. Rap (recombination adept with
plasmid) increases lambda-by-plasmid recombination
catalyzed by Escherichia coli's RecBCD pathway.
Length = 188
Score = 28.5 bits (64), Expect = 2.1
Identities = 9/42 (21%), Positives = 25/42 (59%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
E K++K ++ K+K + + ++++ K +K+K K + ++
Sbjct: 29 ECALALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
Score = 27.7 bits (62), Expect = 3.4
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
K++K + KK+K E + ++++ K +K+K K + KE
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLKE 71
Score = 27.7 bits (62), Expect = 3.8
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K++K ++KK+ + + E+++ K +K+K K + K + N
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLKEAQAAVN 77
Score = 27.3 bits (61), Expect = 5.0
Identities = 10/38 (26%), Positives = 23/38 (60%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
K+E+ ++KK+K + + +++ K +K+K K + K
Sbjct: 33 ALKREKAQEKKRKAEAQAERRELKARKEKLKTRSDWLK 70
>gnl|CDD|202558 pfam03159, XRN_N, XRN 5'-3' exonuclease N-terminus. This family
aligns residues towards the N-terminus of several
proteins with multiple functions. The members of this
family all appear to possess 5'-3' exonuclease activity
EC:3.1.11.-. Thus, the aligned region may be necessary
for 5' to 3' exonuclease function. The family also
contains several Xrn1 and Xrn2 proteins. The 5'-3'
exoribonucleases Xrn1p and Xrn2p/Rat1p function in the
degradation and processing of several classes of RNA in
Saccharomyces cerevisiae. Xrn1p is the main enzyme
catalyzing cytoplasmic mRNA degradation in multiple
decay pathways, whereas Xrn2p/Rat1p functions in the
processing of rRNAs and small nucleolar RNAs (snoRNAs)
in the nucleus.
Length = 237
Score = 28.5 bits (64), Expect = 2.2
Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 158 NSHRRRR---KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
N R RR K+ K+KE + ++ +++ + + K ++ +K+K
Sbjct: 94 NQQRSRRFRAAKDAKEKEAEAEENREELETEGIKLPEKVEKEK 136
>gnl|CDD|187820 cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily
protein Cas7. CRISPR (Clustered Regularly Interspaced
Short Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas7 is a RAMP superfamily protein; Subunit of the
Cascade complex; also known as Csd2 family.
Length = 278
Score = 28.6 bits (64), Expect = 2.2
Identities = 10/43 (23%), Positives = 20/43 (46%)
Query: 148 IFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKK 190
IF+ + ++ + K+ K E KK+ + KK + +K
Sbjct: 56 IFVQEKARLNDTIKSLYKRLDIKLEPKKEGRAKKASVEEFRKW 98
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 29.2 bits (65), Expect = 2.2
Identities = 31/154 (20%), Positives = 56/154 (36%), Gaps = 16/154 (10%)
Query: 74 EPIKCNDIIRLTHTTTNKNLHS--HHFSSPLSGAQEVSAYLSATRQTYG----------- 120
PIK ND + K H+ SS +S + ++ S+ Y
Sbjct: 100 TPIKNNDNVTTPIKANKKEKHNLDSSSSSSISSSLTNISFFSSPTSIYSCLSNSLSSKHS 159
Query: 121 --RPISGQYEIVTVSWPDHNPVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKK 178
Q V +S D++P + ++ + + ++ + K
Sbjct: 160 PKVIKENQSTHVNIS-SDNSPRNKEISNKQLKKQTNVTHTTCYDKMRRSPRNTSTIKNNT 218
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K K+KNK+K K KK + K+ K+ +K K+
Sbjct: 219 NDKNKEKNKEKDKNIKKDRDGDKQTKRNSEKSKV 252
>gnl|CDD|221712 pfam12687, DUF3801, Protein of unknown function (DUF3801). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 158 and 187 amino
acids in length. This family includes the PcfB protein.
Length = 137
Score = 28.0 bits (63), Expect = 2.3
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K+ KK +K++ +K +KK KK K+E+ KKK++K K K KKK
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 27.6 bits (62), Expect = 2.9
Identities = 19/45 (42%), Positives = 29/45 (64%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+ +K KKE+ +K +KK KK K+++ KKK++K K K KKK
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
Score = 27.2 bits (61), Expect = 4.1
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
KE K+ KK++ +K +K KK KE++ KKK++K K K KKK
Sbjct: 93 KEFTAKKLKKEQDEKPSVRKKLKKFKEEQAAKKKERKDKVKNKKK 137
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 29.1 bits (65), Expect = 2.3
Identities = 18/89 (20%), Positives = 37/89 (41%), Gaps = 5/89 (5%)
Query: 124 SGQYEIVTVSWPDHNPVLW-KTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKK 182
+ +I + + LW ++GI + K E KK+ KK +KK K
Sbjct: 81 NESLKIEVYNKQFKHEQLWNSQVKGILTLGKKTNDDLE----KIESKKESINKKNEKKIK 136
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + + K ++++K++K + K
Sbjct: 137 NEASLQVKTQREEKEEKDFIADCWRNLYK 165
>gnl|CDD|233160 TIGR00869, sec62, protein translocation protein, Sec62 family.
Members of the NSCC2 family have been sequenced from
various yeast, fungal and animals species including
Saccharomyces cerevisiae, Drosophila melanogaster and
Homo sapiens. These proteins are the Sec62 proteins,
believed to be associated with the Sec61 and Sec63
constituents of the general protein secretary systems of
yeast microsomes. They are also the non-selective cation
(NS) channels of the mammalian cytoplasmic membrane. The
yeast Sec62 protein has been shown to be essential for
cell growth. The mammalian NS channel proteins has been
implicated in platelet derived growth factor(PGDF)
dependent single channel current in fibroblasts. These
channels are essentially closed in serum deprived
tissue-culture cells and are specifically opened by
exposure to PDGF. These channels are reported to exhibit
equal selectivity for Na+, K+ and Cs+ with low
permeability to Ca2+, and no permeability to anions
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 232
Score = 28.3 bits (63), Expect = 2.3
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKK 202
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
Score = 28.0 bits (62), Expect = 3.7
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 186 NKKKKKEKKKKKKKKKKKKKKKK 208
K K KKK K KK KKK+ K+
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKR 229
Score = 27.2 bits (60), Expect = 5.8
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKK 189
EK K KKK K KK KKK K+
Sbjct: 207 EKDKYSYKKKLKSKKLKKKQAKR 229
Score = 26.8 bits (59), Expect = 8.7
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 129 IVTVSWPDHNPVLW---KTMEGI-FIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKK 184
+ ++ P +W + F+ P+ H + + KKK + KK KKK+ K++
Sbjct: 171 LFVLTLIVVKPGIWIFPNLFADVGFLDSFKPLWGWHEKDKYSYKKKLKSKKLKKKQAKRE 230
Query: 185 KN 186
N
Sbjct: 231 AN 232
Score = 26.8 bits (59), Expect = 9.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Query: 188 KKKKEKKKKKKKKKKKKKKKKK 209
K K KKK K KK KKK+ K+
Sbjct: 208 KDKYSYKKKLKSKKLKKKQAKR 229
>gnl|CDD|221654 pfam12589, WBS_methylT, Methyltransferase involved in
Williams-Beuren syndrome. This domain family is found
in eukaryotes, and is typically between 72 and 83 amino
acids in length. The family is found in association with
pfam08241. This family is made up of
S-adenosylmethionine-dependent methyltransferases. The
proteins are deleted in Williams-Beuren syndrome (WBS),
a complex developmental disorder with multisystemic
manifestations including supravalvular aortic stenosis
(SVAS) and a specific cognitive phenotype.
Length = 85
Score = 27.3 bits (61), Expect = 2.3
Identities = 16/41 (39%), Positives = 29/41 (70%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K ++ ++ ++KKKKKKK KKK KE +KK++ +++ K+
Sbjct: 30 SKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKE 70
Score = 27.3 bits (61), Expect = 2.4
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNK---KKKKEKKKKKKKK 200
+ + ++ +KKKKKKK KKK+K +KKE+ +++ K+
Sbjct: 24 DEQIDASKVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRRRGKE 70
Score = 26.5 bits (59), Expect = 3.9
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 186 NKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ ++ ++KKKKKKK KKK K+ I+RK+E
Sbjct: 31 KVRRISQRNRRKKKKKKKLKKKSKEWILRKKE 62
Score = 25.7 bits (57), Expect = 8.6
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K ++ + ++K+KKKKK KKK K+ +KK+ MR+
Sbjct: 31 KVRRISQRNRRKKKKKKKLKKKSKEWILRKKEQMRR 66
>gnl|CDD|216447 pfam01346, FKBP_N, Domain amino terminal to FKBP-type
peptidyl-prolyl isomerase. This family is only found at
the amino terminus of pfam00254. This domain is of
unknown function.
Length = 124
Score = 27.6 bits (62), Expect = 2.4
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
KK + K++ K +KK ++NK + + KK+
Sbjct: 79 KKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
Score = 27.2 bits (61), Expect = 3.4
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
KK + K++ K +KK ++ K + E KK+
Sbjct: 79 KKLQAKQQAKAEKKAEENKAAGEAFLAENAKKE 111
>gnl|CDD|223625 COG0551, TopA, Zn-finger domain associated with topoisomerase type
I [DNA replication, recombination, and repair].
Length = 140
Score = 27.9 bits (62), Expect = 2.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ EK K K+KK K +K EKK+KKK + K + +N
Sbjct: 92 RFTEKPKPKEKKCPKCGSRKLVEKKEKKKGVFLECSNKPCCLKVENLKN 140
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 28.6 bits (65), Expect = 2.5
Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 165 KKEKKKKEE-----KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
E + E+ K K+ KK +K ++KK E + + KK K ++K K+++
Sbjct: 211 ADESELPEKVLEKFKALAKQYKKLRKAQEKKVEGRLAQHKKYAKLREKLKEELK 264
>gnl|CDD|227376 COG5043, MRS6, Vacuolar protein sorting-associated protein
[Intracellular trafficking and secretion].
Length = 2552
Score = 29.1 bits (65), Expect = 2.5
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKK--KKKKKKKKNKKKKKEKKKK-KKKKKKKKKKKKKK 210
D + K K++ E ++ K +KK N++ + K+ +K++ K +
Sbjct: 337 DSIHEKRYHWTWKYFKERCEDRRAYMKIIRKKYLNEQLSADLSKELEKRELTYDLIKYRS 396
Query: 211 KIMR 214
++ R
Sbjct: 397 RLFR 400
>gnl|CDD|233034 TIGR00584, mug, mismatch-specific thymine-DNA glycosylate (mug).
All proteins in this family for whcih functions are
known are G-T or G-U mismatch glycosylases that function
in base excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University). Used 2pf model [DNA metabolism,
DNA replication, recombination, and repair].
Length = 328
Score = 28.5 bits (63), Expect = 2.6
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKK--KKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
P+ + + RK++ + E + + KK KK+ K K K+K++K K K K+K
Sbjct: 48 PTQEPSEEAPKFRKRKPRSNEPYRPVEPKKPSDSKKSGKSTKSKEKQEKITDKFKVKRKV 107
Query: 210 KKIMRKEEN 218
+ E
Sbjct: 108 DRFNGVSEA 116
>gnl|CDD|217011 pfam02388, FemAB, FemAB family. The femAB operon codes for two
nearly identical approximately 50-kDa proteins involved
in the formation of the Staphylococcal pentaglycine
interpeptide bridge in peptidoglycan. These proteins are
also considered as a factor influencing the level of
methicillin resistance.
Length = 408
Score = 28.8 bits (65), Expect = 2.6
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+A + + E ++K EK +K K ++K +K KKK K + +++ +K+I
Sbjct: 234 MLAYLNFKEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRI 291
Score = 28.4 bits (64), Expect = 2.9
Identities = 13/69 (18%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
Query: 149 FIHPSDPVANSHRRRRKKEKK-----KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+++ + + + K EK +K EK KKK K +++ +K+ + K+
Sbjct: 237 YLNFKEYLDELQEKLEKLEKDLAKLEEKLEKNPNSKKKNKLAELEQQLASLEKRIDEAKE 296
Query: 204 KKKKKKKKI 212
K ++
Sbjct: 297 LIAKYGNEV 305
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 28.6 bits (65), Expect = 2.6
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK 195
R E++ K++ + K+ +K+KK +K
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 27.8 bits (63), Expect = 4.4
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
++E K++ + + ++KEKK +K
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 27.8 bits (63), Expect = 4.7
Identities = 7/31 (22%), Positives = 19/31 (61%)
Query: 182 KKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+++ K++ + K+ ++K+KK +K +I
Sbjct: 513 EEEIAYIKEQMEGSAPKEPEEKEKKPEKPEI 543
Score = 27.8 bits (63), Expect = 5.2
Identities = 6/33 (18%), Positives = 19/33 (57%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+ + +++ K++ + K+ ++K+KK +K
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 27.1 bits (61), Expect = 7.7
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+ +++ K++ KE ++K+KK +K
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
Score = 27.1 bits (61), Expect = 9.0
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+ E++ K++ + + K+ E+K+KK +K
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKP 541
>gnl|CDD|223087 COG0008, GlnS, Glutamyl- and glutaminyl-tRNA synthetases
[Translation, ribosomal structure and biogenesis].
Length = 472
Score = 28.8 bits (65), Expect = 2.7
Identities = 8/50 (16%), Positives = 13/50 (26%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
R K + +K + KE K + K K+
Sbjct: 385 RLKRLANVIVAEVLEKDAEGLITSDWTKENIIHWVKAVARLFGVKGPKLF 434
>gnl|CDD|234533 TIGR04285, nucleoid_noc, nucleoid occlusion protein. This model
describes nucleoid occlusion protein, a close homolog to
ParB chromosome partitioning proteins including Spo0J in
Bacillus subtilis. Its gene often is located near the
gene for the Spo0J ortholog. This protein bind a
specific DNA sequence and blocks cytokinesis from
happening until chromosome segregation is complete.
Length = 255
Score = 28.2 bits (64), Expect = 2.7
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 170 KKEEKKKK--KKKKKKKKNKKKKKE--KKKKKKKKKKKKKKKKKKKIMR 214
EE + + + +K N K+ +E KK +K +K KKKKK++K +
Sbjct: 165 PDEELQLEVLNEIIEKGLNVKQTEELIKKLLEKPEKPKKKKKRRKGFSK 213
>gnl|CDD|240370 PTZ00342, PTZ00342, acyl-CoA synthetase; Provisional.
Length = 746
Score = 28.5 bits (64), Expect = 2.7
Identities = 15/53 (28%), Positives = 21/53 (39%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
N K KEE+K + + E K+K +K K K+K KK
Sbjct: 225 NGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEKIKDLKEKAKK 277
Score = 28.5 bits (64), Expect = 2.8
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK-----KKKKKK 208
D + S KE+K K K+ +K + + K+K +K
Sbjct: 208 DTLIKSKEININKEEKNNGSNVNNNGNKNNKEEQKGNDLSNELEDISLGPLEYDKEKLEK 267
Query: 209 KKKIMRKEEN 218
K + K +
Sbjct: 268 IKDLKEKAKK 277
>gnl|CDD|187861 cd09730, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Large proteins, some contain Zn-finger domain; signature
gene for I-A subtype; also known as TM1802 family.
Length = 579
Score = 28.5 bits (64), Expect = 2.8
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K E KK KK +K + +K+ K K K +K +KI++ ++
Sbjct: 91 KTTEPLNKKIKKWFEKSYLLLESKKEILKLKNIKDVLEKNIEKILKDIQD 140
>gnl|CDD|235461 PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.
Length = 425
Score = 28.5 bits (65), Expect = 2.8
Identities = 8/56 (14%), Positives = 28/56 (50%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++E + + E+ + ++ K+ + K++ + + + K+ K++ K + E +
Sbjct: 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELD 90
Score = 28.1 bits (64), Expect = 3.9
Identities = 9/51 (17%), Positives = 26/51 (50%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
R++ + + EE + ++ K+ + K+K + + + K+ K++ K +
Sbjct: 35 EERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKAL 85
>gnl|CDD|218332 pfam04929, Herpes_DNAp_acc, Herpes DNA replication accessory
factor. Replicative DNA polymerases are capable of
polymerising tens of thousands of nucleotides without
dissociating from their DNA templates. The high
processivity of these polymerases is dependent upon
accessory proteins that bind to the catalytic subunit of
the polymerase or to the substrate. The Epstein-Barr
virus (EBV) BMRF1 protein is an essential component of
the viral DNA polymerase and is absolutely required for
lytic virus replication. BMRF1 is also a transactivator.
This family is predicted to have a UL42 like structure.
Length = 381
Score = 28.5 bits (64), Expect = 2.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKK 179
P+A S +R+R+ +KK+K++K KK K
Sbjct: 347 FERPLALSPKRKREGDKKQKKKKSKKLK 374
Score = 28.5 bits (64), Expect = 3.2
Identities = 12/19 (63%), Positives = 15/19 (78%)
Query: 188 KKKKEKKKKKKKKKKKKKK 206
K+K+E KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
Score = 28.1 bits (63), Expect = 3.9
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 192 EKKKKKKKKKKKKKKKKKKKI 212
K+K++ KK+KKKK KK K+
Sbjct: 355 PKRKREGDKKQKKKKSKKLKL 375
Score = 26.9 bits (60), Expect = 9.1
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 186 NKKKKKEKKKKKKKKKKKK 204
+K++ +KK+KKKK KK K
Sbjct: 356 KRKREGDKKQKKKKSKKLK 374
>gnl|CDD|215590 PLN03123, PLN03123, poly [ADP-ribose] polymerase; Provisional.
Length = 981
Score = 28.6 bits (64), Expect = 2.9
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
E++K+E KK K+KK + K KK K + +KK + K E
Sbjct: 195 AEERKQESKKGAKRKKDASGDDKSKKAKTDRDVSTSTAASQKKSSDLESKLE 246
>gnl|CDD|234298 TIGR03659, IsdE, heme ABC transporter, heme-binding protein isdE.
This family of ABC substrate-binding proteins is
observed primarily in close proximity with proteins
localized to the cell wall and bearing the NEAT (NEAr
Transporter, pfam05031) heme-binding domain. IsdE has
been shown to bind heme and is involved in the process
of scavenging heme for the purpose of obtaining iron.
Length = 289
Score = 28.4 bits (64), Expect = 3.0
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
KK + +K ++++ +K KE +K+ + KKK K KKK K++
Sbjct: 128 KKSITELGEKYGREEQAEKLVKEINEKEAEVKKKVKGKKKPKVL 171
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 28.5 bits (64), Expect = 3.0
Identities = 11/59 (18%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 163 RRKKEKKKKEEKKKKKKKK----KKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ K +K+ E KK++ ++ + + E + KK++ + + + +++ RK E
Sbjct: 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
Score = 27.3 bits (61), Expect = 8.6
Identities = 7/45 (15%), Positives = 30/45 (66%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+EK+++ ++ ++++ K ++ + K+K++ + + K+K+ + ++
Sbjct: 194 DEKRQQLERLRREREKAERYQALLKEKREYEGYELLKEKEALERQ 238
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of 70kDa
MW N terminal. This domain is found in eukaryotes. This
domain is about 90 amino acids in length. This domain is
found associated with pfam00076. This domain is part of
U1 snRNP, which is the pre-mRNA binding protein of the
penta-snRNP spliceosome complex. It extends over a
distance of 180 A from its RNA binding domain, wraps
around the core domain of U1 snRNP consisting of the
seven Sm proteins and finally contacts U1-C, which is
crucial for 5'-splice-site recognition.
Length = 94
Score = 26.8 bits (60), Expect = 3.1
Identities = 10/39 (25%), Positives = 25/39 (64%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K + + + +K+E++K++KK+K +KK +++ K
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELK 86
Score = 26.5 bits (59), Expect = 5.4
Identities = 10/26 (38%), Positives = 21/26 (80%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKK 196
EK++++K++KK+K +KK +E+ K+
Sbjct: 62 WLEKREREKREKKEKLEKKLEEELKE 87
>gnl|CDD|215124 PLN02195, PLN02195, cellulose synthase A.
Length = 977
Score = 28.4 bits (63), Expect = 3.1
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEK 193
K + E K KK KKKK KKK+ K
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHK 139
Score = 27.2 bits (60), Expect = 7.6
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 185 KNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
KN+ + + KK KKKK KKK+ K +I
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQI 142
Score = 27.2 bits (60), Expect = 8.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
K + + K KK +KKK KKK+ K + ++ M
Sbjct: 115 KNRVESWKDKKNKKKKSAKKKEAHKAQIPPEQQM 148
>gnl|CDD|240309 PTZ00189, PTZ00189, 60S ribosomal protein L21; Provisional.
Length = 160
Score = 27.7 bits (62), Expect = 3.1
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKK 205
K+ N K E KKK + K++
Sbjct: 106 LKRVAANDAIKAEAKKKGELPSTKRQ 131
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 27.9 bits (62), Expect = 3.2
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E KK KKKK +KKK KK KKKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
Score = 27.5 bits (61), Expect = 4.9
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ KK KKKK +KK+ KK KKKKK+K++ + ++
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDS 88
Score = 26.7 bits (59), Expect = 7.2
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E KK KKKK +KKK KK KKKKK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSE 89
Score = 26.7 bits (59), Expect = 8.4
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ KK KKKK KKK +K KKKKK+K++ + +++ EEN
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEEN 91
Score = 26.3 bits (58), Expect = 9.6
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
+ KK KKKK +KKK KK KK+KK+K++ + +
Sbjct: 44 EIPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAE 83
>gnl|CDD|240256 PTZ00071, PTZ00071, 40S ribosomal protein S24; Provisional.
Length = 132
Score = 27.3 bits (61), Expect = 3.2
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
+R R KKK K +K +K+ KN++KK K+K K KKK
Sbjct: 91 YRLIRLGLIKKK---KAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 27.3 bits (61), Expect = 3.8
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
KKKK +K +K+ K ++KK + K+K K KKK
Sbjct: 100 KKKKAGRKARKELKNRRKKVRGKEKTKVSGKKK 132
Score = 26.1 bits (58), Expect = 8.6
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 170 KKEEKKKKKKK----KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KK E K + + KKKK +K +KE K ++KK + K+K K K
Sbjct: 85 KKFEPKYRLIRLGLIKKKKAGRKARKELKNRRKKVRGKEKTKVSGK 130
>gnl|CDD|147641 pfam05582, Peptidase_U57, YabG peptidase U57. YabG is a protease
involved in the proteolysis and maturation of SpoIVA and
YrbA proteins, conserved with the cortex and/or coat
assembly by Bacillus subtilis.
Length = 287
Score = 28.3 bits (64), Expect = 3.2
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
S R KK ++K + K ++ +K ++K++ + + +
Sbjct: 56 SEVTRYKKRFEEKINESLKLIRQDRKLMREKQEYRATRGYNEN 98
>gnl|CDD|233294 TIGR01159, DRP1, density-regulated protein DRP1. This protein
family shows weak but suggestive similarity to
translation initiation factor SUI1 and its prokaryotic
homologs.
Length = 173
Score = 27.9 bits (62), Expect = 3.3
Identities = 13/44 (29%), Positives = 27/44 (61%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
++EK +K+ +K ++ ++ KKKKK +K K++ + K+K
Sbjct: 59 AQEEKGEKDLLGIQKAQEAREGGKKKKKLPQKVTIKREPRTKRK 102
Score = 27.9 bits (62), Expect = 3.5
Identities = 14/60 (23%), Positives = 30/60 (50%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
P A + + +++K EK +K ++ + KK+KK +K K++ + K+K +
Sbjct: 45 DSPTAEAEAVTIGEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQKVTIKREPRTKRKFV 104
Score = 27.2 bits (60), Expect = 6.1
Identities = 10/45 (22%), Positives = 24/45 (53%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
E + +++K + +K ++ ++ KKKKK +K +++E
Sbjct: 52 EAVTIGEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQKVTIKRE 96
Score = 26.8 bits (59), Expect = 7.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
+ +++K +K +K +E ++ KKKKK +K K+ R
Sbjct: 55 TIGEAQEEKGEKDLLGIQKAQEAREGGKKKKKLPQKVTIKREPR 98
>gnl|CDD|222812 PHA00727, PHA00727, hypothetical protein.
Length = 278
Score = 28.3 bits (63), Expect = 3.3
Identities = 16/50 (32%), Positives = 31/50 (62%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K K+ + +K++ + KK+ ++ K + KKKKK KK+K + K+++K
Sbjct: 38 KTLKRLYKVYEKREFELKKQQFEQLKAELSKKKKKFKKEKVDVRVKVVKK 87
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 27.8 bits (62), Expect = 3.3
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+ KKK+ +K KK KKK K+K +++KK ++
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 27.0 bits (60), Expect = 6.9
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 150 IHPSD---PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
I P D P +++R +K KK KKK K+K +++KK + K
Sbjct: 38 IFPEDIEIPSPKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDK 89
Score = 26.6 bits (59), Expect = 8.6
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++ +KK+ +K KK KK K+K +++KK + K ++ + EE+
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEES 103
Score = 26.6 bits (59), Expect = 9.8
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K+ KKK+ +K KK KKK K+K +++KK
Sbjct: 48 PKQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKK 82
>gnl|CDD|216016 pfam00602, Flu_PB1, Influenza RNA-dependent RNA polymerase subunit
PB1. Two GTP binding sites exist in this protein.
Length = 740
Score = 28.3 bits (63), Expect = 3.4
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
K + K K KN K++ + K+ K K+K+ K+K +I R+E
Sbjct: 177 KPEVKFTKHKNNKRRYDDKETGKLLKRKQPSKEKDRITREE 217
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 28.5 bits (64), Expect = 3.5
Identities = 12/52 (23%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK-KKKKKKIMRKE 216
KEK+++ K +++ + ++K+ EK+ + + +++K++ +KK ++ +R+E
Sbjct: 195 KEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQE 246
Score = 28.1 bits (63), Expect = 3.8
Identities = 9/59 (15%), Positives = 33/59 (55%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ ++E ++ ++K+++ K ++ + E K+ +K+ + + +++K+ +RK+
Sbjct: 180 AELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKK 238
Score = 27.3 bits (61), Expect = 7.5
Identities = 8/55 (14%), Positives = 33/55 (60%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++ ++ +EK+++ K +++ + + K+ +K+ + + +++K+++ +K E
Sbjct: 187 EEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEE 241
>gnl|CDD|179392 PRK02249, PRK02249, DNA primase large subunit; Validated.
Length = 343
Score = 28.0 bits (63), Expect = 3.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 163 RRKKEKKKKEEKKKKKKKKK 182
RRK K KEEK+ ++++K
Sbjct: 324 RRKLRDKDKEEKEDWREEEK 343
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 28.0 bits (62), Expect = 3.8
Identities = 16/57 (28%), Positives = 32/57 (56%)
Query: 148 IFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
+F D + R R ++K EE+ K+K +++K++ K +E+ KK+ + KK+
Sbjct: 40 VFTRKKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRN 96
Score = 27.2 bits (60), Expect = 7.2
Identities = 13/55 (23%), Positives = 35/55 (63%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
RKK++ +E++++ K+K + + K+K +++K++ K +++ KK+ ++K
Sbjct: 43 RKKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEEEVKKELELKKRNT 97
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 28.1 bits (63), Expect = 3.8
Identities = 12/65 (18%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK---KKKKKKKKKKKKKKKKI 212
+ + ++ E+ K+E ++ +K+ + + +K+K +EK + ++ ++ KK+ ++ ++K+
Sbjct: 223 LEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV 282
Query: 213 MRKEE 217
+E
Sbjct: 283 KELKE 287
Score = 28.1 bits (63), Expect = 4.3
Identities = 12/58 (20%), Positives = 33/58 (56%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+R + E++ + ++ K KK++ ++ KK+ +K +K+ ++ +K K++I +
Sbjct: 352 KRLEELEERHELYEEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISK 409
Score = 28.1 bits (63), Expect = 4.6
Identities = 11/57 (19%), Positives = 35/57 (61%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R++ +K ++E K+ ++ K++ + +K+ E + K+K ++K ++ +++I ++
Sbjct: 217 PELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKK 273
Score = 28.1 bits (63), Expect = 4.9
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R ++ KK+ EE ++K K+ K+ K K ++ K + ++ + ++ +K++ R EE
Sbjct: 265 EERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEE 321
Score = 27.7 bits (62), Expect = 5.7
Identities = 13/62 (20%), Positives = 34/62 (54%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ + E K++ ++K ++ +++ + KK+ E+ ++K K+ K+ K+K ++ I
Sbjct: 240 IEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLS 299
Query: 216 EE 217
E
Sbjct: 300 EF 301
Score = 27.3 bits (61), Expect = 6.6
Identities = 11/47 (23%), Positives = 31/47 (65%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
EE+ K+ ++K+++ + KKK K+ +K+ ++ +++ + ++ K+E
Sbjct: 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEE 373
Score = 27.3 bits (61), Expect = 6.6
Identities = 14/54 (25%), Positives = 32/54 (59%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ + +EE +K +K+ K+ + K++ E+ +K+ + + K+K ++KI EE
Sbjct: 213 SSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEE 266
Score = 27.3 bits (61), Expect = 6.9
Identities = 14/57 (24%), Positives = 36/57 (63%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R KE ++KEE+ ++ KKK K+ K+ ++ +++ + ++ K KK++ +++ ++
Sbjct: 327 EERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLTG 383
Score = 27.3 bits (61), Expect = 7.7
Identities = 13/58 (22%), Positives = 34/58 (58%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
S +E+ +K EK+ K+ ++ K++ ++ +KE + + K+K ++K ++ + +E
Sbjct: 213 SSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEE 270
Score = 27.3 bits (61), Expect = 8.8
Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK-----KKKKKKKKKKKKKKK 211
N R K+ ++K+E ++ KKK K+ + + ++ E++ + K KK++ ++ KK+
Sbjct: 323 INGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKKRLT 382
Query: 212 IMRKEE 217
+ E+
Sbjct: 383 GLTPEK 388
Score = 27.0 bits (60), Expect = 9.3
Identities = 8/53 (15%), Positives = 31/53 (58%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ R++ + E + + ++ + ++++ +K +K K++ ++++K KK++
Sbjct: 661 YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKEL 713
>gnl|CDD|235219 PRK04098, PRK04098, sec-independent translocase; Provisional.
Length = 158
Score = 27.4 bits (61), Expect = 4.0
Identities = 10/41 (24%), Positives = 18/41 (43%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+E + K ++ ++ K+ K K K KK K+K
Sbjct: 118 NHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
Score = 27.0 bits (60), Expect = 5.7
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+K +E+ ++ K +E + K+ K K K K KE+
Sbjct: 108 KKSLEEDTIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
Score = 26.6 bits (59), Expect = 6.7
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
EE + K ++ + + KE K K K KK K+K
Sbjct: 115 TIPNHLNEEVSNETKLTQESSSDESPKEVKLATKNKTKKHDKEK 158
>gnl|CDD|223957 COG1026, COG1026, Predicted Zn-dependent peptidases,
insulinase-like [General function prediction only].
Length = 978
Score = 28.1 bits (63), Expect = 4.0
Identities = 8/44 (18%), Positives = 23/44 (52%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
++ +K+E + +K+ + +K K KK K+++ + ++
Sbjct: 463 EKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEE 506
Score = 27.3 bits (61), Expect = 7.6
Identities = 11/46 (23%), Positives = 27/46 (58%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
EK +KEE++ +K+ + ++ +K K KK K+++ + ++ +
Sbjct: 463 EKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKERQDQPDSEEDL 508
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 28.4 bits (64), Expect = 4.1
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+K +K +K K KKK+K++ ++ K+
Sbjct: 141 EKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKE 177
Score = 28.0 bits (63), Expect = 5.0
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
EK +K +K K KKK+K++ ++ K+
Sbjct: 141 EKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKE 177
>gnl|CDD|185768 cd09245, BRO1_UmRIM23-like, Protein-interacting, Bro1-like domain
of Ustilago maydis Rim23 (PalC), and related domains.
This family contains the Bro1-like domain of Ustilago
maydis Rim23 (also known as PalC), and related proteins.
It belongs to the BRO1_Alix_like superfamily which
includes the Bro1-like domains of mammalian Alix
(apoptosis-linked gene-2 interacting protein X),
His-Domain type N23 protein tyrosine phosphatase
(HD-PTP, also known as PTPN23), RhoA-binding proteins
Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as
PalA) from Saccharomyces cerevisiae, and related
domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23
interact with the ESCRT (Endosomal Sorting Complexes
Required for Transport) system. Rim20 and Rim23
participate in the response to the external pH via the
Rim101 pathway. Through its Bro1-like domain, Rim23
allows the interaction between the endosomal and plasma
membrane complexes. Bro1-like domains are
boomerang-shape, and part of the domain is a
tetratricopeptide repeat (TPR)-like structure.
Intermediates in the Rim101 pathway may play roles in
the pathogenesis of fungal corneal infection during
Candida albicans keratitis. This family lacks the
V-shaped (V) domain found in many members of the
BRO1_Alix_like superfamily.
Length = 413
Score = 28.1 bits (63), Expect = 4.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
KK+ E+ K K K KK KEK++ +K +K
Sbjct: 323 KKELEDLKSPSGVASKAKLKKSWKEKREDRKVEK 356
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 28.1 bits (63), Expect = 4.2
Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 152 PSDPVANSHRRRRKK--EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
PS + R ++ KKK EK ++K+K+ ++ + +E+K+ K ++ +KK +
Sbjct: 301 PSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLED 360
Query: 210 KKIM 213
+
Sbjct: 361 LEKR 364
>gnl|CDD|223898 COG0828, RpsU, Ribosomal protein S21 [Translation, ribosomal
structure and biogenesis].
Length = 67
Score = 26.1 bits (58), Expect = 4.2
Identities = 16/48 (33%), Positives = 32/48 (66%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
K+K EK+ ++ K+++ +K EK+K+KK +K+K K+ +K ++E
Sbjct: 20 KRKVEKEGILREMKEREFYEKPSEKRKRKKAAARKRKFKRLRKEQQRE 67
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 27.9 bits (61), Expect = 4.3
Identities = 15/54 (27%), Positives = 36/54 (66%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++E+K ++EK+K +K+ + N + K E++K+K +++K+K +++K+K
Sbjct: 153 QEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANK 206
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 28.1 bits (63), Expect = 4.5
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
K + + +K KEK ++K K K K++ + ++
Sbjct: 904 ELAFYDDLALNGGKLPENGTELVEKLAKEKSLREKNKDDWKAKEEVEAKLK 954
>gnl|CDD|188606 TIGR04091, LTA_dltB, D-alanyl-lipoteichoic acid biosynthesis
protein DltB. Members of this protein family are DltB,
part of a four-gene operon for D-alanyl-lipoteichoic
acid biosynthesis that is present in the vast majority
of low-GC Gram-positive organisms. This protein may be
involved in transport of D-alanine across the plasma
membrane [Cell envelope, Biosynthesis and degradation of
murein sacculus and peptidoglycan].
Length = 380
Score = 27.9 bits (63), Expect = 4.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 175 KKKKKKKKKKKNK 187
+K KK KK KKNK
Sbjct: 343 RKSKKYKKNKKNK 355
Score = 27.5 bits (62), Expect = 5.2
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 192 EKKKKKKKKKKKKK 205
++K KK KK KK K
Sbjct: 342 QRKSKKYKKNKKNK 355
Score = 27.5 bits (62), Expect = 5.7
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 178 KKKKKKKKNKKKK 190
+K KK KKNKK K
Sbjct: 343 RKSKKYKKNKKNK 355
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 28.1 bits (63), Expect = 4.5
Identities = 9/31 (29%), Positives = 24/31 (77%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKK 194
+++E+K+KE+K KK+ K++++ + + K ++
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEE 421
Score = 27.3 bits (61), Expect = 6.5
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 188 KKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+++EK+K+KK KK+ K++++ + E
Sbjct: 391 KEREEKEKEKKAKKEGKEERRIHFQNKSIEE 421
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 27.4 bits (61), Expect = 4.5
Identities = 7/47 (14%), Positives = 26/47 (55%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ ++ KEE+K+ + K+ +KE ++ +++ +++ ++ +
Sbjct: 60 AEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDEN 106
Score = 26.6 bits (59), Expect = 9.3
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ E++ KK ++ + ++ K+E+K+ + K+ K +K+ EE
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEE 93
>gnl|CDD|218435 pfam05104, Rib_recp_KP_reg, Ribosome receptor lysine/proline rich
region. This highly conserved region is found towards
the C-terminus of the transmembrane domain. The function
is unclear.
Length = 151
Score = 27.3 bits (60), Expect = 4.6
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++K+ K + +K+ KKKKEK +KK K KKK++K KI E N
Sbjct: 13 QRKESGKTQSQKSDKKKKEKVSEKKGKSKKKEEKPNGKIPEHEPN 57
>gnl|CDD|235222 PRK04125, PRK04125, murein hydrolase regulator LrgA; Provisional.
Length = 141
Score = 26.9 bits (60), Expect = 4.6
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNK 187
K EK+K+++K+KK K K ++ K
Sbjct: 119 KTEKEKEDKKEKKVKIKGRQHGK 141
Score = 26.5 bits (59), Expect = 7.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKK 210
K +KEK+ KK+KK K K ++ K
Sbjct: 118 GKTEKEKEDKKEKKVKIKGRQHGK 141
Score = 26.5 bits (59), Expect = 7.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKK 188
K +K+KE+KK+KK K K +++ K
Sbjct: 118 GKTEKEKEDKKEKKVKIKGRQHGK 141
Score = 26.5 bits (59), Expect = 8.2
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 184 KKNKKKKKEKKKKKKKKKKKKKKK 207
K +K+K++KK+KK K K ++ K
Sbjct: 118 GKTEKEKEDKKEKKVKIKGRQHGK 141
Score = 26.5 bits (59), Expect = 8.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKK 204
K +K K+ KKEKK K K ++ K
Sbjct: 118 GKTEKEKEDKKEKKVKIKGRQHGK 141
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is known
to localise at the desmosomes and is implicated in
anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines. A
common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 27.1 bits (60), Expect = 4.8
Identities = 13/67 (19%), Positives = 41/67 (61%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ S +RR + ++K EE++K+++++ +K+ ++ +E+++K+ + +K ++K + +K
Sbjct: 25 QEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEK 84
Query: 212 IMRKEEN 218
+
Sbjct: 85 LQETWHE 91
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 28.1 bits (63), Expect = 4.8
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 4/63 (6%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKK----EKKKKKKKKKKKKKKK 207
+ + N + + + + K + KK K K K K+ +K KKKKK +
Sbjct: 860 AEEEIQNINENKNEFVEFKNDPKKLNKLIIAKDVLIKLVISSDEIKQDEKTTKKKKKDLE 919
Query: 208 KKK 210
K
Sbjct: 920 KTD 922
>gnl|CDD|218550 pfam05311, Baculo_PP31, Baculovirus 33KDa late protein (PP31).
Autographa californica nuclear polyhedrosis virus
(AcMNPV) pp31 is a nuclear phosphoprotein that
accumulates in the virogenic stroma, which is the viral
replication centre in the infected-cell nucleus, binds
to DNA, and serves as a late expression factor.
Length = 267
Score = 27.7 bits (62), Expect = 4.8
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
++K+K KK KK KK+K+K+
Sbjct: 221 SSPSRKRKAPKKVAKKVAAAKKRKQKRSPPP 251
>gnl|CDD|218270 pfam04795, PAPA-1, PAPA-1-like conserved region. Family of
proteins with a conserved region found in PAPA-1, a
PAP-1 binding protein.
Length = 89
Score = 26.2 bits (58), Expect = 4.8
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
RR+ + EK+ +EEK + K KK+ ++KK+E K KK +KK ++K +
Sbjct: 12 RRKNQSEKRAEEEKMETINKLLKKQARRKKREDKIKKGDEKKAQEKAAR 60
>gnl|CDD|226138 COG3611, DnaB, Replication initiation/membrane attachment protein
[DNA replication, recombination, and repair].
Length = 417
Score = 27.7 bits (62), Expect = 4.8
Identities = 13/57 (22%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKK-KKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R+ KK+ K+K+ K N + KK ++++ K + K ++ K+ K++
Sbjct: 360 RKELALAKKQSSTTKRKENLPKWSNPEYKKTTSQEEQAKLEFIKLEELKRLENGKQK 416
Score = 27.4 bits (61), Expect = 6.3
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+KK K + K +K+KE KK+ K+K+ K E
Sbjct: 343 ARKKVKTAYEAIKENRKRKELALAKKQSSTTKRKENLPKWSNPEYK 388
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 28.0 bits (62), Expect = 4.9
Identities = 13/62 (20%), Positives = 25/62 (40%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
HP + K++ K +K K K+K K ++ K + KK++ ++K
Sbjct: 713 HPYKKGVPPKPAEKDSLSAPKKQTSKTASEKSSSKGKRKHKNDEEADKIESKKQRLEEKS 772
Query: 211 KI 212
Sbjct: 773 SS 774
>gnl|CDD|191868 pfam07839, CaM_binding, Plant calmodulin-binding domain. The
sequences featured in this family are found repeated in
a number of plant calmodulin-binding proteins, and are
thought to constitute the calmodulin-binding domains.
Binding of the proteins to calmodulin depends on the
presence of calcium ions. These proteins are thought to
be involved in various processes, such as plant defence
responses and stolonisation or tuberization.
Length = 115
Score = 26.6 bits (59), Expect = 5.1
Identities = 14/50 (28%), Positives = 26/50 (52%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+K+E++ K+E K +K+K K + KK K+ K +K +K +
Sbjct: 3 EKKEERRSKKEDPKPEKEKPKSWSNLKKVILLKRFVKSLEKVRKFNPRGP 52
Score = 26.2 bits (58), Expect = 7.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
RR KKE K E++K K KK K+ K +K +K +
Sbjct: 8 RRSKKEDPKPEKEKPKSWSNLKKVILLKRFVKSLEKVRKFNPRGP 52
>gnl|CDD|227818 COG5531, COG5531, SWIB-domain-containing proteins implicated in
chromatin remodeling [Chromatin structure and dynamics].
Length = 237
Score = 27.4 bits (61), Expect = 5.1
Identities = 9/53 (16%), Positives = 21/53 (39%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
R+ + +E+ K+ +N + ++ KKKK K + ++
Sbjct: 74 RKTTGKNDLPKEEDSSLPSSKETENGDTEGKETDKKKKSSTISKNSPSGEKVK 126
Score = 26.6 bits (59), Expect = 8.4
Identities = 11/50 (22%), Positives = 17/50 (34%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K K + K++ K + + K+ KKKK K K
Sbjct: 75 KTTGKNDLPKEEDSSLPSSKETENGDTEGKETDKKKKSSTISKNSPSGEK 124
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 27.9 bits (62), Expect = 5.4
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+E KK+K+K+K++ + +K E K K KKKK K
Sbjct: 448 EEVKKEKEKEKERPEFVEKVLELFKGSKIITYKKKKGK 485
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 27.4 bits (61), Expect = 5.4
Identities = 9/23 (39%), Positives = 18/23 (78%)
Query: 193 KKKKKKKKKKKKKKKKKKKIMRK 215
+KK+K+KK++ K +KK+ ++ K
Sbjct: 161 LRKKEKEKKEQLKIQKKQSLLEK 183
>gnl|CDD|153331 cd07647, F-BAR_PSTPIP, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Vetebrates contain two
Proline-Serine-Threonine Phosphatase-Interacting
Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are
mainly expressed in hematopoietic cells and are involved
in the regulation of cell adhesion and motility.
Mutations in PSTPIPs have been shown to cause
autoinflammatory disorders. PSTPIP1 contains an
N-terminal F-BAR domain, PEST motifs, and a C-terminal
SH3 domain, while PSTPIP2 contains only the N-terminal
F-BAR domain. F-BAR domains form banana-shaped dimers
with a positively-charged concave surface that binds to
negatively-charged lipid membranes. They can induce
membrane deformation in the form of long tubules.
Length = 239
Score = 27.4 bits (61), Expect = 5.5
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
R ++K+E+KK E+ K+ +K KK+ KK K KK ++K ++K K
Sbjct: 94 REKQKEERKKTEDIMKRSQKNKKELYKKTMKAKKSYEQKCREKDK 138
>gnl|CDD|218370 pfam04997, RNA_pol_Rpb1_1, RNA polymerase Rpb1, domain 1. RNA
polymerases catalyze the DNA dependent polymerisation of
RNA. Prokaryotes contain a single RNA polymerase
compared to three in eukaryotes (not including
mitochondrial. and chloroplast polymerases). This
domain, domain 1, represents the clamp domain, which a
mobile domain involved in positioning the DNA,
maintenance of the transcription bubble and positioning
of the nascent RNA strand.
Length = 330
Score = 27.6 bits (62), Expect = 5.5
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ K K K K K + KK KKK K +
Sbjct: 107 ESVKYFFLKVVIDPKGKNSKKRLKKINNLCKKKSICSKCGED 148
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 25.9 bits (57), Expect = 5.6
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
H+R KK+++K E + ++K +K K KK++ K++ K
Sbjct: 28 HQRSLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAK 67
>gnl|CDD|153294 cd07610, FCH_F-BAR, The Extended FES-CIP4 Homology (FCH) or F-BAR
(FCH and Bin/Amphiphysin/Rvs) domain, a dimerization
module that binds and bends membranes. F-BAR domains
are dimerization modules that bind and bend membranes
and are found in proteins involved in membrane dynamics
and actin reorganization. F-BAR domain containing
proteins, also known as Pombe Cdc15 homology (PCH)
family proteins, include Fes and Fer tyrosine kinases,
PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and
srGAPs. Many members also contain an SH3 domain and play
roles in endocytosis. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
These tubules have diameters larger than those observed
with N-BARs. The F-BAR domains of some members such as
NOSTRIN and Rgd1 are important for the subcellular
localization of the protein.
Length = 191
Score = 27.3 bits (61), Expect = 5.6
Identities = 13/59 (22%), Positives = 29/59 (49%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ + ++ EK K+ K++ +KK + ++ KKK ++ K KK ++ + E
Sbjct: 75 ELSEKLSQLIREPLEKVKEDKEQARKKELAEGEKLKKKLQELWAKLAKKADEEYREQVE 133
>gnl|CDD|234961 PRK01581, speE, spermidine synthase; Validated.
Length = 374
Score = 27.6 bits (61), Expect = 5.8
Identities = 10/48 (20%), Positives = 29/48 (60%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
KK+K+ + + K + +++ +NK+ K+ K+ K+ + + + K+ ++
Sbjct: 19 KKDKRSELDSNKFELEQQLVENKQDKQGKQYKQDRGIQYAETKQDNQV 66
>gnl|CDD|227507 COG5180, PBP1, Protein interacting with poly(A)-binding protein
[RNA processing and modification].
Length = 654
Score = 27.8 bits (61), Expect = 5.8
Identities = 9/59 (15%), Positives = 19/59 (32%)
Query: 150 IHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ + K + + + K + +EK+K+ K+KK K
Sbjct: 268 TKRKMVIEIEGLSLLENRKPEAVSAPEAVSPQSKSEGPSSGQEKEKQIKEKKSFSYGWK 326
>gnl|CDD|222918 PHA02687, PHA02687, ORF061 late transcription factor VLTF-4;
Provisional.
Length = 231
Score = 27.3 bits (60), Expect = 5.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
P PV RR +KK K K EK K +K + + K ++K+ ++ ++
Sbjct: 79 PPAPVKTPKRRTKKKAKADKPEKSPKAVEKLCPPDDRDDKNEEKEPTEEAQR 130
>gnl|CDD|225381 COG2825, HlpA, Outer membrane protein [Cell envelope biogenesis,
outer membrane].
Length = 170
Score = 27.0 bits (60), Expect = 5.9
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
++R+KE +K +++ K K+ K + K + + K + + KK+K
Sbjct: 53 FKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAKAEAEIKKEKL 98
Score = 27.0 bits (60), Expect = 6.2
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ KK E + KK++K+ +K K+ K ++ K + K + + K
Sbjct: 41 QAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQDDGKMEALSDRAK 88
>gnl|CDD|234776 PRK00478, scpA, segregation and condensation protein A/unknown
domain fusion protein; Provisional.
Length = 505
Score = 27.6 bits (61), Expect = 6.0
Identities = 9/36 (25%), Positives = 25/36 (69%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
+R++++++ +E K+ ++++ N +K++E KKK
Sbjct: 430 QRQQEQEQALKESIKQIQEERAISNFQKREEYLKKK 465
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 27.8 bits (62), Expect = 6.0
Identities = 9/62 (14%), Positives = 34/62 (54%), Gaps = 4/62 (6%)
Query: 161 RRRRKKEKKKKEEKKKKKKK----KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++ + ++ KEE + +++ + +K+ E+ +++ ++ +++ KK +++I + E
Sbjct: 385 KQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLE 444
Query: 217 EN 218
Sbjct: 445 SK 446
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 27.0 bits (60), Expect = 6.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+KKKK ++ K +K+ K+K +KKK I+ K
Sbjct: 2 RKKKKNRSSNYKVNRKRLKRKDRKKKINIIGNPIIAKN 39
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 27.3 bits (61), Expect = 6.2
Identities = 11/56 (19%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
Query: 165 KKEKKKKEEKKKK---KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KEK + E+ K + +++ + K+K++E+ + +++ ++ K+ + M E
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAER 256
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and
autophagy-related subunit 14. The Atg14 or Apg14
proteins are hydrophilic proteins with a predicted
molecular mass of 40.5 kDa, and have a coiled-coil motif
at the N terminus region. Yeast cells with mutant Atg14
are defective not only in autophagy but also in sorting
of carboxypeptidase Y (CPY), a vacuolar-soluble
hydrolase, to the vacuole. Subcellular fractionation
indicate that Apg14p and Apg6p are peripherally
associated with a membrane structure(s). Apg14p was
co-immunoprecipitated with Apg6p, suggesting that they
form a stable protein complex. These results imply that
Apg6/Vps30p has two distinct functions: in the
autophagic process and in the vacuolar protein sorting
pathway. Apg14p may be a component specifically required
for the function of Apg6/Vps30p through the autophagic
pathway. There are 17 auto-phagosomal component proteins
which are categorized into six functional units, one of
which is the AS-PI3K complex (Vps30/Atg6 and Atg14). The
AS-PI3K complex and the Atg2-Atg18 complex are essential
for nucleation, and the specific function of the AS-PI3K
apparently is to produce phosphatidylinositol
3-phosphate (PtdIns(3)P) at the pre-autophagosomal
structure (PAS). The localisation of this complex at the
PAS is controlled by Atg14. Autophagy mediates the
cellular response to nutrient deprivation, protein
aggregation, and pathogen invasion in humans, and
malfunction of autophagy has been implicated in multiple
human diseases including cancer. This effect seems to be
mediated through direct interaction of the human Atg14
with Beclin 1 in the human phosphatidylinositol 3-kinase
class III complex.
Length = 307
Score = 27.3 bits (61), Expect = 6.2
Identities = 7/56 (12%), Positives = 29/56 (51%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ + + E+K++ ++ K+ +++ + + +K++ + +K + + K+ K
Sbjct: 81 SQLKEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRASQLEKLQDEIKRTRSK 136
Score = 26.9 bits (60), Expect = 7.5
Identities = 5/53 (9%), Positives = 26/53 (49%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ R + + + + K++ ++K+++ + K+ +++ + +K++
Sbjct: 68 RKKERLNQIRARISQLKEEIEQKRERIEELKRALAQRRSDLSSASYQLEKRRA 120
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 27.2 bits (61), Expect = 6.3
Identities = 11/51 (21%), Positives = 32/51 (62%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ +EK ++EE+++ + +++++ + ++++K+K K K + K+K I
Sbjct: 13 VEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDI 63
Score = 27.2 bits (61), Expect = 6.6
Identities = 11/57 (19%), Positives = 37/57 (64%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ + K +K EEK +++++++ + +++++E+ +++KK+K K K +++++
Sbjct: 6 KEKLSKFVEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKD 62
>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive
type) [DNA replication, recombination, and repair].
Length = 1444
Score = 27.7 bits (62), Expect = 6.5
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+E +K ++ + +KK K ++ K +K K +K +K K ++ K + K
Sbjct: 178 KFEEAINEEVEKAAQEALEAEKKLKAESPKVEKPKPLFDGQKGRKIKSTEEIKPLIK 234
>gnl|CDD|189038 cd09868, PIN_XPG, PIN domain of Xeroderma pigmentosum
complementation group G (XPG) nuclease, a
structure-specific, divalent-metal-ion dependent, 5'
nuclease and homologs. The Xeroderma pigmentosum
complementation group G (XPG) nuclease plays a central
role in nucleotide excision repair (NER) in cleaving DNA
bubble structures or loops. XPG is a member of the
structure-specific, 5' nuclease family that catalyzes
hydrolysis of DNA duplex-containing nucleic acid
structures during DNA replication, repair, and
recombination. These nucleases contain a PIN (PilT N
terminus) domain with a helical arch/clamp region (I
domain). In XPG PIN domains, this arch region can be
quite variable and extensive (400 - 800 residues) in
length and is required for NER activity and for
efficient processing of bubble substrates. Inserted
within the PIN domain of these 5' nucleases is a H3TH
(helix-3-turn-helix) domain, an atypical
helix-hairpin-helix-2-like region. Both the H3TH domain
(not included here) and the helical arch/clamp region
are involved in DNA binding. Nucleases within this group
also have a carboxylate-rich active site that is
involved in binding essential divalent metal ion
cofactors (Mg2+/Mn2+).
Length = 249
Score = 27.2 bits (61), Expect = 6.6
Identities = 9/39 (23%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 161 RRRRKKEKKKKEEKKKKKK-KKKKKKNKKKKKEKKKKKK 198
+RR+++EK + KK +K + K K +++++++
Sbjct: 90 KRRQQREKAEINAKKTAEKLLASQLKKSAVKSQQQQQER 128
>gnl|CDD|203489 pfam06644, ATP11, ATP11 protein. This family consists of several
eukaryotic ATP11 proteins. In Saccharomyces cerevisiae,
expression of functional F1-ATPase requires two proteins
encoded by the ATP11 and ATP12 genes. Atp11p is a
molecular chaperone of the mitochondrial matrix that
participates in the biogenesis pathway to form F1, the
catalytic unit of the ATP synthase.
Length = 250
Score = 27.3 bits (61), Expect = 6.7
Identities = 18/50 (36%), Positives = 21/50 (42%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
R KK K K EKK+ KK K+ + K K K KKK K
Sbjct: 22 RLKKALKDKIEKKEFSAKKPPTGPSKQASKFKTLKPPKPADKKKPFDKPF 71
>gnl|CDD|233787 TIGR02223, ftsN, cell division protein FtsN. FtsN is a poorly
conserved protein active in cell division in a number of
Proteobacteria. The N-terminal 30 residue region tends
to by Lys/Arg-rich, and is followed by a
membrane-spanning region. This is followed by an acidic
low-complexity region of variable length and a
well-conserved C-terminal domain of two tandem regions
matched by pfam05036 (Sporulation related repeat), found
in several cell division and sporulation proteins. The
role of FtsN as a suppressor for other cell division
mutations is poorly understood; it may involve cell wall
hydrolysis [Cellular processes, Cell division].
Length = 298
Score = 27.4 bits (60), Expect = 6.7
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
A S + + +K+ EKK +K + + + + EK K K+ K+K+K K+
Sbjct: 137 ATAPSEQTVAVEARKQTAEKKPQKARTAEAQKTPVETEKIASKVKEAKQKQKALPKQTAE 196
Query: 215 KEEN 218
+ N
Sbjct: 197 TQSN 200
>gnl|CDD|240407 PTZ00412, PTZ00412, leucyl aminopeptidase; Provisional.
Length = 569
Score = 27.6 bits (61), Expect = 6.7
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
+ K K+K KK +N KK + +KK+ +++K+
Sbjct: 535 RHNKPPKRKGIKKAQNAKKDLKVVQKKRHGRRRKQ 569
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 26.8 bits (60), Expect = 6.7
Identities = 10/59 (16%), Positives = 36/59 (61%), Gaps = 3/59 (5%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK---KKKKKKKKKKKKIMRKEE 217
R+ + ++ K E +++ KK +++K + +K+ + + K +K+++++++ ++ +E
Sbjct: 113 RKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 27.5 bits (61), Expect = 6.8
Identities = 14/49 (28%), Positives = 28/49 (57%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + KK K KKK KK KK+ KE K +++ + + + K + ++++
Sbjct: 143 ETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDS 191
Score = 27.5 bits (61), Expect = 6.9
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
+ + KK + KKK KK KKK+ + K+ +++ + + + K
Sbjct: 139 ILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKS 183
>gnl|CDD|218611 pfam05499, DMAP1, DNA methyltransferase 1-associated protein 1
(DMAP1). DNA methylation can contribute to
transcriptional silencing through several
transcriptionally repressive complexes, which include
methyl-CpG binding domain proteins (MBDs) and histone
deacetylases (HDACs). The chief enzyme that maintains
mammalian DNA methylation, DNMT1, can also establish a
repressive transcription complex. The non-catalytic
amino terminus of DNMT1 binds to HDAC2 and DMAP1 (for
DNMT1 associated protein), and can mediate
transcriptional repression. DMAP1 has intrinsic
transcription repressive activity, and binds to the
transcriptional co-repressor TSG101. DMAP1 is targeted
to replication foci through interaction with the far N
terminus of DNMT1 throughout S phase, whereas HDAC2
joins DNMT1 and DMAP1 only during late S phase,
providing a platform for how histones may become
deacetylated in heterochromatin following replication.
Length = 175
Score = 26.7 bits (59), Expect = 6.8
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
RKKE++KK + +K ++ + +K++KK KKK +K +++
Sbjct: 15 RKKEREKKAQDLQKLITAADQQAAGFSTAEARKREKKLPKKKIPQKPGPSKEDS 68
>gnl|CDD|234547 TIGR04330, cas_Cpf1, CRISPR-associated protein Cpf1, subtype
PREFRAN. This family is the long protein of a novel
CRISPR subtype, PREFRAN, which is most common in
Prevotella and Francisella, although widely distributed.
The PREFRAN type has Cas1, Cas2, and Cas4, but lacks the
helicase Cas3 and endonuclease Cas3-HD.
Length = 1287
Score = 27.5 bits (61), Expect = 6.8
Identities = 15/34 (44%), Positives = 22/34 (64%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
EE KK+ + +K K+KK+K E+K KK KK+
Sbjct: 378 EEYIKKQIEPRKGKSKKEKYEEKVKKVVKKQDYL 411
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 27.3 bits (61), Expect = 7.0
Identities = 8/26 (30%), Positives = 20/26 (76%)
Query: 193 KKKKKKKKKKKKKKKKKKKIMRKEEN 218
+KKK++KK+++K+ K +R++++
Sbjct: 178 SSDSEKKKQRKKQRRKRSKELREDDD 203
Score = 26.9 bits (60), Expect = 9.4
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
EKKK++KK+++K+ K+ ++ E+
Sbjct: 177 HSSDSEKKKQRKKQRRKRSKELREDDDDDEDE 208
Score = 26.9 bits (60), Expect = 9.9
Identities = 8/33 (24%), Positives = 20/33 (60%)
Query: 186 NKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+KKK++KK+++K+ K+ ++ +E+
Sbjct: 175 PGHSSDSEKKKQRKKQRRKRSKELREDDDDDED 207
>gnl|CDD|219555 pfam07753, DUF1609, Protein of unknown function (DUF1609). This
region is found in a number of hypothetical proteins
thought to be expressed by the eukaryote Encephalitozoon
cuniculi, an obligate intracellular microsporidial
parasite. It is approximately 200 residues long.
Length = 230
Score = 27.1 bits (60), Expect = 7.0
Identities = 18/66 (27%), Positives = 33/66 (50%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
P + +A R +KK KKK + + K K+ + +K +K K++ K ++K K +
Sbjct: 11 PLEEMAVGGARAKKKGGKKKSKGGRHCYKIHKRVLRWRKSPEKIKEELDKGSEEKWKGRS 70
Query: 212 IMRKEE 217
I +E
Sbjct: 71 IEEIKE 76
>gnl|CDD|185464 PTZ00128, PTZ00128, cytochrome c oxidase assembly protein-like;
Provisional.
Length = 232
Score = 27.0 bits (60), Expect = 7.0
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 155 PVANSHRRR-RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
P R K E + K K K + KK KK++
Sbjct: 11 PTTTPPTSDNRGSSANKSELFRSFKHSKNSGKENELKKFKKERG 54
>gnl|CDD|217787 pfam03910, Adeno_PV, Adenovirus minor core protein PV.
Length = 336
Score = 27.1 bits (60), Expect = 7.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKN 186
R K E K ++ K+ KK+KK+++K+
Sbjct: 21 PRPVKDEAKPRKIKRVKKRKKREEKD 46
>gnl|CDD|222242 pfam13584, BatD, Oxygen tolerance. This family of proteins carries
up to three membrane spanning regions and is involved in
tolerance to oxygen in in Bacteroides spp.
Length = 488
Score = 27.2 bits (61), Expect = 7.3
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+K++ + KK NK KK K+ KK K
Sbjct: 450 RKRRARNADVAGNRTKKANKLAKKRLKEAKKALAGNKDA 488
Score = 27.2 bits (61), Expect = 7.9
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
RK+ + + + KK K K+ K+ KK K
Sbjct: 449 YRKRRARNADVAGNRTKKANKLAKKRLKEAKKALAGNKDA 488
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 26.3 bits (58), Expect = 7.4
Identities = 10/28 (35%), Positives = 20/28 (71%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKK 182
P A + +K ++K+EEKKK+++K++
Sbjct: 66 PAAAAAAAAEEKAEEKEEEKKKEEEKEE 93
>gnl|CDD|241398 cd13244, PH_PLEKHG5_G6, Pleckstrin homology domain-containing
family G member 5 and 6 pleckstrin homology (PH) domain.
PLEKHG5 has a RhoGEF DH/double-homology domain in
tandem with a PH domain which is involved in
phospholipid binding. PLEKHG5 activates the nuclear
factor kappa B (NFKB1) signaling pathway. Mutations in
PLEKHG5 are associated with autosomal recessive distal
spinal muscular atrophy. PLEKHG6 (also called MyoGEF)
has no known function to date. PH domains have diverse
functions, but in general are involved in targeting
proteins to the appropriate cellular location or in the
interaction with a binding partner. They share little
sequence conservation, but all have a common fold, which
is electrostatically polarized. Less than 10% of PH
domains bind phosphoinositide phosphates (PIPs) with
high affinity and specificity. PH domains are
distinguished from other PIP-binding domains by their
specific high-affinity binding to PIPs with two vicinal
phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2 or
PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 154
Score = 26.5 bits (59), Expect = 7.4
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 15/41 (36%)
Query: 189 KKKEKKKKK---------------KKKKKKKKKKKKKKIMR 214
K KE K K KKK+ +K +
Sbjct: 55 KLKEGKGSSVDVHCFLFTDMLLICKPVKKKEDRKVIRPPPL 95
>gnl|CDD|185575 PTZ00361, PTZ00361, 26 proteosome regulatory subunit 4-like
protein; Provisional.
Length = 438
Score = 27.0 bits (60), Expect = 7.9
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+K K KK +KKKKE + K+KKK+K
Sbjct: 10 NQKDKNKKKEKKKKESPPPPHEIKRKKKRKG 40
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 27.2 bits (61), Expect = 7.9
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+ K K+K+ K+KKKEKK+KK +
Sbjct: 373 DECGNKYKEKEAKEKKKEKKRKKTWAR 399
Score = 26.9 bits (60), Expect = 9.0
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 182 KKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ NK K+KE K+KKK+KK+KK +
Sbjct: 373 DECGNKYKEKEAKEKKKEKKRKKTWAR 399
>gnl|CDD|222911 PHA02616, PHA02616, VP2/VP3; Provisional.
Length = 259
Score = 26.9 bits (59), Expect = 7.9
Identities = 10/52 (19%), Positives = 22/52 (42%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+R++ + KK KK K K + KK++ + + ++ +I
Sbjct: 208 KRKQDELHPVSPTKKAALSKKSKWTGTKSSQSSKKRRGRSTGRSTTVRRNRI 259
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 26.5 bits (59), Expect = 8.0
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
E + EE+ ++ +++K+++ K +E + KKK+ +KKKK+K
Sbjct: 136 DEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 27.0 bits (60), Expect = 8.1
Identities = 8/58 (13%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK-KKKKKKKKIMRKEE 217
+RR+ +E K +E+ +++ ++ +++ E +++ +++ + +++ + KI +
Sbjct: 127 QRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAELERENIRAKIEAEAR 184
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 27.0 bits (60), Expect = 8.1
Identities = 9/56 (16%), Positives = 23/56 (41%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ K + +E KK + + +KK E+ + + + K + + + E
Sbjct: 197 QQAKLAQLLEERKKTLAQLNSELSADQKKLEELRANESRLKNEIASAEAAAAKARE 252
>gnl|CDD|221643 pfam12572, DUF3752, Protein of unknown function (DUF3752). This
domain family is found in eukaryotes, and is typically
between 140 and 163 amino acids in length.
Length = 148
Score = 26.6 bits (59), Expect = 8.1
Identities = 14/67 (20%), Positives = 35/67 (52%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ A + + ++ K+ +K K+ +KK+ ++ +KK+KKKKK+++ +
Sbjct: 53 VEAGASAPAAASAKASKRDKEMARKVKEYNEKKRGKSLVEQHQKKQKKKKKEEENDDPSR 112
Query: 211 KIMRKEE 217
+ +E+
Sbjct: 113 RPFDREK 119
>gnl|CDD|238288 cd00520, RRF, Ribosome recycling factor (RRF). Ribosome recycling
factor dissociates the posttermination complex, composed
of the ribosome, deacylated tRNA, and mRNA, after
termination of translation. Thus ribosomes are
"recycled" and ready for another round of protein
synthesis. RRF is believed to bind the ribosome at the
A-site in a manner that mimics tRNA, but the specific
mechanisms remain unclear. RRF is essential for
bacterial growth. It is not necessary for cell growth
in archaea or eukaryotes, but is found in mitochondria
or chloroplasts of some eukaryotic species.
Length = 179
Score = 26.5 bits (59), Expect = 8.2
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
VA + RR +K KK EK+K+ + + KK ++ ++ + KK + K K+K+++
Sbjct: 122 VAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTDEYIKKIDELLKSKEKELL 179
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 26.9 bits (60), Expect = 8.3
Identities = 7/40 (17%), Positives = 20/40 (50%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+E ++ + K+ K + EK + +++K + K++
Sbjct: 2 KELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEI 41
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 26.8 bits (60), Expect = 8.3
Identities = 13/61 (21%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKN----KKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
++ + + EK KKE ++ K++ + + KK ++E +++ + ++ K+ +K+ K ++
Sbjct: 65 NKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKA 124
Query: 216 E 216
E
Sbjct: 125 E 125
>gnl|CDD|193409 pfam12936, Kri1_C, KRI1-like family C-terminal. The yeast member
of this family (Kri1p) is found to be required for 40S
ribosome biogenesis in the nucleolus. This is the
C-terminal domain of the family.
Length = 93
Score = 25.6 bits (57), Expect = 8.3
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKK 194
K+E +K KKK KK + ++ KK+
Sbjct: 69 KEERRKDKKKYGKKARLREWKKKVF 93
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 26.1 bits (58), Expect = 8.7
Identities = 12/31 (38%), Positives = 23/31 (74%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKK 191
+R R +EKK EE+ K++ ++ K++ ++KKK
Sbjct: 96 QRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
>gnl|CDD|235395 PRK05298, PRK05298, excinuclease ABC subunit B; Provisional.
Length = 652
Score = 26.9 bits (61), Expect = 8.8
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
RRR + +E K KKK ++ KK K KK+ +K K+ +K M++
Sbjct: 570 RRREIQIAYNEEHGITPKTIKKKIRDILDSVYKKDKLSKKELEKLIKELEKQMKE 624
>gnl|CDD|148511 pfam06936, Selenoprotein_S, Selenoprotein S (SelS). This family
consists of several mammalian selenoprotein S (SelS)
sequences. SelS is a plasma membrane protein and is
present in a variety of tissues and cell types. The
function of this family is unknown.
Length = 190
Score = 26.8 bits (59), Expect = 8.8
Identities = 12/49 (24%), Positives = 27/49 (55%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
R R +++ K K K+K+K+ +++ +++K E + ++ K K K
Sbjct: 89 RLRMQEDLDAKAAKFKEKQKQLEEEKRRQKIEMWDRMQEGKSYKVSAKL 137
>gnl|CDD|236295 PRK08570, rpl19e, 50S ribosomal protein L19e; Reviewed.
Length = 150
Score = 26.4 bits (59), Expect = 8.9
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK--KKKKKKKKKKKKKKIMRKE 216
R R + EK+KK ++ +K KK + KKE+ + ++ ++ + + KI RK
Sbjct: 60 RGRARERHEKRKKGRRRGPGSRKGKKGARTPKKERWINRIRALRRYLRELRDEGKIDRKT 119
>gnl|CDD|204032 pfam08703, PLC-beta_C, PLC-beta C terminal. This domain
corresponds to the alpha helical C terminal domain of
phospholipase C beta.
Length = 181
Score = 26.7 bits (59), Expect = 8.9
Identities = 17/52 (32%), Positives = 33/52 (63%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
EK+ + KK K+ +K+KK KKK ++K+ ++ ++ K K+K ++ + E N
Sbjct: 48 EKQAAQLKKLKEISEKEKKELKKKLDRKRLERIQEAKTKEKHAQEREKTEIN 99
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 27.0 bits (60), Expect = 8.9
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K E ++ K +++ + + K K K++ ++ +
Sbjct: 261 KTIEGEELLKLEERTAAWRAELRKSMKPKERTAIERVPMPE 301
>gnl|CDD|153355 cd07671, F-BAR_PSTPIP1, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine
Phosphatase-Interacting Protein 1. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. Proline-Serine-Threonine
Phosphatase-Interacting Protein 1 (PSTPIP1), also known
as CD2 Binding Protein 1 (CD2BP1), is mainly expressed
in hematopoietic cells. It is a binding partner of the
cell surface receptor CD2 and PTP-PEST, a tyrosine
phosphatase which functions in cell motility and Rac1
regulation. It also plays a role in the activation of
the Wiskott-Aldrich syndrome protein (WASP), which
couples actin rearrangement and T cell activation.
Mutations in the gene encoding PSTPIP1 cause the
autoinflammatory disorder known as PAPA (pyogenic
sterile arthritis, pyoderma gangrenosum, and acne)
syndrome. PSTPIP1 contains an N-terminal F-BAR domain,
PEST motifs, and a C-terminal SH3 domain. F-BAR domains
form banana-shaped dimers with a positively-charged
concave surface that binds to negatively-charged lipid
membranes. They can induce membrane deformation in the
form of long tubules.
Length = 242
Score = 26.8 bits (59), Expect = 8.9
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
R R+KE++KK E ++ +K K KK E KK +++ ++ +
Sbjct: 92 EFRERQKEQRKKYEAVMERVQKSKVSLYKKTMESKKTYEQRCREADE 138
>gnl|CDD|218652 pfam05602, CLPTM1, Cleft lip and palate transmembrane protein 1
(CLPTM1). This family consists of several eukaryotic
cleft lip and palate transmembrane protein 1 sequences.
Cleft lip with or without cleft palate is a common birth
defect that is genetically complex. The nonsyndromic
forms have been studied genetically using linkage and
candidate-gene association studies with only partial
success in defining the loci responsible for orofacial
clefting. CLPTM1 encodes a transmembrane protein and has
strong homology to two Caenorhabditis elegans genes,
suggesting that CLPTM1 may belong to a new gene family.
This family also contains the human cisplatin resistance
related protein CRR9p which is associated with
CDDP-induced apoptosis.
Length = 437
Score = 26.9 bits (60), Expect = 9.1
Identities = 21/103 (20%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 111 YLSATRQTYGRPISGQYEIVTVSWP---DHNPVLWKTMEGIFIHPS----DPVANSHRRR 163
S YG + +T++ P +N L+ +++ S DP +
Sbjct: 79 VWSEENFDYGNWFDRREITLTITIPKEVQNNGSLYLH---VYLGLSGYSLDPTDKGYDSG 135
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+ KKK KKK K EK++ +++K K
Sbjct: 136 KAVHFVFPLTTYLPKKKVKKKNLLGGKSEKEEPEEEKTPAPDK 178
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 27.1 bits (60), Expect = 9.2
Identities = 12/57 (21%), Positives = 33/57 (57%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R + + +KK EE + +++K +++ + + + K+ +++++ K KK+ R+ E
Sbjct: 152 ERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAE 208
Score = 27.1 bits (60), Expect = 9.6
Identities = 10/53 (18%), Positives = 29/53 (54%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+K+ + +K+ + K+ + + + + +KK++ K +++ K + +K E
Sbjct: 112 KDKELELLEKELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEE 164
>gnl|CDD|235245 PRK04183, PRK04183, glutamyl-tRNA(Gln) amidotransferase subunit D;
Validated.
Length = 419
Score = 26.7 bits (60), Expect = 9.2
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
K + +K EK K++ K+ +K +
Sbjct: 44 DIDKIAEIELLEKGEKPKQEPPPKEIEKDPGLPNVS 79
>gnl|CDD|220535 pfam10037, MRP-S27, Mitochondrial 28S ribosomal protein S27.
Members of this family of small ribosomal proteins
possess one of three conserved blocks of sequence found
in proteins that stimulate the dissociation of guanine
nucleotides from G-proteins, leaving open the
possibility that MRP-S27 might be a functional partner
of GTP-binding ribosomal proteins.
Length = 417
Score = 27.0 bits (60), Expect = 9.4
Identities = 5/36 (13%), Positives = 19/36 (52%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+ ++ + +K ++KKK ++ +E +++ +
Sbjct: 381 QRQQLWFFENRKLWQRKKKLREQADEEYQQRHATRA 416
>gnl|CDD|179310 PRK01622, PRK01622, OxaA-like protein precursor; Validated.
Length = 256
Score = 26.6 bits (59), Expect = 9.6
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
S R ++K K E K + K K K+ +K+KE +K+ + K
Sbjct: 85 SQRGMQEKMAVMKPELDKIQAKLKVTKDLEKQKEYQKEMMELYKS 129
>gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII. Eukaryotic DNA topoisomerase
II, GyrB, ParE.
Length = 594
Score = 26.8 bits (60), Expect = 9.6
Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKK--NKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
R +K + ++ + K K K + KK ++ +KKK +
Sbjct: 311 RFGVEKIVSECLLSFLEENPVEASKIVEKVLLAAKARAAAKKARELTRKKKLSSIS 366
>gnl|CDD|234465 TIGR04092, LTA_DltD, D-alanyl-lipoteichoic acid biosynthesis
protein DltD. Members of this protein family are DltD,
part of the DltABCD system widely distributed in the
Firmicutes for D-alanylation of lipoteichoic acids. The
most common form of LTA, as in Staphylococcus aureus,
has a backbone of polyglycerolphosphate.
Length = 383
Score = 26.8 bits (60), Expect = 9.8
Identities = 15/60 (25%), Positives = 27/60 (45%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
SD + + ++ KK + K + + +K+ + + K K KKK KK KK+
Sbjct: 173 SDKILENLLKKLYANGKKLSKFDKVYLEPYYRNLLEKEDDLFSRFKLKYKKKIKKAAKKL 232
>gnl|CDD|216205 pfam00937, Corona_nucleoca, Coronavirus nucleocapsid protein.
Length = 346
Score = 26.6 bits (59), Expect = 9.9
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
K K+K KK + KK E KK+ K + K+
Sbjct: 200 AKLGFGKQKSSSKKPSRVTKKSAAEAAKKQLNKPRWKR 237
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.126 0.360
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,900,998
Number of extensions: 1058490
Number of successful extensions: 33292
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18111
Number of HSP's successfully gapped: 4180
Length of query: 218
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 125
Effective length of database: 6,812,680
Effective search space: 851585000
Effective search space used: 851585000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.6 bits)