RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17901
(218 letters)
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR
motifs, unfolded protein response, putativ binding
protein, plant protein; 1.95A {Arabidopsis thaliana}
Length = 199
Score = 145 bits (368), Expect = 3e-44
Identities = 62/187 (33%), Positives = 86/187 (45%), Gaps = 40/187 (21%)
Query: 8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTG 67
+ +T GS +KLM+ + RLHSHDV YG+GSGQQSVTG D NS+WI+K G
Sbjct: 12 GKEGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPGVVDSNSYWIVKPVPG 71
Query: 68 KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSA----------------- 110
T K+G+ +K IRL H T K LHSH +SP+SG EVS
Sbjct: 72 TTEKQGDAVKSGATIRLQHMKTRKWLHSHLHASPISGNLEVSCFGDDTNSDTGDHWKLII 131
Query: 111 ----------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGI 148
YL + + Y R GQ E+ + + +W EG+
Sbjct: 132 EGSGKTWKQDQRVRLQHIDTSGYLHSHDKKYQRIAGGQQEVCGIREKKAD-NIWLAAEGV 190
Query: 149 FIHPSDP 155
++ ++
Sbjct: 191 YLPLNES 197
Score = 37.6 bits (87), Expect = 0.001
Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Query: 68 KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPL-SGAQEVSAY 111
+ K G I I+L H T LHSH SG Q V+ +
Sbjct: 10 ASGKEGVEITYGSAIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGF 54
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP:
b.42.6.1
Length = 187
Score = 139 bits (351), Expect = 9e-42
Identities = 75/185 (40%), Positives = 91/185 (49%), Gaps = 39/185 (21%)
Query: 8 ARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTG 67
+ +VTC SV+K +N + RLHSHDVKYG+GSGQQSVT + +D+NSHW I
Sbjct: 1 GSDEDFVTCYSVLKFINANDGSRLHSHDVKYGSGSGQQSVTAVKNSDDINSHWQIFPALN 60
Query: 68 KTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQ-EVSA---------------- 110
C RG+ IKC D IRL H TT LHSHHF++PLS EVSA
Sbjct: 61 AKCNRGDAIKCGDKIRLKHLTTGTFLHSHHFTAPLSKQHQEVSAFGSEAESDTGDDWTVI 120
Query: 111 ---------------------YLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIF 149
YLS + Q +GRPI GQ E+V WK EGI+
Sbjct: 121 CNGDEWLESEQFKLRHAVTGSYLSLSGQQFGRPIHGQREVVGTDSITGG-SAWKVAEGIY 179
Query: 150 IHPSD 154
I
Sbjct: 180 IKHQQ 184
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 49.4 bits (117), Expect = 9e-08
Identities = 13/69 (18%), Positives = 35/69 (50%), Gaps = 7/69 (10%)
Query: 156 VANSHRRRRKKEKKKK--EEKKKKKKKKKKKKNKKKKKEKKKKKKK-----KKKKKKKKK 208
+A + R ++ E +K EE++K+ ++ +++ ++K KK +++ ++ +K
Sbjct: 74 IAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK 133
Query: 209 KKKIMRKEE 217
K R +
Sbjct: 134 NKINNRIAD 142
Score = 48.2 bits (114), Expect = 3e-07
Identities = 10/60 (16%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKE--KKKKKKKKKKKKKKKKKKKIMRKEEN 218
R ++K ++ + K +++ ++K KK +E +++ ++ +K K + K ++ +
Sbjct: 91 REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 150
Score = 29.0 bits (64), Expect = 1.1
Identities = 8/51 (15%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 163 RRKKEKKK-KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K +++ +E+ KK ++ ++++++ +K K + K ++ I
Sbjct: 104 ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADII 154
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor
domain, binding core domain, signaling protein; 3.00A
{Rattus norvegicus} PDB: 3uj0_A 3t8s_A*
Length = 604
Score = 48.0 bits (113), Expect = 9e-07
Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 5/136 (3%)
Query: 9 RNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGK 68
V G V L V+ LH+ + G V N+ W I
Sbjct: 171 SIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGANEVNSVNA----NTSWKIVLFMKW 226
Query: 69 TCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYE 128
+ + + +K D++RL H K L + + SAT T + + E
Sbjct: 227 SDNKDDILKGGDVVRLFHAEQEKFLTADEHRKKQHVFLRTTGRQSATSATSSK-ALWEVE 285
Query: 129 IVTVSWPDHNPVLWKT 144
+V W +
Sbjct: 286 VVQHDPARGGAGYWNS 301
Score = 37.6 bits (86), Expect = 0.002
Identities = 20/111 (18%), Positives = 41/111 (36%), Gaps = 2/111 (1%)
Query: 6 SKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAP 65
++ + G+V++L+++ L + + + S + I+ P
Sbjct: 107 NRKLLGTVIQYGNVIQLLHLKSNKYLTVNKRLPALLEKNAMRVTLDEAGNEGSWFYIQ-P 165
Query: 66 TGKTCKRGEPIKCNDIIRLTHTTTNKNLH-SHHFSSPLSGAQEVSAYLSAT 115
K G+ + D + L + LH S H GA EV++ + T
Sbjct: 166 FYKLRSIGDSVVIGDKVVLNPVNAGQPLHASSHQLVDNPGANEVNSVNANT 216
Score = 34.6 bits (78), Expect = 0.021
Identities = 17/126 (13%), Positives = 35/126 (27%), Gaps = 3/126 (2%)
Query: 5 KSKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVT--GTEVKEDVNSHWII 62
K + + G VV+L + + L + + + ++ + W +
Sbjct: 225 KWSDNKDDILKGGDVVRLFHAEQEKFLTADEHRKKQHVFLRTTGRQSATSATSSKALWEV 284
Query: 63 KAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRP 122
+ RG N + R H T L + A E + +
Sbjct: 285 E-VVQHDPARGGAGYWNSLFRFKHLATGHYLAAEVDPDFEEEALEFQPSVDPDQDASRSR 343
Query: 123 ISGQYE 128
+ E
Sbjct: 344 LRNAQE 349
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC
repeat; 2.70A {Saccharomyces cerevisiae}
Length = 963
Score = 45.2 bits (106), Expect = 7e-06
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
A + ++ KKEK EE+KKK+ ++K+K+ + KK K+ K+ ++ K K K
Sbjct: 821 AKARAKKTKKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKNKYSSK 875
Score = 40.2 bits (93), Expect = 4e-04
Identities = 23/102 (22%), Positives = 43/102 (42%), Gaps = 12/102 (11%)
Query: 129 IVTVSWPDHNPVLWKTM----EGIFIHPSDPVANSHRRRRKKE--------KKKKEEKKK 176
++ + D ++ E F +P S + K + K KK
Sbjct: 769 VIGIRGSDQAIPKFQMNCYAKEDAFSYPRMYEEASGKEVEKVATAVLSTTARAKARAKKT 828
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KK+K ++ KKK+ E+K+K+++ KK K+ K+ +N
Sbjct: 829 KKEKGPNEEEKKKEHEEKEKERETNKKGIKETKENDEEFYKN 870
Score = 32.5 bits (73), Expect = 0.11
Identities = 9/48 (18%), Positives = 23/48 (47%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K+++++ +K K+ K+ ++ K K K K + ++ + I
Sbjct: 846 KEKERETNKKGIKETKENDEEFYKNKYSSKPYKVDNMTRILPQQSRYI 893
>1kxf_A Sindbis virus capsid protein; chymotrypsin-like serine proteinase,
wild type, viral protein; 2.38A {Sindbis virus} SCOP:
b.47.1.3 PDB: 1ld4_A 3j0f_A
Length = 264
Score = 43.6 bits (102), Expect = 1e-05
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + + + ++KK+ K+ K KK + ++KKKK+ K K K++++ K E
Sbjct: 53 VIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEA 112
Score = 43.6 bits (102), Expect = 2e-05
Identities = 16/58 (27%), Positives = 30/58 (51%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
V+ + + + + ++KK+ K+ K KK K ++KKKK+ K K K++ M
Sbjct: 49 VSALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRM 106
Score = 40.6 bits (94), Expect = 2e-04
Identities = 14/57 (24%), Positives = 28/57 (49%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R + + + +KK+ K+ K K K +++KKK+ K K K+++ K+
Sbjct: 59 RPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADRL 115
Score = 40.2 bits (93), Expect = 2e-04
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
S V R + + +KK+ K+ K K K +EKKKK+ K K K+++
Sbjct: 50 SALVIGQATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQR 105
Score = 38.6 bits (89), Expect = 7e-04
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ + + +++K+ K+ K KK K ++K+KK+ K K K+++ K
Sbjct: 57 ATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
Score = 37.9 bits (87), Expect = 0.001
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ R R ++KK+ K+ K KK K +KKKK+ K K K+++ K
Sbjct: 57 ATRPQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALK 109
Score = 34.4 bits (78), Expect = 0.017
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
P +P R++K+ K+ + KK K ++KKKK K K K+++ K + +
Sbjct: 60 PQNPRPRPPPRQKKQAPKQPPKPKKPKPQEKKKKQPAKTKPGKRQRMALKLEADR 114
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 43.0 bits (100), Expect = 2e-05
Identities = 9/52 (17%), Positives = 27/52 (51%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R ++K ++ + K +++ ++K KK +E +++ ++ +K K +
Sbjct: 105 WREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIA 156
Score = 39.9 bits (92), Expect = 2e-04
Identities = 13/76 (17%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 149 FIHPSDPVANSHRRRRKKE--KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK-----KKK 201
+A + R ++ E +K +EE++K+ ++ +++ ++K KK ++
Sbjct: 82 PADGYAAIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQR 141
Query: 202 KKKKKKKKKKIMRKEE 217
+ ++ +K K R +
Sbjct: 142 QSEQVEKNKINNRIAD 157
Score = 39.5 bits (91), Expect = 3e-04
Identities = 9/57 (15%), Positives = 31/57 (54%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+R+R +E + +++ ++K KK+ ++ +++ ++ +K K + K ++ +
Sbjct: 109 QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPD 165
Score = 39.1 bits (90), Expect = 4e-04
Identities = 8/56 (14%), Positives = 32/56 (57%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R+ ++E++K+ ++ K +++ ++K K+ ++ +++ ++ +K K ++
Sbjct: 103 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 158
>3kio_B Ribonuclease H2 subunit B; aicardi-goutieres syndrome, RNAse H2,
protein complex, autoimmune disease, endonuclease,
hydrolase, metal-binding; 2.90A {Mus musculus} PDB:
3p5j_B 3puf_B 3p56_B
Length = 332
Score = 41.0 bits (95), Expect = 1e-04
Identities = 15/64 (23%), Positives = 21/64 (32%)
Query: 149 FIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
P + N ++ K + E K+ K K KK K +K K K
Sbjct: 255 LPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSG 314
Query: 209 KKKI 212
K I
Sbjct: 315 MKSI 318
Score = 41.0 bits (95), Expect = 1e-04
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK-----KKKKKKKKKI 212
K++ K K K KK K +K K K K K KK KI
Sbjct: 280 KEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKSIDAFFGAKNKKTGKI 332
Score = 40.2 bits (93), Expect = 2e-04
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K+ K +E + K+ K K K KK K +K K K M+
Sbjct: 267 SKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKVDKSGMKS 317
Score = 32.5 bits (73), Expect = 0.099
Identities = 10/50 (20%), Positives = 16/50 (32%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+K K + + K K K K KK K +K + +
Sbjct: 261 SLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKALAKV 310
Score = 30.6 bits (68), Expect = 0.39
Identities = 16/115 (13%), Positives = 28/115 (24%), Gaps = 2/115 (1%)
Query: 105 AQEVSAYLSATRQTYGRPISGQYEIVTVSWPDHNPVLWKTMEGIFI--HPSDPVANSHRR 162
+ L A G + + I + +++ +
Sbjct: 192 VNQTVVALKANNVNVGARVQSSAYFSGGQVSRDKEEDYVRYAHGLISDYIPKELSDDLSK 251
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K + KK K + KE K K K KK K ++
Sbjct: 252 FLKLPEPPASLPNPPSKKLKLSDEPVEAKEDYTKFNTKDLKTGKKNSKMTAAQKA 306
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 38.9 bits (91), Expect = 8e-04
Identities = 8/53 (15%), Positives = 24/53 (45%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ KE K EK + + +K + + ++ + +++ K + +++E
Sbjct: 940 QNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEE 992
Score = 35.5 bits (82), Expect = 0.012
Identities = 10/60 (16%), Positives = 25/60 (41%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R ++E K + +++ K K+ + + +KK ++ K K + + + E
Sbjct: 970 ERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELK 1029
Score = 33.9 bits (78), Expect = 0.040
Identities = 11/60 (18%), Positives = 25/60 (41%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ + EKK EE K K + ++ + K++ K +K++ ++ + E
Sbjct: 997 RKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEITET 1056
Score = 33.5 bits (77), Expect = 0.045
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R K+ E K + ++K + K+ K +K + + +K E
Sbjct: 915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVER 971
Score = 32.8 bits (75), Expect = 0.082
Identities = 6/60 (10%), Positives = 21/60 (35%), Gaps = 4/60 (6%)
Query: 163 RRKKEKKKK----EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + ++K ++ K +K E +K + ++ + +++ K
Sbjct: 928 NKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVL 987
Score = 32.0 bits (73), Expect = 0.16
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
RR K++ ++ K + + ++ K E K + ++K ++ K+ K ++ K N
Sbjct: 898 RRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNN 953
Score = 30.8 bits (70), Expect = 0.35
Identities = 9/65 (13%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK----KKKKKI 212
+ + +E+ K +K+ + +KK ++ K K + ++ K++ +
Sbjct: 975 SEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034
Query: 213 MRKEE 217
++ E+
Sbjct: 1035 LKTEK 1039
Score = 28.9 bits (65), Expect = 1.3
Identities = 11/58 (18%), Positives = 27/58 (46%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+R +E+ K K+ + + +KK ++ + K + ++ + K++ KEE
Sbjct: 984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEE 1041
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A
{Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A*
1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A*
1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A*
2ga2_A* 2oaz_A*
Length = 478
Score = 38.7 bits (90), Expect = 8e-04
Identities = 13/61 (21%), Positives = 27/61 (44%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + E ++ E+ + K++ + ++ + KKKKKKKKK+ K
Sbjct: 51 AGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRGPK 110
Query: 212 I 212
+
Sbjct: 111 V 111
Score = 36.1 bits (83), Expect = 0.007
Identities = 12/60 (20%), Positives = 24/60 (40%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
PS + + + ++ + K++++ + KKKKKKKKK+
Sbjct: 48 PSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
Score = 35.3 bits (81), Expect = 0.011
Identities = 11/58 (18%), Positives = 24/58 (41%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
P A + K+ +E ++ ++ + ++ + ++ KKKKKKK
Sbjct: 47 GPSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKK 104
Score = 31.8 bits (72), Expect = 0.18
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R++ E+ KKK++KKKK+K +++ K+ + +++ R
Sbjct: 23 REEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLERSALE 77
Score = 31.4 bits (71), Expect = 0.19
Identities = 8/61 (13%), Positives = 22/61 (36%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++ + ++ + ++ ++ K++ E + KKKKK +K
Sbjct: 48 PSAAGEQEPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKR 107
Query: 217 E 217
Sbjct: 108 G 108
Score = 31.4 bits (71), Expect = 0.22
Identities = 7/54 (12%), Positives = 23/54 (42%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ +K+ + ++ ++ + K++++ + KKKK +K+
Sbjct: 55 EPDKESGASVDEVARQLERSALEDKERDEDDEDGDGDGDGATGKKKKKKKKKRG 108
Score = 31.4 bits (71), Expect = 0.23
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
R + EE KKK++KKKK +++ K+ + ++
Sbjct: 23 REEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQ 70
Score = 31.4 bits (71), Expect = 0.23
Identities = 11/68 (16%), Positives = 29/68 (42%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
H + + R ++ KKK++KKKK K +++ K+ + ++ +
Sbjct: 13 HLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEVARQLE 72
Query: 211 KIMRKEEN 218
+ +++
Sbjct: 73 RSALEDKE 80
Score = 28.3 bits (63), Expect = 1.8
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKE 192
+ KKKKKKKKK+ K + +
Sbjct: 87 DGDGDGDGATGKKKKKKKKKRGPKVQTD 114
Score = 28.3 bits (63), Expect = 2.4
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E+ + + ++ KKK++KKKK K ++E
Sbjct: 5 EEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEP 56
Score = 27.6 bits (61), Expect = 3.9
Identities = 9/56 (16%), Positives = 24/56 (42%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+++++ ++ KKK+++KKK K +++ K+ +E
Sbjct: 12 SHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASVDEV 67
Score = 26.8 bits (59), Expect = 6.3
Identities = 12/57 (21%), Positives = 22/57 (38%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ SH ++E ++ KKK +KKKK K +++ K+
Sbjct: 8 AASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEPDKESGASV 64
Score = 26.4 bits (58), Expect = 7.7
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ +++ E+ KKK++KKKK K
Sbjct: 6 EVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPS 49
Score = 26.4 bits (58), Expect = 8.6
Identities = 8/56 (14%), Positives = 21/56 (37%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+A + +++ ++ K+K++KKKK K +++
Sbjct: 1 MAGVEEVAASGSHLNGDLDPDDREEGAASTAEEAAKKKRRKKKKSKGPSAAGEQEP 56
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis
lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A*
1u0y_A* 1yt2_A*
Length = 269
Score = 38.0 bits (89), Expect = 0.001
Identities = 10/46 (21%), Positives = 28/46 (60%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K + +E ++++ K++K++ + ++++++KK K KK +K
Sbjct: 216 SKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKT 261
Score = 36.0 bits (84), Expect = 0.004
Identities = 10/46 (21%), Positives = 26/46 (56%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K + E+ ++++ K++ + E ++++++KK K KK +K
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEK 260
Score = 36.0 bits (84), Expect = 0.005
Identities = 10/48 (20%), Positives = 27/48 (56%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ + EE ++++ K++K + ++++++KK K KK +K +
Sbjct: 215 SSKTETVEEPMEEEEAAKEEKEDSDDEAAVEEEEEEKKPKTKKVEKTV 262
>2zkr_c 60S ribosomal protein L4; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 421
Score = 37.9 bits (87), Expect = 0.002
Identities = 15/60 (25%), Positives = 25/60 (41%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ + + +K + K ++K K ++KK KK KK KK KK +K
Sbjct: 342 RQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKP 401
Score = 37.5 bits (86), Expect = 0.002
Identities = 18/55 (32%), Positives = 24/55 (43%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
A + + +EK +K ++KK KK KK KK KK KK KK
Sbjct: 354 AAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPA 408
Score = 37.5 bits (86), Expect = 0.002
Identities = 19/55 (34%), Positives = 24/55 (43%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K E+K KK ++KK KK KK K+ KK KK KK +K
Sbjct: 357 ALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKK 411
Score = 37.5 bits (86), Expect = 0.002
Identities = 19/54 (35%), Positives = 24/54 (44%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ + K EEK KK ++KK KK KK KK KK KK +K
Sbjct: 353 KAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKK 406
Score = 36.4 bits (83), Expect = 0.005
Identities = 17/59 (28%), Positives = 22/59 (37%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ + K E+K KK ++K KK KK KK KK KK K
Sbjct: 347 HKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADK 405
Score = 36.4 bits (83), Expect = 0.006
Identities = 14/57 (24%), Positives = 24/57 (42%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ + + K + K ++K K ++K+ KK KK KK KK K+
Sbjct: 345 KNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKP 401
Score = 35.2 bits (80), Expect = 0.011
Identities = 15/56 (26%), Positives = 23/56 (41%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++ K K K + K +K KK ++KK KK KK KK + +
Sbjct: 338 NTILRQAKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGK 393
Score = 34.8 bits (79), Expect = 0.015
Identities = 18/61 (29%), Positives = 25/61 (40%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A +H+ R K E K ++K KK +KK K+ KK KK KK
Sbjct: 344 AKNHKLRMDKAAAALEAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAA 403
Query: 217 E 217
+
Sbjct: 404 D 404
Score = 34.8 bits (79), Expect = 0.017
Identities = 16/59 (27%), Positives = 21/59 (35%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ KK + +K KK KK K K+ KK KK +KK K
Sbjct: 359 EAKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEK 417
Score = 34.8 bits (79), Expect = 0.018
Identities = 20/57 (35%), Positives = 25/57 (43%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ + RRKK KK KK KK KK KK KK +KK ++KK
Sbjct: 362 SEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 34.1 bits (77), Expect = 0.030
Identities = 18/48 (37%), Positives = 24/48 (50%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ R+K+ KK KK KK KK KK KK +KK ++KK
Sbjct: 371 KPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
Score = 33.7 bits (76), Expect = 0.033
Identities = 18/59 (30%), Positives = 26/59 (44%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
A S + +K ++++ KK KK KK KK KK KK +KK +K
Sbjct: 360 AKSEEKGVPGKKPRRKKGKKTVGVKKPKKPVVGKKAAATKKPAADKKPAEKKPTTEEKK 418
>4a17_C RPL4, ribosomal protein L3; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_C 4a1c_C 4a1e_C
Length = 410
Score = 37.5 bits (86), Expect = 0.002
Identities = 12/64 (18%), Positives = 24/64 (37%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
+P A + + KK + + K++ K +K K KK + K ++ K
Sbjct: 334 NPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQ 393
Query: 214 RKEE 217
+
Sbjct: 394 EDAD 397
Score = 33.6 bits (76), Expect = 0.044
Identities = 8/56 (14%), Positives = 18/56 (32%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ K + + +K K KK K ++ K +++ +E
Sbjct: 349 EASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQE 404
Score = 33.3 bits (75), Expect = 0.049
Identities = 10/56 (17%), Positives = 22/56 (39%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R+ + +K K KK + K E+ K +++ + ++I +E
Sbjct: 355 RQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQEIKEGDE 410
Score = 32.1 bits (72), Expect = 0.12
Identities = 8/61 (13%), Positives = 21/61 (34%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A + +++ K K K KK + + ++ K +++ + +
Sbjct: 347 AAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKARQEDADFIAQGQEIK 406
Query: 217 E 217
E
Sbjct: 407 E 407
Score = 31.7 bits (71), Expect = 0.14
Identities = 11/64 (17%), Positives = 25/64 (39%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
P+ N++ + K +++ KK + K ++ + +K K KK + +
Sbjct: 323 PLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNK 382
Query: 215 KEEN 218
E
Sbjct: 383 ANEE 386
Score = 31.7 bits (71), Expect = 0.17
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K K++ ++ + K K++ K +K K KK + K +
Sbjct: 338 KIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQAWIAAFNKANEEAIAKA 391
Score = 28.6 bits (63), Expect = 1.4
Identities = 13/57 (22%), Positives = 20/57 (35%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
R+K K K K + KK + K K++ K +K K +K
Sbjct: 316 THERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKG 372
Score = 28.2 bits (62), Expect = 2.4
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 160 HRRRRKKE--KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
RKK K K K+ KK E K K++ K +K K + +
Sbjct: 315 ETHERKKNPLTNNNALFKLNPAAKIVKEQAKKAAEASKAKRQATLKANRKAAKTHKKGSQ 374
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.004
Identities = 26/156 (16%), Positives = 42/156 (26%), Gaps = 54/156 (34%)
Query: 9 RN--NQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDV---------- 56
N V G L Y + L K +G Q + +E K
Sbjct: 371 VNGAKNLVVSGPPQSL----YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 57 -NSHWIIKAPTGKTC----KRGEPIKCNDI-IRLTHTTTNKNLHSHHFSSPLSGAQEVSA 110
+SH ++ A + K DI I + T +L + +S
Sbjct: 427 FHSHLLVPA-SDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL------------RVLSG 473
Query: 111 YL--SATRQTYGRPISGQYEIVTVSWPDHNPVLWKT 144
+ I+ + PV W+T
Sbjct: 474 SISERIVDC-----------IIRL------PVKWET 492
Score = 31.9 bits (72), Expect = 0.17
Identities = 22/141 (15%), Positives = 42/141 (29%), Gaps = 51/141 (36%)
Query: 46 SVTGTEVKEDVNSHWIIKAPTGKTCKRGEPIKCNDIIRLTHTTTNKNLH------SHHF- 98
S++ +E V + + K N +H K + + +
Sbjct: 340 SISNLT-QEQVQDY--VN-------------KTN-----SHLPAGKQVEISLVNGAKNLV 378
Query: 99 -SSP---LSG------AQEVSAYLSATRQTY-GRPISGQYEIVTVSWPDHNPVLWKTMEG 147
S P L G + + L +R + R + + V+ P H+ +L +
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDL 438
Query: 148 IF---------IHPSD---PV 156
I + D PV
Sbjct: 439 INKDLVKNNVSFNAKDIQIPV 459
Score = 29.6 bits (66), Expect = 0.83
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 25/59 (42%)
Query: 8 ARNNQYVTCGSV------------VKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKE 54
N QYV G + +KL +D + L Q+S++ EV+
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQKIDI-IEL------------QKSLSLEEVEG 1893
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 36.7 bits (85), Expect = 0.005
Identities = 7/58 (12%), Positives = 31/58 (53%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ + + EE + + KK++ + + + + ++++++ ++ + +KK M+++
Sbjct: 899 EKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956
Score = 34.4 bits (79), Expect = 0.028
Identities = 7/57 (12%), Positives = 34/57 (59%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ + ++EE++ ++ + +KKK +++ + +++ ++++ ++K + +K+ +
Sbjct: 928 ILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGK 984
Score = 32.9 bits (75), Expect = 0.077
Identities = 6/57 (10%), Positives = 32/57 (56%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ E + +EE+++ ++ + +KK +++ +++ ++++ ++K + + + +
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADG 983
Score = 32.1 bits (73), Expect = 0.14
Identities = 10/51 (19%), Positives = 27/51 (52%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++ ++ + EKKK +++ + + +++E ++K + +K K KK
Sbjct: 937 EEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKK 987
Score = 31.0 bits (70), Expect = 0.30
Identities = 12/58 (20%), Positives = 30/58 (51%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++ + EKKK +++ +++ +++ ++K + +K K KK + IM + N
Sbjct: 943 SQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNN 1000
Score = 30.6 bits (69), Expect = 0.42
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+EE+K K K K K++ E + + KK++K +++ +K K + E+
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069
Score = 29.4 bits (66), Expect = 1.2
Identities = 9/60 (15%), Positives = 23/60 (38%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ R++ + EK + K KK + + K K++K +++ ++
Sbjct: 969 AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028
Score = 29.0 bits (65), Expect = 1.2
Identities = 10/55 (18%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 161 RRRRKKEKKKKEEKK----KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R ++ + +KKK +++ +++ ++++ +K + EK K KK + +
Sbjct: 942 RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIME 996
Score = 28.3 bits (63), Expect = 2.6
Identities = 10/51 (19%), Positives = 29/51 (56%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
E + K+E+K +++ +K K+ + + ++ + + + + K ++ +KEE
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095
Score = 27.9 bits (62), Expect = 2.8
Identities = 13/52 (25%), Positives = 26/52 (50%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++EEK K K K K + + + KK++K +++ +K K+ + E
Sbjct: 1017 TTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
Score = 27.5 bits (61), Expect = 3.9
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R KKE+K ++E +K K+K + + + ++ + + + + K + KK++
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEE 1095
Score = 27.5 bits (61), Expect = 4.2
Identities = 11/60 (18%), Positives = 28/60 (46%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
N+ + +K +++ ++++K K K K K + + + + KK++ R+E
Sbjct: 998 QNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQE 1057
Score = 27.1 bits (60), Expect = 5.7
Identities = 9/55 (16%), Positives = 23/55 (41%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ K +E+K +++ ++E+K K K K K + ++ + +
Sbjct: 996 EDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050
Score = 26.7 bits (59), Expect = 7.7
Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKK--KEKKKKKKKKKKKKKKKKKKK 211
+E+K K K K K + + + KE+K +++ +K K+K + +
Sbjct: 1023 EEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESS 1070
Score = 26.7 bits (59), Expect = 8.1
Identities = 11/53 (20%), Positives = 30/53 (56%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + KKEEK +++ +K K+K + + + ++ + + + + K + ++EE
Sbjct: 1045 EVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEEL 1097
>3izc_e 60S ribosomal protein RPL7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_e
3o58_G 3o5h_G 3u5e_F 3u5i_F
Length = 244
Score = 35.9 bits (82), Expect = 0.005
Identities = 7/63 (11%), Positives = 27/63 (42%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
S ++ K ++K E+ ++ +K +K+ ++ +K+ + ++ +
Sbjct: 7 LTPESQLKKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAK 66
Query: 215 KEE 217
++
Sbjct: 67 RDA 69
Score = 31.3 bits (70), Expect = 0.18
Identities = 6/51 (11%), Positives = 20/51 (39%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + ++ K K+K+ + +K+ + ++ + K+ K
Sbjct: 21 KTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKA 71
Score = 30.9 bits (69), Expect = 0.23
Identities = 9/58 (15%), Positives = 23/58 (39%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ E+ ++ K+K+ ++N +KE + ++ + K+ K E
Sbjct: 23 AEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQ 80
Score = 30.9 bits (69), Expect = 0.24
Identities = 7/59 (11%), Positives = 23/59 (38%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ ++K ++ ++ +K K+K + +K+ + ++ + K K
Sbjct: 15 KSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAG 73
Score = 30.9 bits (69), Expect = 0.25
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KK K ++K ++ ++ +K K+K+ ++ E
Sbjct: 14 KKSKAQQKTAEQVAAERAARKAANKEKRAIILERNAAYQKEYETA 58
Score = 30.2 bits (67), Expect = 0.47
Identities = 6/58 (10%), Positives = 23/58 (39%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + +K K+K+ ++ +K+ + ++ + K+ K + ++
Sbjct: 24 EQVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQH 81
Score = 29.0 bits (64), Expect = 0.90
Identities = 5/50 (10%), Positives = 19/50 (38%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ +K ++K+ ++ +K+ + ++ + K+ K
Sbjct: 25 QVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGS 74
Score = 29.0 bits (64), Expect = 1.0
Identities = 7/58 (12%), Positives = 23/58 (39%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ ++ +K K+K+ ++ +K+ E ++ + K+ K + +
Sbjct: 25 QVAAERAARKAANKEKRAIILERNAAYQKEYETAERNIIQAKRDAKAAGSYYVEAQHK 82
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I
aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus
radiodurans}
Length = 851
Score = 36.4 bits (84), Expect = 0.005
Identities = 8/47 (17%), Positives = 18/47 (38%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K+ K+ ++K + KK+ K + + + + K K
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKA 674
Score = 36.4 bits (84), Expect = 0.005
Identities = 7/47 (14%), Positives = 17/47 (36%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K+ K+ ++K KK+ K + + + + K +
Sbjct: 628 KDTWGKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKA 674
Score = 35.2 bits (81), Expect = 0.014
Identities = 7/52 (13%), Positives = 18/52 (34%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
K+ +++ + KK+ K + + + + K K + E
Sbjct: 633 KQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQPLTPEQDAE 684
Score = 34.8 bits (80), Expect = 0.020
Identities = 7/45 (15%), Positives = 15/45 (33%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K+ ++K + KK+ K + + K K +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQP 676
Score = 34.0 bits (78), Expect = 0.030
Identities = 7/44 (15%), Positives = 17/44 (38%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K+ ++K + KK+ K + + + + K K +
Sbjct: 632 GKQGGGTQQKAEGKKRPSTKGRGPDEVRGEGSSSPAKAHAPKAQ 675
>4a17_V RPL7, 60S ribosomal protein L7; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_V 4a1c_V 4a1e_V
Length = 239
Score = 35.9 bits (82), Expect = 0.006
Identities = 9/63 (14%), Positives = 32/63 (50%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
V + +++ +++K ++ K +++K + ++K + K +K + + +KK +
Sbjct: 4 FVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEK 63
Query: 215 KEE 217
++
Sbjct: 64 RKA 66
Score = 31.7 bits (71), Expect = 0.14
Identities = 11/59 (18%), Positives = 27/59 (45%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R +K +K K E++K + K++ + + +K + + +KK +K ++
Sbjct: 12 KLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTG 70
Score = 31.3 bits (70), Expect = 0.17
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
K E +KK + +K + K ++ K + K++K + K + E
Sbjct: 2 SKFVPENVQKKLARDEKLRKAKAEQRKASSAQMKQRKAEWISKAQKYAAE 51
Score = 30.5 bits (68), Expect = 0.37
Identities = 12/58 (20%), Positives = 27/58 (46%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R+ + +++K + K++K + K +K E + +KK +K+K +K
Sbjct: 20 RKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAE 77
Score = 30.1 bits (67), Expect = 0.44
Identities = 11/57 (19%), Positives = 24/57 (42%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ ++ K + K++K + K K + + +KK +K+K +K E
Sbjct: 22 AKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAEA 78
Score = 29.0 bits (64), Expect = 0.94
Identities = 10/58 (17%), Positives = 25/58 (43%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ +++ + K++K + K + + E +KK +K+K +K + E
Sbjct: 22 AKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYVPAEAK 79
Score = 26.7 bits (58), Expect = 5.2
Identities = 10/55 (18%), Positives = 24/55 (43%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ +RK + +++K + K +K + + +KK +K+K +K
Sbjct: 20 RKAKAEQRKASSAQMKQRKAEWISKAQKYAAEYEAAEKKIVDEKRKARKTGAFYV 74
>3iz5_e 60S ribosomal protein L7 (L30P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_e
Length = 244
Score = 35.2 bits (80), Expect = 0.009
Identities = 12/63 (19%), Positives = 29/63 (46%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
V +R++E+ EKK+K +K K + K + ++ + + + K+ ++
Sbjct: 9 AVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLK 68
Query: 215 KEE 217
+E
Sbjct: 69 REA 71
Score = 31.7 bits (71), Expect = 0.12
Identities = 9/45 (20%), Positives = 20/45 (44%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K EK K+++++ +KK++ +K K + K +
Sbjct: 5 AAKVAVPEKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYAR 49
Score = 31.0 bits (69), Expect = 0.24
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K++ ++ +KK+K +K K + K I + E
Sbjct: 15 ILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQ 52
Score = 31.0 bits (69), Expect = 0.26
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
E+ K+++++ +KK+K +K K + K + + E
Sbjct: 12 EKVILKRRREEVWAAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYE 58
Score = 29.8 bits (66), Expect = 0.56
Identities = 7/57 (12%), Positives = 23/57 (40%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+++K +K + + K + + + + + K+ + K++ + K E
Sbjct: 27 EKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPEA 83
Score = 28.6 bits (63), Expect = 1.2
Identities = 8/58 (13%), Positives = 24/58 (41%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+++K +K + + K + + + E + K+ + K++ + K + E
Sbjct: 27 EKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYVSPEAK 84
Score = 26.7 bits (58), Expect = 6.1
Identities = 9/55 (16%), Positives = 23/55 (41%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
A +++ EK K E K + ++ + + + K+ + K++ + K
Sbjct: 25 AAEKKQKVAAEKIKAAENTKVIYARAEQYAGEYEAQDKELVQLKREARMKGGFYV 79
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 35.1 bits (81), Expect = 0.011
Identities = 9/35 (25%), Positives = 23/35 (65%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+ +E +K+++ ++K + K KEK +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 35.1 bits (81), Expect = 0.013
Identities = 8/35 (22%), Positives = 24/35 (68%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
+ K+ +K+++ ++K ++ K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.7 bits (80), Expect = 0.016
Identities = 8/35 (22%), Positives = 24/35 (68%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
+ K+ +++++ ++K ++ K K+K EK++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.3 bits (79), Expect = 0.020
Identities = 8/35 (22%), Positives = 22/35 (62%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ K+ +K++ ++K + K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.3 bits (79), Expect = 0.021
Identities = 8/35 (22%), Positives = 24/35 (68%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+ KE +K+++ ++K ++ K K++ +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.3 bits (79), Expect = 0.022
Identities = 9/32 (28%), Positives = 23/32 (71%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKK 194
++ +K+++ E+K ++ K K+K +K++ EK+
Sbjct: 309 VKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 34.0 bits (78), Expect = 0.031
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK 195
+ K+ +K++E ++K ++ K K+ +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.6 bits (77), Expect = 0.034
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ K+ +K+++ ++K + K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.2 bits (76), Expect = 0.049
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ K+ +K+ + ++K ++ K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 33.2 bits (76), Expect = 0.052
Identities = 8/32 (25%), Positives = 22/32 (68%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K+N+K+++ ++K ++ K K+K +K++
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERL 337
Score = 33.2 bits (76), Expect = 0.057
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
+ KE +K+ E ++K ++ K K K +K+ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.8 bits (75), Expect = 0.058
Identities = 7/35 (20%), Positives = 23/35 (65%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
+ K+ +K+++ ++ ++ K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.8 bits (75), Expect = 0.076
Identities = 8/33 (24%), Positives = 21/33 (63%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K+ K+++ E+K ++ K K+K +K++ +
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLE 338
Score = 32.4 bits (74), Expect = 0.078
Identities = 8/34 (23%), Positives = 22/34 (64%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K+ + +++ +EK ++ K K+K +K++ +K
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEK 339
Score = 32.0 bits (73), Expect = 0.11
Identities = 7/35 (20%), Positives = 23/35 (65%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K+ +K ++ +++ ++ K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.0 bits (73), Expect = 0.11
Identities = 8/35 (22%), Positives = 23/35 (65%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ K+ +K+++ +K ++ K K+K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 32.0 bits (73), Expect = 0.12
Identities = 6/35 (17%), Positives = 23/35 (65%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+ ++ +K+++ ++K + K ++K +K++ +K+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 30.5 bits (69), Expect = 0.34
Identities = 6/34 (17%), Positives = 21/34 (61%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKK 191
+ + +K+ + +++ ++ K K+K +K + +K+
Sbjct: 307 QAVKENQKRRETEEKMRRAKLAKEKAEKERLEKQ 340
Score = 27.8 bits (62), Expect = 2.8
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ KE +K+++ ++K ++ K K+ KE
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKE 335
Score = 27.8 bits (62), Expect = 2.8
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 184 KKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ K+ +++++ ++K ++ K K+K + R E+
Sbjct: 306 LQAVKENQKRRETEEKMRRAKLAKEKAEKERLEK 339
>1a31_A Protein (topoisomerase I); topoisomerase I/DNA, DNA, isomerase/DNA
complex; HET: DNA 5IU PTR; 2.10A {Homo sapiens} SCOP:
d.163.1.2 e.15.1.1 PDB: 1k4t_A* 1k4s_A* 1sc7_A* 1t8i_A*
1tl8_A* 1seu_A* 1a35_A* 1a36_A* 1r49_A* 1rrj_A* 1nh3_A*
1lpq_A* 1rr8_C* 1ej9_A*
Length = 591
Score = 35.5 bits (81), Expect = 0.012
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + + ++ + K K K KK E KKK ++ +++ K + + +EEN
Sbjct: 481 KEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREEN 537
Score = 33.6 bits (76), Expect = 0.043
Identities = 14/55 (25%), Positives = 28/55 (50%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ + KK++ ++ K K K K K KK + KKK ++ ++++M+ E
Sbjct: 474 QTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLE 528
Score = 32.8 bits (74), Expect = 0.071
Identities = 13/66 (19%), Positives = 27/66 (40%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
H P + + K +K++ ++ K+ K + K K KK + KKK
Sbjct: 458 HQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAV 517
Query: 211 KIMRKE 216
+ + ++
Sbjct: 518 QRLEEQ 523
Score = 32.4 bits (73), Expect = 0.093
Identities = 13/62 (20%), Positives = 30/62 (48%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A + K + K ++ K KK + KKK ++ +E+ K + + +++ K+ + +
Sbjct: 487 ARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSK 546
Query: 217 EN 218
N
Sbjct: 547 LN 548
Score = 32.0 bits (72), Expect = 0.13
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ + + K + KK++ ++ K K K K KK + KKK +E+
Sbjct: 465 TFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQ 523
Score = 32.0 bits (72), Expect = 0.14
Identities = 12/68 (17%), Positives = 25/68 (36%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ P + K ++++ ++ K K K K K KK + KKK +
Sbjct: 459 QRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQ 518
Query: 211 KIMRKEEN 218
++ +
Sbjct: 519 RLEEQLMK 526
Score = 32.0 bits (72), Expect = 0.15
Identities = 15/58 (25%), Positives = 26/58 (44%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
H+R K +K + K KK++ +++ K K K K K KK + K++
Sbjct: 458 HQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKK 515
Score = 31.6 bits (71), Expect = 0.18
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
RR + K + K K K KK KKK ++ +++ K + + +++ +
Sbjct: 486 DARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALG 543
Score = 29.0 bits (64), Expect = 1.2
Identities = 13/56 (23%), Positives = 19/56 (33%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
VA +R K ++ + K KK + + K K K K K K
Sbjct: 452 VAILCNHQRAPPKTFEKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTK 507
Score = 26.6 bits (58), Expect = 8.3
Identities = 9/67 (13%), Positives = 25/67 (37%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
V + ++ E KKK ++ +++ K + ++E K+ K +
Sbjct: 495 KADAKVMKDAKTKKVVESKKKAVQRLEEQLMKLEVQATDREENKQIALGTSKLNYLDPRI 554
Query: 211 KIMRKEE 217
+ ++
Sbjct: 555 TVAWCKK 561
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation,
transferase; HET: SAH TYD; 1.40A {Micromonospora
chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A*
4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Length = 416
Score = 34.6 bits (80), Expect = 0.017
Identities = 3/55 (5%), Positives = 16/55 (29%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
S + E++++ + K + + + + + + +
Sbjct: 268 GSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRSV 322
Score = 28.8 bits (65), Expect = 1.2
Identities = 3/43 (6%), Positives = 13/43 (30%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++ + + E++++ + +R E
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDE 307
Score = 28.5 bits (64), Expect = 2.0
Identities = 3/53 (5%), Positives = 17/53 (32%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
S + + + E++++ + K + + + + + +
Sbjct: 269 SRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
Score = 27.7 bits (62), Expect = 3.6
Identities = 2/57 (3%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKN---KKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ + R + +++++ K + + + + + +
Sbjct: 265 ARQGSRTPSAAVAQLLAAEREQELSDMATLRAFAGNVVKIRDELTALLHRLRAEGRS 321
>3im6_A Cardiac Ca2+ release channel; ryanodine receptor 2, calcium release
channel, ION channel, arrhythmia, CPVT, ARVD2, ARVC2,
disease mutation; 1.70A {Mus musculus} PDB: 3im5_A
3im7_A 3qr5_A 3ila_A 3hsm_A
Length = 217
Score = 34.4 bits (78), Expect = 0.018
Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 6/111 (5%)
Query: 6 SKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYG-TGSGQQSVTGTEVKEDVNSHWIIKA 64
++ ++ + G + L + + L T V E W I
Sbjct: 105 AQGGGHRTLLYGHAILLRHSYSGMYLCCLSTSRSSTDKLAFDVGLQEDTTGEACWWTI-H 163
Query: 65 PTGKTCKRGEPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSAT 115
P K GE ++ D + L ++ + LH S + + V A T
Sbjct: 164 PASKQRSEGEKVRVGDDLILVSMSSERYLH----LSYGNSSWHVDAAFQQT 210
>2zkr_n 60S ribosomal protein L5; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 297
Score = 34.3 bits (78), Expect = 0.019
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K+ + +KK KK+ KKK+ + K +KK + +KK +R +E
Sbjct: 241 KKAHAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQE 292
Score = 32.3 bits (73), Expect = 0.083
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+E E+K KK+ KKK+ K +KK + +KK + +++
Sbjct: 248 RENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERA 294
Score = 31.6 bits (71), Expect = 0.16
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ +KK KK+ KKK + K +KK + +KK + R E
Sbjct: 248 RENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQERAAE 296
Score = 30.4 bits (68), Expect = 0.36
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKK-NKKKKKEKKKKKKKKKKKKKKK 207
R +KK +K+ KKK+ + K + +KK++ +KK + +++
Sbjct: 248 RENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293
Score = 30.0 bits (67), Expect = 0.50
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
++ +KK KK+ KKK+ + K +KK + +KK +
Sbjct: 244 HAAIRENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRA 290
Score = 29.6 bits (66), Expect = 0.75
Identities = 10/46 (21%), Positives = 25/46 (54%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
++ +++ KK+ KKK+ + K +KK + +KK + +++
Sbjct: 248 RENPVYEKKPKKEVKKKRWNRPKMSLAQKKDRVAQKKASFLRAQER 293
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 34.1 bits (78), Expect = 0.025
Identities = 8/43 (18%), Positives = 28/43 (65%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
K+E + +KK++++++ + + + K++ ++++K +K K+
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKEN 431
Score = 32.6 bits (74), Expect = 0.093
Identities = 8/43 (18%), Positives = 28/43 (65%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ K++ + + KK+++E++ + + + K+++++++K KE
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKEN 431
Score = 32.2 bits (73), Expect = 0.11
Identities = 7/39 (17%), Positives = 26/39 (66%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ K++N+ +K+K++++++ + + + K++++ RK
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRK 427
Score = 32.2 bits (73), Expect = 0.12
Identities = 9/40 (22%), Positives = 27/40 (67%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
++ + +KKKEE++++ + + + K +++++ K +K K+
Sbjct: 392 KQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKEN 431
Score = 31.4 bits (71), Expect = 0.20
Identities = 8/41 (19%), Positives = 26/41 (63%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
+ + KKK+EE+++ + + + K+ ++++++ +K K+
Sbjct: 391 AKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAKEN 431
Score = 31.4 bits (71), Expect = 0.21
Identities = 7/37 (18%), Positives = 25/37 (67%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKE 192
N +++ ++E++ + E + K+++++++K +K K+
Sbjct: 395 NENMRKKKEEEERRARMEAQLKEQRERERKMRKAKEN 431
Score = 30.6 bits (69), Expect = 0.34
Identities = 7/41 (17%), Positives = 28/41 (68%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ K++ +N +KKKE+++++ + + + K++++++ ++
Sbjct: 389 SEAKQENENMRKKKEEEERRARMEAQLKEQRERERKMRKAK 429
>2zkr_w 60S ribosomal protein L7; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 270
Score = 34.1 bits (77), Expect = 0.026
Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 145 MEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKK-----KKKKKKNKKKKKEKKKKKKK 199
ME + ++K K KKK KKK++ + K ++ +KK
Sbjct: 1 MEAVPEKKKKVATVPGTLKKKVPAGPKTLKKKVPAVPETLKKKRRNFAELKVKRLRKKFA 60
Query: 200 KKKKKKKKKKKKIMRKEE 217
K +K ++K + +
Sbjct: 61 LKTLRKARRKLIYEKAKH 78
Score = 33.7 bits (76), Expect = 0.036
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++RR + K + +KK K +K ++K +K K K+ ++ + + ++ R
Sbjct: 42 KKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARK 99
Score = 32.1 bits (72), Expect = 0.096
Identities = 11/64 (17%), Positives = 30/64 (46%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
V + +++R+ + K ++ +KK K + ++K +K K K+ ++ + + M
Sbjct: 35 AVPETLKKKRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMA 94
Query: 215 KEEN 218
+
Sbjct: 95 RMAR 98
Score = 29.5 bits (65), Expect = 0.80
Identities = 10/58 (17%), Positives = 24/58 (41%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ K+ +KK K +K ++K K K K+ ++ + + + + +K
Sbjct: 49 ELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVP 106
Score = 29.1 bits (64), Expect = 1.1
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
RR + K K+ KK K +K + K ++ K K+ ++ + + + M ++
Sbjct: 43 KRRNFAELKVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAG 101
Score = 27.5 bits (60), Expect = 3.1
Identities = 9/58 (15%), Positives = 25/58 (43%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ +R ++K + +K ++K +K K KE ++ + + + + +K
Sbjct: 51 KVKRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAE 108
Score = 26.4 bits (57), Expect = 7.5
Identities = 12/58 (20%), Positives = 25/58 (43%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+R RKK K K ++K +K K+ K+ + + + + + +K + E
Sbjct: 53 KRLRKKFALKTLRKARRKLIYEKAKHYHKEYRQMYRTEIRMARMARKAGNFYVPAEPK 110
>1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap
DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A
{Homo sapiens} SCOP: a.60.7.1 c.120.1.2
Length = 379
Score = 33.7 bits (77), Expect = 0.032
Identities = 11/36 (30%), Positives = 14/36 (38%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K K+K + K KKK K K K+ K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 32.2 bits (73), Expect = 0.11
Identities = 10/36 (27%), Positives = 14/36 (38%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K K K+ + + KKK K K K+ K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
Score = 29.5 bits (66), Expect = 0.84
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKK 190
V S ++KE + K KKK K K K+ K
Sbjct: 344 KVTGSLSSAKRKEPEPKGSTKKKAKTGAAGKFKRGK 379
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning,
protein-DNA complex, heilx-turn- helix motif,
transcription factor; HET: BRU; 2.20A {Escherichia coli}
SCOP: a.4.14.1
Length = 178
Score = 32.9 bits (75), Expect = 0.036
Identities = 6/48 (12%), Positives = 15/48 (31%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
R EK + + + + + + + + K K+K
Sbjct: 131 REFLDEKGRDPNTVDAFNGQTDAERDAEAGDGQDGEDGDQDGKDAKEK 178
Score = 32.5 bits (74), Expect = 0.053
Identities = 5/48 (10%), Positives = 16/48 (33%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
R ++K ++ + + + + + + K K+K
Sbjct: 131 REFLDEKGRDPNTVDAFNGQTDAERDAEAGDGQDGEDGDQDGKDAKEK 178
Score = 27.1 bits (60), Expect = 3.0
Identities = 4/55 (7%), Positives = 17/55 (30%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R + ++ +K + + ++ + + + + KE+
Sbjct: 124 RGTVKLLREFLDEKGRDPNTVDAFNGQTDAERDAEAGDGQDGEDGDQDGKDAKEK 178
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining,
protein/nucleic acid complex, alpha/beta domain, beta
barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2
c.62.1.4 PDB: 1jeq_B*
Length = 565
Score = 33.3 bits (75), Expect = 0.049
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 137 HNPVL---WKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEK 193
NP ++ + +HP +P+ + E K + K K E
Sbjct: 483 PNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIEA 542
Query: 194 KKKKKKKKKKKKKKKKKK 211
KKK + ++ + +
Sbjct: 543 KKKDQVTAQEIFQDNHED 560
Score = 27.5 bits (60), Expect = 3.9
Identities = 8/51 (15%), Positives = 16/51 (31%)
Query: 149 FIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
++P V + K K + KKK + + + + K
Sbjct: 515 MLNPPAEVTTKSQIPLSKIKTLFPLIEAKKKDQVTAQEIFQDNHEDGPTAK 565
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear
protein complex, chromatin remodeling nucleosome
remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Length = 374
Score = 33.2 bits (75), Expect = 0.059
Identities = 11/62 (17%), Positives = 23/62 (37%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A K++ KKE++ K+ +++ +KE + KK K + +
Sbjct: 298 AGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLV 357
Query: 217 EN 218
Sbjct: 358 AE 359
Score = 32.8 bits (74), Expect = 0.061
Identities = 10/61 (16%), Positives = 21/61 (34%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K KK++E K+ +++ + +K+ + KK K + E
Sbjct: 300 IVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAE 359
Query: 218 N 218
Sbjct: 360 K 360
Score = 32.8 bits (74), Expect = 0.065
Identities = 7/64 (10%), Positives = 29/64 (45%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
+ + + +K+ + K+ +++ + N+K+ + + KK K + ++++
Sbjct: 298 AGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLV 357
Query: 214 RKEE 217
++
Sbjct: 358 AEKI 361
Score = 32.8 bits (74), Expect = 0.075
Identities = 10/61 (16%), Positives = 26/61 (42%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
A R +++ E K+ ++ + +K+N + KK K + ++ + + +
Sbjct: 305 ATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEKIPEN 364
Query: 217 E 217
E
Sbjct: 365 E 365
Score = 32.5 bits (73), Expect = 0.083
Identities = 8/64 (12%), Positives = 25/64 (39%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
V + + R K++ + ++ +++ + K+ + KK K + ++ +
Sbjct: 299 GIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVA 358
Query: 214 RKEE 217
K
Sbjct: 359 EKIP 362
Score = 32.5 bits (73), Expect = 0.089
Identities = 9/64 (14%), Positives = 25/64 (39%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
+ + + KK+ E K+ +++ + +K+ + KK K + + +
Sbjct: 297 NAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQL 356
Query: 214 RKEE 217
E+
Sbjct: 357 VAEK 360
Score = 31.7 bits (71), Expect = 0.16
Identities = 11/71 (15%), Positives = 26/71 (36%)
Query: 141 LWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
L + +E F + R +K+++ K +++ + +K E KK K +
Sbjct: 288 LLQCLEKEFNAGIVLDDATKDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIED 347
Query: 201 KKKKKKKKKKK 211
++
Sbjct: 348 TSNVGTEQLVA 358
Score = 27.8 bits (61), Expect = 2.6
Identities = 7/58 (12%), Positives = 16/58 (27%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
D R + ++E + KK K ++ +K + +
Sbjct: 313 EDENGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEKIPENETTHHH 370
Score = 27.1 bits (59), Expect = 5.5
Identities = 7/55 (12%), Positives = 18/55 (32%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+ + EK+ + + KK K + N ++ +K + +
Sbjct: 316 NGKRIREEFADQTANEKENVDGVESKKAKIEDTSNVGTEQLVAEKIPENETTHHH 370
>3bbn_U Ribosomal protein S21; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea}
Length = 190
Score = 32.5 bits (73), Expect = 0.060
Identities = 19/157 (12%), Positives = 55/157 (35%), Gaps = 12/157 (7%)
Query: 74 EPIKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVS 133
P + + + N + F + S V+ + ++ S
Sbjct: 23 PPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNHSEPLSAELASVICPS 82
Query: 134 WPDHNPVLWKT--MEGIFIHPSDPVANSHRRRRKK--------EKKKKE--EKKKKKKKK 181
N + +++ + + ++P R R++ E K++ E + +K+
Sbjct: 83 LAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKR 142
Query: 182 KKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K ++ K+ + ++ + + + K+ K ++N
Sbjct: 143 KTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDN 179
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION
channel, membrane PROT malignant hyperthermia, cardiac
arrhythmia; 2.50A {Oryctolagus cuniculus}
Length = 559
Score = 33.3 bits (75), Expect = 0.060
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Query: 6 SKARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAP 65
YVT G V++L + L G V S W ++
Sbjct: 206 CSCCEEGYVTGGHVLRLFHGHMDECLTISAADSDDQRRLVYYEGGAVCTHARSLWRLEPL 265
Query: 66 TGKTCKRGEPIKCNDIIRLTHTTTNKNL 93
G ++ +R+ H TT + L
Sbjct: 266 RISW--SGSHLRWGQPLRIRHVTTGRYL 291
Score = 30.2 bits (67), Expect = 0.47
Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 11/87 (12%)
Query: 9 RNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGSGQQSVTGTEVKEDVNSHWIIKAPTGK 68
+ V G + L++V LH +G Q + + + W + P
Sbjct: 158 SEGEKVRVGDDLILVSVSSERYLHLS---TASGELQVDAS------FMQTLWNMN-PICS 207
Query: 69 TCKRGEPIKCNDIIRLTHTTTNKNLHS 95
C+ G + ++RL H ++ L
Sbjct: 208 CCEEG-YVTGGHVLRLFHGHMDECLTI 233
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 32.9 bits (75), Expect = 0.061
Identities = 11/44 (25%), Positives = 26/44 (59%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
++RR+ E+K + K K+K +K++ K++K+E+ + +
Sbjct: 384 QKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
Score = 31.4 bits (71), Expect = 0.19
Identities = 8/44 (18%), Positives = 25/44 (56%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+RR +EK ++ + K+K +K++ + ++K+++ + +
Sbjct: 384 QKRRETEEKMRRAKLAKEKAEKERLEKQQKREQLIDMNAEGDET 427
>3bn0_A 30S ribosomal protein S16; ribonucleoprotein, ribosome; 2.00A
{Aquifex aeolicus} SCOP: d.27.1.1
Length = 112
Score = 31.5 bits (72), Expect = 0.063
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K+ + + K+ +K++ KK K +
Sbjct: 80 KEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 31.1 bits (71), Expect = 0.080
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
S K+ + + K+ +K++ KK K +
Sbjct: 65 LSHRAKAI--LWNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 30.4 bits (69), Expect = 0.15
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K+ + + K+ +K++ KK K +
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGEA 111
Score = 26.5 bits (59), Expect = 3.6
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K+ E + K+ +K++ K + E
Sbjct: 74 WNHGILKEVVPEGYEMKRVGDYYVFEKRESKKSKGGE 110
>3iz5_Q 60S ribosomal protein L5 (L18P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Q
Length = 304
Score = 32.7 bits (74), Expect = 0.078
Identities = 10/59 (16%), Positives = 19/59 (32%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
H R K KK+ K+ K +++K ++ +EE+
Sbjct: 244 HAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAGADDDDEEED 302
Score = 30.4 bits (68), Expect = 0.45
Identities = 9/53 (16%), Positives = 17/53 (32%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
KK K KK+ K+ KK +++K ++ +
Sbjct: 241 KKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVERLNALNSSAG 293
Score = 27.3 bits (60), Expect = 3.5
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 4/48 (8%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK----KKKKKIMRK 215
E KK + K KK+ K+ KK ++K ++ +
Sbjct: 237 ESLYKKVHAAIRADPTMAKSTKKEPATHKRYNLKKLTYEQRKASLVER 284
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 32.6 bits (74), Expect = 0.086
Identities = 7/56 (12%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKK--KKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K + +++ +++ ++KK ++ +++ K K + M++E+
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLAEEENKAKAEASSGDHPTDTEMKEEQK 322
>1q14_A HST2 protein; histone deacetylase, hydrolase; 2.50A {Saccharomyces
cerevisiae} SCOP: c.31.1.5
Length = 361
Score = 32.3 bits (73), Expect = 0.091
Identities = 9/75 (12%), Positives = 23/75 (30%)
Query: 134 WPDHNPVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEK 193
W + + G+ + + + + E + KK KK ++ ++
Sbjct: 287 WQEDFEKILTAQGGMGDNSKEQLLEIVHDLENLSLDQSEHESADKKDKKLQRLNGHDSDE 346
Query: 194 KKKKKKKKKKKKKKK 208
+K K+
Sbjct: 347 DGASNSSSSQKAAKE 361
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 32.3 bits (74), Expect = 0.10
Identities = 3/41 (7%), Positives = 21/41 (51%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+E ++++K + + + ++++ K +++++ +
Sbjct: 729 QESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 32.3 bits (74), Expect = 0.13
Identities = 3/43 (6%), Positives = 18/43 (41%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
R ++ +++K + + ++ K +++++ +
Sbjct: 727 RFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 32.0 bits (73), Expect = 0.15
Identities = 3/43 (6%), Positives = 21/43 (48%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
R +E +++ + + ++ +++ + K +++++ +
Sbjct: 727 RFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 31.2 bits (71), Expect = 0.26
Identities = 4/42 (9%), Positives = 18/42 (42%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
++ +E +K + + ++E K +++++ +
Sbjct: 728 FQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
Score = 30.8 bits (70), Expect = 0.32
Identities = 4/43 (9%), Positives = 18/43 (41%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
R + +E++K + + + + K +++++ +
Sbjct: 727 RFQESRERRKIAIVRDFDLVLEHDEEEFDLTIKLVEEREELRT 769
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 32.2 bits (74), Expect = 0.11
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 189 KKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K KKK + K+K+K + M+KE
Sbjct: 21 DMAAKMSKKKAGRGGGKRKEKLENMKKEME 50
Score = 31.1 bits (71), Expect = 0.33
Identities = 9/41 (21%), Positives = 16/41 (39%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
V K ++K + K+K+K + KKE +
Sbjct: 12 VELGPGPSGDMAAKMSKKKAGRGGGKRKEKLENMKKEMEIN 52
>3u5c_G RP9, S10, YS4, 40S ribosomal protein S6-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3j16_C 3u5g_G
Length = 236
Score = 31.6 bits (71), Expect = 0.13
Identities = 9/55 (16%), Positives = 26/55 (47%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
P +R ++ K + + +++ + + K+ E+K +K + +K++ K
Sbjct: 181 PQRLQRKRHQRALKVRNAQAQREAAAEYAQLLAKRLSERKAEKAEIRKRRASSLK 235
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 31.8 bits (73), Expect = 0.15
Identities = 12/31 (38%), Positives = 12/31 (38%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK 195
KE K KK K K K KK K K
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 30.7 bits (70), Expect = 0.41
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 5/53 (9%)
Query: 163 RRKKEKKKKEEKKKKKKKK-----KKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K + +E KK K+ K K+ K+ +K+K +KK+ +K
Sbjct: 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEK 93
Score = 29.1 bits (66), Expect = 1.1
Identities = 10/55 (18%), Positives = 27/55 (49%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
++ +K+ ++ K K+ K +K+K +KK+ +K+ + K + + +
Sbjct: 53 NKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQ 107
Score = 28.7 bits (65), Expect = 1.5
Identities = 11/34 (32%), Positives = 12/34 (35%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K+ K KK K K K KK K K
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGS 478
Score = 28.7 bits (65), Expect = 1.6
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + ++ KK +K+ K+ K K+ K +K+K +KK + ++E
Sbjct: 41 EWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEA 95
Score = 28.7 bits (65), Expect = 1.7
Identities = 10/36 (27%), Positives = 12/36 (33%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+ K KK K K K KK K +
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGKNGSRH 480
Score = 28.0 bits (63), Expect = 2.4
Identities = 10/38 (26%), Positives = 14/38 (36%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+ + K+ K KK K + K KK K K
Sbjct: 438 EPEFIPYIKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 28.0 bits (63), Expect = 2.8
Identities = 10/31 (32%), Positives = 13/31 (41%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
++ K KK K K KN K+ K K
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 28.0 bits (63), Expect = 2.9
Identities = 10/31 (32%), Positives = 12/31 (38%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K+ K KK + K K KK K K
Sbjct: 445 IKELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
Score = 26.8 bits (60), Expect = 7.1
Identities = 10/30 (33%), Positives = 13/30 (43%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEK 193
++ K KK K K K + KK K K
Sbjct: 446 KELPKNTTSVKKAKGKNPKNTTSVKKAKGK 475
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 31.8 bits (72), Expect = 0.16
Identities = 3/34 (8%), Positives = 14/34 (41%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
++ ++ + + + K K+ +K ++
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVI 37
Score = 31.1 bits (70), Expect = 0.25
Identities = 4/35 (11%), Positives = 13/35 (37%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
++ ++ + + K K+ +K I+
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVII 38
Score = 30.7 bits (69), Expect = 0.34
Identities = 5/36 (13%), Positives = 14/36 (38%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
++ ++ +N+ K K+ +K I+
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVIII 39
Score = 29.5 bits (66), Expect = 0.91
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKK 191
+ RR ++ + + + K K+ +K
Sbjct: 2 ASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVS 34
Score = 29.2 bits (65), Expect = 1.00
Identities = 4/37 (10%), Positives = 13/37 (35%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
++ ++ + + K K+ +K I+
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNVIIII 40
Score = 29.2 bits (65), Expect = 1.0
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKK 191
A++ R + + + K K+ K
Sbjct: 2 ASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 29.2 bits (65), Expect = 1.2
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
++ ++ + + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.8 bits (64), Expect = 1.3
Identities = 3/33 (9%), Positives = 13/33 (39%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
++ ++ + ++ + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.8 bits (64), Expect = 1.5
Identities = 2/33 (6%), Positives = 13/33 (39%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
++ ++ + + + + + K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.4 bits (63), Expect = 1.7
Identities = 3/33 (9%), Positives = 13/33 (39%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
++ ++ + + ++ K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.4 bits (63), Expect = 1.7
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+ ++ + + + N K ++ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.4 bits (63), Expect = 1.9
Identities = 6/34 (17%), Positives = 14/34 (41%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKK 194
RR +E + ++ + K K++ +K
Sbjct: 3 SNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 28.0 bits (62), Expect = 2.6
Identities = 3/33 (9%), Positives = 12/33 (36%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
++ ++ + + K K+ +K+
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 27.6 bits (61), Expect = 3.1
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
++ +E + + + KN K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 27.2 bits (60), Expect = 4.1
Identities = 3/33 (9%), Positives = 10/33 (30%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
+ ++ + + K K+ +K
Sbjct: 4 NRRYQEPQNRDISSRSNGKNPFKRSTGRKVSNV 36
Score = 26.8 bits (59), Expect = 5.5
Identities = 4/34 (11%), Positives = 10/34 (29%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKK 185
S+ + R + + K+ +K
Sbjct: 2 ASNRRYQEPQNRDISSRSNGKNPFKRSTGRKVSN 35
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo
sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Length = 323
Score = 31.6 bits (71), Expect = 0.16
Identities = 13/55 (23%), Positives = 22/55 (40%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+K E + EE K+K + + + KK+K + KK +EE
Sbjct: 260 KKYEPPRSEEVAVLKQKLDRCHSAELALNVITKKRKGYEDDDYVSKKSKHEEEEW 314
>4a17_M RPL5, 60S ribosomal protein L5; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_M 4a1c_M 4a1e_M
Length = 301
Score = 31.6 bits (71), Expect = 0.17
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
H RK ++ K KK K K+ KK K ++K + K K + +
Sbjct: 251 HAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
Score = 29.7 bits (66), Expect = 0.76
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ +K ++ K KK K + KK K ++K + K K ++ +
Sbjct: 251 HAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
Score = 27.7 bits (61), Expect = 3.1
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+ KK K K + KK K +K + + K + +
Sbjct: 259 ERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
Score = 26.6 bits (58), Expect = 7.8
Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK-----KKKKKKKKKKKIMRK 215
K E +K ++ K KKN K K++ KK K +K + K K + + +
Sbjct: 248 TKVHAEIRKNPERVKSTKKNDKPKRDHKKFYPTKLTAAQRKDRVKTKFQLALSQ 301
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_G
Length = 219
Score = 31.2 bits (70), Expect = 0.18
Identities = 11/56 (19%), Positives = 15/56 (26%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
HRR K K K +K K K + +K K +
Sbjct: 21 HRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTIT 76
Score = 28.5 bits (63), Expect = 1.4
Identities = 7/53 (13%), Positives = 13/53 (24%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
R ++ K K K +K + K K + +
Sbjct: 16 RSHTYHRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPHP 68
Score = 26.5 bits (58), Expect = 6.6
Identities = 7/53 (13%), Positives = 13/53 (24%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
S + + K K +K + K K + +K
Sbjct: 15 SRSHTYHRRGLWAIKAKHGGALPKAEKPAAIAEPKFYPADDVKPRTVSTRKPH 67
>3iz5_D 60S ribosomal protein L4 (L4P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_D
Length = 405
Score = 31.4 bits (70), Expect = 0.20
Identities = 11/49 (22%), Positives = 17/49 (34%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R+ + K +K+K K+ K +E K K K K
Sbjct: 341 RKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDS 389
Score = 31.0 bits (69), Expect = 0.30
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+K + + K +K+ K+ K ++ K K K K M + +
Sbjct: 338 GTARKMATLAEAARIKARKEKLDSKRTKLSPEEAAKVKAAGKAWYKTMISDSD 390
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 30.8 bits (69), Expect = 0.20
Identities = 15/60 (25%), Positives = 29/60 (48%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
V ++ R +E K++ +K K +KK KK + K +K + K ++ K K ++
Sbjct: 103 VRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKGPKIGGGGGKR 162
Score = 28.5 bits (63), Expect = 1.2
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ R ++ + K++ KK K + K KK E K +K + K ++ K
Sbjct: 96 KRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAK 151
Score = 27.7 bits (61), Expect = 2.1
Identities = 12/55 (21%), Positives = 28/55 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
++R +K + + ++ ++ K++ K K ++K KK + K +K + K R
Sbjct: 95 KKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRG 149
Score = 27.7 bits (61), Expect = 2.2
Identities = 12/56 (21%), Positives = 28/56 (50%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++K+ +K + ++ ++ K + KK + +KK KK + K +K + K +
Sbjct: 94 QKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRG 149
Score = 27.7 bits (61), Expect = 2.3
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R + E K++ KK K +K KK + K +K + K ++ K
Sbjct: 101 PEVRDAAREAALREIKERIKKTKDEKKAKKAEVAKSQKTQSKGGATQRGAKG 152
Score = 25.8 bits (56), Expect = 8.5
Identities = 12/58 (20%), Positives = 28/58 (48%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
RRR K+ + + +KK+++K + ++ ++ K++ KK K +K +
Sbjct: 73 RRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIKKTKDEKKAKK 130
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR
repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1
d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 31.6 bits (71), Expect = 0.21
Identities = 8/56 (14%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKK--KKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + ++K K+ ++ ++ KK ++ K++ K KK + + ++
Sbjct: 388 RLQISMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGT 443
Score = 30.0 bits (67), Expect = 0.55
Identities = 9/54 (16%), Positives = 23/54 (42%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+KK +E ++ ++ KK ++ K++ K KK + + ++
Sbjct: 392 SMCQKKAKEHNERDRRIYANMFKKFAEQDAKEEANKAMGKKTSEGVTNEKGTDS 445
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 30.8 bits (69), Expect = 0.21
Identities = 14/56 (25%), Positives = 24/56 (42%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ +R++ + +E KK K+ KK K K K+K K K ++ K
Sbjct: 101 RKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGK 156
Score = 30.0 bits (67), Expect = 0.33
Identities = 13/51 (25%), Positives = 22/51 (43%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R+ ++E+ + K+ KK K+ KK + K K+K K K
Sbjct: 100 VRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSA 150
Score = 29.6 bits (66), Expect = 0.44
Identities = 12/52 (23%), Positives = 19/52 (36%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R+ + ++ K+ KK K+ K K K K+K K K
Sbjct: 98 PEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVS 149
Score = 29.3 bits (65), Expect = 0.58
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
R ++ + +K + E+ + K+ KK + KK K K K+K K ++
Sbjct: 94 RNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAP 151
Score = 29.3 bits (65), Expect = 0.67
Identities = 12/55 (21%), Positives = 22/55 (40%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K+ +K + K ++++ + K KK K+ KK K K K +
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKP 145
Score = 28.9 bits (64), Expect = 0.92
Identities = 14/56 (25%), Positives = 21/56 (37%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
N RK ++++ K+ KK K+ K K K K+K K K
Sbjct: 93 KRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKV 148
Score = 28.1 bits (62), Expect = 1.5
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
R KE KK ++ KK K K ++K K K + K+
Sbjct: 108 AIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGGKR 157
Score = 28.1 bits (62), Expect = 1.5
Identities = 11/55 (20%), Positives = 25/55 (45%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
++ +K + + ++++ + K+ KK K+ KK K K K+ + K
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKP 145
Score = 28.1 bits (62), Expect = 1.6
Identities = 11/57 (19%), Positives = 28/57 (49%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+R ++ + ++ ++++ + K+ K K+ KK K K K+KI++ +
Sbjct: 91 MAKRNQKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVK 147
Score = 27.3 bits (60), Expect = 3.0
Identities = 14/62 (22%), Positives = 22/62 (35%)
Query: 150 IHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
P A + R ++ KK ++ KK K K K+K K K +
Sbjct: 96 QKPEVRKAQREQAIRAAKEAKKAKQASKKTAMAAAKAPTKAAPKQKIVKPVKVSAPRVGG 155
Query: 210 KK 211
K+
Sbjct: 156 KR 157
Score = 26.6 bits (58), Expect = 4.3
Identities = 13/79 (16%), Positives = 30/79 (37%)
Query: 140 VLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
+ W + +R R+ K ++ K+N+K + K ++++
Sbjct: 49 INWTVLYRRKHKKGQSEEIQKKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQA 108
Query: 200 KKKKKKKKKKKKIMRKEEN 218
+ K+ KK K+ +K
Sbjct: 109 IRAAKEAKKAKQASKKTAM 127
>2kqr_A Asparaginyl-tRNA synthetase, cytoplasmic; aminoacyl-tRNA
synthetase, ATP-binding, ligas nucleotide-binding,
protein biosynthesis; NMR {Brugia malayi}
Length = 113
Score = 30.0 bits (67), Expect = 0.21
Identities = 12/64 (18%), Positives = 24/64 (37%)
Query: 148 IFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ I S R ++ ++ + K KK K+ ++ K +K K +K +
Sbjct: 31 MIITKSSKGDFLIRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLEKDATEV 90
Query: 208 KKKK 211
K
Sbjct: 91 GVKA 94
Score = 28.4 bits (63), Expect = 0.77
Identities = 14/69 (20%), Positives = 27/69 (39%)
Query: 143 KTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+T+ I + R +K K+ E K KK K+ +++ + +K K +
Sbjct: 25 RTLYQAMIITKSSKGDFLIRTKKDGKQVWEAASKTALKKSWKRYEQEMLKNEKVAAKMLE 84
Query: 203 KKKKKKKKK 211
K + K
Sbjct: 85 KDATEVGVK 93
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor,
IP3-binding core, calcium channel,protein- ligand
complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus}
SCOP: a.118.22.1 b.42.6.1
Length = 381
Score = 31.4 bits (70), Expect = 0.22
Identities = 18/143 (12%), Positives = 44/143 (30%), Gaps = 11/143 (7%)
Query: 76 IKCNDIIRLTHTTTNKNLHSHHFSSPLSGAQEVSAYLSATRQTYGRPISGQYEIVTVSWP 135
+K D++RL H K L + SAT T + + + E+V
Sbjct: 11 LKGGDVVRLFHAEQEKFLTCDEHRKKQHVFLRTTGRQSATSATSSKAL-WEVEVV----- 64
Query: 136 DHNPVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK 195
H+P G + + H + + +++ + + + +
Sbjct: 65 QHDP-----CRGGAGYWNSLFRFKHLATGHYLAAEVDPDFEEECLEFQPSVDPDQDASRS 119
Query: 196 KKKKKKKKKKKKKKKKIMRKEEN 218
+ + ++K + +
Sbjct: 120 RLRNAQEKMVYSLVSVPEGNDIS 142
>2zjr_M 50S ribosomal protein L19; ribosome, large ribosomal subunit,
ribonucleoprotein, RNA-binding, rRNA-binding,
tRNA-binding, methylation; 2.91A {Deinococcus
radiodurans} SCOP: b.34.5.6 PDB: 1nwx_N* 1nwy_N* 1sm1_N*
1xbp_N* 2zjp_M* 2zjq_M 1nkw_N 3cf5_M* 3dll_M* 3pio_M*
3pip_M* 1pnu_N 1pny_N 1vor_Q 1vou_Q 1vow_Q 1voy_Q 1vp0_Q
Length = 166
Score = 30.5 bits (69), Expect = 0.23
Identities = 6/57 (10%), Positives = 18/57 (31%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R R K + K ++ + K + + K + + ++ + +
Sbjct: 108 RELRGKAARIKSDRSRVMKDAARAQQDKANASASQAAAAQADVTVISAAPEVAPETQ 164
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 31.2 bits (71), Expect = 0.26
Identities = 6/60 (10%), Positives = 17/60 (28%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
SD + ++ E + K + K+ + + + +K+
Sbjct: 133 SDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKL 192
Score = 29.3 bits (66), Expect = 1.0
Identities = 2/58 (3%), Positives = 14/58 (24%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++ + + K + K+ + + + + + +
Sbjct: 140 MKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYADMLKRVEPLRNELQKLEDDAK 197
>3u5e_D 60S ribosomal protein L5; translation, ribosome, ribosomal R
ribosomal protein, STM1, eukaryotic ribosome; 3.00A
{Saccharomyces cerevisiae} PDB: 3u5i_D 3izc_Q 3izs_Q
3o58_E 3o5h_E 3jyw_E 1s1i_E
Length = 297
Score = 30.8 bits (69), Expect = 0.28
Identities = 9/54 (16%), Positives = 24/54 (44%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ + K +KK K++ + KK ++ K K+++ + K + ++
Sbjct: 244 HEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
Score = 30.4 bits (68), Expect = 0.37
Identities = 8/49 (16%), Positives = 24/49 (48%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
A+ + +K+ K++ + KK ++ K +K+++ + K ++
Sbjct: 249 ADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
Score = 30.4 bits (68), Expect = 0.43
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
E+ + + K EKK K++ + KK ++ K+ ++E
Sbjct: 237 EDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEE 281
Score = 29.7 bits (66), Expect = 0.60
Identities = 8/57 (14%), Positives = 19/57 (33%), Gaps = 5/57 (8%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK-----KKKKKKKKKKKIMRKE 216
+ K +KK ++ E KK ++ K + + K + ++
Sbjct: 241 TSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
Score = 29.3 bits (65), Expect = 1.0
Identities = 9/49 (18%), Positives = 20/49 (40%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R K E+K K++ + K ++ K K+++ + K +
Sbjct: 248 RADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQ 296
Score = 28.1 bits (62), Expect = 2.3
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
E + + + K +KK K++ + KK ++ + KEE
Sbjct: 237 EDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEE 281
Score = 27.0 bits (59), Expect = 4.9
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ EKK +E+ + KK ++ K K+E+ + K ++
Sbjct: 253 FKPTEKKFTKEQYAAESKKYRQT-KLSKEERAARVAAKIAALAGQQ 297
Score = 26.2 bits (57), Expect = 8.0
Identities = 10/49 (20%), Positives = 21/49 (42%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+DP ++ KE+ E KK ++ K K++ + K ++
Sbjct: 249 ADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAALAGQQ 297
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 30.1 bits (67), Expect = 0.28
Identities = 16/51 (31%), Positives = 27/51 (52%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++ + EK +E K+KK +KK+ +K + K K KK + KK K+
Sbjct: 102 HKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVG 152
Score = 30.1 bits (67), Expect = 0.28
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
R K+KK + +KK+ +K + K+ K K+ + KK K+ K KK
Sbjct: 109 KAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 30.1 bits (67), Expect = 0.29
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ + +E K+K+ +KK+ +K K K KK + KK K+ K K
Sbjct: 102 HKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGK 157
Score = 29.7 bits (66), Expect = 0.40
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ ++ K+KK +KK+ +K + K K KK + KK K+ K KK
Sbjct: 108 EKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 29.0 bits (64), Expect = 0.67
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+K E +K + K+KK +K + +K + K K KK + KK K+ + K
Sbjct: 101 SHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAK 154
Score = 29.0 bits (64), Expect = 0.68
Identities = 15/55 (27%), Positives = 28/55 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ +K ++ ++KK +KK+ K + K+ K KK + KK K+ K +K
Sbjct: 104 KAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 28.6 bits (63), Expect = 0.99
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
++ + +K E K+KK +KK +K + K K KK + KK K+
Sbjct: 100 ASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPV 151
Score = 28.6 bits (63), Expect = 1.0
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
A + + R+ ++KK + +KK+ +K + K +K + KK K+ K KK
Sbjct: 105 AEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPVGAKGGKK 158
Score = 28.2 bits (62), Expect = 1.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+ KK + EK ++ K+KK + +KK+ +K + K K KK + KK +
Sbjct: 96 KNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQPV 151
Score = 27.4 bits (60), Expect = 2.3
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R+K +K + +K ++ K KK +KK+ +K + K K KK K+
Sbjct: 93 NRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKT 147
Score = 27.1 bits (59), Expect = 3.4
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
RR+ KK E +K ++ K+KK +K++ +K + K K KK + K+
Sbjct: 94 RRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQ 149
Score = 27.1 bits (59), Expect = 3.5
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
RRK ++ + +K ++ K+ K EKK+ +K + K K KK +K +
Sbjct: 93 NRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTK 148
Score = 26.7 bits (58), Expect = 4.7
Identities = 12/57 (21%), Positives = 29/57 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
RR+ + K+ + +K ++ K+K ++K+ +K + K K KK + + ++
Sbjct: 93 NRRKNLDASHKKAEAEKAVRELKQKKANDIEKKRADRKLQGKDVKAAKKAETKKTKQ 149
>2qag_C Septin-7; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 418
Score = 30.9 bits (69), Expect = 0.29
Identities = 12/52 (23%), Positives = 31/52 (59%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ ++ E + KE ++K+++ + +K N + ++ +++ + +K KKK KI
Sbjct: 366 QMKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGKI 417
Score = 27.9 bits (61), Expect = 2.5
Identities = 10/50 (20%), Positives = 28/50 (56%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
++ + + K+ EEK+++ + +K +++ +++ + +K KKK K
Sbjct: 367 MKKNLEAQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGK 416
Score = 26.3 bits (57), Expect = 8.7
Identities = 9/44 (20%), Positives = 23/44 (52%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
H+ +K ++ ++EK + +++ + + + +K KKK K
Sbjct: 373 AQHKELEEKRRQFEDEKANWEAQQRILEQQNSSRTLEKNKKKGK 416
>3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F
1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F
2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F*
2vho_F ...
Length = 135
Score = 30.0 bits (68), Expect = 0.31
Identities = 4/45 (8%), Positives = 20/45 (44%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
R K + K K +++++++ + + ++++++
Sbjct: 91 RTKHAVTEASPMVKAKDERRERRDDFANETADDAEAGDSEEEEEE 135
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga
maritima} PDB: 2gaj_A*
Length = 633
Score = 30.6 bits (70), Expect = 0.36
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
E K+KK + K+ + + ++KK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 30.6 bits (70), Expect = 0.37
Identities = 9/41 (21%), Positives = 17/41 (41%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K+KK + + KE + + ++KK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKF 239
Score = 30.2 bits (69), Expect = 0.54
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+ + K+KK + K + E ++KK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 29.1 bits (66), Expect = 1.1
Identities = 8/42 (19%), Positives = 15/42 (35%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ K+KK K+ + + ++KK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
Score = 28.7 bits (65), Expect = 1.8
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ + K+KK + + + ++ ++KK KK
Sbjct: 199 DGLTAEIDVKEKKFFDAETLKEIQSIDELVVEEKKVSVKKFA 240
>1v3y_A Peptide deformylase; protein synthesis, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, hydrolase; 1.81A {Thermus thermophilus} SCOP:
d.167.1.1
Length = 192
Score = 29.9 bits (68), Expect = 0.49
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
K++ + + + + +KE + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 28.7 bits (65), Expect = 1.2
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
K++ + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.9 bits (63), Expect = 1.8
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 182 KKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K++ + + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.9 bits (63), Expect = 1.9
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K++ + + E + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.5 bits (62), Expect = 2.5
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
K++ + + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.5 bits (62), Expect = 2.5
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K++ + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.5 bits (62), Expect = 2.5
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K++ + + + + +K+ + K + +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.5 bits (62), Expect = 2.6
Identities = 2/29 (6%), Positives = 13/29 (44%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
K++ + + + + + + + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.5 bits (62), Expect = 2.7
Identities = 3/29 (10%), Positives = 14/29 (48%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K++ + + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 27.2 bits (61), Expect = 3.2
Identities = 3/31 (9%), Positives = 14/31 (45%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKK 196
K K++ + + + + +K + ++ +
Sbjct: 161 KPKREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 4.4
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K++ + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.8 bits (60), Expect = 5.1
Identities = 4/29 (13%), Positives = 14/29 (48%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
K++ + N+ + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.4 bits (59), Expect = 5.9
Identities = 3/28 (10%), Positives = 12/28 (42%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKK 188
R + + + + +K+ + K+ +
Sbjct: 164 REAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.4 bits (59), Expect = 6.5
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKK 189
+R E + E + +K+ + K +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.4 bits (59), Expect = 6.5
Identities = 3/29 (10%), Positives = 13/29 (44%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKK 191
+R+ + + + +K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.4 bits (59), Expect = 6.6
Identities = 4/29 (13%), Positives = 13/29 (44%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
K+E + + + + K+ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
Score = 26.0 bits (58), Expect = 8.1
Identities = 2/29 (6%), Positives = 13/29 (44%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
K++ + + + +++ + K+ +
Sbjct: 163 KREAFLEANRAELVRFQKEARALLKELSQ 191
>2xzm_Y RPS6E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_Y
Length = 293
Score = 30.2 bits (67), Expect = 0.50
Identities = 12/56 (21%), Positives = 23/56 (41%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
P ++ K EK ++ K K++ +K + KK++ K + KK
Sbjct: 185 PERILRKKVYKAEKTQRYVKTNAAKEEYEKFLSEWKKQRAAKAHAASAPVVEAPKK 240
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 30.0 bits (67), Expect = 0.53
Identities = 9/59 (15%), Positives = 25/59 (42%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
++ K+E E + + + K K+ K ++++ KK+ +++I +
Sbjct: 113 SHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKAAVK 171
Score = 27.7 bits (61), Expect = 2.9
Identities = 8/72 (11%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEK-----KKKKKKKKKKKKK 206
+ +K +++ + + + + +K KE ++++ KK+ +
Sbjct: 103 VQKYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQ 162
Query: 207 KKKKKIMRKEEN 218
++ +K K +
Sbjct: 163 REIEKAAVKSKK 174
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L*
1s1h_L* 2zkq_l 3iz6_L
Length = 145
Score = 29.3 bits (65), Expect = 0.55
Identities = 11/59 (18%), Positives = 20/59 (33%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
A R R+ + + KK+ K + K +K + K+ +RK
Sbjct: 12 ARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRK 70
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F
alternative rescue factor, ARFB, release factor, rescue
of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Length = 140
Score = 29.0 bits (65), Expect = 0.63
Identities = 7/47 (14%), Positives = 20/47 (42%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
R ++ E+K ++ + + +++ K +K K + K +
Sbjct: 90 RLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVR 136
Score = 29.0 bits (65), Expect = 0.71
Identities = 9/49 (18%), Positives = 19/49 (38%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
R K+ +KK ++ + K++ K +K K + K +
Sbjct: 88 LARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVR 136
Score = 28.6 bits (64), Expect = 0.95
Identities = 9/49 (18%), Positives = 21/49 (42%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
R K+ +KK ++ + + K+++ K +K K + K +
Sbjct: 88 LARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVR 136
Score = 28.2 bits (63), Expect = 1.3
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
R + K+ +KK ++ + + K+++ K +K K
Sbjct: 81 ELNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKA 130
Score = 27.8 bits (62), Expect = 1.9
Identities = 8/58 (13%), Positives = 23/58 (39%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ ++ + K+ +KK + + + K+++ K +K K + K +
Sbjct: 80 QELNREAALARLVAMIKELTTEKKARRPTRPTRASKERRLASKAQKSSVKAMRGKVRS 137
Score = 26.7 bits (59), Expect = 4.4
Identities = 10/73 (13%), Positives = 25/73 (34%)
Query: 143 KTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
I + + R +E ++ + K+ +KK + + + K+
Sbjct: 57 LAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTTEKKARRPTRPTRASKE 116
Query: 203 KKKKKKKKKIMRK 215
++ K +K K
Sbjct: 117 RRLASKAQKSSVK 129
>2lgz_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase
subunit STT3; catalytic domain, oligosaccharyl
transferase; NMR {Saccharomyces cerevisiae}
Length = 273
Score = 29.8 bits (66), Expect = 0.64
Identities = 5/37 (13%), Positives = 16/37 (43%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
+ KK + + + + + K ++ K+ + +R
Sbjct: 236 QLKKDDAQGRTLRDVGELTRSSTKTRRSIKRPELGLR 272
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2;
I-BAR, protein binding; 2.25A {Mus musculus}
Length = 222
Score = 29.4 bits (65), Expect = 0.65
Identities = 5/51 (9%), Positives = 22/51 (43%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
+ + + K + + + +++ EK + + ++K+ K +++
Sbjct: 107 EKNTKLDMQFIKDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMK 157
Score = 29.4 bits (65), Expect = 0.71
Identities = 7/47 (14%), Positives = 22/47 (46%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
K + + + + + N +K + + ++K+ K ++ K+ + R
Sbjct: 118 KDSCQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLH 164
Score = 27.5 bits (60), Expect = 3.3
Identities = 7/49 (14%), Positives = 22/49 (44%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ + E + + +K ++ + E+K+ K ++ K+ + M+
Sbjct: 121 CQHYEIEYRHRAANLEKCMSELWRMERKRDKNAREMKESVNRLHAQMQA 169
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 427
Score = 29.7 bits (66), Expect = 0.68
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
++K E KKK + K++K + + + + + K+ K+KK
Sbjct: 377 DEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
Score = 27.8 bits (61), Expect = 2.7
Identities = 11/53 (20%), Positives = 25/53 (47%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
H+ +KK + KK+ + K++K + + + + + K+ K+KK
Sbjct: 374 LHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAGGSQTLKRDKEKK 426
Score = 27.4 bits (60), Expect = 4.4
Identities = 14/76 (18%), Positives = 37/76 (48%)
Query: 143 KTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+E + +DP + + E K+ E + +KK+++ + ++ K+K+ + K+
Sbjct: 301 CKLEEMGFKDTDPDSKPFSLQETYEAKRNEFLGELQKKEEEMRQMFVQRVKEKEAELKEA 360
Query: 203 KKKKKKKKKIMRKEEN 218
+K+ +K ++K
Sbjct: 361 EKELHEKFDRLKKLHQ 376
Score = 26.6 bits (58), Expect = 6.7
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ +KE +K ++ KK + +KKK + KKK + K++K + + +
Sbjct: 358 KEAEKELHEKFDRLKKLHQDEKKKLEDKKKSLDDEVNAFKQRKTAAELLQSQGSQAG 414
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 28.9 bits (64), Expect = 0.72
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ + K +EEK K K+KKK + +K EK K + K K++ K +K
Sbjct: 97 KPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQK 149
Score = 28.5 bits (63), Expect = 1.0
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
R+ ++K + K+KKK +K + +K K + K K++ K +K+
Sbjct: 98 PEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVAAT 153
Score = 28.2 bits (62), Expect = 1.4
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ RK +++K + K+KKK +K K +K + + K K++ K
Sbjct: 93 RRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAF 147
Score = 28.2 bits (62), Expect = 1.5
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
R + + +K E+K K K+KKK K +K +K K + K K++ K
Sbjct: 94 RSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAK 144
Score = 27.8 bits (61), Expect = 2.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ +K ++++ K K+KKK +K +K +K K + K K++ K
Sbjct: 97 KPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAF 147
Score = 27.8 bits (61), Expect = 2.0
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
RR K + +K +++K K K+KK +K K +K K + K K++
Sbjct: 92 ERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQ 142
Score = 27.0 bits (59), Expect = 3.2
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K+ + K E +K +++K K NK+KKK +K +K +K K + K +++
Sbjct: 91 KERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQA 143
Score = 27.0 bits (59), Expect = 3.3
Identities = 14/54 (25%), Positives = 26/54 (48%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
+ R+++ K +EKKK +K +K + K + K K++ K +K R
Sbjct: 102 KANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKGAFQKVAATSR 155
Score = 26.6 bits (58), Expect = 4.4
Identities = 13/55 (23%), Positives = 28/55 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ RR + + ++ +++K K K+K K +K +K +K K + K K+ +
Sbjct: 91 KERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFSKQQAKG 145
Score = 26.2 bits (57), Expect = 7.4
Identities = 14/52 (26%), Positives = 24/52 (46%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
K++ K + +K +++ K KEKKK +K +K +K K K
Sbjct: 88 DLIKERRSLKPEVRKANREEKLKANKEKKKAEKAARKAEKAKSAGTQSSKFS 139
>2zfn_A RTT109, regulator of TY1 transposition protein 109; histone H3
lysine 56 acetylation, DNA damage, DNA repair, NU
transcription; HET: ALY ACO; 1.90A {Saccharomyces
cerevisiae} PDB: 2rim_A 3q33_A* 3q35_A* 3q66_C* 3q68_C*
3d35_A* 3qm0_A* 3cz7_A*
Length = 460
Score = 29.8 bits (66), Expect = 0.72
Identities = 9/75 (12%), Positives = 22/75 (29%)
Query: 141 LWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
+ K + G + + R + + K++ + + +
Sbjct: 385 IKKYITGEEYDTEEGAIEAFTNIRDFLLLRMATNLQSLTGKREHRERNQPVPASNINTLA 444
Query: 201 KKKKKKKKKKKIMRK 215
K +KK K + K
Sbjct: 445 ITMLKPRKKAKALPK 459
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_X 2go5_4 2j37_4
Length = 152
Score = 29.1 bits (65), Expect = 0.73
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K KK K ++ K K K K+K KKI
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKKI 36
Score = 27.9 bits (62), Expect = 1.7
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K KK + K ++ K K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 27.5 bits (61), Expect = 2.5
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
K KK K + K K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 27.1 bits (60), Expect = 2.9
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K KK K ++ K K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 27.1 bits (60), Expect = 3.4
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K KK K ++ K K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 26.8 bits (59), Expect = 4.2
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
K +K K ++ K K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 26.8 bits (59), Expect = 4.6
Identities = 9/32 (28%), Positives = 13/32 (40%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K KK ++ + K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 26.4 bits (58), Expect = 4.9
Identities = 8/32 (25%), Positives = 13/32 (40%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
K ++ K ++ K K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 26.4 bits (58), Expect = 5.5
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
K KK K + K + K K+K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
Score = 25.6 bits (56), Expect = 9.7
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
K KK + K ++ K K K ++K KK
Sbjct: 4 KAAVKKADGKTQQALKVAKAVKSGSIKRKSKK 35
>2wd6_A Agglutinin receptor; cell adhesion, secreted, V-region, cell WALL,
AG I/II protei surface adhesin, peptidoglycan-anchor;
2.30A {Streptococcus gordonii}
Length = 349
Score = 29.4 bits (65), Expect = 0.80
Identities = 12/53 (22%), Positives = 20/53 (37%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ K K E K KK+ E + KKK+ + + + + E N
Sbjct: 1 EAKLAKYEADLAKYKKEFAAYTAALAEAESKKKQDGYLSEPRSQSLNFKSEPN 53
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 108
Score = 28.0 bits (62), Expect = 0.87
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
KK K K + K+KKKK K K+K+K+
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKV 37
Score = 27.7 bits (61), Expect = 1.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
KK K K K+KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 27.3 bits (60), Expect = 1.8
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
KK K K K K+KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 27.3 bits (60), Expect = 1.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
KK K + K K K+KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 27.3 bits (60), Expect = 1.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
KK K +K K K+KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 27.3 bits (60), Expect = 2.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
KK K K K ++KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.1 bits (57), Expect = 4.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
K++K K K K+K+KK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.1 bits (57), Expect = 4.7
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
KK K K K +KKKK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.1 bits (57), Expect = 4.7
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
KK++ K K K+KK+K K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 26.1 bits (57), Expect = 4.9
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
KK+K K K K+K KK K K+K+K
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEK 36
Score = 25.7 bits (56), Expect = 5.9
Identities = 13/36 (36%), Positives = 14/36 (38%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KK K K K+KKKK K K K N
Sbjct: 4 KKDKAPPPSSKPAKSGGGKQKKKKWSKGKQKEKVNN 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker,
histone H3; bromodomain, remodeler, acetylation,
transcription; HET: ALY; 2.20A {Saccharomyces
cerevisiae} PDB: 2r0v_A*
Length = 361
Score = 29.4 bits (65), Expect = 0.88
Identities = 10/58 (17%), Positives = 20/58 (34%)
Query: 154 DPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
DP + + K +K KK+K + ++ + K K ++K
Sbjct: 3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQEKTPHVDYN 60
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_P
Length = 149
Score = 28.8 bits (64), Expect = 0.90
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
R+ + +K + K+ K+K K+ K K +KK + KK
Sbjct: 89 LRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQSKK 139
Score = 27.6 bits (61), Expect = 2.3
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R ++ K EK ++ K+ K K K+ K K +KK +K +
Sbjct: 88 RLRKVKILGEKPNTRRSFKELKRKIKRTSGKAITKLLSEKKGDTWASVQSKKSD 141
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A
{Homo sapiens}
Length = 522
Score = 29.3 bits (66), Expect = 0.92
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
K ++E KK+KK+ + KK + + + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
Score = 27.8 bits (62), Expect = 2.8
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
E++ KK+KK+ + +KKK + + + + +
Sbjct: 476 IEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
Score = 27.4 bits (61), Expect = 4.0
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 185 KNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K ++E KK+KK+ + KKK + + E
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENR 505
Score = 27.4 bits (61), Expect = 4.1
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 182 KKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K +++ +K+KK+ + KKK + + + +N
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQN 508
Score = 27.4 bits (61), Expect = 4.8
Identities = 8/34 (23%), Positives = 18/34 (52%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K +++ +KK+KK+ + KKK + + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENR 505
Score = 26.6 bits (59), Expect = 6.5
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
K E++ KK+KK+ + KKK + + + + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
Score = 26.6 bits (59), Expect = 8.6
Identities = 8/39 (20%), Positives = 18/39 (46%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
K +++ K+KK+ + KKK + + + + M
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
Score = 26.2 bits (58), Expect = 8.8
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+E K +++ KK+K++ + KKK + + ++
Sbjct: 465 QELIPFVKPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRL 506
Score = 26.2 bits (58), Expect = 9.3
Identities = 8/38 (21%), Positives = 18/38 (47%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K +++ K +KK+ E KKK + + + + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNM 509
Score = 26.2 bits (58), Expect = 9.4
Identities = 7/35 (20%), Positives = 18/35 (51%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
+++ K++KK+ + KKK + E + + +
Sbjct: 476 IEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
Score = 26.2 bits (58), Expect = 9.5
Identities = 8/39 (20%), Positives = 19/39 (48%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
K ++E KK+KK+ + K K ++ + + + +
Sbjct: 472 KPAPIEQEPSKKQKKQHEGSKKKAAARDVTLENRLQNME 510
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Length = 135
Score = 28.4 bits (63), Expect = 0.92
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
+R R +K E+ ++++K+KK ++KK K+ KK ++
Sbjct: 89 YRLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
Score = 28.0 bits (62), Expect = 1.3
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
R + ++ +K ++++K+KKN+ KK K+ KK ++
Sbjct: 90 RLVRYGLAEKVEKASRQQRKQKKNRDKKIFGTGKRLAKKVARRN 133
>2w4s_A Ankyrin-repeat protein; RNA transport, structural protein; 2.45A
{Cryptosporidium parvum}
Length = 113
Score = 28.1 bits (62), Expect = 0.93
Identities = 5/39 (12%), Positives = 19/39 (48%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K+ + + ++ ++++KE+ K K+ ++ +
Sbjct: 74 KQLVAEDQITIQEWNYIRQEEKERINAKNILKRNNRRCQ 112
>3izc_K 60S ribosomal protein RPL16 (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_K
3o58_P 3o5h_P 3u5e_O 3u5i_O
Length = 199
Score = 28.8 bits (64), Expect = 1.0
Identities = 8/47 (17%), Positives = 17/47 (36%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K + + + K+K + KK+ KK + K++
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQL 194
Score = 28.0 bits (62), Expect = 2.0
Identities = 8/40 (20%), Positives = 13/40 (32%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
K E K+K + KK+ K + K+
Sbjct: 154 AKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 27.6 bits (61), Expect = 2.7
Identities = 8/41 (19%), Positives = 14/41 (34%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
K + K+K + KK+ KK + K +
Sbjct: 154 AKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQL 194
Score = 27.6 bits (61), Expect = 2.9
Identities = 9/46 (19%), Positives = 16/46 (34%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K E + + K+K + KK+ KK + K+
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 27.2 bits (60), Expect = 3.3
Identities = 7/46 (15%), Positives = 16/46 (34%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ ++ K E K+K + K+ +K + K+
Sbjct: 148 KYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
Score = 26.1 bits (57), Expect = 7.3
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
V +RK + KK+ KK N + K+
Sbjct: 152 VVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAAESDVAKQ 193
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 29.2 bits (66), Expect = 1.1
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K EK K K+ +++ +K+++E +KK + + K+K +
Sbjct: 9 GKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKDV 52
Score = 28.0 bits (63), Expect = 2.5
Identities = 9/43 (20%), Positives = 23/43 (53%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K +E+ K K+ +++ K++++ +KK + + K+K
Sbjct: 9 GKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKD 51
Score = 27.6 bits (62), Expect = 3.1
Identities = 9/42 (21%), Positives = 23/42 (54%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
+ +EK K K+ +++ +K+++ +KK + + K+K
Sbjct: 10 KLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKD 51
Score = 26.8 bits (60), Expect = 5.3
Identities = 7/43 (16%), Positives = 23/43 (53%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K ++K + K+ +++ +K+ ++ +K+ + + K+K
Sbjct: 9 GKLREKLKSFVKRVEEEVEKEEEEVEKKGLLDRILTVEIKEKD 51
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD,
protein binding; HET: MSE; 1.85A {Mus musculus}
Length = 253
Score = 29.0 bits (64), Expect = 1.1
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+++ R++ KKK + K +KK KK + + + + + K
Sbjct: 133 YKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLL 182
Score = 28.6 bits (63), Expect = 1.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
KK + ++ K+ KK +++ KKK + K +KK KK + +
Sbjct: 119 KKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDI 165
Score = 28.3 bits (62), Expect = 1.7
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K + K K+ KK + + KKK K +KK KK + + ++ + +
Sbjct: 120 KVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLD 170
Score = 28.3 bits (62), Expect = 1.8
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+ + +K K+ KK ++ KKK K +KK KK + + I + ++
Sbjct: 119 KKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDS 171
Score = 27.9 bits (61), Expect = 2.2
Identities = 11/58 (18%), Positives = 23/58 (39%)
Query: 153 SDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
D ++ ++E KKK K +KK KK + + + + + + + K
Sbjct: 125 LDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQLDSALQDVNDKYLL 182
Score = 27.9 bits (61), Expect = 2.6
Identities = 12/50 (24%), Positives = 25/50 (50%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ + +K +E KK +++ KKK + K +KK KK + + + +
Sbjct: 119 KKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQPQ 168
Score = 26.3 bits (57), Expect = 8.9
Identities = 13/62 (20%), Positives = 28/62 (45%)
Query: 149 FIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
I+P ++ + K ++ KK +++ KKK+ K +KK KK + + +
Sbjct: 107 LINPLQEQMEEWKKVANQLDKDHAKEYKKARQEIKKKSSDTLKLQKKAKKVDAQGRGDIQ 166
Query: 209 KK 210
+
Sbjct: 167 PQ 168
>3pn3_A Peptide deformylase 1B, chloroplastic; PDF, N-terminal excision
pathway, N induced-FIT, hydrolase-hydrolase inhibitor
complex; HET: PN3; 1.30A {Arabidopsis thaliana} PDB:
3m6p_A* 3o3j_A* 3pn2_A 3m6o_A* 3pn4_A* 3pn5_A 3m6q_A
3pn6_A 3m6r_A 3cpm_A
Length = 193
Score = 28.7 bits (65), Expect = 1.2
Identities = 5/35 (14%), Positives = 18/35 (51%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
+ +++ + +KK +K ++ + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 27.9 bits (63), Expect = 2.3
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+++ + +KK +EK ++ + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 27.5 bits (62), Expect = 2.5
Identities = 3/34 (8%), Positives = 17/34 (50%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+++ + +K+ ++K ++ + ++K+
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKR 184
Score = 27.1 bits (61), Expect = 3.5
Identities = 5/35 (14%), Positives = 17/35 (48%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+++ +KK ++K ++ + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 26.7 bits (60), Expect = 4.2
Identities = 7/30 (23%), Positives = 18/30 (60%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
+++ E +KK ++K ++ E ++K+K
Sbjct: 156 REELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 26.7 bits (60), Expect = 5.2
Identities = 6/35 (17%), Positives = 18/35 (51%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+++ + +KK E+K ++ + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 26.4 bits (59), Expect = 6.2
Identities = 5/35 (14%), Positives = 17/35 (48%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+++ + +KK + K ++ + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 26.4 bits (59), Expect = 7.3
Identities = 4/35 (11%), Positives = 17/35 (48%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+++ + KK +++ ++ + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
Score = 25.6 bits (57), Expect = 10.0
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK 195
+E+ + EKK ++K + + ++K+K
Sbjct: 151 VLDSIREELEALEKKYEEKTGLPSPERVEARQKRK 185
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 203
Score = 28.4 bits (63), Expect = 1.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
E+K+KE+ K +KKK+ +K+ EK +KK K + K
Sbjct: 154 ATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKT 198
Score = 27.3 bits (60), Expect = 3.4
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+H K + ++K+K+K K KKK+ + +K+ +K +KK K ++++
Sbjct: 142 AHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKYTEVLKT 198
Score = 26.1 bits (57), Expect = 7.6
Identities = 13/61 (21%), Positives = 26/61 (42%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ K + ++K+K+K K +KKK+ + +K+ +K +KK K
Sbjct: 133 RKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVEKKIDKY 192
Query: 211 K 211
Sbjct: 193 T 193
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces
cerevisiae}
Length = 1030
Score = 29.1 bits (65), Expect = 1.4
Identities = 5/46 (10%), Positives = 16/46 (34%)
Query: 152 PSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKK 197
D K+ + K++ + ++++K + K+
Sbjct: 977 DHDVKQQYVPISYSKDPSIWDLKQELEDAEEERKLMMAEARAKRTH 1022
>3h0g_A DNA-directed RNA polymerase II subunit RPB1; transcription,
multi-protein complex, DNA- binding, magnesium; 3.65A
{Schizosaccharomyces pombe}
Length = 1752
Score = 28.9 bits (64), Expect = 1.4
Identities = 6/56 (10%), Positives = 10/56 (17%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
R K K K + + +RK+
Sbjct: 130 YRDPKNRLNAVWNVCKTKMVCDTGLSAGSDNFDLSNPSANMGHGGCGAAQPTIRKD 185
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 28.9 bits (65), Expect = 1.5
Identities = 6/45 (13%), Positives = 13/45 (28%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
RK ++ K + K + E+ +K +
Sbjct: 965 TERKDTFFAQQWTGVKSSAETYKNTLLAELERLQKIEDLHHHHHH 1009
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics,
PSI-2, protein structure initiative; HET: PG4; 1.80A
{Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A*
3kt8_A*
Length = 432
Score = 28.5 bits (63), Expect = 1.7
Identities = 9/42 (21%), Positives = 19/42 (45%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+ RR + ++ +K K + ++ K K K++KK
Sbjct: 391 FQERRAQVDEETLDKFMVPHKLVWGEKERLVAPKPKTKQEKK 432
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 28.3 bits (62), Expect = 1.8
Identities = 5/56 (8%), Positives = 23/56 (41%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++R E + + + + ++ + + + + + + K++++ R E
Sbjct: 125 QKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSRE 180
Score = 26.3 bits (57), Expect = 9.0
Identities = 2/53 (3%), Positives = 26/53 (49%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ + + ++ + + + + + + K+++++++ +++ + +E
Sbjct: 136 RRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQE 188
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 28.3 bits (64), Expect = 1.9
Identities = 10/54 (18%), Positives = 28/54 (51%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
+K ++ +KE+ + ++ +K + E++ +++ + KK K+K+ E
Sbjct: 400 EQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKSWKEKQGQENSE 453
>1rl4_A Formylmethionine deformylase; crystal engineering, drug design,
malaria, PDF, peptide DEFO plasmodium, hydrolase; HET:
BRR BL5; 2.18A {Plasmodium falciparum} SCOP: d.167.1.1
PDB: 1rqc_A 1jym_A
Length = 188
Score = 27.9 bits (63), Expect = 2.0
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKK 204
KKK + K + ++ K +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
Score = 27.5 bits (62), Expect = 2.3
Identities = 4/27 (14%), Positives = 8/27 (29%)
Query: 184 KKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K K + K + + K +
Sbjct: 160 DKKKVRPKLNELIRDYKATHSLEHHHH 186
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation,
ribosome, ribosomal, ribosomal R ribosomal protein,
eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Length = 108
Score = 27.3 bits (60), Expect = 2.0
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
K++ K K K+ KKK KK K +
Sbjct: 4 KQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 27.3 bits (60), Expect = 2.1
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K++ K K KK KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.9 bits (59), Expect = 2.2
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K++ K K KK KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDRA 36
Score = 26.9 bits (59), Expect = 2.4
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K++ K K KK KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.5 bits (58), Expect = 3.5
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K++ K K KK KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.1 bits (57), Expect = 4.6
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K++ K KK KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 26.1 bits (57), Expect = 4.7
Identities = 10/33 (30%), Positives = 14/33 (42%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
K++ K K +K KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
Score = 25.4 bits (55), Expect = 7.7
Identities = 10/33 (30%), Positives = 13/33 (39%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
K++ K K K KKK KK K +
Sbjct: 3 PKQQLSKAAKAAAALAGGKKSKKKWSKKSMKDR 35
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein
complex; 1.50A {Escherichia coli} SCOP: b.68.4.1
c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Length = 415
Score = 28.2 bits (63), Expect = 2.0
Identities = 14/74 (18%), Positives = 20/74 (27%), Gaps = 7/74 (9%)
Query: 2 VDFKS-KARNNQYVTCGSVVKLMNVDYRVRLHSHDVKYGTGS--GQQSVTGTEVKEDVNS 58
V + A V G V + Y V D G+ Q S +
Sbjct: 65 VQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAG 124
Query: 59 H----WIIKAPTGK 68
H + + TG
Sbjct: 125 HTASDEVFEKLTGI 138
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 28.0 bits (63), Expect = 2.0
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKK 189
R +K + KE+ KKK+K K+ +++
Sbjct: 176 RARKMEDSKEKNGKKKRKSLAKRIRER 202
Score = 26.8 bits (60), Expect = 5.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNK 187
R R+ ++ K+K KKK+K K+ + +
Sbjct: 176 RARKMEDSKEKNGKKKRKSLAKRIRER 202
Score = 26.4 bits (59), Expect = 6.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKK 190
R ++ + +EK KKK+K K +++
Sbjct: 176 RARKMEDSKEKNGKKKRKSLAKRIRER 202
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila}
PDB: 2xzn_8
Length = 143
Score = 27.4 bits (60), Expect = 2.0
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K+ +KK K K + KK KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 27.4 bits (60), Expect = 2.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K+ +KK K+ K + KK KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 27.1 bits (59), Expect = 3.1
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K+ +KK + K + KK KKK K K K K+
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKV 39
Score = 27.1 bits (59), Expect = 3.5
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
K+ +KK K+ K + KK KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 26.3 bits (57), Expect = 5.6
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
++ +KK K+ K + KK KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 26.3 bits (57), Expect = 6.2
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
K+ +KK K+ + K+ KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 26.3 bits (57), Expect = 6.3
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
++ +KK K+ K + +K KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 26.3 bits (57), Expect = 6.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
K+ +KK K+ K + KK KKK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 25.9 bits (56), Expect = 7.3
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
K+ KK K+ K + KK KKK K K K +
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDKVNH 41
Score = 25.5 bits (55), Expect = 9.1
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
K+ ++K K+ K + K KK+ K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
Score = 25.5 bits (55), Expect = 10.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
K+ +KK K+ K KK +KK K K K K
Sbjct: 3 KQPAAGQKKTKEAIAKAAQAKKGGKKKWTKGKAKDK 38
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_I 4a1c_I 4a1e_I
Length = 198
Score = 28.0 bits (62), Expect = 2.0
Identities = 11/41 (26%), Positives = 22/41 (53%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
E+ ++K++ + K + KK K+ +KK+ K K K+
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKL 193
Score = 26.8 bits (59), Expect = 4.9
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
K E+K++ K KK K+ + +KK+ K K K +
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
Score = 26.0 bits (57), Expect = 7.9
Identities = 10/43 (23%), Positives = 21/43 (48%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
EK ++K++ + K KK ++ +KK+ K K + +
Sbjct: 153 EKLEEKRRARAKTYHDKKVKQADARKKELAAPALKAIKDKLAQ 195
>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC,
cell junction, cell membrane, membrane, SH3 domain;
2.80A {Homo sapiens}
Length = 308
Score = 28.2 bits (62), Expect = 2.1
Identities = 3/53 (5%), Positives = 19/53 (35%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ R + + ++ + + + + + ++ KK ++ ++
Sbjct: 68 NQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSRE 120
Score = 27.1 bits (59), Expect = 4.7
Identities = 5/55 (9%), Positives = 19/55 (34%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
N R + + + N + + + + ++ KK ++ ++ +
Sbjct: 68 NQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSREDL 122
Score = 26.3 bits (57), Expect = 8.3
Identities = 5/54 (9%), Positives = 17/54 (31%)
Query: 139 PVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKE 192
P + + + + + E + + ++ KK ++ +E
Sbjct: 67 PNQSRAEQLASLEAAQRAVGVGPGSSAGSNARAEFWRLRGLRRGAKKTTQRSRE 120
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase,
pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces
cerevisiae} PDB: 3uai_A
Length = 400
Score = 28.2 bits (63), Expect = 2.2
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+KKK+ K K K + N+ ++ KK+ ++
Sbjct: 351 GLGPVAQKKKQMKADGKLDKYGRVNENTPEQWKKEYVPLDNAEQHH 396
>3bbn_K Ribosomal protein S11; small ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 140
Score = 27.3 bits (61), Expect = 2.4
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 188 KKKKEKKKKKKKKKKKKKKKKKKKI 212
K + ++ + +K +KI
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKI 27
Score = 27.3 bits (61), Expect = 2.6
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKK 202
K K ++N + K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.9 bits (60), Expect = 3.1
Identities = 4/24 (16%), Positives = 9/24 (37%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKK 210
K K ++ + +K +K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARK 26
Score = 26.9 bits (60), Expect = 3.5
Identities = 5/29 (17%), Positives = 10/29 (34%)
Query: 184 KKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K K + + +K +K K +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPKGV 31
Score = 26.9 bits (60), Expect = 3.7
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKK 206
K K ++ +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.5 bits (59), Expect = 4.6
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKK 205
K K +++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 26.5 bits (59), Expect = 5.2
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 181 KKKKKNKKKKKEKKKKKKKKKKKKKKK 207
K K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 7.2
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 177 KKKKKKKKKNKKKKKEKKKKKKKKKKK 203
K K + + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 8.3
Identities = 4/27 (14%), Positives = 11/27 (40%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKE 192
K K ++ + +K + +K +
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 8.4
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKK 204
K K + + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.7 bits (57), Expect = 9.1
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K K + + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
Score = 25.4 bits (56), Expect = 9.7
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 182 KKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K ++ + +K +K K
Sbjct: 3 KPIPKIGSRRNGRISSRKSASARKIPK 29
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_K
Length = 206
Score = 27.6 bits (61), Expect = 2.5
Identities = 11/48 (22%), Positives = 23/48 (47%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
++ EEK+K+K K + K+ K + K +K ++K + +
Sbjct: 153 NYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEI 200
Score = 27.2 bits (60), Expect = 4.0
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
R+ E+K+KE+ K ++K+ + K EK ++K + +
Sbjct: 159 RELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEILAP 203
Score = 26.5 bits (58), Expect = 6.6
Identities = 10/46 (21%), Positives = 22/46 (47%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E ++K+K+K K ++K+ K + K +K ++K +
Sbjct: 153 NYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQL 198
Score = 26.1 bits (57), Expect = 7.8
Identities = 9/49 (18%), Positives = 25/49 (51%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ ++ E+K+K+K K +K+ + + K +K ++K + + +
Sbjct: 153 NYADTIRELEEKRKEKAKVSYDRRKQLAKLRVKAEKAAEEKLGTQLEIL 201
>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone,
peptidyl-prolyl isomerase, heat shock protein, FK
family; HET: MSE; 1.97A {Escherichia coli} SCOP:
d.26.1.1 PDB: 1q6i_A* 1q6u_A
Length = 224
Score = 27.8 bits (62), Expect = 2.5
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+ + + + + K +K N+ K KE ++K K+K
Sbjct: 78 QAFEARVKSSAQAKMEKDAADNEAKGKEYREKFAKEK 114
Score = 26.3 bits (58), Expect = 7.1
Identities = 6/30 (20%), Positives = 15/30 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKK 190
+ + + +K + K K+ ++K K+K
Sbjct: 85 KSSAQAKMEKDAADNEAKGKEYREKFAKEK 114
>2ew5_A Peptide deformylase; inhibitor, hydrolase; HET: Y12; 2.20A
{Helicobacter pylori} PDB: 2ew6_A* 2ew7_A
Length = 181
Score = 27.5 bits (62), Expect = 2.5
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKK 204
K+KK +K+ K+ +K++K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 27.1 bits (61), Expect = 3.9
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 184 KKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K+ K +K+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
Score = 25.9 bits (58), Expect = 7.5
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 193 KKKKKKKKKKKKKKKKKKKIMRKEE 217
K+KK +K+ K+ +KK+K K+
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHH 179
Score = 25.9 bits (58), Expect = 9.2
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKKK 211
K+KK EK+ K+ +KK+K K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHH 179
Score = 25.6 bits (57), Expect = 10.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKK 194
K+KK EK+ K+ +KK+K +
Sbjct: 155 KRKKFEKELKELQKKQKHKLEHHHHHH 181
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase-tRNA complex;
HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A
{Saccharomyces cerevisiae}
Length = 394
Score = 27.8 bits (62), Expect = 2.7
Identities = 15/54 (27%), Positives = 23/54 (42%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
R++ KE ++ +K +K KK KK K K K K + + EE
Sbjct: 338 RQEFANNKEFQEASEKGYPVATPQKSKKAKKPKNKGTKYPGATKTNEIATKLEE 391
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 184
Score = 27.6 bits (61), Expect = 2.8
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKK 195
+++ K EE+ +KKK +KK KK+K ++
Sbjct: 153 KEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 27.2 bits (60), Expect = 3.4
Identities = 10/34 (29%), Positives = 22/34 (64%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKK 199
EK++ K +++ +KKK ++KK K++K ++
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 27.2 bits (60), Expect = 3.6
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 185 KNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
K + K +++ +KKK +KK KK+K+M +E
Sbjct: 153 KEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 27.2 bits (60), Expect = 3.7
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
EK++ K +++ +KKK +KK KK+K ++
Sbjct: 151 TEKEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
Score = 26.0 bits (57), Expect = 8.4
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 184 KKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
K+ K E++ +KKK +KK KK+K + R+
Sbjct: 153 KEQIVPKPEEEVAQKKKISQKKLKKQKLMARE 184
>1tjl_A DNAK suppressor protein; DKSA, transcription factor, RNA
polymerase, stringent response, PPGPP, riken structural
genomics/proteomics initiative; 2.00A {Escherichia coli}
SCOP: a.2.14.1 g.39.1.13 PDB: 3h3p_S
Length = 151
Score = 27.2 bits (60), Expect = 2.9
Identities = 3/35 (8%), Positives = 13/35 (37%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ +K + ++K ++ M + +
Sbjct: 2 QEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQ 36
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase;
protein-aminoacyladenylate complex class-II tRNA
synthetase,; HET: 5CA; 2.55A {Methanothermobacter
thermautotrophicusorganism_taxid} SCOP: c.51.1.1
d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*
Length = 501
Score = 27.8 bits (62), Expect = 3.0
Identities = 4/35 (11%), Positives = 8/35 (22%)
Query: 184 KKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ + +K KK + K
Sbjct: 5 HHHHHHSSGLVPRGSHMQKPIKKDPNRYHGEKMTE 39
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome,
ribosomal R ribosomal protein, STM1, eukaryotic
ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I
2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V
3jyw_N
Length = 184
Score = 27.2 bits (60), Expect = 3.0
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 183 KKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
K++ K EKK + +++ + +K+I
Sbjct: 153 KEEAVAKAAEKKVVRLTSRQRGRIAAQKRI 182
Score = 26.5 bits (58), Expect = 6.2
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
EK++ K +KK + ++ + +K+
Sbjct: 151 TEKEEAVAKAAEKKVVRLTSRQRGRIAAQKR 181
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA
complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Length = 123
Score = 27.0 bits (59), Expect = 3.1
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 182 KKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K K KK K +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 26.6 bits (58), Expect = 4.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
K K KK K +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 26.6 bits (58), Expect = 4.3
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
K K KK K +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 26.6 bits (58), Expect = 4.3
Identities = 14/30 (46%), Positives = 15/30 (50%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
K K KK K +K K KKKK RKE
Sbjct: 4 KTSGKAAKKAGKAQKNITKTDKKKKRKRKE 33
Score = 25.8 bits (56), Expect = 7.2
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
K K KK K +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 25.8 bits (56), Expect = 7.6
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+ K KK K K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
Score = 25.4 bits (55), Expect = 8.7
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
K K KK + +K K KKKK+K+K
Sbjct: 3 PKTSGKAAKKAGKAQKNITKTDKKKKRKRK 32
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 27.9 bits (62), Expect = 3.4
Identities = 10/61 (16%), Positives = 22/61 (36%)
Query: 156 VANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
V + + K+ E +K K++ ++ ++ K + K K K+ R
Sbjct: 2016 VEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRS 2075
Query: 216 E 216
Sbjct: 2076 I 2076
>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain,
long alpha helix, dimerisation VIA helical INTE
isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1
PDB: 2uz5_A 2vcd_A*
Length = 213
Score = 27.3 bits (61), Expect = 3.5
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
K K+ + KK +NK K + + K K
Sbjct: 67 KDLMAKRTAEFNKKADENKVKGEAFLTENKNKP 99
>2wau_A VAR2CSA, erythrocyte membrane protein 1 (pfemp1); chondroitin
sulphate A, membrane protein DBL, malaria; 3.00A
{Plasmodium falciparum}
Length = 302
Score = 27.5 bits (61), Expect = 3.5
Identities = 10/52 (19%), Positives = 19/52 (36%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KKKE + + K K +K++ + K K + + + E
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETR 282
Score = 26.7 bits (59), Expect = 5.5
Identities = 7/47 (14%), Positives = 13/47 (27%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
++ + E K +KK+ + K KK
Sbjct: 189 TKRNELYENMVTACNSAKCNTSNGSVDKKECTEACKNYSNFILIKKK 235
Score = 26.7 bits (59), Expect = 6.1
Identities = 10/50 (20%), Positives = 18/50 (36%)
Query: 163 RRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
KK++ + + K+ K KK+ E K K + + K
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDE 280
Score = 26.3 bits (58), Expect = 7.5
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+KKE + + K+ K + K+ + K K + + K + K
Sbjct: 231 LIKKKEYQSLNSQYDMNYKETKAEKKESPEYFKDKCNGECSCLSEYFKDETRWKNPY 287
>3rrc_A Duffy receptor; duffy binding like, receptor recognition, duffy
antigen RECE chemokines, cell invasion; HET: EDO; 1.95A
{Plasmodium vivax} PDB: 2c6j_A
Length = 317
Score = 27.5 bits (61), Expect = 3.6
Identities = 8/52 (15%), Positives = 16/52 (30%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+KK + K K +K + K++ + + E N
Sbjct: 236 TRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEIN 287
Score = 26.8 bits (59), Expect = 5.5
Identities = 7/51 (13%), Positives = 17/51 (33%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
R+K + K K +K + K++ + + + +I
Sbjct: 236 TRKKNQWDVLSNKFISVKNAEKVQTAGIVTPYDILKQELDEFNEVAFENEI 286
Score = 26.4 bits (58), Expect = 7.6
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
E + +K K+K K KK + + K + +KK
Sbjct: 194 SELPTEVQKLKEKCDGKINYTDKKVCKVPPCQNACKSYDQWITRKK 239
>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor
60S, translation, large ribosomal subunit; 3.52A
{Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A
Length = 264
Score = 27.2 bits (61), Expect = 3.6
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+K + ++ + +K+K K
Sbjct: 231 SAGQKVGLRAARRTGLVRGGQKEKMAMKAAA 261
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 27.3 bits (61), Expect = 3.7
Identities = 6/21 (28%), Positives = 15/21 (71%)
Query: 163 RRKKEKKKKEEKKKKKKKKKK 183
R +++ K+K E++ +K+K+
Sbjct: 171 RLRRDSKEKNERRLAYQKRKE 191
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 27.7 bits (61), Expect = 3.9
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KK K + + K + + K K+K I++
Sbjct: 635 KKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNM 677
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding
protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB:
1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D
3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D
3azj_D 3azk_D 3azl_D 3azm_D ...
Length = 126
Score = 26.7 bits (58), Expect = 3.9
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
+ K KK +KK + +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 26.3 bits (57), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ K KK KK K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 26.3 bits (57), Expect = 5.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 172 EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
E K KK K K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 26.3 bits (57), Expect = 5.3
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 173 EKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKK 205
E K KK K K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 26.3 bits (57), Expect = 5.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 179 KKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K KK +K K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 25.9 bits (56), Expect = 6.0
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+ K KK KK K ++K KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 25.9 bits (56), Expect = 7.1
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 178 KKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
+ K KK K+ K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 25.9 bits (56), Expect = 7.3
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 170 KKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKK 202
+ + KK KK K +K+ KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 25.9 bits (56), Expect = 7.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 169 KKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+ + KK KK K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
Score = 25.5 bits (55), Expect = 8.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ K K KK K +KK KK+KK +K
Sbjct: 3 EPAKSAPAPKKGSKKAVTKTQKKGDKKRKKSRK 35
>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha,
nuclear localisation SIGN recognition, chloride
intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus}
PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I
1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A
1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ...
Length = 510
Score = 27.3 bits (60), Expect = 4.0
Identities = 3/32 (9%), Positives = 6/32 (18%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKK 191
H K+ K + +
Sbjct: 2 HHHHHHSSGLVPRGSGMKETAAAKFERQHMDS 33
>3bqk_A Pfemp1 protein, erythrocyte membrane protein 1; malaria, pregnancy,
VAR2CSA encoded pfemp1 protein, DBL3X DO chondroitin
sulphate A; 1.80A {Plasmodium falciparum} PDB: 3bqi_A
3bql_A 3cml_A 3cpz_A
Length = 360
Score = 27.3 bits (60), Expect = 4.1
Identities = 9/45 (20%), Positives = 15/45 (33%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+KK+E K+K K + K K K+ +
Sbjct: 296 SEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFND 340
Score = 27.3 bits (60), Expect = 4.5
Identities = 9/51 (17%), Positives = 18/51 (35%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+KK+E K+K K + K K + K+ + + +
Sbjct: 296 SEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIEYKT 346
Score = 26.5 bits (58), Expect = 8.5
Identities = 8/50 (16%), Positives = 17/50 (34%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+K+E K++ K + K K + K+ + + K
Sbjct: 296 SEKKQEWDKQKTKYENKYVGKSASDLLKENYPECISANFDFIFNDNIEYK 345
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold,
coiled coil, riken structural genomics/proteomics
initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus}
SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A*
1iyw_A
Length = 862
Score = 27.5 bits (62), Expect = 4.1
Identities = 6/55 (10%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKK--------KKKEKKKKKKKKKKKKKKKKKKKI 212
+ ++++E++ K+ ++ +K K ++ + ++ + K+ ++ ++I
Sbjct: 800 EWRRRQEKRLKELLALAERSQRKLASPGFREKAPKEVVEAEEARLKENLEQAERI 854
>3iz6_U 40S ribosomal protein S24 (S24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum}
Length = 138
Score = 26.5 bits (58), Expect = 4.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
+R R K E+ +K+ K++K + K + +K K KKK
Sbjct: 95 YRLIRNGLATKVEKSRKQMKERKNRAKKIRGVKKTKAGDAGKKK 138
>3qqc_A DNA-directed RNA polymerase subunit B, DNA-direct polymerase
subunit A', DNA-directed...; transcription, fusion
protein, chimera protein, multiprotein; 3.30A
{Pyrococcus furiosus}
Length = 436
Score = 27.4 bits (61), Expect = 4.3
Identities = 7/58 (12%), Positives = 19/58 (32%)
Query: 160 HRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
++ K+ K++ K EK + +K ++ + + + E
Sbjct: 189 SEFNEIIKEIHKKAKERMVCPHCGAPQYPIKFEKPTIYWEIRKDEQGNEYRHRLMPTE 246
>3v2d_T 50S ribosomal protein L19; ribosome associated inhibitor A, RAIA,
protein Y, stress RES stationary phase, ribosome
hibernation, ribosome; 2.70A {Thermus thermophilus} PDB:
2hgq_S 2hgj_S 2hgu_S 2j03_T 2jl6_T 2jl8_T 2v47_T 2v49_T
2wdi_T 2wdj_T 2wdl_T 2wdn_T 2wh2_T 2wh4_T 2wrj_T 2wrl_T
2wro_T 2wrr_T 2x9s_T 2x9u_T ...
Length = 146
Score = 26.6 bits (59), Expect = 4.3
Identities = 8/44 (18%), Positives = 22/44 (50%)
Query: 161 RRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
R +E ++K +K+ + + + K+E +K ++ K ++
Sbjct: 103 RNLSDREIRRKLRADRKRIDQDRAAERAAKEEAQKAQEPKASQE 146
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 27.4 bits (60), Expect = 4.3
Identities = 9/58 (15%), Positives = 26/58 (44%)
Query: 159 SHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKE 216
S R +++ +K ++ ++ +++ K + EK K + + + + K+K
Sbjct: 104 SLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEAS 161
Score = 26.7 bits (58), Expect = 6.9
Identities = 7/75 (9%), Positives = 30/75 (40%)
Query: 141 LWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
+ + + + ++ RK ++ ++ +++ K + +K K + + +
Sbjct: 91 HAEDLNSGPLSKLSLLIRERQQLRKTYSEQWQQLQQELTKTHSQDIEKLKSQYRALARDS 150
Query: 201 KKKKKKKKKKKIMRK 215
+ K+K ++ +
Sbjct: 151 AQAKRKYQEASKDKD 165
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling
protein; 2.85A {Arabidopsis thaliana}
Length = 338
Score = 27.3 bits (60), Expect = 4.4
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+++ + +++ +K+K+ K K K + K K
Sbjct: 301 RRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSK 337
Score = 26.5 bits (58), Expect = 7.8
Identities = 9/37 (24%), Positives = 17/37 (45%)
Query: 171 KEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
+ E + +++K K+K+ K K K + K K
Sbjct: 301 RRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAKSK 337
>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR
SRT; 1.60A {Pseudomonas syringae PV}
Length = 219
Score = 27.0 bits (60), Expect = 4.5
Identities = 3/37 (8%), Positives = 11/37 (29%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
++ + + + K ++ +K K
Sbjct: 74 REHDAAIAQAETAGTDAPTEAALKAERTFMAGEKAKP 110
>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I,
phosphoenolpyruvate:sugar phosphotransferase system,
PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A
2xdf_A 2l5h_A
Length = 575
Score = 27.1 bits (61), Expect = 4.5
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 148 IFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKK 181
++++P++ V + R +++ +K E K K
Sbjct: 227 VYVNPTNEVIDKMRAVQEQVASEKAELAKLKDLP 260
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm,
transport, magnesium, PEP- utilising enzyme,
phosphotransferase system; 2.40A {Staphylococcus aureus}
PDB: 2hro_A
Length = 572
Score = 27.1 bits (61), Expect = 4.7
Identities = 5/34 (14%), Positives = 19/34 (55%)
Query: 148 IFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKK 181
+ ++P++ +++ +R++ K+E +K +
Sbjct: 229 VIVNPTEDELIAYQDKRERYFADKKELQKLRDAD 262
>3bbo_V Ribosomal protein L23; large ribosomal subunit, spinach chloroplast
ribosome, ribonucleoprotein particle, macromolecular
complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Length = 198
Score = 26.9 bits (59), Expect = 4.9
Identities = 4/39 (10%), Positives = 9/39 (23%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
KK +K + K + + +
Sbjct: 46 KKLHTQKSFNFHDAVTPMNKPSFGRDLMVAQATEAVAPT 84
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 26.7 bits (59), Expect = 5.1
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
+ + K + +KK+K K ++KK
Sbjct: 159 RNSYELCVNKLKEARKKDKLTFGGMFDKGPLYEEKKNSA 197
>2xzm_K RPS14E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB:
2xzn_K 3j0o_K 3j0l_K 2zkq_k 3iz6_K 3jyv_K*
Length = 151
Score = 26.3 bits (58), Expect = 5.4
Identities = 3/26 (11%), Positives = 6/26 (23%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKKKI 212
KK +K+ +
Sbjct: 3 PKKTAPVQKEVISYGPPNVGANENVF 28
>2q8k_A Proliferation-associated protein 2G4; EBP1, PA2G4, methionine
aminopeptidase, PITA-bread, transcri; 1.60A {Homo
sapiens} PDB: 2v6c_A
Length = 401
Score = 27.0 bits (60), Expect = 5.4
Identities = 9/47 (19%), Positives = 21/47 (44%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
K E + ++ + K + + +KKK+KK K + + ++
Sbjct: 351 KSEMEVQDAELKALLQSSASRKTQKKKKKKASKTAENATSGETLEEN 397
Score = 27.0 bits (60), Expect = 5.9
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 190 KKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ +K +KKKKKK K + E
Sbjct: 366 QSSASRKTQKKKKKKASKTAENATSGET 393
Score = 26.3 bits (58), Expect = 9.8
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 187 KKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+ K +KKKKKK K + EEN
Sbjct: 366 QSSASRKTQKKKKKKASKTAENATSGETLEEN 397
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 26.7 bits (59), Expect = 5.7
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 176 KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMR 214
KK N KK +++ + + KK + +
Sbjct: 1 KKSPSAGSGSNGGNKKISQEEGEDNGGEDNKKLRGALSS 39
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large
ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila}
PDB: 4a19_E 4a1b_E 4a1d_E
Length = 191
Score = 26.6 bits (58), Expect = 5.7
Identities = 10/39 (25%), Positives = 24/39 (61%)
Query: 174 KKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
++K +K K K + E++KKK+ ++K +K+ ++ +
Sbjct: 118 GREKARKNHKNLFKAELTEEQKKKETERKNARKQDQQAV 156
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 26.2 bits (58), Expect = 5.8
Identities = 4/34 (11%), Positives = 12/34 (35%)
Query: 165 KKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKK 198
+ ++ K +++ +KK + K
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSK 158
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain,
TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma
parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Length = 223
Score = 26.5 bits (59), Expect = 5.9
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 155 PVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNK 187
V H + + ++ K K KK+NK
Sbjct: 189 AVCRHHHKVPNRPYLNSNSEEFIKFFKNKKRNK 221
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 27.0 bits (60), Expect = 6.0
Identities = 3/35 (8%), Positives = 14/35 (40%)
Query: 167 EKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
K++ E+ ++ ++ E + +++
Sbjct: 24 RNKRQLEEAHDAQRVQEVFAWTTTAEYEALNFRRE 58
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA
splicing, adenine, mRNA processing, nucleus,
phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo
sapiens} PDB: 2f9d_A 2f9j_A 2fho_B
Length = 115
Score = 25.8 bits (57), Expect = 6.0
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 157 ANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKK 190
N++R +K + KKKEE+ K K+K K
Sbjct: 82 YNANRAFQKMDTKKKEEQLKLLKEKYGINTDPPK 115
>2w8d_A Processed glycerol phosphate lipoteichoic acid SY; transferase,
phosphatase, cell membrane, transmembrane, LTA,
membrane, secreted, cell WALL; HET: TPO PG4; 2.35A
{Bacillus subtilis}
Length = 436
Score = 26.7 bits (59), Expect = 6.1
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKK 209
+ + K KK N K + + K + K
Sbjct: 402 RFYEPKGFKKVNPSDYDYTKHDEDSSETSKDNEDK 436
>1ois_A DNA topoisomerase I; DNA-binding protein; HET: DNA; 1.90A
{Saccharomyces cerevisiae} SCOP: e.15.1.1
Length = 223
Score = 26.4 bits (58), Expect = 6.2
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 188 KKKKEKKKKKKKKKKKKKKKKKKKIMRK 215
+ +KE+KK+ ++KK+ + +++K
Sbjct: 102 QLQKEQKKQLTSQEKKQIRLEREKFEED 129
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 26.7 bits (59), Expect = 6.2
Identities = 10/53 (18%), Positives = 18/53 (33%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
KK + E + K + K K+ K+K K + K + +
Sbjct: 232 LTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNK 284
Score = 26.3 bits (58), Expect = 8.1
Identities = 11/57 (19%), Positives = 20/57 (35%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEEN 218
+K E + + K + K K +K K+K K + K + +N
Sbjct: 232 LTKKTEYEIQTNKYDNEFKNKNSNDKDAPDYLKEKCNDNKCECLNKHIDDKNKTWKN 288
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding,
nucleotide-binding, phosphorylation, acetylation,
alternative splicing, coiled coil; HET: GDP GTP; 4.00A
{Homo sapiens}
Length = 361
Score = 26.7 bits (58), Expect = 6.4
Identities = 3/57 (5%), Positives = 19/57 (33%)
Query: 145 MEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
++ + N + +KE + + ++ + + + + + + +
Sbjct: 304 LKRGGRKVENEDMNKDQILLEKEAELRRMQEMIARMQAQMQMQMQGGDGDGGALGHH 360
>1tii_A LT-IIB, heat labIle enterotoxin type IIB; ADP-ribosyl transferase,
ADP-ribosylation, ganglioside receptor; 2.25A
{Escherichia coli} SCOP: d.166.1.1
Length = 190
Score = 26.3 bits (57), Expect = 6.4
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 86 HTTTNKNLHSHHFSSPLSGAQEVSAYLSATR 116
T N NL+ H + + Y+S T
Sbjct: 32 GTPININLYDHARGTATGNTRYNDGYVSTTT 62
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP:
d.201.1.1 PDB: 1kvv_A
Length = 104
Score = 25.5 bits (56), Expect = 6.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Query: 151 HPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKK 200
+P R +K K + + +K + + +K++++K KKKKKK
Sbjct: 55 YPKSWWEEGGRVVVEKRGTKTKLMIELARKIAEIREQKREQKKDKKKKKK 104
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 26.9 bits (60), Expect = 6.5
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 18/84 (21%)
Query: 134 WPDHNPVLWKTMEGIFIHPSDPVANSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEK 193
WP + EG F+ K + + K+KK +KK K + K+++
Sbjct: 286 WPHKDQ-----GEGHFV-------------AKLTFHGQNQMHKEKKTRKKSKVQMTKEQE 327
Query: 194 KKKKKKKKKKKKKKKKKKIMRKEE 217
K + + + ++ +
Sbjct: 328 KLWTEFSNDFHYEATGRLLVFNDH 351
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase,
rossmann fold, LEFT-handed-beta-helix, cell shape; HET:
COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB:
3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Length = 501
Score = 26.8 bits (60), Expect = 7.1
Identities = 3/43 (6%), Positives = 15/43 (34%)
Query: 164 RKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
++ + ++K+ + K+ E ++ + +
Sbjct: 457 AGPQRNIENWVQRKRPGSPAAQASKRASEMACQQPTQPPDADQ 499
Score = 26.4 bits (59), Expect = 10.0
Identities = 2/32 (6%), Positives = 13/32 (40%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEK 193
+R++ + K+ + ++ + ++
Sbjct: 468 QRKRPGSPAAQASKRASEMACQQPTQPPDADQ 499
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP,
aminoacyl-tRNA synthetase, ATP-binding,
charcot-marie-tooth disease, disease mutation; HET: B4P;
2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A*
2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A
Length = 693
Score = 26.6 bits (58), Expect = 7.4
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 162 RRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKK 206
R+ K++K + + K + K +K + KE + K + K
Sbjct: 25 RKLKEDKAPQVDVDKAVAELKARKRVLEAKELALQPKDDIVDRAK 69
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 92
Score = 25.1 bits (55), Expect = 7.6
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKK 204
+EK K EEK K ++ + K+ +++ + K
Sbjct: 52 EEKLKYEEKATKDLERYNSQMKRAIEQESQMSLKDSGPS 90
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 26.3 bits (57), Expect = 7.6
Identities = 10/54 (18%), Positives = 20/54 (37%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKK 211
+ K+ + + +K KK K+ KK K++K ++ K
Sbjct: 132 MGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKA 185
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 26.3 bits (57), Expect = 7.9
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 185 KNKKKKKEKKKKKKKKKKKKKKKKKK 210
KN K KK KK+ +K+
Sbjct: 5 KNPGLKAGGGKKGAKKRTIDPLSRKE 30
>3gqu_A NOP5P protein; RNA binding domain, RNA binding protein; 2.50A
{Pyrococcus horikoshii} PDB: 3gqx_B
Length = 169
Score = 26.1 bits (57), Expect = 8.0
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 166 KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKK 201
+ KK+ E + K+ K+K + K++K+E+K +K K+
Sbjct: 134 ELKKELEARIKEIKEKYPRPPKRRKEERKGRKPWKE 169
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 156
Score = 26.0 bits (57), Expect = 8.0
Identities = 15/36 (41%), Positives = 16/36 (44%)
Query: 168 KKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKK 203
K KKE K + K K K KK K KKKK
Sbjct: 4 KAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKK 39
Score = 25.6 bits (56), Expect = 9.1
Identities = 14/36 (38%), Positives = 16/36 (44%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKK 210
K KK+ K + K K K KK K KKKK
Sbjct: 4 KAKKEAPAPPKAEAKAKALKAKKAVLKGVHSHKKKK 39
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 553
Score = 26.5 bits (59), Expect = 8.1
Identities = 10/61 (16%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 162 RRRKKEKKKKEEKK--------KKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
R+ + K+ E ++++++ ++ + E+K+KK+K ++ K + ++
Sbjct: 40 RKMAPQVKEAVEAAVERVNSLSPEEQQQEMERLGLEITERKQKKRKGLRELAGVKGEVVL 99
Query: 214 R 214
R
Sbjct: 100 R 100
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein,
translation; NMR {Homo sapiens} SCOP: d.58.7.1
Length = 103
Score = 25.5 bits (56), Expect = 8.4
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 158 NSHRRRRKKEKKKK---------EEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKK 208
+ + RR K K E KK + +K K+ K KK +++K
Sbjct: 39 LNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQKYKETDLLILFKDDYFAKKNEERK 98
Query: 209 KKKI 212
+ K+
Sbjct: 99 QNKV 102
>1914_A Signal recognition particle 9/14 fusion protein; ALU domain, RNA
binding, signal recognition particle (SRP), translation
regulation; 2.53A {Mus musculus} SCOP: d.49.1.1 d.49.1.1
PDB: 1e8o_A* 1e8s_A 1ry1_C*
Length = 232
Score = 26.1 bits (57), Expect = 9.5
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 180 KKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIM 213
KK+ KKNK KK + + ++K ++ M
Sbjct: 114 KKRDKKNKSKKSKPAQGGEQKLISEEDDSAGSPM 147
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A
{Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A*
1ss9_A*
Length = 311
Score = 25.9 bits (57), Expect = 9.8
Identities = 5/55 (9%), Positives = 19/55 (34%)
Query: 158 NSHRRRRKKEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKI 212
+ + + ++ + K + K+ ++ ++K + +KI
Sbjct: 256 CTAWGAERFTELAGSLTTVPEEWRGKLAVPHRMFSTKRMLQRWRRKLSARFLRKI 310
>2riq_A Poly [ADP-ribose] polymerase 1; Zn-binding domain, Zn ribbon, Zn
finger, ADP-ribosylation, D damage, DNA repair,
DNA-binding, glycosyltransferase; 1.70A {Homo sapiens}
PDB: 2jvn_A
Length = 160
Score = 25.8 bits (56), Expect = 9.9
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 175 KKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKKKKKKIMRKEE 217
+ KKK KK+K+K K EK K + K + KK+ +
Sbjct: 4 EVAKKKSKKEKDKDSKLEKALKAQNDLIWNIKDELKKVCSTND 46
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 26.2 bits (57), Expect = 10.0
Identities = 9/70 (12%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
Query: 150 IHPSDPVANSHRRRRK--KEKKKKEEKKKKKKKKKKKKNKKKKKEKKKKKKKKKKKKKKK 207
I ++ RK +K ++ + K+ + +K++ + K+ + ++ +K
Sbjct: 104 IVDLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKM 163
Query: 208 KKKKIMRKEE 217
+ K +
Sbjct: 164 DADINVTKAD 173
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.126 0.360
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,296,459
Number of extensions: 205450
Number of successful extensions: 9840
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5823
Number of HSP's successfully gapped: 1896
Length of query: 218
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 128
Effective length of database: 4,188,903
Effective search space: 536179584
Effective search space used: 536179584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.7 bits)