BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17902
(454 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 135/292 (46%), Gaps = 34/292 (11%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKW-----LLETRSKVCSSPFVKTDRKSYPPIXX 195
H +S+ +A D + + SA D + W LL+T + SS + ++ P
Sbjct: 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW----GVAFSP--- 313
Query: 196 XXXXXXXXXXXSGDNNSNIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSI 255
S ++ +KLW+ + +HL T TGH + + G+A S + T+ S+S+D+++
Sbjct: 314 -----DGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV 368
Query: 256 KVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSR 315
K+WN + ++TL GH S++ + + I+S DK+V++W + GHS
Sbjct: 369 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 427
Query: 316 GI-DMTRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLH 374
+ + +DQ + +D T+ LW+ ++ + G+ SS + VA
Sbjct: 428 SVWGVAFSPDDQTIASASDDKTVKLWNRNGQL----LQTLTGHSSS------VRGVAFSP 477
Query: 375 NSDLVASGSYDGCVKLWKITPKRTLEFLQDIPL-SGVINSLVFTSDHKHLVA 425
+ +AS S D VKLW R + LQ + S + + F+ D + + +
Sbjct: 478 DGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 525
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 74/294 (25%), Positives = 135/294 (45%), Gaps = 34/294 (11%)
Query: 139 KPHRASITCIAVTSDSKHVYSACKDGIIIKW-----LLETRSKVCSSPFVKTDRKSYPPI 193
+ H +S+ +A + D + + SA D + W LL+T + SS + ++ P
Sbjct: 13 EAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW----GVAFSP- 67
Query: 194 XXXXXXXXXXXXXSGDNNSNIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDR 253
S ++ +KLW+ + + L T TGH + + G+A S + T+ S+S+D+
Sbjct: 68 -------DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDK 120
Query: 254 SIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGH 313
++K+WN + ++TL GH S++ + + I+S DK+V++W + GH
Sbjct: 121 TVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH 179
Query: 314 SRGIDMTRRVNDQQFI-TCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVAC 372
S + D Q I + +D T+ LW+ ++ + G+ SS + VA
Sbjct: 180 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSS------VRGVAF 229
Query: 373 LHNSDLVASGSYDGCVKLWKITPKRTLEFLQDIPL-SGVINSLVFTSDHKHLVA 425
+ +AS S D VKLW R + LQ + S +N + F D + + +
Sbjct: 230 SPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVNGVAFRPDGQTIAS 279
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 119/259 (45%), Gaps = 33/259 (12%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKW-----LLETRSKVCSSPFVKTDRKSYPPIXX 195
H +S+ +A + D + + SA D + W LL+T + SS +
Sbjct: 343 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS------------VRG 390
Query: 196 XXXXXXXXXXXSGDNNSNIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSI 255
S ++ +KLW+ + + L T TGH + + G+A S + T+ S+S+D+++
Sbjct: 391 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450
Query: 256 KVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHS- 314
K+WN + ++TL GH S++ + + I+S DK+V++W + GHS
Sbjct: 451 KLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 509
Query: 315 --RGIDMTRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVAC 372
RG+ + + Q + +D T+ LW+ ++ + G+ SS + VA
Sbjct: 510 SVRGVAFSP--DGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSS------VWGVAF 557
Query: 373 LHNSDLVASGSYDGCVKLW 391
+ +AS S D VKLW
Sbjct: 558 SPDGQTIASASSDKTVKLW 576
Score = 79.7 bits (195), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 68/271 (25%), Positives = 121/271 (44%), Gaps = 33/271 (12%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKW-----LLETRSKVCSSPFVKTDRKSYPPIXX 195
H +S+ +A + D + + SA D + W LL+T + SS +
Sbjct: 179 HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS------------VRG 226
Query: 196 XXXXXXXXXXXSGDNNSNIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSI 255
S ++ +KLW+ + + L T TGH + + G+A + T+ S+S+D+++
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV 286
Query: 256 KVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSR 315
K+WN + ++TL GH S++ + + I+S DK+V++W + GHS
Sbjct: 287 KLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSS 345
Query: 316 GIDMTRRVNDQQFI-TCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLH 374
+ D Q I + +D T+ LW+ ++ + G+ SS + VA
Sbjct: 346 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSS------VRGVAFSP 395
Query: 375 NSDLVASGSYDGCVKLWKITPKRTLEFLQDI 405
+ +AS S D VKLW R + LQ +
Sbjct: 396 DGQTIASASDDKTVKLW----NRNGQLLQTL 422
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 58/138 (42%), Gaps = 15/138 (10%)
Query: 269 LFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQF 328
L H S++ + + I+S DK+V++W + GHS + D Q
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 329 I-TCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGC 387
I + +D T+ LW+ ++ + G+ SS + VA + +AS S D
Sbjct: 72 IASASDDKTVKLWNRNGQL----LQTLTGHSSS------VRGVAFSPDGQTIASASDDKT 121
Query: 388 VKLWKITPKRTLEFLQDI 405
VKLW R + LQ +
Sbjct: 122 VKLW----NRNGQLLQTL 135
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 114/259 (44%), Gaps = 14/259 (5%)
Query: 126 LANATVVCTKFNGKPHRASITCIAVTSDSKHVY-SACKDGIIIKWLLETRSKVCSSPFVK 184
+A+ V+ + + H +T +A ++ ++ SA +D +I W L + P V+
Sbjct: 1 MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-VR 59
Query: 185 TDRKSYPPIXXXXXXXXXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFEC 243
+ + + S + ++LW ++ E F GHK+ + + I +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 244 DTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRV------ISSGGTDKSV 297
+ S S D++IKVW I+ + + TL GH ++ + ++ + I S G DK V
Sbjct: 120 SMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 298 RVWKI-QEESQLVFNGHSRGIDMTRRVNDQQFI-TCGEDGTLSLWSILKKVPTHTIPVAH 355
+ W + Q + + F GH+ I+ D I + G+DG + LW++ K +T+
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 356 GYDSSSSEPN--WITSVAC 372
S + PN W+ +
Sbjct: 239 EVFSLAFSPNRYWLAAATA 257
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 23/215 (10%)
Query: 224 LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILA 283
+ +F GH + ++ + S+S D+++++W++ + GH+S + S+DI
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 284 KNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQ-------FITCGEDGT 336
K +I SG DK+++VW I+ + GH+ + R V +++ I+ G D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 337 LSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPK 396
+ W+ L + + H + I ++ + L+AS DG + LW + K
Sbjct: 178 VKAWN-LNQFQIEADFIGHNSN--------INTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 397 RTLEFL--QDIPLSGVINSLVFTSDHKHLVAGIGT 429
+ + L QD + SL F+ + L A T
Sbjct: 229 KAMYTLSAQD-----EVFSLAFSPNRYWLAAATAT 258
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 114/259 (44%), Gaps = 14/259 (5%)
Query: 126 LANATVVCTKFNGKPHRASITCIAVTSDSKHVY-SACKDGIIIKWLLETRSKVCSSPFVK 184
+A+ V+ + + H +T +A ++ ++ SA +D +I W L + P V+
Sbjct: 1 MASNEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-VR 59
Query: 185 TDRKSYPPIXXXXXXXXXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFEC 243
+ + + S + ++LW ++ E F GHK+ + + I +
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 244 DTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRV------ISSGGTDKSV 297
+ S S D++IKVW I+ + + TL GH ++ + ++ + I S G DK V
Sbjct: 120 SMIISGSRDKTIKVWTIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMV 178
Query: 298 RVWKI-QEESQLVFNGHSRGIDMTRRVNDQQFI-TCGEDGTLSLWSILKKVPTHTIPVAH 355
+ W + Q + + F GH+ I+ D I + G+DG + LW++ K +T+
Sbjct: 179 KAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD 238
Query: 356 GYDSSSSEPN--WITSVAC 372
S + PN W+ +
Sbjct: 239 EVFSLAFSPNRYWLAAATA 257
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 23/215 (10%)
Query: 224 LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILA 283
+ +F GH + ++ + S+S D+++++W++ + GH+S + S+DI
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 284 KNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQ-------FITCGEDGT 336
K +I SG DK+++VW I+ + GH+ + R V +++ I+ G D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 337 LSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPK 396
+ W+ L + + H + I ++ + L+AS DG + LW + K
Sbjct: 178 VKAWN-LNQFQIEADFIGHNSN--------INTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 397 RTLEFL--QDIPLSGVINSLVFTSDHKHLVAGIGT 429
+ + L QD + SL F+ + L A T
Sbjct: 229 KAMYTLSAQD-----EVFSLAFSPNRYWLAAATAT 258
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 14/244 (5%)
Query: 141 HRASITCIAVTSDSKHVY-SACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXX 199
H +T +A ++ ++ SA +D +I W L + P V++ + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-VRSFKGHSHIVQDCTLT 74
Query: 200 XXXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVW 258
S + ++LW ++ E F GHK+ + + I + + S S D++IKVW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Query: 259 NIEDRAYVETLFGHQSAITSLDILAKNRV------ISSGGTDKSVRVWKI-QEESQLVFN 311
I+ + + TL GH ++ + ++ + I S G DK V+ W + Q + + F
Sbjct: 135 TIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFI 193
Query: 312 GHSRGIDMTRRVNDQQFI-TCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPN--WIT 368
GH+ I+ D I + G+DG + LW++ K +T+ S + PN W+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLA 253
Query: 369 SVAC 372
+
Sbjct: 254 AATA 257
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 94/215 (43%), Gaps = 23/215 (10%)
Query: 224 LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILA 283
+ +F GH + ++ + S+S D+++++W++ + GH+S + S+DI
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 284 KNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQ-------FITCGEDGT 336
K I SG DK+++VW I+ + GH+ + R V +++ I+ G D
Sbjct: 118 KASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 337 LSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPK 396
+ W+ L + + H + I ++ + L+AS DG + LW + K
Sbjct: 178 VKAWN-LNQFQIEADFIGHNSN--------INTLTASPDGTLIASAGKDGEIXLWNLAAK 228
Query: 397 RTLEFL--QDIPLSGVINSLVFTSDHKHLVAGIGT 429
+ L QD + SL F+ + L A T
Sbjct: 229 KAXYTLSAQD-----EVFSLAFSPNRYWLAAATAT 258
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 14/244 (5%)
Query: 141 HRASITCIAVTSDSKHVY-SACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXX 199
H +T +A ++ ++ SA +D +I W L + P V++ + +
Sbjct: 10 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-VRSFKGHSHIVQDCTLT 68
Query: 200 XXXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVW 258
S + ++LW ++ E F GHK+ + + I + + S S D++IKVW
Sbjct: 69 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Query: 259 NIEDRAYVETLFGHQSAITSLDILAKNRV------ISSGGTDKSVRVWKI-QEESQLVFN 311
I+ + + TL GH ++ + ++ + I S G DK V+ W + Q + + F
Sbjct: 129 TIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 187
Query: 312 GHSRGIDMTRRVNDQQFI-TCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPN--WIT 368
GH+ I+ D I + G+DG + LW++ K +T+ S + PN W+
Sbjct: 188 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 247
Query: 369 SVAC 372
+
Sbjct: 248 AATA 251
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 23/215 (10%)
Query: 224 LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILA 283
+ +F GH + ++ + S+S D+++++W++ + GH+S + S+DI
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 284 KNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQ-------FITCGEDGT 336
K +I SG DK+++VW I+ + GH+ + R V +++ I+ G D
Sbjct: 112 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 171
Query: 337 LSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPK 396
+ W+ L + + H + I ++ + L+AS DG + LW + K
Sbjct: 172 VKAWN-LNQFQIEADFIGHNSN--------INTLTASPDGTLIASAGKDGEIMLWNLAAK 222
Query: 397 RTLEFL--QDIPLSGVINSLVFTSDHKHLVAGIGT 429
+ + L QD + SL F+ + L A T
Sbjct: 223 KAMYTLSAQD-----EVFSLAFSPNRYWLAAATAT 252
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 14/244 (5%)
Query: 141 HRASITCIAVTSDSKHVY-SACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXX 199
H +T +A ++ ++ SA +D +I W L + P V++ + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-VRSFKGHSHIVQDCTLT 74
Query: 200 XXXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVW 258
S + ++LW ++ E F GHK+ + + I + + S S D++IKVW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 259 NIEDRAYVETLFGHQSAITSLDILAKNRV------ISSGGTDKSVRVWKI-QEESQLVFN 311
I+ + + TL GH ++ + ++ + I S G DK V+ W + Q + + F
Sbjct: 135 TIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193
Query: 312 GHSRGIDMTRRVNDQQFI-TCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPN--WIT 368
GH+ I+ D I + G+DG + LW++ K +T+ S + PN W+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253
Query: 369 SVAC 372
+
Sbjct: 254 AATA 257
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 23/215 (10%)
Query: 224 LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILA 283
+ +F GH + ++ + S+S D+++++W++ + GH+S + S+DI
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 284 KNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQ-------FITCGEDGT 336
K +I SG DK+++VW I+ + GH+ + R V +++ I+ G D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 337 LSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPK 396
+ W+ L + + H + I ++ + L+AS DG + LW + K
Sbjct: 178 VKAWN-LNQFQIEADFIGHNSN--------INTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 397 RTLEFL--QDIPLSGVINSLVFTSDHKHLVAGIGT 429
+ + L QD + SL F+ + L A T
Sbjct: 229 KAMYTLSAQD-----EVFSLAFSPNRYWLAAATAT 258
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 91/209 (43%), Gaps = 27/209 (12%)
Query: 227 FTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNR 286
GH A ++ +A+S + S+S D S+++WN+++ GH + S+ NR
Sbjct: 63 LEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNR 122
Query: 287 VISSGGTDKSVRVWKIQEESQ--LVFNGHSRGIDMTR---RVNDQQFITCGEDGTLSLWS 341
I SGG D ++RVW ++ E L H+ + R ++ ++ G D + +W
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 342 -----ILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPK 396
++ + HT N++TSV + L AS DG +LW +T
Sbjct: 183 LATGRLVTDLKGHT--------------NYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 397 RTLEFLQDIPLSGVINSLVFTSDHKHLVA 425
E L ++ IN + F+ + + A
Sbjct: 229 ---EALSEMAAGAPINQICFSPNRYWMCA 254
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 89/193 (46%), Gaps = 24/193 (12%)
Query: 227 FTGHKAPITGLAISFECDT---LYSSSNDRSIKVWNIE-DRAYVET--------LFGHQS 274
TGH+ +T LA +T + S+S D+++ W DR E L GH +
Sbjct: 9 LTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHSA 68
Query: 275 AITSLDILAKNRVISSGGTDKSVRVWKIQE-ESQLVFNGHSRGI-DMTRRVNDQQFITCG 332
++ + + S D S+R+W +Q + Q F GH++ + + +++Q ++ G
Sbjct: 69 FVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGG 128
Query: 333 EDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSD--LVASGSYDGCVKL 390
D L +W++ K HT+ S + +W++ V + D ++ SG +D VK+
Sbjct: 129 RDNALRVWNV-KGECMHTL-------SRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKV 180
Query: 391 WKITPKRTLEFLQ 403
W + R + L+
Sbjct: 181 WDLATGRLVTDLK 193
Score = 35.4 bits (80), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 8/139 (5%)
Query: 213 NIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFG 271
+++LW+ + + + F GH + +A S + + S D +++VWN++ G
Sbjct: 90 SLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRG 149
Query: 272 HQSAITSLDILAKN---RVISSGGTDKSVRVWKIQEESQLV--FNGHSRGIDMTRRVNDQ 326
+ S + + VI SGG D V+VW + +LV GH+ + D
Sbjct: 150 AHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLA-TGRLVTDLKGHTNYVTSVTVSPDG 208
Query: 327 QFITCGE-DGTLSLWSILK 344
+ DG LW + K
Sbjct: 209 SLCASSDKDGVARLWDLTK 227
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 107/244 (43%), Gaps = 14/244 (5%)
Query: 141 HRASITCIAVTSDSKHVY-SACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXX 199
H +T +A ++ ++ SA +D +I W L + P V++ + +
Sbjct: 16 HNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVP-VRSFKGHSHIVQDCTLT 74
Query: 200 XXXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVW 258
S + ++LW ++ E F GHK+ + + I + + S S D++IKVW
Sbjct: 75 ADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 259 NIEDRAYVETLFGHQSAITSLDILAKNRV------ISSGGTDKSVRVWKI-QEESQLVFN 311
I+ + + TL GH ++ + ++ + I S G DK V+ W + Q + + F
Sbjct: 135 TIKGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFI 193
Query: 312 GHSRGIDMTRRVNDQQFI-TCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPN--WIT 368
GH+ I+ D I + G+DG + LW++ K +T+ S + PN W+
Sbjct: 194 GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLA 253
Query: 369 SVAC 372
+
Sbjct: 254 AATA 257
Score = 66.2 bits (160), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 96/215 (44%), Gaps = 23/215 (10%)
Query: 224 LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILA 283
+ +F GH + ++ + S+S D+++++W++ + GH+S + S+DI
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 284 KNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQ-------FITCGEDGT 336
K +I SG DK+++VW I+ + GH+ + R V +++ I+ G D
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 337 LSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPK 396
+ W+ L + + H + I ++ + L+AS DG + LW + K
Sbjct: 178 VKAWN-LNQFQIEADFIGHNSN--------INTLTASPDGTLIASAGKDGEIMLWNLAAK 228
Query: 397 RTLEFL--QDIPLSGVINSLVFTSDHKHLVAGIGT 429
+ + L QD + SL F+ + L A T
Sbjct: 229 KAMYTLSAQD-----EVFSLAFSPNRYWLAAATAT 258
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 29/228 (12%)
Query: 224 LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILA 283
+ T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + +
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 284 KNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWS 341
+ ++ S DK++++W + L GHS + I G D ++ +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 342 I-----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPK 396
+ LK +P H+ PV ++V + L+ S SYDG ++W
Sbjct: 139 VKTGMCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 397 RTLEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
+ L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 185 QCLKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 227
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 205
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVY 265
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 23/158 (14%)
Query: 262 DRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQE-ESQLVFNGHSRGI-DM 319
+ A + TL GH A++S+ ++S DK +++W + + + +GH GI D+
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 320 TRRVNDQQFITCGEDGTLSLWSI-----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLH 374
+ ++ +D TL +W + LK + H+ N++
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP 120
Query: 375 NSDLVASGSYDGCVKLWKITPKRTLEFL--QDIPLSGV 410
S+L+ SGS+D V++W + L+ L P+S V
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 29/228 (12%)
Query: 224 LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILA 283
+ T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + +
Sbjct: 19 MFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 78
Query: 284 KNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWS 341
+ ++ S DK++++W + L GHS + I G D ++ +W
Sbjct: 79 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 342 I-----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPK 396
+ LK +P H+ PV ++V + L+ S SYDG ++W
Sbjct: 139 VKTGMCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 397 RTLEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
+ L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 185 QCLKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNDLKLWDYSKG 227
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D+
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKC 229
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQ 279
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 205
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++++KLW S + L T+TGHK + +F + S S D +
Sbjct: 206 NGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVY 265
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 23/158 (14%)
Query: 262 DRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQE-ESQLVFNGHSRGI-DM 319
+ A + TL GH A++S+ ++S DK +++W + + + +GH GI D+
Sbjct: 15 NYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 320 TRRVNDQQFITCGEDGTLSLWSI-----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLH 374
+ ++ +D TL +W + LK + H+ N++
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHS--------------NYVFCCNFNP 120
Query: 375 NSDLVASGSYDGCVKLWKITPKRTLEFL--QDIPLSGV 410
S+L+ SGS+D V++W + L+ L P+S V
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAV 158
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 100 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 160 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 206 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 246
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 69 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 128
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 129 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 188
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 189 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 248
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 298
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 170 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 224
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 225 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 284
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 285 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 102 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 162 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 207
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 208 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 248
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 71 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 130
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 131 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 190
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 191 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 250
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 251 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 300
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 172 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 226
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 227 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 286
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 287 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 333
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 144 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 190 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 230
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 53 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 112
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 113 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 172
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 173 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 208
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 74 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 134 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 180 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 220
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 43 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 102
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 103 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 162
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 163 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 222
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 272
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 144 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 198
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 199 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 258
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 259 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 138 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 184 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 224
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 47 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 106
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 202
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 78 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 138 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 184 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 224
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 47 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 106
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 226
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 276
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 202
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 203 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 262
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 263 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 79 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 139 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 184
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 185 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 225
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 48 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 107
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 108 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 167
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 168 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 227
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 277
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 149 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 203
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 204 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 263
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 264 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 310
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 144 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 190 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 230
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 53 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 112
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 113 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 172
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 173 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 208
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 83 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 143 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 188
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 189 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 229
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 52 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 111
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 112 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 171
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 172 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 231
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 281
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 153 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 207
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 208 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 267
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 268 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 314
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 84 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 144 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 190 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 230
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 53 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 112
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 113 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 172
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 173 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 232
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 282
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 154 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 208
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 209 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 268
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 269 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 77 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 137 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 183 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 223
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 46 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 105
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 106 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 165
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 166 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 225
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 275
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 147 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 201
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 202 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 261
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 262 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 308
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 95 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 155 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 200
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 201 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 241
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 64 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 123
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 124 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 183
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 184 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 243
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 293
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 165 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 219
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 220 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 279
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 280 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 326
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 18/193 (9%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH + + FE + + + ++D+ I+V++ ++ ++ L GH + +L A
Sbjct: 116 TLRGHXTSVI-TCLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALK-YAHG 173
Query: 286 RVISSGGTDKSVRVWKIQEE-SQLVFNGHS---RGIDMTRRVNDQQFITCGEDGTLSLWS 341
++ SG TD++VRVW I++ VF GH+ R +D+ N + +T D TL +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 342 ILKK--VPTHTIPVAHGYDSSSSEPN-WITSVACLH---------NSDLVASGSYDGCVK 389
+ K+ VP H + + E N + V H + ++V SGSYD +
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLI 293
Query: 390 LWKITPKRTLEFL 402
+W + + L L
Sbjct: 294 VWDVAQXKCLYIL 306
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 229 GHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVI 288
GH A + +S + + S S D ++ VW++ + L GH I S + +
Sbjct: 268 GHXASVR--TVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 289 SSGGTDKSVRVWKIQE-ESQLVFNGHSRGIDMTRRVNDQQFITCGEDGTLSLW 340
S D ++R+W ++ E GH+ + + R++D+ ++ DG++ W
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQGHTALVGLL-RLSDKFLVSAAADGSIRGW 377
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 61/137 (44%), Gaps = 3/137 (2%)
Query: 207 SGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAY 265
SG ++ + +W + + L+ +GH I E S+S D +I++W++E+
Sbjct: 285 SGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGEL 344
Query: 266 VETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVND 325
TL GH + + L + ++ + S D S+R W + S+ H+ +T
Sbjct: 345 XYTLQGHTALVGLLRL--SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVS 402
Query: 326 QQFITCGEDGTLSLWSI 342
+ G + +++++
Sbjct: 403 DNILVSGSENQFNIYNL 419
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 101/223 (45%), Gaps = 30/223 (13%)
Query: 207 SGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIE---D 262
+G ++S +++W ++ E L+T H + L + F + + S DRSI VW++ D
Sbjct: 188 TGSSDSTVRVWDVNTGEMLNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTD 245
Query: 263 RAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQE-ESQLVFNGHSRGIDMTR 321
L GH++A+ +D ++ I S D++++VW E NGH RGI
Sbjct: 246 ITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-ACL 302
Query: 322 RVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLH-NSDLVA 380
+ D+ ++ D T+ LW I + V G++ V C+ ++ +
Sbjct: 303 QYRDRLVVSGSSDNTIRLWDIECGA---CLRVLEGHEEL---------VRCIRFDNKRIV 350
Query: 381 SGSYDGCVKLWKI-------TPKRTLEFLQDIPLSGVINSLVF 416
SG+YDG +K+W + P TL + SG + L F
Sbjct: 351 SGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF 393
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 103/226 (45%), Gaps = 27/226 (11%)
Query: 207 SGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAY 265
SG ++ IK+W ++LE TGH + L + ++ + + S+D +++VW++
Sbjct: 148 SGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDSTVRVWDVNTGEM 205
Query: 266 VETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL----VFNGHSRGIDMTR 321
+ TL H A+ L + N ++ + D+S+ VW + + + V GH +++
Sbjct: 206 LNTLIHHCEAV--LHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV- 262
Query: 322 RVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSD-LVA 380
+D+ ++ D T+ +W+ T T + +ACL D LV
Sbjct: 263 DFDDKYIVSASGDRTIKVWN------TSTCEFVRTLNGHKR------GIACLQYRDRLVV 310
Query: 381 SGSYDGCVKLWKITPKRTLEFLQDIPLSGVINSLVFTSDHKHLVAG 426
SGS D ++LW I L L+ ++ + F D+K +V+G
Sbjct: 311 SGSSDNTIRLWDIECGACLRVLEG--HEELVRCIRF--DNKRIVSG 352
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 141 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 187 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 227
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 205
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK+++++K
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLYK 312
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 65.1 bits (157), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L SSS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 141 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 187 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 227
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 205
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK+++++K
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLFK 312
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 92/193 (47%), Gaps = 18/193 (9%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH + + FE + + + ++D+ I+V++ ++ ++ L GH + +L A
Sbjct: 116 TLRGHMTSVI-TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK-YAHG 173
Query: 286 RVISSGGTDKSVRVWKIQEE-SQLVFNGHS---RGIDMTRRVNDQQFITCGEDGTLSLWS 341
++ SG TD++VRVW I++ VF GH+ R +D+ N + +T D TL +W
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 342 ILKK--VPTHTIPVAHGYDSSSSEPN-WITSVACLH---------NSDLVASGSYDGCVK 389
+ K+ VP H + + E N + V H + ++V SGSYD +
Sbjct: 234 LPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLI 293
Query: 390 LWKITPKRTLEFL 402
+W + + L L
Sbjct: 294 VWDVAQMKCLYIL 306
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/137 (20%), Positives = 63/137 (45%), Gaps = 3/137 (2%)
Query: 207 SGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAY 265
SG ++ + +W + ++ L+ +GH I E S+S D +I++W++E+
Sbjct: 285 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 344
Query: 266 VETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVND 325
+ TL GH + + L + ++ + S D S+R W + S+ H+ +T
Sbjct: 345 MYTLQGHTALVGLLRL--SDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVS 402
Query: 326 QQFITCGEDGTLSLWSI 342
+ G + +++++
Sbjct: 403 DNILVSGSENQFNIYNL 419
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 229 GHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVI 288
GH A + +S + + S S D ++ VW++ + L GH I S + +
Sbjct: 268 GHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRC 325
Query: 289 SSGGTDKSVRVWKIQE-ESQLVFNGHSRGIDMTRRVNDQQFITCGEDGTLSLW 340
S D ++R+W ++ E GH+ + + R++D+ ++ DG++ W
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLL-RLSDKFLVSAAADGSIRGW 377
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 95/202 (47%), Gaps = 20/202 (9%)
Query: 207 SGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAY 265
SG ++ +++W + + LH GH A + + ++ + S + D +KVW+ E
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPETETC 271
Query: 266 VETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVN 324
+ TL GH + + SL + V SG D S+RVW ++ + + GH + + +
Sbjct: 272 LHTLQGHTNRVYSLQFDGIHVV--SGSLDTSIRVWDVETGNCIHTLTGH-QSLTSGMELK 328
Query: 325 DQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLH-NSDLVASGS 383
D ++ D T+ +W I T+ + + S+ V CL N + V + S
Sbjct: 329 DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSA---------VTCLQFNKNFVITSS 379
Query: 384 YDGCVKLWKITPKRTLEFLQDI 405
DG VKLW + +T EF++++
Sbjct: 380 DDGTVKLWDL---KTGEFIRNL 398
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 103/228 (45%), Gaps = 36/228 (15%)
Query: 207 SGDNNSNIKLWSS-SLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAY 265
SG +++ +K+WS+ + + L T GH + + + + S S DR++KVWN E
Sbjct: 134 SGSDDNTLKVWSAVTGKCLRTLVGHTGGV--WSSQMRDNIIISGSTDRTLKVWNAETGEC 191
Query: 266 VETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVN 324
+ TL+GH S + + L + RV+ SG D ++RVW I+ L V GH + + +
Sbjct: 192 IHTLYGHTSTVRCMH-LHEKRVV-SGSRDATLRVWDIETGQCLHVLMGHVAAVRCV-QYD 248
Query: 325 DQQFITCGEDGTLSLW-----SILKKVPTHT----------IPVAHGYDSSSSEPNWITS 369
++ ++ D + +W + L + HT I V G +S + +
Sbjct: 249 GRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVET 308
Query: 370 VACLHN--------------SDLVASGSYDGCVKLWKITPKRTLEFLQ 403
C+H +++ SG+ D VK+W I + L+ LQ
Sbjct: 309 GNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ 356
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/191 (25%), Positives = 91/191 (47%), Gaps = 21/191 (10%)
Query: 238 AISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSV 297
+ F + + S S+D ++KVW+ + TL GH + S + ++ +I SG TD+++
Sbjct: 124 CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM--RDNIIISGSTDRTL 181
Query: 298 RVWKIQE-ESQLVFNGHSRGIDMTRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHG 356
+VW + E GH+ + +++++ ++ D TL +W I H + + H
Sbjct: 182 KVWNAETGECIHTLYGHTSTV-RCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL-MGH- 238
Query: 357 YDSSSSEPNWITSVACL-HNSDLVASGSYDGCVKLWKITPKRTLEFLQDIPLSGVINSLV 415
+ +V C+ ++ V SG+YD VK+W + L LQ + + SL
Sbjct: 239 ----------VAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQ--GHTNRVYSLQ 286
Query: 416 FTSDHKHLVAG 426
F D H+V+G
Sbjct: 287 F--DGIHVVSG 295
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 82/167 (49%), Gaps = 18/167 (10%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H A++ C V D + V S D ++ W ET + C + Y
Sbjct: 238 HVAAVRC--VQYDGRRVVSGAYDFMVKVWDPETET--CLHTLQGHTNRVYS------LQF 287
Query: 201 XXXXXXSGDNNSNIKLWSSSLEH-LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWN 259
SG +++I++W + +HT TGH++ +G+ + + + L S + D ++K+W+
Sbjct: 288 DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWD 345
Query: 260 IEDRAYVETLFG---HQSAITSLDILAKNRVISSGGTDKSVRVWKIQ 303
I+ ++TL G HQSA+T L KN VI+S D +V++W ++
Sbjct: 346 IKTGQCLQTLQGPNKHQSAVTCLQ-FNKNFVITS-SDDGTVKLWDLK 390
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 29/226 (12%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH ++ + S + L +SS D+ IK+W D + +T+ GH+ I+ + + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 286 RVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSI- 342
++ S DK++++W + L GHS + I G D ++ +W +
Sbjct: 81 NLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 343 ----LKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRT 398
LK +P H+ PV ++V + L+ S SYDG ++W +
Sbjct: 141 TGKCLKTLPAHSDPV--------------SAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 186
Query: 399 LEFLQD---IPLSGVINSLVFTSDHKHLVAGIGTEHRFGRWKTIKG 441
L+ L D P+S V F+ + K+++A ++ W KG
Sbjct: 187 LKTLIDDDNPPVSFV----KFSPNGKYILAAT-LDNTLKLWDYSKG 227
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 40/230 (17%)
Query: 214 IKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
IK+W + T +GHK I+ +A S + + L S+S+D+++K+W++ ++TL GH
Sbjct: 50 IKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVNDQQFI-T 330
+ + + ++ +I SG D+SVR+W ++ L HS + D I +
Sbjct: 110 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 169
Query: 331 CGEDGTLSLW-------------------SILKKVPTHTIPVAHGYDSS----------- 360
DG +W S +K P +A D++
Sbjct: 170 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKC 229
Query: 361 -------SSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
+E I + + + SGS D V +W + K ++ LQ
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQ 279
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 11/167 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H ++ + D + S+ DG+ W +T S C + D PP+
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW--DTASGQCLKTLIDDDN---PPVSFVKFSP 205
Query: 201 XXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDT---LYSSSNDRSIK 256
+ ++ +KLW S + L T+TGHK + +F + S S D +
Sbjct: 206 NGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVY 265
Query: 257 VWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGG--TDKSVRVWK 301
+WN++ + V+ L GH + S +I+S DK++++WK
Sbjct: 266 IWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 78/184 (42%), Gaps = 11/184 (5%)
Query: 215 KLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQS 274
K W + +GH++P+T + + S+S D +IKVW+ E + TL GH
Sbjct: 92 KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTD 151
Query: 275 AITSLDILAKNRVISSGGTDKSVRVWKIQE-ESQLVFNGHSRGI-DMTRRVNDQQFITCG 332
++ + ++++S D ++++W Q E +GH + ++ N ++
Sbjct: 152 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 211
Query: 333 EDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWK 392
D T+ +W + T + W+ V + L+AS S D V++W
Sbjct: 212 RDKTIKMWEVQTGYCVKTF---------TGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 393 ITPK 396
+ K
Sbjct: 263 VATK 266
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 64/315 (20%), Positives = 119/315 (37%), Gaps = 40/315 (12%)
Query: 135 KFNGKPHRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIX 194
K+ HR+ +T + + SA +D I W ET F +T + +
Sbjct: 101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET------GDFERTLKGHTDSVQ 154
Query: 195 XXXXXXXXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDR 253
S + IKLW E + T GH ++ ++I D + S+S D+
Sbjct: 155 DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 214
Query: 254 SIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQ-EESQLVFNG 312
+IK+W ++ V+T GH+ + + +I+S D++VRVW + +E +
Sbjct: 215 TIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE 274
Query: 313 HSRGIDMTRRVNDQQFITCGE---------------------DGTLSLWSILKKVPTHTI 351
H ++ + + + E D T+ +W + + T+
Sbjct: 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Query: 352 PVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQDIPLSGVI 411
G+D NW+ V + S + D +++W KR ++ L +
Sbjct: 335 V---GHD------NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN--AHEHFV 383
Query: 412 NSLVFTSDHKHLVAG 426
SL F ++V G
Sbjct: 384 TSLDFHKTAPYVVTG 398
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Query: 207 SGDNNSNIKLWSSSLEH-LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAY 265
SG + IK+W S L T GH + G+ + S ++D++++VW+ +++
Sbjct: 313 SGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC 372
Query: 266 VETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQ 303
++TL H+ +TSLD + +G D++V+VW+ +
Sbjct: 373 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 93/209 (44%), Gaps = 32/209 (15%)
Query: 207 SGDNNSNIKLWSSSLEH-LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNI----- 260
S + IK+W + + TFTGH+ + + + + + S SND++++VW +
Sbjct: 209 SASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKEC 268
Query: 261 -----EDRAYVETL-FGHQSAITSLDILAKNRV---------ISSGGTDKSVRVWKIQEE 305
E R VE + + +S+ +S+ + + SG DK++++W +
Sbjct: 269 KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG 328
Query: 306 SQLV-FNGHSRGIDMTRRVNDQQFI-TCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSE 363
L+ GH + + +FI +C +D TL +W K T+ ++
Sbjct: 329 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL---------NAH 379
Query: 364 PNWITSVACLHNSDLVASGSYDGCVKLWK 392
+++TS+ + V +GS D VK+W+
Sbjct: 380 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 222 EHLHTFTGHKAPITGLAISFECDT--LYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSL 279
E+L+T + + + ++ F D L + + DR I++W+IE+R V L GH+ I SL
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 171
Query: 280 DILAKNRVISSGGTDKSVRVWKIQE-ESQLVFNGHSRGIDMTRRVNDQQFITCGE-DGTL 337
D + SG D++VR+W ++ + L + + D ++I G D +
Sbjct: 172 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 231
Query: 338 SLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKI 393
+W + + +S + + + SV + V SGS D VKLW +
Sbjct: 232 RVWDSETGFLVERLDSEN--ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 83/209 (39%), Gaps = 25/209 (11%)
Query: 214 IKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGH 272
I++W + + + GH+ I L D L S S DR++++W++ TL
Sbjct: 147 IRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206
Query: 273 QSAITSLDILAKNRVISSGGTDKSVRVW---------KIQEESQLVFNGHSRGIDMTRRV 323
T + I++G D++VRVW ++ E++ GH +
Sbjct: 207 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENE-SGTGHKDSVYSVVFT 265
Query: 324 NDQQFITCGE-DGTLSLWSILK-------KVP-THTIPVAHGYDSSSSEPNWITSVACLH 374
D Q + G D ++ LW++ K P + T V + +++ SVA
Sbjct: 266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-----IGHKDFVLSVATTQ 320
Query: 375 NSDLVASGSYDGCVKLWKITPKRTLEFLQ 403
N + + SGS D V W L LQ
Sbjct: 321 NDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 54/132 (40%), Gaps = 21/132 (15%)
Query: 207 SGDNNSNIKLWSSSLEHL--------HTFTGHKAPITGLAISFECDTLYSSSNDRSIKVW 258
+G + +++W S L + TGHK + + + + ++ S S DRS+K+W
Sbjct: 224 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283
Query: 259 NIEDRAYVE------------TLFGHQSAITSLDILAKNRVISSGGTDKSVRVW-KIQEE 305
N+++ T GH+ + S+ + I SG D+ V W K
Sbjct: 284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN 343
Query: 306 SQLVFNGHSRGI 317
L+ GH +
Sbjct: 344 PLLMLQGHRNSV 355
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 31/212 (14%)
Query: 229 GHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVI 288
GH ++ + IS + S S D ++++W++ GH + S+ + NR I
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 289 SSGGTDKSVRVWK--------IQEESQLVFNGHSRGIDMTR---RVNDQQFITCGEDGTL 337
SG DK++++W +Q+ES HS + R ++ ++CG D +
Sbjct: 121 VSGSRDKTIKLWNTLGVCKYTVQDES------HSEWVSCVRFSPNSSNPIIVSCGWDKLV 174
Query: 338 SLWSILKKVPTHTIPVAH-GYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPK 396
+W+ L T + H GY + +V + L ASG DG LW +
Sbjct: 175 KVWN-LANCKLKTNHIGHTGY---------LNTVTVSPDGSLCASGGKDGQAMLWDLNEG 224
Query: 397 RTLEFLQDIPLSGVINSLVFTSDHKHLVAGIG 428
+ L L +IN+L F+ + L A G
Sbjct: 225 KHLYTLDG---GDIINALCFSPNRYWLCAATG 253
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/303 (19%), Positives = 109/303 (35%), Gaps = 48/303 (15%)
Query: 139 KPHRASITCIAVTSD-SKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXX 197
K H +T IA T + SA +D II W L TR + + R +
Sbjct: 12 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL-TRDETNYGIPQRALRGHSHFVSDVV 70
Query: 198 XXXXXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIK 256
SG + ++LW ++ F GH + +A S + + S S D++IK
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 130
Query: 257 VWN--------IEDRAYVETL-------------------------------------FG 271
+WN ++D ++ E + G
Sbjct: 131 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 190
Query: 272 HQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQFITC 331
H + ++ + + +SGG D +W + E L I+ ++ ++
Sbjct: 191 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA 250
Query: 332 GEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLW 391
++ +W + K+ + SS +EP TS+A + + +G D V++W
Sbjct: 251 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 310
Query: 392 KIT 394
++T
Sbjct: 311 QVT 313
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 89/212 (41%), Gaps = 31/212 (14%)
Query: 229 GHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVI 288
GH ++ + IS + S S D ++++W++ GH + S+ + NR I
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 289 SSGGTDKSVRVWK--------IQEESQLVFNGHSRGIDMTR---RVNDQQFITCGEDGTL 337
SG DK++++W +Q+ES HS + R ++ ++CG D +
Sbjct: 144 VSGSRDKTIKLWNTLGVCKYTVQDES------HSEWVSCVRFSPNSSNPIIVSCGWDKLV 197
Query: 338 SLWSILKKVPTHTIPVAH-GYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPK 396
+W+ L T + H GY + +V + L ASG DG LW +
Sbjct: 198 KVWN-LANCKLKTNHIGHTGY---------LNTVTVSPDGSLCASGGKDGQAMLWDLNEG 247
Query: 397 RTLEFLQDIPLSGVINSLVFTSDHKHLVAGIG 428
+ L L +IN+L F+ + L A G
Sbjct: 248 KHLYTLDG---GDIINALCFSPNRYWLCAATG 276
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 58/303 (19%), Positives = 109/303 (35%), Gaps = 48/303 (15%)
Query: 139 KPHRASITCIAVTSD-SKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXX 197
K H +T IA T + SA +D II W L TR + + R +
Sbjct: 35 KGHNGWVTQIATTPQFPDMILSASRDKTIIMWKL-TRDETNYGIPQRALRGHSHFVSDVV 93
Query: 198 XXXXXXXXXSGDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIK 256
SG + ++LW ++ F GH + +A S + + S S D++IK
Sbjct: 94 ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIK 153
Query: 257 VWN--------IEDRAYVETL-------------------------------------FG 271
+WN ++D ++ E + G
Sbjct: 154 LWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIG 213
Query: 272 HQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQFITC 331
H + ++ + + +SGG D +W + E L I+ ++ ++
Sbjct: 214 HTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA 273
Query: 332 GEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLW 391
++ +W + K+ + SS +EP TS+A + + +G D V++W
Sbjct: 274 ATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVW 333
Query: 392 KIT 394
++T
Sbjct: 334 QVT 336
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/217 (23%), Positives = 90/217 (41%), Gaps = 21/217 (9%)
Query: 227 FTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNR 286
TGH + + +S + S S D +++W++ GH + S+ NR
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 287 VISSGGTDKSVRVWKIQEESQLVFN----GHSRGIDMTR-RVNDQQ--FITCGEDGTLSL 339
I S D+++++W E + + GH + R N Q ++ D T+ +
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 340 WSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTL 399
W++ T+ GY +++VA + L ASG DG V LW + + L
Sbjct: 546 WNLSNCKLRSTLAGHTGY---------VSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKL 596
Query: 400 EFLQDIPLSGVINSLVFTSDHKHLVAGIGTEHRFGRW 436
L+ + VI++L F+ + L A TEH W
Sbjct: 597 YSLE---ANSVIHALCFSPNRYWLCA--ATEHGIKIW 628
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 57/271 (21%), Positives = 112/271 (41%), Gaps = 26/271 (9%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXX 200
H + + ++SD + S DG + W L + V + FV + +
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLA--AGVSTRRFVGHTKD----VLSVAFSL 482
Query: 201 XXXXXXSGDNNSNIKLWSSSLEHLHTFT----GHKAPITGLAISFECDTL----YSSSND 252
S + IKLW++ E +T + GH+ ++ + F +TL S+S D
Sbjct: 483 DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS--CVRFSPNTLQPTIVSASWD 540
Query: 253 RSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNG 312
+++KVWN+ + TL GH ++++ + + +SGG D V +W + E +L
Sbjct: 541 KTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE 600
Query: 313 HSRGIDMTRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPV---AHGYDSSSSEPN---- 365
+ I ++ ++ + + +W + K + V A + +S P
Sbjct: 601 ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR 660
Query: 366 ---WITSVACLHNSDLVASGSYDGCVKLWKI 393
+ TS+ + + SG DG +++W I
Sbjct: 661 KVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 58/132 (43%), Gaps = 17/132 (12%)
Query: 268 TLFGHQSAITSLDILAKNR-VISSGGTDKSVRVWKIQEE------SQLVFNGHSRGIDMT 320
T+ H +T++ N +I S DKS+ +WK+ ++ +Q GHS ++
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDV 436
Query: 321 RRVNDQQFITCGE-DGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLV 379
+D QF G DG L LW + V T V H D + SVA ++ +
Sbjct: 437 VLSSDGQFALSGSWDGELRLWDLAAGVSTRRF-VGHTKD--------VLSVAFSLDNRQI 487
Query: 380 ASGSYDGCVKLW 391
S S D +KLW
Sbjct: 488 VSASRDRTIKLW 499
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 96/212 (45%), Gaps = 29/212 (13%)
Query: 230 HKAPITGLAISFECDTLYSSSNDRSIKVWNIE-DRAYVETLFGHQSAITSLDILAKNRVI 288
HK + + + + TL SSS+D I+VWN + D+ L GHQ + +L +R++
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF--LRGHQETVKDFRLLKNSRLL 1065
Query: 289 SSGGTDKSVRVWKI----QEESQLVFNGHSRGIDMTRRVNDQQFITCGEDGTLSLWSILK 344
S D +V+VW I +E+ + G D++ +F + D T +WS
Sbjct: 1066 S-WSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDAT--KFSSTSADKTAKIWSFDL 1122
Query: 345 KVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQD 404
+P H + +G S+ SV +S L+A+G +G +++W ++ L
Sbjct: 1123 LLPLHELRGHNGCVRCSA-----FSV----DSTLLATGDDNGEIRIWNVSNGELLHLCA- 1172
Query: 405 IPLS--------GVINSLVFTSDHKHLVAGIG 428
PLS G + L F+ D K L++ G
Sbjct: 1173 -PLSEEGAATHGGWVTDLCFSPDGKMLISAGG 1203
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 19/117 (16%)
Query: 288 ISSGGTDKSVRVWKIQE-ESQLVFNGHSRGIDMTRRVNDQQFI-TCGEDGTLSLWSILKK 345
I+S G DK+++V+K + E L H + D +FI TC D + +W+
Sbjct: 636 IASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWN---- 691
Query: 346 VPTHTIPVAHGYDSSSSEPNWITSVACLHNSD-----LVASGSYDGCVKLWKITPKR 397
+ T + H YD S + N C H ++ L+A+GS D +KLW + K
Sbjct: 692 --SMTGELVHTYDEHSEQVN------CCHFTNSSHHLLLATGSSDCFLKLWDLNQKE 740
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 66/153 (43%), Gaps = 17/153 (11%)
Query: 248 SSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWK-IQEES 306
S D++++V+ E + + H+ + +R I++ DK V++W + E
Sbjct: 638 SCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGEL 697
Query: 307 QLVFNGHSRGIDMTRRVNDQQFI---TCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSE 363
++ HS ++ N + T D L LW + +K +T+ G+ +S +
Sbjct: 698 VHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTM---FGHTNSVNH 754
Query: 364 PNWITSVACLHNSD--LVASGSYDGCVKLWKIT 394
C + D L+AS S DG +KLW T
Sbjct: 755 --------CRFSPDDKLLASCSADGTLKLWDAT 779
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/93 (20%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 211 NSNIKLWSS-SLEHLHTFTGHKAPITGLAISFECDTLY--SSSNDRSIKVWNIEDRAYVE 267
+ +K+W+S + E +HT+ H + + L + S+D +K+W++ +
Sbjct: 684 DKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRN 743
Query: 268 TLFGHQSAITSLDILAKNRVISSGGTDKSVRVW 300
T+FGH +++ +++++S D ++++W
Sbjct: 744 TMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 15/76 (19%), Positives = 35/76 (46%)
Query: 227 FTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNR 286
F H+ + IS + S+S D++ K+W+ + + L GH + +
Sbjct: 1087 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST 1146
Query: 287 VISSGGTDKSVRVWKI 302
++++G + +R+W +
Sbjct: 1147 LLATGDDNGEIRIWNV 1162
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 98/246 (39%), Gaps = 42/246 (17%)
Query: 207 SGDNNSNIKLWSSSLEHLHTF--------TGHKAPITGLAISFECDTLYSSSNDRSIKVW 258
SG + + +W E + + TGH ++ LA+S E SSS D+++++W
Sbjct: 44 SGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLW 103
Query: 259 NIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVF---NGHSR 315
++ + GHQS + S+ NR I S G ++ +++W I E + HS
Sbjct: 104 DLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSD 163
Query: 316 GIDMTRR------VNDQQ-----FITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEP 364
+ R N Q F + G DG L +W+ ++ Y + E
Sbjct: 164 WVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR---------YTFKAHES 214
Query: 365 NWITSVACLHNSDLVASGSYDGCVKLWKI----TPKRTLEFLQDIPLSGVINSLVFTSDH 420
N + ++ N +A+G D + +W I P+R + IN + F
Sbjct: 215 N-VNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD------AGSTINQIAFNPKL 267
Query: 421 KHLVAG 426
+ + G
Sbjct: 268 QWVAVG 273
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 79/175 (45%), Gaps = 11/175 (6%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCS------SPFVKTDRKSYPPIX 194
H++ + +A + D++ + SA + I W + K S S +V R Y PI
Sbjct: 117 HQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVR--YSPIM 174
Query: 195 XXXXXXX--XXXXXSGDNNSNIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSND 252
S + +K+W+++ + +TF H++ + L+IS + + D
Sbjct: 175 KSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKD 234
Query: 253 RSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQ 307
+ + +W+I + Y + F S I + K + ++ GTD+ V+++ + +S+
Sbjct: 235 KKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAV-GTDQGVKIFNLMTQSK 288
Score = 32.7 bits (73), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 18/116 (15%)
Query: 287 VISSGGTDKSVRVWKIQEESQ--------LVFNGHSRGI-DMTRRVNDQQFITCGEDGTL 337
V+ SG DK+V +WK+ EE Q GH+ + D+ + I+ D TL
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 338 SLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKI 393
LW L+ T+ V H SE + SVA ++ + S + +KLW I
Sbjct: 101 RLWD-LRTGTTYKRFVGH-----QSE---VYSVAFSPDNRQILSAGAEREIKLWNI 147
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 222 EHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLF-GHQSAITSLD 280
E + F H I +A+ + S S+D ++K+WN E+ +E F GH+ + +
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 281 ILAKN-RVISSGGTDKSVRVWKIQEESQ--LVFNGHSRG---IDMTRRVNDQQFITCGED 334
K+ +SG D++V+VW + + + + G RG +D + IT +D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 335 GTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNS-DLVASGSYDGCVKLW 391
T+ +W K T+ G+ S+ S A H + ++ SGS DG +K+W
Sbjct: 208 LTIKIWDYQTKSCVATL---EGHMSN-------VSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 207 SGDNNSNIKLWSS----SLEHLHTFTGHKAPITGLAISF-ECDTLYSSSNDRSIKVWNIE 261
SG ++ +KLW+ +LE TF GH+ + +A + + T S DR++KVW++
Sbjct: 114 SGSDDLTVKLWNWENNWALEQ--TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 262 DRAYVETLF-GHQSAITSLDI--LAKNRVISSGGTDKSVRVWKIQEESQLV-FNGHSRGI 317
TL G + + +D L + + D ++++W Q +S + GH +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Query: 318 DMTRRVNDQQFITCG-EDGTLSLWS 341
I G EDGTL +W+
Sbjct: 232 SFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 222 EHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLF-GHQSAITSLD 280
E + F H I +A+ + S S+D ++K+WN E+ +E F GH+ + +
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 281 ILAKN-RVISSGGTDKSVRVWKIQEESQ--LVFNGHSRG---IDMTRRVNDQQFITCGED 334
K+ +SG D++V+VW + + + + G RG +D + IT +D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 335 GTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNS-DLVASGSYDGCVKLW 391
T+ +W K T+ G+ S+ S A H + ++ SGS DG +K+W
Sbjct: 208 LTIKIWDYQTKSCVATL---EGHMSN-------VSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 66/145 (45%), Gaps = 12/145 (8%)
Query: 207 SGDNNSNIKLWSS----SLEHLHTFTGHKAPITGLAISF-ECDTLYSSSNDRSIKVWNIE 261
SG ++ +KLW+ +LE TF GH+ + +A + + T S DR++KVW++
Sbjct: 114 SGSDDLTVKLWNWENNWALEQ--TFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLG 171
Query: 262 DRAYVETLF-GHQSAITSLDI--LAKNRVISSGGTDKSVRVWKIQEESQLV-FNGHSRGI 317
TL G + + +D L + + D ++++W Q +S + GH +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNV 231
Query: 318 DMTRRVNDQQFITCG-EDGTLSLWS 341
I G EDGTL +W+
Sbjct: 232 SFAVFHPTLPIIISGSEDGTLKIWN 256
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 93/183 (50%), Gaps = 18/183 (9%)
Query: 212 SNIKLWSSSLEH-LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLF 270
+ + L+++S E L+T GH+ + L SF+ + S S D++ KVW ++ + V L
Sbjct: 84 NGVPLFATSGEDPLYTLIGHQGNVCSL--SFQDGVVISGSWDKTAKVW--KEGSLVYNLQ 139
Query: 271 GHQSAITSLDILA--KNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQF 328
H +++ +++ +N+ +++ DK++++W+ + + H+ + V+D F
Sbjct: 140 AHNASVWDAKVVSFSENKFLTAS-ADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHF 198
Query: 329 ITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCV 388
I+C DG ++K V HT V Y+ S ++ + L N D+V+ G D V
Sbjct: 199 ISCSNDG------LIKLVDXHTGDVLRTYEGHES---FVYCIKLLPNGDIVSCGE-DRTV 248
Query: 389 KLW 391
++W
Sbjct: 249 RIW 251
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 25/198 (12%)
Query: 207 SGDNNSNIKLWSSSLEHLHTFTGHKAPI-TGLAISFECDTLYSSSNDRSIKVWNIEDRAY 265
SG + K+W ++ H A + +SF + ++S D++IK+W ++
Sbjct: 119 SGSWDKTAKVWKEG-SLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLW--QNDKV 175
Query: 266 VETLFG-HQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRV 323
++T G H + L ++ IS D +++ L + GH + + +
Sbjct: 176 IKTFSGIHNDVVRHLAVVDDGHFISCS-NDGLIKLVDXHTGDVLRTYEGHESFVYCIKLL 234
Query: 324 NDQQFITCGEDGTLSLWS----ILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLV 379
+ ++CGED T+ +WS LK+V T+P I SV C N D++
Sbjct: 235 PNGDIVSCGEDRTVRIWSKENGSLKQVI--TLPAIS-----------IWSVDCXSNGDII 281
Query: 380 ASGSYDGCVKLWKITPKR 397
GS D V+++ R
Sbjct: 282 V-GSSDNLVRIFSQEKSR 298
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 254 SIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQE-ESQLVFNG 312
+I V+ I ++ L GH I+ L+ N+++ S D ++R+W SQ F G
Sbjct: 228 AIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYG 287
Query: 313 HSRGIDMTRRVNDQQFITCGEDGTLSLWSI 342
HS+ I V D + I+C DG++ LWS+
Sbjct: 288 HSQSIVSASWVGDDKVISCSMDGSVRLWSL 317
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 227 FTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNR 286
GH PI+ L + L S+S+D ++++W+ + +GH +I S + ++
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 287 VISSGGTDKSVRVWKIQEESQLVF 310
VIS D SVR+W +++ + L
Sbjct: 303 VISC-SMDGSVRLWSLKQNTLLAL 325
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/188 (20%), Positives = 76/188 (40%), Gaps = 41/188 (21%)
Query: 207 SGDNNSNIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYV 266
+G N ++LW+ + L+ H+API + + + + S + +WN
Sbjct: 125 TGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN------- 177
Query: 267 ETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQ 326
+ S ++ + +GG+ I E+ S G+D+ V+D
Sbjct: 178 ---------VISGTVMQHFELKETGGS-------SINAENH--SGDGSLGVDV-EWVDDD 218
Query: 327 QFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSD---LVASGS 383
+F+ G G + ++ I +K PT + HG ++ L +D L+ S S
Sbjct: 219 KFVIPGPKGAIFVYQITEKTPTGKLIGHHG------------PISVLEFNDTNKLLLSAS 266
Query: 384 YDGCVKLW 391
DG +++W
Sbjct: 267 DDGTLRIW 274
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 222 EHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLF-GHQSAITSLD 280
E + F H I +A+ + S S+D ++K+WN E+ +E F GH+ + +
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 281 ILAKN-RVISSGGTDKSVRVWKIQEESQ--LVFNGHSRG---IDMTRRVNDQQFITCGED 334
K+ +SG D++V+VW + + + + G RG +D + IT +D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 335 GTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNS-DLVASGSYDGCVKLW 391
T+ +W K T+ G+ S+ S A H + ++ SGS DG +K+W
Sbjct: 208 LTIKIWDYQTKSCVATL---EGHMSN-------VSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 68/156 (43%), Gaps = 8/156 (5%)
Query: 207 SGDNNSNIKLWS--SSLEHLHTFTGHKAPITGLAISFECDTLY--SSSNDRSIKVWNIED 262
SG + +K+WS S + TG + + + D Y ++S+D +IK+W+ +
Sbjct: 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT 217
Query: 263 RAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWK---IQEESQLVFNGHSRGIDM 319
++ V TL GH S ++ +I SG D ++++W + E L
Sbjct: 218 KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIA 277
Query: 320 TRRVNDQQFITCGEDGTLSLWSILKKVPTHTI-PVA 354
T + +I G D ++ S+ PT ++ PV
Sbjct: 278 THPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVG 313
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 81/178 (45%), Gaps = 18/178 (10%)
Query: 222 EHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLF-GHQSAITSLD 280
E + F H I +A+ + S S+D ++K+WN E+ +E F GH+ + +
Sbjct: 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147
Query: 281 ILAKN-RVISSGGTDKSVRVWKIQEESQ--LVFNGHSRG---IDMTRRVNDQQFITCGED 334
K+ +SG D++V+VW + + + + G RG +D + IT +D
Sbjct: 148 FNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD 207
Query: 335 GTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNS-DLVASGSYDGCVKLW 391
T+ +W K T+ G+ S+ S A H + ++ SGS DG +K+W
Sbjct: 208 LTIKIWDYQTKSCVATL---EGHMSN-------VSFAVFHPTLPIIISGSEDGTLKIW 255
Score = 36.2 bits (82), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 52/113 (46%), Gaps = 4/113 (3%)
Query: 246 LYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWK---I 302
+ ++S+D +IK+W+ + ++ V TL GH S ++ +I SG D ++++W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY 260
Query: 303 QEESQLVFNGHSRGIDMTRRVNDQQFITCGEDGTLSLWSILKKVPTHTI-PVA 354
+ E L T + +I G D ++ S+ PT ++ PV
Sbjct: 261 KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVG 313
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 10/209 (4%)
Query: 139 KPHRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXX 198
+ H A I + +DS+ + SA +DG +I W T +KV + P R S+
Sbjct: 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL----RSSWVMTCAYAP 107
Query: 199 XXXXXXXXSGDNNS---NIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSI 255
DN N+K ++ GH ++ + + + +SS D +
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 256 KVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQE-ESQLVFNGHS 314
+W+IE T GH + SL + R+ SG D S ++W ++E + F GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 315 RGID-MTRRVNDQQFITCGEDGTLSLWSI 342
I+ + N F T +D T L+ +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDL 255
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 230 HKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVIS 289
H + L+++ + S + D S K+W++ + +T GH+S I ++ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 290 SGGTDKSVRVWKIQEESQLVFNGHSR---GIDMTRRVNDQQFITCG-EDGTLSLWSILKK 345
+G D + R++ ++ + +L+ H GI + + G +D ++W LK
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK- 301
Query: 346 VPTHTIPVAHGYDSSSSEPNWITSVACLHNSD---LVASGSYDGCVKLWK 392
V G+D+ V+CL +D VA+GS+D +K+W
Sbjct: 302 --ADRAGVLAGHDN---------RVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 14/173 (8%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH A I + + L S+S D + +W+ V + S + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 286 RVISSGGTDKSVRVWKIQEESQLV-----FNGHSRGIDMTRRVNDQQFITCGEDGTLSLW 340
++ GG D ++ ++ V GH+ + R ++D Q +T D T +LW
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 341 SILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKI 393
I + T H D + S++ ++ L SG+ D KLW +
Sbjct: 170 DI-ETGQQTTTFTGHTGD--------VMSLSLAPDTRLFVSGACDASAKLWDV 213
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 10/209 (4%)
Query: 139 KPHRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXX 198
+ H A I + +DS+ + SA +DG +I W T +KV + P R S+
Sbjct: 52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPL----RSSWVMTCAYAP 107
Query: 199 XXXXXXXXSGDNNS---NIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSI 255
DN N+K ++ GH ++ + + + +SS D +
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 256 KVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQE-ESQLVFNGHS 314
+W+IE T GH + SL + R+ SG D S ++W ++E + F GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 315 RGID-MTRRVNDQQFITCGEDGTLSLWSI 342
I+ + N F T +D T L+ +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDL 255
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 230 HKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVIS 289
H + L+++ + S + D S K+W++ + +T GH+S I ++ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 290 SGGTDKSVRVWKIQEESQLVFNGHSR---GIDMTRRVNDQQFITCG-EDGTLSLWSILKK 345
+G D + R++ ++ + +L+ H GI + + G +D ++W LK
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK- 301
Query: 346 VPTHTIPVAHGYDSSSSEPNWITSVACLHNSD---LVASGSYDGCVKLWK 392
V G+D+ V+CL +D VA+GS+D +K+W
Sbjct: 302 --ADRAGVLAGHDN---------RVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 14/173 (8%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH A I + + L S+S D + +W+ V + S + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 286 RVISSGGTDKSVRVWKIQEESQLV-----FNGHSRGIDMTRRVNDQQFITCGEDGTLSLW 340
++ GG D ++ ++ V GH+ + R ++D Q +T D T +LW
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 341 SILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKI 393
I + T H D + S++ ++ L SG+ D KLW +
Sbjct: 170 DI-ETGQQTTTFTGHTGD--------VMSLSLAPDTRLFVSGACDASAKLWDV 213
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 10/209 (4%)
Query: 139 KPHRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXX 198
+ H A I + +DS+ + SA +DG +I W T +KV + P R S+
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL----RSSWVMTCAYAP 107
Query: 199 XXXXXXXXSGDNNS---NIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSI 255
DN N+K ++ GH ++ + + + +SS D +
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 256 KVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQE-ESQLVFNGHS 314
+W+IE T GH + SL + R+ SG D S ++W ++E + F GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 315 RGID-MTRRVNDQQFITCGEDGTLSLWSI 342
I+ + N F T +D T L+ +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDL 255
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 230 HKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVIS 289
H + L+++ + S + D S K+W++ + +T GH+S I ++ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 290 SGGTDKSVRVWKIQEESQLVFNGHSR---GIDMTRRVNDQQFITCG-EDGTLSLWSILKK 345
+G D + R++ ++ + +L+ H GI + + G +D ++W LK
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK- 301
Query: 346 VPTHTIPVAHGYDSSSSEPNWITSVACLHNSD---LVASGSYDGCVKLWK 392
V G+D+ V+CL +D VA+GS+D +K+W
Sbjct: 302 --ADRAGVLAGHDN---------RVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 14/173 (8%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH A I + + L S+S D + +W+ V + S + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 286 RVISSGGTDKSVRVWKIQEESQLV-----FNGHSRGIDMTRRVNDQQFITCGEDGTLSLW 340
++ GG D ++ ++ V GH+ + R ++D Q +T D T +LW
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 341 SILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKI 393
I + T H D + S++ ++ L SG+ D KLW +
Sbjct: 170 DI-ETGQQTTTFTGHTGD--------VMSLSLAPDTRLFVSGACDASAKLWDV 213
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 10/209 (4%)
Query: 139 KPHRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXX 198
+ H A I + +DS+ + SA +DG +I W T +KV + P R S+
Sbjct: 52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL----RSSWVMTCAYAP 107
Query: 199 XXXXXXXXSGDNNS---NIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSI 255
DN N+K ++ GH ++ + + + +SS D +
Sbjct: 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 166
Query: 256 KVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQE-ESQLVFNGHS 314
+W+IE T GH + SL + R+ SG D S ++W ++E + F GH
Sbjct: 167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 226
Query: 315 RGID-MTRRVNDQQFITCGEDGTLSLWSI 342
I+ + N F T +D T L+ +
Sbjct: 227 SDINAICFFPNGNAFATGSDDATCRLFDL 255
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 230 HKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVIS 289
H + L+++ + S + D S K+W++ + +T GH+S I ++ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 290 SGGTDKSVRVWKIQEESQLVFNGHSR---GIDMTRRVNDQQFITCG-EDGTLSLWSILKK 345
+G D + R++ ++ + +L+ H GI + + G +D ++W LK
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK- 301
Query: 346 VPTHTIPVAHGYDSSSSEPNWITSVACLHNSD---LVASGSYDGCVKLWK 392
V G+D+ V+CL +D VA+GS+D +K+W
Sbjct: 302 --ADRAGVLAGHDN---------RVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 14/173 (8%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH A I + + L S+S D + +W+ V + S + +
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 286 RVISSGGTDKSVRVWKIQEESQLV-----FNGHSRGIDMTRRVNDQQFITCGEDGTLSLW 340
++ GG D ++ ++ V GH+ + R ++D Q +T D T +LW
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169
Query: 341 SILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKI 393
I + T H D + S++ ++ L SG+ D KLW +
Sbjct: 170 DI-ETGQQTTTFTGHTGD--------VMSLSLAPDTRLFVSGACDASAKLWDV 213
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 229 GHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVI 288
H + IT L + L SSS D +K+W+++D + TL GH++ +T + I+ + R +
Sbjct: 134 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 193
Query: 289 SSGGTDKSVRVWK 301
S D ++R+W+
Sbjct: 194 LSASLDGTIRLWE 206
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKW 169
HRA++T IA+ ++V SA DG I W
Sbjct: 177 HRATVTDIAIIDRGRNVLSASLDGTIRLW 205
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 229 GHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVI 288
H + IT L + L SSS D +K+W+++D + TL GH++ +T + I+ + R +
Sbjct: 137 AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNV 196
Query: 289 SSGGTDKSVRVWK 301
S D ++R+W+
Sbjct: 197 LSASLDGTIRLWE 209
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 141 HRASITCIAVTSDSKHVYSACKDGIIIKW 169
HRA++T IA+ ++V SA DG I W
Sbjct: 180 HRATVTDIAIIDRGRNVLSASLDGTIRLW 208
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 86/209 (41%), Gaps = 10/209 (4%)
Query: 139 KPHRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXX 198
+ H A I + +DS+ + SA +DG +I W T +KV + P R S+
Sbjct: 63 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPL----RSSWVMTCAYAP 118
Query: 199 XXXXXXXXSGDNNS---NIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSI 255
DN N+K ++ GH ++ + + + +SS D +
Sbjct: 119 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRF-LDDNQIVTSSGDTTC 177
Query: 256 KVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQE-ESQLVFNGHS 314
+W+IE T GH + SL + R+ SG D S ++W ++E + F GH
Sbjct: 178 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHE 237
Query: 315 RGID-MTRRVNDQQFITCGEDGTLSLWSI 342
I+ + N F T +D T L+ +
Sbjct: 238 SDINAICFFPNGNAFATGSDDATCRLFDL 266
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 230 HKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVIS 289
H + L+++ + S + D S K+W++ + +T GH+S I ++ +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 290 SGGTDKSVRVWKIQEESQLVFNGHSR---GIDMTRRVNDQQFITCG-EDGTLSLWSILKK 345
+G D + R++ ++ + +L+ H GI + + G +D ++W LK
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK- 312
Query: 346 VPTHTIPVAHGYDSSSSEPNWITSVACLHNSD---LVASGSYDGCVKLWK 392
V G+D+ V+CL +D VA+GS+D +K+W
Sbjct: 313 --ADRAGVLAGHDN---------RVSCLGVTDDGMAVATGSWDSFLKIWN 351
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 14/173 (8%)
Query: 226 TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKN 285
T GH A I + + L S+S D + +W+ V + S + +
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 286 RVISSGGTDKSVRVWKIQEESQLV-----FNGHSRGIDMTRRVNDQQFITCGEDGTLSLW 340
++ GG D ++ ++ V GH+ + R ++D Q +T D T +LW
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 180
Query: 341 SILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKI 393
I + T H D + S++ ++ L SG+ D KLW +
Sbjct: 181 DI-ETGQQTTTFTGHTGD--------VMSLSLAPDTRLFVSGACDASAKLWDV 224
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 56/113 (49%), Gaps = 13/113 (11%)
Query: 249 SSNDRSIKVWNIEDRAYVETL-------FGHQSAITSLDILAKNRVISSGGTDKSVRVWK 301
+S+ ++++W I ++ E+L + H + +L + + SGG D SV+VW
Sbjct: 111 ASDSGAVELWEILEK---ESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWD 167
Query: 302 IQEESQL-VFNGHSRGIDMTRRV--NDQQFITCGEDGTLSLWSILKKVPTHTI 351
+ +++ L +N HS ++ D F++CGEDG + LW K P I
Sbjct: 168 LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI 220
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 75/180 (41%), Gaps = 11/180 (6%)
Query: 135 KFNGKPHRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTD---RKSYP 191
+ N H + + +++ ++HVY+ K G + W + SP + D R +Y
Sbjct: 44 QINTLNHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISHPGN--KSPVSQLDCLNRDNY- 99
Query: 192 PIXXXXXXXXXXXXXSGDNNSNIKLW--SSSLEHLHTFTGHKAPIT-GLAISFECDTLYS 248
I G S + +W ++ + AP LAIS + +S
Sbjct: 100 -IRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFS 158
Query: 249 SSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL 308
+D +I VW++ ++ V GH + +DI + +GG D +VR W ++E QL
Sbjct: 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL 218
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 227 FTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNR 286
TGH+ P+T + + E D L+S S D S VW + + TL GH I S+D+ +
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTK 87
Query: 287 VISSGGTDKSVRVWKI 302
+G D S+++W +
Sbjct: 88 YCVTGSADYSIKLWDV 103
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 211 NSNIKLWSS-SLEHLHTFTGHKAPITGLAISFECDTLY--SSSNDRSIKVWNIEDRAYVE 267
+S+ +W S + E L T GH I +I +C T Y + S D SIK+W++ + V
Sbjct: 53 DSSASVWYSLNGERLGTLDGHTGTI--WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVA 110
Query: 268 T 268
T
Sbjct: 111 T 111
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 222 EHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDI 281
E L H+ + A S + + + S D+ +K+W+ V T H +
Sbjct: 648 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF 707
Query: 282 LAKNR--VISSGGTDKSVRVWKI-QEESQLVFNGHSRGIDMTRRVNDQQFI-TCGEDGTL 337
K+ ++++G D +++W + Q+E + GH+ ++ R D + + +C DGTL
Sbjct: 708 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767
Query: 338 SLWSILKKVPTHTIPVAHGYDSSSSEP 364
LW + +I V + SS P
Sbjct: 768 RLWDVRSANERKSINVKRFFLSSEDPP 794
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 73/169 (43%), Gaps = 9/169 (5%)
Query: 137 NGKPHRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXX 196
+G H+ ++ I T+D K + S+ +D +I W +T V F++ +++
Sbjct: 998 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV----FLQAHQETVKDFRLL 1053
Query: 197 XXXXXXXXXXSGDNNSNIKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSI 255
G +K+W+ + FT H+ + AIS + S+S D++
Sbjct: 1054 QDSRLLSWSFDG----TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA 1109
Query: 256 KVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQE 304
K+W+ + + + L GH + ++++G + +R+W + +
Sbjct: 1110 KIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1158
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 78/191 (40%), Gaps = 7/191 (3%)
Query: 207 SGDNNSNIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYV 266
S +S I++W+ H+ + + + L S S D ++KVWN+
Sbjct: 1020 SSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRL-LQDSRLLSWSFDGTVKVWNVITGRIE 1078
Query: 267 ETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVND 325
HQ + S I + SS DK+ ++W S L GH+ + + D
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138
Query: 326 QQFITCGED-GTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSD-LVASGS 383
+ G+D G + +W++ H+ + +++ W+T V +S LV++G
Sbjct: 1139 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG 1198
Query: 384 YDGCVKLWKIT 394
Y +K W +
Sbjct: 1199 Y---LKWWNVA 1206
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 50/113 (44%)
Query: 231 KAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISS 290
+A ++ +S + + D +IK+ + + + GH+ A+ + A + + S
Sbjct: 961 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1020
Query: 291 GGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQFITCGEDGTLSLWSIL 343
D ++VW Q + H + R + D + ++ DGT+ +W+++
Sbjct: 1021 SSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1073
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/127 (20%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 211 NSNIKLWSSSLEHL-HTFTGHKAPITGLAISFECD--TLYSSSNDRSIKVWNIEDRAYVE 267
+ +K+W S+ L HT+ H + + + + L + SND +K+W++ +
Sbjct: 678 DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 737
Query: 268 TLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQ 327
T+FGH +++ + +++S D ++R+W + R + + +N ++
Sbjct: 738 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDV------------RSANERKSINVKR 785
Query: 328 FITCGED 334
F ED
Sbjct: 786 FFLSSED 792
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 19/132 (14%)
Query: 272 HQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLV-FNGHSRGIDMTRRVNDQQFI- 329
H A+ + I+S G DK+++V+K + +L+ H + +D +I
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 330 TCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLH-----NSDLVASGSY 384
TC D + +W + T + H YD S + N C H N L+A+GS
Sbjct: 674 TCSADKKVKIWD------SATGKLVHTYDEHSEQVN------CCHFTNKSNHLLLATGSN 721
Query: 385 DGCVKLWKITPK 396
D +KLW + K
Sbjct: 722 DFFLKLWDLNQK 733
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 248 SSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQ 307
S D++++V+ E + + H+ + + + I++ DK V++W +
Sbjct: 632 SCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD-SATGK 690
Query: 308 LV--FNGHSRGID---MTRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSS 362
LV ++ HS ++ T + N T D L LW + +K +T+ G+ +S +
Sbjct: 691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM---FGHTNSVN 747
Query: 363 EPNWITSVACLHNSDLVASGSYDGCVKLWKI 393
+ + +L+AS S DG ++LW +
Sbjct: 748 HCRFSP------DDELLASCSADGTLRLWDV 772
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 24/212 (11%)
Query: 218 SSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAIT 277
S L +HT GH + I S + + +++WNI+ R V GH S +
Sbjct: 829 SGLLAEIHT--GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 886
Query: 278 SLDILAKNRVISSGGTDKSVRVW---KIQEESQLVFNGHSRGIDMTRRVNDQQFITCGED 334
+ + D+++RVW K+ + S +V + ID+ + N+ +
Sbjct: 887 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK---QEIDVVFQENETMVLAVDNI 943
Query: 335 GTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLH-NSDLVASGSYDGCVKLWKI 393
L L +A P S CL + + VA G DG +K+ ++
Sbjct: 944 RGLQL-------------IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL 990
Query: 394 TPKRTLEFLQDIPLSGVINSLVFTSDHKHLVA 425
R F + + + FT+D K L++
Sbjct: 991 PNNRV--FSSGVGHKKAVRHIQFTADGKTLIS 1020
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 4/147 (2%)
Query: 222 EHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDI 281
E L H+ + A S + + + S D+ +K+W+ V T H +
Sbjct: 655 EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHF 714
Query: 282 LAKNR--VISSGGTDKSVRVWKI-QEESQLVFNGHSRGIDMTRRVNDQQFI-TCGEDGTL 337
K+ ++++G D +++W + Q+E + GH+ ++ R D + + +C DGTL
Sbjct: 715 TNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 774
Query: 338 SLWSILKKVPTHTIPVAHGYDSSSSEP 364
LW + +I V + SS P
Sbjct: 775 RLWDVRSANERKSINVKRFFLSSEDPP 801
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 73/169 (43%), Gaps = 9/169 (5%)
Query: 137 NGKPHRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXX 196
+G H+ ++ I T+D K + S+ +D +I W +T V F++ +++
Sbjct: 1005 SGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYV----FLQAHQETVKDFRLL 1060
Query: 197 XXXXXXXXXXSGDNNSNIKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSI 255
G +K+W+ + FT H+ + AIS + S+S D++
Sbjct: 1061 QDSRLLSWSFDG----TVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTA 1116
Query: 256 KVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQE 304
K+W+ + + + L GH + ++++G + +R+W + +
Sbjct: 1117 KIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSD 1165
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 78/191 (40%), Gaps = 7/191 (3%)
Query: 207 SGDNNSNIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYV 266
S +S I++W+ H+ + + + L S S D ++KVWN+
Sbjct: 1027 SSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRL-LQDSRLLSWSFDGTVKVWNVITGRIE 1085
Query: 267 ETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQL-VFNGHSRGIDMTRRVND 325
HQ + S I + SS DK+ ++W S L GH+ + + D
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1145
Query: 326 QQFITCGED-GTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSD-LVASGS 383
+ G+D G + +W++ H+ + +++ W+T V +S LV++G
Sbjct: 1146 GILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAGG 1205
Query: 384 YDGCVKLWKIT 394
Y +K W +
Sbjct: 1206 Y---LKWWNVA 1213
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/113 (18%), Positives = 50/113 (44%)
Query: 231 KAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISS 290
+A ++ +S + + D +IK+ + + + GH+ A+ + A + + S
Sbjct: 968 EAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLIS 1027
Query: 291 GGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQFITCGEDGTLSLWSIL 343
D ++VW Q + H + R + D + ++ DGT+ +W+++
Sbjct: 1028 SSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVI 1080
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/100 (21%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
Query: 211 NSNIKLWSSSLEHL-HTFTGHKAPITGLAISFECD--TLYSSSNDRSIKVWNIEDRAYVE 267
+ +K+W S+ L HT+ H + + + + L + SND +K+W++ +
Sbjct: 685 DKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRN 744
Query: 268 TLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQ 307
T+FGH +++ + +++S D ++R+W ++ ++
Sbjct: 745 TMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE 784
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 57/133 (42%), Gaps = 19/133 (14%)
Query: 272 HQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLV-FNGHSRGIDMTRRVNDQQFI- 329
H A+ + I+S G DK+++V+K + +L+ H + +D +I
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 330 TCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLH-----NSDLVASGSY 384
TC D + +W + T + H YD S + N C H N L+A+GS
Sbjct: 681 TCSADKKVKIWD------SATGKLVHTYDEHSEQVN------CCHFTNKSNHLLLATGSN 728
Query: 385 DGCVKLWKITPKR 397
D +KLW + K
Sbjct: 729 DFFLKLWDLNQKE 741
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 68/151 (45%), Gaps = 15/151 (9%)
Query: 248 SSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQ 307
S D++++V+ E + + H+ + + + I++ DK V++W +
Sbjct: 639 SCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD-SATGK 697
Query: 308 LV--FNGHSRGID---MTRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSS 362
LV ++ HS ++ T + N T D L LW + +K +T+ G+ +S +
Sbjct: 698 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTM---FGHTNSVN 754
Query: 363 EPNWITSVACLHNSDLVASGSYDGCVKLWKI 393
+ + +L+AS S DG ++LW +
Sbjct: 755 HCRFSP------DDELLASCSADGTLRLWDV 779
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 81/212 (38%), Gaps = 24/212 (11%)
Query: 218 SSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAIT 277
S L +HT GH + I S + + +++WNI+ R V GH S +
Sbjct: 836 SGLLAEIHT--GHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVH 893
Query: 278 SLDILAKNRVISSGGTDKSVRVW---KIQEESQLVFNGHSRGIDMTRRVNDQQFITCGED 334
+ + D+++RVW K+ + S +V + ID+ + N+ +
Sbjct: 894 GVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK---QEIDVVFQENETMVLAVDNI 950
Query: 335 GTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLH-NSDLVASGSYDGCVKLWKI 393
L L +A P S CL + + VA G DG +K+ ++
Sbjct: 951 RGLQL-------------IAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIEL 997
Query: 394 TPKRTLEFLQDIPLSGVINSLVFTSDHKHLVA 425
R F + + + FT+D K L++
Sbjct: 998 PNNRV--FSSGVGHKKAVRHIQFTADGKTLIS 1027
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 24/313 (7%)
Query: 131 VVCTKFNGKPHRASITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCS----SPFVKTD 186
V C G H + + T + + SA +DG +I W T K + P+V
Sbjct: 57 VCCRTLQG--HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVM-- 112
Query: 187 RKSYPPIXXXXXXXXXXXXXSGDNNSNIKLWSSSLEHLHTFTGHKAPITGLAISFECDT- 245
++ P S N S+ ++ TGHK + + +T
Sbjct: 113 ECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETR 172
Query: 246 LYSSSNDRSIKVWNIEDRAYV-----ETLFGHQSAITSLDILAKN-RVISSGGTDKSVRV 299
L + S D++ +W++ + E GH + + SL I + N + SG D +VR+
Sbjct: 173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRL 232
Query: 300 WKIQEESQLV--FNGHSRGIDMTRRVND-QQFITCGEDGTLSLWSILKKVPTHTIPVAHG 356
W ++ S+ V ++GH I+ + D Q+F T +DGT L+ + H + V +
Sbjct: 233 WDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNR 289
Query: 357 Y-DSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQDIPLS--GVINS 413
D + +E +TSVA + L+ +G +G +W + L + S G I+
Sbjct: 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC 349
Query: 414 LVFTSDHKHLVAG 426
L +SD L G
Sbjct: 350 LGLSSDGSALCTG 362
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 46/188 (24%), Positives = 70/188 (37%), Gaps = 31/188 (16%)
Query: 247 YSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWK-IQEE 305
YS + R+ +N D TL GH + SLD + I S D + VW + +
Sbjct: 40 YSKAQGRTAVSFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQ 99
Query: 306 SQLVFNGHSRGIDMTRRVNDQQFITCGE-DGTLSLWSILKK------VPTHTIPVAH-GY 357
H + + Q + CG D S++++ + +P + H GY
Sbjct: 100 KTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY 159
Query: 358 DSSSSEPNWITSVACLHNSDL---VASGSYDGCVKLWKITP-KRTLEFLQDIP------- 406
SS C + D + +GS D LW +T +R F + P
Sbjct: 160 ASS-----------CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADV 208
Query: 407 LSGVINSL 414
LS INSL
Sbjct: 209 LSLSINSL 216
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 229 GHKAPITGLAISFECDTLYSSSNDRSIKVW--NIEDRAYVETLFGHQSAITSLDILAKNR 286
GH+ + +A S + L S+S D + +W N +D V TL GH++ + S+
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 287 VISSGGTDKSVRVWKIQEESQL----VFNGHSRGI 317
++++ DKSV VW++ EE + V N H++ +
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 71/153 (46%), Gaps = 13/153 (8%)
Query: 221 LEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNI-EDRAY--VETLFGHQSAIT 277
E + T GH+ + +A + + L + S D+S+ VW + E+ Y V L H +
Sbjct: 95 FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVK 154
Query: 278 SLDILAKNRVISSGGTDKSVRVWKIQEESQLV---FNGHSRGI-DMTRRVNDQQFITCGE 333
+ +++S D +V++++ +E+ + GH + + + Q+ +C +
Sbjct: 155 HVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD 214
Query: 334 DGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNW 366
D T+ +W + +P + VA S S+P+W
Sbjct: 215 DRTVRIWR--QYLPGNEQGVA----CSGSDPSW 241
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 60/154 (38%), Gaps = 13/154 (8%)
Query: 246 LYSSSNDRSIKVWNIEDRAYVETLF---GHQSAITSLDILAKNRVISSGGTDKSVRVWKI 302
L S DR I++W E +++ GHQ + + ++S D + +WK
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKK 90
Query: 303 QE---ESQLVFNGHSRGIDMTRRVNDQQFI-TCGEDGTLSLWSILKKVPTHTIPVAHGYD 358
+ E GH + + TC D ++ +W + ++ + V + +
Sbjct: 91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHT 150
Query: 359 SSSSEPNWITSVACLHNSDLVASGSYDGCVKLWK 392
W S +L+AS SYD VKL++
Sbjct: 151 QDVKHVVWHPS------QELLASASYDDTVKLYR 178
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 24/145 (16%)
Query: 287 VISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQFITCGE-------DGTLSL 339
+++S G D+ +R+W + +S + + S G R V + CG D T +
Sbjct: 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEG--HQRTVRKVAWSPCGNYLASASFDATTCI 87
Query: 340 WSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTL 399
W + + G++ N + SVA + +L+A+ S D V +W++ +
Sbjct: 88 WK-KNQDDFECVTTLEGHE------NEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEY 140
Query: 400 EFLQDIPLSGVINSLVFTSDHKHLV 424
E + V+NS T D KH+V
Sbjct: 141 ECVS------VLNS--HTQDVKHVV 157
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 246 LYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVW 300
L++ ND +I VW++ + V LFGH++ +++L + SG D ++RVW
Sbjct: 299 LFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 26/196 (13%)
Query: 207 SGDNNSNIKLWS-SSLEHLHTFTGHKAPIT--GLAISFECDTLYSSSNDRSIKVWNIEDR 263
SGD LW S + L +F GH A + LA S +T S D+ VW++
Sbjct: 173 SGDGT--CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSG 230
Query: 264 AYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQ--------LVFNGHSR 315
V+ H+S + S+ +SG D + R++ ++ + + ++F S
Sbjct: 231 QCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSV 290
Query: 316 GIDMTRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHN 375
++ R+ + D T+++W +LK + + G++ N ++++ +
Sbjct: 291 DFSLSGRLLFAGY----NDYTINVWDVLKG---SRVSILFGHE------NRVSTLRVSPD 337
Query: 376 SDLVASGSYDGCVKLW 391
SGS+D +++W
Sbjct: 338 GTAFCSGSWDHTLRVW 353
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/215 (19%), Positives = 79/215 (36%), Gaps = 17/215 (7%)
Query: 139 KPHRASITCIAVTSDSKHVYSACKDGIIIKW--LLETRSKVCSSPFVKTDRKSYPPIXXX 196
K H + C+ D + + S+ +DG +I W + + P +Y P
Sbjct: 61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCA 120
Query: 197 XXXXXXXXXXS-----GDNNSNIKLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSN 251
S D N N+ S+ +HT T + + ++S
Sbjct: 121 IACGGLDNKCSVYPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDMQ-----ILTASG 174
Query: 252 DRSIKVWNIEDRAYVETLFGHQSAITSLDILAK--NRVISSGGTDKSVRVWKIQE-ESQL 308
D + +W++E +++ GH + + LD+ SGG DK VW ++ +
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 309 VFNGHSRGIDMTRRV-NDQQFITCGEDGTLSLWSI 342
F H ++ R + F + +D T L+ +
Sbjct: 235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDL 269
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 83/185 (44%), Gaps = 15/185 (8%)
Query: 244 DTLYSSSNDRSIKVWNIED-RAYVE-TLFGHQSAITSLDILAKNRVISSGGTDKSVRVWK 301
+T+ + S D +KVW D R ++ +L GHQ + S+DI + +S D +R+W
Sbjct: 49 ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWD 108
Query: 302 IQEESQL--VFNGHSRGIDMTRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDS 359
++ Q+ + G + + Q T G ++++ + +++
Sbjct: 109 LENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL-------- 160
Query: 360 SSSEPNWITSVACLHNSDLVASGSYDGCVKLWKITPKRTLEFLQDIPLSGVINSLVFTSD 419
+ +I S+A + +ASG+ DG + ++ I + L L+ + I SL F+ D
Sbjct: 161 -DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP--IRSLTFSPD 217
Query: 420 HKHLV 424
+ LV
Sbjct: 218 SQLLV 222
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 31/56 (55%)
Query: 224 LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSL 279
LHT GH PI L S + L ++S+D IK+++++ TL GH S + ++
Sbjct: 199 LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNV 254
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/157 (24%), Positives = 66/157 (42%), Gaps = 7/157 (4%)
Query: 145 ITCIAVTSDSKHVYSACKDGIIIKWLLETRSKVCSSPFVKTDRKSYPPIXXXXXXXXXXX 204
I IA + D K++ S DGII + + + T PI
Sbjct: 167 ILSIAYSPDGKYLASGAIDGII------NIFDIATGKLLHTLEGHAMPIRSLTFSPDSQL 220
Query: 205 XXSGDNNSNIKLWSSSLEHLH-TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDR 263
+ ++ IK++ +L T +GH + + +A + SSS+D+S+KVW++ R
Sbjct: 221 LVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR 280
Query: 264 AYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVW 300
V T F HQ + + I S G D+ + ++
Sbjct: 281 TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY 317
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 39/193 (20%), Positives = 86/193 (44%), Gaps = 16/193 (8%)
Query: 207 SGDNNSNIKLWSSSLEHLH---TFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDR 263
+G + +K+W E L + GH+ + + IS SSS D I++W++E+
Sbjct: 53 TGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG 112
Query: 264 AYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRG--IDMTR 321
++++ +L ++ +++G V ++ + E + ++ +RG I
Sbjct: 113 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV-ESGKKEYSLDTRGKFILSIA 171
Query: 322 RVNDQQFITCGE-DGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVA 380
D +++ G DG ++++ I HT+ + P I S+ +S L+
Sbjct: 172 YSPDGKYLASGAIDGIINIFDIATGKLLHTL-------EGHAMP--IRSLTFSPDSQLLV 222
Query: 381 SGSYDGCVKLWKI 393
+ S DG +K++ +
Sbjct: 223 TASDDGYIKIYDV 235
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 57/119 (47%), Gaps = 4/119 (3%)
Query: 237 LAISFECDTLYSSSN--DRSIKVWNIEDRAYVETLFGHQSAITSLDILAKNRVISSGGTD 294
L+I++ D Y +S D I +++I + TL GH I SL ++++ + D
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDD 227
Query: 295 KSVRVWKIQEESQL-VFNGHSRGI-DMTRRVNDQQFITCGEDGTLSLWSILKKVPTHTI 351
++++ +Q + +GH+ + ++ +D F++ D ++ +W + + HT
Sbjct: 228 GYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 207 SGDNNSNIKLWSSSLEH-----LHTFTGHKAPITGLA-ISFECDTLYSS--SNDRSIKVW 258
SG N++ + +W S+ L TFT H+ + +A ++ + L + ++DR I++W
Sbjct: 258 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 317
Query: 259 NIEDRAYVETLFGHQSAITSLDILAKNRVISSGG-TDKSVRVWKIQEESQLV-FNGH-SR 315
N+ A + + H + L +IS G + +WK +++ GH SR
Sbjct: 318 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR 377
Query: 316 GIDMTRRVNDQQFITCGEDGTLSLWSILKKVPT 348
+ +T + + D TL LW + P
Sbjct: 378 VLSLTMSPDGATVASAAADETLRLWRCFELDPA 410
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 208 GDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRA-- 264
G +++ ++LW + L T H A + S ++ SS RS + + + R
Sbjct: 176 GTSSAEVQLWDVQQQKRLRNMTSHSARVG----SLSWNSYILSSGSRSGHIHHHDVRVAE 231
Query: 265 -YVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVW 300
+V TL GH + L R ++SGG D V VW
Sbjct: 232 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 11/153 (7%)
Query: 207 SGDNNSNIKLWSSSLEH-----LHTFTGHKAPITGLA-ISFECDTLYSS--SNDRSIKVW 258
SG N++ + +W S+ L TFT H+ + +A ++ + L + ++DR I++W
Sbjct: 247 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 306
Query: 259 NIEDRAYVETLFGHQSAITSLDILAKNRVISSGG-TDKSVRVWKIQEESQLV-FNGH-SR 315
N+ A + + H + L +IS G + +WK +++ GH SR
Sbjct: 307 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR 366
Query: 316 GIDMTRRVNDQQFITCGEDGTLSLWSILKKVPT 348
+ +T + + D TL LW + P
Sbjct: 367 VLSLTMSPDGATVASAAADETLRLWRCFELDPA 399
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 208 GDNNSNIKLWS-SSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRA-- 264
G +++ ++LW + L T H A + S ++ SS RS + + + R
Sbjct: 165 GTSSAEVQLWDVQQQKRLRNMTSHSARVG----SLSWNSYILSSGSRSGHIHHHDVRVAE 220
Query: 265 -YVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVW 300
+V TL GH + L R ++SGG D V VW
Sbjct: 221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 11/152 (7%)
Query: 207 SGDNNSNIKLWSSSLEH-----LHTFTGHKAPITGLA-ISFECDTLYSS--SNDRSIKVW 258
SG N++ + +W S+ L TFT H+ + +A ++ + L + ++DR I++W
Sbjct: 167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIW 226
Query: 259 NIEDRAYVETLFGHQSAITSLDILAKNRVISSGG-TDKSVRVWKIQEESQLV-FNGH-SR 315
N+ A + + H + L +IS G + +WK +++ GH SR
Sbjct: 227 NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSR 286
Query: 316 GIDMTRRVNDQQFITCGEDGTLSLWSILKKVP 347
+ +T + + D TL LW + P
Sbjct: 287 VLSLTMSPDGATVASAAADETLRLWRCFELDP 318
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 43/97 (44%), Gaps = 8/97 (8%)
Query: 208 GDNNSNIKLWSSSLE-HLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRA-- 264
G +++ ++LW + L T H A + S ++ SS RS + + + R
Sbjct: 85 GTSSAEVQLWDVQQQKRLRNMTSHSARVG----SLSWNSYILSSGSRSGHIHHHDVRVAE 140
Query: 265 -YVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVW 300
+V TL GH + L R ++SGG D V VW
Sbjct: 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 90/230 (39%), Gaps = 50/230 (21%)
Query: 207 SGDNNSNIKLWSSS--------LEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVW 258
+G +S + +W+ ++ L GH+ + G+A S + L + S D+S+ +W
Sbjct: 75 AGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIW 134
Query: 259 NI----EDRAYVETLFGHQSAITSLDILAKNRVISSGGTDKSVRVWKIQE---ESQLVFN 311
E+ + L H + + +++S D +VR+WK + E V N
Sbjct: 135 ETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLN 194
Query: 312 GH-----SRGIDMTRRVNDQQFITC--GEDGTLSLWSIL--------KKVPTHTIPVAHG 356
GH S D T V F C +D T+ +W + + V +P H
Sbjct: 195 GHEGTVWSSDFDKTEGV----FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250
Query: 357 YDSSSSEPNWITSVACLHNSDLVASGSYDGCVKL-------WKITPKRTL 399
+ +VA N L+AS DG + + WK+ KR L
Sbjct: 251 RQ--------VYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRAL 291
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 68/169 (40%), Gaps = 31/169 (18%)
Query: 246 LYSSSNDRSIKVWNIEDRAY--VETLFGHQSAITSLDILAKNRV--ISSGGTDKSVRVWK 301
L SSS D ++++W D + V L GH+ + S D V + SG D +VRVWK
Sbjct: 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Query: 302 IQEESQ----------LVFNGHSRGIDMTRRVNDQQFITCGEDGTLSL-------WSILK 344
+ + ++ + H R + + + G DG L++ W +
Sbjct: 228 YMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFA 287
Query: 345 KVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKI 393
K + HG E N + L+ ++A+G DG V W +
Sbjct: 288 KRA-----LCHGV----YEIN-VVKWLELNGKTILATGGDDGIVNFWSL 326
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 70/178 (39%), Gaps = 18/178 (10%)
Query: 228 TGHKAPITGLAISFECDTLYSSSNDRSIKVWNIE---DRAYVETLF----GHQSAITSLD 280
T HK I +A L + S D ++ +W E DR + L GH++ + +
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVA 114
Query: 281 ILAKNRVISSGGTDKSVRVWKIQE-----ESQLVFNGHSRGID-MTRRVNDQQFITCGED 334
+++ DKSV +W+ E E V HS+ + + ++ + D
Sbjct: 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 335 GTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWK 392
T+ +W + V +G++ + W + + SGS D V++WK
Sbjct: 175 DTVRIWKDYDD-DWECVAVLNGHEGTV----WSSDFDKTEGVFRLCSGSDDSTVRVWK 227
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 220 SLEHLHTFTGHKAPITGLAI-SFECDTLYSSSNDRSIKVWNIEDRAYVETLFG---HQSA 275
+++ + + GH I L + + L S S D ++++WNI+ V G H+
Sbjct: 140 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 199
Query: 276 ITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQFIT 330
+ S D I S G D S+++W+I S+ + N D ++ FI+
Sbjct: 200 VLSADYDLLGEKIMSCGMDHSLKLWRIN--SKRMMNAIKESYDYNPNKTNRPFIS 252
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 266 VETLFGHQSAITSLDILAKN-RVISSGGTDKSVRVWKIQEESQLVFNGHSRG-----IDM 319
++ GH +AI L ++ ++ S D ++R+W IQ ++ + G G +
Sbjct: 144 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 203
Query: 320 TRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWIT 368
+ ++ ++CG D +L LW I K + I ++ Y+ + + +I+
Sbjct: 204 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 252
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 20/142 (14%)
Query: 225 HTFTGHKAPITGLAIS-FECDTLYSSSNDRSIKVWNIED-RAYVETLFGHQSAITSLDIL 282
HT H A + L+ + + L + S D+++ +W++ + + + + H+ I +
Sbjct: 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 330
Query: 283 AKNR-VISSGGTDKSVRVW---KIQEES----------QLVF--NGHSRGIDMTRRVNDQ 326
N +++S GTD+ + VW KI EE +L+F GH+ I ++
Sbjct: 331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390
Query: 327 QFITC--GEDGTLSLWSILKKV 346
+I C ED + +W + + V
Sbjct: 391 PWIICSVSEDNIMQVWQMAENV 412
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 220 SLEHLHTFTGHKAPITGLAI-SFECDTLYSSSNDRSIKVWNIEDRAYVETLFG---HQSA 275
+++ + + GH I L + + L S S D ++++WNI+ V G H+
Sbjct: 104 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 163
Query: 276 ITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQFIT 330
+ S D I S G D S+++W+I S+ + N D ++ FI+
Sbjct: 164 VLSADYDLLGEKIMSCGMDHSLKLWRIN--SKRMMNAIKESYDYNPNKTNRPFIS 216
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 266 VETLFGHQSAITSLDILAKN-RVISSGGTDKSVRVWKIQEESQLVFNGHSRG-----IDM 319
++ GH +AI L ++ ++ S D ++R+W IQ ++ + G G +
Sbjct: 108 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 167
Query: 320 TRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWIT 368
+ ++ ++CG D +L LW I K + I ++ Y+ + + +I+
Sbjct: 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 216
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 20/142 (14%)
Query: 225 HTFTGHKAPITGLAIS-FECDTLYSSSNDRSIKVWNIED-RAYVETLFGHQSAITSLDIL 282
HT H A + L+ + + L + S D+++ +W++ + + + + H+ I +
Sbjct: 273 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 332
Query: 283 AKNR-VISSGGTDKSVRVW---KIQEES----------QLVF--NGHSRGIDMTRRVNDQ 326
N +++S GTD+ + VW KI EE +L+F GH+ I ++
Sbjct: 333 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 392
Query: 327 QFITC--GEDGTLSLWSILKKV 346
+I C ED + +W + + V
Sbjct: 393 PWIICSVSEDNIMQVWQMAENV 414
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 220 SLEHLHTFTGHKAPITGLAI-SFECDTLYSSSNDRSIKVWNIEDRAYVETLFG---HQSA 275
+++ + + GH I L + + L S S D ++++WNI+ V G H+
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 162
Query: 276 ITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQFIT 330
+ S D I S G D S+++W+I S+ + N D ++ FI+
Sbjct: 163 VLSADYDLLGEKIMSCGMDHSLKLWRIN--SKRMMNAIKESYDYNPNKTNRPFIS 215
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 266 VETLFGHQSAITSLDILAKN-RVISSGGTDKSVRVWKIQEESQLVFNGHSRG-----IDM 319
++ GH +AI L ++ ++ S D ++R+W IQ ++ + G G +
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 320 TRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWIT 368
+ ++ ++CG D +L LW I K + I ++ Y+ + + +I+
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 215
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 77/191 (40%), Gaps = 25/191 (13%)
Query: 249 SSNDRSIKVWNIEDRAYVETL-------FGHQSAITSLDILAKNRVISSGGTDKSVRVWK 301
+S+ ++++W +++ ETL + H ++++ +L+ SG D ++VW
Sbjct: 99 ASDSGAVELWELDEN---ETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWD 155
Query: 302 IQEESQLV-FNGHSRGIDMTRRV--NDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYD 358
+ ++ L + H+ + D F++C ED + LW P I
Sbjct: 156 LAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQI------- 208
Query: 359 SSSSEPNWITSVACLH--NSDLVASGSYDGCVKLWKITPKRTLEFLQDIPLSGVINSLVF 416
S P ++ + H S++ G +G V L + K T L S + LVF
Sbjct: 209 -GCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL--VDTKSTSCVLSSAVHSQCVTGLVF 265
Query: 417 TSDHKHLVAGI 427
+ +A +
Sbjct: 266 SPHSVPFLASL 276
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 220 SLEHLHTFTGHKAPITGLAI-SFECDTLYSSSNDRSIKVWNIEDRAYVETLFG---HQSA 275
+++ + + GH I L + + L S S D ++++WNI+ V G H+
Sbjct: 103 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 162
Query: 276 ITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQFIT 330
+ S D I S G D S+++W+I S+ + N D ++ FI+
Sbjct: 163 VLSADYDLLGEKIMSCGMDHSLKLWRIN--SKRMMNAIKESYDYNPNKTNRPFIS 215
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 266 VETLFGHQSAITSLDILAKN-RVISSGGTDKSVRVWKIQEESQLVFNGHSRG-----IDM 319
++ GH +AI L ++ ++ S D ++R+W IQ ++ + G G +
Sbjct: 107 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 166
Query: 320 TRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWIT 368
+ ++ ++CG D +L LW I K + I ++ Y+ + + +I+
Sbjct: 167 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 215
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 6/115 (5%)
Query: 220 SLEHLHTFTGHKAPITGLAI-SFECDTLYSSSNDRSIKVWNIEDRAYVETLFG---HQSA 275
+++ + + GH I L + + L S S D ++++WNI+ V G H+
Sbjct: 99 TMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE 158
Query: 276 ITSLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQQFIT 330
+ S D I S G D S+++W+I S+ + N D ++ FI+
Sbjct: 159 VLSADYDLLGEKIMSCGMDHSLKLWRIN--SKRMMNAIKESYDYNPNKTNRPFIS 211
Score = 36.6 bits (83), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 266 VETLFGHQSAITSLDILAKN-RVISSGGTDKSVRVWKIQEESQLVFNGHSRG-----IDM 319
++ GH +AI L ++ ++ S D ++R+W IQ ++ + G G +
Sbjct: 103 IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA 162
Query: 320 TRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWIT 368
+ ++ ++CG D +L LW I K + I ++ Y+ + + +I+
Sbjct: 163 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFIS 211
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 65/142 (45%), Gaps = 20/142 (14%)
Query: 225 HTFTGHKAPITGLAIS-FECDTLYSSSNDRSIKVWNIED-RAYVETLFGHQSAITSLDIL 282
HT H A + L+ + + L + S D+++ +W++ + + + + H+ I +
Sbjct: 275 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 334
Query: 283 AKNR-VISSGGTDKSVRVW---KIQEES----------QLVF--NGHSRGIDMTRRVNDQ 326
N +++S GTD+ + VW KI EE +L+F GH+ I ++
Sbjct: 335 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 394
Query: 327 QFITC--GEDGTLSLWSILKKV 346
+I C ED + +W + + V
Sbjct: 395 PWIICSVSEDNIMQVWQMAENV 416
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 12/157 (7%)
Query: 255 IKVWNIEDR----AYVETLFGHQSAITSLDILA-KNRVISSGGTDKSVRVWKIQEESQLV 309
+K+W+ + + + +L G + + +D + V+++GG D + +W +++ + V
Sbjct: 214 LKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPV 273
Query: 310 FNGHSRGIDM----TRRVNDQQFITCGEDGTLSLWSILKKVPTHTIPVAHGYDSSSSEPN 365
+ +M N + TC EDG+L W VP + G SS+ +
Sbjct: 274 SLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWDASTDVPEKSSLFHQGGRSSTFLSH 333
Query: 366 WITSVACLHNSDLVASGSYDGC---VKLWKITPKRTL 399
I++ A +H S + + S D +++ + P R+L
Sbjct: 334 SISNQANVHQSVISSWLSTDPAKDRIEITSLLPSRSL 370
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 20/142 (14%)
Query: 225 HTFTGHKAPITGLAIS-FECDTLYSSSNDRSIKVWNIED-RAYVETLFGHQSAITSLDIL 282
H H A + L+ + + L + S D+++ +W++ + + + T H+ I +
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 283 AKNR-VISSGGTDKSVRVW---KIQEES----------QLVF--NGHSRGIDMTRRVNDQ 326
N +++S GTD+ + VW KI EE +L+F GH+ I ++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 327 QFITC--GEDGTLSLWSILKKV 346
++ C ED + +W + + +
Sbjct: 389 PWVICSVSEDNIMQIWQMAENI 410
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 16/97 (16%)
Query: 224 LHTFTGHKAPITGLAISFECDT-LYSSSNDRSIKVWNIE-----------DRAYVETLFG 271
LHTF HK I + S +T L SS DR + VW++ + E LF
Sbjct: 312 LHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFI 371
Query: 272 HQSAITSLDILAKNR----VISSGGTDKSVRVWKIQE 304
H + + N VI S D +++W++ E
Sbjct: 372 HGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAE 408
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 65/142 (45%), Gaps = 20/142 (14%)
Query: 225 HTFTGHKAPITGLAIS-FECDTLYSSSNDRSIKVWNIED-RAYVETLFGHQSAITSLDIL 282
H+ H A + L+ + + L + S D+++ +W++ + + + + H+ I +
Sbjct: 267 HSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 326
Query: 283 AKNR-VISSGGTDKSVRVW---KIQEES----------QLVF--NGHSRGIDMTRRVNDQ 326
N +++S GTD+ + VW KI EE +L+F GH+ I ++
Sbjct: 327 PHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNE 386
Query: 327 QFITC--GEDGTLSLWSILKKV 346
++ C ED + +W + + +
Sbjct: 387 PWVICSVSEDNIMQVWQMAENI 408
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 8/135 (5%)
Query: 215 KLWSSSLEHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDR---AYVETLFG 271
KL +S+ + T H A IT +A S L ++ R + +++ + A+ +
Sbjct: 476 KLSGASVSEVKTIV-HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF 534
Query: 272 HQSAITSLDILAKNRVISSGGTDKSVRVWKIQEESQ---LVFNGHSRG-IDMTRRVNDQQ 327
H + + + N +++G D SV VW + + S ++ H+ ++ +N+
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT 594
Query: 328 FITCGEDGTLSLWSI 342
++ G+D + W++
Sbjct: 595 IVSAGQDSNIKFWNV 609
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 93/212 (43%), Gaps = 40/212 (18%)
Query: 229 GHKAPITGLAISFECDTLYSSSNDRSIKVWN----IEDRAYVETLFGHQSAITSLDILAK 284
GH IT L+ S + TL+S+ + I W+ I +R + + H + IT + +K
Sbjct: 322 GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV---HATMITGIKTTSK 378
Query: 285 NRVISSGGTDKSVRVWKIQEESQLVFNGHSRGIDMTRRVNDQ-----QFITCGEDGTLSL 339
+ + W + ++V G S G+D ++ V ++ + DG +++
Sbjct: 379 GDLFTVS--------W--DDHLKVVPAGGS-GVDSSKAVANKLSSQPLGLAVSADGDIAV 427
Query: 340 WSILKKVPTHT------IPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKI 393
+ K + ++ +P++ Y+SS VA ++ VA G D V ++K+
Sbjct: 428 AACYKHIAIYSHGKLTEVPIS--YNSS--------CVALSNDKQFVAVGGQDSKVHVYKL 477
Query: 394 TPKRTLEFLQDIPLSGVINSLVFTSDHKHLVA 425
+ E ++ I I S+ F+++ LVA
Sbjct: 478 SGASVSE-VKTIVHPAEITSVAFSNNGAFLVA 508
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 26/189 (13%)
Query: 266 VETLFGHQSAITSLDILAKN-RVISSGGTDKSVRVWKIQE--------ESQLVFNGHSR- 315
V + GH + + + N VI+SG D +V VW+I + E + GH++
Sbjct: 74 VPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 316 -GIDMTRRVNDQQFITCGEDGTLSLWSILKKVPTHTI-PVAHGYDSSSSEPNWITSVACL 373
GI ++ G D + +W + T+ P H P+ I SV
Sbjct: 134 VGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVH--------PDTIYSVDWS 185
Query: 374 HNSDLVASGSYDGCVKLWKITPKR-TLEFLQDIPLSGVIN-SLVFTSDHKHLVAGIG--T 429
+ L+ + D V++ I P++ T+ +D P G VF S+ K L G +
Sbjct: 186 RDGALICTSCRDKRVRV--IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS 243
Query: 430 EHRFGRWKT 438
E + W T
Sbjct: 244 ERQVALWDT 252
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 24/135 (17%)
Query: 222 EHLHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAYVETLFGHQSAITSLDI 281
+ T GH + + GLA + L S ND +++W+ T H +A+ ++
Sbjct: 208 HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAW 267
Query: 282 LA--KNRVISSGGT-DKSVRVWKI------------QEESQLVFNGHSRGIDMTRRVNDQ 326
N + + GGT DK + W + + L+++ HS+ I T
Sbjct: 268 CPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGF--- 324
Query: 327 QFITCGEDGTLSLWS 341
D LS+WS
Sbjct: 325 ------PDNNLSIWS 333
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 224 LHTFTGHKAPITGLAISFECDTLYSSSNDRSIKVWNIEDRAY-VETLFGHQSAITSLDIL 282
L T GH+A + L S+ L S S +I ++ + + TL GH S + L
Sbjct: 169 LRTMAGHQARVGCL--SWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226
Query: 283 AKNRVISSGGTDKSVRVW 300
+ ++SGG D V++W
Sbjct: 227 SDGLQLASGGNDNVVQIW 244
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 31/142 (21%), Positives = 62/142 (43%), Gaps = 20/142 (14%)
Query: 225 HTFTGHKAPITGLAIS-FECDTLYSSSNDRSIKVWNIED-RAYVETLFGHQSAITSLDIL 282
H H A + L+ + + L + S D+++ +W++ + + + T H+ I +
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 283 AKNR-VISSGGTDKSVRVW---KIQEES----------QLVF--NGHSRGIDMTRRVNDQ 326
N +++S GTD+ + VW KI EE +L+F GH+ I ++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 327 QFITC--GEDGTLSLWSILKKV 346
++ C ED +W + +
Sbjct: 389 PWVICSVSEDNIXQIWQXAENI 410
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 26/189 (13%)
Query: 266 VETLFGHQSAITSLDILAKN-RVISSGGTDKSVRVWKIQE--------ESQLVFNGHSR- 315
V + GH + + + N VI+SG D +V VW+I + E + GH++
Sbjct: 74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR 133
Query: 316 -GIDMTRRVNDQQFITCGEDGTLSLWSILKKVPTHTI-PVAHGYDSSSSEPNWITSVACL 373
GI ++ G D + +W + T+ P H P+ I SV
Sbjct: 134 VGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVH--------PDTIYSVDWS 185
Query: 374 HNSDLVASGSYDGCVKLWKITPKR-TLEFLQDIPLSGVIN-SLVFTSDHKHLVAGIG--T 429
+ L+ + D V++ I P++ T+ +D P G VF S+ K L G +
Sbjct: 186 RDGALICTSCRDKRVRV--IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMS 243
Query: 430 EHRFGRWKT 438
E + W T
Sbjct: 244 ERQVALWDT 252
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 207 SGDNNSNIKLWSSSLEHLHTFTGHKAPITGLAISFECD-TLYSSSNDRSIKVWNIE 261
+GDN N+ L + + L HK +T +A++ CD L ++S D+++K+W++
Sbjct: 227 TGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 282
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 207 SGDNNSNIKLWSSSLEHLHTFTGHKAPITGLAISFECD-TLYSSSNDRSIKVWNIE 261
+GDN N+ L + + L HK +T +A++ CD L ++S D+++K+W++
Sbjct: 226 TGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 207 SGDNNSNIKLWSSSLEHLHTFTGHKAPITGLAISFECD-TLYSSSNDRSIKVWNIE 261
+GDN N+ L + + L HK +T +A++ CD L ++S D+++K+W++
Sbjct: 226 TGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLR 281
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 223 HLHTF-TGHKAPITGLAISFECDTLYSSSNDRSIKVWNIE----DRAYVETLFGHQSAIT 277
H+ F +GH + + F + + S+D+ IKV+ ++ + ++ H S+I
Sbjct: 2 HMQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV 61
Query: 278 SLDILAK--NRVISSGGTDKSVRVWK 301
++D + R+I+S DK+V++W+
Sbjct: 62 AIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 240 SFECDTLYSSSNDRSIKVWNIEDRAYVETL--FGHQSAITSLDILAKNRVISSGGTDKSV 297
SF C TLY + I ++ + +L F H S + SL + S G D +
Sbjct: 266 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 325
Query: 298 RVWKIQEESQL-VFNGHSRGIDMTRRV 323
R W ++ + ++ N H I++ +
Sbjct: 326 RFWDVKTKERITTLNMHCDDIEIEEDI 352
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 3/87 (3%)
Query: 240 SFECDTLYSSSNDRSIKVWNIEDRAYVETL--FGHQSAITSLDILAKNRVISSGGTDKSV 297
SF C TLY + I ++ + +L F H S + SL + S G D +
Sbjct: 256 SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 315
Query: 298 RVWKIQEESQL-VFNGHSRGIDMTRRV 323
R W ++ + ++ N H I++ +
Sbjct: 316 RFWDVKTKERITTLNMHCDDIEIEEDI 342
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 45/190 (23%), Positives = 78/190 (41%), Gaps = 29/190 (15%)
Query: 228 TGHKAPITGLAISFECDTLYSSSNDRSIKVWNIED--RAYVETLFGHQSAITSLDIL--A 283
T H+ I + + L + S+DRS+K++++ + + + L GH+ + +
Sbjct: 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPM 69
Query: 284 KNRVISSGGTDKSVRVWKIQE---ESQLVFNGHSRGID-MTRRVNDQQFI-TCG-EDGTL 337
+++S D+ V +W+ + E GH ++ + +D I CG DG +
Sbjct: 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI 129
Query: 338 SL--------WSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDL-------VASG 382
SL W + K HTI G ++ S P + H S ASG
Sbjct: 130 SLLTYTGEGQWEVKKINNAHTI----GCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASG 185
Query: 383 SYDGCVKLWK 392
D +KLWK
Sbjct: 186 GCDNLIKLWK 195
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 16/83 (19%)
Query: 378 LVASGSYDGCVKLWKITPKRTLEFLQD--------------IPLSGVINSLVFTSDHKHL 423
++A+ S D VKLW + D +G +N L FTSD HL
Sbjct: 201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260
Query: 424 VAGIGTEHRFGRWKTIKGVKNTV 446
+ +GT++R W + G +NT+
Sbjct: 261 LT-VGTDNRMRLWNSSNG-ENTL 281
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 7/86 (8%)
Query: 223 HLHTF-TGHKAPITGLAISFECDTLYSSSNDRSIKVWNIE----DRAYVETLFGHQSAIT 277
H F +GH + + F + + S+D+ IKV+ ++ + ++ H S+I
Sbjct: 2 HXQPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV 61
Query: 278 SLDILAK--NRVISSGGTDKSVRVWK 301
++D + R+I+S DK+V++W+
Sbjct: 62 AIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 6/80 (7%)
Query: 228 TGHKAPITGLAISFECDTLYSSSNDRSIKVWNIE----DRAYVETLFGHQSAITSLDILA 283
+GH + + F + + S+D+ IKV+ ++ + ++ H S+I ++D +
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 284 K--NRVISSGGTDKSVRVWK 301
R+I+S DK+V++W+
Sbjct: 66 PEYGRIIASASYDKTVKLWE 85
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 13/130 (10%)
Query: 278 SLDILAKNRVISSGGTDKSVRVWKIQEESQLVFNGHSRG----IDMTRRVNDQQFITCGE 333
S L N +I+ G VR W++Q+ Q + +D+ + + T
Sbjct: 48 SPPTLPGNFLIA-GSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC 106
Query: 334 DGTLSLWSILKKVPTHTIPVAHGYDSSSSEPNWITSVACLHNSDLVASGSYDGCVKLWKI 393
D T +W + I +A +D+ +WI + N V +GS+D +K W
Sbjct: 107 DKTAKMWDLSSN---QAIQIAQ-HDAPVKTIHWIKAP----NYSCVMTGSWDKTLKFWDT 158
Query: 394 TPKRTLEFLQ 403
+ LQ
Sbjct: 159 RSSNPMMVLQ 168
>pdb|1U4C|A Chain A, Structure Of Spindle Checkpoint Protein Bub3
pdb|1U4C|B Chain B, Structure Of Spindle Checkpoint Protein Bub3
Length = 349
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 115 EGKLRVNIADRLANATVVCTKFNGKPHRAS---------ITCIAVTSDSKHVYSACKDGI 165
+G++ V D + +F + HR + + I + K +Y+A DGI
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274
Query: 166 IIKWLLETRSKV 177
I W L+TR K+
Sbjct: 275 ISCWNLQTRKKI 286
>pdb|1YFQ|A Chain A, High Resolution S. Cerevisiae Bub3 Mitotic Checkpoint
Protein
Length = 342
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 115 EGKLRVNIADRLANATVVCTKFNGKPHRAS---------ITCIAVTSDSKHVYSACKDGI 165
+G++ V D + +F + HR + + I + K +Y+A DGI
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274
Query: 166 IIKWLLETRSKV 177
I W L+TR K+
Sbjct: 275 ISCWNLQTRKKI 286
>pdb|2I3S|A Chain A, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|C Chain C, Bub3 Complex With Bub1 Glebs Motif
pdb|2I3S|E Chain E, Bub3 Complex With Bub1 Glebs Motif
Length = 349
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 115 EGKLRVNIADRLANATVVCTKFNGKPHRAS---------ITCIAVTSDSKHVYSACKDGI 165
+G++ V D + +F + HR + + I + K +Y+A DGI
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274
Query: 166 IIKWLLETRSKV 177
I W L+TR K+
Sbjct: 275 ISCWNLQTRKKI 286
>pdb|2I3T|A Chain A, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|C Chain C, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|E Chain E, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
pdb|2I3T|G Chain G, Bub3 Complex With Mad3 (Bubr1) Glebs Motif
Length = 341
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 9/72 (12%)
Query: 115 EGKLRVNIADRLANATVVCTKFNGKPHRAS---------ITCIAVTSDSKHVYSACKDGI 165
+G++ V D + +F + HR + + I + K +Y+A DGI
Sbjct: 215 DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274
Query: 166 IIKWLLETRSKV 177
I W L+TR K+
Sbjct: 275 ISCWNLQTRKKI 286
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,364,239
Number of Sequences: 62578
Number of extensions: 462151
Number of successful extensions: 1745
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 999
Number of HSP's gapped (non-prelim): 391
length of query: 454
length of database: 14,973,337
effective HSP length: 102
effective length of query: 352
effective length of database: 8,590,381
effective search space: 3023814112
effective search space used: 3023814112
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)