BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17903
(355 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|193702269|ref|XP_001948634.1| PREDICTED: replication factor C subunit 4-like [Acyrthosiphon
pisum]
Length = 359
Score = 457 bits (1175), Expect = e-126, Method: Compositional matrix adjust.
Identities = 221/358 (61%), Positives = 277/358 (77%), Gaps = 6/358 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGK--TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLK 58
M++FL+TGK+ +D S+S S G N PWVEKYRP+T+D+V EQ E+V+VLK
Sbjct: 1 MDSFLKTGKINQDQQSTSSGLKSKDGSRGISNSTTPWVEKYRPRTVDEVSEQSEIVAVLK 60
Query: 59 KCLS-GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117
+CL GAD+PH LFYGPPGTGKTST+IAA QLFGDMY+ R+LELNASDDRGIQVIRDKV
Sbjct: 61 QCLEQGADMPHLLFYGPPGTGKTSTIIAAARQLFGDMYKNRMLELNASDDRGIQVIRDKV 120
Query: 118 KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
KTFAQ TAS DGKPCPPFKIV+LDEADSMT AQAALRRT+E+ETK+TRFCLICNYV
Sbjct: 121 KTFAQLTASDRRPDGKPCPPFKIVVLDEADSMTAPAQAALRRTIERETKTTRFCLICNYV 180
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
SCII PLTSRCSKFRFKPL+ MLTRL++IC++E V C + L LV+ SGGDMRRAIT
Sbjct: 181 SCIIDPLTSRCSKFRFKPLSHEIMLTRLEHICKEEGVKCAPRVLARLVDASGGDMRRAIT 240
Query: 238 CLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSA 294
LQS ARLKG GI DVLEV G +P+ W+++++ ++ +Q ++ ++EDLI EAYSA
Sbjct: 241 SLQSTARLKGEVGIEEVDVLEVVGTVPDIWLDRMIDMGRMYDYQKMDGFVEDLIFEAYSA 300
Query: 295 TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+Q+ +Q HD ++ ++ L D QKA+I + ++ C RLQ+G SEY+ +L+L V KA K
Sbjct: 301 SQILEQLHDKIVFSTDLKDNQKAIICKSISICAYRLQEGCSEYVTLLNLLCSVAKALK 358
>gi|91081833|ref|XP_974716.1| PREDICTED: similar to replication factor C, 37-kDa subunit,
putative [Tribolium castaneum]
gi|270006308|gb|EFA02756.1| hypothetical protein TcasGA2_TC008489 [Tribolium castaneum]
Length = 355
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 223/354 (62%), Positives = 278/354 (78%), Gaps = 7/354 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL++GKL S S+ ++K VPWVEKYRP+T+ DV+EQ E VSVL++C
Sbjct: 1 MQAFLKSGKLDN---SDKSVPSSSKTSKKSKAVPWVEKYRPRTVSDVVEQSEAVSVLQQC 57
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+SGADLP+ LFYGPPGTGKTST++AA QLFGD YR+RILELNASD+RGIQVIRDKVKTF
Sbjct: 58 ISGADLPNLLFYGPPGTGKTSTILAAARQLFGDYYRDRILELNASDERGIQVIRDKVKTF 117
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TASG DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE++STRFCLICNYVS I
Sbjct: 118 AQLTASGTRPDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRI 177
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+PLTSRC+KFRFKPL E +L RL +IC +E+V C K L LVETSGGDMRRAIT LQ
Sbjct: 178 IEPLTSRCTKFRFKPLNEAMILERLSFICGKENVECSDKTLAALVETSGGDMRRAITSLQ 237
Query: 241 SCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQ 296
SCA+LKG G I +DVLEVTGV+P W++K L K L+ ++++++ EAY+A+Q
Sbjct: 238 SCAKLKGSGVPISIDDVLEVTGVVPERWLKKFLDVCKTKDQNKLQAFLKEMMFEAYAASQ 297
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
+ +Q + +++ +D+QKA+I +KL + +LQDG SE+IQ+LDLG +I+A
Sbjct: 298 ILEQLNQYIVNFEGFTDQQKAIIGQKLGVVSFKLQDGGSEFIQLLDLGCSIIRA 351
>gi|195389432|ref|XP_002053381.1| GJ23369 [Drosophila virilis]
gi|194151467|gb|EDW66901.1| GJ23369 [Drosophila virilis]
Length = 356
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/356 (59%), Positives = 272/356 (76%), Gaps = 4/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK S+ K + + + R P PWVEKYRP+++DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGKSSSGNSSTDKQATNAPTERRKPPAPWVEKYRPRSVDDVVEQSEVVAVLRKC 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ GADLP+ L YGPPGTGKTST++AA Q+FGDMYR+RILELNASD+RGI V+R K+K F
Sbjct: 61 VEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMYRDRILELNASDERGINVVRTKIKNF 120
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TAS DG+ CPPFKI++LDEADSMTHAAQAALRRTMEKE++STRFCLICNYVS I
Sbjct: 121 AQLTASNVRPDGRSCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRI 180
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E ++ RLQ+ICE E V D A +++V SGGDMRRAIT LQ
Sbjct: 181 IVPITSRCSKFRFKALGETQIIARLQHICELEGVRIDPDAYKSIVRISGGDMRRAITTLQ 240
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E +N +D+LE++G+IP ++E L+V +++ LE ++ ++ AYS Q
Sbjct: 241 SCYRLKGAEHTINTDDLLEMSGIIPEHYLEDYLEVCRSGNYERLEHFVREIGYSAYSVGQ 300
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+ DQF + ++ SL+DKQKA+I +KL EC RLQDG SEY+QI+DLG +I A K
Sbjct: 301 MMDQFVEFIVRCGSLTDKQKAIICDKLGECCYRLQDGGSEYLQIMDLGCTIILALK 356
>gi|195038153|ref|XP_001990525.1| GH18198 [Drosophila grimshawi]
gi|193894721|gb|EDV93587.1| GH18198 [Drosophila grimshawi]
Length = 356
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 211/356 (59%), Positives = 276/356 (77%), Gaps = 4/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AF + GK ++ K +++ + + R P PWVEKYRP+++DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFFKPGKANIGNSATDKQTINATAERRKPPAPWVEKYRPRSVDDVVEQSEVVAVLRKC 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ GADLP+ L YGPPGTGKTST++AA Q+FGDMYRERILELNASD+RGI V+R K+K F
Sbjct: 61 VEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMYRERILELNASDERGINVVRTKIKNF 120
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TAS DG+PCPPFKI++LDEADSMTHAAQAALRRTMEKE++STRFCLICNYVS I
Sbjct: 121 AQLTASSVRPDGRPCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRI 180
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E ++TRLQ+IC+ ESV + A +++V+ SGGDMRRAIT LQ
Sbjct: 181 IVPITSRCSKFRFKALGETQIITRLQHICDLESVSIEPDAYQSIVKISGGDMRRAITTLQ 240
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E +N +D+LE++G+IP +++ L+V +++ LE ++ ++ AYS Q
Sbjct: 241 SCYRLKGAEHTINSDDLLEMSGIIPEHYLDDYLEVCRSGNYERLEHFVREIGYSAYSVGQ 300
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+ +QF + V+ SL+DKQKA+I +KL EC RLQDG SEY+QI+DLG +I A K
Sbjct: 301 MMEQFVEYVVRCGSLTDKQKAIICDKLGECCYRLQDGGSEYLQIMDLGCTIILALK 356
>gi|170030843|ref|XP_001843297.1| replication factor C subunit 4 [Culex quinquefasciatus]
gi|167868416|gb|EDS31799.1| replication factor C subunit 4 [Culex quinquefasciatus]
Length = 355
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 214/354 (60%), Positives = 271/354 (76%), Gaps = 7/354 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M AF +TGK G D + V KT + VPWVEKYRPK +DDV+EQ EVV+VL++
Sbjct: 1 MHAFFKTGKAG-DTTTGDGQPVEKRSKTHS--VPWVEKYRPKNVDDVVEQGEVVAVLRES 57
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
LS ADLP+ L YGPPGTGKTST++AA QLFGDM++ERILELNASDDRGI VIR+KVKTF
Sbjct: 58 LSTADLPNLLLYGPPGTGKTSTILAAARQLFGDMFKERILELNASDDRGIAVIRNKVKTF 117
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ ASG DGKPCPPFKIVILDEAD+MTHAAQAALRRTMEKETK+TRFCL+CNYVS I
Sbjct: 118 AQLAASGTRPDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSRI 177
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+P+TSRC+KFRFKPL + ++ RL++IC+QE+V + +A + +V+ SGGD+RRAIT LQ
Sbjct: 178 IEPITSRCTKFRFKPLRQEKIIERLRFICDQETVEVEDQAYQDIVDISGGDLRRAITTLQ 237
Query: 241 SCARLKGGEG-IVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E I + D+LE++GV+P ++E + K ++ LE Y++ L +AYS Q
Sbjct: 238 SCHRLKGKEAKIEHSDILEMSGVVPRKYLEDFVSVCKTSNYSKLEDYVKGLTHDAYSVGQ 297
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
LF+Q D ++ L+DKQK+ I +K+ +C RLQ G SEYIQI+DLG + I+A
Sbjct: 298 LFEQLTDFIIMHEGLTDKQKSTICDKIGDCCFRLQGGGSEYIQIMDLGCVTIQA 351
>gi|195111460|ref|XP_002000296.1| GI10150 [Drosophila mojavensis]
gi|193916890|gb|EDW15757.1| GI10150 [Drosophila mojavensis]
Length = 354
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/356 (58%), Positives = 273/356 (76%), Gaps = 6/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ GK ++ K + + + R P PWVEKYRP++++DV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKAGKSANG--TTEKQASNAPTERRKPPAPWVEKYRPRSVEDVVEQSEVVAVLRKC 58
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ GADLP+ L YGPPGTGKTST++AA Q+FGDMYR+RILELNASD+RGI V+R K+K F
Sbjct: 59 VEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMYRDRILELNASDERGINVVRTKIKNF 118
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TAS DG+PCPPFKI++LDEADSMTHAAQAALRRTMEKE++STRFCLICNYVS I
Sbjct: 119 AQLTASNVRPDGRPCPPFKIIVLDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRI 178
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E ++ RL++IC QE+V D A +++V+ SGGDMRRAIT LQ
Sbjct: 179 IVPITSRCSKFRFKALGETQIIARLKHICMQENVNIDPDAYKSIVKISGGDMRRAITTLQ 238
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG + +N +D+LE++G+IP ++E L+V ++ LE ++ ++ AYS Q
Sbjct: 239 SCYRLKGSDHTINTDDLLEMSGIIPEHYLEDYLEVCRSGKYERLEHFVREIGYSAYSVGQ 298
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+ +QF + ++ SL+DKQKA+I +KL EC RLQDG SEY+QI+DLG +I A K
Sbjct: 299 MMEQFVEFIVRCGSLTDKQKAIICDKLGECCYRLQDGGSEYLQIMDLGCTIILALK 354
>gi|157167248|ref|XP_001652243.1| replication factor C, 37-kDa subunit, putative [Aedes aegypti]
gi|94469174|gb|ABF18436.1| replication factor C [Aedes aegypti]
gi|108877369|gb|EAT41594.1| AAEL006788-PA [Aedes aegypti]
Length = 358
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 223/355 (62%), Positives = 279/355 (78%), Gaps = 6/355 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGK-TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M AFL+TGK+ D+PS + S +S K T+ VPWVEKYRPK++DDV+EQ EVV+VL++
Sbjct: 1 MHAFLKTGKIS-DSPSKAGPSDGSSEKRTKTHSVPWVEKYRPKSVDDVVEQAEVVAVLRE 59
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
LS ADLP+ L YGPPGTGKTST++AA QLFGDM++ERILELNASDDRGI VIR+KVKT
Sbjct: 60 SLSTADLPNLLLYGPPGTGKTSTILAAARQLFGDMFKERILELNASDDRGIAVIRNKVKT 119
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ TASG DGKPCPPFKIVILDEAD+MTHAAQAALRRTMEKETK+TRFCL+CNYVS
Sbjct: 120 FAQLTASGTRTDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYVSR 179
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+P+TSRC+KFRFKPL E ++ RL++ICEQE+V + +A +V+ SGGD+RRAIT L
Sbjct: 180 IIEPITSRCTKFRFKPLGEEKVIERLRFICEQENVDVEDQAYREIVDISGGDLRRAITTL 239
Query: 240 QSCARLKGGEG-IVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSAT 295
QSC RLKG E I + D+LE++GV+P ++E + K ++ LE Y+ +L +AYS
Sbjct: 240 QSCHRLKGKEAKIQHTDILEMSGVVPRKYLEDFVSVCKTANYGKLEDYVRNLTYDAYSVG 299
Query: 296 QLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
QLF+Q + V+ LSDKQK++I +KL EC RLQ G SEYIQI+DLG + I+A
Sbjct: 300 QLFEQLTEFVVLHDGLSDKQKSIICDKLGECCFRLQGGGSEYIQIMDLGCVTIQA 354
>gi|195163892|ref|XP_002022783.1| GL14564 [Drosophila persimilis]
gi|194104806|gb|EDW26849.1| GL14564 [Drosophila persimilis]
Length = 354
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/356 (58%), Positives = 269/356 (75%), Gaps = 6/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK G A S S + + R P PWVEKYRP+++DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGKSG--ASSGSDKPQGGTVERRKPPAPWVEKYRPRSVDDVVEQSEVVAVLRKC 58
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ GADLP+ L YGPPGTGKTST++AA Q+FGDMY++RILELNASD+RGI V+R K+K F
Sbjct: 59 VEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMYKDRILELNASDERGINVVRTKIKNF 118
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q +AS DG+P PPFKI+ILDEADSMTHAAQ+ALRRTMEKE+ STRFCLICNYVS I
Sbjct: 119 SQLSASHVRPDGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSRI 178
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFKPL E ++ RLQ+ICE ESV D A +T+V+ SGGD+RRAIT LQ
Sbjct: 179 IVPITSRCSKFRFKPLGEEKIIARLQHICELESVKIDPDAYKTIVKISGGDLRRAITTLQ 238
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RL+G E +N D+ E++GVIP+ ++ + V +++ LE+++ D+ AYS Q
Sbjct: 239 SCFRLQGSEHTINTADLFEMSGVIPDYLLDDFMDVCRSGNYERLEQFVRDIGYSAYSVGQ 298
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+ +Q + ++ +L+D QKA I EKL EC RLQDG SEY+QI+DLG +I A K
Sbjct: 299 MMEQLVEFIVHHPNLTDPQKAKICEKLGECCYRLQDGGSEYLQIMDLGCCIILALK 354
>gi|18859927|ref|NP_573245.1| CG8142 [Drosophila melanogaster]
gi|17862532|gb|AAL39743.1| LD35209p [Drosophila melanogaster]
gi|22832754|gb|AAF48768.2| CG8142 [Drosophila melanogaster]
Length = 353
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/356 (58%), Positives = 267/356 (75%), Gaps = 7/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK S S T R P PWVEKYRP+ +DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGK---STAGSGDKSQGTPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKC 57
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ G DLP+ L YGPPGTGKTST++AA Q+FGDM+++RILELNASD+RGI V+R K+K F
Sbjct: 58 VEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNF 117
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q +AS DGKPCPPFKI+ILDEADSMTHAAQ+ALRRTMEKE++STRFCLICNYVS I
Sbjct: 118 SQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRI 177
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E+ ++ RL+YICE E V + A +++V+ SGGD+RRAIT LQ
Sbjct: 178 IVPITSRCSKFRFKALGEDKVIDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQ 237
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E I+N D+ E++GVIP ++E L+V +++ LE+++ ++ AYS Q
Sbjct: 238 SCYRLKGPEHIINTADLFEMSGVIPEYYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQ 297
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+ +QF + ++ L+D QKA I +KL EC RLQDG SEY+QI+DLG +I A K
Sbjct: 298 MMEQFVEFIVHHPGLNDPQKATICDKLGECCFRLQDGGSEYLQIMDLGCCIILALK 353
>gi|357617013|gb|EHJ70534.1| replication factor C4 [Danaus plexippus]
Length = 350
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/355 (58%), Positives = 271/355 (76%), Gaps = 8/355 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNK-PVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M+AFL+TGK+ S+ K S S T+ K P PWVEKYRPKTIDD+++Q EVV VL++
Sbjct: 1 MQAFLKTGKIS----STDKPSTSGVKSTKKKAPAPWVEKYRPKTIDDIVDQGEVVQVLRE 56
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
CL+G DLPH LFYGPPGTGKTS ++AA QLFGD+ RER+LELNASD+RGIQVIRDKVKT
Sbjct: 57 CLAGGDLPHLLFYGPPGTGKTSAILAAARQLFGDITRERVLELNASDERGIQVIRDKVKT 116
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T S DG+PCPP+K+VILDEADSMT AAQAALRRTME+ET++TRFCLICNYVS
Sbjct: 117 FAQLTVSNTRPDGRPCPPYKLVILDEADSMTTAAQAALRRTMERETRTTRFCLICNYVSR 176
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRAITC 238
II P+TSRCSKFRFKPLA ++ RLQ +C+ E+V + D + L V+T GGD+RRA+T
Sbjct: 177 IIPPITSRCSKFRFKPLARENVIKRLQEVCKSEAVEVGDGEVLHQAVDTCGGDLRRALTA 236
Query: 239 LQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLF 298
LQ C RL G I + ++EVTG++P +++ L V ++ LE+++E+ +++AYSA+QL
Sbjct: 237 LQCCQRLLG--KITADGLIEVTGLVPENLVDEFLNVKNYNELERFVENFLMDAYSASQLL 294
Query: 299 DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANKT 353
+Q + V++A L++KQK +I EKLA C+ RL +G +E +Q+ DLG VI AN
Sbjct: 295 EQLSERVVNAGHLTNKQKCVISEKLAVCSHRLLEGGAEVMQLTDLGCTVIMANNN 349
>gi|125982841|ref|XP_001355186.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
gi|54643499|gb|EAL32243.1| GA20846 [Drosophila pseudoobscura pseudoobscura]
Length = 354
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/356 (58%), Positives = 268/356 (75%), Gaps = 6/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK G A S S + + R P PWVEKYRP ++DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGKSG--ASSGSDKPQGGTVERRKPPAPWVEKYRPSSVDDVVEQSEVVAVLRKC 58
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ GADLP+ L YGPPGTGKTST++AA Q+FGDMY++RILELNASD+RGI V+R K+K F
Sbjct: 59 VEGADLPNMLLYGPPGTGKTSTILAAARQIFGDMYKDRILELNASDERGINVVRTKIKNF 118
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q +AS DG+P PPFKI+ILDEADSMTHAAQ+ALRRTMEKE+ STRFCLICNYVS I
Sbjct: 119 SQLSASHVRPDGRPVPPFKIIILDEADSMTHAAQSALRRTMEKESSSTRFCLICNYVSRI 178
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFKPL E ++ RLQ+ICE ESV D A +T+V+ SGGD+RRAIT LQ
Sbjct: 179 IVPITSRCSKFRFKPLGEEKIIARLQHICELESVKIDPDAYKTIVKISGGDLRRAITTLQ 238
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RL+G E +N D+ E++GVIP+ ++ + V +++ LE+++ D+ AYS Q
Sbjct: 239 SCFRLQGSEHTINTADLFEMSGVIPDYLLDDFMDVCRSGNYERLEQFVRDIGYSAYSVGQ 298
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+ +Q + ++ +L+D QKA I EKL EC RLQDG SEY+QI+DLG +I A K
Sbjct: 299 MMEQLVEFIVHHPNLTDPQKAKICEKLGECCYRLQDGGSEYLQIMDLGCCIILALK 354
>gi|156550041|ref|XP_001605078.1| PREDICTED: replication factor C subunit 4-like [Nasonia
vitripennis]
Length = 358
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/354 (60%), Positives = 271/354 (76%), Gaps = 4/354 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M AFL+TGKLG TS R K PWVEKYRPKT++DV+EQ EVV VL++C
Sbjct: 1 MHAFLKTGKLGAAEAKKPSTSKGKESNARAKATPWVEKYRPKTVEDVVEQGEVVEVLRQC 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
LSG D P+ L YGPPGTGKTST++AA QLFG M++ERILELNASD+RGIQV+R+KVK F
Sbjct: 61 LSGGDFPNLLLYGPPGTGKTSTILAAARQLFGSMFKERILELNASDERGIQVVREKVKKF 120
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TA DGKPCPPFKI+ILDEADSMT AAQ+ALRRTMEKE+++TRFCLICNYVS I
Sbjct: 121 AQLTAGNTRPDGKPCPPFKIIILDEADSMTDAAQSALRRTMEKESQTTRFCLICNYVSRI 180
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+PLTSRC+KFRFKPL E ++ RL+YIC +E + + L+ +V+ SGGD+RRAITCLQ
Sbjct: 181 IEPLTSRCTKFRFKPLGEEKIIERLEYICGEEDLKAEKSVLKLVVDASGGDLRRAITCLQ 240
Query: 241 SCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
S RLKG G + N DVLEVTGV+P W++ LL+V ++ +E Y++ +LEAYSA+Q
Sbjct: 241 SVTRLKGIGIEVTNNDVLEVTGVVPTKWLDDLLRVCETKNYNEVEAYVDKFMLEAYSASQ 300
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
+ DQ +DIV+ +++L+DKQKA I EKL EC+ RL +G SEY+Q + L +++A
Sbjct: 301 VVDQLNDIVIYSNTLTDKQKAYIGEKLGECSYRLLEGGSEYVQFMSLCCGIMQA 354
>gi|427779307|gb|JAA55105.1| hypothetical protein [Rhipicephalus pulchellus]
Length = 392
Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/318 (64%), Positives = 252/318 (79%), Gaps = 5/318 (1%)
Query: 31 KPV--PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
KPV PWVEKYRPKT+DDV Q EVVSVLKK L GADLP+ LFYGPPGTGKTST++A
Sbjct: 62 KPVQIPWVEKYRPKTVDDVAHQDEVVSVLKKSLQGADLPNLLFYGPPGTGKTSTILALAR 121
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
+LFGDMY+ RILELNASD+RGIQV+R+K+KTF+Q TASG DGKPCPP+KIVILDEADS
Sbjct: 122 ELFGDMYKSRILELNASDERGIQVVREKIKTFSQLTASGTGPDGKPCPPYKIVILDEADS 181
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT +AQAALRRTMEKETK+TRFCLICNY+S II PLTSRCSKFRFKPL ++ +L RL+ I
Sbjct: 182 MTASAQAALRRTMEKETKTTRFCLICNYISRIIDPLTSRCSKFRFKPLPKDILLERLRNI 241
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
C E+V CD + L+ L++ GDMRRAIT QS +RLK E + +EDV EV G+IPN W+
Sbjct: 242 CTAEAVQCDDQVLDFLMDACEGDMRRAITLFQSVSRLKCNEQVTSEDVAEVAGIIPNQWV 301
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
+ LL +S++ L +EDL+LE ++A+QLF Q HD ++ ++ DKQK+ I EKLA
Sbjct: 302 DGLLTSCASNSYEKLSATVEDLVLEGFAASQLFSQLHDAIVLSNKYDDKQKSAIAEKLAI 361
Query: 326 CNARLQDGASEYIQILDL 343
C+ RL +GA EY+QI+DL
Sbjct: 362 CDHRLLEGADEYLQIMDL 379
>gi|194763220|ref|XP_001963731.1| GF21175 [Drosophila ananassae]
gi|190618656|gb|EDV34180.1| GF21175 [Drosophila ananassae]
Length = 352
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/356 (58%), Positives = 267/356 (75%), Gaps = 8/356 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK G + + + R P WVEKYRP+ +DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGKSGTGLGEKQQGA----SERRKPPTLWVEKYRPRNVDDVVEQSEVVAVLRKC 56
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ G DLP+ L YGPPGTGKTST++AA Q+FGDMY+ RILELNASD+RGI V+R K+KTF
Sbjct: 57 VEGGDLPNMLLYGPPGTGKTSTILAAGRQIFGDMYKNRILELNASDERGINVVRTKIKTF 116
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q AS DG+PCPPFKIVILDEADSMTHAAQ+ALRRTMEKE++STRFCLICNYVS I
Sbjct: 117 SQLAASSVRPDGRPCPPFKIVILDEADSMTHAAQSALRRTMEKESQSTRFCLICNYVSRI 176
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E ++ RLQ+ICEQE V D A +++V+ SGGD+RRAIT LQ
Sbjct: 177 IVPITSRCSKFRFKSLGEEKVIARLQFICEQEGVQIDPDAYKSIVKISGGDLRRAITTLQ 236
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E +N D+ E++GVIP+ +++ L+V ++ LEK++ D+ AYS Q
Sbjct: 237 SCFRLKGPEHTINTADLFEMSGVIPDYYLDDYLEVCRSGDYERLEKFVRDIGYSAYSVGQ 296
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+ +QF + +++ L+D QKA I +KL EC RLQDGASEY+QI+DLG +I A K
Sbjct: 297 MMEQFVEFIVNHPGLNDPQKAKICDKLGECCFRLQDGASEYLQIMDLGCCIILALK 352
>gi|118783134|ref|XP_312782.3| AGAP003093-PA [Anopheles gambiae str. PEST]
gi|116129067|gb|EAA08477.3| AGAP003093-PA [Anopheles gambiae str. PEST]
Length = 361
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/359 (59%), Positives = 277/359 (77%), Gaps = 7/359 (1%)
Query: 1 MEAFLRTGKLGKDAPSSS---KTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+TG+ ++ ++ + +T+ K VPWVEKYRPK++DDV+EQ EVV+VL
Sbjct: 1 MQAFLKTGRTTGESSAAGPGGDSGTTTATKRPKHSVPWVEKYRPKSVDDVVEQAEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117
++ LS DLP+ L YGPPGTGKTST++AA QLFGDM++ERILELNASDDRGI VIR+KV
Sbjct: 61 RESLSTTDLPNLLLYGPPGTGKTSTILAAARQLFGDMFKERILELNASDDRGIAVIRNKV 120
Query: 118 KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
KTFAQ TASG DGKPCPPFKIVILDEAD+MTHAAQAALRRTMEKETK+TRFCL+CNYV
Sbjct: 121 KTFAQLTASGTRTDGKPCPPFKIVILDEADAMTHAAQAALRRTMEKETKTTRFCLVCNYV 180
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
S II+P+TSRC+KFRFKPL E ++ RL+YIC+QE V D + +V+ SGGD+RRAIT
Sbjct: 181 SRIIEPITSRCTKFRFKPLGEEKIIERLRYICDQEGVTVDDGVYKDIVDISGGDLRRAIT 240
Query: 238 CLQSCARLKGGEG-IVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYS 293
LQSC RLKG + I +D+LE++GV+P ++E+ + V ++ LE+Y+++L +AYS
Sbjct: 241 TLQSCHRLKGAQARIERQDILEMSGVVPERYLEEFISVCKSSNYSKLEEYVQNLSYDAYS 300
Query: 294 ATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
QLF+Q + ++ L++KQKA+I +KL EC RL G SEYIQI+DLG I I+A K
Sbjct: 301 VGQLFEQLTEYIVYNDGLTEKQKAVICDKLGECCFRLHGGGSEYIQIMDLGCITIQALK 359
>gi|242024266|ref|XP_002432549.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212518009|gb|EEB19811.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 360
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/356 (60%), Positives = 267/356 (75%), Gaps = 6/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSV-STSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLK 58
ME FL+TGKLG ++ SS + S GK N +PWVEKYRPKT+DD++EQ EVVSVL+
Sbjct: 1 MEGFLKTGKLGNNSNISSISKTDSLKGKEENYSNIPWVEKYRPKTVDDIVEQVEVVSVLR 60
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK 118
+ L GADLP+ LFYGPPGTGKTST++AA QLFGDM++ERILELNASDDRGIQVIRDKVK
Sbjct: 61 QTLKGADLPNLLFYGPPGTGKTSTILAAARQLFGDMFKERILELNASDDRGIQVIRDKVK 120
Query: 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
TFAQ +AS DG+PCPPFKIV+LDEADSMT AAQAALRRTME TK+TRFCL+CNYVS
Sbjct: 121 TFAQLSASSTRPDGQPCPPFKIVLLDEADSMTSAAQAALRRTMELYTKTTRFCLVCNYVS 180
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
II P+TSRCSKFRFKPL EN + RL I + E V + L TLV+ +GGD+RRAIT
Sbjct: 181 RIIPPITSRCSKFRFKPLGENKIFERLSKISKAEKVNINDDTLMTLVKCTGGDLRRAITS 240
Query: 239 LQSCARLK-GGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSA 294
LQSCAR+K GE I EDV EV GVIP+ I +L+ +++ +E ++ ++ +AYS
Sbjct: 241 LQSCARIKEEGELITIEDVNEVAGVIPDSVITELINTCNKNNYTTIEDFVNEVTYQAYSV 300
Query: 295 TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
QL +Q + ++ LSDK KA I +KL+ C++RL DGASEY+ ++DL + KA
Sbjct: 301 AQLMEQLTEYIIQDFKLSDKAKATIFDKLSLCSSRLIDGASEYLLLIDLCCTIAKA 356
>gi|195481163|ref|XP_002101540.1| GE15569 [Drosophila yakuba]
gi|194189064|gb|EDX02648.1| GE15569 [Drosophila yakuba]
Length = 353
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/356 (58%), Positives = 270/356 (75%), Gaps = 7/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK A S K +T+ + R P PWVEKYRP+ +DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGK--STAGSGDKNQGATTTR-RKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKC 57
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ G DLP+ L YGPPGTGKTST++AA Q+FGDM+++RILELNASD+RGI V+R K+K F
Sbjct: 58 VEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNF 117
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q +AS DGKPCPPFKI+ILDEADSMTHAAQ+ALRRTMEKE++STRFCLICNYVS I
Sbjct: 118 SQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRI 177
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L ++ ++ RL+YIC E V + A +++V+ SGGD+RRAIT LQ
Sbjct: 178 IVPITSRCSKFRFKALGDDKVIDRLKYICAMEGVKIEEDAYKSIVKISGGDLRRAITTLQ 237
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E I+N D+ E++GVIP ++E L+V +++ LE+++ ++ AYS Q
Sbjct: 238 SCYRLKGPEHIINTADLFEMSGVIPEYYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQ 297
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+ +QF + V+ L+D QKA I +KL EC RLQDG SEY+QI+DLG +I A K
Sbjct: 298 MMEQFVEFVVHHPGLNDPQKAKICDKLGECCFRLQDGGSEYLQIMDLGCCIILALK 353
>gi|346471367|gb|AEO35528.1| hypothetical protein [Amblyomma maculatum]
Length = 358
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/348 (60%), Positives = 258/348 (74%), Gaps = 8/348 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPV--PWVEKYRPKTIDDVIEQQEVVSVLK 58
M AFL++ P K S +T KPV PWVEKYRPKT+DDV Q EVVSVLK
Sbjct: 1 MHAFLKSANPNLAFP---KEKTKESKQTAKKPVHIPWVEKYRPKTVDDVAHQDEVVSVLK 57
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK 118
K L GADLP+ LFYGPPGTGKTST++A +LFGDMY+ RILELNASD+RGIQV+R+K+K
Sbjct: 58 KSLQGADLPNLLFYGPPGTGKTSTILALARELFGDMYKSRILELNASDERGIQVVREKIK 117
Query: 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
TF+Q TA DGKPCPPFKIVILDEADSMT +AQAALRRTMEKETKSTRFCLICNY+S
Sbjct: 118 TFSQLTAHAVGPDGKPCPPFKIVILDEADSMTASAQAALRRTMEKETKSTRFCLICNYIS 177
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
II PLTSRCSKFRFKPL + +L RL+ IC E V C+ + L+ L++ GDMRRAIT
Sbjct: 178 RIIDPLTSRCSKFRFKPLPKEVLLERLRSICTAEGVQCEDEVLDFLMDACEGDMRRAITL 237
Query: 239 LQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSAT 295
QS +RLK E + + DV EV G+I WI+ LL +S++ L +EDL+LE ++A+
Sbjct: 238 FQSVSRLKCDEPVTSHDVAEVAGIISKKWIDDLLASCASNSYEKLSATVEDLVLEGFAAS 297
Query: 296 QLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
QLF Q HD ++ +++ +DKQK+ I EKLA C+ RL +GA EY+QI+DL
Sbjct: 298 QLFSQLHDTIVLSTNYNDKQKSAITEKLAICDHRLLEGADEYLQIMDL 345
>gi|241829143|ref|XP_002414742.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
gi|215508954|gb|EEC18407.1| replication factor C, subunit RFC4, putative [Ixodes scapularis]
Length = 363
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/349 (58%), Positives = 264/349 (75%), Gaps = 6/349 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M AFL++ P + + R VPWVEKYRPKT+DDV Q EVVSVLKK
Sbjct: 1 MHAFLKSANPNLAPPLKERGKEAKQKPKREVHVPWVEKYRPKTVDDVAHQDEVVSVLKKS 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
L GADLP+ LFYGPPGTGKTST++A +LFGDMY+ RILELNASD+RGIQV+R+K+K F
Sbjct: 61 LLGADLPNLLFYGPPGTGKTSTILALSRELFGDMYKSRILELNASDERGIQVVREKIKNF 120
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q TA+ DG+PCPPFKIVILDEADSMT +AQAALRRTMEK+TK+TRFCLICNY+S I
Sbjct: 121 SQLTANATRPDGRPCPPFKIVILDEADSMTPSAQAALRRTMEKQTKTTRFCLICNYISRI 180
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALE---TLVETSGGDMRRAIT 237
I+PLTSRCSKFRFKPL ++ +L RLQ IC E+V CD +A+ L GDMRRAIT
Sbjct: 181 IEPLTSRCSKFRFKPLPKDILLERLQKICTAENVQCDDEAILFFFFLKSACLGDMRRAIT 240
Query: 238 CLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSA 294
QS +RLK GE ++ EDV EV +IP W++++L+ +S++ L++ I+DL+LE Y A
Sbjct: 241 LFQSVSRLKLGEPVLTEDVAEVACIIPKSWVDRVLQTCASNSYEKLDQTIQDLVLEGYPA 300
Query: 295 TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+QLF+Q HD++++++ DKQK++I+EKLA C+ RL +GA EY+Q++DL
Sbjct: 301 SQLFNQLHDVLIASADYDDKQKSVIMEKLAICDHRLLEGADEYLQMMDL 349
>gi|195447178|ref|XP_002071099.1| GK25619 [Drosophila willistoni]
gi|194167184|gb|EDW82085.1| GK25619 [Drosophila willistoni]
Length = 355
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/357 (57%), Positives = 272/357 (76%), Gaps = 7/357 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK A ++ + + + R P PWVEKYRP++++DV+EQ EVV+VLKKC
Sbjct: 1 MQAFLKTGK--SSASTNQDKATAAPVERRKPPAPWVEKYRPRSVEDVVEQSEVVAVLKKC 58
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ GADLP+ L YGPPGTGKTST++AA Q+FGDMYR+RILELNASD+RGI V+R K+K F
Sbjct: 59 VEGADLPNMLLYGPPGTGKTSTILAAGRQIFGDMYRDRILELNASDERGINVVRTKIKNF 118
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ +AS DG+PCPPFKI+ILDEADSMTHAAQAALRRTMEKE++STRFCLICNYVS I
Sbjct: 119 AQLSASNVRPDGRPCPPFKIIILDEADSMTHAAQAALRRTMEKESRSTRFCLICNYVSRI 178
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDF-KALETLVETSGGDMRRAITCL 239
I P+TSRC+KFRFK L E+ ++ RL+ IC+ E V D ++ +++V SGGDMRRAIT L
Sbjct: 179 IVPITSRCTKFRFKSLGEDQIIERLKLICQAEGVQMDGEESYKSIVRISGGDMRRAITTL 238
Query: 240 QSCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSAT 295
QSC RLKG E I+N +D+ E++G+IP+ +++ L+V +++ LE ++ ++ AYS
Sbjct: 239 QSCYRLKGPEHIINTQDLFEMSGIIPDYYLDDYLEVCRSGNYKRLEDFVREIGYSAYSVG 298
Query: 296 QLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
Q+ +QF + ++ +L+D QKA I +KL EC RLQDG SEY+QI+DLG I A K
Sbjct: 299 QMLEQFVEFIVLNENLTDPQKARICDKLGECCYRLQDGGSEYLQIMDLGCEAILALK 355
>gi|194892122|ref|XP_001977600.1| GG18160 [Drosophila erecta]
gi|190649249|gb|EDV46527.1| GG18160 [Drosophila erecta]
Length = 353
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 264/356 (74%), Gaps = 7/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK S S R P PWVEKYRP+ +DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGK---STAGSGDKSQGAPAARRKPPAPWVEKYRPRNVDDVVEQSEVVAVLRKC 57
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ G DLP+ L YGPPGTGKTST++AA Q+FGDM+++RILELNASD+RGI V+R K+K F
Sbjct: 58 VEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNF 117
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q +AS DGKPCPPFKI+ILDEADSMTHAAQ+ALRRTMEKE++STRFCLICNYVS I
Sbjct: 118 SQLSASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRI 177
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E+ ++ RL+YIC E V + A +++V+ SGGD+RRAIT LQ
Sbjct: 178 IVPITSRCSKFRFKALGEDKVIDRLKYICGLEGVKIEEDAYKSIVKISGGDLRRAITTLQ 237
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E +N D+ E++GVIP ++E L+V +++ LE+++ ++ AYS Q
Sbjct: 238 SCYRLKGPEHTINTADLFEMSGVIPEYYLEDYLEVCRSGNYERLEQFVREIGFSAYSVGQ 297
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+ +QF + ++ L+D QKA I +KL EC RLQDG SEY+QI+DLG +I A K
Sbjct: 298 MMEQFVEFIVHHPGLNDPQKATICDKLGECCFRLQDGGSEYLQIMDLGCCIILALK 353
>gi|340369406|ref|XP_003383239.1| PREDICTED: replication factor C subunit 4-like [Amphimedon
queenslandica]
Length = 363
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 201/356 (56%), Positives = 263/356 (73%), Gaps = 8/356 (2%)
Query: 1 MEAFLRTG----KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AF + G G D + + G + VPWVEKYRPK +DDV+ Q EVVSV
Sbjct: 1 MDAFFQPGGRAKSKGADKNVGGSKNSAQQGPVEKRKVPWVEKYRPKVVDDVVHQDEVVSV 60
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRD 115
LKK L+G+D P+ LFYGPPGTGKTS ++A H+LFG D+Y+ RILELNASDDRGIQVIRD
Sbjct: 61 LKKTLTGSDFPNLLFYGPPGTGKTSAILAIAHELFGRDLYKSRILELNASDDRGIQVIRD 120
Query: 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KVK+FA+ +AS DGKPCP FKIVILDEADSMT AAQAALRRTMEKE+ STRFCLICN
Sbjct: 121 KVKSFARHSASASRPDGKPCPSFKIVILDEADSMTQAAQAALRRTMEKESTSTRFCLICN 180
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
Y+S II+PLTSRCSKFRFKPL+ + TRL+YIC +E+V C+ KA++ ++ETS GDMR+A
Sbjct: 181 YISRIIEPLTSRCSKFRFKPLSSAILRTRLEYICREENVKCNEKAIDRIIETSDGDMRKA 240
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAY 292
IT LQS RLKG E + +D++E+ GV+P IE LLK +S+ LE +++ + E +
Sbjct: 241 ITFLQSGYRLKGDEEVTEKDIMEIAGVVPQSLIEGLLKTCSSNSYDQLETAVKNFVAEGF 300
Query: 293 SATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVI 348
A Q+ +Q +D++++ L+D QK+ I E++A + RL DGA EY+Q+LD+ S ++
Sbjct: 301 PAVQIMNQLNDVIITHCELNDLQKSAICEQMAVVDRRLSDGADEYLQLLDISSFIM 356
>gi|260800650|ref|XP_002595211.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
gi|229280455|gb|EEN51223.1| hypothetical protein BRAFLDRAFT_284971 [Branchiostoma floridae]
Length = 364
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/359 (57%), Positives = 272/359 (75%), Gaps = 12/359 (3%)
Query: 1 MEAFLRTG-----KLGKDAPSSSKTSVSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVV 54
M+AFL+ G K KD P S + S K R +P PWVEKYRP+T+DDV Q+EVV
Sbjct: 1 MQAFLKGGSSSGLKSKKDKPLSD--AKPGSSKERRQPNAPWVEKYRPRTVDDVAFQEEVV 58
Query: 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVI 113
+VLKK L GADLP+ L YGPPGTGKTST++AA +LFG D+ ++R+LELNASD+RGIQV+
Sbjct: 59 AVLKKSLQGADLPNLLLYGPPGTGKTSTILAAARELFGADLMKQRVLELNASDERGIQVV 118
Query: 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
RDKVKTF+Q +ASG DG+PCPPFKIVILDEADSMT+ AQA+LRRTMEKETK+TRFCLI
Sbjct: 119 RDKVKTFSQLSASGTRPDGRPCPPFKIVILDEADSMTNPAQASLRRTMEKETKTTRFCLI 178
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
CNY+S II+PL SRC+KFRFKPL+ + + RL++I E E V + KA+ L++TS GD+R
Sbjct: 179 CNYISRIIEPLASRCAKFRFKPLSSDILQKRLRHIAEAEKVNAEDKAITALIDTSEGDLR 238
Query: 234 RAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILE 290
+AIT LQS RLKG + I +D+LE+TGVIP + +L++ DS++ LEK ++DL E
Sbjct: 239 KAITYLQSAHRLKGEDAITEKDILEITGVIPKDMVSQLIQTCYSDSYEKLEKSVKDLKAE 298
Query: 291 AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
YSA Q+ Q HD V+ L+DKQK++I EK+A C+ RL DG E++Q++DL S++++
Sbjct: 299 GYSAEQVILQIHDEVLPREDLTDKQKSVIAEKIAVCDQRLADGGDEFLQLMDLTSVMMQ 357
>gi|147905139|ref|NP_001082757.1| replication factor C (activator 1) 4, 37kDa [Xenopus laevis]
gi|34097966|dbj|BAC82198.1| replication factor C p37 subunit [Xenopus laevis]
gi|120537910|gb|AAI29743.1| RFC2 protein [Xenopus laevis]
Length = 363
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/357 (58%), Positives = 265/357 (74%), Gaps = 8/357 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+ G P K S S +G T + KP+PWVEKYRPK +D+V Q EVV+V
Sbjct: 1 MQAFLKGGTSIGTKPVKDKASASGTGSTGESKKQKPIPWVEKYRPKCVDEVAFQDEVVAV 60
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRD 115
LKK L GADLP+ LFYGPPGTGKTST++AA +L+G +++R+R+LELNASD+RGIQV+R+
Sbjct: 61 LKKSLQGADLPNLLFYGPPGTGKTSTILAASRELYGPELFRQRVLELNASDERGIQVVRE 120
Query: 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KVK FAQ T G DGKPCPPFKI+ILDEADSMT AAQAALRRTMEKE+K+TRFCLICN
Sbjct: 121 KVKNFAQLTVGGTRSDGKPCPPFKIIILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 180
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
YVS II+PLTSRCSKFRFKPLA+ RL ICE+E+V +A+ LVE S GD+R+A
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLADKIQTQRLLSICEKENVQITNEAISCLVEVSEGDLRKA 240
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAY 292
IT LQS ARL G+ I E V E+ GV+P ++ +L V SF+ LE +++DLI +
Sbjct: 241 ITFLQSAARLTRGKEITEEIVTEIAGVVPKETLDSVLVVCQSGSFEKLENFVKDLINNGH 300
Query: 293 SATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+ATQL +Q HD+++ L+DKQKA I EKLA+ + L DGA EY+Q+L L ++V++
Sbjct: 301 AATQLVNQLHDVILERGDLTDKQKAFITEKLADVDKCLTDGADEYLQMLGLFAVVMQ 357
>gi|62858553|ref|NP_001016363.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|89266993|emb|CAJ81288.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
gi|134026004|gb|AAI35433.1| replication factor C (activator 1) 4, 37kDa [Xenopus (Silurana)
tropicalis]
Length = 360
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/357 (58%), Positives = 265/357 (74%), Gaps = 8/357 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+ G P K S S +G T + KPVPWVEKYRPK +D+V Q+EVV+V
Sbjct: 1 MQAFLKGGTSISTKPVKDKASASGTGSTGESKKQKPVPWVEKYRPKCVDEVAFQEEVVAV 60
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRD 115
LKK L GADLP+ LFYGPPGTGKTST++AA +L+G +++R+R+LELNASD+RGIQV+R+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAASRELYGPELFRQRVLELNASDERGIQVVRE 120
Query: 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KVK FAQ T G DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICN
Sbjct: 121 KVKNFAQLTVGGTRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 180
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
YVS II+PLTSRCSKFRFKPLA+ RL ICE+E+V +A+ LVE S GD+R+A
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLADKIQTQRLLSICEKENVKITNEAISCLVEVSEGDLRKA 240
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAY 292
IT LQS RL GG+ I E V E+ GV+P ++ +L + SF+ LE +++LI +
Sbjct: 241 ITFLQSATRLTGGKEITEEIVTEIAGVVPKETLDCVLVACQSGSFEKLETVVKNLINNGH 300
Query: 293 SATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+ATQL +Q HD+++ L+DKQKA I EKLAE + L DGA EY+Q+L L ++V++
Sbjct: 301 AATQLVNQLHDVILERGDLTDKQKAFITEKLAEVDKCLADGADEYLQMLGLFAVVMQ 357
>gi|380016014|ref|XP_003691988.1| PREDICTED: replication factor C subunit 4-like [Apis florea]
Length = 357
Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/355 (58%), Positives = 272/355 (76%), Gaps = 7/355 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVP-WVEKYRPKTIDDVIEQQEVVSVLKK 59
M+AFL+TGKLG K S S S + R+ P P WVEKYRPK + DV+EQ EVV VL++
Sbjct: 1 MQAFLKTGKLGPG--EFKKVSNSRSKEERSGPAPPWVEKYRPKNVKDVVEQTEVVEVLRQ 58
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
CL G D P+ LFYGPPGTGKTST++AA QLFG +Y+ER+LELNASD+RGIQV+R+K+K+
Sbjct: 59 CLKGGDFPNLLFYGPPGTGKTSTILAAARQLFGSLYKERVLELNASDERGIQVVREKIKS 118
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ TA G DGK CPPFKI+ILDEADSMT AAQAALRRTMEKE+ STRFCLICNYVS
Sbjct: 119 FAQLTAGGIRDDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESHSTRFCLICNYVSR 178
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRC+KFRFKPL EN ++ RL+YIC++E + + L +VE SGGD+RRAITCL
Sbjct: 179 IIEPLTSRCTKFRFKPLGENKIIERLEYICKEEDLKVEKPVLLKIVEVSGGDLRRAITCL 238
Query: 240 QSCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSAT 295
QS +LKG G I +DVLE+ G++PN W+++L+ K + E++++ +LEAY+ +
Sbjct: 239 QSITKLKGKGIEITVDDVLEIIGIVPNKWLDELIDICKTKDYTKAEEFVDQFMLEAYATS 298
Query: 296 QLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
Q+ +Q + ++ ++ L+DKQKALI + L ECN RL DG +EYIQ++++ +IKA
Sbjct: 299 QVIEQLSERIIYSNELTDKQKALIADTLGECNYRLLDGGNEYIQLMNICCGIIKA 353
>gi|340721765|ref|XP_003399285.1| PREDICTED: replication factor C subunit 4-like [Bombus terrestris]
Length = 357
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/354 (58%), Positives = 272/354 (76%), Gaps = 5/354 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGKLG P + TS S + PWVEKYRP+T++DV+EQ EVV VL++C
Sbjct: 1 MQAFLKTGKLGPGEPKKASTSRSKEEHS-GSATPWVEKYRPRTVEDVVEQAEVVEVLRQC 59
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
L+G D P+ LFYGPPGTGKTST++AA QLFG +Y+ERILELNASD+RGIQV+RDK+K+F
Sbjct: 60 LTGGDFPNLLFYGPPGTGKTSTILAAARQLFGSLYKERILELNASDERGIQVVRDKIKSF 119
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TA G DGK CPPFKI+ILDEADSMT+AAQAALRRTMEKE+ +TRFCLICNYVS I
Sbjct: 120 AQLTAGGMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHTTRFCLICNYVSRI 179
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+PLTSRC+KFRFKPL E+ ++ RL+YIC++E + L +VE SGGD+RRAITCLQ
Sbjct: 180 IEPLTSRCTKFRFKPLGEDKIVERLEYICKEEDLKASKPVLLKIVEASGGDLRRAITCLQ 239
Query: 241 SCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQ 296
S RLKG G I +D++E+ G++P+ W++ L+ K + E++I+ +LEAY+ +Q
Sbjct: 240 SITRLKGKGTDITVDDIIEIIGIVPDKWLDDLMNVCKTKDYSKAEEFIDQFMLEAYATSQ 299
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
+ +Q + ++ ++ L+DKQK LI ++L ECN RL DG SEYIQ+++L +IKA
Sbjct: 300 VIEQLSERIIYSNELTDKQKTLIADRLGECNYRLLDGGSEYIQLINLCCGIIKA 353
>gi|383860560|ref|XP_003705757.1| PREDICTED: replication factor C subunit 4-like [Megachile
rotundata]
Length = 357
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/354 (59%), Positives = 271/354 (76%), Gaps = 5/354 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGKLG + TS T K P PWVEKYRPKT++DV+EQ EVV VL++C
Sbjct: 1 MQAFLKTGKLGPEGSKKPSTS-RTKEKRSAPPPPWVEKYRPKTVEDVVEQAEVVEVLRQC 59
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
LSG+D P+ LFYGPPGTGKTST++AA QLFG +Y++RILELNASD+RGIQV+RDK+KTF
Sbjct: 60 LSGSDFPNLLFYGPPGTGKTSTILAAARQLFGSLYKDRILELNASDERGIQVVRDKIKTF 119
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TA G DGK CPPFKI+ILDEADSMT AAQAALRRTMEKE+ STRFCLICNYVS I
Sbjct: 120 AQLTAGGMRDDGKRCPPFKIIILDEADSMTAAAQAALRRTMEKESHSTRFCLICNYVSRI 179
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+PLTSRC+KFRFKPL E ++ RL+YI +E + L +VE SGGDMRRAITCLQ
Sbjct: 180 IEPLTSRCTKFRFKPLGEEKIIERLEYISNEEGLKAGKPVLLKIVEASGGDMRRAITCLQ 239
Query: 241 SCARLKGGE-GIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
S RLKG + I +D++E+ G++P+ WI++L++V + E +I+ +LEAY+A+Q
Sbjct: 240 SITRLKGKDIEITIDDIVEIIGIVPDKWIDELMEVCKTKDYSKAEAFIDTFMLEAYAASQ 299
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
+ +Q + ++ ++ +D+QKALI ++L ECN RL DG SEYIQ+++L +IKA
Sbjct: 300 VIEQLSERIIYSNEFTDRQKALIADRLGECNYRLLDGGSEYIQLINLCCGIIKA 353
>gi|350426161|ref|XP_003494352.1| PREDICTED: replication factor C subunit 4-like [Bombus impatiens]
Length = 357
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/354 (58%), Positives = 271/354 (76%), Gaps = 5/354 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGKLG P TS S + PWVEKYRP+T++DV+EQ EVV VL++C
Sbjct: 1 MQAFLKTGKLGPGEPKKVSTSRSKEEHS-GSATPWVEKYRPRTVEDVVEQAEVVEVLRQC 59
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
L+G D P+ LFYGPPGTGKTST++AA QLFG +Y+ER+LELNASD+RGIQV+RDK+K+F
Sbjct: 60 LTGGDFPNLLFYGPPGTGKTSTILAAARQLFGSLYKERLLELNASDERGIQVVRDKIKSF 119
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
AQ TA G DGK CPPFKI+ILDEADSMT+AAQAALRRTMEKE+ STRFCLICNYVS I
Sbjct: 120 AQLTAGGMRDDGKGCPPFKIIILDEADSMTNAAQAALRRTMEKESHSTRFCLICNYVSRI 179
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+PLTSRC+KFRFKPL E+ ++ RL+YIC++E + L +VE SGGD+RRAITCLQ
Sbjct: 180 IEPLTSRCTKFRFKPLGEDKIVERLEYICKEEDLKATKPVLLKIVEASGGDLRRAITCLQ 239
Query: 241 SCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQ 296
S RLKG G I +D++E+ G++P+ W++ L+ K + E++I+ +LEAY+ +Q
Sbjct: 240 SITRLKGKGIDITVDDIIEIIGIVPDKWLDDLMNVCKTKDYSKAEEFIDQFMLEAYATSQ 299
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
+ +Q + ++ ++ L+DKQK LI ++L ECN RL DG SEYIQ+++L +IKA
Sbjct: 300 VIEQLSERIIYSNELTDKQKTLIADRLGECNYRLLDGGSEYIQLINLCCGIIKA 353
>gi|114052591|ref|NP_001040483.1| replication factor C4 [Bombyx mori]
gi|95103078|gb|ABF51480.1| replication factor C4 [Bombyx mori]
Length = 351
Score = 416 bits (1069), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/358 (57%), Positives = 266/358 (74%), Gaps = 13/358 (3%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSG-KTRNK---PVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+TGK+ S+ STSG KT NK P PWVEKYRPKTIDD+++Q EVV V
Sbjct: 1 MQAFLKTGKI------SAGDKASTSGVKTTNKKKPPAPWVEKYRPKTIDDIVDQGEVVQV 54
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK 116
L++CLSG DLPH LFYGPPGTGKTS ++AA QLFGD+ R+R+LELNASD+RGIQV+RDK
Sbjct: 55 LRECLSGGDLPHLLFYGPPGTGKTSAILAAAKQLFGDISRDRVLELNASDERGIQVVRDK 114
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ T SG DG+PCP +K+VILDEADSMT AAQAALRRTME+ET++TRFCLICNY
Sbjct: 115 VKAFAQLTVSGKRADGRPCPSYKLVILDEADSMTTAAQAALRRTMERETRTTRFCLICNY 174
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRA 235
VS II P+TSRCSKFRFKPLA ++ RL+ ICE E+V + + + L V+T GD+RRA
Sbjct: 175 VSRIIPPITSRCSKFRFKPLARENVIKRLREICEAENVDVGEGEILNQAVDTCEGDLRRA 234
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSAT 295
+T LQ C RL G I + ++EVTG++P + + L + ++ LE+++++ ++ AYSA+
Sbjct: 235 LTALQCCQRLYG--RITADGLIEVTGLVPEKLVNEYLSIKNYSELEEFVQNFLMRAYSAS 292
Query: 296 QLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANKT 353
QL +Q V++A L++KQK I EK A C RL DG SE++Q+ DLG +I AN
Sbjct: 293 QLLEQLSATVVAAGHLTNKQKCAISEKTAVCLHRLLDGGSEFMQLTDLGCTLIMANNN 350
>gi|156383785|ref|XP_001633013.1| predicted protein [Nematostella vectensis]
gi|156220077|gb|EDO40950.1| predicted protein [Nematostella vectensis]
Length = 357
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/354 (57%), Positives = 267/354 (75%), Gaps = 8/354 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
ME+FL+ GK A SSSK +G + K PWVEKYRPK +DDV +Q+EVV VLKK
Sbjct: 1 MESFLK-GKTS--ASSSSKVKQGVAGSLGKQKSSPWVEKYRPKCVDDVAQQEEVVMVLKK 57
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
L GADLP+ LFYGPPGTGKTST++A +L+G +M ++R+LELNASD+RGIQVIRDKVK
Sbjct: 58 SLEGADLPNLLFYGPPGTGKTSTILAVARELYGHEMLKQRVLELNASDERGIQVIRDKVK 117
Query: 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
TF+Q +AS DGKPCPPFK+VILDEADSMT +AQAALRRTMEK+TK+TRFCLICNYVS
Sbjct: 118 TFSQLSASASRPDGKPCPPFKLVILDEADSMTPSAQAALRRTMEKQTKTTRFCLICNYVS 177
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
II+PLTSRCSKFRFKPL+ + RL+ IC +E V C+ KA++ +++ S GDMR+AIT
Sbjct: 178 RIIEPLTSRCSKFRFKPLSSEILERRLKEICVKEEVNCEDKAIDEVIKISEGDMRKAITF 237
Query: 239 LQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSAT 295
LQS RLKG GIV ED++E+ G IP+ I+ L + DS+Q LE ++++I E ++A+
Sbjct: 238 LQSAHRLKGDSGIVAEDIIEIAGAIPDNLIKSLFDASRSDSYQKLEGVVKEIIAEGHAAS 297
Query: 296 QLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
QL Q HD ++ L+D QK+ I+EK+A + L DGA EY+Q+L + S++++
Sbjct: 298 QLIGQVHDQIVQMEDLNDHQKSAIMEKIAIVDKCLIDGADEYLQVLSMCSVMMQ 351
>gi|72072160|ref|XP_787339.1| PREDICTED: replication factor C subunit 4-like isoform 2
[Strongylocentrotus purpuratus]
gi|390359382|ref|XP_003729467.1| PREDICTED: replication factor C subunit 4-like isoform 1
[Strongylocentrotus purpuratus]
Length = 355
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/352 (56%), Positives = 265/352 (75%), Gaps = 9/352 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ G A +SS T G T+ + VPWVEKYRP+T+D+V Q EVV+VLKK
Sbjct: 1 MDAFLKGGSFKSKAAASS-----TGGSTKQRQVPWVEKYRPRTVDEVAYQDEVVAVLKKS 55
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +LFG DMYR R+LELNASD+RGIQV+RDKVK
Sbjct: 56 LQGADLPNMLFYGPPGTGKTSTILAASRELFGTDMYRSRVLELNASDERGIQVVRDKVKK 115
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ A G DGKPCPPFKI+ILDEADSMT+ AQAALRRTMEK++K+T+FCLICNY+S
Sbjct: 116 FAQTAAGGIRPDGKPCPPFKIIILDEADSMTYDAQAALRRTMEKQSKNTKFCLICNYISR 175
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPL++ +L+ ICE E++ C +ALE +++ S GDMR++IT L
Sbjct: 176 IIEPLTSRCSKFRFKPLSKPIQGKKLREICEAENINCGEEALEAILKLSEGDMRKSITFL 235
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS RL+ +GI EDV E+ GVIP+ I+ L++ S++ L++ +++L+ YSA+Q
Sbjct: 236 QSVHRLQREDGIRVEDVYEIAGVIPDKMIDDLIQACYGGSYEKLDEKVQELLQGGYSASQ 295
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVI 348
+ +Q DI++ L+DKQK+ I E+LA + RL DGA E +QI+DL ++ +
Sbjct: 296 VVNQIFDIIVDRGELTDKQKSAIAERLAVIDKRLCDGADEGLQIMDLFTLTM 347
>gi|57529590|ref|NP_001006550.1| replication factor C subunit 4 [Gallus gallus]
gi|53136906|emb|CAG32782.1| hypothetical protein RCJMB04_37a17 [Gallus gallus]
Length = 359
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/356 (57%), Positives = 262/356 (73%), Gaps = 7/356 (1%)
Query: 1 MEAFLR-TGKLGKDAPSSSKTSVSTSGKTRNK--PVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ + P++ + S + S NK PVPWVEKYRPK +D+V Q EVV+VL
Sbjct: 1 MQAFLKGPSSISSKPPAAKERSAAGSSGEGNKLKPVPWVEKYRPKNVDEVAFQDEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R+R+LELNASD+RGIQVIR+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ TASG DGK CPPFKIVILDEADSMT AAQ ALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKAFAQLTASGSRADGKVCPPFKIVILDEADSMTSAAQGALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+S II+PLTSRCSKFRFKPL++ RL + E+E+V +A+ LV+ S GD+R+AI
Sbjct: 181 ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ I + V E+ GVIP I+ LL SF+ LE ++LI E Y+
Sbjct: 241 TYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACSSGSFEKLETVAKNLINEGYA 300
Query: 294 ATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
QL +Q HDIV+ + SDKQK++I+EKLAE + L DGA EY+Q++ L ++V++
Sbjct: 301 VAQLVNQLHDIVVESEDFSDKQKSIIVEKLAEVDKCLADGADEYLQLISLCALVMQ 356
>gi|321456941|gb|EFX68037.1| hypothetical protein DAPPUDRAFT_301682 [Daphnia pulex]
Length = 356
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/354 (55%), Positives = 262/354 (74%), Gaps = 4/354 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTS-GKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M++FL+TGKL + S + + + ++ +PWVEKYRP+TID+V Q+EVV+VL+K
Sbjct: 1 MDSFLKTGKLSNQSKGSGVPLLPGNVEEKKHSLIPWVEKYRPRTIDEVSYQEEVVAVLQK 60
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA LFGD+Y++R+LELNASD+RGIQV+R+KVK
Sbjct: 61 SLQGADLPNLLFYGPPGTGKTSTILAAARDLFGDIYKDRVLELNASDERGIQVVREKVKI 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
F+Q+T S DGK CPPFKIVILDEADSMT AAQAALRRTMEKETKSTRFCLICNYVS
Sbjct: 121 FSQRTVSSVRPDGKQCPPFKIVILDEADSMTGAAQAALRRTMEKETKSTRFCLICNYVSR 180
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPL ++ RL++IC E++ C + LE+L+E S GD+RRAIT L
Sbjct: 181 IIEPLTSRCSKFRFKPLPREILVKRLEHICIAENMSCSEEVLESLIEASEGDLRRAITFL 240
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQ 296
QS A L ED+ E+TG +P+ WIE LL+ S+ ++ +I + E +S +Q
Sbjct: 241 QSIANLNSEACPTIEDIYEITGRVPSCWIEGLLEKCTSGSYDAMQSFINNFSAEGFSVSQ 300
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
L +Q H+ ++ ++ LS KQK +I EKLA C+ RL +GA E +Q+LDL ++ +
Sbjct: 301 LLNQLHERIVFSTELSSKQKNVICEKLAICDHRLAEGADEQLQLLDLSCTIMNS 354
>gi|344282143|ref|XP_003412834.1| PREDICTED: replication factor C subunit 4 [Loxodonta africana]
Length = 373
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/358 (56%), Positives = 265/358 (74%), Gaps = 9/358 (2%)
Query: 1 MEAFLRTGKLG-KDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + K A + + +T+G + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGASVSTKPALTKDRGVAATAGSSGENKKAKPVPWVEKYRPKRVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRSRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK+FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKSFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ T RL I E+E+V + + L+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKTQQQRLLDIAEKENVKITNEGIAYLINVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEA 291
AIT LQS RL G+ + + ++++ GVIP I+ + V SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTAGKEVTEKVIMDIAGVIPAETIDGIFAVCQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+ ATQL +QFHD+V+ LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HPATQLVNQFHDVVVENHHLSDKQKSVITEKLAEVDQCLADGADEHLQLISLCATVMQ 358
>gi|395839806|ref|XP_003792767.1| PREDICTED: replication factor C subunit 4 [Otolemur garnettii]
Length = 365
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/359 (56%), Positives = 264/359 (73%), Gaps = 10/359 (2%)
Query: 1 MEAFLRTGKLG------KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVV 54
M+AFL+ + KD + T+ S+ + KPVPWVEKYRPK++D+V Q EVV
Sbjct: 1 MQAFLKGTSISTKPPVTKDHRGVAATAGSSGENKKAKPVPWVEKYRPKSVDEVAFQDEVV 60
Query: 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVI 113
+VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQVI
Sbjct: 61 AVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVI 120
Query: 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
R+KVK FAQ T SG DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLI
Sbjct: 121 REKVKNFAQLTVSGSRSDGKLCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 180
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
CNYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R
Sbjct: 181 CNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLNITEKENVKISSEGIAYLVKVSEGDLR 240
Query: 234 RAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILE 290
+AIT LQS RL GG+ I E + ++ GVIP+ I+ + + SF LE ++DLI+E
Sbjct: 241 KAITFLQSATRLTGGKEITEEVITDIAGVIPSETIDGVFAACQSGSFDKLETVVKDLIIE 300
Query: 291 AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQL +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 GHAATQLVNQLHDVVVENDTLSDKQKSIITEKLAEADKCLADGADEHLQLISLCATVMQ 359
>gi|326926086|ref|XP_003209236.1| PREDICTED: replication factor C subunit 4-like [Meleagris
gallopavo]
Length = 362
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 264/356 (74%), Gaps = 7/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSK--TSVSTSGK-TRNKPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ P ++K ++ +SG+ R KP+PWVEKYRPK +D+V Q EVV+VL
Sbjct: 1 MQAFLKGPSSISTKPPAAKERSAAGSSGEGKRLKPIPWVEKYRPKNVDEVAFQDEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R+R+LELNASD+RGIQVIR+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ TASG DG+ CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKAFAQLTASGSRADGEVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+S II+PLTSRCSKFRFKPL++ RL + E+E+V +A+ LV+ S GD+R+AI
Sbjct: 181 ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVSEKENVKITSEAVSYLVKVSEGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ I + V E+ GVIP I+ LL SF+ LE ++LI E Y+
Sbjct: 241 TYLQSATRLMGGKEITEKTVTEIAGVIPRETIDGLLSACWSGSFEKLETVAKNLISEGYA 300
Query: 294 ATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
QL Q HD+V+ + SDKQK++I+EKLAE + L DGA EY+Q++ L ++V++
Sbjct: 301 VAQLISQLHDLVVESEDFSDKQKSIIVEKLAEVDKCLADGADEYLQLISLCALVMQ 356
>gi|327282022|ref|XP_003225743.1| PREDICTED: replication factor C subunit 4-like [Anolis
carolinensis]
Length = 364
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/359 (55%), Positives = 267/359 (74%), Gaps = 10/359 (2%)
Query: 1 MEAFLR--TGKLGKDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVV 54
M+AFL+ + K P+ K + +T+G + R +P+PWVEKYRPK +D+V Q+EVV
Sbjct: 1 MQAFLKGPSSISTKPLPAKEKGTAATAGGSGEGKRVRPLPWVEKYRPKCMDEVAFQEEVV 60
Query: 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVI 113
+VLKKCL GADLP+ LFYGPPGTGKTST++AA +LFG +++R+R+LELNASD+RGIQVI
Sbjct: 61 AVLKKCLQGADLPNLLFYGPPGTGKTSTILAAARELFGTELFRQRVLELNASDERGIQVI 120
Query: 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
R+KVK FAQ T SG DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLI
Sbjct: 121 REKVKRFAQLTVSGSRSDGKLCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 180
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
CNY+S II+P+TSRCSKFRFKPL++ RL + E+E+V +A+ LV S GD+R
Sbjct: 181 CNYISRIIEPITSRCSKFRFKPLSDKIQRQRLVEVAEKENVAVSSEAISYLVHVSEGDLR 240
Query: 234 RAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILE 290
+AIT LQS RL GG+ + + V E+ GVIP ++ +L + SF+ LE ++LI E
Sbjct: 241 KAITLLQSATRLMGGKEVTEKIVTEIAGVIPREMLDGVLASCQSGSFEKLEAVTKNLIDE 300
Query: 291 AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
Y+ATQL +Q HD+++ LSDKQK++I EKLAE + L DG+ E++Q+ L ++V++
Sbjct: 301 GYAATQLINQLHDVIVEREDLSDKQKSIIAEKLAEVDKCLVDGSDEFLQLTSLCAVVME 359
>gi|57109940|ref|XP_535837.1| PREDICTED: replication factor C subunit 4 [Canis lupus familiaris]
Length = 363
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/357 (56%), Positives = 262/357 (73%), Gaps = 8/357 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+ + P + +T+G + + KPVPWVEKYRPK +D+V Q+EVV+V
Sbjct: 1 MQAFLKGTSVSTKPPLKDRGIAATAGSSGENKKTKPVPWVEKYRPKCVDEVAFQEEVVAV 60
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRD 115
LKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 120
Query: 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICN
Sbjct: 121 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 180
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
YVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+A
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKVSNEGIAYLVKVSEGDLRKA 240
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAY 292
IT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E +
Sbjct: 241 ITFLQSATRLTGGKEITEKVITDIAGVIPAGTIDGIFAACQSGSFDKLEAVVKDLIDEGH 300
Query: 293 SATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+ATQL QFHD+V+ +LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 AATQLVSQFHDVVVENDNLSDKQKSIITEKLAEADKCLADGADEHLQLISLCATVMQ 357
>gi|348582722|ref|XP_003477125.1| PREDICTED: replication factor C subunit 4-like [Cavia porcellus]
Length = 363
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/351 (57%), Positives = 257/351 (73%), Gaps = 8/351 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+ + + + +T+G + + KP+PWVEKYRPK +D+V Q+EVV+V
Sbjct: 1 MQAFLKGTSITTKPSAKDRGVTATAGSSGENKKAKPIPWVEKYRPKCVDEVAFQEEVVAV 60
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRD 115
LKK L GADLP+ LFYGPPGTGKTST++AA +LFG D++R R+LELNASD+RGIQV+R+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRSRVLELNASDERGIQVVRE 120
Query: 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KVK FAQ SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICN
Sbjct: 121 KVKNFAQLAVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKATRFCLICN 180
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
YVS II+PLTSRCSKFRFKPL++ RL I E+E+V + +E LV+ S GD+R+A
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISNEGIEYLVKVSEGDLRKA 240
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAY 292
IT LQS RL GG+ ++ + + ++ GVIP I + K SF LE ++DLI E +
Sbjct: 241 ITFLQSATRLTGGKEVMEKVITDIAGVIPAETIGGIFAACKSGSFDKLEAAVKDLINEGH 300
Query: 293 SATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ATQL Q HD V+ +LSDKQK++I EKLAE + L DGA EY+Q++ L
Sbjct: 301 AATQLVSQLHDAVVENDNLSDKQKSIITEKLAEVDKCLTDGADEYLQLISL 351
>gi|126338206|ref|XP_001370165.1| PREDICTED: replication factor C subunit 4 [Monodelphis domestica]
Length = 366
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/364 (56%), Positives = 264/364 (72%), Gaps = 20/364 (5%)
Query: 1 MEAFLR-----------TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIE 49
M+AFL+ T G AP S ++ R KPVPWVEKYRPK +D+V
Sbjct: 1 MQAFLKGPASISTKPPPTKDRGPSAPQGS-----SAESRRAKPVPWVEKYRPKCVDEVAF 55
Query: 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDR 108
Q+EVV+VLKK L GADLP+ LFYGPPGTGKTST++AA +L+G +++R+R+LELNASD+R
Sbjct: 56 QEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELFRQRVLELNASDER 115
Query: 109 GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKST 168
GIQVIR+KVKTFAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+T
Sbjct: 116 GIQVIREKVKTFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTT 175
Query: 169 RFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETS 228
RFCLICNYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + + LV+ S
Sbjct: 176 RFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQHQRLLDISEKENVKINNEGIAYLVKVS 235
Query: 229 GGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIE 285
GD+R+AIT LQS RL GG+ + + + E+ GV+P I + + SF+ LE ++
Sbjct: 236 EGDLRKAITFLQSATRLTGGQEVTEKVITEIAGVVPTGTITGIFYACQSGSFEKLEALVK 295
Query: 286 DLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGS 345
DLI E ++ATQL +Q HD+V+ L+DKQK++I EKLAE + L DGA E++Q++ L +
Sbjct: 296 DLIDEGHAATQLINQLHDVVVEKDDLTDKQKSIITEKLAEVDKCLADGADEHLQLISLCA 355
Query: 346 IVIK 349
V++
Sbjct: 356 TVMQ 359
>gi|449277649|gb|EMC85743.1| Replication factor C subunit 4 [Columba livia]
Length = 362
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/356 (57%), Positives = 263/356 (73%), Gaps = 7/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKT--SVSTSGK-TRNKPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ P ++K + +SG+ R KP+PWVEKYRPK +D+V Q EVV+VL
Sbjct: 1 MQAFLKGPSSISTRPPAAKEKGAAGSSGEGKRLKPIPWVEKYRPKNVDEVAFQDEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R+R+LELNASD+RGIQVIR+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRQRVLELNASDERGIQVIREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ TASG DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKAFAQLTASGSRSDGKVCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+S II+PLTSRCSKFRFKPL++ RL + E+E V +A+ LV+ S GD+R+AI
Sbjct: 181 ISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDVAEKEHVKISSEAVSYLVKVSEGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ I + V E+ GVIP I++LL V SF+ LE ++LI E Y+
Sbjct: 241 TFLQSATRLMGGKEITEKIVTEIAGVIPKETIDELLSVCQSGSFEKLETLAKNLINEGYA 300
Query: 294 ATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
QL +Q HD V+ + + DK+K+ I+EKLAE + L DGA EY+Q++ L ++V++
Sbjct: 301 VAQLVNQLHDAVVESEAYRDKEKSAIVEKLAEVDKCLVDGADEYLQLMSLCALVMQ 356
>gi|224060747|ref|XP_002196271.1| PREDICTED: replication factor C subunit 4 [Taeniopygia guttata]
Length = 362
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/356 (56%), Positives = 264/356 (74%), Gaps = 7/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSK--TSVSTSGK-TRNKPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ P ++K + +SG+ R KP+PWVEKYRPK +D+V Q EVV+VL
Sbjct: 1 MQAFLKGPASISTKPVAAKEKNAAGSSGEGKRAKPIPWVEKYRPKNVDEVAFQDEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG D++R+R+LELNASD+RGIQVIR+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPDLFRQRVLELNASDERGIQVIREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ TASG DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKAFAQLTASGSRSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+S II+PLTSRCSKFRFKPL+++ RL + E+E V +A+ LV+ S GD+R+AI
Sbjct: 181 ISRIIEPLTSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAISYLVKVSEGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ I + + E+ GVIP I++LL + SF+ LE ++LI E ++
Sbjct: 241 TFLQSATRLMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFA 300
Query: 294 ATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
QL +Q HD ++ + SDKQK+ I+EKLAE + L DGA E++Q++ L ++V++
Sbjct: 301 VAQLVNQLHDTIVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQ 356
>gi|317575745|ref|NP_001187540.1| replication factor C subunit 4 [Ictalurus punctatus]
gi|308323307|gb|ADO28790.1| replication factor c subunit 4 [Ictalurus punctatus]
Length = 358
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/354 (56%), Positives = 262/354 (74%), Gaps = 7/354 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M+AFL+ G P K + S+SG+ R KPVPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGSTQGVK-PQKDKATASSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKK 59
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
L GADLP+ LFYGPPGTGKTST++AA +L+G ++YR+R+LELNASD+RGIQVIR+KVK
Sbjct: 60 SLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVK 119
Query: 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
FAQ T +G DGK CPPFKI+ILDEADSMT AAQAALRRTMEKE+++TRFCLICNYVS
Sbjct: 120 NFAQLTVAGTRTDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVS 179
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
II+PLTSRCSKFRFKPL RL IC +E++ + ++ LV+ S GD+R+AIT
Sbjct: 180 RIIEPLTSRCSKFRFKPLTNEVQQERLLEICAKENLKYSKEGIDALVKVSEGDLRKAITL 239
Query: 239 LQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSAT 295
LQS AR + I V+E+ GV+P IE LL+ +F+ LE +++L+ E Y+AT
Sbjct: 240 LQSTARFSAEKEITESLVIEIAGVVPPKVIENLLQTCYKGNFEKLEVAVKNLVDEGYAAT 299
Query: 296 QLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
Q+ QFHD+++ L DKQK++I EK+A + L DGA EY+Q+L+L S++++
Sbjct: 300 QILSQFHDVIIE-EKLGDKQKSVITEKMAVVDKCLVDGADEYLQLLNLCSVIMQ 352
>gi|440891701|gb|ELR45251.1| Replication factor C subunit 4 [Bos grunniens mutus]
Length = 364
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/358 (55%), Positives = 262/358 (73%), Gaps = 9/358 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ + ++ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGASISTKPPPTKDRGVTATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ + + + ++ GV+P I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEVTEKVITDIAGVVPAKTIDGVFAACQSGSFDKLEAVVKDLINEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQL +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 358
>gi|426217726|ref|XP_004003103.1| PREDICTED: replication factor C subunit 4 isoform 1 [Ovis aries]
Length = 364
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/358 (55%), Positives = 262/358 (73%), Gaps = 9/358 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ + ++ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGASISTKPPPTKDRGVTATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ + + + ++ GV+P I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEVTEKVITDIAGVVPAKTIDGVFAACQSGSFDKLEAVVKDLINEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQL +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HAATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 358
>gi|291400267|ref|XP_002716498.1| PREDICTED: replication factor C 4 [Oryctolagus cuniculus]
Length = 364
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/358 (56%), Positives = 258/358 (72%), Gaps = 9/358 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ P + V+ S + + KPVPWVEKYRPK +D+V Q+EVVS
Sbjct: 1 MQAFLKGTSASTKLPPTKDRGVAASAGSSAETKKAKPVPWVEKYRPKCVDEVAFQEEVVS 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I E+E+V+ + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVIISNEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ + + ++ GVIP I + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEVTENVITDIAGVIPPETINGIFAACQGGSFDKLEGVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQ+ +Q HD+V+ LSDKQK++I EKLAE + L DGA E++Q+L L + V++
Sbjct: 301 HAATQVVNQLHDVVVENDDLSDKQKSIITEKLAEVDKCLADGADEHLQLLSLCATVMQ 358
>gi|301758022|ref|XP_002914857.1| PREDICTED: replication factor C subunit 4-like [Ailuropoda
melanoleuca]
gi|281350719|gb|EFB26303.1| hypothetical protein PANDA_002794 [Ailuropoda melanoleuca]
Length = 363
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/357 (56%), Positives = 262/357 (73%), Gaps = 8/357 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+ + + +T+G + + KPVPWVEKYRPK +D++ Q+EVV+V
Sbjct: 1 MQAFLKGTSVSTKPSLKDRGVAATAGSSGENKKTKPVPWVEKYRPKCVDEIAFQEEVVAV 60
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRD 115
LKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R+
Sbjct: 61 LKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVRE 120
Query: 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICN
Sbjct: 121 KVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICN 180
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
YVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+A
Sbjct: 181 YVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKA 240
Query: 236 ITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAY 292
IT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E +
Sbjct: 241 ITFLQSATRLTGGKEITEKVITDIAGVIPAQTIDGIFAACQSGSFDKLEAVVKDLIDEGH 300
Query: 293 SATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+ATQL +QFHD+V+ +LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 AATQLVNQFHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|308322095|gb|ADO28185.1| replication factor c subunit 4 [Ictalurus furcatus]
Length = 358
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/354 (56%), Positives = 262/354 (74%), Gaps = 7/354 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M+AFL+ G P K + S+SG+ R KPVPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGSTQGVK-PQKDKATASSSGENKRQKPVPWVEKYRPKCVDEVAFQEEVVAVLKK 59
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
L GADLP+ LFYGPPGTGKTST++AA +L+G ++YR+R+LELNASD+RGIQVIR+KVK
Sbjct: 60 SLEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVIREKVK 119
Query: 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
FAQ T +G DGK CPPFKI+ILDEADSMT AAQAALRRTMEKE+++TRFCLICNYVS
Sbjct: 120 NFAQLTVAGTRTDGKSCPPFKIIILDEADSMTGAAQAALRRTMEKESRTTRFCLICNYVS 179
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
II+PLTSRCSKFRFKPL RL IC +E++ + ++ LV+ S GD+R+AIT
Sbjct: 180 RIIEPLTSRCSKFRFKPLTNEVQQERLLEICAKENLKYSKEGIDALVKVSEGDLRKAITL 239
Query: 239 LQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSAT 295
LQS AR + I V+E+ GV+P IE LL+ +F+ LE +++L+ E Y+AT
Sbjct: 240 LQSTARFGAEKEITESLVIEIAGVVPPKVIENLLQTCYKGNFEKLEVAVKNLVDEGYAAT 299
Query: 296 QLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
Q+ QFHD+++ L DKQK++I EK+A + L DGA EY+Q+L+L S++++
Sbjct: 300 QILSQFHDVIIE-EKLGDKQKSVITEKMAVVDKCLVDGADEYLQLLNLCSVIMQ 352
>gi|350591807|ref|XP_003483338.1| PREDICTED: replication factor C subunit 4-like [Sus scrofa]
Length = 364
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/358 (55%), Positives = 262/358 (73%), Gaps = 9/358 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ + ++ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ + + + ++ GVIP I+ +L + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEVTEKMITDIAGVIPTETIDGVLAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQ +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HAATQFVNQLHDVVVENDNLSDKQKSVITEKLAEADKCLADGADEHLQLISLCATVMQ 358
>gi|410970795|ref|XP_003991862.1| PREDICTED: replication factor C subunit 4 [Felis catus]
Length = 362
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/356 (56%), Positives = 259/356 (72%), Gaps = 7/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNK---PVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ + P + + + NK PVPWVEKYRPK +D+V Q+EVV+VL
Sbjct: 1 MQAFLKGTSVSTKPPLKDRVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
VS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+AI
Sbjct: 181 VSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ I + + ++ GVIP I+ L + SF LE +++LI E ++
Sbjct: 241 TFLQSATRLTGGKEITEKVITDIAGVIPAETIDGLFAACQSGSFDKLEGVVKNLIDEGHA 300
Query: 294 ATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
ATQL +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 ATQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 356
>gi|343113485|gb|AEL87701.1| replication factor C 4 [Strongylocentrotus nudus]
Length = 355
Score = 399 bits (1024), Expect = e-108, Method: Compositional matrix adjust.
Identities = 197/352 (55%), Positives = 264/352 (75%), Gaps = 9/352 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ G A +SS T G T+ + VPWVEKYRP+T+D+V Q EVV+VLKK
Sbjct: 1 MDAFLKGGSFKSKAATSS-----TGGSTKQRQVPWVEKYRPRTVDEVAYQDEVVAVLKKS 55
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +LFG DMYR R+LELNASD+RGIQV+RDKVK
Sbjct: 56 LQGADLPNMLFYGPPGTGKTSTILAASRELFGADMYRSRVLELNASDERGIQVVRDKVKK 115
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ A G DGKP PPFKI+ILDEADSMT+ AQAALRRTMEK++K+T+FCLICNY+S
Sbjct: 116 FAQTAAGGIRPDGKPRPPFKIIILDEADSMTNDAQAALRRTMEKQSKNTKFCLICNYISR 175
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPL++ +L+ ICE E++ C +AL+ +++ S GDMR++IT L
Sbjct: 176 IIEPLTSRCSKFRFKPLSKPIQGKKLREICEVENINCGEEALDAILKLSEGDMRKSITFL 235
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS RL+ +GI EDV E+ GVIP+ I+ L++ S++ L++ +++L+ + YSA+Q
Sbjct: 236 QSVHRLQREDGIRVEDVYEIAGVIPDRIIDDLIQSCYGGSYEKLDEKVQELLQDGYSASQ 295
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVI 348
+ +Q DI++ L+D QK+ I E+LA + RL DGA E +QI+DL ++ +
Sbjct: 296 VVNQIFDIIVERGELTDTQKSAIAERLAVIDKRLCDGADEGLQIMDLFTLTM 347
>gi|194222681|ref|XP_001498117.2| PREDICTED: replication factor C subunit 4 [Equus caballus]
Length = 364
Score = 398 bits (1022), Expect = e-108, Method: Compositional matrix adjust.
Identities = 199/358 (55%), Positives = 261/358 (72%), Gaps = 9/358 (2%)
Query: 1 MEAFLRTGKLGKDAP-----SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + T+ S+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGASISAKPPMPKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NY+S II+PLTSRCSKFRFKPL++ RL I +E V + + LV+ S GD+R+
Sbjct: 181 NYISRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKEHVKISNEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ + + + ++ GVIP I+ LL + SF LE +++LI E
Sbjct: 241 AITFLQSATRLTGGKEVTEKVITDIAGVIPAETIDGLLAACQSGSFDKLEAAVKNLIDEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQL +Q HD+++ +LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HAATQLVNQLHDVIVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358
>gi|431838862|gb|ELK00791.1| Replication factor C subunit 4 [Pteropus alecto]
Length = 394
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/358 (56%), Positives = 262/358 (73%), Gaps = 9/358 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS----TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ +SG+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 31 MQAFLKGTSISTKPPLTKDRGVAAIAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 90
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 91 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 150
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 151 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 210
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I +E V + + LV+ S GD+R+
Sbjct: 211 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAGKEHVKISNEGVSYLVKVSEGDLRK 270
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 271 AITFLQSATRLTGGKEITEKVITDIAGVIPAETIDGIFAACQSGSFDKLEAVVKDLIDEG 330
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQL +Q HD+++ +LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 331 HAATQLVNQLHDVIVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 388
>gi|354492255|ref|XP_003508264.1| PREDICTED: replication factor C subunit 4 [Cricetulus griseus]
gi|344245879|gb|EGW01983.1| Replication factor C subunit 4 [Cricetulus griseus]
Length = 362
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/356 (56%), Positives = 262/356 (73%), Gaps = 7/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVST--SGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M+AFL+ + + ++ T SG+T+ KPVPWVEKYRPK +D+V Q+EVV+VL
Sbjct: 1 MQAFLKGTSVSTKPQFTKDRAIPTGSSGETKKVKPVPWVEKYRPKCVDEVAFQEEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R+K
Sbjct: 61 KKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY
Sbjct: 121 VKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
VS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R+AI
Sbjct: 181 VSRIIEPLTSRCSKFRFKPLSDKIQRERLLDIAEKENVKISHEVIAYLVKVSEGDLRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYS 293
T LQS RL GG+ ++ + + ++ GVIP I+ + + SF LE ++DLI E +
Sbjct: 241 TFLQSATRLTGGKEVMRDVITDIAGVIPATTIDGIFTACQSGSFDKLEAVVKDLIDEGQA 300
Query: 294 ATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
A QL +Q HD+V+ LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 AVQLVNQLHDVVVENEDLSDKQKSIITEKLAEVDKCLADGADEHLQLMSLCATVMQ 356
>gi|196003908|ref|XP_002111821.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
gi|190585720|gb|EDV25788.1| hypothetical protein TRIADDRAFT_50137 [Trichoplax adhaerens]
Length = 373
Score = 397 bits (1019), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/339 (57%), Positives = 254/339 (74%), Gaps = 17/339 (5%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
+ N VPWVEKYRP++IDDV Q EVVSVL+KCL GADLP+FLFYGPPGTGKTST++AA
Sbjct: 29 SSNVSVPWVEKYRPRSIDDVAHQDEVVSVLRKCLQGADLPNFLFYGPPGTGKTSTILAAA 88
Query: 88 HQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
L+G D+YR R+LELNASDDRGIQVIR+K+KTFAQ + + DG PCPPFKI+ILDEA
Sbjct: 89 RHLYGSDIYRSRVLELNASDDRGIQVIREKIKTFAQLSVANQRPDGTPCPPFKIIILDEA 148
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMTHAAQAALRRTMEK +K+TRFCLICNYVS II+PLTSRCSKFRFKPL EN +L L
Sbjct: 149 DSMTHAAQAALRRTMEKYSKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLPENILLHHLS 208
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE---VTG-- 261
I E+E++ CD +AL ++ S GDMR+AIT +QS +RL + I +E ++E VTG
Sbjct: 209 AISEKENLDCDKQALRNIISISEGDMRKAITYIQSVSRLYNDKRITSERIIESAGVTGLY 268
Query: 262 --------VIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS 310
VIP+ I+ +L +++S++ L+K I+++I ++YSA QL Q HD ++
Sbjct: 269 FSIASATLVIPDALIDSILETCRLNSYEKLDKIIQNVIADSYSAYQLLSQLHDKIVDVDE 328
Query: 311 LSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
LSDK+K+ + + +AE + L DGA EY+Q++ L S +++
Sbjct: 329 LSDKKKSFLAQMMAEIDKCLMDGADEYLQMMKLCSHIMQ 367
>gi|296224812|ref|XP_002758207.1| PREDICTED: replication factor C subunit 4 [Callithrix jacchus]
Length = 363
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/358 (56%), Positives = 265/358 (74%), Gaps = 10/358 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS----TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + + V+ +SG+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKERGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAERENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ +L + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVLAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQL Q HD+V+ ++L DKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HAATQLVSQLHDVVVE-NNLPDKQKSIITEKLAEADKCLADGADEHLQLISLCATVMQ 357
>gi|355784873|gb|EHH65724.1| hypothetical protein EGM_02550 [Macaca fascicularis]
Length = 363
Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust.
Identities = 202/358 (56%), Positives = 263/358 (73%), Gaps = 10/358 (2%)
Query: 1 MEAFLRTGKLG-KDAPSSSKTSVSTSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + K P+ + +T+G + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKSLPTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITERVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQ Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HAATQFVSQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|4506491|ref|NP_002907.1| replication factor C subunit 4 [Homo sapiens]
gi|31881687|ref|NP_853551.1| replication factor C subunit 4 [Homo sapiens]
gi|1703052|sp|P35249.2|RFC4_HUMAN RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 37 kDa subunit; Short=A1 37 kDa
subunit; AltName: Full=Activator 1 subunit 4; AltName:
Full=Replication factor C 37 kDa subunit; Short=RF-C 37
kDa subunit; Short=RFC37
gi|1498256|gb|AAB09785.1| replication factor C, 37-kDa subunit [Homo sapiens]
gi|16924323|gb|AAH17452.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|18645198|gb|AAH24022.1| Replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|22532479|gb|AAM97933.1| replication factor C (activator 1) 4 (37kD) [Homo sapiens]
gi|30582813|gb|AAP35633.1| replication factor C (activator 1) 4, 37kDa [Homo sapiens]
gi|49168606|emb|CAG38798.1| RFC4 [Homo sapiens]
gi|60819475|gb|AAX36501.1| replication factor C 4 [synthetic construct]
gi|61362396|gb|AAX42213.1| replication factor C [synthetic construct]
gi|61362402|gb|AAX42214.1| replication factor C [synthetic construct]
gi|61363130|gb|AAX42340.1| replication factor C 4 [synthetic construct]
gi|119598575|gb|EAW78169.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|119598576|gb|EAW78170.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_a [Homo
sapiens]
gi|123993605|gb|ABM84404.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123993735|gb|ABM84469.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123994261|gb|ABM84732.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|123999624|gb|ABM87354.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|261860114|dbj|BAI46579.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
Length = 363
Score = 396 bits (1017), Expect = e-108, Method: Compositional matrix adjust.
Identities = 201/358 (56%), Positives = 263/358 (73%), Gaps = 10/358 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ S + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|30584245|gb|AAP36371.1| Homo sapiens replication factor C (activator 1) 4, 37kDa [synthetic
construct]
gi|54697188|gb|AAV38966.1| replication factor C (activator 1) 4, 37kDa [synthetic construct]
gi|60653953|gb|AAX29669.1| replication factor C 4 [synthetic construct]
gi|60654181|gb|AAX29783.1| replication factor C 4 [synthetic construct]
gi|60830868|gb|AAX36948.1| replication factor C 4 [synthetic construct]
gi|61367088|gb|AAX42950.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 201/358 (56%), Positives = 263/358 (73%), Gaps = 10/358 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ S + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|297672721|ref|XP_002814437.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pongo abelii]
gi|297672723|ref|XP_002814438.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pongo abelii]
gi|397470118|ref|XP_003806680.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan paniscus]
gi|397470120|ref|XP_003806681.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan paniscus]
gi|426343233|ref|XP_004038219.1| PREDICTED: replication factor C subunit 4 isoform 1 [Gorilla
gorilla gorilla]
gi|426343235|ref|XP_004038220.1| PREDICTED: replication factor C subunit 4 isoform 2 [Gorilla
gorilla gorilla]
gi|410253804|gb|JAA14869.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 395 bits (1016), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/358 (56%), Positives = 265/358 (74%), Gaps = 10/358 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS----TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ +SG+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|351709587|gb|EHB12506.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 364
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/359 (55%), Positives = 265/359 (73%), Gaps = 11/359 (3%)
Query: 1 MEAFLRTGKLGKDAPSSSK-----TSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVV 54
M+AFL+ G P S+K + +SG+ + KPVPWVEKYRPK +D+V Q+EVV
Sbjct: 1 MQAFLK-GTSISTKPLSTKDQGITATAGSSGENKKVKPVPWVEKYRPKCVDEVAFQEEVV 59
Query: 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVI 113
+VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+
Sbjct: 60 AVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRSRVLELNASDERGIQVV 119
Query: 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
R+KVK FAQ SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLI
Sbjct: 120 REKVKNFAQLAVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLI 179
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
CNYV+ II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R
Sbjct: 180 CNYVTRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISNEGIAYLVKVSEGDLR 239
Query: 234 RAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILE 290
+AIT LQS RL GG+ ++ + + ++ GVIP I+ + + SF LE +++LI E
Sbjct: 240 KAITFLQSATRLTGGKEVMEKVITDIAGVIPAETIDGVFAACQSGSFDKLEAVVKNLINE 299
Query: 291 AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQL +Q HD ++ +LSDKQK+++ EKLAE + L DGA E++Q++ L +IV++
Sbjct: 300 GHAATQLINQVHDAIVENDNLSDKQKSIMTEKLAEADKCLADGADEHLQLISLCAIVMQ 358
>gi|332818666|ref|XP_003310208.1| PREDICTED: replication factor C subunit 4 isoform 1 [Pan
troglodytes]
gi|332818668|ref|XP_003310209.1| PREDICTED: replication factor C subunit 4 isoform 2 [Pan
troglodytes]
gi|410223264|gb|JAA08851.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410291994|gb|JAA24597.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
gi|410332695|gb|JAA35294.1| replication factor C (activator 1) 4, 37kDa [Pan troglodytes]
Length = 363
Score = 395 bits (1014), Expect = e-107, Method: Compositional matrix adjust.
Identities = 202/358 (56%), Positives = 265/358 (74%), Gaps = 10/358 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS----TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ +SG+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HAATQLVNQVHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|52317098|ref|NP_999902.2| replication factor C subunit 4 [Danio rerio]
gi|49619077|gb|AAT68123.1| replication factor C subunit RFC4 [Danio rerio]
Length = 358
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/353 (54%), Positives = 260/353 (73%), Gaps = 5/353 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ +S S+ G+ + + VPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGSSSQSVKAQKPSSSSSSGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKS 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +L+G D+YR+R+LELNASD+RGIQV+R+KVK
Sbjct: 61 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKR 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T +G DGK CPPFKI+ILDEADSMT AAQAALRRTMEKE+++TRFCLICNYVS
Sbjct: 121 FAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSR 180
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPLA + R+ IC +E++ + ++ LV S GD+R+AIT L
Sbjct: 181 IIEPLTSRCSKFRFKPLANDVQQERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFL 240
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS ARL I + ++E+ GV+P I+ LL + +F+ LE ++D+I + Y+AT
Sbjct: 241 QSGARLNSEREITEQTIIEIAGVVPPKVIQSLLHICYKGTFEKLEVAVKDMIDQGYAATN 300
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
L +Q HD+++ LSDKQK++I EK+AE + L DGA EY+Q+L L S++++
Sbjct: 301 LLNQLHDVIIE-EQLSDKQKSVITEKMAEVDKCLADGADEYLQLLSLCSVIMQ 352
>gi|61367093|gb|AAX42951.1| replication factor C 4 [synthetic construct]
Length = 364
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 200/358 (55%), Positives = 262/358 (73%), Gaps = 10/358 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ S + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKF FKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFSFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|332215081|ref|XP_003256668.1| PREDICTED: replication factor C subunit 4 isoform 1 [Nomascus
leucogenys]
Length = 363
Score = 393 bits (1009), Expect = e-107, Method: Compositional matrix adjust.
Identities = 204/360 (56%), Positives = 266/360 (73%), Gaps = 14/360 (3%)
Query: 1 MEAFLRTGK------LGKDAPSSSKTSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEV 53
M+AFL+ L KD ++ + +SG+ R KPVPWVEKYRPK +D+V Q+EV
Sbjct: 1 MQAFLKGTSISTKPLLTKDRGVAA--TAGSSGENRKAKPVPWVEKYRPKCVDEVAFQEEV 58
Query: 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQV 112
V+VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV
Sbjct: 59 VAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQV 118
Query: 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
+R+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCL
Sbjct: 119 VREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL 178
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
ICNYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+
Sbjct: 179 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDL 238
Query: 233 RRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLIL 289
R+AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI
Sbjct: 239 RKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLID 298
Query: 290 EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
E ++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 299 EGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|388454302|ref|NP_001253606.1| replication factor C subunit 4 [Macaca mulatta]
gi|355560107|gb|EHH16835.1| hypothetical protein EGK_12194 [Macaca mulatta]
gi|380815324|gb|AFE79536.1| replication factor C subunit 4 [Macaca mulatta]
gi|383420509|gb|AFH33468.1| replication factor C subunit 4 [Macaca mulatta]
Length = 363
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 202/358 (56%), Positives = 260/358 (72%), Gaps = 10/358 (2%)
Query: 1 MEAFLR-----TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ T L + T+ S+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKSLLTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITERVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQ Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HAATQFVSQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>gi|21703948|ref|NP_663455.1| replication factor C subunit 4 [Mus musculus]
gi|81916548|sp|Q99J62.1|RFC4_MOUSE RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|13097123|gb|AAH03335.1| Replication factor C (activator 1) 4 [Mus musculus]
gi|74147363|dbj|BAE27563.1| unnamed protein product [Mus musculus]
gi|148665244|gb|EDK97660.1| replication factor C (activator 1) 4 [Mus musculus]
Length = 364
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 200/360 (55%), Positives = 262/360 (72%), Gaps = 13/360 (3%)
Query: 1 MEAFLR------TGKLGKDAPSSSKTSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEV 53
M+AFL+ +L KD + + +SG+T+ KPVPWVEKYRPK +D+V Q EV
Sbjct: 1 MQAFLKGTSVSAKAQLTKD--RGTPATAGSSGETKKVKPVPWVEKYRPKCVDEVAFQDEV 58
Query: 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQV 112
V+VL+K L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV
Sbjct: 59 VAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQV 118
Query: 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
+R+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCL
Sbjct: 119 VREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL 178
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
ICNYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+
Sbjct: 179 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDL 238
Query: 233 RRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLIL 289
R+AIT LQS RL GG+ + + + ++ GVIP I+ + SF LE +++LI
Sbjct: 239 RKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLID 298
Query: 290 EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
E ++ATQL +Q HD ++ +LSDK K++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 299 EGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358
>gi|348513512|ref|XP_003444286.1| PREDICTED: replication factor C subunit 4-like [Oreochromis
niloticus]
Length = 357
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 195/353 (55%), Positives = 257/353 (72%), Gaps = 5/353 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ + P K V S + + K VPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGATVQAARPQKDKAVVGPSAEKKAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKS 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +L+G ++YR+R+LELNASD+RGIQV+RDKVK
Sbjct: 61 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVRDKVKN 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T +G DGK CPPFKI+ILDEADSMT AQAALRRTMEKE+++TRFCLICNY+S
Sbjct: 121 FAQLTVAGTRPDGKSCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISR 180
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPLA RL ICE+E++ +++ LV S GD+R+AIT L
Sbjct: 181 IIEPLTSRCSKFRFKPLANQIQEERLLEICEKENLKYTKESIAALVRVSEGDLRKAITFL 240
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS ARL + I + V+E+ GV+P+ I+ LL++ +F+ LE + +++ E Y+ATQ
Sbjct: 241 QSAARLNVDKEITDCAVIEIAGVVPDKMIDNLLQICFRGTFEKLEVAVRNMVDEGYAATQ 300
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+ Q H+ V+ LSDKQK+ I EK+A L DGA EY+Q+L L S++++
Sbjct: 301 ILTQLHECVIE-QDLSDKQKSTITEKMAVVCKCLSDGADEYLQLLSLCSVIMQ 352
>gi|213512735|ref|NP_001134241.1| replication factor C subunit 4 [Salmo salar]
gi|209731766|gb|ACI66752.1| Replication factor C subunit 4 [Salmo salar]
Length = 355
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 193/353 (54%), Positives = 260/353 (73%), Gaps = 6/353 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ P K + TSG+ + K VPWVEKYRPK +++V Q+EVV+VLKK
Sbjct: 1 MQAFLKGTSTQGTRPLKEKGT-GTSGEKKQKSVPWVEKYRPKCMEEVAFQEEVVAVLKKT 59
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
+ GADLP+ LFYGPPGTGKTST++AA +L+G ++YR+R+LELNASD+RGIQV+R+KVK
Sbjct: 60 IEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKR 119
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T +G DGKPCPPFKI+ILDEADSMT+AAQAALRRTMEKE+++TRFCLICNY+S
Sbjct: 120 FAQLTVAGHRTDGKPCPPFKIIILDEADSMTNAAQAALRRTMEKESRTTRFCLICNYISR 179
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPLA RL IC++E++ + + LV+ S GD+R+AIT L
Sbjct: 180 IIEPLTSRCSKFRFKPLANQVQEERLLDICDKENLKYSKEGIAALVKVSEGDLRKAITFL 239
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS ARL I V+E+ GV+P I+ LLK+ +F+ LE + +++ E Y+ATQ
Sbjct: 240 QSAARLNTDNEITESAVIEIAGVVPPKMIDNLLKICYKGTFEKLEIAVRNMVDEGYAATQ 299
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+ +Q H+ ++ L+DKQK+ I EK+A + L DGA EY+Q+L L S++++
Sbjct: 300 IINQLHEAIIE-EELNDKQKSAITEKMAVVDKCLVDGADEYLQMLSLCSVIMQ 351
>gi|157786766|ref|NP_001099339.1| replication factor C subunit 4 [Rattus norvegicus]
gi|149019930|gb|EDL78078.1| replication factor C (activator 1) 4 (predicted), isoform CRA_a
[Rattus norvegicus]
gi|195540022|gb|AAI68166.1| Rfc4 protein [Rattus norvegicus]
Length = 364
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 194/323 (60%), Positives = 246/323 (76%), Gaps = 4/323 (1%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
KPVPWVEKYRPK +D+V Q+EVV+VLKK L GADLP+ LFYGPPGTGKTST++AA +L
Sbjct: 36 KPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAAREL 95
Query: 91 FG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
FG +++R R+LELNASD+RGIQV+R+KVK FAQ T SG DGKPCPPFKIVILDEADSM
Sbjct: 96 FGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSM 155
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQAALRRTMEKE+K+TRFCLICNYVS II+PLTSRCSKFRFKPL++ RL I
Sbjct: 156 TSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIA 215
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIE 269
E+E+V + + LV S GD+R+AIT LQS RL GG+ I + + ++ GVIP IE
Sbjct: 216 EKENVKIGDEEIAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIAGVIPAATIE 275
Query: 270 KLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
++ SF LE +++LI E ++ATQL +Q HD ++ +LSDKQK++I EKLAE
Sbjct: 276 GIVTACHSGSFDKLEAVLKNLIDEGHAATQLVNQLHDSIIEDENLSDKQKSIITEKLAEV 335
Query: 327 NARLQDGASEYIQILDLGSIVIK 349
+ L DGA E++Q++ L + V++
Sbjct: 336 DKCLADGADEHLQLMSLCATVMQ 358
>gi|332021958|gb|EGI62288.1| Replication factor C subunit 4 [Acromyrmex echinatior]
Length = 356
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/356 (52%), Positives = 257/356 (72%), Gaps = 4/356 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M AFL+TGKLG A K S S + + PWVEKYRPK ++D++EQ EVV+V+++
Sbjct: 1 MHAFLKTGKLGAPAAEVKKPSTSQAKDNKKDLTPWVEKYRPKNVNDIVEQTEVVNVIRQA 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ D P+ LFYGPPGTGKTS + AA Q+FG MY++RILELNASDDRGIQV+R+K+K+F
Sbjct: 61 MEHGDFPNMLFYGPPGTGKTSIIHAAARQMFGSMYKDRILELNASDDRGIQVVREKIKSF 120
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
A + A+ DGK CPPFKI+ILDEADSMT AAQ ALRR MEKE+ STRFCL+CNY+S I
Sbjct: 121 ALRRANPNGPDGKKCPPFKIIILDEADSMTGAAQTALRRIMEKESHSTRFCLVCNYLSRI 180
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+P+ SRC+KFRFKPL++ + RL+YIC +E++ D LE +VE SGGD+R+A+ CLQ
Sbjct: 181 IKPIASRCTKFRFKPLSDEKSIARLEYICNEENLKADKSVLEKIVEASGGDLRQAVMCLQ 240
Query: 241 SCARLKGGE-GIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQ 296
S RLKG + I +D L+V G+IP+ I L K ++ ++K +E+L+LE Y +
Sbjct: 241 SITRLKGKDYEITADDALDVIGLIPDEQINILWEACKKGNYINVQKSLENLLLEGYPGAK 300
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+ +Q ++ ++ + L+DKQKA+I + L EC+ RL +G+ EYIQ+L++ S + A K
Sbjct: 301 VIEQLNERIIFSDELTDKQKAIIGDVLGECDFRLTEGSDEYIQLLNVFSTTLMACK 356
>gi|432853216|ref|XP_004067597.1| PREDICTED: replication factor C subunit 4-like [Oryzias latipes]
Length = 355
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 194/353 (54%), Positives = 259/353 (73%), Gaps = 7/353 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ +GK P K S + K VPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGAGVGK--PLKDKGPAGPSADKKPKTVPWVEKYRPKCVDEVAFQEEVVAVLKKS 58
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +L+G ++YR+R+LELNASD+RGIQV+R+KVKT
Sbjct: 59 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPELYRQRVLELNASDERGIQVVREKVKT 118
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T +G DGK CPPFKI+ILDEADSMT AQAALRRTMEKE+++TRFCLICNY+S
Sbjct: 119 FAQLTVAGTRPDGKLCPPFKIIILDEADSMTAPAQAALRRTMEKESRTTRFCLICNYISR 178
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPLA RL ICE+E++ +++E LV+ S GD+R+AIT L
Sbjct: 179 IIEPLTSRCSKFRFKPLANRIQEERLLEICEKENLKYTRESIEALVQVSEGDLRKAITFL 238
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
Q ARL + I + ++E+ GV+P+ IE LL+ +F+ LE + +L+ + Y+ATQ
Sbjct: 239 QCAARLNMDKEITDRAIVEIAGVVPSKMIEGLLQTCFKGTFERLEVTVRNLVNDGYAATQ 298
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+ Q H+ ++ S L DK K++I EK+A + L DGA EY+Q+L L S++++
Sbjct: 299 ILSQLHESIIE-SDLKDKDKSIITEKMAVVSKCLSDGADEYLQMLSLCSVIMQ 350
>gi|47214930|emb|CAG01152.1| unnamed protein product [Tetraodon nigroviridis]
Length = 357
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/353 (54%), Positives = 253/353 (71%), Gaps = 5/353 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ + K +S + + K VPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGATVQTTKLQKEKAGAGSSSEKKAKAVPWVEKYRPKCVDEVAFQEEVVAVLKKS 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +L+G +YR+R+LELNASD+RGIQVIR+KVKT
Sbjct: 61 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPVLYRQRVLELNASDERGIQVIREKVKT 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T +G DGKPCPPFKI+ILDEADSMT AQAALRRTMEKE+++TRFCLICNY+S
Sbjct: 121 FAQLTVAGTRPDGKPCPPFKIIILDEADSMTPPAQAALRRTMEKESRTTRFCLICNYISR 180
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPL RL ICE+E++ +++ LV S GD+R+AIT L
Sbjct: 181 IIEPLTSRCSKFRFKPLDNQVQEERLLAICEKENLKYSGESVSALVRVSEGDLRKAITFL 240
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS ARL + I + E+ GV+P+ I+ LL + +F+ LE + +L+ E Y+ATQ
Sbjct: 241 QSAARLSVDKEISERTITEIAGVVPHKMIDSLLHICFRGTFEKLEVEVRNLVDEGYAATQ 300
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+ Q H+ ++ L DKQK+ I EK+A + L DGA EY+Q+L L S++++
Sbjct: 301 ILSQLHESIIE-KDLGDKQKSAITEKMAVVSKCLSDGADEYLQMLSLCSVIMQ 352
>gi|195345297|ref|XP_002039206.1| GM22851 [Drosophila sechellia]
gi|194134432|gb|EDW55948.1| GM22851 [Drosophila sechellia]
Length = 326
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 190/356 (53%), Positives = 246/356 (69%), Gaps = 34/356 (9%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+TGK + S R P PWVEKYRP+ +DDV+EQ EVV+VL+KC
Sbjct: 1 MQAFLKTGK---STAGTGDKSQGAPAARRKLPAPWVEKYRPRNVDDVVEQSEVVAVLRKC 57
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ G DLP+ L YGPPGTGKTST++AA Q+FGDM+++RILELNASD+RGI V+R K+K F
Sbjct: 58 VEGGDLPNMLLYGPPGTGKTSTILAASRQIFGDMFKDRILELNASDERGINVVRTKIKNF 117
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q +AS DGKPCPPFKI+ILDEADSMTHAAQ+ALRRTMEKE++STRFCLICNYVS I
Sbjct: 118 SQISASSVRPDGKPCPPFKIIILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRI 177
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I P+TSRCSKFRFK L E+ ++ RL+YICE E
Sbjct: 178 IVPITSRCSKFRFKALGEDKVIDRLKYICEMEG--------------------------- 210
Query: 241 SCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
SC RLKG E ++N D+ E++GVIP ++E L++ ++Q LE+++ ++ AYS Q
Sbjct: 211 SCYRLKGPEHVINTADLFEMSGVIPEYYLEDYLEICRSGNYQRLEQFVREIGFSAYSVGQ 270
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+ +QF + ++ L+D QKA I +KL EC RLQDG SEY+QI+DLG +I A K
Sbjct: 271 MMEQFVEFIVDHPGLNDPQKATICDKLGECCFRLQDGGSEYLQIMDLGCCIILALK 326
>gi|443723218|gb|ELU11749.1| hypothetical protein CAPTEDRAFT_223108 [Capitella teleta]
Length = 343
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 194/355 (54%), Positives = 252/355 (70%), Gaps = 26/355 (7%)
Query: 1 MEAFLRTGKLG----KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSV 56
M+AFL+ GK+ K PS SKT S + + PWVEKYRPK +D+V Q+EVV+V
Sbjct: 1 MDAFLKGGKINAPEKKSQPSDSKTKKSKALE------PWVEKYRPKNVDEVAYQEEVVAV 54
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK 116
L+K + G DLP+ L YGPPGTGKTST++AA LFGDMYR RILELN+SD+RGI V+RDK
Sbjct: 55 LRKAIEGLDLPNMLLYGPPGTGKTSTILAAAKGLFGDMYRSRILELNSSDERGISVVRDK 114
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VKTF+Q +A G DGKPCPPFKIVILDEADSMT+AAQ+ALRRTMEKE+K+TRFCLICNY
Sbjct: 115 VKTFSQLSAGGKRPDGKPCPPFKIVILDEADSMTNAAQSALRRTMEKESKTTRFCLICNY 174
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
VS II+P+ + + RL+ IC +E V C +ALE L+ TS GDMR+AI
Sbjct: 175 VSRIIEPIA-------------DILQRRLKEICAKEDVSCSDEALEALMYTSEGDMRKAI 221
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYS 293
T LQS +R K GE I D+ E++GVIPN I+ ++ + S++ LE I+D+I E ++
Sbjct: 222 TTLQSASRFKAGEEITKNDIYEISGVIPNDIIDGIIVICHSGSYEQLESTIKDVIAEGHA 281
Query: 294 ATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVI 348
ATQ+ Q H ++ LSD QK++I EKLA + RL DGA E++QI+DL S+++
Sbjct: 282 ATQVILQLHRSLIDNDRLSDAQKSVIFEKLAIVDKRLMDGADEFLQIMDLCSLIM 336
>gi|114052583|ref|NP_001039359.1| replication factor C subunit 4 [Bos taurus]
gi|88954368|gb|AAI14042.1| Replication factor C (activator 1) 4, 37kDa [Bos taurus]
gi|296491286|tpg|DAA33349.1| TPA: replication factor C 4 [Bos taurus]
Length = 337
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/355 (53%), Positives = 249/355 (70%), Gaps = 30/355 (8%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ + ++ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGASISTKPPPTKDRGVTATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVQVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSA 294
AIT LQS RL GG+ + + + ++ G DLI E ++A
Sbjct: 241 AITFLQSATRLTGGKEVTEKVITDIAG------------------------DLINEGHAA 276
Query: 295 TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
TQL +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 277 TQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 331
>gi|410930528|ref|XP_003978650.1| PREDICTED: replication factor C subunit 4-like [Takifugu rubripes]
Length = 357
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/353 (53%), Positives = 251/353 (71%), Gaps = 5/353 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ + K +S + K VPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGATVQAPKAQKEKALAGSSTEKTVKAVPWVEKYRPKCVDEVAFQEEVVAVLKKS 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +L+G +YR+R+LELNASD+RGIQVIR+KVKT
Sbjct: 61 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPVLYRQRVLELNASDERGIQVIREKVKT 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ T +G DGK CPPFKI+ILDEADSMT AQAALRRTMEKE+++TRFCLICNY+S
Sbjct: 121 FAQLTVAGTRPDGKLCPPFKIIILDEADSMTPPAQAALRRTMEKESRTTRFCLICNYISR 180
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PLTSRCSKFRFKPL + TRL ICE+E++ + + LV S GD+R+AIT L
Sbjct: 181 IIEPLTSRCSKFRFKPLDNHIQETRLLDICEKENLKYSKEGISALVRVSEGDLRKAITFL 240
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296
QS ARL + I + E+ GV+PN I+ LL + +F+ LE + +L+ E Y+ATQ
Sbjct: 241 QSAARLSIAKEITEHTITEIAGVVPNKMIDNLLHICFRGTFEKLEVAVRNLVDEGYAATQ 300
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+ Q H+ ++ DKQK+ I EK+A + + DGA E++Q+L L S++++
Sbjct: 301 ILSQLHESIIE-KDFGDKQKSAIAEKMAVVSKCMLDGADEFLQMLSLCSVIMQ 352
>gi|426217728|ref|XP_004003104.1| PREDICTED: replication factor C subunit 4 isoform 2 [Ovis aries]
Length = 337
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 191/355 (53%), Positives = 249/355 (70%), Gaps = 30/355 (8%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ + ++ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGASISTKPPPTKDRGVTATARSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSA 294
AIT LQS RL GG+ + + + ++ G DLI E ++A
Sbjct: 241 AITFLQSATRLTGGKEVTEKVITDIAG------------------------DLINEGHAA 276
Query: 295 TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
TQL +Q HD+V+ +LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 277 TQLVNQLHDVVVENDNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 331
>gi|432099509|gb|ELK28652.1| Replication factor C subunit 4 [Myotis davidii]
Length = 427
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/391 (50%), Positives = 264/391 (67%), Gaps = 42/391 (10%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS----TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ +SG+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 31 MQAFLKGTSISTKPPLTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 90
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 91 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGHELFRLRVLELNASDERGIQVVR 150
Query: 115 DKVKTFAQQTASGFNQD---------------------------------GKPCPPFKIV 141
+KVK FAQ T SG + GKPCPPFKIV
Sbjct: 151 EKVKNFAQLTVSGSRSECIIQEPQLPSHCNLAAPTLSFCPLVIIVRQSYGGKPCPPFKIV 210
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEADSMT AAQAALRRTMEKE+K+TRFCLICNYVS II+PLTSRCSKFRFKPL++
Sbjct: 211 ILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQ 270
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RL I ++E V + L LV+ S GD+R+AIT LQS RL GG+ + ++ + ++ G
Sbjct: 271 QQRLLDIADKEHVKISNEGLSCLVQVSEGDLRKAITFLQSATRLTGGKEVTDKVITDIAG 330
Query: 262 VIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
VIP ++ + + SF LE ++DLI E ++ATQL +Q HD+V+ +LSDKQK++
Sbjct: 331 VIPVETVDGVFAACQSGSFDKLEAVVKDLIDEGHAATQLVNQLHDVVVENDALSDKQKSI 390
Query: 319 ILEKLAECNARLQDGASEYIQILDLGSIVIK 349
I EKLA+ + L DGA E++Q++ L + V++
Sbjct: 391 ITEKLADVDKCLADGADEHLQLISLCATVMQ 421
>gi|307178287|gb|EFN67059.1| Replication factor C subunit 4 [Camponotus floridanus]
Length = 357
Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust.
Identities = 188/359 (52%), Positives = 260/359 (72%), Gaps = 7/359 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPV-PWVEKYRPKTIDDVIEQQEVVSVLKK 59
M AFL+TGKLG AP+ K ++ K K + PWVEKYRPK +DD++EQ EVV+V+++
Sbjct: 1 MHAFLKTGKLG--APTDVKKPSTSRAKDDKKDLTPWVEKYRPKNVDDIVEQTEVVNVIRQ 58
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
+ D P+ LFYGPPGTGKTS + AA Q+FG MY++RILELNASDDRGIQV+R+K+K+
Sbjct: 59 AMKHGDFPNMLFYGPPGTGKTSIIHAAARQMFGSMYKDRILELNASDDRGIQVVREKIKS 118
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FA + A+ DGK CPPFKI+ILDEADSMT AAQ ALRR MEKE STRFCL+CNY+S
Sbjct: 119 FALRKANPIGPDGKKCPPFKIIILDEADSMTGAAQTALRRIMEKEAHSTRFCLVCNYLSR 178
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+P+ SRC+KFRFKPL++ ++RL+YIC +E++ D LE +VE SGGD+R+A+ CL
Sbjct: 179 IIKPIASRCTKFRFKPLSDEKSISRLEYICNEENLKADRSVLEKIVEASGGDLRQAVMCL 238
Query: 240 QSCARLKGGE-GIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSAT 295
QS RLKG I +D L+V G+IP+ I L K ++ +E +E+L+LE Y +
Sbjct: 239 QSITRLKGKNYEITVDDALDVIGLIPDEKINALWEACKKGNYSNVETLLENLLLEGYPGS 298
Query: 296 QLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
Q+ +Q ++ V+ + LSDKQK +I + L EC+ +L +G+ EY+Q+L + S ++ A K++
Sbjct: 299 QVIEQLNEKVIFSDELSDKQKVIIGDMLGECDYKLTEGSDEYLQLLSIFSTILIAWKSS 357
>gi|74150977|dbj|BAE27622.1| unnamed protein product [Mus musculus]
Length = 370
Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/335 (57%), Positives = 245/335 (73%), Gaps = 13/335 (3%)
Query: 1 MEAFLR------TGKLGKDAPSSSKTSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEV 53
M+AFL+ +L KD + + +SG+T+ KPVPWVEKYRPK +D+V Q EV
Sbjct: 1 MQAFLKGTSVSAKAQLTKD--RGTPATAGSSGETKKVKPVPWVEKYRPKCVDEVAFQDEV 58
Query: 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQV 112
V+VL+K L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV
Sbjct: 59 VAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQV 118
Query: 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
+R+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCL
Sbjct: 119 VREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL 178
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
ICNYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+
Sbjct: 179 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDL 238
Query: 233 RRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLIL 289
R+AIT LQS RL GG+ + + + ++ GVIP I+ + SF LE +++LI
Sbjct: 239 RKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLID 298
Query: 290 EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
E ++ATQL +Q HD ++ +LSDK K++I EKLA
Sbjct: 299 EGHAATQLVNQLHDAIIENENLSDKHKSIITEKLA 333
>gi|198429463|ref|XP_002129985.1| PREDICTED: similar to predicted protein [Ciona intestinalis]
Length = 356
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 183/351 (52%), Positives = 251/351 (71%), Gaps = 5/351 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ G S+SK + + PWVEKYRPK +DDV Q EVV+VL+K
Sbjct: 1 MQAFLKGGASSSKGASTSKAQLQKQEEALASK-PWVEKYRPKCVDDVAHQDEVVAVLRKS 59
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L+GADLP+ LFYGPPGTGKTST++A +LFG + +ER+LELN+SD+RGI VIR+KVK
Sbjct: 60 LTGADLPNLLFYGPPGTGKTSTILALSRELFGFQLMKERVLELNSSDERGINVIREKVKN 119
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ TA+ +DGK CPP+KI+ILDEADSMT AAQ ALRRTMEK +K+TRFCLICNYV+
Sbjct: 120 FAQLTANSLREDGKKCPPYKIIILDEADSMTKAAQEALRRTMEKSSKTTRFCLICNYVTR 179
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II P+ SRCS+FRFK L+ RL +CE+E V A+ LV+ S GD+R+A+T L
Sbjct: 180 IIPPIISRCSQFRFKSLSTEDQKKRLWMVCEKEGVKISQDAMSCLVKCSEGDLRKAMTYL 239
Query: 240 QSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQ 296
Q+ RLKG EGI +DVLE+TGV+P+ I+ L++ +S +++ ++ +I E +SA +
Sbjct: 240 QTAHRLKGAEGIDEKDVLEITGVVPDDIIKSLIRSCASNSHDKVQESVDYIISEGHSAAK 299
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
+ Q HD V++ SSL+D QK++++EK+A + L DGA EY+Q++ L + +
Sbjct: 300 IISQLHDEVLTLSSLNDLQKSVVMEKIAIVDKCLSDGADEYLQLMALATTL 350
>gi|403270485|ref|XP_003927208.1| PREDICTED: uncharacterized protein LOC101046302 [Saimiri
boliviensis boliviensis]
Length = 766
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 187/314 (59%), Positives = 239/314 (76%), Gaps = 5/314 (1%)
Query: 40 RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRER 98
RPK +D+V Q+EVV+VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R
Sbjct: 448 RPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLR 507
Query: 99 ILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALR 158
+LELNASD+RGIQV+R+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALR
Sbjct: 508 VLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALR 567
Query: 159 RTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDF 218
RTMEKE+K+TRFCLICNYVS II+PLTSRCSKFRFKPL++ RL I E+E+V
Sbjct: 568 RTMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISD 627
Query: 219 KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVD 275
+ + LV+ S GD+R+AIT LQS RL GG+ I + + ++ GVIP I + +
Sbjct: 628 EGIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVIPAEKINGVFAACQSG 687
Query: 276 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 335
SF LE ++DLI E ++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA
Sbjct: 688 SFDKLEAVVKDLIDEGHAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGAD 746
Query: 336 EYIQILDLGSIVIK 349
EY+Q++ L + V++
Sbjct: 747 EYLQLISLCATVMQ 760
>gi|328794001|ref|XP_003251959.1| PREDICTED: replication factor C subunit 4-like, partial [Apis
mellifera]
Length = 303
Score = 367 bits (943), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 177/295 (60%), Positives = 235/295 (79%), Gaps = 4/295 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPK ++DV+EQ EVV VL++CL G D P+ LFYGPPGTGKTST++AA QLFG
Sbjct: 6 PWVEKYRPKNVEDVVEQTEVVEVLRQCLKGGDFPNLLFYGPPGTGKTSTILAAARQLFGS 65
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+Y+ER+LELNASD+RGIQV+R+K+K+FAQ TA G DGK CPPFKI++LDEADSMT AA
Sbjct: 66 LYKERVLELNASDERGIQVVREKIKSFAQLTAGGMRDDGKSCPPFKIIVLDEADSMTGAA 125
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
QAALRRTMEKE+ STRFCLICNYVS II+PLTSRC+KFRFKPL EN ++ RL+YIC++E
Sbjct: 126 QAALRRTMEKESHSTRFCLICNYVSRIIEPLTSRCTKFRFKPLGENKIIERLEYICKEED 185
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE-GIVNEDVLEVTGVIPNPWIEKLL 272
+ + L +VE SGGD+RRAITCLQS +LKG + I +DVLE+ G++P+ W+++L+
Sbjct: 186 LKVEKPVLLKIVEVSGGDLRRAITCLQSITKLKGKDIEITVDDVLEIIGIVPDKWLDELI 245
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
K + E++++ +LEAY+ +Q+ +Q + ++ ++ L+DKQKALI +KL
Sbjct: 246 DVCKTKDYSKAEEFVDQFMLEAYATSQVIEQLSERIIYSNELTDKQKALIADKLG 300
>gi|312377422|gb|EFR24254.1| hypothetical protein AND_11259 [Anopheles darlingi]
Length = 328
Score = 363 bits (933), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 182/286 (63%), Positives = 229/286 (80%), Gaps = 4/286 (1%)
Query: 43 TIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL 102
+++DV+EQ EVV+VL++ LS ADLP+ L YGPPGTGKTST++AA QLFGDM++ERILEL
Sbjct: 33 SVEDVVEQAEVVAVLRESLSTADLPNLLLYGPPGTGKTSTILAAARQLFGDMFKERILEL 92
Query: 103 NASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTME 162
NASDDRGI VIR+KVKTFAQ TASG DGKPCPPFKIVILDEAD+MTHAAQAALRRTME
Sbjct: 93 NASDDRGIAVIRNKVKTFAQLTASGTRADGKPCPPFKIVILDEADAMTHAAQAALRRTME 152
Query: 163 KETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALE 222
KETK+TRFCL+CNYVS II+P+TSRC+KFRFKPL E ++ RL+YIC+QE V D +
Sbjct: 153 KETKTTRFCLVCNYVSRIIEPITSRCTKFRFKPLGEERIIERLRYICDQEQVTVDEAVYK 212
Query: 223 TLVETSGGDMRRAITCLQSCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQ 278
+V+ SGGDMRRAIT LQSC RLKG G I +D+LE++GV+P ++E+ L V +
Sbjct: 213 DIVDISGGDMRRAITTLQSCHRLKGAGARIERQDILEMSGVVPERYLEEFLAVCKSSDYS 272
Query: 279 VLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
LE+Y+++L +AYS QLF+Q + ++ L++KQKAL+ EKL
Sbjct: 273 KLEEYVQNLSYDAYSVGQLFEQLTEYIVYNDGLTEKQKALLCEKLG 318
>gi|307205986|gb|EFN84112.1| Replication factor C subunit 4 [Harpegnathos saltator]
Length = 360
Score = 357 bits (915), Expect = 6e-96, Method: Compositional matrix adjust.
Identities = 180/334 (53%), Positives = 240/334 (71%), Gaps = 5/334 (1%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M AFL+TGKLG K S S S + + PWVEKYRPK++DD++EQ EVV+V+++
Sbjct: 1 MHAFLKTGKLGASV-EVKKPSTSRSKEDKKDLTPWVEKYRPKSVDDIVEQTEVVNVIRQA 59
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ D P+ LFYGPPGTGKTS + AA Q+FG +YR+RILELNASDDRGIQV+RDK+K+F
Sbjct: 60 MEHGDFPNMLFYGPPGTGKTSIIHAAARQMFGSIYRDRILELNASDDRGIQVVRDKIKSF 119
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
A + A+ DGK CPPFKI+ILDEADSMT AAQ ALRR MEKE STRFCL+CNY+S I
Sbjct: 120 ALRRANPTRPDGKKCPPFKIIILDEADSMTGAAQTALRRIMEKEAHSTRFCLVCNYLSRI 179
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+P+TSRC+KFRFKPL++ + RL+YIC +E++M + LE +V SGGD+R+A+ CLQ
Sbjct: 180 IKPITSRCTKFRFKPLSDEKSIARLEYICNEENLMANRNVLEKIVAASGGDLRQAVMCLQ 239
Query: 241 SCARLKGGE-GIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQ 296
S RLKG E I +D L+V G++P+ I L K S+ +E +E+L+LE Y A+Q
Sbjct: 240 SITRLKGIEYEITVDDALDVIGLVPDEKINTLWETCKKGSYNDIETLLENLLLEGYPASQ 299
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+ DQ ++ ++ L+DKQK +I + L + A L
Sbjct: 300 VIDQLNERIIFCEDLNDKQKTMIGDMLGDQQAFL 333
>gi|322797318|gb|EFZ19436.1| hypothetical protein SINV_09794 [Solenopsis invicta]
Length = 353
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 170/316 (53%), Positives = 230/316 (72%), Gaps = 7/316 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPV-PWVEKYRPKTIDDVIEQQEVVSVLKK 59
M AFL+TGKLG AP+ K ++ K K + PWVEKYRP+ +DD++EQ EVV+V+++
Sbjct: 34 MHAFLKTGKLG--APAEVKKPSTSRVKDDKKDLTPWVEKYRPRNVDDIVEQTEVVNVIRQ 91
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
+ D P+ LFYGPPGTGKTS + AA Q+FG MY++RILELNASDDRGIQV+RDK+K+
Sbjct: 92 AMEHGDFPNMLFYGPPGTGKTSIIHAAARQMFGSMYKDRILELNASDDRGIQVVRDKIKS 151
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FA + A+ DGK CPPFKIVILDEADSMT AAQ ALRR MEKE+ STRFCL+CNY+S
Sbjct: 152 FALRRANPNGPDGKKCPPFKIVILDEADSMTGAAQTALRRIMEKESHSTRFCLVCNYLSR 211
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+P+ SRC+KFRFKPL + + RL+YIC +E++ D LE +V+ SGGD+R+A+ CL
Sbjct: 212 IIKPIASRCTKFRFKPLTDEKSIARLEYICNEENLKADRSVLEKIVQASGGDLRQAVMCL 271
Query: 240 QSCARLKGGE-GIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSAT 295
QS RLKG + I D L+V G++P+ I KL K ++ ++K +E+L+LE Y +
Sbjct: 272 QSITRLKGKDYEITVNDALDVIGLVPHDQINKLWEACKKGNYNNVQKLLENLLLEGYPGS 331
Query: 296 QLFDQFHDIVMSASSL 311
Q+ +Q ++ ++ SL
Sbjct: 332 QVIEQLNERIIFPMSL 347
>gi|168030360|ref|XP_001767691.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681011|gb|EDQ67442.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 338
Score = 353 bits (907), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 172/320 (53%), Positives = 224/320 (70%), Gaps = 6/320 (1%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
WVEKYRP+ + DV Q+EVV L L +LPH LFYGPPGTGKT+T +A CHQLFG +
Sbjct: 11 WVEKYRPRKVKDVAHQEEVVRTLTNTLETGNLPHLLFYGPPGTGKTTTALAICHQLFGPE 70
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+Y+ R+LELNASDDRGI V+R K+K FA A G G PCPPFK++ILDEADSMT A
Sbjct: 71 LYKTRVLELNASDDRGINVVRTKIKDFAG-VAVGAGVSGYPCPPFKVLILDEADSMTEDA 129
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME +K TRFC ICNYVS II+PL SRC+KFRFKPL EN M R+QYIC++E
Sbjct: 130 QNALRRTMENYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLLENVMQNRIQYICQEEG 189
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ D +AL TL S GD+RRAITCLQ RL G I +++++ V+G++P+ +E LLK
Sbjct: 190 LKLDQEALSTLSRVSEGDLRRAITCLQCAVRLYGS-NISSKEIISVSGIVPDSVLEGLLK 248
Query: 274 V---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
F + + + D+I E + +Q+ Q D V+ + ++SD QKA I E+LAE + L
Sbjct: 249 ACQSGQFDLAHQEVRDIIAEGHPVSQILSQLFDFVVQSPNISDIQKARITERLAETDKCL 308
Query: 331 QDGASEYIQILDLGSIVIKA 350
DGA EY+Q++D+ S ++A
Sbjct: 309 IDGADEYLQLMDVASNTMRA 328
>gi|326429974|gb|EGD75544.1| replication factor C 4 [Salpingoeca sp. ATCC 50818]
Length = 345
Score = 347 bits (891), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 167/314 (53%), Positives = 228/314 (72%), Gaps = 5/314 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+T DV Q +V++ L+ +SGAD+PH LFYGPPGTGKTST++A +LFG
Sbjct: 24 PWVEKYRPRTTADVAHQSQVIATLRATISGADMPHLLFYGPPGTGKTSTILALSRELFGP 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ +ER+LELNASD+RGI V+R+K+KTFA + S DG PCPPFKI+ILDEAD+MT A
Sbjct: 84 QLMKERVLELNASDERGISVVREKIKTFASTSVSK-GVDGYPCPPFKIIILDEADAMTAA 142
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTMEK + TRFCLICNY+S II+PL SRC+KFRFKPL+ +T++ RLQ+I ++E
Sbjct: 143 AQSALRRTMEKYSNVTRFCLICNYISRIIEPLASRCAKFRFKPLSRDTLVGRLQHIRDKE 202
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
V C + L +++ GDMR+AIT LQS +RL G G+ V E+ G IPN + LL
Sbjct: 203 DVQCSDEVLARIIDLVDGDMRQAITFLQSASRLCGSSGVEVHHVEEIAGAIPNAVMTDLL 262
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ SF+ L++ ++ ++L+ +SA + ++ +V+ A +SD QKA I KLA+ + R
Sbjct: 263 DKCRQGSFENLQETVQSILLDGFSADTIVEELLQLVVEADDISDTQKADIAHKLAQVDKR 322
Query: 330 LQDGASEYIQILDL 343
L DGA E +QI+DL
Sbjct: 323 LVDGADEELQIMDL 336
>gi|297612760|ref|NP_001066296.2| Os12g0176500 [Oryza sativa Japonica Group]
gi|10798806|dbj|BAB16441.1| replication factor C 37 kDa subunit [Oryza sativa Japonica Group]
gi|77553810|gb|ABA96606.1| Activator 1 37 kDa subunit, putative, expressed [Oryza sativa
Japonica Group]
gi|125535960|gb|EAY82448.1| hypothetical protein OsI_37665 [Oryza sativa Indica Group]
gi|125578677|gb|EAZ19823.1| hypothetical protein OsJ_35406 [Oryza sativa Japonica Group]
gi|215737297|dbj|BAG96226.1| unnamed protein product [Oryza sativa Japonica Group]
gi|255670097|dbj|BAF29315.2| Os12g0176500 [Oryza sativa Japonica Group]
Length = 339
Score = 347 bits (890), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 171/321 (53%), Positives = 221/321 (68%), Gaps = 5/321 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ + DV Q+EVV VL L ADLPH LFYGPPGTGKT+T +A +QL+G
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y+ R+LELNASDDRGI V+R K+K FA + G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIILDEADSMTED 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+ D +AL TL S GD+RRAIT LQS ARL G I + D++ V+G IP ++ LL
Sbjct: 190 GLSLDAQALATLSTISNGDLRRAITYLQSAARLFGS-SISSTDLISVSGAIPEDVVKSLL 248
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
K F V K + ++I + Y +QL QF D++++A + D+QKA I +KL E +
Sbjct: 249 ASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICKKLGEADKC 308
Query: 330 LQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S I+A
Sbjct: 309 LVDGADEYLQLLDVASETIRA 329
>gi|405961159|gb|EKC27004.1| Replication factor C subunit 4 [Crassostrea gigas]
Length = 343
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 181/353 (51%), Positives = 238/353 (67%), Gaps = 18/353 (5%)
Query: 1 MEAFLR---TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVL 57
M F + G KD S GK++ K VPWVEK+RP+++DDV Q EVV+VL
Sbjct: 1 MHPFFKPREAGTTSKDPKSLEAAGSGKGGKSKQKHVPWVEKFRPRSVDDVAYQDEVVAVL 60
Query: 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDK 116
KK L G+DLP+ LFYGPPGTGKTST++AA LFG +M + R+LELNASD+RGI V+R+K
Sbjct: 61 KKSLEGSDLPNLLFYGPPGTGKTSTILAAARSLFGAEMMKLRVLELNASDERGINVVREK 120
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
VK FAQ TASG DGKPCPPFKI+ILDEADSMT AQAALRRTMEKE+KSTRFCLICNY
Sbjct: 121 VKKFAQTTASGTRPDGKPCPPFKIIILDEADSMTSPAQAALRRTMEKESKSTRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
VS II+P+ SRC+KFRFKPLA+ + RLQ ICE E + D ++++ L+++S GDMR+AI
Sbjct: 181 VSRIIEPIASRCAKFRFKPLADQILTERLQGICEAEKISYDKESIKALIDSSEGDMRKAI 240
Query: 237 TCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQ 296
T LQS ARLKG E + DV E+ G N +I ++ S ++ E+ L + +
Sbjct: 241 TYLQSVARLKGDEEVSKADVFEIAGA--NTYIYEI----SHRIHRN--ENRFLTEVISDE 292
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
D + S S ++K +++K L DGA EY+Q++ L + +++
Sbjct: 293 TIDVLIKVCHSNSYEKLEKKVQVVDKC------LMDGADEYLQLMALFTTMMR 339
>gi|444509952|gb|ELV09445.1| Replication factor C subunit 4 [Tupaia chinensis]
Length = 322
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 187/358 (52%), Positives = 237/358 (66%), Gaps = 51/358 (14%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS-TSGKT----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + PS+ V+ T+G + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGSSISTKPPSTKDRGVAGTAGGSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKACPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I E+E+V
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVK------------------- 221
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
I NE VIP I+ + + SF LE ++DLI E
Sbjct: 222 ----------------ISNE-------VIPTETIDGIFAACQSGSFDKLEAVVKDLIDEG 258
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++A+QL +Q HDIV+ LSDK K++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 259 HAASQLINQLHDIVVENDDLSDKHKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 316
>gi|18395021|ref|NP_564148.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|15810343|gb|AAL07059.1| putative replication factor [Arabidopsis thaliana]
gi|17065122|gb|AAL32715.1| Similar replication factor C, 37-kDa subunit [Arabidopsis thaliana]
gi|21536935|gb|AAM61276.1| putative replication factor [Arabidopsis thaliana]
gi|34098857|gb|AAQ56811.1| At1g21690 [Arabidopsis thaliana]
gi|332192018|gb|AEE30139.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 339
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 177/323 (54%), Positives = 220/323 (68%), Gaps = 7/323 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EVV VL L AD PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA S Q G PCP FKI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + D +AL TL S GD+RRAIT LQS RL G I + D+L V+GV+P + KL
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLNVSGVVPLEVVNKL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA-SSLSDKQKALILEKLAECN 327
K F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA I + LAE +
Sbjct: 249 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETD 308
Query: 328 ARLQDGASEYIQILDLGSIVIKA 350
RL DGA EY+Q+LD+ S I A
Sbjct: 309 KRLVDGADEYLQLLDVASSTICA 331
>gi|167523687|ref|XP_001746180.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775451|gb|EDQ89075.1| predicted protein [Monosiga brevicollis MX1]
Length = 323
Score = 343 bits (881), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 164/312 (52%), Positives = 227/312 (72%), Gaps = 5/312 (1%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DM 94
+E RPKT DV Q EVV++L+KC++G D+PH LFYGPPGTGKTST++A + FG +
Sbjct: 1 MEHSRPKTTHDVAHQSEVVAMLQKCVAGGDMPHTLFYGPPGTGKTSTILAVAREFFGPQL 60
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ER+LELNASD+RGI V+R+K+K FA TA+ G PCPPFKI++LDEAD+MT AAQ
Sbjct: 61 MKERVLELNASDERGIGVVREKIKNFAVMTANTRVSGGYPCPPFKIILLDEADAMTEAAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRT+E+ + TRFC++CNYVS II+PL SRC+KFRFKPL++ T+L RLQ+I + E+V
Sbjct: 121 SALRRTIEQHSNVTRFCMVCNYVSRIIEPLASRCAKFRFKPLSDATVLARLQHIRDAENV 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL-- 272
C + L+T+V+ SGGDMR+AIT LQSC RL+G GI V +V+G++P I +LL
Sbjct: 181 KCADEVLQTIVKVSGGDMRQAITFLQSCHRLRGDLGIETSHVEDVSGLVPQSTINELLSR 240
Query: 273 -KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQ 331
+SF+ L+ ++D IL +S +QL Q H+ +M + + +KA IL K+A + RL
Sbjct: 241 CNENSFEALQASVDDAILSGFSGSQLLHQLHETLMEM-EMDESKKAKILHKMAVADKRLI 299
Query: 332 DGASEYIQILDL 343
DGA E + +LD+
Sbjct: 300 DGADEQLTLLDV 311
>gi|356515923|ref|XP_003526646.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 343 bits (880), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 177/323 (54%), Positives = 223/323 (69%), Gaps = 8/323 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G NQ +G PCPPFKI++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNQCKNGYPCPPFKIIVLDEADSMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNYVS II+PL SRC+KFRFKPL+E M +R+ YI +
Sbjct: 129 EDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQ 188
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
+E + D +AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E
Sbjct: 189 EEGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGS-SISSENLISVSGVVPAKVVEA 247
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
LLK +F + K + + I E Y A+Q+ Q + ++ + LSD+QKA I +KL E +
Sbjct: 248 LLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEAD 307
Query: 328 ARLQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S IKA
Sbjct: 308 KCLVDGADEYLQLLDVVSNTIKA 330
>gi|356509379|ref|XP_003523427.1| PREDICTED: replication factor C subunit 4-like isoform 1 [Glycine
max]
Length = 342
Score = 343 bits (880), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 176/323 (54%), Positives = 223/323 (69%), Gaps = 8/323 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G NQ G PCPPFKI++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNQRKSGYPCPPFKIIVLDEADSMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNYVS II+PL SRC+KFRFKPL+E M +R+ YI +
Sbjct: 129 EDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQ 188
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
+E + D +AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E+
Sbjct: 189 EEGLCLDAEALSTLSSISHGDLRRAITYLQSAARLFGS-SISSENLISVSGVVPAKVVEE 247
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
LLK +F + K + + I E Y A+Q+ Q + ++ + LSD+QKA I +KL E +
Sbjct: 248 LLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKARISKKLGEAD 307
Query: 328 ARLQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S +KA
Sbjct: 308 KCLVDGADEYLQLLDVVSNTMKA 330
>gi|357160682|ref|XP_003578842.1| PREDICTED: replication factor C subunit 4-like [Brachypodium
distachyon]
Length = 339
Score = 343 bits (879), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 169/321 (52%), Positives = 220/321 (68%), Gaps = 5/321 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ + DV Q+EVV VL L ADLPH LFYGPPGTGKT+T +A +QL+G
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVVRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y+ R+LELNASD+RGI V+R K+K FA + G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDERGINVVRTKIKDFAAVAVGTARKGGYPCPPYKIIILDEADSMTED 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E+ M R+ +IC +E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEDVMTNRILHICHEE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+ D +AL TL GD+RRAIT LQS ARL G I + D++ V+G IP ++ LL
Sbjct: 190 GLTLDAQALSTLSAICQGDLRRAITYLQSAARL-FGSSISSTDLISVSGAIPEDIVKSLL 248
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
K F V K + +I + Y +QL QF D++++A + D+QKA I +KL E +
Sbjct: 249 GACKSGEFDVANKEVSSIIADGYPVSQLLSQFLDVIVNADDIPDEQKARICKKLGEADKC 308
Query: 330 LQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S I+A
Sbjct: 309 LVDGADEYLQLLDMASETIRA 329
>gi|297845144|ref|XP_002890453.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
gi|297336295|gb|EFH66712.1| EMB1968 [Arabidopsis lyrata subsp. lyrata]
Length = 339
Score = 343 bits (879), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 176/323 (54%), Positives = 220/323 (68%), Gaps = 7/323 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EVV VL L AD PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA S Q G PCP FKI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + +AL TL S GD+RRAIT LQS RL G I + D+L+V+GV+P + KL
Sbjct: 190 EGLSLGGEALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLDVSGVVPLEVVNKL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA-SSLSDKQKALILEKLAECN 327
K F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA I + LAE +
Sbjct: 249 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETD 308
Query: 328 ARLQDGASEYIQILDLGSIVIKA 350
RL DGA EY+Q+LD+ S I A
Sbjct: 309 KRLVDGADEYLQLLDVASNTILA 331
>gi|224158698|ref|XP_002192375.1| PREDICTED: replication factor C subunit 4-like, partial
[Taeniopygia guttata]
Length = 294
Score = 340 bits (872), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 168/288 (58%), Positives = 220/288 (76%), Gaps = 4/288 (1%)
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT 124
LP+ LFYGPPGTGKTST++AA +LFG D++R+R+LELNASD+RGIQVIR+KVK FAQ T
Sbjct: 1 LPNLLFYGPPGTGKTSTILAAATELFGPDLFRQRVLELNASDERGIQVIREKVKAFAQLT 60
Query: 125 ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
ASG + DGK CPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNY+S II+PL
Sbjct: 61 ASGSHSDGKMCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPL 120
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
TSRCSKFRFKPL+++ RL + E+E V +A+ LV+ S GD+R+AIT LQS R
Sbjct: 121 TSRCSKFRFKPLSDSIQQQRLLDVSEKEHVKISNEAISYLVKVSEGDLRKAITFLQSATR 180
Query: 245 LKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQF 301
L GG+ I + + E+ GVIP I++LL + SF+ LE ++LI E ++ QL +Q
Sbjct: 181 LMGGKEITEKIITEIAGVIPKETIDELLLGCQSGSFEKLETLAKNLINEGFAVAQLVNQL 240
Query: 302 HDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
HD ++ + SDKQK+ I+EKLAE + L DGA E++Q++ L ++V++
Sbjct: 241 HDTIVESEDYSDKQKSAIVEKLAEVDKCLADGADEFLQLMSLCALVMQ 288
>gi|357463531|ref|XP_003602047.1| Replication factor C subunit [Medicago truncatula]
gi|357520353|ref|XP_003630465.1| Replication factor C subunit [Medicago truncatula]
gi|217073528|gb|ACJ85124.1| unknown [Medicago truncatula]
gi|355491095|gb|AES72298.1| Replication factor C subunit [Medicago truncatula]
gi|355524487|gb|AET04941.1| Replication factor C subunit [Medicago truncatula]
gi|388492316|gb|AFK34224.1| unknown [Medicago truncatula]
Length = 339
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 170/323 (52%), Positives = 222/323 (68%), Gaps = 8/323 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EVV VL L PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G N+ +G PCPP+KI++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNKPKNGYPCPPYKIIVLDEADSMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL E M +R+ YIC+
Sbjct: 129 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSSRIVYICK 188
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
+E + D + L TL S GD+RRAIT LQS ARL G I ++D++ V+G++P +E
Sbjct: 189 EEGIYLDAEGLSTLSNISQGDLRRAITYLQSAARLFGS-SISSKDLISVSGIVPAEVVEA 247
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
LLK +F + K + + I E Y +Q+ Q + ++ + +SD+QKA I +KL E +
Sbjct: 248 LLKACRSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEENDISDEQKARISKKLGEAD 307
Query: 328 ARLQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S I+A
Sbjct: 308 KCLVDGADEYLQLLDVVSNTIQA 330
>gi|388505532|gb|AFK40832.1| unknown [Lotus japonicus]
Length = 342
Score = 339 bits (869), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/323 (53%), Positives = 218/323 (67%), Gaps = 8/323 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN--QDGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G N + G PCPP+KI++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNPKKGGYPCPPYKIIVLDEADSMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ YIC
Sbjct: 129 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICN 188
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
+E + D + L TL S GD+RRAIT LQS ARL G I ++D++ V+GV+P +E
Sbjct: 189 EEGLHLDAEGLSTLSSISQGDLRRAITYLQSSARLFGSH-ISSKDLISVSGVVPENVVEA 247
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
+LK +F + K + + I E Y A+QL Q D ++ SDKQKA I +KL E +
Sbjct: 248 ILKACKSGNFDLANKEVNNFIAEGYPASQLLTQLFDAIVEEKGTSDKQKARICKKLGEAD 307
Query: 328 ARLQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S KA
Sbjct: 308 KCLVDGADEYLQLLDVISNTTKA 330
>gi|116785245|gb|ABK23650.1| unknown [Picea sitchensis]
gi|224286688|gb|ACN41047.1| unknown [Picea sitchensis]
Length = 339
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 170/320 (53%), Positives = 220/320 (68%), Gaps = 5/320 (1%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRPK + DV Q+EVV L L +LPH LFYGPPGTGKT+T +A HQLFG
Sbjct: 11 WVEKYRPKQVKDVAHQEEVVRALTNTLETGNLPHLLFYGPPGTGKTTTALAIAHQLFGPE 70
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
Y+ R+LELNASDDRGI V+R K+K FA SG G CPPFKI+ILDEADSMT A
Sbjct: 71 YKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGNTNSGYLCPPFKIIILDEADSMTEDA 130
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME +K TRFC ICNYVS II+PL SRC+KFRFKPL E+ M R+ +IC++E
Sbjct: 131 QNALRRTMETYSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMTGRILHICKEEG 190
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL- 272
V D AL L S GD+RRAIT LQS ARL G I + +++ V+G++P ++ L
Sbjct: 191 VHLDSDALTMLSSISEGDLRRAITYLQSAARLY-GSSISSNNLISVSGIVPKEVVQSLYQ 249
Query: 273 --KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
K F + +K + D+I E + A+Q+F Q +D+V+ A+ +SD+ KA I ++LAE + L
Sbjct: 250 ACKTGQFDLAQKEVSDIIAEGHPASQIFSQLYDMVVQATDISDETKARISQRLAEADKCL 309
Query: 331 QDGASEYIQILDLGSIVIKA 350
DGA EY+Q+LD+ S +++
Sbjct: 310 IDGADEYLQLLDVASNAMRS 329
>gi|324508707|gb|ADY43673.1| Replication factor C subunit 4 [Ascaris suum]
Length = 354
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 165/328 (50%), Positives = 226/328 (68%), Gaps = 7/328 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP+ +DD++ Q EVVSVLKK L GADLP+ LFYGPPGTGKTS +A C +LF
Sbjct: 29 VPWVEKYRPRKVDDIVFQDEVVSVLKKVLKGADLPNLLFYGPPGTGKTSAAVALCRELFK 88
Query: 93 --DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
D+Y +R+LE+NASD+RGI ++R ++K FA++ S DG K++ILDEAD+MT
Sbjct: 89 NPDVYSDRVLEMNASDERGINIVRTRIKEFARRAVSSRLPDGSHVLGLKVIILDEADAMT 148
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AAQAALRRTMEKE++STRF LICNY+S II PLTSRC+KFRFKPL+ + RL+YICE
Sbjct: 149 DAAQAALRRTMEKESRSTRFFLICNYISRIIPPLTSRCAKFRFKPLSLESQKERLEYICE 208
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
QE V + AL L+E GGD+RR++T LQ+ + + +V ++G +P+ + +
Sbjct: 209 QEDVEVEQAALIELIELCGGDLRRSVTHLQTMSSCHT--KLTPSEVRHLSGAVPDSVVRE 266
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
LL V +F + Y+E + E Y QL Q +++ L D K++I EK+AEC
Sbjct: 267 LLAVCERVNFDEMFAYVESIRREGYGVYQLMTQLFSLILHNKELLDTHKSVIFEKMAECE 326
Query: 328 ARLQDGASEYIQILDLGSIVIKANKTAV 355
RL DGA E++Q+LDL +++++ KT V
Sbjct: 327 VRLLDGADEFLQLLDLSAVILEQYKTVV 354
>gi|449449767|ref|XP_004142636.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 336
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 170/317 (53%), Positives = 217/317 (68%), Gaps = 6/317 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L A+ PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA +SG Q G PCPPFKI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +I +
Sbjct: 130 DAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + D +AL TL S GD+RRAIT LQS ARL G I ++D++ V+G+IP ++ L
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSAARL-FGSSISSKDLVNVSGIIPQEVVDAL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
K +F K + +++ E Y Q+ Q ++V+ + L D+QKA I +KLAE +
Sbjct: 249 FVACKSGNFDTANKKVNNVLAEGYPVAQMLSQIFEVVIEDNDLQDEQKARICKKLAEADK 308
Query: 329 RLQDGASEYIQILDLGS 345
L DGA EY+Q+LD+ S
Sbjct: 309 CLVDGADEYLQLLDVVS 325
>gi|242042039|ref|XP_002468414.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
gi|241922268|gb|EER95412.1| hypothetical protein SORBIDRAFT_01g045530 [Sorghum bicolor]
Length = 339
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 171/321 (53%), Positives = 222/321 (69%), Gaps = 5/321 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ + DV Q+EV+ VL L ADLPH LFYGPPGTGKT+T +A +QL+G
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y+ R+LELNASDDRGI V+R K+K FA + G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKIIILDEADSMTED 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC +E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+ D +AL TL S GD+RRAIT LQS ARL G + + D++ V+GVIP ++ LL
Sbjct: 190 GLNLDAQALSTLSAISQGDLRRAITYLQSAARL-FGSSLSSSDLISVSGVIPEDVVKSLL 248
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
K F V K + ++I + Y +QL QF D+++SA + D QKA I +KL E +
Sbjct: 249 AACKSGEFDVANKEVSNIIADGYPVSQLMAQFLDVIVSADDIQDDQKARICKKLGETDKC 308
Query: 330 LQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S I+A
Sbjct: 309 LVDGADEYLQLLDVASETIRA 329
>gi|355716186|gb|AES05531.1| replication factor C 4, 37kDa [Mustela putorius furo]
Length = 272
Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 165/271 (60%), Positives = 205/271 (75%), Gaps = 2/271 (0%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTR-NKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M+AFL+ + P + +SG+ + KPVPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGTSVSTKPPLKDRGVAGSSGENKKTKPVPWVEKYRPKCVDEVAFQEEVVAVLKK 60
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R+KVK
Sbjct: 61 SLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVREKVK 120
Query: 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNYVS
Sbjct: 121 NFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVS 180
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
II+PLTSRCSKFRFKPL++ RL I ++E V + + LV+ S GD+R+AIT
Sbjct: 181 RIIEPLTSRCSKFRFKPLSDKIQQQRLLDIADKEHVKISNEGIAYLVKVSEGDLRKAITF 240
Query: 239 LQSCARLKGGEGIVNEDVLEVTGVIPNPWIE 269
LQS RL GG+ I + + ++ GVIP I+
Sbjct: 241 LQSATRLTGGKEITEKVITDIAGVIPAETID 271
>gi|225459625|ref|XP_002285874.1| PREDICTED: replication factor C subunit 4 isoform 1 [Vitis
vinifera]
gi|302141781|emb|CBI18984.3| unnamed protein product [Vitis vinifera]
Length = 341
Score = 337 bits (864), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 171/322 (53%), Positives = 221/322 (68%), Gaps = 7/322 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L + PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA SG Q G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC++
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + D +AL TL S GD+RRAIT LQ ARL G I ++D++ V+GV+P ++ L
Sbjct: 190 EELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGS-IISSKDLISVSGVVPQHVVQAL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
K F K + ++I E Y +Q+ Q D+V+ A +SD+QKA I ++LAE +
Sbjct: 249 FAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARICKRLAEADK 307
Query: 329 RLQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S ++A
Sbjct: 308 CLVDGADEYLQLLDVASNAMRA 329
>gi|147858312|emb|CAN83520.1| hypothetical protein VITISV_019805 [Vitis vinifera]
Length = 341
Score = 337 bits (863), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 171/322 (53%), Positives = 221/322 (68%), Gaps = 7/322 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L + PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA SG Q G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAXVAVGSGHRQGGYPCPPYKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC++
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + D +AL TL S GD+RRAIT LQ ARL G I ++D++ V+GV+P ++ L
Sbjct: 190 EELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGS-IISSKDLISVSGVVPQHVVQAL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
K F K + ++I E Y +Q+ Q D+V+ A +SD+QKA I ++LAE +
Sbjct: 249 FAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARICKRLAEADK 307
Query: 329 RLQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S ++A
Sbjct: 308 CLVDGADEYLQLLDVASNAMRA 329
>gi|170094016|ref|XP_001878229.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646683|gb|EDR10928.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 359
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 178/359 (49%), Positives = 232/359 (64%), Gaps = 21/359 (5%)
Query: 7 TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADL 66
T K G A S K +V + PWVEKYRPKTID+V Q+ V+VL+K L+ +L
Sbjct: 5 TPKTGSSAESVPKHTVDPRLQ------PWVEKYRPKTIDEVSAQEHTVAVLRKTLTSTNL 58
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT- 124
PH LFYGPPGTGKTST++A QLFG D +R R+LELNASD+RGI ++RDK+K FA+QT
Sbjct: 59 PHMLFYGPPGTGKTSTILALARQLFGPDNFRNRVLELNASDERGISIVRDKIKNFARQTP 118
Query: 125 -ASGFNQDGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
A DGK PCPP+KI+ILDEADSMT AQ ALRR ME + TRFCL+CNYV+ II
Sbjct: 119 RAQAVASDGKSYPCPPYKIIILDEADSMTQDAQGALRRIMETYARITRFCLVCNYVTRII 178
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+PL SRCSKFRF PL + +RL YI E + + + L+ TS GD+RRAIT LQS
Sbjct: 179 EPLASRCSKFRFTPLDSKSSFSRLSYIATAEHIDTNPAVINALISTSSGDLRRAITYLQS 238
Query: 242 CARLKGG----EGIVNEDVLEVTGVIPNPWIEK---LLKVD---SFQVLEKYIEDLILEA 291
+RL I+ D+ E+ GV+P+ I K +L V+ SF+ + K ++ L+ E
Sbjct: 239 ASRLSSSTIPPTPILPSDIQEIAGVVPDAVINKFSGILGVEKKTSFESINKEVKSLMREG 298
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
YSATQ+ Q HD+V+ +L+ +QK+L AE + L DGA E + IL+ G + KA
Sbjct: 299 YSATQILSQLHDVVILHPTLTGRQKSLCALVFAEADKALCDGADEELWILEAGLRIHKA 357
>gi|391326181|ref|XP_003737599.1| PREDICTED: replication factor C subunit 4-like [Metaseiulus
occidentalis]
Length = 320
Score = 336 bits (861), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 169/324 (52%), Positives = 226/324 (69%), Gaps = 12/324 (3%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRP+T+DDV Q EVVSVLKKCL DLPH LF+GPPGTGKTST++A L
Sbjct: 6 KDLPWVEKYRPRTVDDVASQDEVVSVLKKCLQSGDLPHLLFFGPPGTGKTSTILALARDL 65
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G+ +R+++LELNASD+RGI VIR+KVK F+Q TA NQ GK ++IVILDEADSMT
Sbjct: 66 YGNEFRQKVLELNASDERGISVIREKVKNFSQMTA---NQ-GK--IRYRIVILDEADSMT 119
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTMEK TK+TRFCLICNYV+ II PL SRCSKFRF+PL + ++ +L IC
Sbjct: 120 RDAQTALRRTMEKYTKTTRFCLICNYVTKIIPPLNSRCSKFRFRPLPTDVLVNKLDEICT 179
Query: 211 QESVMCDFKA---LETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW 267
+E+V +F+ L+ L+E + GDMRRA+T LQS R+ E I ED+ + GVIP+
Sbjct: 180 KENV--NFRGSDDLKFLIELAEGDMRRAVTLLQSAHRI-SAEKITREDIRNIAGVIPDNV 236
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
+E++ L K + D + E YS QL Q ++++ + D ++A +LEKLA
Sbjct: 237 VEQIYTEPVLDRLTKRMRDFVREGYSGDQLLTQLLQMIIADERIEDTKRAALLEKLAIVE 296
Query: 328 ARLQDGASEYIQILDLGSIVIKAN 351
R++DGASE I + DL + ++ ++
Sbjct: 297 HRMKDGASELISLQDLAATIVSSH 320
>gi|334182754|ref|NP_001185060.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192020|gb|AEE30141.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 332
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 175/322 (54%), Positives = 215/322 (66%), Gaps = 12/322 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPK + DV Q+EVV VL L AD PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFG- 68
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+LELNASDDRGI V+R K+K FA S Q G PCP FKI+ILDEADSMT
Sbjct: 69 -----VLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +E
Sbjct: 124 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+ D +AL TL S GD+RRAIT LQS RL G I + D+L V+GV+P + KL
Sbjct: 184 GLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLNVSGVVPLEVVNKLF 242
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA-SSLSDKQKALILEKLAECNA 328
K F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA I + LAE +
Sbjct: 243 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 302
Query: 329 RLQDGASEYIQILDLGSIVIKA 350
RL DGA EY+Q+LD+ S I A
Sbjct: 303 RLVDGADEYLQLLDVASSTICA 324
>gi|356515927|ref|XP_003526648.1| PREDICTED: replication factor C subunit 4-like isoform 3 [Glycine
max]
Length = 335
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 175/322 (54%), Positives = 218/322 (67%), Gaps = 13/322 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPK + DV Q EVV VL L PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFG- 68
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADSMTH 151
+LELNASDDRGI V+R K+K FA A G NQ +G PCPPFKI++LDEADSMT
Sbjct: 69 -----VLELNASDDRGINVVRTKIKDFAA-VAVGTNQCKNGYPCPPFKIIVLDEADSMTE 122
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNYVS II+PL SRC+KFRFKPL+E M +R+ YI ++
Sbjct: 123 DAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQE 182
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + D +AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E L
Sbjct: 183 EGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGS-SISSENLISVSGVVPAKVVEAL 241
Query: 272 LKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
LK +F + K + + I E Y A+Q+ Q + ++ + LSD+QKA I +KL E +
Sbjct: 242 LKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEADK 301
Query: 329 RLQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S IKA
Sbjct: 302 CLVDGADEYLQLLDVVSNTIKA 323
>gi|242082974|ref|XP_002441912.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
gi|241942605|gb|EES15750.1| hypothetical protein SORBIDRAFT_08g004780 [Sorghum bicolor]
Length = 339
Score = 334 bits (856), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 170/321 (52%), Positives = 220/321 (68%), Gaps = 5/321 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ + DV Q+EV+ VL L ADLPH LFYGPPGTGKT+T +A +QL+G
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVIRVLTNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y+ R+LELNASDDRGI V+R K+K FA + G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTARKAGYPCPPYKIIILDEADSMTED 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLVSRCAKFRFKPLSEEVMSNRIMHICNEE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+ D +AL TL S GD+RRAIT LQS ARL G I + D++ V+GVIP ++ LL
Sbjct: 190 GLNLDAQALSTLSAISQGDLRRAITYLQSAARL-FGSSISSSDLISVSGVIPEDVVKSLL 248
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ F V K + ++I + Y +QL QF D+++ A + D QKA I +KL E +
Sbjct: 249 AACRSGEFDVANKEVSNIIADGYPVSQLMAQFLDVIVGADDIPDDQKARICKKLGETDKC 308
Query: 330 LQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S I+A
Sbjct: 309 LVDGADEYLQLLDVASETIRA 329
>gi|402861875|ref|XP_003895301.1| PREDICTED: replication factor C subunit 4, partial [Papio anubis]
Length = 298
Score = 333 bits (855), Expect = 6e-89, Method: Compositional matrix adjust.
Identities = 166/270 (61%), Positives = 203/270 (75%), Gaps = 6/270 (2%)
Query: 1 MEAFLR-----TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ T L + T+ S+ + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKSLLTKDRGVAATAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAEKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
AIT LQS RL GG+ I + ++ GVIP
Sbjct: 241 AITFLQSATRLTGGKEITERVITDIAGVIP 270
>gi|255558610|ref|XP_002520330.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540549|gb|EEF42116.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 342
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 166/322 (51%), Positives = 218/322 (67%), Gaps = 6/322 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EVV VL L ++ PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLETSNCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA SG G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGSGQRAGGYPCPPYKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF +CNY+S II+PL SRC+KFRFKPL+E M +R+ +IC +
Sbjct: 130 DAQNALRRTMETYSKVTRFFFLCNYISRIIEPLASRCAKFRFKPLSEEIMSSRVLHICRE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + D +AL TL S GD+RRAIT LQ ARL G I ++D++ V+GVIP + L
Sbjct: 190 EGLNLDAEALSTLSYVSQGDLRRAITYLQGAARLYGST-ISSKDLISVSGVIPQEAVGAL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
+ F + K + ++I E Y +Q+ Q ++V+ A +SD+QKA I + L +
Sbjct: 249 YAACRSGDFDMANKEVNNIIAEGYPVSQMLVQLLEVVVEADDISDEQKAQICKSLGAADK 308
Query: 329 RLQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S ++A
Sbjct: 309 CLVDGADEYLQLLDVASNTMRA 330
>gi|302690912|ref|XP_003035135.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
gi|300108831|gb|EFJ00233.1| hypothetical protein SCHCODRAFT_52161 [Schizophyllum commune H4-8]
Length = 376
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 170/338 (50%), Positives = 222/338 (65%), Gaps = 27/338 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ VSVL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 30 PWVEKYRPKTIDDVSAQEHTVSVLQKALTSTNLPHMLFYGPPGTGKTSTILALSRQLFGP 89
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++R+KVK FA+QT A DGK PCPP+KI+ILDEADS
Sbjct: 90 DNFRSRVLELNASDERGISIVREKVKNFARQTPRAQAVASDGKEYPCPPYKIIILDEADS 149
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRF PL ++ RL YI
Sbjct: 150 MTQDAQGALRRIMETHARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSAAARLSYI 209
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
E+V ++TL+ TSGGD+RRAIT LQS +RL I D+ E+ GV+P
Sbjct: 210 ATNENVAVSPPVIDTLISTSGGDLRRAITYLQSASRLSSSTDPPTPITPVDIQEIAGVVP 269
Query: 265 NPWIEKL-----LKVD-------------SFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
+ I+ ++VD FQ+++ +++++ + YSATQ+ Q HD+V+
Sbjct: 270 DGVIDNFARAVGIEVDGSDAMDVDGLQRRGFQLVQSKVKEVMRDGYSATQILTQLHDLVI 329
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
+LS + KA AE + L DGA E + IL++G
Sbjct: 330 LHPTLSARNKAQSALVFAEADKALCDGADEELWILEVG 367
>gi|226492916|ref|NP_001148581.1| replication factor C subunit 2 [Zea mays]
gi|195620566|gb|ACG32113.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 168/321 (52%), Positives = 220/321 (68%), Gaps = 5/321 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ + DV Q+EV+ VL L ADLPH LFYGPPGTGKT+T +A +QL+G
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y+ R+LELNASDDRGI V+R K+K FA + G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPYKIIILDEADSMTED 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRT E +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC +E
Sbjct: 130 AQNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+ + +A+ TL S GD+RRAIT LQS ARL G I + D++ V+GVIP ++ LL
Sbjct: 190 GLNLNAQAMSTLSVISQGDLRRAITYLQSAARL-FGSSISSSDLISVSGVIPEDVVKSLL 248
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ F V K + +I + Y +QL QF D+++SA + D QKA I +KL E +
Sbjct: 249 AACRSGEFDVANKEVSSIIADGYPVSQLMAQFLDVIVSADDIPDDQKARICKKLGETDKC 308
Query: 330 LQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S I+A
Sbjct: 309 LVDGADEYLQLLDVASETIRA 329
>gi|356515925|ref|XP_003526647.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 330 bits (846), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 173/323 (53%), Positives = 219/323 (67%), Gaps = 20/323 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EV PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVC------------PHMLFYGPPGTGKTTTALAIAHQLFGP 57
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G NQ +G PCPPFKI++LDEADSMT
Sbjct: 58 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNQCKNGYPCPPFKIIVLDEADSMT 116
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNYVS II+PL SRC+KFRFKPL+E M +R+ YI +
Sbjct: 117 EDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQ 176
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
+E + D +AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E
Sbjct: 177 EEGLCLDAEALSTLSFISHGDLRRAITYLQSAARLFGS-SISSENLISVSGVVPAKVVEA 235
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
LLK +F + K + + I E Y A+Q+ Q + ++ + LSD+QKA I +KL E +
Sbjct: 236 LLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFEAIVEENDLSDEQKARISKKLGEAD 295
Query: 328 ARLQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S IKA
Sbjct: 296 KCLVDGADEYLQLLDVVSNTIKA 318
>gi|349605347|gb|AEQ00618.1| Replication factor C subunit 4-like protein, partial [Equus
caballus]
Length = 266
Score = 330 bits (845), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 164/266 (61%), Positives = 203/266 (76%), Gaps = 5/266 (1%)
Query: 25 SGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
SG+ + KPVPWVEKYRPK +D+V Q+EVV+VLKK L GADLP+ LFYGPPGTGKTST+
Sbjct: 1 SGENKKAKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTI 60
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+AA +LFG +++R R+LELNASD+RGIQV+R+KVK FAQ T SG DGKPCPPFKIVI
Sbjct: 61 LAAARELFGPELFRLRVLELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVI 120
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AAQAALRRTMEKE+K+TRFCLICNY+S II+PLTSRCSKFRFKPL++
Sbjct: 121 LDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQQ 180
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL I +E V + + LV+ S GD+R+AIT LQS RL GG+ + + + ++ GV
Sbjct: 181 QRLLDIAGKEHVKISNEGIAYLVKVSEGDLRKAITFLQSATRLTGGKEVTEKVITDIAGV 240
Query: 263 IPNPWIEKLL---KVDSFQVLEKYIE 285
IP I+ LL + SF LE ++
Sbjct: 241 IPAETIDGLLAACQSGSFDKLEAAVK 266
>gi|442749365|gb|JAA66842.1| Putative replication factor c subunit rfc4 [Ixodes ricinus]
Length = 274
Score = 329 bits (844), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 158/248 (63%), Positives = 189/248 (76%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M AFL++ PS + + R VPWVEK RPKT+DDV Q EVVSVLKK
Sbjct: 27 MHAFLKSANPNLAPPSKERGKDTKQKSKREVHVPWVEKSRPKTVDDVAHQDEVVSVLKKS 86
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
L GADLP+ LFYGPPGTGKTST++A +LFGDMY+ RILELNASD+RGIQV+R+K+K F
Sbjct: 87 LLGADLPNLLFYGPPGTGKTSTILALSRELFGDMYKSRILELNASDERGIQVVREKIKNF 146
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+Q TA DG+PCPPFKIVILDEADSMT +AQAALRRTMEK+ K+TRFCLICNY+S I
Sbjct: 147 SQLTAHATRPDGRPCPPFKIVILDEADSMTPSAQAALRRTMEKQPKTTRFCLICNYISRI 206
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I+PLTSRCSKFRFKPL ++ +L RLQ IC E+V CD + + L+E GDMRRAIT +Q
Sbjct: 207 IEPLTSRCSKFRFKPLPKDILLERLQKICTSENVQCDDEVFDFLMEACEGDMRRAITLIQ 266
Query: 241 SCARLKGG 248
S ++LK G
Sbjct: 267 SVSKLKLG 274
>gi|194700788|gb|ACF84478.1| unknown [Zea mays]
gi|194706416|gb|ACF87292.1| unknown [Zea mays]
gi|413916289|gb|AFW56221.1| replication factor C subunit 2 [Zea mays]
Length = 339
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 167/321 (52%), Positives = 220/321 (68%), Gaps = 5/321 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ + DV Q+EV+ VL L ADLPH LFYGPPGTGKT+T +A +QL+G
Sbjct: 10 PWVEKYRPRQVKDVAHQEEVIRVLNNTLQTADLPHMLFYGPPGTGKTTTALAIAYQLYGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y+ R+LELNASDDRGI V+R K+K FA + G PCPP+KI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKNFAAVAVGTARKAGYPCPPYKIIILDEADSMTED 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRT E +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC +E
Sbjct: 130 AQNALRRTTETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSSRIMHICNEE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+ + +A+ TL S GD+RRAIT LQS ARL G I + D++ V+GVIP ++ LL
Sbjct: 190 GLNLNAQAMSTLSVISQGDLRRAITYLQSAARL-FGSSISSSDLISVSGVIPEDVVKSLL 248
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ F V K + +I + Y +QL QF D+++SA + D QKA I +KL E +
Sbjct: 249 AACRSGEFDVANKEVSSIIADGYPVSQLMAQFLDVIVSADDIPDDQKARICKKLGETDKC 308
Query: 330 LQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S I++
Sbjct: 309 LVDGADEYLQLLDVASETIRS 329
>gi|356509381|ref|XP_003523428.1| PREDICTED: replication factor C subunit 4-like isoform 2 [Glycine
max]
Length = 330
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 172/323 (53%), Positives = 219/323 (67%), Gaps = 20/323 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EV PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVC------------PHMLFYGPPGTGKTTTALAIAHQLFGP 57
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G NQ G PCPPFKI++LDEADSMT
Sbjct: 58 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNQRKSGYPCPPFKIIVLDEADSMT 116
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNYVS II+PL SRC+KFRFKPL+E M +R+ YI +
Sbjct: 117 EDAQNALRRTMETYSKVTRFFFICNYVSRIIEPLASRCAKFRFKPLSEEIMSSRILYISQ 176
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
+E + D +AL TL S GD+RRAIT LQS ARL G I +E+++ V+GV+P +E+
Sbjct: 177 EEGLCLDAEALSTLSSISHGDLRRAITYLQSAARL-FGSSISSENLISVSGVVPAKVVEE 235
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
LLK +F + K + + I E Y A+Q+ Q + ++ + LSD+QKA I +KL E +
Sbjct: 236 LLKACKSGNFDLANKEVNNFIAEGYPASQMLTQLFESIVEDNDLSDEQKARISKKLGEAD 295
Query: 328 ARLQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S +KA
Sbjct: 296 KCLVDGADEYLQLLDVVSNTMKA 318
>gi|119598577|gb|EAW78171.1| replication factor C (activator 1) 4, 37kDa, isoform CRA_b [Homo
sapiens]
gi|194386378|dbj|BAG59753.1| unnamed protein product [Homo sapiens]
Length = 303
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 162/268 (60%), Positives = 202/268 (75%), Gaps = 6/268 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ S + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGV 262
AIT LQS RL GG+ I + + ++ GV
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGV 268
>gi|290981375|ref|XP_002673406.1| predicted protein [Naegleria gruberi]
gi|284086989|gb|EFC40662.1| predicted protein [Naegleria gruberi]
Length = 345
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 173/331 (52%), Positives = 227/331 (68%), Gaps = 13/331 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PW EKYRPKT+DDV+ Q+EVVS LKK L +LPH LFYGPPG GKTST A QLFG
Sbjct: 8 PWTEKYRPKTVDDVVHQEEVVSALKKSLEVGNLPHLLFYGPPGNGKTSTATAIAKQLFGP 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI VIR KVKTFAQ TA N GK PCPPFKI+ILDEADSM
Sbjct: 68 ELYKTRVLELNASDERGINVIRTKVKTFAQ-TAVSENPTGKGKYPCPPFKIIILDEADSM 126
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYVS II P+TSRC+KFRFKPL + + RLQYI
Sbjct: 127 TVDAQSALRRTMETYSNVTRFCLICNYVSRIIDPITSRCAKFRFKPLEYSLLKERLQYIA 186
Query: 210 EQESV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
QE + + D K L+T+V S GD+R+AIT LQS +R+ G I + E++G++P+ I
Sbjct: 187 NQEGITLKDEKVLDTIVGHSEGDLRKAITTLQSASRM-FGNAISQNHIAEISGLVPDEII 245
Query: 269 EKLLKVDS---FQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS---SLSDKQKALILEK 322
E++L + V+ + +I + ++A Q+ Q ++S + + D Q++ IL K
Sbjct: 246 EEILTLSQQTDLGVIRSGVNKIIKQGFAAYQIITQLGRYLLSEACCVKMDDIQRSKILLK 305
Query: 323 LAECNARLQDGASEYIQILDLGSIVIKANKT 353
++EC+ L DGA E++Q+L L S + K +T
Sbjct: 306 ISECDKCLIDGADEFLQLLSLASYISKTLQT 336
>gi|359492415|ref|XP_003634411.1| PREDICTED: replication factor C subunit 4 [Vitis vinifera]
Length = 334
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 169/321 (52%), Positives = 216/321 (67%), Gaps = 12/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPK + DV Q EVV VL L + PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETTNCPHMLFYGPPGTGKTTTALAIAHQLFG- 68
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+LELNASDDRGI V+R K+K FA SG Q G PCPP+KI+ILDEADSMT
Sbjct: 69 -----VLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTED 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC++E
Sbjct: 124 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKEE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+ D +AL TL S GD+RRAIT LQ ARL G I ++D++ V+GV+P ++ L
Sbjct: 184 ELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGS-IISSKDLISVSGVVPQHVVQALF 242
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
K F K + ++I E Y +Q+ Q D+V+ A +SD+QKA I ++LAE +
Sbjct: 243 AACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARICKRLAEADKC 301
Query: 330 LQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S ++A
Sbjct: 302 LVDGADEYLQLLDVASNAMRA 322
>gi|409046196|gb|EKM55676.1| hypothetical protein PHACADRAFT_144345 [Phanerochaete carnosa
HHB-10118-sp]
Length = 368
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 166/343 (48%), Positives = 225/343 (65%), Gaps = 26/343 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ V+VL++ L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 23 PWVEKYRPKTIDDVSAQEHTVAVLRRTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++R+K+K FA+QT A + D K PCPP+KI+ILDEADS
Sbjct: 83 DNFRSRVLELNASDERGISIVREKIKDFARQTPRAQAASSDDKTYPCPPYKIIILDEADS 142
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRR ME + TRFCL+CNYV+ II+PL SRCSKFRFKPL + RL I
Sbjct: 143 MTQDAQAALRRIMENYVRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNASTSARLAAI 202
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
E++ ++TL+ TS GD+RR+IT LQS +RL I + D+ E+ GV+P
Sbjct: 203 ASAENIHIPDSVIDTLINTSHGDLRRSITYLQSASRLANSTDPPAPITSADIQEIAGVVP 262
Query: 265 NPWIEKL----------LKVD-------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMS 307
+ ++ + VD F +++ +++++ E YSA QL Q HD+++
Sbjct: 263 DEAVQNFAAALGIEGDTMDVDGTTDRRKGFDQIQRKVKEIVREGYSAAQLLTQLHDLIIE 322
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
+L+ +QKA LAE + L DGA E +QIL++ +V KA
Sbjct: 323 HPTLTARQKAQSALALAEADKALCDGADEELQILEVALLVNKA 365
>gi|393220481|gb|EJD05967.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 370
Score = 327 bits (838), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 168/346 (48%), Positives = 229/346 (66%), Gaps = 29/346 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ +V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 23 PWVEKYRPKTIDDVSSQEHIVAVLQKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D ++ R+LELNASD+RGI ++R+K+K FA+QT A DGK PCPP+KI+ILDEADS
Sbjct: 83 DNFKNRVLELNASDERGITIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIIILDEADS 142
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MTH AQ+ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRF+PL ++ RLQ+I
Sbjct: 143 MTHDAQSALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFRPLDDSATKLRLQHI 202
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
+ E V + + TL+ SGGD+RR+IT LQS +RL I ++D+ E+ GV+P
Sbjct: 203 ADAERVPVIPEVVSTLINVSGGDLRRSITYLQSASRLSSSTDPPTEITSQDIQEIAGVVP 262
Query: 265 NPWIE---KLLKVD-----------------SFQVLEKYIEDLILEAYSATQLFDQFHDI 304
+ + ++L VD F+ ++ ++ LI E YSA QL Q HD+
Sbjct: 263 DRVVNSFGRVLGVDISDGDEMDVDDAKKRRKGFEAVKFKVKGLIREGYSAFQLLSQLHDL 322
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
++ +L+ +QKA AE + L DGA E +Q+L++ V +A
Sbjct: 323 IILHPTLTARQKARCAMVFAEADKALCDGADEELQVLEVALQVHQA 368
>gi|339257864|ref|XP_003369118.1| replication factor C subunit 4 [Trichinella spiralis]
gi|316966678|gb|EFV51223.1| replication factor C subunit 4 [Trichinella spiralis]
Length = 357
Score = 327 bits (838), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 168/336 (50%), Positives = 219/336 (65%), Gaps = 30/336 (8%)
Query: 40 RPKTIDDVIEQQEVVSVLKKCLSGAD--------------------------LPHFLFYG 73
RPK +DD+ Q EVV+VLKK L+ D +P+ LFYG
Sbjct: 14 RPKIVDDIAYQDEVVAVLKKSLTSNDKLRLCLMILYFVEHLIRFANILDNYFIPNLLFYG 73
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PPGTGKTS ++A C Q+FG ++YR+R+LELNASD+RGI VIRDKVK F+Q AS + G
Sbjct: 74 PPGTGKTSAILALCRQIFGSEIYRDRVLELNASDERGIDVIRDKVKLFSQFAASEITEGG 133
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
K CPP K+VILDEADSMT AQAALRRTME+E+K+TRFCLICNY+SCII+P+TSRC+KFR
Sbjct: 134 KKCPPLKMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYISCIIEPITSRCAKFR 193
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
FKPL + RL+ ICE ESV D AL +L+ GD+RRAI LQS A K + IV
Sbjct: 194 FKPLTLEIQIERLRKICENESVSIDDAALSSLISFCDGDLRRAINTLQSAASFKDKKEIV 253
Query: 253 NEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 309
D+ E+ ++P ++E+ + + S + +EK + L EAYSA Q Q HD ++
Sbjct: 254 QTDIEEICQIVPEEFVEQFIAICRKGSHENMEKLVLQLQREAYSAYQFIIQLHDKLIDDL 313
Query: 310 SLSDKQKALILEKLAECNARLQDGASEYIQILDLGS 345
+SD +A L KLA C R+ GA E +Q++DLG+
Sbjct: 314 MVSDLARAKFLSKLAVCENRILAGADETLQLMDLGT 349
>gi|224084964|ref|XP_002307456.1| predicted protein [Populus trichocarpa]
gi|222856905|gb|EEE94452.1| predicted protein [Populus trichocarpa]
Length = 342
Score = 327 bits (837), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 167/321 (52%), Positives = 213/321 (66%), Gaps = 6/321 (1%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
WVEKYRPK I DV Q EVV VL L A+ PH LFYGPPGTGKT+T +A HQL+G +
Sbjct: 11 WVEKYRPKQIKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLYGPE 70
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+Y+ R+LELNASDDRGI V+R K+K FA SG Q PCPP+KI+ILDEADSMT
Sbjct: 71 LYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGQRQGVYPCPPYKIIILDEADSMTED 130
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL E M R+ +IC +E
Sbjct: 131 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLPEEIMSNRILHICNEE 190
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+ D +AL TL S GD+RRAIT LQ ARL G I ++D++ V+G IP E +
Sbjct: 191 GLTLDTEALSTLSSVSQGDLRRAITYLQGAARLFGS-SISSKDLISVSGAIPREVTEAIY 249
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
K F + K + D+I E Y +Q+ Q ++V+ +SD+QKA I + LA +
Sbjct: 250 AACKNGDFDLANKEVNDVIAEGYPVSQMLAQLFEVVVEVDDISDEQKARICKSLATADKC 309
Query: 330 LQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S +++
Sbjct: 310 LVDGADEYLQLLDVVSNTMRS 330
>gi|30687479|ref|NP_849695.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192019|gb|AEE30140.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 327
Score = 327 bits (837), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 171/323 (52%), Positives = 214/323 (66%), Gaps = 19/323 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EV PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVC------------PHMLFYGPPGTGKTTTALAIAHQLFGP 57
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA S Q G PCP FKI+ILDEADSMT
Sbjct: 58 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 117
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +
Sbjct: 118 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 177
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + D +AL TL S GD+RRAIT LQS RL G I + D+L V+GV+P + KL
Sbjct: 178 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLNVSGVVPLEVVNKL 236
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA-SSLSDKQKALILEKLAECN 327
K F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA I + LAE +
Sbjct: 237 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETD 296
Query: 328 ARLQDGASEYIQILDLGSIVIKA 350
RL DGA EY+Q+LD+ S I A
Sbjct: 297 KRLVDGADEYLQLLDVASSTICA 319
>gi|390594192|gb|EIN03605.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 364
Score = 325 bits (832), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 165/335 (49%), Positives = 225/335 (67%), Gaps = 18/335 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTI+DV Q+ V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 28 PWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 87
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++R+K+K FA+QT A + DGK PCPP+KI+ILDEADS
Sbjct: 88 DNFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSSDGKTYPCPPYKIIILDEADS 147
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRR ME + TRFCL+CNYV+ II+PL SRCSKFRFKPL + +RLQ++
Sbjct: 148 MTQDAQAALRRIMENYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPTSTSSRLQHV 207
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
+ E V L+TLV S GD+RR+IT LQS +RL I D+ E+ GV+P
Sbjct: 208 ADAERVPVTPAVLDTLVSASQGDLRRSITYLQSASRLSASTDPPIPITPTDIQEIAGVVP 267
Query: 265 NPWIE---KLLKVDS------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 315
+ ++ ++L VD+ F + + + +++ E YSA+QL Q HD+++ +L+ +
Sbjct: 268 DAVVKNFARVLGVDNRARKKGFDNIREKVREIMREGYSASQLLSQLHDLIILHPTLTARH 327
Query: 316 KALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
K+ AE + L DGA E + IL++ V +A
Sbjct: 328 KSRCAMVFAEADKALCDGADEELWILEVALKVHRA 362
>gi|19115452|ref|NP_594540.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe 972h-]
gi|1350581|sp|Q09843.1|RFC2_SCHPO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|1039340|emb|CAA91237.1| DNA replication factor C complex subunit Rfc2 [Schizosaccharomyces
pombe]
Length = 340
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 169/338 (50%), Positives = 216/338 (63%), Gaps = 10/338 (2%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
AP + KT + K +PWVE YRPKT+D V Q+ V VLKK L +LPH LFYG
Sbjct: 5 APRNKKTE-----QEAKKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYG 59
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PGTGKTST++A +LFG + + R+LELNASD+RGI +IR+KVK+FA+ T + DG
Sbjct: 60 SPGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN-KVDG 118
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
PCPPFKI+ILDEADSMT AQAALRRTME + TRFCLICNY++ II PL+SRCSK+R
Sbjct: 119 YPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYR 178
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
FKPL M+ RL++I ++V + + LVE SGGDMR+AIT LQS A L G I
Sbjct: 179 FKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPIT 238
Query: 253 NEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 309
V E+ G +P I LL + +E D+ E YS + Q HD+++
Sbjct: 239 ISSVEELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEE 298
Query: 310 SLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
+LS K I KL+E + RL DGA E +Q+LDL S +
Sbjct: 299 TLSSPVKYKIFMKLSEVDKRLNDGADETLQLLDLLSSI 336
>gi|358054157|dbj|GAA99693.1| hypothetical protein E5Q_06396 [Mixia osmundae IAM 14324]
Length = 446
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 170/359 (47%), Positives = 224/359 (62%), Gaps = 40/359 (11%)
Query: 23 STSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
S R +PV PWVEKYRPKTIDD+ Q+ V VL+K L A+LPH LFYGPPG
Sbjct: 77 SNGAVERKRPVLAAQAQPWVEKYRPKTIDDISAQENTVRVLRKSLENANLPHMLFYGPPG 136
Query: 77 TGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
TGKTST++A QLFG + +R R+LELNASD+RGI V+R+K+K FA+ S D PC
Sbjct: 137 TGKTSTILALAKQLFGPEAFRTRVLELNASDERGITVVREKIKNFAKIAISPAVGD-YPC 195
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
PP+KI+ILDEADSMT AQ+ALRR ME +K TRFCLICNYV+ II+P+TSRCSKFRFKP
Sbjct: 196 PPYKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRIIEPITSRCSKFRFKP 255
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE- 254
L RL+Y+C++E V C ++++ L+ S GD+RRAIT LQS +RL G + V+
Sbjct: 256 LDTTNTQKRLEYVCQKEEVQCGEESVQALIRCSEGDLRRAITYLQSASRLYGKDKPVDPV 315
Query: 255 DVLEVTGVIPNPWIEK-----------------------LLKVD--------SFQVLEKY 283
+ E+ GV+P+P I L++VD F +
Sbjct: 316 SIQEIAGVVPDPVINSLARDLGVDVPESAAEAKAGEDNDLMQVDPKKPNKTGGFDAVNAA 375
Query: 284 IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
+ ++ + YSATQL Q HD+ + LS + K+ I L E + L DGA E++QIL+
Sbjct: 376 VTRVVRQGYSATQLLSQLHDVCIFNVLLSKRAKSAIAMALGEADKCLTDGADEHLQILN 434
>gi|169854167|ref|XP_001833760.1| replication factor C [Coprinopsis cinerea okayama7#130]
gi|116505157|gb|EAU88052.1| replication factor C [Coprinopsis cinerea okayama7#130]
Length = 380
Score = 324 bits (830), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 168/367 (45%), Positives = 231/367 (62%), Gaps = 30/367 (8%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APS+ + + PWVEKYRPKTI+++ Q+ SVL + L+ A+LPH LFYG
Sbjct: 10 APSNKNNAAAAKHVVNPANQPWVEKYRPKTINEISAQEHTTSVLSRTLTSANLPHMLFYG 69
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTA---SGFN 129
PPGTGKTST++A +LFG D +R R+LELNASD+RGI ++RDK+K FA+QT +
Sbjct: 70 PPGTGKTSTILALARELFGPDNFRNRVLELNASDERGISIVRDKIKNFARQTPRAQQAVS 129
Query: 130 QDGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
DGK PCPP+KI+ILDEADSMT AQ ALRR ME K TRFCL+CNYV+ II+PL SR
Sbjct: 130 SDGKTYPCPPYKIIILDEADSMTQDAQGALRRIMETYAKITRFCLVCNYVTRIIEPLASR 189
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
CSKFRF PL ++ RL YI + E++ ++ L+ TS GD+RRAIT LQS ARL G
Sbjct: 190 CSKFRFTPLDPDSASARLSYIAQAENIDISKPVIDALISTSHGDLRRAITYLQSAARLAG 249
Query: 248 GEG----IVNEDVLEVTGVIPN------------PWIEKLLKVD--------SFQVLEKY 283
I+ D+ E+ GV+P+ P ++ ++VD +F ++K
Sbjct: 250 SSDPPTPILPRDIQEIAGVVPDGVVNDFASTLGVPVEDEGMEVDGQTSRKATNFSGIQKK 309
Query: 284 IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+++L+ E YSATQ+ Q HD++M L+ +K+ AE + L DGA E + +L++
Sbjct: 310 VKELMREGYSATQILSQLHDLIMLHPELNGLKKSKCALAFAEADKALCDGADEELWVLEV 369
Query: 344 GSIVIKA 350
G + KA
Sbjct: 370 GLKIHKA 376
>gi|281209849|gb|EFA84017.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 357
Score = 323 bits (829), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 160/337 (47%), Positives = 227/337 (67%), Gaps = 8/337 (2%)
Query: 21 SVSTSGKTRNKPV-PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
S ST+ T +PV PWV KYRPKT+D+V Q EVV LK+ L +LPH LFYGPPGTGK
Sbjct: 2 SKSTNQNTPYRPVEPWVNKYRPKTVDEVSHQDEVVKALKRSLETGNLPHLLFYGPPGTGK 61
Query: 80 TSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCP 136
TST++A LFG ++Y++R+LELNASD+RGI+V+R K+K FA + S N +GKP
Sbjct: 62 TSTILAVAMDLFGPELYKDRVLELNASDERGIEVVRTKIKNFASFSVSQNNTLTNGKPAA 121
Query: 137 PFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPL 196
FK+++LDEADSMTH AQAALRR +E +K+TRFCL+CNY++ II+PL+SRC+KFRFK L
Sbjct: 122 AFKLIVLDEADSMTHDAQAALRRIIEYTSKTTRFCLLCNYITRIIEPLSSRCAKFRFKSL 181
Query: 197 AENTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
+ M+ RL+YI ES+ + + + S GD+R+AIT LQS R G + ++
Sbjct: 182 NDTAMIERLRYIASSESMPPVKDEVYQAIHAVSDGDLRKAITYLQSSYRFYGSRELTPDN 241
Query: 256 VLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLS 312
+ ++G +P IE L+ K +S+ L+ ++ L+ + Y A+Q+ Q D V + S S
Sbjct: 242 IYNISGTVPPKLIETLINTCKSNSYDKLQSNLQQLVTKGYPASQILVQIFDQVTNHKSFS 301
Query: 313 DKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
DKQKALI K+ + + L DG+ E++Q+ D S ++K
Sbjct: 302 DKQKALIAMKIGDVDRNLVDGSEEFLQLFDTVSFIMK 338
>gi|225459627|ref|XP_002285875.1| PREDICTED: replication factor C subunit 4 isoform 2 [Vitis
vinifera]
Length = 329
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 167/322 (51%), Positives = 216/322 (67%), Gaps = 19/322 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EV PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVC------------PHMLFYGPPGTGKTTTALAIAHQLFGP 57
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA SG Q G PCPP+KI+ILDEADSMT
Sbjct: 58 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGHRQGGYPCPPYKIIILDEADSMTE 117
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ +IC++
Sbjct: 118 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILHICKE 177
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + D +AL TL S GD+RRAIT LQ ARL G I ++D++ V+GV+P ++ L
Sbjct: 178 EELNLDSEALSTLSSISQGDLRRAITYLQGAARLFGS-IISSKDLISVSGVVPQHVVQAL 236
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
K F K + ++I E Y +Q+ Q D+V+ A +SD+QKA I ++LAE +
Sbjct: 237 FAACKSGDFDSANKEVNNVIAEGYPVSQMLYQLFDVVVEA-DISDEQKARICKRLAEADK 295
Query: 329 RLQDGASEYIQILDLGSIVIKA 350
L DGA EY+Q+LD+ S ++A
Sbjct: 296 CLVDGADEYLQLLDVASNAMRA 317
>gi|334182756|ref|NP_001185061.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
gi|332192021|gb|AEE30142.1| replication factor C subunit 2/4 [Arabidopsis thaliana]
Length = 341
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 169/318 (53%), Positives = 213/318 (66%), Gaps = 11/318 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EVV VL L AD PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA S Q G PCP FKI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + D +AL TL S GD+RRAIT LQS RL G I + D+L V+GV+P + KL
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGST-ITSTDLLNVSGVVPLEVVNKL 248
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA-SSLSDKQKALILEKLAECN 327
K F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA I + LAE +
Sbjct: 249 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETD 308
Query: 328 AR----LQDGASEYIQIL 341
L++G+ +QIL
Sbjct: 309 KYNLCPLRNGSRLLMQIL 326
>gi|320169797|gb|EFW46696.1| replication factor C subunit 4 [Capsaspora owczarzaki ATCC 30864]
Length = 347
Score = 322 bits (824), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 165/341 (48%), Positives = 223/341 (65%), Gaps = 14/341 (4%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
+L + A +T+ ST+ PWVEKYRP+T+D+V Q EVV+VLKK L+ D PH
Sbjct: 6 QLNQGASRKRETATSTT-------TPWVEKYRPRTVDEVAFQDEVVAVLKKSLTSNDFPH 58
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
LFYGPPGTGKTST++A Q+FG ++ + RILELNASD+RGI V+R+KVKT Q
Sbjct: 59 LLFYGPPGTGKTSTILAIARQMFGPELMKTRILELNASDERGISVVREKVKTLHQSLRLK 118
Query: 128 FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
+ G PCPPFKI+ILDEADSMT AQ+ALRR ME +K+TRFCLICNYVS II+PL SR
Sbjct: 119 W---GYPCPPFKIIILDEADSMTADAQSALRRMMETYSKTTRFCLICNYVSRIIEPLASR 175
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
C+KFRFKPL + +L I ++E + D A+ L SGGDMRRAIT +Q C RL G
Sbjct: 176 CAKFRFKPLDAGILTEKLTAIGDKEGLQIDASAINQLTAASGGDMRRAITLMQCCFRLNG 235
Query: 248 GEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
+ I +DV+ GV+P+ I KL K SF+ ++ ++++ +SA Q+ Q +
Sbjct: 236 SDPITADDVVAAAGVVPDDMIRKLWKECASGSFEKVQAAVKEIEASGFSAEQVLSQAFEQ 295
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGS 345
++ ++D QK+ I A + +L DGA E +Q+L + S
Sbjct: 296 FLARPDMTDAQKSAIALAFANSDRQLVDGADESLQLLSVFS 336
>gi|392573304|gb|EIW66444.1| hypothetical protein TREMEDRAFT_74703 [Tremella mesenterica DSM
1558]
Length = 490
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 161/332 (48%), Positives = 223/332 (67%), Gaps = 23/332 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 148 PWVEKYRPKTIDDVSSQENTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGP 207
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS--GFNQDGK--PCPPFKIVILDEADS 148
D++R R+LELNASD+RGI V+R+K+KTFA++T + DGK PCPPFK++ILDEADS
Sbjct: 208 DLFRSRVLELNASDERGITVVREKIKTFARETPRHVSLSSDGKTYPCPPFKLIILDEADS 267
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MTH AQ+ALRR ME ++ TRFCL+CNYV+ II+PL SRCSKFRFKPLA+ + R++ I
Sbjct: 268 MTHDAQSALRRIMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLAQGSSQARMEMI 327
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
+ E V + L+ ++E +GGD+R+AIT LQ+ RL G I + E++GV+P
Sbjct: 328 VKAEGVDIEDGVLDRILELAGGDLRKAITFLQTAQRLHGATSPPTPISAMSIHEISGVVP 387
Query: 265 NPWIEKLLK---VD-----------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS 310
+ I LL+ VD +F + ++ + E +SA Q+ +Q HD ++ +
Sbjct: 388 DTTIHSLLRSMGVDPFSGIDLSIRSTFDTVRTAVKSISREGWSAGQVLEQLHDALIPIPT 447
Query: 311 LSDKQKALILEKLAECNARLQDGASEYIQILD 342
+ QK+ +AEC+ L +G E +Q+LD
Sbjct: 448 IPAMQKSQAALAIAECDKGLCEGGDEELQLLD 479
>gi|296421403|ref|XP_002840254.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636469|emb|CAZ84445.1| unnamed protein product [Tuber melanosporum]
Length = 372
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 161/339 (47%), Positives = 227/339 (66%), Gaps = 17/339 (5%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST K N+PVPWVEKYRPK ++DV Q +SVLK+ L ++LPH LFYGPPGTGKTST
Sbjct: 24 STKAKDPNRPVPWVEKYRPKNLNDVSAQDHTISVLKRTLQSSNLPHMLFYGPPGTGKTST 83
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDGKPCPPF 138
++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+ TAS PCPP+
Sbjct: 84 VLALAKELYGPELMKSRVLELNASDERGISIVREKVKNFARITVSTASSTQSSNYPCPPY 143
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
KI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFKPL E
Sbjct: 144 KIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDE 203
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG------GEGIV 252
RL+ I + E+V + ++ L++ S GD+R+AIT LQS ARL + I
Sbjct: 204 ENAKLRLEEIAKMENVEYEDGVIDALIKVSEGDLRKAITYLQSAARLHNPIIRPKPKKIT 263
Query: 253 NEDVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+ + E+ GVIP+ I+KLL+ ++ + + ++D++ + +SA Q+ Q ++ +
Sbjct: 264 VKSIQEIAGVIPDQTIDKLLEACELEKGKSAYSEISRLVQDIVADGWSAGQVVFQLYNKL 323
Query: 306 MSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
+ ++ +QK I+ +E + RL DG+ E++QILDL
Sbjct: 324 VFNDEVTAEQKNDIVLIFSEVDKRLVDGSDEHLQILDLA 362
>gi|403416153|emb|CCM02853.1| predicted protein [Fibroporia radiculosa]
Length = 371
Score = 321 bits (822), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 167/347 (48%), Positives = 223/347 (64%), Gaps = 30/347 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDD+ Q+ V+VL++ L+ +LPH LFYGPPG+GKTST++A QLFG
Sbjct: 23 PWVEKYRPKTIDDISAQEHTVAVLRRTLTSTNLPHMLFYGPPGSGKTSTILALSRQLFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++RDK+K FA+QT A + DGK PCPP+KI+ILDEADS
Sbjct: 83 DNFRSRVLELNASDERGIAIVRDKIKNFARQTPRAQAVSSDGKTYPCPPYKIIILDEADS 142
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRFKPL + +RL I
Sbjct: 143 MTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDSTSTSSRLSQI 202
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
+E + + + TL+ TS GD+RR+IT LQS +RL I D+ E+ GV+P
Sbjct: 203 ALEEHISVTDEVVSTLINTSHGDLRRSITYLQSASRLAMSTNPPTEITPSDIQEIAGVVP 262
Query: 265 NPWIEKL-------------LKVD--------SFQVLEKYIEDLILEAYSATQLFDQFHD 303
+ I + VD F ++K ++++I + YSATQ+ Q HD
Sbjct: 263 DTVINDFAATLGVEVLVPNAMDVDIPATSRAKDFDGVKKKVKEIIRQGYSATQILSQLHD 322
Query: 304 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
+V+ +LS +QK+ AE + L DGA E + IL++G V KA
Sbjct: 323 LVIEHPTLSARQKSRCALVFAEADKALCDGADEELWILEVGLCVHKA 369
>gi|402225443|gb|EJU05504.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 370
Score = 321 bits (822), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 165/341 (48%), Positives = 217/341 (63%), Gaps = 25/341 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PW+EKYRPKT++++ Q+ V VLKK L A+LPH LFYGPPGTGKTST++A QLFG
Sbjct: 27 PWIEKYRPKTMEEISAQEHTVQVLKKTLGSANLPHMLFYGPPGTGKTSTILALARQLFGP 86
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
+++R R+LELNASD+RGI V+R+K+K FA+QT + + G PCPP+KI+ILDEADSM
Sbjct: 87 ELFRSRVLELNASDERGITVVREKIKNFARQTPRAADDEASKGYPCPPYKIIILDEADSM 146
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQAALRR ME K TRFCL+CNYV+ II+PL SRCSKFRF L ++ RL+YI
Sbjct: 147 TQDAQAALRRVMETYAKITRFCLVCNYVTRIIEPLASRCSKFRFHTLDASSNRARLEYIA 206
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE----DVLEVTGVIPN 265
E V + TL+ TS GD+RR+IT LQS RL E D+ E+ GVIPN
Sbjct: 207 TAEHVSVTPAVISTLISTSEGDLRRSITYLQSAHRLSASTSPPTEIQPRDIQEIAGVIPN 266
Query: 266 PWIEKLLK-----VD------------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA 308
+ + K VD F + +++L++ YSATQ+ Q HDI++
Sbjct: 267 AVVNRFAKALGVEVDGDVDMDIDARKQGFDGVRNAVQELVMGGYSATQVLSQLHDIIILH 326
Query: 309 SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
LS QK+ AE + +L DGA E +Q++D+G V K
Sbjct: 327 PLLSGPQKSKCALVFAEIDKKLSDGADEELQLVDMGLRVWK 367
>gi|348688417|gb|EGZ28231.1| hypothetical protein PHYSODRAFT_551952 [Phytophthora sojae]
Length = 339
Score = 320 bits (821), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 164/344 (47%), Positives = 229/344 (66%), Gaps = 16/344 (4%)
Query: 20 TSVSTSGKTRNKPV-PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTG 78
++ STS PV PWVEKYRPK +D++ Q+ VV+ LK ++ LPH LFYGPPGTG
Sbjct: 3 STASTSKTNLPAPVLPWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTG 62
Query: 79 KTSTMIAACHQLFGDMYRE--RILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDGK 133
KTST++A QLFG +R+ R LELNASDDRGI+V+R+KVK+FAQ +ASG
Sbjct: 63 KTSTIVAVGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASGL----- 117
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PPFKI++LDEADSMT AQ+ALRR ME +K TRFCLICNYVS II+P+ SRC+KFRF
Sbjct: 118 --PPFKIIVLDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRF 175
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
PL +M +R+++I +E V LE+L+E S GD+R+AI LQS +L G + +
Sbjct: 176 APLERGSMASRVRFIASEEHVNVPDPVLESLLECSNGDLRKAINYLQSAKQLCGDDELSQ 235
Query: 254 EDVLEVTGVIPNPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS 310
+DV+ V G+ P +++ + +SF+ ++ IE ++L Y + Q +D V++
Sbjct: 236 DDVIAVAGLAPPELLKQFWVSVASNSFEKMKTDIESILLAGYPVLTILRQLNDDVLALDK 295
Query: 311 LSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
L+D QKA I ++AE + RL DGASE+ Q+LD+ S ++ +A
Sbjct: 296 LNDVQKAKISLRIAEADKRLVDGASEHFQLLDVASYAMRVYHSA 339
>gi|402078075|gb|EJT73424.1| replication factor C subunit 2 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 384
Score = 320 bits (820), Expect = 7e-85, Method: Compositional matrix adjust.
Identities = 163/339 (48%), Positives = 223/339 (65%), Gaps = 28/339 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q V+VL++ L ++LPH LFYGPPGTGKTST++A +LFG
Sbjct: 35 PWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELFGP 94
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS----GFNQDGKPCPPFKIVILDEADS 148
++ R R+LELNASD+RGI ++R+KVK FA+ + G+++ PCPPFKI+ILDEADS
Sbjct: 95 ELMRSRVLELNASDERGISIVREKVKDFARMQLTNPPPGYDRSKYPCPPFKIIILDEADS 154
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL++I
Sbjct: 155 MTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKARLEHI 214
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG-----GEG-----------IV 252
E+E V + A++ L+++S GD+R+AIT LQS ARL G GEG +
Sbjct: 215 AEKECVALEPGAVDALIKSSEGDLRKAITFLQSAARLVGAGRASGEGEQDTMDVDSKAVT 274
Query: 253 NEDVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+ V ++ GVIP I+ L++ ++Q + K +E+++ + +SATQ+ Q +
Sbjct: 275 AQIVEDIAGVIPTATIDGLVEAMRPRGSGQTYQSVAKVVENMVADGWSATQVVSQLFQAI 334
Query: 306 MSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
M + D QK I +E + RL DGA E++ ILDLG
Sbjct: 335 MYDEEIPDVQKNAISIVFSEIDKRLVDGADEHLSILDLG 373
>gi|213403013|ref|XP_002172279.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
gi|212000326|gb|EEB05986.1| replication factor C subunit 2 [Schizosaccharomyces japonicus
yFS275]
Length = 340
Score = 319 bits (818), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 164/334 (49%), Positives = 214/334 (64%), Gaps = 9/334 (2%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
AP S+K + K VPWVE YRPK++D+V Q + VLKK + +LPH LFYG
Sbjct: 5 APQSAKVQAHLT----KKAVPWVEHYRPKSLDEVSSQDMTIQVLKKTMMSNNLPHMLFYG 60
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PGTGKTST++A +LFG + + R+LELNASD+RGI +IR+KVK FA+ A +G
Sbjct: 61 SPGTGKTSTILALARELFGPQLVKSRVLELNASDERGISIIREKVKNFAR-IAVNNTVNG 119
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
PCPPFKIVILDEADSMT AQAALRRTME + TRFCL+CNYV+ II PL SRCSK+R
Sbjct: 120 YPCPPFKIVILDEADSMTQDAQAALRRTMEATARITRFCLVCNYVTRIIDPLASRCSKYR 179
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
FKPL + RL++I ++V + ++ LV SGGDMR+AIT LQS A L G +
Sbjct: 180 FKPLDAQDIAKRLEFIAADQTVALEPGVIDALVSVSGGDMRKAITFLQSAATLHQGTPVT 239
Query: 253 NEDVLEVTGVIPNPWIEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 309
V+E++G IP+ I++LL V +E E + +S L Q HD VM+
Sbjct: 240 VNTVIEISGRIPDDVIQELLDVSKSKDISKIESVAETVTANGFSTGLLLSQLHDKVMADE 299
Query: 310 SLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
S+ K IL K++E + L DGA EY+Q+LD+
Sbjct: 300 SIPSNSKHKILLKMSEVDKCLTDGADEYLQLLDM 333
>gi|5263320|gb|AAD41422.1|AC007727_11 Similar to gb|M87339 replication factor C, 37-kDa subunit from Homo
sapiens and is a member of PF|00004 ATPases associated
with various cellular activities [Arabidopsis thaliana]
Length = 319
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 168/323 (52%), Positives = 208/323 (64%), Gaps = 27/323 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q+EVV VL L AD PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA S Q G PCP FKI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +IC +
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + D +AL TL S GD+RRAIT LQ V+P + KL
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQ---------------------VVPLEVVNKL 228
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA-SSLSDKQKALILEKLAECN 327
K F + K +++++ E Y A+Q+ +Q DIV A S ++D QKA I + LAE +
Sbjct: 229 FTACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETD 288
Query: 328 ARLQDGASEYIQILDLGSIVIKA 350
RL DGA EY+Q+LD+ S I A
Sbjct: 289 KRLVDGADEYLQLLDVASSTICA 311
>gi|389749254|gb|EIM90431.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 379
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 169/373 (45%), Positives = 227/373 (60%), Gaps = 40/373 (10%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
PS T S T +P WVEKYRPKTI+DV Q+ +V+VL+K L+ +LPH LFYGP
Sbjct: 9 PSRKATKEQVSADTNLQP--WVEKYRPKTIEDVSAQEHIVAVLEKTLTSTNLPHMLFYGP 66
Query: 75 PGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQD 131
PGTGKTST++A QLFG D +R R+LELNASD+RGI ++R+K+K FA+QT A + D
Sbjct: 67 PGTGKTSTILALSRQLFGPDNFRSRVLELNASDERGIAIVREKIKNFARQTPRAQAVSSD 126
Query: 132 GK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
GK PCPP+KI+ILDEADSMT AQAALRR ME TRFCL+CNYV+ II+PL SRCS
Sbjct: 127 GKAYPCPPYKIIILDEADSMTQDAQAALRRIMETYAHITRFCLVCNYVTRIIEPLASRCS 186
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
KFRFKPL +++ RL++I E + L+ TSGGD+RRAIT LQS ARL
Sbjct: 187 KFRFKPLDDSSSTNRLEHIALSEQLRVKPDVFSALISTSGGDLRRAITYLQSAARLSAAS 246
Query: 250 ----GIVNEDVLEVTGVIPNPWIEKL--------------------------LKVDSFQV 279
I D+ E+ GV+P+ I K+ F +
Sbjct: 247 ETETTISPRDIQEIAGVVPDAVINNFARSLGIEVVNTEEGEEMDVDMDADQSTKLKGFDL 306
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
+ + ++ E YSA+Q+ Q HDI++ +L+ +QK+ +AE + L DG+ E +
Sbjct: 307 IRNKVRAMMREGYSASQVLTQLHDIIILHQNLTARQKSKCALVMAEADKALCDGSDEELW 366
Query: 340 ILDLGSIVIKANK 352
+L+ + +K NK
Sbjct: 367 VLE---VALKVNK 376
>gi|302808211|ref|XP_002985800.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
gi|300146307|gb|EFJ12977.1| hypothetical protein SELMODRAFT_123078 [Selaginella moellendorffii]
Length = 345
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 168/330 (50%), Positives = 218/330 (66%), Gaps = 16/330 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
WVEKYRPK + DV Q EVV L L +LPH LFYGPPGTGKTST +A +LFG
Sbjct: 7 WVEKYRPKQVKDVAHQDEVVRTLANALETGNLPHLLFYGPPGTGKTSTALAVTRELFGPQ 66
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+Y+ R+LELNASDDRGI V+R K+K FA A G PCPPFK++ILDEADSMT A
Sbjct: 67 LYKTRVLELNASDDRGINVVRTKIKDFA-AVAVGRGVSDYPCPPFKVIILDEADSMTEDA 125
Query: 154 QAALRRTMEKETKSTRFCLICNYVS--C--------IIQPLTSRCSKFRFKPLAENTMLT 203
Q ALRRTME +K TRFC ICNY+S C II+PL SRC+KFRFK L ++ M
Sbjct: 126 QNALRRTMETYSKVTRFCFICNYISRLCKTIILCFRIIEPLASRCAKFRFKSLNQDVMHG 185
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
R+ +IC +E V +AL TL S GD+RRAIT LQS RL G I ++D+L V+GVI
Sbjct: 186 RILHICSEEGVQMGSEALATLSRVSEGDLRRAITYLQSATRLYGS-SITSKDILSVSGVI 244
Query: 264 PNPWIEKLLKVDS---FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
P+ I+ LL+ + F +K + ++I E Y +Q+F Q +D V+ + +SD+QKA I
Sbjct: 245 PDNVIQSLLQACTSGVFDQAQKEVTNIIAEGYPVSQIFSQVYDHVVESPEISDEQKAKIC 304
Query: 321 EKLAECNARLQDGASEYIQILDLGSIVIKA 350
++LAE + L DGA E +Q++D+ S ++A
Sbjct: 305 QRLAEADKCLLDGADESLQLMDVCSNTMRA 334
>gi|393245398|gb|EJD52908.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 376
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 162/343 (47%), Positives = 222/343 (64%), Gaps = 32/343 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTI+DV Q+ V+VL+K L+ +LPH LFYGPPGTGKTST++A QL+G
Sbjct: 24 PWVEKYRPKTIEDVTAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLYGP 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++R+K+K FA+QT A+ + DG+ PCPP+KI+ILDEADS
Sbjct: 84 DNFRTRVLELNASDERGITIVREKIKDFARQTPRANVASSDGQTYPCPPYKIIILDEADS 143
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRR ME + TRFCL+CNYV+ II+PL SRCSKFRFKPL ++ RL+YI
Sbjct: 144 MTQDAQAALRRIMENYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSSTHGRLEYI 203
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
+QE V +++L+ SGGD+RR+IT LQ+ +RL + I D+ E+ GV+P+ +
Sbjct: 204 AQQEGVNISQDTIKSLIACSGGDLRRSITYLQTASRLANAQPISPRDIQEIAGVVPDVVV 263
Query: 269 E---KLLKVDS------------------------FQVLEKYIEDLILEAYSATQLFDQF 301
+ L VD+ F + K + L+ E YS QL Q
Sbjct: 264 NDFARTLGVDTRYGPTAKADEDSMSVDASAVPDKGFMPVRKKVAALMREGYSGAQLLTQL 323
Query: 302 HDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
HD+++ +++ KQK+ AE + L DGA E + IL++
Sbjct: 324 HDVIIENDNINSKQKSKCALVFAEADKALCDGADEELWILEVA 366
>gi|256053212|ref|XP_002570095.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
gi|350645477|emb|CCD59829.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Schistosoma mansoni]
Length = 362
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 172/365 (47%), Positives = 236/365 (64%), Gaps = 24/365 (6%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
MEAFL TG K P SK + + K +PWVEKYRPKT+ +V Q EVVSVL++C
Sbjct: 1 MEAFL-TG--FKQKPQDSKRRIKS-----QKHIPWVEKYRPKTVGEVAYQTEVVSVLQRC 52
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
+ G+DLP+ LFYGPPGTGKTS ++A QLFG +Y ER+LELNASD+RGI VIR+KVK F
Sbjct: 53 IEGSDLPNLLFYGPPGTGKTSLILALARQLFGPLYSERVLELNASDERGISVIREKVKAF 112
Query: 121 AQ----QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
A + + PP+K++ILDEADSMT AQAALRRTME E ++TRFCL CNY
Sbjct: 113 AHIAVSSSTNSSGSSSTNIPPYKLIILDEADSMTAPAQAALRRTMETEMRTTRFCLTCNY 172
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
V+ II+P+TSRC+KFRF+PL +RL++I + E++ + L+ L+ GD+R+ I
Sbjct: 173 VTRIIEPITSRCAKFRFRPLDNEIARSRLRHIADAENLSITNETLDHLLSLCHGDLRQGI 232
Query: 237 TCLQSCARLKGG---------EGIVNEDVLEVTGVIPNPWIEKLLKVD---SFQVLEKYI 284
T LQ +L I ++++ E V+P+ I+ L+K SF L+ I
Sbjct: 233 TMLQCVHQLILSVDDSDVGCRSSITSKELDEAAAVVPSDLIKSLIKTSENGSFDDLQIII 292
Query: 285 EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
++L+LE YSA Q Q H+ +++ LS QKA ILE +A ++RL DGA EY+Q+L +G
Sbjct: 293 KNLLLEGYSAHQTTYQLHEYIINDEKLSCSQKASILESIAVADSRLIDGADEYLQLLAVG 352
Query: 345 SIVIK 349
++K
Sbjct: 353 GTLLK 357
>gi|351707100|gb|EHB10019.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 361
Score = 318 bits (816), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 176/355 (49%), Positives = 233/355 (65%), Gaps = 39/355 (10%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS----TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + S+ V+ SG+ + KPVPWVEKY PK +D+V Q EVV+
Sbjct: 34 MQAFLKGTSISTKPLSTKDQGVAATAENSGENKKVKPVPWVEKYHPKCVDEVAFQ-EVVA 92
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELN S +RGIQV+R
Sbjct: 93 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAAQELFGPELFRSRVLELNGSGERGIQVVR 152
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ G DGKPCPPFK+VILDEADSMT AAQAALR TME E+K+ RF C
Sbjct: 153 EKVKNFAQLAVPGSRSDGKPCPPFKVVILDEADSMTSAAQAALRYTME-ESKTIRF---C 208
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYV+ II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 209 NYVNRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISNEGIAYLVKVSEGDLRK 268
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSA 294
AIT LQS ++ G SF LE +++LI E ++A
Sbjct: 269 AIT-LQSATQVTSG---------------------------SFDKLEAVVKNLINEGHAA 300
Query: 295 TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
TQL +Q D ++ +LSDKQK+++ EKLAE L DGA E++Q++ L + V++
Sbjct: 301 TQLVNQVRDAIVENDNLSDKQKSIMTEKLAEDGKCLADGADEHLQLISLCATVMQ 355
>gi|29841325|gb|AAP06357.1| similar to GenBank Accession Number BC003335 activator 1; 37 kDa
subunit; replication factor C subunit)(RFC37)in Mus
musculus [Schistosoma japonicum]
Length = 364
Score = 318 bits (815), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 164/337 (48%), Positives = 221/337 (65%), Gaps = 18/337 (5%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRPKTID+V Q EVVSVL++C+ G+DLP+ LFYGPPGTGKTS ++A QL
Sbjct: 23 KHIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQL 82
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQ-------QTASGFNQDGKPCPPFKIVIL 143
FG +Y ER+LELNASD+RGI VIR+KVK FA + PP+K++IL
Sbjct: 83 FGPLYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLIIL 142
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEADSMT AQAALRRTME E ++TRFCL CNYV+ II+P+TSRC+KFRF+PL
Sbjct: 143 DEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARA 202
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--------KGGEGIVNED 255
RL+YI + E++ + L+ L+ GD+R+ IT LQ +L I + +
Sbjct: 203 RLRYIADAENLSVTDETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSLSITSSE 262
Query: 256 VLEVTGVIPNPWIEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLS 312
+ E V+P I+ L+K +F L+ I++L+LE YSA Q Q H+ +++ +LS
Sbjct: 263 LDEAAAVVPTDVIKSLVKTSENGNFDDLQVIIKNLLLEGYSAHQTIYQLHEYIINDETLS 322
Query: 313 DKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
QKA ILE LA ++RL DGA EY+Q+L +G ++K
Sbjct: 323 CIQKASILESLALADSRLIDGADEYLQLLAIGGTLLK 359
>gi|299117347|emb|CBN75303.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 354
Score = 318 bits (815), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 155/322 (48%), Positives = 214/322 (66%), Gaps = 5/322 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+DDV Q EV + LK ++ LPH LFYGPPGTGKTST +A LFG
Sbjct: 29 PWVEKYRPKTVDDVAHQDEVTNTLKGAIATGVLPHLLFYGPPGTGKTSTALALARTLFGP 88
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
D YR+RILELNASD+RGI+V+R+K+KTFAQ +Q G PCPPFK++ILDEAD+MT
Sbjct: 89 DTYRDRILELNASDERGIKVVREKIKTFAQVAVGRATHQAGYPCPPFKVIILDEADTMTP 148
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRRTME + TRFCLICNYV+ II+PL SRC+KFRF L + ML RL YI +
Sbjct: 149 DAQSALRRTMETYSTVTRFCLICNYVTRIIEPLASRCAKFRFSALGQGAMLDRLSYISRE 208
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E V L+ +V+ SGGDMR+A+T +QS ++ G + E ++++ G IP E L
Sbjct: 209 EDVKIAADGLQAIVDLSGGDMRKAVTAMQSASQFYAGAEVTPEVLVDIAGKIPAEVKEAL 268
Query: 272 ---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
+K S+ + ++D + Y + L + + ++ +++ D +KA I ++AE +
Sbjct: 269 WSAIKSGSYNKIVAAVDDFMSSGYPLSTLLEDMQEATVADTTIPDHKKADICRRIAEADR 328
Query: 329 RLQDGASEYIQILDLGSIVIKA 350
L DG +E +Q+LDL S+ ++
Sbjct: 329 CLIDGCNEELQLLDLASVAARS 350
>gi|426200510|gb|EKV50434.1| hypothetical protein AGABI2DRAFT_200125 [Agaricus bisporus var.
bisporus H97]
Length = 349
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 163/326 (50%), Positives = 219/326 (67%), Gaps = 14/326 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTI+DV Q+ ++VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 26 PWVEKYRPKTIEDVSAQEHTIAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D ++ R+LELNASD+RGI ++R+K+K FA+QT A DGK PCPP+KI+ILDEADS
Sbjct: 86 DNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIIILDEADS 145
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRF PL + +RL YI
Sbjct: 146 MTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATSRLTYI 205
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVIP 264
++E + D ++ L+ S GD+RRAIT LQS +RL E + D+ E+ GV+P
Sbjct: 206 AKEEQIDVDTSVIDALITVSNGDLRRAITYLQSASRLSSSSESPENLRPYDIQEIAGVVP 265
Query: 265 NPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
+ + K +F ++K ++ +I E YSATQ+ Q HDIV L+ KQK+ A
Sbjct: 266 DTF-----KKSNFTAIQKNVKAIIREGYSATQILIQLHDIVALHPVLNSKQKSECALVFA 320
Query: 325 ECNARLQDGASEYIQILDLGSIVIKA 350
E + L DG+ E + +L++ + V KA
Sbjct: 321 EADKALCDGSDEELWVLEIATRVNKA 346
>gi|226479998|emb|CAX73295.1| hypothetical protein [Schistosoma japonicum]
Length = 364
Score = 317 bits (813), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 164/337 (48%), Positives = 221/337 (65%), Gaps = 18/337 (5%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRPKTID+V Q EVVSVL++C+ G+DLP+ LFYGPPGTGKTS ++A QL
Sbjct: 23 KHIPWVEKYRPKTIDEVAYQTEVVSVLRRCIGGSDLPNLLFYGPPGTGKTSLILALARQL 82
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQ-------QTASGFNQDGKPCPPFKIVIL 143
FG +Y ER+LELNASD+RGI VIR+KVK FA + PP+K++IL
Sbjct: 83 FGPLYSERVLELNASDERGIVVIREKVKAFAHVAVSSSGSNTNSSGSSSTNIPPYKLIIL 142
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEADSMT AQAALRRTME E ++TRFCL CNYV+ II+P+TSRC+KFRF+PL
Sbjct: 143 DEADSMTAPAQAALRRTMETEMRTTRFCLTCNYVTRIIEPITSRCAKFRFRPLDNEIARA 202
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--------KGGEGIVNED 255
RL+YI + E++ + L+ L+ GD+R+ IT LQ +L I + +
Sbjct: 203 RLRYIADAENLSVTDETLDHLLSLCRGDLRQGITMLQCVHQLIMSVDDSNSNSLSITSSE 262
Query: 256 VLEVTGVIPNPWIEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLS 312
+ E V+P I+ L+K +F L+ I++L+LE YSA Q Q H+ +++ +LS
Sbjct: 263 LDEAAAVVPTDVIKSLVKTSENGNFDDLQVIIKNLLLEGYSAHQTIYQLHECIINDETLS 322
Query: 313 DKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
QKA ILE LA ++RL DGA EY+Q+L +G ++K
Sbjct: 323 CIQKASILESLALADSRLIDGADEYLQLLAIGGTLLK 359
>gi|301117462|ref|XP_002906459.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
gi|262107808|gb|EEY65860.1| replication factor C subunit 4 [Phytophthora infestans T30-4]
Length = 339
Score = 317 bits (812), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 164/344 (47%), Positives = 229/344 (66%), Gaps = 16/344 (4%)
Query: 20 TSVSTSGKTRNKPV-PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTG 78
+S STS PV PWVEKYRPK +D++ Q+ VV+ LK ++ LPH LFYGPPGTG
Sbjct: 3 SSTSTSKTNVPAPVLPWVEKYRPKNVDEISHQEHVVATLKTSIANGQLPHLLFYGPPGTG 62
Query: 79 KTSTMIAACHQLFGDMYRE--RILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDGK 133
KTST++A QLFG +R+ R LELNASDDRGI+V+R+KVK+FAQ +ASG
Sbjct: 63 KTSTIVAVGRQLFGPDFRKNGRFLELNASDDRGIKVVREKVKSFAQGAISSASGL----- 117
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PPFKI++LDEADSMT AQ+ALRR ME +K TRFCLICNYVS II+P+ SRC+KFRF
Sbjct: 118 --PPFKIIVLDEADSMTGDAQSALRRMMENYSKVTRFCLICNYVSRIIEPVASRCAKFRF 175
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
PL + +M +R+++I +E V LE+L+E S GD+R+AI LQS +L G + +
Sbjct: 176 APLEKISMASRVRFIASEERVDVSDSVLESLLECSTGDLRKAINYLQSAKQLCGDDELSQ 235
Query: 254 EDVLEVTGVIPNPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS 310
+DV+ V G+ P +++ + +SF+ ++ IE ++L Y + Q +D V++
Sbjct: 236 DDVIAVAGLAPPELLQQFWVSVTSNSFEKMKTDIESILLAGYPVLTILRQLNDDVLALDK 295
Query: 311 LSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
L+D QKA I ++A + RL DGASE+ Q+LD+ S ++ T+
Sbjct: 296 LNDVQKAQICLRIAGADKRLVDGASEHFQLLDVASYAMRVYHTS 339
>gi|321264422|ref|XP_003196928.1| DNA replication factor (activator 1 subunit) [Cryptococcus gattii
WM276]
gi|317463406|gb|ADV25141.1| DNA replication factor (activator 1 subunit), putative
[Cryptococcus gattii WM276]
Length = 363
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 163/336 (48%), Positives = 217/336 (64%), Gaps = 30/336 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 19 PWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGP 78
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGK--PCPPFKIVILDEAD 147
D++R R+LELNASD+RGI V+R+K+K+FA++T ASG + DGK PCPPFK++ILDEAD
Sbjct: 79 DLFRARVLELNASDERGISVVREKIKSFARETPRHASGVSSDGKEYPCPPFKLIILDEAD 138
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ+ALRR ME +K TRFCL+CNYV+ II+PL SRCSKFRFKPL + + R++
Sbjct: 139 SMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQESTRARMEM 198
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVI 263
I E E V D L ++E +GGD+R+AIT LQ+ RL + + E++GV+
Sbjct: 199 IAENEGVQTDPGVLSLILELAGGDLRKAITYLQTAQRLHSSIEPPTPVSALSIHEISGVV 258
Query: 264 PNPWIEKLLKV-----------------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
P I LL D ++ K +E E +S Q+ +Q HD ++
Sbjct: 259 PEDLITDLLAAMGADRQTGIDPSLARGFDGVKIAVKRVER---EGWSVGQVLEQIHDALI 315
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
S+ QK+L +AEC+ L +G E +Q+LD
Sbjct: 316 PIPSIPAVQKSLAGIAIAECDKGLCEGGDEELQLLD 351
>gi|392595637|gb|EIW84960.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 369
Score = 315 bits (807), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 164/340 (48%), Positives = 218/340 (64%), Gaps = 29/340 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTID+V Q+ V+VL+K L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 21 PWVEKYRPKTIDEVSAQEHAVAVLRKTLFSTNLPHMLFYGPPGTGKTSTILALARQLFGP 80
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASDDRGI ++R+K+K FA+QT A DGK PCPP+KI+ILDEADS
Sbjct: 81 DNFRNRVLELNASDDRGISIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIIILDEADS 140
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRF PL ++ RL +I
Sbjct: 141 MTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSTSNRLSHI 200
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE----GIVNEDVLEVTGVIP 264
QE V + ++ L++TS GD+RR+IT LQS +RL I D+ E+ GV+P
Sbjct: 201 AAQEHVDVSPEVIQALIDTSSGDLRRSITYLQSASRLSASSEPPTPITARDIQEIAGVVP 260
Query: 265 NPWIEKL-----------LKVDS---------FQVLEKYIEDLILEAYSATQLFDQFHDI 304
N + + VDS F + K ++++I + YSA+Q+ Q HD+
Sbjct: 261 NGVMLDFACALGIEFSGDMDVDSDTDRGRKRDFDGIRKKVKEVIRQGYSASQILLQLHDL 320
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
V+ +L +QKA +E + L DGA E + +L++G
Sbjct: 321 VILHPTLPARQKARCALIFSEADKALCDGADEELWVLEIG 360
>gi|409082644|gb|EKM83002.1| hypothetical protein AGABI1DRAFT_69120 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 372
Score = 314 bits (805), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 162/344 (47%), Positives = 218/344 (63%), Gaps = 27/344 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTI+DV Q+ V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 26 PWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D ++ R+LELNASD+RGI ++R+K+K FA+QT A DGK PCPP+KI+ILDEADS
Sbjct: 86 DNFKNRVLELNASDERGISIVREKIKNFARQTPRAQAVASDGKTYPCPPYKIIILDEADS 145
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRF PL + +RL YI
Sbjct: 146 MTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSESATSRLTYI 205
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQ----SCARLKGGEGIVNEDVLEVTGVIP 264
++E + D ++ L+ S GD+RRAIT LQ + + E + D+ E+ GV+P
Sbjct: 206 AKEEQIDVDTSVIDALITVSNGDLRRAITYLQSASRLSSSSESTENLRPYDIQEIAGVVP 265
Query: 265 NPWIEKL------------------LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
+ I + K +F ++K ++ +I E YSATQ+ Q HDIV
Sbjct: 266 DTVINQFARTIGIEIDDGDMNVDEEFKKSNFTAIQKNVKAIIREGYSATQILIQLHDIVA 325
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
L+ KQK+ AE + L DG+ E + +L++ + V KA
Sbjct: 326 LHPVLNSKQKSECALVFAEADKALCDGSDEELWVLEIATRVNKA 369
>gi|190409543|gb|EDV12808.1| replication factor C subunit 2 [Saccharomyces cerevisiae RM11-1a]
Length = 353
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 160/321 (49%), Positives = 217/321 (67%), Gaps = 11/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPN 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
IE + KV S F ++KY+ + +SAT + +Q H+ ++ + K I
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSATSVVNQLHEYYITNDNFDTNFKNQISWL 325
Query: 323 LAECNARLQDGASEYIQILDL 343
L ++RL +G +E+IQ+L+L
Sbjct: 326 LFTTDSRLNNGTNEHIQLLNL 346
>gi|388583076|gb|EIM23379.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 152/318 (47%), Positives = 215/318 (67%), Gaps = 9/318 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+TI+DV Q + VLKK L A+LPH LFYGPPGTGKTST++A QLFG
Sbjct: 8 PWVEKYRPRTIEDVAAQDHTIRVLKKQLGNANLPHMLFYGPPGTGKTSTILALSRQLFGQ 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D+ + R+LELNASD+RGI V+R+K+K FA+Q P +KI+ILDEADSMT
Sbjct: 68 DLVKSRVLELNASDERGINVVREKIKNFAKQAPKA--STSASVPAYKIIILDEADSMTQD 125
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTME +KSTRFCL+CNYV+ II+P+ SRCSKFRFKPL E+ RL+YI ++E
Sbjct: 126 AQSALRRTMETYSKSTRFCLVCNYVTRIIEPVASRCSKFRFKPLDESDSKARLEYIAQEE 185
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVTGVIPNPWIEK 270
++ + ++ L++ + GD+R+AIT LQS ARL I + + E+ G IP I+
Sbjct: 186 NIPLNEGVIDALIDNTHGDLRQAITYLQSAARLHQASNSAITVDTITEIAGTIPENIIDN 245
Query: 271 LLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
+++V +F+ ++ I+ + L Y++ Q+ Q HD + +S+SD K+ + +AE
Sbjct: 246 IIQVCSNKKNFKEIQSTIKQIHLFGYASAQVLLQLHDKFIENTSISDTSKSKAILSIAEA 305
Query: 327 NARLQDGASEYIQILDLG 344
+ L DGA + +Q+L+L
Sbjct: 306 DKALTDGADDELQLLNLA 323
>gi|260939858|ref|XP_002614229.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
gi|238852123|gb|EEQ41587.1| hypothetical protein CLUG_05714 [Clavispora lusitaniae ATCC 42720]
Length = 339
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 156/330 (47%), Positives = 218/330 (66%), Gaps = 8/330 (2%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
+S+ + R PWVEKYRPK +DDV Q V VL+K L A+LPH LFYGPPGTGKTS
Sbjct: 1 MSSYDQERLDHTPWVEKYRPKKLDDVASQDHAVRVLQKTLQSANLPHMLFYGPPGTGKTS 60
Query: 82 TMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPP 137
T++A QL+G +YR R+LELNASD+RGI ++R K+K FA+ T S + + PCPP
Sbjct: 61 TVLALAKQLYGPRLYRSRVLELNASDERGISIVRQKIKNFARLTVSNPSPEDLREYPCPP 120
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+KI+ILDEADSMT+ AQ+ALRRTME + TRFCLICNY++ II PL SRCSKFRF+ L
Sbjct: 121 YKIIILDEADSMTNDAQSALRRTMENYSGVTRFCLICNYITRIIDPLASRCSKFRFRSLD 180
Query: 198 ENTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDV 256
L+RL+Y+ EQE + + L ++ SGGD+R+AIT LQS R G+ + +
Sbjct: 181 GENALSRLRYVVEQEHIPLASDSVLNDILAVSGGDLRKAITYLQSATRSGDAGGVSSAKI 240
Query: 257 LEVTGVIPNPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 313
E++GV+ + +E L ++ + + + + ++D +LE +SA Q Q HD+ + +LS
Sbjct: 241 KEISGVVDDASMETLVGAIRAKNPKQIAQVVKDTVLEGWSAQQTAAQLHDVFLLDDALSS 300
Query: 314 KQKALILEKLAECNARLQDGASEYIQILDL 343
++K I L E + RL G E+IQ+L+L
Sbjct: 301 QEKNDIARLLFETDKRLNSGTDEHIQLLNL 330
>gi|384252312|gb|EIE25788.1| putative replication factor C 37 kDa subunit [Coccomyxa
subellipsoidea C-169]
Length = 329
Score = 313 bits (803), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 157/321 (48%), Positives = 217/321 (67%), Gaps = 6/321 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWV+KYRPK++++V Q+EVV L+K L A+LPH LFYGPPGTGKTST +A QL+G
Sbjct: 7 PWVDKYRPKSVNEVAHQEEVVHTLQKALESANLPHLLFYGPPGTGKTSTALAMARQLYGP 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+ ELNASD+RGI V+R+K+K+FA T+ G G PCPPFK++ILDEAD+MT
Sbjct: 67 ELAKARVKELNASDERGINVVREKIKSFAA-TSVGQPVPGYPCPPFKLLILDEADAMTQD 125
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +K TRF ICNYVS II+PL SRC+KFRF+PL M R+ +IC +E
Sbjct: 126 AQNALRRTMEAHSKVTRFIFICNYVSRIIEPLASRCAKFRFRPLHGGIMSARISHICNEE 185
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
V A+ETL + SGGD+R+AIT LQS RLKG + + + +L+V+G +P + LL
Sbjct: 186 GVQLQEGAMETLGKVSGGDLRKAITTLQSAVRLKGLQ-VEPQTLLDVSGAVPESVTQSLL 244
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ + ++ I D I + + A QL +F ++ +L D Q+A I LAE +
Sbjct: 245 QACRTRTVSSVQAAITDAIADGWGAQQLLLEFQAGLLKDQTLKDPQRARICTVLAEADKC 304
Query: 330 LQDGASEYIQILDLGSIVIKA 350
L DGA E++Q+L + S+ +A
Sbjct: 305 LVDGADEFLQLLHVASVAQQA 325
>gi|344229660|gb|EGV61545.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 359
Score = 313 bits (802), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 163/344 (47%), Positives = 220/344 (63%), Gaps = 29/344 (8%)
Query: 28 TRNKP--------VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
TRNK PWVEKYRPK++DDV Q V VLK+ L A+LPH LFYGPPGTGK
Sbjct: 9 TRNKAYEQEKIEHTPWVEKYRPKSLDDVASQDHTVKVLKRTLVSANLPHMLFYGPPGTGK 68
Query: 80 TSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPC 135
TST++A L+G +++ R+LELNASD+RGI ++R K+K FA+ T S + + PC
Sbjct: 69 TSTILALAKSLYGPILFKSRVLELNASDERGISIVRQKIKNFARLTISNPSPEDLEKYPC 128
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
PP+KI+ILDEADSMT+ AQ+ALRRTME + TRFCL+CNY++ II PL SRCSKFRFKP
Sbjct: 129 PPYKIIILDEADSMTNDAQSALRRTMETYSGVTRFCLVCNYITRIIDPLASRCSKFRFKP 188
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L + L RLQYI E + + LE +++ S GD+RRAIT LQS RL ++ ED
Sbjct: 189 LNNSDALGRLQYIAGHEGIEAEEGTLEEVLKISNGDLRRAITYLQSATRLHSSLKLLEED 248
Query: 256 ------------VLEVTGVIPNPWIEKLLKV----DSFQVLEKYIEDLILEAYSATQLFD 299
+LEV GV+ + I+K+L DS +++E+ +++L+ YSA Q+ D
Sbjct: 249 ISIGTNKITVDSILEVGGVVSDEIIDKILSTIESKDSKEIIEE-TRNVVLQGYSAQQVID 307
Query: 300 QFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
Q HD ++ S S K + + L + RL G E+IQ+L+L
Sbjct: 308 QLHDKLIMDDSRSSIVKNHVSQLLFTTDKRLNSGTDEHIQLLNL 351
>gi|346321024|gb|EGX90624.1| activator 1 41 kDa subunit [Cordyceps militaris CM01]
Length = 382
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 161/339 (47%), Positives = 221/339 (65%), Gaps = 30/339 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK++DD+ Q+ V+VL++ L A+LPH LFYGPPGTGKTST++A QL+G
Sbjct: 34 PWVEKYRPKSLDDIAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYGP 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ----QTASGFNQDGKPCPPFKIVILDEADS 148
+M + R+LELNASD+RGI ++RDKVK FA+ +G+ +D PCPPFKI+ILDEADS
Sbjct: 94 EMMKSRVLELNASDERGISIVRDKVKNFARMQLTNPPAGY-RDKYPCPPFKIIILDEADS 152
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + + RL+ I
Sbjct: 153 MTQDAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAKKRLEEI 212
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG-----------------EGI 251
ESV D A++ L+ S GD+R+A+T LQS ARL G + I
Sbjct: 213 ATAESVPVDDGAIDALIRCSEGDLRKAVTFLQSAARLVGAGAQPKDSDGDDDMEVDKKAI 272
Query: 252 VNEDVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
+ + ++ GVIP+ I++L+ S+ + K +ED++ + +SA Q+ Q + +
Sbjct: 273 TVKIIEDIAGVIPSKTIDELVAALRPRGSNGSYAGVSKVVEDMVADGWSAGQVVSQLYQV 332
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
V ++ D QK I+ +E + RL DGA E++ ILDL
Sbjct: 333 VTFDETIPDVQKNKIVMVFSEVDKRLLDGADEHLSILDL 371
>gi|403216588|emb|CCK71084.1| hypothetical protein KNAG_0G00260 [Kazachstania naganishii CBS
8797]
Length = 350
Score = 313 bits (802), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 159/332 (47%), Positives = 221/332 (66%), Gaps = 14/332 (4%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
+T K NKP WVEKYRPK +D+V Q V+VLKK L ADLPH LFYGPPGTGKTST
Sbjct: 15 NTESKEENKP--WVEKYRPKNLDEVTAQDHAVNVLKKTLKSADLPHMLFYGPPGTGKTST 72
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPF 138
++A +LFG ++ + R+LELNASD+RGI ++R+KVK FA+ T S +++ PCPPF
Sbjct: 73 ILALTKELFGPELTKSRVLELNASDERGISIVREKVKNFARLTVSKPSKNDLEKYPCPPF 132
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
KI+ILDEADSMT AQ+ALRRTME + TRFCLICNY++ II PL SRCSKFRFK L E
Sbjct: 133 KIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYITRIIDPLASRCSKFRFKSLDE 192
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK---GGEGIVNED 255
+ + RLQY+ +QESV+C+ ALE ++ S GD+R+AIT LQS ++L+ G + + ++
Sbjct: 193 SNAMDRLQYVAKQESVICEDGALEKILIVSSGDLRKAITLLQSSSKLRNYTGTDKVTSKQ 252
Query: 256 VLEVTGVIPN----PWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 311
V E+ G +PN +EK+ D + Y+ + +S + Q HD + + +
Sbjct: 253 VEELAGRVPNDILGELVEKIASKD-LDAIIAYVNNFAKSGWSGVSVISQLHDYYIMSDNF 311
Query: 312 SDKQKALILEKLAECNARLQDGASEYIQILDL 343
K I L + +A+L +G +E++Q+L+L
Sbjct: 312 DTAFKNRISLILFDTDAKLTNGTNEHLQLLNL 343
>gi|328860731|gb|EGG09836.1| hypothetical protein MELLADRAFT_47409 [Melampsora larici-populina
98AG31]
Length = 382
Score = 313 bits (802), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 221/354 (62%), Gaps = 33/354 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK I+ V Q VL K L ADLPH LFYGPPGTGKTST++A +LFG
Sbjct: 30 LPWVEKYRPKNIESVEGQDATTRVLAKTLHRADLPHMLFYGPPGTGKTSTILALARELFG 89
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ + R+LELNASD+RGI V+RDK+K+FA+ + S + PCPPFKI+ILDEADSMT
Sbjct: 90 PELMKSRVLELNASDERGISVVRDKIKSFAKVSISPAT-NAYPCPPFKIIILDEADSMTQ 148
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRR ME +K TRFCLICNYV+ II+P+ SRCSKFRF PL+ L+RL IC
Sbjct: 149 DAQSALRRIMENYSKITRFCLICNYVTRIIEPIVSRCSKFRFTPLSSTDTLSRLNEICRL 208
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG-------IVNEDVLEVTGVIP 264
E+V L +L++ S GD+RR+IT LQS ++L+ G I EDV E+ GVIP
Sbjct: 209 ENVKVAEPVLASLIKVSDGDLRRSITFLQSASKLRNGSSADDEAGEITQEDVEEIGGVIP 268
Query: 265 NPWIEKLLKV------------------------DSFQVLEKYIEDLILEAYSATQLFDQ 300
+ I KL+K F+ + + +E L+ + YS+ QL Q
Sbjct: 269 DTEIRKLMKTMGIDVEADGDVTMADGNTRGKTRQTPFEKIAEAVELLMRQGYSSVQLISQ 328
Query: 301 FHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
HD+++ + + + K +I L E + RL DGA E +Q+L L + KA +++
Sbjct: 329 LHDLILLDTLIPPRCKTMISIALGETDKRLNDGAEEELQVLSLCLKIWKAMQSS 382
>gi|345566715|gb|EGX49657.1| hypothetical protein AOL_s00078g146 [Arthrobotrys oligospora ATCC
24927]
Length = 387
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 160/344 (46%), Positives = 220/344 (63%), Gaps = 31/344 (9%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
++PVPWVEKYRPKT+ DV Q VSVL++ L ++LPH LFYGPPGTGKTST++A +
Sbjct: 32 DRPVPWVEKYRPKTLSDVTAQDHTVSVLRRTLQSSNLPHMLFYGPPGTGKTSTILALAKE 91
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDGKPCPPFKIVILDE 145
L+G ++ + R+LELNASD+RGI ++R+KVK FA+ T + N PCPP+KI+ILDE
Sbjct: 92 LYGPELMKTRVLELNASDERGISIVREKVKNFAKIAVSTTTAANASKYPCPPYKIIILDE 151
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
ADSMTH AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFKPL E RL
Sbjct: 152 ADSMTHDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKPLDEGNTRLRL 211
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL------------------KG 247
I E E V ++TL++ + GD+R+AIT LQS A+L KG
Sbjct: 212 SSIAEAEGVKYQEGVVDTLIKVADGDLRKAITFLQSAAKLHGAVKERTGDDMEVDSGAKG 271
Query: 248 GEGIVNEDVLEVTGVIPNPWIEKLLKV--------DSFQVLEKYIEDLILEAYSATQLFD 299
GE I + E+ GVIP I+ L++ + + ++D++ + +SA Q+
Sbjct: 272 GE-ITVRSIEEIAGVIPEKTIDDLMQSMEPRPHGQAVYTPVATIVQDIVADGWSAAQVLL 330
Query: 300 QFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
Q ++ ++ + L+ QK I+ +E + RL DGA E++ ILD+
Sbjct: 331 QLYNRLVFSDMLTGNQKNQIVAIFSEIDKRLVDGADEHLVILDM 374
>gi|342876153|gb|EGU77811.1| hypothetical protein FOXB_11675 [Fusarium oxysporum Fo5176]
Length = 382
Score = 313 bits (801), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 168/362 (46%), Positives = 231/362 (63%), Gaps = 42/362 (11%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
+D PS+++T PWVEKYRPKT+ DV Q V VL++ L ++LPH LF
Sbjct: 24 QDKPSNARTQ------------PWVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLF 71
Query: 72 YGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ----QTAS 126
YGPPGTGKTST++A +L+G DM + R+LELNASD+RGI ++R+KVK FA+ A
Sbjct: 72 YGPPGTGKTSTVLALAKELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPAP 131
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
G+ +D PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL S
Sbjct: 132 GY-KDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLAS 190
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL- 245
RCSKFRFK L ++ RL+ I E+E V + A++ L++ S GD+R+AIT LQS ARL
Sbjct: 191 RCSKFRFKSLDQSNAKRRLEEIAEKEGVALEDGAVDALIKCSEGDLRKAITFLQSAARLV 250
Query: 246 ------KGGEG--IVNED--------VLEVTGVIPNPWIEKLLKV-------DSFQVLEK 282
K EG +++ D V ++ GVIP+ I+ L+K S+Q++
Sbjct: 251 SANAPDKEAEGDEVMDVDKKAVTVKIVEDIAGVIPDTTIDDLVKAIRPKRSGSSYQIISD 310
Query: 283 YIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
+E L+ + +SA Q+ +Q + + ++ D QK I+ +E + RL DGA E++ ILD
Sbjct: 311 VVEKLVADGWSAGQVVNQLYQALTYDETIPDAQKNKIVLVFSEVDKRLVDGADEHLSILD 370
Query: 343 LG 344
L
Sbjct: 371 LS 372
>gi|392567387|gb|EIW60562.1| replication factor C [Trametes versicolor FP-101664 SS1]
Length = 379
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 166/351 (47%), Positives = 220/351 (62%), Gaps = 34/351 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTI+DV Q+ V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 25 PWVEKYRPKTIEDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 84
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
+ +R R+LELNASD+RGI ++R+K+K FA+QT A + DG PCPP+KI+ILDEADS
Sbjct: 85 ENFRSRVLELNASDERGISIVREKIKNFARQTPRAQAVSADGTVYPCPPYKIIILDEADS 144
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRR ME + TRFCL+CNYV+ II+PL SRCSKFRFKPL + R+ +
Sbjct: 145 MTQDAQAALRRIMELYARITRFCLVCNYVTRIIEPLASRCSKFRFKPLDPASTSARIAQV 204
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE----GIVNEDVLEVTGVIP 264
E+V + ++ L+ TS GD+RRAIT LQS +RL I DV E+ GV+P
Sbjct: 205 ASAENVPVTPETVDALISTSQGDLRRAITYLQSASRLALASTPPTSITARDVQEIAGVVP 264
Query: 265 NPWIEKL-----------------LKVD--------SFQVLEKYIEDLILEAYSATQLFD 299
+ IE L+VD F + + ++I E YSA+Q+
Sbjct: 265 DAVIEGFAAALGVERMGGDGMDVDLEVDEKGEFKAKGFDGVRAKVREIIREGYSASQIIS 324
Query: 300 QFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
Q HD V+ +LS +QK+ AE + L DGA E + IL++G + +A
Sbjct: 325 QLHDYVIMHPTLSARQKSRAALVFAEADKALCDGADEELWILEVGLRIHRA 375
>gi|405124075|gb|AFR98837.1| activator 1 41 kda subunit [Cryptococcus neoformans var. grubii
H99]
Length = 363
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 162/336 (48%), Positives = 215/336 (63%), Gaps = 30/336 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 19 PWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGP 78
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGK--PCPPFKIVILDEAD 147
D++R R+LELNASD+RGI V+R+K+K+FA++T A G + DGK PCPPFK++ILDEAD
Sbjct: 79 DLFRARVLELNASDERGISVVREKIKSFARETPRHAPGISSDGKEYPCPPFKLIILDEAD 138
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ+ALRR ME +K TRFCL+CNYV+ II+PL SRCSKFRFKPL + + R++
Sbjct: 139 SMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQGSTRARMEM 198
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVI 263
I E E V D + ++E +GGD+R+AIT LQ+ RL + + E++GV+
Sbjct: 199 IAENEGVQTDPGVISLILELAGGDLRKAITYLQTAQRLHSSIEPPTPVSALSIHEISGVV 258
Query: 264 PNPWIEKLLKV-----------------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
P I LL D V K +E E +S Q+ +Q HD ++
Sbjct: 259 PEDLITDLLAAMGVDRQIGIDRSLARGFDGVMVAVKRVER---EGWSVGQVLEQIHDALI 315
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
S+ QK+L +AEC+ L +G E +Q+LD
Sbjct: 316 PIPSIPAVQKSLAGIAIAECDKGLCEGGDEELQLLD 351
>gi|330845966|ref|XP_003294831.1| replication factor C subunit [Dictyostelium purpureum]
gi|325074630|gb|EGC28646.1| replication factor C subunit [Dictyostelium purpureum]
Length = 344
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 156/334 (46%), Positives = 219/334 (65%), Gaps = 12/334 (3%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T+ + + PWV KYRPKT+DDV Q +VVS LKK LS +LPH LFYGPPGTGKTST+
Sbjct: 2 TTASKKERSEPWVSKYRPKTMDDVSYQDDVVSALKKSLSTGNLPHLLFYGPPGTGKTSTI 61
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFA----QQTASGFNQDGKPCPPF 138
+A ++G ++ ++R+LELNASD+RGI+++R K+K FA +T S N G F
Sbjct: 62 LAIAMDIYGPELIKQRVLELNASDERGIEIVRTKIKNFAGFTVNKTVSNGNNAG---ATF 118
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
K++ILDEADSMT AQAALRRT+E +K+TRFCL+CNY+S II PL SRC+KFRFKPL
Sbjct: 119 KLIILDEADSMTSDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDS 178
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258
+ RL+YI QE + C + + S GDMR+AIT LQS R G + + + +
Sbjct: 179 EATIERLKYISIQEGIKCTDSVYQAIQTVSDGDMRKAITYLQSAFRFYGNK-LTEDTIYN 237
Query: 259 VTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 315
++G + I L+ K +SF+ L+ ++ +I + Y +Q+ Q D V+S S +DKQ
Sbjct: 238 ISGTLSPLIITSLIKSCKSNSFKDLQSTVQSIISQGYPVSQVVSQLFDFVLSDSKFNDKQ 297
Query: 316 KALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
K+LI K+ + L DG+ E++Q+LDL S ++K
Sbjct: 298 KSLISMKIGNVDRNLIDGSEEFLQLLDLSSYIMK 331
>gi|50424927|ref|XP_461055.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
gi|49656724|emb|CAG89431.1| DEHA2F16016p [Debaryomyces hansenii CBS767]
Length = 368
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/338 (47%), Positives = 218/338 (64%), Gaps = 29/338 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DDV Q V +LKK L A+LPH LFYGPPGTGKTST++A QL+G
Sbjct: 24 PWVEKYRPKNLDDVASQDHAVKILKKTLESANLPHMLFYGPPGTGKTSTILALAKQLYGP 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
+Y+ R+LELNASD+RGI ++R K+K FA+ T S +++ PCPP+KI+ILDEADSM
Sbjct: 84 HLYKSRVLELNASDERGISIVRQKIKNFARLTISNPSKEDLENYPCPPYKIIILDEADSM 143
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME + TRFCLICNY++ II PL SRCSKFRF+ L + L RL+YI
Sbjct: 144 TNDAQSALRRTMENYSGVTRFCLICNYITRIIDPLASRCSKFRFRLLNNSNALNRLKYIV 203
Query: 210 EQESVMCDFK-ALETLVETSGGDMRRAITCLQSCARLKGG-------------------E 249
QE + D + LE ++ S GD+R+AIT LQS ARL
Sbjct: 204 GQEEIALDNEDVLEEVLNISNGDLRKAITYLQSAARLHASFNNRIDANGDIEMVDADTKS 263
Query: 250 GIVNEDVLEVTGVIPNPWIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
I + V E+ GV+P +++++ +D+ +L+K IE+++L+ +SA Q+ DQ HD
Sbjct: 264 KITQDSVQEIAGVLPEASLDQIISAIESLDTRTILQK-IEEIVLQGWSAQQVVDQLHDKF 322
Query: 306 MSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ SL K I + L E + +L +G E+IQ+L+L
Sbjct: 323 ILNDSLESSTKNKIAKILFETDRKLNNGTDEHIQLLNL 360
>gi|328870657|gb|EGG19030.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 358
Score = 312 bits (799), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 157/345 (45%), Positives = 225/345 (65%), Gaps = 8/345 (2%)
Query: 11 GKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFL 70
GK+ S+S S+ SG + P PWV KYRP+T+DDV Q EVV LKK L G LPH L
Sbjct: 8 GKNT-SNSAPSIG-SGGIQKAPEPWVSKYRPRTVDDVAHQDEVVRALKKSLDGGALPHLL 65
Query: 71 FYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN 129
FYGPPGTGKTST++A L+G D+ ++R+LELNASD+RGI+++R K+K FA T +
Sbjct: 66 FYGPPGTGKTSTILAIAMDLYGPDLIKDRVLELNASDERGIEIVRTKIKNFASFTVNNTT 125
Query: 130 QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
GK P FK++ILDEADSMT AQAALRRT+E +K+TRFCL+CNY++ II+PL+SRC+
Sbjct: 126 VAGKQVPSFKLIILDEADSMTQDAQAALRRTIENTSKTTRFCLLCNYITRIIEPLSSRCA 185
Query: 190 KFRFKPLAENTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
KFRFKPL M RL+YI +QE V + + L+ + S GDMR+AIT +QS R
Sbjct: 186 KFRFKPLKSEAMGERLKYIADQEGVNLANESTLDAIHTVSQGDMRKAITFMQSAHRFYAS 245
Query: 249 EGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+ I + ++ +++G + +E + K F + +E ++ Y A+Q+ Q DIV
Sbjct: 246 KSITDANIYDISGSVEPKTLELFINSCKSGDFYKVRHLVERVMALGYPASQIISQLFDIV 305
Query: 306 MSAS-SLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+ S ++ Q+ I K+ + + L DG+ E++Q+ DLG+ ++K
Sbjct: 306 VQPSIHFNNIQRTKIAIKIGQIDRNLVDGSDEFLQLFDLGAYMMK 350
>gi|151945136|gb|EDN63387.1| replication factor C subunit 2 [Saccharomyces cerevisiae YJM789]
gi|256273083|gb|EEU08038.1| Rfc2p [Saccharomyces cerevisiae JAY291]
gi|259147531|emb|CAY80782.1| Rfc2p [Saccharomyces cerevisiae EC1118]
gi|323336956|gb|EGA78213.1| Rfc2p [Saccharomyces cerevisiae Vin13]
gi|323347871|gb|EGA82132.1| Rfc2p [Saccharomyces cerevisiae Lalvin QA23]
gi|349579253|dbj|GAA24416.1| K7_Rfc2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365764724|gb|EHN06245.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/321 (49%), Positives = 216/321 (67%), Gaps = 11/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPN 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
IE + KV S F ++KY+ + +SA + +Q H+ ++ + K I
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWL 325
Query: 323 LAECNARLQDGASEYIQILDL 343
L ++RL +G +E+IQ+L+L
Sbjct: 326 LFTTDSRLNNGTNEHIQLLNL 346
>gi|323308474|gb|EGA61719.1| Rfc2p [Saccharomyces cerevisiae FostersO]
Length = 353
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/321 (49%), Positives = 216/321 (67%), Gaps = 11/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKIFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPN 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+
Sbjct: 206 EQENVKCDDGVLEXILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
IE + KV S F ++KY+ + +SA + +Q H+ ++ + K I
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWL 325
Query: 323 LAECNARLQDGASEYIQILDL 343
L ++RL +G +E+IQ+L+L
Sbjct: 326 LFTTDSRLNNGTNEHIQLLNL 346
>gi|45269731|gb|AAS56246.1| YJR068W [Saccharomyces cerevisiae]
Length = 353
Score = 311 bits (798), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 159/321 (49%), Positives = 216/321 (67%), Gaps = 11/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPN 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
IE + KV S F ++KY+ + +SA + +Q H+ ++ + K I
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWL 325
Query: 323 LAECNARLQDGASEYIQILDL 343
L ++RL +G +E+IQ+L+L
Sbjct: 326 LFTTDSRLNNGTNEHIQLLNL 346
>gi|398365131|ref|NP_012602.3| Rfc2p [Saccharomyces cerevisiae S288c]
gi|730502|sp|P40348.1|RFC2_YEAST RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2; AltName: Full=Activator 1 41 kDa subunit
gi|498463|dbj|BAA05858.1| Rfc2 protein [Saccharomyces cerevisiae]
gi|841464|gb|AAC49061.1| Rfc2p [Saccharomyces cerevisiae]
gi|1015747|emb|CAA89596.1| RFC2 [Saccharomyces cerevisiae]
gi|1019690|gb|AAB39294.1| ORF YJR068w [Saccharomyces cerevisiae]
gi|285812957|tpg|DAA08855.1| TPA: Rfc2p [Saccharomyces cerevisiae S288c]
gi|392298494|gb|EIW09591.1| Rfc2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 353
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 159/321 (49%), Positives = 216/321 (67%), Gaps = 11/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPN 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
IE + KV S F ++KY+ + +SA + +Q H+ ++ + K I
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWL 325
Query: 323 LAECNARLQDGASEYIQILDL 343
L ++RL +G +E+IQ+L+L
Sbjct: 326 LFTTDSRLNNGTNEHIQLLNL 346
>gi|400601260|gb|EJP68903.1| replication factor C [Beauveria bassiana ARSEF 2860]
Length = 382
Score = 311 bits (798), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 162/339 (47%), Positives = 221/339 (65%), Gaps = 30/339 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK++DDV Q+ V+VL++ L A+LPH LFYGPPGTGKTST++A QL+G
Sbjct: 34 PWVEKYRPKSLDDVAAQEHTVTVLQRTLQAANLPHMLFYGPPGTGKTSTILALAKQLYGP 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ----QTASGFNQDGKPCPPFKIVILDEADS 148
+M + R+LELNASD+RGI ++R+KVK FA+ +G+ + PCPPFKI+ILDEADS
Sbjct: 94 EMMKSRVLELNASDERGISIVREKVKNFARMQLTNPPAGYREK-YPCPPFKIIILDEADS 152
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + + + RL+ I
Sbjct: 153 MTQDAQSALRRTMEIYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGSAMKRLEEI 212
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG-------GEGIVNEDV----- 256
ESV A++ LV S GD+R+A+T LQS ARL G G+G + DV
Sbjct: 213 AAAESVPLGDGAIDALVRCSEGDLRKAVTFLQSAARLIGAGAQVKDGDGDEDMDVDKKAV 272
Query: 257 -----LEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
++ GVIP I++L+ S+ + K +ED++ + +SA Q+ Q + +
Sbjct: 273 TVKIIEDIAGVIPGATIDELVAALRPRGSNGSYSSVSKVVEDMVADGWSAGQIVSQLYQV 332
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ ++ D QK I+ +E + RL DGA E++ ILDL
Sbjct: 333 ITFDETIPDVQKNKIVMVFSEVDKRLLDGADEHLSILDL 371
>gi|336367142|gb|EGN95487.1| hypothetical protein SERLA73DRAFT_60040 [Serpula lacrymans var.
lacrymans S7.3]
gi|336379860|gb|EGO21014.1| hypothetical protein SERLADRAFT_372826 [Serpula lacrymans var.
lacrymans S7.9]
Length = 372
Score = 311 bits (797), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 164/345 (47%), Positives = 221/345 (64%), Gaps = 28/345 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 23 PWVEKYRPKTIDDVSAQEHTVAVLRKTLTSTNLPHMLFYGPPGTGKTSTILALSRQLFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++R+K+K FA+QT A DGK PCPP+KI+ILDEADS
Sbjct: 83 DNFRNRVLELNASDERGISIVREKIKNFARQTPRAQMVASDGKTYPCPPYKIIILDEADS 142
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR ME + TRFCL+CNYV+ II+PL SRCSKFRF PL ++ +RL I
Sbjct: 143 MTQDAQGALRRIMETYARITRFCLVCNYVTRIIEPLASRCSKFRFTPLDSSSTSSRLSQI 202
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTGVIP 264
E V+ + + L+ TS GD+RR+IT LQS +RL I D+ E+ GV+P
Sbjct: 203 ATAEHVVLEPDVISALINTSSGDLRRSITYLQSASRLSASTNPPTPITAGDIQEIAGVVP 262
Query: 265 NPWIEKLLK-----------VDS--------FQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+ + K VD+ F ++ +++L+ + YSA+Q+ Q HDIV
Sbjct: 263 DAVVHDFAKTLGVEIVGDMDVDNDGRKKTRGFDAVQAKVKELMRQGYSASQIVSQLHDIV 322
Query: 306 MSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
+ +L +QK++ AE + + DGA E + IL++G + KA
Sbjct: 323 ILHPTLHARQKSICALAFAEADKAICDGADEELWILEVGLRIHKA 367
>gi|310790808|gb|EFQ26341.1| replication factor C [Glomerella graminicola M1.001]
Length = 383
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 168/362 (46%), Positives = 232/362 (64%), Gaps = 28/362 (7%)
Query: 11 GKDAPSSSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
+ A +++ TS K+ P PWVEKYRPKT+ DV Q V+VL++ L ++LPH
Sbjct: 9 ARKAAAANGTSAQKQEKSAQPPRAQPWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPH 68
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTAS 126
LFYGPPGTGKTST++A +L+G +M + R+LELNASD+RGI ++R+KVK FA+ Q +
Sbjct: 69 MLFYGPPGTGKTSTVLALAKELYGPEMIKSRVLELNASDERGISIVREKVKDFARMQLTN 128
Query: 127 GFNQDGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
N+ K PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL
Sbjct: 129 PTNEYKKRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 188
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRCSKFRFK L + RL I E E V + A++ L++ S GD+R+AIT LQS AR
Sbjct: 189 ASRCSKFRFKSLDQGNAKKRLGDIAENEGVQLEDGAVDALIKCSEGDLRKAITYLQSAAR 248
Query: 245 LKG-------GEGIVNED--------VLEVTGVIPNPWIEKLLK-------VDSFQVLEK 282
L G G+ ++ D V ++ GVIP I++L+ VD++Q + K
Sbjct: 249 LVGAGDKDTSGDDAMDVDKRPVTVKIVEDIAGVIPENTIDELVSAIRPQGTVDTYQTVAK 308
Query: 283 YIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
+ED++ + +SA Q+ Q + ++ ++ D QK I+ +E + RL DGA E++ ILD
Sbjct: 309 VVEDMVADGWSAGQVVTQLYQSIVFDETIPDVQKNKIVLIFSEVDKRLVDGADEHLTILD 368
Query: 343 LG 344
L
Sbjct: 369 LA 370
>gi|401837599|gb|EJT41507.1| RFC2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 353
Score = 310 bits (795), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 157/341 (46%), Positives = 218/341 (63%), Gaps = 11/341 (3%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
PS + ++ + + PWVEKYRPK +D+V Q V VLKK L A+LPH LFYG
Sbjct: 6 GPSKKRKTLKLATEQSLAQQPWVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYG 65
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FN 129
PPGTGKTST++A +L+G ++ + RILELNASD+RGI ++R+KVK FA+ T S +
Sbjct: 66 PPGTGKTSTILALTKELYGPELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHD 125
Query: 130 QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
+ PCPP+KI+ILDEADSMT AQ+ALRRTME + TRFCLICNYV+ II PL SRCS
Sbjct: 126 LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCS 185
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----L 245
KFRFK L N + RL+YI EQE+V CD LE +++ S GD+RR IT LQS ++ L
Sbjct: 186 KFRFKALDSNNAIDRLRYISEQENVKCDSGVLERILDISAGDLRRGITLLQSASKKAQYL 245
Query: 246 KGGEGIVNEDVLEVTGVIPNPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFH 302
G+ I + V E+ GV+P+ + K+ ++ F + Y+ + +SA + +Q H
Sbjct: 246 GDGKNITSTQVEELAGVVPHDVLMKITDKVRGGDFDEINTYVNTFMKNGWSAASVVNQLH 305
Query: 303 DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
++ S K I L +++L +G +E+IQ+L+L
Sbjct: 306 QYYITNDSFDTNFKNQISWLLFTTDSKLNNGTNEHIQLLNL 346
>gi|365759876|gb|EHN01638.1| Rfc2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 353
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 155/321 (48%), Positives = 211/321 (65%), Gaps = 11/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVKVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
++ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 ELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L N + RL+YI
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSNNAIDRLRYIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPN 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+
Sbjct: 206 EQENVKCDSGVLERILDISAGDLRRGITLLQSASKKAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 PWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
+ K+ ++ F + Y+ + +SA + +Q H ++ S K I
Sbjct: 266 DVLMKITDKVRGGDFDEINTYVNTFMKSGWSAASVVNQLHQYYITNDSFDTNFKNQISWL 325
Query: 323 LAECNARLQDGASEYIQILDL 343
L +++L +G +E+IQ+L+L
Sbjct: 326 LFTTDSKLNNGTNEHIQLLNL 346
>gi|150865911|ref|XP_001385318.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
gi|149387167|gb|ABN67289.2| Replication factor C, subunit RFC4 [Scheffersomyces stipitis CBS
6054]
Length = 369
Score = 310 bits (794), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 161/343 (46%), Positives = 215/343 (62%), Gaps = 28/343 (8%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + PWVEKYRP+ +DDV Q V VLKK + A+LPH LFYGPPGTGKTST++A
Sbjct: 19 RLEHTPWVEKYRPRNLDDVASQDHAVKVLKKTMESANLPHMLFYGPPGTGKTSTILALSK 78
Query: 89 QLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILD 144
QL+G ++Y+ R+LELNASD+RGI ++R K+K FA+ T S +++ PCPP+KI+ILD
Sbjct: 79 QLYGPNLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPSKEDLEKYPCPPYKIIILD 138
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT+ AQAALRRT+E + TRFCLICNYV+ II PL SRCSKFRF+ L L R
Sbjct: 139 EADSMTNDAQAALRRTIENYSNITRFCLICNYVTRIIDPLASRCSKFRFRLLNNENALNR 198
Query: 205 LQYICEQESVMCDFK--ALETLVETSGGDMRRAITCLQSCARLKG--------------- 247
L+YI EQE + D L+ ++ SGGD+R+AIT LQS +L
Sbjct: 199 LKYIAEQEHISLDSNQLVLQEVLRISGGDLRKAITFLQSATKLHKSLAAPTEEDGDIQML 258
Query: 248 ----GEGIVNEDVLEVTGVIPNPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQ 300
GE I E + E+ GVIP I ++ +K + + + + D+I + +SA Q+ DQ
Sbjct: 259 DEIPGEAITVESIQEIAGVIPENVILEVVSTIKSKNSKSIITQVNDIISQGFSAQQVLDQ 318
Query: 301 FHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
HD + SL K I + L + RL +G E+IQ+LDL
Sbjct: 319 LHDKFILDDSLDSATKNKIAKTLFLIDKRLNNGTDEHIQLLDL 361
>gi|156849229|ref|XP_001647495.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
gi|156118181|gb|EDO19637.1| hypothetical protein Kpol_1018p177 [Vanderwaltozyma polyspora DSM
70294]
Length = 350
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 155/321 (48%), Positives = 221/321 (68%), Gaps = 12/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DDV Q+ V+VLK+ L A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 23 PWVEKYRPKKLDDVAAQEHAVTVLKRTLGSANLPHMLFYGPPGTGKTSTILALTKELFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ T S +++ PCPP+KI+ILDEADSM
Sbjct: 83 NLIKSRVLELNASDERGISIVREKVKNFARLTVSKPSKEDLEKYPCPPYKIIILDEADSM 142
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L E L RL+++
Sbjct: 143 TADAQSALRRTMETYSNITRFCLICNYVTRIIDPLASRCSKFRFKALDETNALDRLKFVA 202
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPN 265
++E+V LE ++E S GD+RRAIT LQS ++ + E VN V E+ GV+P+
Sbjct: 203 QEENVNYKENVLEKILEISSGDLRRAITLLQSASKTSTYTENSEITVNL-VEELAGVVPS 261
Query: 266 PWIEKLLKVDSFQVLE---KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
P + ++++V S + ++ KY++ I +S T + +Q H+ +++ S K +
Sbjct: 262 PALNEIIEVVSSKNIDAVTKYLDKFIRNGWSGTSVVNQLHNHYITSEDYSADFKNKVSWI 321
Query: 323 LAECNARLQDGASEYIQILDL 343
L E +++L +G +E+IQ+L+L
Sbjct: 322 LFETDSKLNNGTNEHIQLLNL 342
>gi|367020560|ref|XP_003659565.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
gi|347006832|gb|AEO54320.1| hypothetical protein MYCTH_2296782 [Myceliophthora thermophila ATCC
42464]
Length = 384
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 165/368 (44%), Positives = 232/368 (63%), Gaps = 33/368 (8%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRN--KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADL 66
K K A ++ S ST +T + PWVEKYRPK + DV Q ++VL++ L ++L
Sbjct: 8 KARKAAAANGTASTSTEKQTNENARAQPWVEKYRPKKLSDVTAQDHTITVLERTLQASNL 67
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTA 125
PH LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 68 PHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARTQL 127
Query: 126 S----GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
+ G+ + PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II
Sbjct: 128 TNPPPGY-KSRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRII 186
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
PL SRCSKFRFK L + RL+ I + E V D A++ L++ S GD+R+AIT LQS
Sbjct: 187 DPLASRCSKFRFKSLDQGNARRRLEDIAKLEGVPIDDGAVDALIKCSDGDLRKAITFLQS 246
Query: 242 CARLKGG---------EG---------IVNEDVLEVTGVIPNPWIEKLLKV-------DS 276
ARL G EG + + V ++ GVIP+ I+KL++ ++
Sbjct: 247 AARLVGASAATAGGRDEGDKMDVDKKTVTAKVVEDIAGVIPDDTIQKLVQAMRPRTAGET 306
Query: 277 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 336
+Q + K +ED++ + +SA Q Q H ++ +++D QK I+ +E + RL DGA E
Sbjct: 307 YQAIAKVVEDMVADGWSAGQTLSQLHQAIVYDETITDAQKNKIVLVFSEIDKRLVDGADE 366
Query: 337 YIQILDLG 344
++ ILDL
Sbjct: 367 HLSILDLA 374
>gi|366988801|ref|XP_003674168.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
gi|342300031|emb|CCC67788.1| hypothetical protein NCAS_0A12300 [Naumovozyma castellii CBS 4309]
Length = 350
Score = 310 bits (793), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 154/321 (47%), Positives = 215/321 (66%), Gaps = 12/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DD+ Q V+VLKK L A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 24 PWVEKYRPKQLDDIAAQGHAVTVLKKTLQSANLPHMLFYGPPGTGKTSTILALAKELFGP 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
++ + RILELNASD+RGI ++R+KVK FA+ T S +++ PCPP+KI+ILDEADSM
Sbjct: 84 ELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKNDLENYPCPPYKIIILDEADSM 143
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFKPL + RL+Y+
Sbjct: 144 TSDAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKPLDATNAIDRLRYVA 203
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR---LKGGEGIVNEDVLEVTGVIPNP 266
+ESV + L+T+++ S GD+RRAIT LQS A+ G E + +++V E+ GV+P+
Sbjct: 204 TEESVSYEDDVLKTILDISAGDLRRAITLLQSAAKRIQYTGAENVTSQNVKELAGVVPDD 263
Query: 267 ----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
+EK+ + ++E Y+ + +S + DQ HD +S K +
Sbjct: 264 ILKMIVEKVSNKNVNDIIE-YVNEFTKSGWSGAAVIDQLHDYYISNDEYDTAFKNNVSMI 322
Query: 323 LAECNARLQDGASEYIQILDL 343
L + +A+L +G +E++Q+L+L
Sbjct: 323 LFDTDAKLSNGTNEHLQLLNL 343
>gi|50513624|pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 310 bits (793), Expect = 9e-82, Method: Compositional matrix adjust.
Identities = 158/321 (49%), Positives = 216/321 (67%), Gaps = 11/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL S+CSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPN 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
IE + KV S F ++KY+ + +SA + +Q H+ ++ + K I
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWL 325
Query: 323 LAECNARLQDGASEYIQILDL 343
L ++RL +G +E+IQ+L+L
Sbjct: 326 LFTTDSRLNNGTNEHIQLLNL 346
>gi|340517381|gb|EGR47625.1| predicted protein [Trichoderma reesei QM6a]
Length = 351
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 166/337 (49%), Positives = 221/337 (65%), Gaps = 29/337 (8%)
Query: 24 TSGKTRNKPV-----PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTG 78
TS + +KP PWVEKYRPK++DDV Q V+VL++ L ++LPH LFYGPPGTG
Sbjct: 18 TSSQKHDKPADVRVQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTG 77
Query: 79 KTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKP 134
KTST++A +L+G +M + R+LELNASD+RGI ++R KVK FA+ + +D P
Sbjct: 78 KTSTILALAKELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPHYKDKYP 137
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
CPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK
Sbjct: 138 CPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFK 197
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
L + RL+ I E E V + A++TL++ S GD+R+AIT LQS ARL + E
Sbjct: 198 SLDQGNAKKRLESIAEAEGVALEDGAVDTLIKCSEGDLRKAITYLQSAARL------IVE 251
Query: 255 DVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS 307
D + GVIP+ I L+K ++Q + K +EDL+ + +SA QL + D+V
Sbjct: 252 D---IAGVIPDATIGDLVKAMRPRTSGQTYQSISKVVEDLVADGWSAGQL---YQDLVFD 305
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
++ D QK I+ +E + RL DGA E++ ILDL
Sbjct: 306 -ETIPDIQKNKIVLVFSEIDKRLVDGADEHLSILDLA 341
>gi|365981921|ref|XP_003667794.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
gi|343766560|emb|CCD22551.1| hypothetical protein NDAI_0A03940 [Naumovozyma dairenensis CBS 421]
Length = 354
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 163/354 (46%), Positives = 228/354 (64%), Gaps = 19/354 (5%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
E F +T K D SS +++ S PWVEKYRPK +DD+ Q VSVLKK
Sbjct: 2 FEGFNKTKKRKLDNTESSSSALHQSK-------PWVEKYRPKQLDDITAQGHAVSVLKKT 54
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L A+LPH LFYGPPGTGKTST++A +L+G ++ + RILELNASD+RGI ++R+KVK
Sbjct: 55 LQSANLPHMLFYGPPGTGKTSTILALAKELYGPELMKSRILELNASDERGISIVREKVKN 114
Query: 120 FAQQTASGFNQD---GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
FA+ T S +++ PCPP+KI+ILDEADSMT AQ+ALRRTME + TRFCLICNY
Sbjct: 115 FARLTVSKPSKNDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNY 174
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
V+ II PL SRCSKFRFKPL + RL+Y+ +ESV D ++ +++ S GD+RRAI
Sbjct: 175 VTRIIDPLASRCSKFRFKPLDATNSIGRLEYVAREESVQYDDDVMKCILDISEGDLRRAI 234
Query: 237 TCLQSCAR---LKGGEGIVNEDVLEVTGVIPNP----WIEKLLKVDSFQVLEKYIEDLIL 289
T LQS ++ G + + + V E+ GVIP+ I+K+ K D + +E Y+ + I
Sbjct: 235 TLLQSASKRILYTGEKQVTSASVKELAGVIPDDVFQVVIDKVSKNDVNETIE-YVNEFIK 293
Query: 290 EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+SA + +Q HD ++ + K + L E +++L +G +E+IQ+L+L
Sbjct: 294 SGWSAASVINQLHDYYITNDEFNSDFKNKVSLILFEMDSKLANGTNEHIQLLNL 347
>gi|156057403|ref|XP_001594625.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980]
gi|154702218|gb|EDO01957.1| hypothetical protein SS1G_04432 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 412
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 163/373 (43%), Positives = 232/373 (62%), Gaps = 31/373 (8%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M +F +A S+ ++ K N+ PWVEKYRPK + DV Q ++VL++
Sbjct: 1 MASFFDIKARKAEAASNGTANIKEKPKGNNRMQPWVEKYRPKGLGDVTAQDHTITVLQRT 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L ++LPH LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK
Sbjct: 61 LQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPELIKSRVLELNASDERGISIVREKVKD 120
Query: 120 FAQQTASGFN---QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
FA+ S + + PCPP+KI+ILDEADSMT AQ+ALRRTME ++ TRFCLICNY
Sbjct: 121 FARMQLSNPSPAYRQKYPCPPYKIIILDEADSMTQDAQSALRRTMETYSRITRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
V+ II PL SRCSKFRFK L + + R++ I ++E V + A+E L+ S GD+R+AI
Sbjct: 181 VTRIIDPLASRCSKFRFKSLDKGNAVVRVKEIADKEGVKLEEGAVEALIRCSEGDLRKAI 240
Query: 237 TCLQSCARLKG------GEGIVNED-------------VLEVTGVIPNPWIEKLLKVDS- 276
T LQS ARL G GEG NED V ++ GVIP+ IEKL+K
Sbjct: 241 TYLQSAARLVGAISLKDGEGD-NEDKMDVDAKMVTVSSVEDIAGVIPDNTIEKLVKAMQP 299
Query: 277 ------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+ + K + D++ + +S TQ+ Q + ++++ ++D K I+ +E + RL
Sbjct: 300 KSRGVVYDAVSKVVVDMVADGWSGTQVVSQLYQTIVNSEFIADTHKNKIVALFSEADKRL 359
Query: 331 QDGASEYIQILDL 343
DGA E++ ILDL
Sbjct: 360 VDGADEHLTILDL 372
>gi|325181066|emb|CCA15478.1| replication factor C subunit 4 putative [Albugo laibachii Nc14]
Length = 333
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 154/322 (47%), Positives = 218/322 (67%), Gaps = 10/322 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW+EKYRPK I+D+ Q+ VV+ L++ ++ LPH LFYGPPGTGKTST++A +L+G
Sbjct: 10 LPWIEKYRPKVINDISHQEHVVATLRQSIASGQLPHLLFYGPPGTGKTSTIVAVARELYG 69
Query: 93 DMYRE--RILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+ +R+ R LELNASDDRGI+V+R+KVK FAQ G + P FKI++LDEADSMT
Sbjct: 70 NDFRKNGRYLELNASDDRGIKVVREKVKLFAQ----GAINSSESMPAFKIIVLDEADSMT 125
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
+ AQ+ALRR ME +K TRFCLICNYVS II P+ SRC KFRF PL + +M RL YI
Sbjct: 126 NDAQSALRRMMEDYSKVTRFCLICNYVSRIIDPIASRCVKFRFSPLTKESMAARLSYIGS 185
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
QE++ D ++TL++ + GD+R+AI +QS AR GG+ + N++++ V G+ P +E
Sbjct: 186 QENLRLDDDIIDTLLDCANGDLRKAINLMQS-ARQTGGKELTNDEIVAVAGLAPKELLEN 244
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
K +SF + IE ++L Y + Q + +M S LSD QKA ++AE +
Sbjct: 245 FWKAIAGNSFDSMRTEIESILLSGYPTLTILHQLSEDIMKRSELSDIQKARSCLRIAEAD 304
Query: 328 ARLQDGASEYIQILDLGSIVIK 349
++L DGASEY Q+ D+GS +++
Sbjct: 305 SKLIDGASEYFQLFDVGSYIMR 326
>gi|358395863|gb|EHK45250.1| hypothetical protein TRIATDRAFT_151487 [Trichoderma atroviride IMI
206040]
Length = 381
Score = 308 bits (789), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/353 (46%), Positives = 224/353 (63%), Gaps = 33/353 (9%)
Query: 25 SGKTRNKPV-----PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
S + +KP PWVEKYRPK++DDV Q V+VL++ L ++LPH LFYGPPGTGK
Sbjct: 19 SSQKHDKPADVRAQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGK 78
Query: 80 TSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPC 135
TST++A +L+G +M + R+LELNASD+RGI ++R KVK FA+ + +D PC
Sbjct: 79 TSTILALAKELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYPC 138
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
PPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK
Sbjct: 139 PPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKS 198
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG-------G 248
L + RL+ I E E V + A++ L++ S GD+R+AIT LQS ARL G G
Sbjct: 199 LDQGNAKRRLESIAEAEGVTLEDGAIDALIKCSEGDLRKAITFLQSAARLVGAKPLEKDG 258
Query: 249 EG----------IVNEDVLEVTGVIPNPWIEKLLK-------VDSFQVLEKYIEDLILEA 291
EG + + V ++ GVIP I L+K ++++ + K +EDL+ +
Sbjct: 259 EGDEAMDVDKRPVTVKIVEDIAGVIPGSTINDLVKAMRPSTSAEAYRSISKVVEDLVADG 318
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
+SA Q+ +Q + ++ + D QK I+ +E + RL DGA E++ ILDL
Sbjct: 319 WSAGQVVNQLYQEIVFDEIVPDVQKNKIVLVFSEVDKRLVDGADEHLSILDLA 371
>gi|58270226|ref|XP_572269.1| activator 1 41 kda subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134117646|ref|XP_772457.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255071|gb|EAL17810.1| hypothetical protein CNBL0720 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228527|gb|AAW44962.1| activator 1 41 kda subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 363
Score = 308 bits (789), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 160/333 (48%), Positives = 216/333 (64%), Gaps = 24/333 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 19 PWVEKYRPKTIDDVSSQDNTVAVLRKALASTNLPHMLFYGPPGTGKTSTILALARQLFGP 78
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGK--PCPPFKIVILDEAD 147
D++R R+LELNASD+RGI V+R+K+K+FA++T A + DGK PCPPFK++ILDEAD
Sbjct: 79 DLFRARVLELNASDERGISVVREKIKSFARETPRHAPAVSSDGKEYPCPPFKLIILDEAD 138
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ+ALRR ME +K TRFCL+CNYV+ II+PL SRCSKFRFKPL + + R++
Sbjct: 139 SMTQDAQSALRRIMETYSKITRFCLVCNYVTRIIEPLASRCSKFRFKPLEQGSTRARMEM 198
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVI 263
I E E V D + ++E +GGD+R+AIT LQ+ RL + + E++GV+
Sbjct: 199 IAENEGVQTDPGVISLILELAGGDLRKAITYLQTAQRLHSSIEPPMPVSALSIHEISGVV 258
Query: 264 PNPWIEKLLK---VD-----------SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 309
P I LL VD F ++ + + E +S Q+ +Q HD ++
Sbjct: 259 PEDLITDLLAAMGVDRQTGIDHSLARGFDGVKIAVTRVEREGWSVGQVLEQIHDTLIPIP 318
Query: 310 SLSDKQKALILEKLAECNARLQDGASEYIQILD 342
S+ QK+L +AEC+ L +G E +Q+LD
Sbjct: 319 SIPAIQKSLAGIAIAECDKGLCEGGDEELQLLD 351
>gi|401625031|gb|EJS43057.1| rfc2p [Saccharomyces arboricola H-6]
Length = 353
Score = 308 bits (788), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 152/321 (47%), Positives = 212/321 (66%), Gaps = 11/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVE+YRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVERYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
++ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 ELMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L N + RL+YI
Sbjct: 146 TADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKALDANNAIDRLRYIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPN 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P
Sbjct: 206 EQENVKCDAGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPK 265
Query: 266 PWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
+ ++ +K F + K++ + +S + +Q H+ ++ + K I
Sbjct: 266 EVLMEIVDKVKSGDFDEINKHVNTFMKSGWSGASVVNQLHEYYITNDAFDTNFKNQISWL 325
Query: 323 LAECNARLQDGASEYIQILDL 343
L +++L +G +E+IQ+L+L
Sbjct: 326 LFTTDSKLNNGTNEHIQLLNL 346
>gi|388852328|emb|CCF53943.1| probable RFC2-DNA replication factor C, 41 KD subunit [Ustilago
hordei]
Length = 383
Score = 308 bits (788), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 163/332 (49%), Positives = 214/332 (64%), Gaps = 30/332 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ V+VLKK L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 30 PWVEKYRPKTIDDVAAQEHTVAVLKKTLMSNNLPHMLFYGPPGTGKTSTILALARQLFGP 89
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+K+K FA+ + ++G PCPPFKI+ILDEADSMT
Sbjct: 90 ELVKTRVLELNASDERGITVVREKIKNFAKLAVTN-PKEGFPCPPFKIIILDEADSMTQD 148
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR ME+ ++ TRFCL+CNYV+ II+PL SRCSKFRF+ L + TRL+ I E
Sbjct: 149 AQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTCSTKTRLEMIAGAE 208
Query: 213 SV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG-----IVNEDVLEVTGVIPNP 266
SV D L+TL+ TS GD+RRAIT LQS +RL G + +E ++E+ GV+P
Sbjct: 209 SVSFQDSSVLDTLITTSDGDLRRAITYLQSASRLHSIAGDDKTSVTSESIVEIAGVVPTR 268
Query: 267 WIEKLL----------------------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
I L K D+F+ + + ++ + E YS TQL Q HD
Sbjct: 269 VITSLADAVAIEPYTSDGDEDMDPVSKKKRDAFERIREQVKIITREGYSITQLLVQLHDY 328
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASE 336
++S +L K KA + +AE + L DGA E
Sbjct: 329 IISHPTLLAKIKAKVALLMAEMDKCLTDGADE 360
>gi|116207062|ref|XP_001229340.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
gi|88183421|gb|EAQ90889.1| hypothetical protein CHGG_02824 [Chaetomium globosum CBS 148.51]
Length = 382
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 164/357 (45%), Positives = 226/357 (63%), Gaps = 31/357 (8%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+SS T S TR +P WVEKYRPKT+ DV Q ++VL++ L ++LPH LFYGPP
Sbjct: 19 TSSSTEKQKSETTRVQP--WVEKYRPKTLSDVTAQDHTITVLERTLQASNLPHMLFYGPP 76
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ----QTASGFNQ 130
GTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+ +G+ +
Sbjct: 77 GTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARTQLTNPPAGY-K 135
Query: 131 DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSK
Sbjct: 136 TRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSK 195
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
FRFK L + RL+ I E V + A++ L++ S GD+R+AIT LQS ARL G
Sbjct: 196 FRFKSLDQGNARRRLEEIARLEGVPIEDAAVDALIKCSDGDLRKAITFLQSAARLVGASA 255
Query: 251 IV--NED--------------VLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDL 287
V ED V ++ GVIP+ I+ L++ +++Q + K +E++
Sbjct: 256 SVAGGEDGEAMDVDKMVTAKVVEDIAGVIPDSTIQALVQAMRPRAAGETYQAIAKVVEEM 315
Query: 288 ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
+ + +SA Q Q H V+ ++ D QK I+ +E + RL DGA E++ ILDL
Sbjct: 316 VADGWSAGQTMTQLHSAVVYDETIPDIQKNKIVMVFSETDKRLVDGADEHLSILDLA 372
>gi|367042572|ref|XP_003651666.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
gi|346998928|gb|AEO65330.1| hypothetical protein THITE_2112208 [Thielavia terrestris NRRL 8126]
Length = 383
Score = 307 bits (787), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 163/339 (48%), Positives = 217/339 (64%), Gaps = 28/339 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q VSVL++ L ++LPH LFYGPPGTGKTST++A +L+G
Sbjct: 35 PWVEKYRPKTLSDVTAQDHTVSVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGP 94
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ + K PCPPFKI+ILDEADSM
Sbjct: 95 ELMKSRVLELNASDERGISIVREKVKDFARTQLTNPPPGYKARYPCPPFKIIILDEADSM 154
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL+ I
Sbjct: 155 TQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNARRRLEEIA 214
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG----GEGIVNED---------- 255
E V + A++ L++ S GD+R+AIT LQS ARL G G +ED
Sbjct: 215 RLEGVGMEDGAVDALIKCSDGDLRKAITFLQSAARLVGASSAGSDGKDEDRMGVDKKLVT 274
Query: 256 ---VLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
V ++ GVIP+ I+KL+ +++Q + K +EDL+ + +SA Q Q H V
Sbjct: 275 AKVVEDIAGVIPDDTIQKLVAAMRPRAAGETYQAIAKVVEDLVADGWSAGQTMAQLHQAV 334
Query: 306 MSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
+ ++ D QK I+ +E + RL DGA E++ ILDL
Sbjct: 335 VYDETIPDIQKNRIVMVFSEIDKRLVDGADEHLSILDLA 373
>gi|50287127|ref|XP_445993.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525300|emb|CAG58917.1| unnamed protein product [Candida glabrata]
Length = 352
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 154/320 (48%), Positives = 215/320 (67%), Gaps = 10/320 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DDV Q VV+VLKK LS A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 26 PWVEKYRPKKLDDVAAQDHVVNVLKKTLSSANLPHMLFYGPPGTGKTSTILALTKELFGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ T S + + CPP+KI+ILDEADSM
Sbjct: 86 ELMKTRVLELNASDERGISIVREKVKNFARLTVSKPSKHDLENYLCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + L RL+Y+
Sbjct: 146 TADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKSLDSSNALQRLKYVA 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG---IVNEDVLEVTGVIPNP 266
E+E V +LET+++ S GD+RRAIT LQS ++ G G + E V E+ V+P
Sbjct: 206 EEEGVKVKAGSLETILDISAGDLRRAITLLQSASKNIGYSGEDEVSKELVEELAAVVPES 265
Query: 267 WIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 323
I++++++ F + +YI++ +SA + Q HD + +S K + L
Sbjct: 266 SIKQIVELVATRDFNKISEYIQEFTRNGWSAASVVSQLHDYYIKSSEYDTAFKNKVSIIL 325
Query: 324 AECNARLQDGASEYIQILDL 343
+ +++L +G +E+IQ+L++
Sbjct: 326 FDTDSKLTNGTNEHIQLLNM 345
>gi|395528003|ref|XP_003766124.1| PREDICTED: replication factor C subunit 4 [Sarcophilus harrisii]
Length = 302
Score = 307 bits (786), Expect = 5e-81, Method: Compositional matrix adjust.
Identities = 156/291 (53%), Positives = 204/291 (70%), Gaps = 6/291 (2%)
Query: 65 DLPHFLFYGPPGTGK---TSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA 121
D P L +GPP + + H +++R+R+LELNASD+RGIQVIR+KVKTFA
Sbjct: 5 DTPISLAFGPPISDHWLPLPSQATKMHSYGPELFRQRVLELNASDERGIQVIREKVKTFA 64
Query: 122 QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
Q T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNYVS II
Sbjct: 65 QLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRII 124
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+R+AIT LQS
Sbjct: 125 EPLTSRCSKFRFKPLSDKIQYQRLLDISEKENVKISNEGISYLVKVSEGDLRKAITFLQS 184
Query: 242 CARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLF 298
RL GG+ + + + E+ GV+P I + SF+ LE ++DLI E ++ATQL
Sbjct: 185 ATRLTGGQEVTEKVITEIAGVVPTETINGIFSACQSGSFEKLEAIVKDLIDEGHAATQLI 244
Query: 299 DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+Q HD+V+ L+DKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 245 NQLHDVVVEKEDLTDKQKSVIAEKLAEMDKCLADGADEHLQLISLCATVMQ 295
>gi|291244804|ref|XP_002742285.1| PREDICTED: replication factor C 4-like [Saccoglossus kowalevskii]
Length = 288
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 221/352 (62%), Gaps = 73/352 (20%)
Query: 1 MEAFLRTG--KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLK 58
M AFL+ G KL + K+ S SG ++ + PWVEKYRPK++D+V Q EVV+VLK
Sbjct: 1 MHAFLKGGGSKLKEKVDKEGKSGPSGSGGSKRQITPWVEKYRPKSVDEVAFQDEVVAVLK 60
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKV 117
K + G+DLP+ LFYGPPGTGKTST++A +LFG+ M+R R+LELNASD+RGI V+R+KV
Sbjct: 61 KSIEGSDLPNLLFYGPPGTGKTSTILAVARELFGNEMFRTRVLELNASDERGINVVREKV 120
Query: 118 KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
K FAQ +AS DGKPCPP+KI+ILDEADSMT AAQAALRRTMEKETK+TRFCLICNYV
Sbjct: 121 KRFAQLSASATRSDGKPCPPYKIIILDEADSMTGAAQAALRRTMEKETKTTRFCLICNYV 180
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
S II PLTSRC+KFRFKPLA + +LTRL+ ICEQE+V C + E V+ S G
Sbjct: 181 SRIIGPLTSRCAKFRFKPLATSILLTRLKGICEQENVNC---SEEVGVKVSKG------- 230
Query: 238 CLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQL 297
E YI D+I++
Sbjct: 231 -------------------------------------------EHYIHDIIVQ------- 240
Query: 298 FDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+ +S KQK++I E+L + RL DGA EY+Q++DL +++++
Sbjct: 241 ----------KADISGKQKSIICERLGMVDKRLSDGADEYLQMMDLCTVIMQ 282
>gi|340992727|gb|EGS23282.1| replication factor C subunit 2-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 384
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 164/368 (44%), Positives = 228/368 (61%), Gaps = 33/368 (8%)
Query: 9 KLGKDAPSSSKTSVSTSGKT--RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADL 66
K + A S+ S ST +T + PWVEKYRPKT++DV Q VSVL++ L ++L
Sbjct: 8 KARRAAQSNGTASTSTEKQTAEHTRAQPWVEKYRPKTLNDVTAQDHTVSVLQRTLQASNL 67
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTA 125
PH LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI +IR+KVK FA+
Sbjct: 68 PHMLFYGPPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIIREKVKDFARTQL 127
Query: 126 S----GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
+ G+ + PCPPFK++ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II
Sbjct: 128 TNPPPGY-KTKYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRII 186
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
PL SRCSKFRFK L + RL+ I + E+V A++ L+ S GD+R+AIT LQS
Sbjct: 187 DPLASRCSKFRFKSLDQGNARKRLEEIAQLENVGLADGAVDALIRCSEGDLRKAITFLQS 246
Query: 242 CARLKGGEGIVNED------------------VLEVTGVIPNPWIEKLLKV-------DS 276
ARL G D V ++ GVIP+ I+KL+K ++
Sbjct: 247 AARLVGASQAAQGDSEDGDKMDVDKTLVTAKIVEDIAGVIPDDTIQKLVKAMRPRATGET 306
Query: 277 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 336
+ + K +E+++ + +SA Q Q H ++ ++ D QK I+ +E + RL DGA E
Sbjct: 307 YSAIAKVVEEMVADGWSAGQTLAQLHKAIVYDETIPDTQKNKIVMVFSEIDKRLVDGADE 366
Query: 337 YIQILDLG 344
++ +LDL
Sbjct: 367 HLSMLDLA 374
>gi|71000134|ref|XP_754784.1| DNA replication factor C subunit Rfc2 [Aspergillus fumigatus Af293]
gi|66852421|gb|EAL92746.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus Af293]
gi|159127792|gb|EDP52907.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
fumigatus A1163]
Length = 394
Score = 307 bits (786), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 161/365 (44%), Positives = 224/365 (61%), Gaps = 38/365 (10%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+SSK + + + + PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPP
Sbjct: 22 TSSKQKPTDGKEEQTRLQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPP 81
Query: 76 GTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQT--------AS 126
GTGKTST++A LFG +YR RILELNASD+RGI ++R+KVK FA+ +S
Sbjct: 82 GTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARTQLSQPTGLDSS 141
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
F Q PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL S
Sbjct: 142 YFEQ--YPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLAS 199
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RCSKFRFKPL + RL +I E++ D ++ L+ S GD+RRAIT +QS ARL
Sbjct: 200 RCSKFRFKPLDNSAAAERLAHIARLENLKLDEGVIDKLISCSEGDLRRAITYMQSAARLV 259
Query: 247 GG--------------------EGIVNEDVLEVTGVIPNPWIEKLLKV-------DSFQV 279
G E + + + E+ GV+P I++L++ S++
Sbjct: 260 GAGRPTSQKDGDEDSEMTDASSEPVTMQMIEEIAGVVPESVIDRLIQAMQPKKLGSSYEA 319
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
+ + D++ + +SA QL Q + ++ ++ D QK I+ +E + RL DGA E++
Sbjct: 320 ISTVVTDIVADGWSAGQLVLQLYRRIVYNDAIPDIQKNKIVTAFSEMDKRLVDGADEHLS 379
Query: 340 ILDLG 344
ILDL
Sbjct: 380 ILDLA 384
>gi|50552766|ref|XP_503793.1| YALI0E10747p [Yarrowia lipolytica]
gi|49649662|emb|CAG79384.1| YALI0E10747p [Yarrowia lipolytica CLIB122]
Length = 378
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 158/347 (45%), Positives = 221/347 (63%), Gaps = 31/347 (8%)
Query: 28 TRNK-PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
++NK P PWVEKYRPK++DDV Q V+VLK+ L A+LPH LFYGPPGTGKTST++A
Sbjct: 20 SKNKAPPPWVEKYRPKSLDDVSSQDHAVTVLKRTLGSANLPHMLFYGPPGTGKTSTVLAL 79
Query: 87 CHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ---DGKPCPPFKIVI 142
+L+G ++ ++R+LELNASD+RGI ++RD +K FA Q + PCPPFKI+I
Sbjct: 80 AKELYGPELMKDRVLELNASDERGIAIVRDSIKNFAAQKVVAPKDHIAEKYPCPPFKIII 139
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRF+ L N L
Sbjct: 140 LDEADSMTTDAQSALRRTMETYSAQTRFCLICNYVTRIIDPLASRCSKFRFRLLDGNDAL 199
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG----------GEGIV 252
RL+++ + E + + LE ++E + GD+RRAIT LQSC+RL G G+ +
Sbjct: 200 ARLRHVSDAEQLSVEDGVLEKILEVANGDLRRAITILQSCSRLSGESSAAQNDEDGDATM 259
Query: 253 NE-------DVLEVTGVIPNPWIEKLLKV---------DSFQVLEKYIEDLILEAYSATQ 296
E DV E GVIP ++ ++K D+ + +++L +S+ Q
Sbjct: 260 AETRPITIADVNETAGVIPTETLKAIIKACKDSKGPIGDTVPDILVAVKELTYSGWSSAQ 319
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ Q HD++++ + K+K+ I E L+ + RL DGA E + +L+L
Sbjct: 320 ITSQMHDLIITDVLIEGKEKSKIAELLSVTDKRLADGADESLAMLNL 366
>gi|239611536|gb|EEQ88523.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ER-3]
Length = 389
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 158/345 (45%), Positives = 221/345 (64%), Gaps = 34/345 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+DDV Q+ V+VL++ L ++LPH LFYGPPGTGKTST++A LFG
Sbjct: 34 PWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS------GFNQDGKPCPPFKIVILDEA 146
+YR RILELNASD+RGI ++R+K+K FA+ S ++ PCPPFKI+ILDEA
Sbjct: 94 QLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDEA 153
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRCSKFRFK L + +RL+
Sbjct: 154 DSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLE 213
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK-------------------G 247
I E + +ETL+ S GD+RRAIT LQS ARL G
Sbjct: 214 KIARVEKLKLADGCVETLIRCSEGDLRRAITYLQSAARLVGSVGGKDGGGDEEMTDVGAG 273
Query: 248 GEGIVNEDVL-EVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFD 299
+G++ ++ E+ GV+P+ I++L+K S++ + + D++ + +SA+Q+
Sbjct: 274 EDGVITARIIEEIAGVVPDDIIDRLIKALQPKKGRSSYEDVANVVTDIVADGWSASQILT 333
Query: 300 QFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
Q + I++ S+ D QK ++ +E + RL DGA E++ ILDL
Sbjct: 334 QLYQIIVFDDSIPDIQKNSLVLVFSEFDKRLIDGADEHLAILDLA 378
>gi|408398889|gb|EKJ78015.1| hypothetical protein FPSE_01803 [Fusarium pseudograminearum CS3096]
Length = 382
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 164/345 (47%), Positives = 221/345 (64%), Gaps = 32/345 (9%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
TRN+P WVEKYRPKT+ DV Q V VL++ L ++LPH LFYGPPGTGKTST++A
Sbjct: 30 TRNQP--WVEKYRPKTLSDVTAQDHTVDVLQRTLQSSNLPHMLFYGPPGTGKTSTVLALA 87
Query: 88 HQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS----GFNQDGKPCPPFKIVI 142
+L+G DM + R+LELNASD+RGI ++R+KVK FA+ + G+ +D PCPPFKI+I
Sbjct: 88 KELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTNPPPGY-KDKYPCPPFKIII 146
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L ++
Sbjct: 147 LDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQSNAK 206
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG-------GEG----- 250
RL+ I E+E V + A++ L++ S GD+R+AIT LQS ARL G GEG
Sbjct: 207 KRLEEIAEKEGVPLEDGAVDALIKCSEGDLRKAITFLQSAARLVGASASDKDGEGDEAMD 266
Query: 251 -----IVNEDVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLF 298
+ + V ++ GVIP+ I L+ S+Q + +E L+ + +SA Q+
Sbjct: 267 VDKKAVTVKIVEDIAGVIPDSTIGDLVSAIRPKSSGSSYQAISDVVEKLVADGWSAGQVV 326
Query: 299 DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
Q + + + D QK I+ +E + RL DGA E++ +LDL
Sbjct: 327 GQLYQALTYDEIIPDAQKNKIVMVFSEVDKRLVDGADEHLSVLDL 371
>gi|254585047|ref|XP_002498091.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
gi|238940985|emb|CAR29158.1| ZYRO0G02002p [Zygosaccharomyces rouxii]
Length = 352
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 158/320 (49%), Positives = 221/320 (69%), Gaps = 10/320 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DDV Q +SVLKK L+ A+LPH LFYGPPGTGKTST+ A +L+G
Sbjct: 24 PWVEKYRPKKLDDVSAQDHTISVLKKTLTSANLPHMLFYGPPGTGKTSTIFALTRELYGP 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ T S +++ PCPP+KI+ILDEADSM
Sbjct: 84 ELSKTRVLELNASDERGIAIVREKVKNFARLTVSKPSKEALEKYPCPPYKIIILDEADSM 143
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L E+ + RL+ I
Sbjct: 144 TADAQSALRRTMENHSNVTRFCLICNYVTRIIDPLASRCSKFRFKSLDESNAIGRLKEIS 203
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCA-RLKGGE--GIVNEDVLEVTGVIPNP 266
+ E+V + AL+ ++E S GDMRRAIT LQS A RL GE I +++V E+ G++P
Sbjct: 204 QLENVPHEEGALQRILEISNGDMRRAITLLQSAAKRLGFGELDKITSQEVEELAGLVPTH 263
Query: 267 WIEKLL-KVDSFQVLE--KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 323
++++L KV V E +Y+ + + +SA + +Q HD ++++ K I L
Sbjct: 264 ILQEMLNKVSQGNVNEIIEYVNEFVKNGWSAVSVVNQLHDYYITSNDYGTDFKNKISLLL 323
Query: 324 AECNARLQDGASEYIQILDL 343
+ +A+L +G +E++Q+L+L
Sbjct: 324 FDADAKLANGTNEHLQLLNL 343
>gi|344299747|gb|EGW30100.1| replication factor C, subunit RFC4 [Spathaspora passalidarum NRRL
Y-27907]
Length = 346
Score = 306 bits (785), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 155/324 (47%), Positives = 216/324 (66%), Gaps = 13/324 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DDV Q+ V++LK+ L+ A+LPH LFYGPPGTGKTST++A QLFG
Sbjct: 16 PWVEKYRPKNLDDVASQEHAVAILKRTLATANLPHMLFYGPPGTGKTSTILALSKQLFGP 75
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R K+K FA+ T S + PCPP+KI+ILDEADSM
Sbjct: 76 NLSKSRVLELNASDERGINIVRSKIKNFARLTISNPTPEDLANYPCPPYKIIILDEADSM 135
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME + TRFCLICNY++ II PL SRCSKFRFK L + L RL+YI
Sbjct: 136 TNDAQSALRRTMETYSGMTRFCLICNYITRIIDPLASRCSKFRFKLLNNDDGLNRLKYIA 195
Query: 210 EQESVMCDFK--ALETLVETSGGDMRRAITCLQSCARLKGG----EGIVNEDVLEVTGVI 263
EQE + D + L+ +++ SGGD+R+AIT LQS ++L + I + + E GV+
Sbjct: 196 EQEDLTLDQEEPVLQQVLDISGGDLRKAITYLQSASKLSNSYDEHQEISGKLIRETAGVL 255
Query: 264 PNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
I++L+ V + + Y+ ++IL+ +S QL Q HD ++ S+ K I
Sbjct: 256 YEEIIDELVNVIKGKNHTQISNYVNEIILQGWSIQQLISQLHDKLILDDSIDSLTKNQIA 315
Query: 321 EKLAECNARLQDGASEYIQILDLG 344
L E + RL +G+ E+IQ+L+L
Sbjct: 316 INLFETDKRLNNGSDEHIQLLNLS 339
>gi|261205028|ref|XP_002627251.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|239592310|gb|EEQ74891.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
SLH14081]
gi|327348452|gb|EGE77309.1| DNA replication factor C subunit Rfc2 [Ajellomyces dermatitidis
ATCC 18188]
Length = 389
Score = 306 bits (784), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 158/345 (45%), Positives = 221/345 (64%), Gaps = 34/345 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+DDV Q+ V+VL++ L ++LPH LFYGPPGTGKTST++A LFG
Sbjct: 34 PWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS------GFNQDGKPCPPFKIVILDEA 146
+YR RILELNASD+RGI ++R+K+K FA+ S ++ PCPPFKI+ILDEA
Sbjct: 94 QLYRSRILELNASDERGISIVREKIKDFARMQLSHPPASDSAYRETYPCPPFKIIILDEA 153
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRCSKFRFK L + +RL+
Sbjct: 154 DSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGSRLE 213
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK-------------------G 247
I E + +ETL+ S GD+RRAIT LQS ARL G
Sbjct: 214 KIARVEKLKLADGCVETLIRCSEGDLRRAITYLQSAARLVGSVGGKDGGGDEEMTDVGAG 273
Query: 248 GEGIVNEDVL-EVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFD 299
+G++ ++ E+ GV+P+ I++L+K S++ + + D++ + +SA+Q+
Sbjct: 274 EDGVITARIIEEIAGVVPDDIIDRLIKALQPKKGRSSYEDVASVVTDIVADGWSASQILT 333
Query: 300 QFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
Q + I++ S+ D QK ++ +E + RL DGA E++ ILDL
Sbjct: 334 QLYQIIVFDDSIPDIQKNSLVLVFSEFDKRLIDGADEHLAILDLA 378
>gi|121705176|ref|XP_001270851.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
gi|119398997|gb|EAW09425.1| DNA replication factor C subunit Rfc2, putative [Aspergillus
clavatus NRRL 1]
Length = 391
Score = 306 bits (784), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 160/365 (43%), Positives = 224/365 (61%), Gaps = 38/365 (10%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S SK + + + + + PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPP
Sbjct: 19 SGSKQKPTDAKEEQTRLQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPP 78
Query: 76 GTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQT--------AS 126
GTGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ +S
Sbjct: 79 GTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVREKIKGFARTQLSQPTGLDSS 138
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
F Q PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL S
Sbjct: 139 YFEQ--YPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLAS 196
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL- 245
RCSKFRFKPL + RL+ I EQE++ + +E L+ GD+RRAIT +QS ARL
Sbjct: 197 RCSKFRFKPLDNSAAGERLKSIAEQENLNLEDGVIEKLISCGEGDLRRAITYMQSAARLV 256
Query: 246 -------------------KGGEGIVNEDVLEVTGVIPNPWIEKLLKV-------DSFQV 279
G + I + E+ GV+P +++L++ S++
Sbjct: 257 GVGRAAAPKDGDEDSEMADAGSQAITVRTIEEIAGVVPESVLDRLVQAMQPKKLGSSYEA 316
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
+ + D++ + +SA QL Q + ++ ++ D QK I+ +E + RL DGA E++
Sbjct: 317 VSAVVTDIVADGWSAGQLVLQLYRRIVYNDAIPDIQKNRIVTAFSEMDKRLVDGADEHLS 376
Query: 340 ILDLG 344
ILDL
Sbjct: 377 ILDLA 381
>gi|358388819|gb|EHK26412.1| hypothetical protein TRIVIDRAFT_63722 [Trichoderma virens Gv29-8]
Length = 378
Score = 306 bits (784), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 163/353 (46%), Positives = 228/353 (64%), Gaps = 36/353 (10%)
Query: 24 TSGKTRNKPV-----PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTG 78
TS + ++KP PWVEKYRPK++DDV Q V+VL++ L ++LPH LFYGPPGTG
Sbjct: 18 TSSQKQDKPADVRAQPWVEKYRPKSLDDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTG 77
Query: 79 KTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKP 134
KTST++A +L+G +M + R+LELNASD+RGI ++R KVK FA+ + +D P
Sbjct: 78 KTSTILALAKELYGPEMIKSRVLELNASDERGISIVRQKVKDFARMQLTNPPPSYKDKYP 137
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
CPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK
Sbjct: 138 CPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFK 197
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG------- 247
L ++ RL+ I E E V + A++ L++ S GD+R+AIT LQS ARL G
Sbjct: 198 SLDQSNAKKRLESIAEAEGVTLEDGAVDALIKCSEGDLRKAITFLQSAARLVGAKLSEKD 257
Query: 248 --GEGIVNED--------VLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILE 290
G+ ++ D V ++ GVIP ++ L+K +++Q + K +EDL+ +
Sbjct: 258 SDGDDSMDVDKRPVTVKIVEDIAGVIPGATVDDLVKAMRPKSSGETYQSISKVVEDLVAD 317
Query: 291 AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+SA Q+ + ++V ++ D QK I+ +E + RL DGA E++ +LDL
Sbjct: 318 GWSAGQVL--YQELVFD-ETIPDIQKNKIVLVFSEVDKRLVDGADEHLSVLDL 367
>gi|190347750|gb|EDK40085.2| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 155/320 (48%), Positives = 208/320 (65%), Gaps = 11/320 (3%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + PWVEKYRPK +DDV Q V+VLKK L A+LPH LFYGPPGTGKTST++A
Sbjct: 16 RLEHTPWVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLALAR 75
Query: 89 QLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGKPCPPFKIVILD 144
+L+G D+ + R+LELNASD+RGI ++R KVK FA+ T AS + + PCPP+K++ILD
Sbjct: 76 ELYGPDLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLIILD 135
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT+ AQAALRRTME + TRFCLICNY++ II PL SRCSKFRFKPLA + + R
Sbjct: 136 EADSMTYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKFRFKPLANDNAVQR 195
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG----GEGIVNEDVLEVT 260
L+YI +QE + D L+ S GD+RRAIT LQS ARL I + E+
Sbjct: 196 LRYIVQQEELNVDEDVFSYLLTISNGDLRRAITYLQSAARLASTTTEETTISAATLREIA 255
Query: 261 GVIPNPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 317
GV+P ++ L L+ + + DL+ + + A Q+ DQ H++ + + S+S + K
Sbjct: 256 GVVPEEQLKILHNTLEDKDVSAITSVVGDLVSQGWGAQQVLDQLHELYVHSDSISTETKN 315
Query: 318 LILEKLAECNARLQDGASEY 337
+ E + RL +GA E+
Sbjct: 316 RAARLMFETDRRLNNGADEH 335
>gi|308807567|ref|XP_003081094.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
gi|116059556|emb|CAL55263.1| replication factor C 37 kDa subunit (ISS) [Ostreococcus tauri]
Length = 342
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 161/321 (50%), Positives = 215/321 (66%), Gaps = 7/321 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q++VV VL++ L ++PH LFYGPPGTGKT+ +A QL+G
Sbjct: 17 PWVEKYRPKTVRDVASQEQVVRVLEQALETGNMPHCLFYGPPGTGKTTCALAIAKQLYGP 76
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++Y++R+ ELNASD+RGI V+RDKVKTFA A G G P PP+KI+ILDEAD+MT
Sbjct: 77 ELYKQRVKELNASDERGISVVRDKVKTFAS-LAVGAPAPGYPSPPYKILILDEADAMTTD 135
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+A+RR ME +K TRF L+CNYV+ II P+TSRC+KFRF+PLA TM TRL+YI EQE
Sbjct: 136 AQSAMRRMMETYSKVTRFFLLCNYVTKIIDPITSRCAKFRFQPLALETMTTRLKYIAEQE 195
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
S+ + SGGDMR+AIT LQS ARL G+ + ++EV G IP+ + LL
Sbjct: 196 SLELSDDVFPACSKHSGGDMRKAITLLQSAARLFSGK-VDAAGIVEVAGYIPDVKLTTLL 254
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
K F + ++ED++ + YS ++ DQ DIV+ A SD+ K I K+ E +
Sbjct: 255 DLCKSGDFDKAQAHMEDILRDGYSGIKIMDQLSDIVLEADC-SDEIKGDIFMKMGEVDRA 313
Query: 330 LQDGASEYIQILDLGSIVIKA 350
L GA E +Q+ + S IK+
Sbjct: 314 LAQGADEGLQLATVVSSAIKS 334
>gi|159476624|ref|XP_001696411.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|158282636|gb|EDP08388.1| DNA replication factor C complex subunit 4 [Chlamydomonas
reinhardtii]
gi|294845967|gb|ADF43126.1| RFC4p [Chlamydomonas reinhardtii]
Length = 332
Score = 305 bits (782), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 159/319 (49%), Positives = 209/319 (65%), Gaps = 11/319 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + +V Q+EVV+ L + L A+LPH LFYGPPGTGKTST +A QL+G
Sbjct: 5 PWVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGP 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+KVK FA TA G G PCPP+K++ILDEADSMT
Sbjct: 65 ELMKSRVLELNASDERGIHVVREKVKAFAA-TAVGAPVPGYPCPPYKLLILDEADSMTQD 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME ++ TRF ICNYVS II+PL SRC+KFRFKPL M R+++ICE+E
Sbjct: 124 AQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHICERE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL- 271
SV AL+TL SGGD+RRAI LQS ARL GG + +L+V+G + + L
Sbjct: 184 SVTLGPGALDTLSAVSGGDLRRAINTLQSAARLGGGH-VDRATLLDVSGQVAPEVVSSLA 242
Query: 272 ------LKVDSFQVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLA 324
F L+K ++++I E Y+A Q+ Q +++ A SD + LE LA
Sbjct: 243 AACRATGAAGRFGALQKQVQNIIAEGYAAQQVLLQLQAELLSGADGGSDLRLCGALEALA 302
Query: 325 ECNARLQDGASEYIQILDL 343
+ L GA E +Q+L++
Sbjct: 303 GADYSLVVGADEALQLLNV 321
>gi|323507744|emb|CBQ67615.1| probable RFC2-DNA replication factor C, 41 KD subunit [Sporisorium
reilianum SRZ2]
Length = 385
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 163/334 (48%), Positives = 211/334 (63%), Gaps = 32/334 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q+ V+VLKK L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 30 PWVEKYRPKTIDDVAAQEHTVAVLKKTLMSNNLPHMLFYGPPGTGKTSTILALARQLFGP 89
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+K+K FA+ + ++G PCPPFKI+ILDEADSMT
Sbjct: 90 ELMKTRVLELNASDERGISVVREKIKNFAKLAVTN-PKEGFPCPPFKIIILDEADSMTQD 148
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR ME+ ++ TRFCL+CNYV+ II+PL SRCSKFRF+ L ++ TRL+ I E
Sbjct: 149 AQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTSSTKTRLEMIASAE 208
Query: 213 SV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG-----IVNEDVLEVTGVIPNP 266
SV D L+TL+ TS GD+RRAIT LQS +RL G + +E ++E+ GV+P
Sbjct: 209 SVSFQDSTVLDTLISTSDGDLRRAITYLQSASRLHSIAGDEKSSVTSESIVEIAGVVPTR 268
Query: 267 WIEKLL------------------------KVDSFQVLEKYIEDLILEAYSATQLFDQFH 302
I L K D+F + + + E YS TQL Q H
Sbjct: 269 VITSLADAVGIEAYNADDDVEMEAVGAPAKKRDAFDRIRDEVRIITREGYSITQLLVQLH 328
Query: 303 DIVMSASSLSDKQKALILEKLAECNARLQDGASE 336
D V++ +L K KA +AE + L DGA E
Sbjct: 329 DYVIAHPTLLAKIKAKAALLMAEMDKCLIDGADE 362
>gi|303274701|ref|XP_003056666.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226461018|gb|EEH58311.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 331
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 156/319 (48%), Positives = 210/319 (65%), Gaps = 8/319 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP+ I DV Q+EVV L+K L A++PH LFYGPPGTGKT+ +A C QL+G
Sbjct: 7 VPWVEKYRPRKIGDVSHQEEVVRTLQKALETANMPHMLFYGPPGTGKTTCALAICRQLYG 66
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
D+++ R+LELNASD+RGI V+R+K+K FA TA G G PCPP+KI+ILDEADSMT
Sbjct: 67 PDLFKSRVLELNASDERGISVVRNKIKGFAS-TAVGQAVPGYPCPPYKILILDEADSMTT 125
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRRTME +K TRF ++CNYVS II+P+ SRC+KFRFKPL M RL++I E+
Sbjct: 126 DAQSALRRTMETHSKVTRFFILCNYVSRIIEPIASRCAKFRFKPLGSEVMSDRLKHIAER 185
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + + + SGGDMR+AIT LQS ARL G + + ED++ V G I + +L
Sbjct: 186 EGLTLGEGVYDAAAKHSGGDMRKAITLLQSSARLFGAKELTGEDIIAVAGAIAEDDVAEL 245
Query: 272 LKVDSFQVLEKYIEDL---ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
L + ++ I L + + + Q+ QF D V ++ + SD KA I AE +
Sbjct: 246 LDLCGKNAFDRAIGKLDVMLRDGFPGLQILTQFADAVTNSENCSDGVKARICLAAAEADK 305
Query: 329 RLQDGASEYIQILDLGSIV 347
L DG+ + +Q LG++V
Sbjct: 306 ALIDGSDDSLQ---LGAVV 321
>gi|358367795|dbj|GAA84413.1| DNA replication factor C subunit Rfc2 [Aspergillus kawachii IFO
4308]
Length = 389
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 160/360 (44%), Positives = 226/360 (62%), Gaps = 33/360 (9%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
SK + S + + K PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPPGT
Sbjct: 20 SKPKPTDSKEEQAKQQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGT 79
Query: 78 GKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQD-- 131
GKTST++A LFG +YR RILELNASD+RGI ++RDK+K FA+ ++G +++
Sbjct: 80 GKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVRDKIKNFARAQLTHSTGLSEEYL 139
Query: 132 -GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRCSK
Sbjct: 140 AQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSK 199
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG-- 248
FRFK L + RL++I + E++ + ++ L+ S GDMRRAIT +QS A+L G
Sbjct: 200 FRFKALDNSAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGAGR 259
Query: 249 -----------------EGIVNEDVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYI 284
E I + E+ GV+P ++ L++ S++ + K +
Sbjct: 260 AGKKDEDEDEEMTDQESEVITIRTIEEIAGVVPEGVLDALVQAMQPKKIGSSYEAVAKVV 319
Query: 285 EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
D+I + +SATQL Q + V+ ++ D QK I+ ++ + RL DGA E++ ILD+
Sbjct: 320 TDIIADGWSATQLLLQLYRRVVFNDAIPDIQKNKIVMAFSDMDRRLVDGADEHLSILDIA 379
>gi|212546601|ref|XP_002153454.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
gi|210064974|gb|EEA19069.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
marneffei ATCC 18224]
Length = 394
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 158/362 (43%), Positives = 225/362 (62%), Gaps = 35/362 (9%)
Query: 17 SSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
+SK S + + + + PWVEKYRPK++DDV Q +VL++ L ++LPH LFYGPPG
Sbjct: 23 NSKQKTSENAEEKARLQPWVEKYRPKSLDDVAAQDHTTTVLQRTLQASNLPHMLFYGPPG 82
Query: 77 TGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ---QTASGFN--- 129
TGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ SG +
Sbjct: 83 TGKTSTILALAKSLFGPTLYRTRILELNASDERGINIVREKIKDFARTQLSQPSGLDAAY 142
Query: 130 QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
++ PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRCS
Sbjct: 143 REKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCS 202
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
KFRFK L + R+ I E + D +ETL+ S GD+RRAIT LQS ARL G
Sbjct: 203 KFRFKALDGVSAGDRISEIAAAEGLTLDEGVVETLIRCSEGDLRRAITYLQSAARLVGAT 262
Query: 250 GIVNED---------------------VLEVTGVIPNPWIEKLLKV-------DSFQVLE 281
V +D V E+ GV+P ++KL++ +++ +
Sbjct: 263 QPVKKDSQDDTEMTDADSAPALITVRTVEEIAGVVPESVLDKLMQAMQPKKMGSAYEAVA 322
Query: 282 KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQIL 341
+ D++ + +SATQ+ Q + ++ ++ D QK I+ +E + RL DG+ E++ IL
Sbjct: 323 AVVSDIVADGWSATQILTQLYRRIVFNDAIPDIQKNKIVMVFSEMDKRLLDGSDEHLSIL 382
Query: 342 DL 343
D+
Sbjct: 383 DM 384
>gi|363750506|ref|XP_003645470.1| hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889104|gb|AET38653.1| Hypothetical protein Ecym_3150 [Eremothecium cymbalariae
DBVPG#7215]
Length = 350
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 157/322 (48%), Positives = 213/322 (66%), Gaps = 12/322 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK ++DV Q V VLKK L A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 24 PWVEKYRPKKLEDVTAQSHTVKVLKKTLESANLPHMLFYGPPGTGKTSTILALTKELFGP 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ T + +++ PCPP+KI+ILDEADSM
Sbjct: 84 ELMKTRVLELNASDERGISIVREKVKNFARLTVTTPSKEDLERHPCPPYKIIILDEADSM 143
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFKPL + LTRLQYI
Sbjct: 144 TADAQSALRRTMETYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNSNALTRLQYIA 203
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPN 265
+ES+ AL+ +++ S GD+R+ IT LQS A+ L E I V E+ GV+P
Sbjct: 204 SEESLTLADGALDKILDISEGDLRKGITLLQSVAKAVAYLDNAE-ITTSQVEELAGVVPE 262
Query: 266 PWIEKLL-KVDSFQVLE--KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
P + +L+ K++S + E Y+ I + A + Q HD + L + K +
Sbjct: 263 PVLLELVNKIESKDLKEIINYVNSFIKSGWCAASVISQLHDYYVKNDELDTEFKNKLFLL 322
Query: 323 LAECNARLQDGASEYIQILDLG 344
L E ++RL +G +E++Q+L+L
Sbjct: 323 LFETDSRLANGTNEHLQLLNLA 344
>gi|429856209|gb|ELA31133.1| activator 1 41 kda subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 381
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 157/336 (46%), Positives = 217/336 (64%), Gaps = 26/336 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q V+VL++ L ++LPH LFYGPPGTGKTST++A +L+G
Sbjct: 33 PWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELYGP 92
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
+M + R+LELNASD+RGI ++R+KVK FA+ + + K P PPFKI+ILDEADSM
Sbjct: 93 EMMKSRVLELNASDERGISIVREKVKDFARMQLTNPTAEYKKRYPVPPFKIIILDEADSM 152
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL+ I
Sbjct: 153 TQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLEDIA 212
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG---------------EGIVNE 254
+ E V + A++ L++ S GD+R+AIT LQS ARL G + + +
Sbjct: 213 QNEGVQLEDGAVDALIKCSEGDLRKAITFLQSAARLVGAGNEEKSADDAMDVDKKPVTVK 272
Query: 255 DVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS 307
V ++ GVIP I+KL+ D++Q + K +ED++ + +SA Q+ Q + ++
Sbjct: 273 TVEDIAGVIPENTIDKLVSAIRPQRAGDTYQNVAKVVEDMVADGWSAGQVVSQLYQAIVF 332
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
++ D QK I+ +E + RL DGA E++ ILDL
Sbjct: 333 DETIPDVQKNKIVLIFSEVDKRLVDGADEHLSILDL 368
>gi|169767788|ref|XP_001818365.1| replication factor C subunit 2 [Aspergillus oryzae RIB40]
gi|83766220|dbj|BAE56363.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391870557|gb|EIT79737.1| replication factor C, subunit RFC4 [Aspergillus oryzae 3.042]
Length = 391
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 166/364 (45%), Positives = 225/364 (61%), Gaps = 35/364 (9%)
Query: 16 SSSKTSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
SS T GK + + PWVEKYRPKT+DDV Q +VL++ L ++LPH LFYGP
Sbjct: 18 SSGSKQKPTDGKEEHAQQQPWVEKYRPKTLDDVAAQDHTTNVLQRTLQASNLPHMLFYGP 77
Query: 75 PGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQ 130
PGTGKTST++A LFG +YR RILELNASD+RGI ++R+KVK FA+ S G ++
Sbjct: 78 PGTGKTSTILALAKSLFGPALYRSRILELNASDERGIAIVREKVKDFARVQLSHPTGVDK 137
Query: 131 ---DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
+ PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCL+CNYV+ II+PL SR
Sbjct: 138 SYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIEPLASR 197
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
CSKFRFKPL + RL I + E++ + ++ L++ S GD+RRAIT +QS ARL G
Sbjct: 198 CSKFRFKPLDNSAAGDRLAQIAKLENLELEDGVVDKLIQCSDGDLRRAITYMQSGARLVG 257
Query: 248 GEG--------------------IVNEDVLEVTGVIPNPWIEKLLKV-------DSFQVL 280
G I V E+ GVIP +++L++ S++ +
Sbjct: 258 ATGNSGRQDGGEDAEMTDASSQVITVRMVEEIAGVIPESVLDQLVQAMQPKKIGSSYEAV 317
Query: 281 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
K D++ + +SATQL Q + V+ ++ D QK I+ +E + RL DGA E++ I
Sbjct: 318 SKVTTDIVADGWSATQLLAQLYRRVVYNDAIPDIQKNKIVMVFSEMDKRLVDGADEHLSI 377
Query: 341 LDLG 344
LD+
Sbjct: 378 LDVA 381
>gi|340501071|gb|EGR27891.1| replication factor C, activator 1, putative [Ichthyophthirius
multifiliis]
Length = 357
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 153/342 (44%), Positives = 226/342 (66%), Gaps = 22/342 (6%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+N +PWVEKYRP ID+V Q+EVV L+ L +LPH +F+GPPGTGKTS+++A
Sbjct: 6 TQNNRMPWVEKYRPNKIDEVSYQEEVVKSLEGVLQTGNLPHIIFHGPPGTGKTSSILAFA 65
Query: 88 HQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG-------FNQDGKP----- 134
QL+G + YR+RILELNASDDRGIQV+R+K+K FAQQ F Q+ K
Sbjct: 66 KQLYGPNFYRDRILELNASDDRGIQVVREKIKKFAQQVVVKNPDKQFFFYQNQKSYQLFQ 125
Query: 135 -----CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
CP +KI+ILDEADSMT AQ+ALRR +E + +TRFC+ICNY++ II+PL SRC
Sbjct: 126 IRNYKCPNYKIIILDEADSMTTEAQSALRRIIEDNSSTTRFCIICNYITKIIEPLASRCV 185
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
KFRFKP+ E L +L+ IC++E + + +ALE L+ S GD+R+++ +QS + L +
Sbjct: 186 KFRFKPIVEEAQLCKLKEICDKEYIQYEDQALEKLIHISNGDLRKSVNLIQSASTL-FNK 244
Query: 250 GIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
I + VLE++G IP+ + L +V + L K ++ I + +SA QL +QF DI++
Sbjct: 245 SINLQTVLEISGSIPDEHVINLYEVLLQKNLNELRKSVQQFIYQGFSADQLINQFSDIIL 304
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVI 348
++ +++ +KA I EK+A+ + L + A +QIL++ S ++
Sbjct: 305 YSNDINEIKKARIFEKIAQADQGLNERADSELQILNMFSCIL 346
>gi|331215451|ref|XP_003320406.1| replication factor C subunit 2/4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309299396|gb|EFP75987.1| replication factor C subunit 2/4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 382
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 159/370 (42%), Positives = 227/370 (61%), Gaps = 38/370 (10%)
Query: 4 FLRTGKLGK-DAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS 62
F+R G K +AP++ +S +PW+EKYRPK+I+ V Q+ +L K L+
Sbjct: 6 FMRAGAAAKKNAPTADSSSSQPPAA-----LPWIEKYRPKSIESVQGQEGTTKILSKALN 60
Query: 63 GADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFA 121
ADLPH LFYGPPGTGKTST++A LFG ++ + R+LELNASD+RGI V+R+K+K FA
Sbjct: 61 RADLPHMLFYGPPGTGKTSTILALARDLFGPELMKSRVLELNASDERGISVVREKIKNFA 120
Query: 122 QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
+ + S G PCP +KI+ILDEADSMT AQ+ALRR ME +K TRFCLICNYV+ II
Sbjct: 121 KVSISPATS-GYPCPAYKIIILDEADSMTQDAQSALRRIMENYSKITRFCLICNYVTRII 179
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+P+ SRCSKFRFKPL+ + ++L I ES+ L++L+ S GD+RR+IT LQS
Sbjct: 180 EPIVSRCSKFRFKPLSVSGTRSKLTEISTLESIKISDNVLDSLISISAGDLRRSITFLQS 239
Query: 242 CARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK----------------------VDS--- 276
++L + I+ +D+ E+ G++P + +LL+ VD
Sbjct: 240 ASKLATSDEILAQDIEEIGGIVPQKLMGRLLEAVGIEVRGQVGAGGDEDVEMSDVDQKKG 299
Query: 277 -----FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQ 331
F+ ++ + ++ E YSA Q+ +Q HD+++ + + K KALI L E + L
Sbjct: 300 RQKTPFEKIQDVVTSVLREGYSAVQIINQLHDLILLDTLIPSKPKALISVALGEADKYLN 359
Query: 332 DGASEYIQIL 341
DGA E +QIL
Sbjct: 360 DGADEGLQIL 369
>gi|336272567|ref|XP_003351040.1| hypothetical protein SMAC_04344 [Sordaria macrospora k-hell]
gi|380090807|emb|CCC04977.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 387
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 165/369 (44%), Positives = 228/369 (61%), Gaps = 34/369 (9%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
K K A ++ ++ K + PWVEKYRPKT+ DV Q ++VL++ L +LPH
Sbjct: 8 KARKAAAANGTSNPEKQTKETPRAQPWVEKYRPKTLSDVTAQDHTITVLQRTLQATNLPH 67
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---T 124
LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 68 MLFYGPPGTGKTSTILALAKELYGPELIKSRVLELNASDERGISIVREKVKDFARMQLTN 127
Query: 125 ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
S + PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL
Sbjct: 128 PSAAYKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 187
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRCSKFRFK L + RL+ I + E V + A++ L++ S GD+R+AIT LQS AR
Sbjct: 188 ASRCSKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAAR 247
Query: 245 LKG-------------GEG---------IVNEDVLE-VTGVIPNPWIEKLLK-------V 274
L G GEG +V V+E + GVIP+ I++LLK
Sbjct: 248 LVGAVAATAKDGEQKEGEGGDEMEVDAKLVTVKVVEDIAGVIPDDTIQRLLKAMRPRAGA 307
Query: 275 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 334
D+++ + K +E+++ + +SA Q Q + V+ + D QK I+ +E + RL DGA
Sbjct: 308 DTYRAVAKVVEEMVADGWSAGQTMTQLYQAVVYDEMIPDVQKNKIVMVFSEVDKRLVDGA 367
Query: 335 SEYIQILDL 343
E++ ILDL
Sbjct: 368 DEHLSILDL 376
>gi|71003365|ref|XP_756363.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
gi|46095800|gb|EAK81033.1| hypothetical protein UM00216.1 [Ustilago maydis 521]
Length = 384
Score = 304 bits (779), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 162/333 (48%), Positives = 210/333 (63%), Gaps = 31/333 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTID+V Q+ V+VLKK L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 30 PWVEKYRPKTIDEVAAQEHTVAVLKKTLLSNNLPHMLFYGPPGTGKTSTILALARQLFGP 89
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+K+K FA+ + ++G PCPPFKI+ILDEADSMT
Sbjct: 90 ELMKTRVLELNASDERGITVVREKIKNFAKLAVTN-PKEGFPCPPFKIIILDEADSMTQD 148
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR ME+ ++ TRFCL+CNYV+ II+PL SRCSKFRF+ L ++ RL+ I E
Sbjct: 149 AQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTSSTKARLEMIASAE 208
Query: 213 SVMC-DFKALETLVETSGGDMRRAITCLQSCARLKGGEG-----IVNEDVLEVTGVIPNP 266
SV D L+TL+ TS GD+RRAIT LQS +RL G I +E ++E+ GV+PN
Sbjct: 209 SVAFRDSGVLDTLISTSDGDLRRAITYLQSASRLHSLTGEDKSAITSESIVEIAGVVPNR 268
Query: 267 WIEKLL-----------------------KVDSFQVLEKYIEDLILEAYSATQLFDQFHD 303
I L K D+F+ + + + E YS TQL Q HD
Sbjct: 269 VIASLADAIGIEAYSPDDDVEMQPTGGAKKRDTFERIRDEVRIITREGYSITQLLLQLHD 328
Query: 304 IVMSASSLSDKQKALILEKLAECNARLQDGASE 336
V+ + K KA +AE + L DGA E
Sbjct: 329 HVIGHPTSQAKIKAKAALLMAEMDKSLTDGADE 361
>gi|347829788|emb|CCD45485.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 379
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 161/372 (43%), Positives = 230/372 (61%), Gaps = 33/372 (8%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M +F +A S+ + K N+ PWVEKYRPK + DV Q ++VL++
Sbjct: 1 MASFFDIKARKAEAASNGTVNAKEEAKKNNRMQPWVEKYRPKGLGDVTAQDHTITVLQRT 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L ++LPH LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK
Sbjct: 61 LQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPELMKSRVLELNASDERGISIVREKVKD 120
Query: 120 FAQQTASGFN---QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
FA+ S + + PCPP+KI+ILDEADSMT AQ+ALRRTME ++ TRFCLICNY
Sbjct: 121 FARMQLSNPSPAYRQKYPCPPYKIIILDEADSMTQDAQSALRRTMETYSRITRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
V+ II PL SRCSKFRFK L + + R++ I ++E V + A+E L++ S GD+R+AI
Sbjct: 181 VTRIIDPLASRCSKFRFKSLDKGNAVVRVREIADKEGVRLEEGAVEALIKCSEGDLRKAI 240
Query: 237 TCLQSCARLKG-----GEGIVNED-------------VLEVTGVIPNPWIEKLLKVDS-- 276
T LQS ARL G GE N D V ++ GVIP+ IEKL+K
Sbjct: 241 TYLQSAARLVGAVSQEGEERDNADKMDVDEKMVTVSSVEDIAGVIPDNTIEKLVKAMQPR 300
Query: 277 -----FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQ 331
++ + K + D++ + +S TQL+ ++++ ++D K I+ +E + RL
Sbjct: 301 SRGVVYEAVSKVVVDMVADGWSGTQLY----QTIINSELIADSHKNKIVALFSEADKRLV 356
Query: 332 DGASEYIQILDL 343
DGA E++ ILDL
Sbjct: 357 DGADEHLTILDL 368
>gi|294846008|gb|ADF43166.1| RFC4m [Chlamydomonas reinhardtii]
Length = 332
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 158/319 (49%), Positives = 208/319 (65%), Gaps = 11/319 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + +V Q+EVV+ L + L A+LPH LFYGPPGTGKTST +A QL+G
Sbjct: 5 PWVEKYRPKNVSEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGP 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+KVK FA TA G G PCPP+K++ILDEADSMT
Sbjct: 65 ELMKSRVLELNASDERGIHVVREKVKAFAA-TAVGAPVPGYPCPPYKLLILDEADSMTQD 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME ++ TRF ICNYVS II+PL SRC+KFRFKPL M R+++ICE+E
Sbjct: 124 AQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPAIMAGRIEHICERE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL- 271
SV AL+TL SGGD+RRAI LQS ARL G + +L+V+G + + L
Sbjct: 184 SVTLGPGALDTLSAVSGGDLRRAINTLQSAARLGAGH-VDRATLLDVSGQVAPEVVSSLA 242
Query: 272 ------LKVDSFQVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLA 324
F L+K ++++I E Y+A Q+ Q +++ A SD + LE LA
Sbjct: 243 AACRATGAAGRFGALQKQVQNIIAEGYAAQQVLLQLQAELLSGADGGSDLRLCGALEALA 302
Query: 325 ECNARLQDGASEYIQILDL 343
+ L GA E +Q+L++
Sbjct: 303 GADYSLVVGADEALQLLNV 321
>gi|145350673|ref|XP_001419724.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579956|gb|ABO98017.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 342
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 156/322 (48%), Positives = 215/322 (66%), Gaps = 7/322 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
PWVEKYRP+ + DV Q+++V VL+ L ++PH LFYGPPGTGKT+T +A +L+G
Sbjct: 16 APWVEKYRPRVVKDVASQEQIVGVLENALKTGNMPHCLFYGPPGTGKTTTALAIAKELYG 75
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y++R+ ELNASD+RGI V+R+K+KTFA Q A G G P PP+KI+ILDEAD+MT
Sbjct: 76 PELYKQRVKELNASDERGISVVRNKIKTFASQ-AVGAPAPGYPSPPYKILILDEADAMTG 134
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRR ME +K TRF L+CNYV+ II P+ SRC+KFRF PLA+ TM RL++I EQ
Sbjct: 135 DAQSALRRMMETYSKVTRFFLLCNYVTKIIDPIASRCAKFRFSPLAQETMGARLKFIGEQ 194
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + + SGGDMR+AIT LQS ARL G+ I ++EV G IP+ I+K+
Sbjct: 195 EGLEMSDDVFAMCSKHSGGDMRKAITLLQSAARLFAGK-ISGASIVEVAGHIPDEKIKKM 253
Query: 272 LKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
+ F+ + ++ED++ + +S ++ DQ+ D V+ A SD+ KA I KL E +
Sbjct: 254 YDLCREGKFEEAQAHMEDILRDGFSGLKILDQYSDYVLEADC-SDEVKAEIFIKLGEVDR 312
Query: 329 RLQDGASEYIQILDLGSIVIKA 350
L GA E +Q+ L S IKA
Sbjct: 313 FLAQGADEGMQLATLVSTSIKA 334
>gi|146414968|ref|XP_001483454.1| hypothetical protein PGUG_04183 [Meyerozyma guilliermondii ATCC
6260]
Length = 347
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 154/322 (47%), Positives = 208/322 (64%), Gaps = 11/322 (3%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
+ R + PWVEKYRPK +DDV Q V+VLKK L A+LPH LFYGPPGTGKTST++A
Sbjct: 14 QQRLEHTPWVEKYRPKNLDDVASQDHAVNVLKKSLVSANLPHMLFYGPPGTGKTSTVLAL 73
Query: 87 CHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGKPCPPFKIVI 142
+L+G D+ + R+LELNASD+RGI ++R KVK FA+ T AS + + PCPP+K++I
Sbjct: 74 ARELYGPDLIKSRVLELNASDERGIAIVRQKVKNFARLTVSNASPEDLEKYPCPPYKLII 133
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT+ AQAALRRTME + TRFCLICNY++ II PL RCSKFRFKPLA + +
Sbjct: 134 LDEADSMTYDAQAALRRTMETYSGVTRFCLICNYITRIIDPLALRCSKFRFKPLANDNAV 193
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG----GEGIVNEDVLE 258
RL+YI +QE + D L+ S GD+RRAIT LQS ARL I + E
Sbjct: 194 QRLRYIVQQEELNVDEDVFSYLLTISNGDLRRAITYLQSAARLASTTTEETTISAATLRE 253
Query: 259 VTGVIPNPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 315
+ GV+P ++ L L+ + + DL+L+ + A Q+ DQ H++ + + S+ +
Sbjct: 254 IAGVVPEEQLKILHNTLEDKDVSAITSVVGDLVLQGWGAQQVLDQLHELYVHSDSILTET 313
Query: 316 KALILEKLAECNARLQDGASEY 337
K + E + RL +GA E+
Sbjct: 314 KNRAARLMFETDRRLNNGADEH 335
>gi|313229768|emb|CBY18583.1| unnamed protein product [Oikopleura dioica]
Length = 350
Score = 303 bits (776), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 229/353 (64%), Gaps = 15/353 (4%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLK 58
ME FL G S +K S + GK + P +PW+EKYRPK ++DV Q+EVV++LK
Sbjct: 1 MEQFLIGG-------SGAKAS-TGGGKKKAAPRVLPWIEKYRPKGVNDVCAQEEVVAMLK 52
Query: 59 KCL-SGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117
L G +LP+ LFYGPPGTGKTST++A +FG++ ER+ ELNASD+RGI V+R+KV
Sbjct: 53 AVLIEGKELPNMLFYGPPGTGKTSTILAMARDMFGNLASERVCELNASDERGIAVVREKV 112
Query: 118 KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
K FA TA+ DGK CP FK++ILDEADSMT +AQ ALRRTME +KSTRFCL+CNYV
Sbjct: 113 KNFAMTTANSQRADGKKCPNFKLIILDEADSMTKSAQEALRRTMEVYSKSTRFCLLCNYV 172
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
S II P+TSR +KFRF+ L + ++++I E E+V A+E L+ + GDMRRA+
Sbjct: 173 SRIIDPITSRTAKFRFRLLPKEIQYNQIRHIREAENVQISENAVEELISVAAGDMRRAVN 232
Query: 238 CLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSA 294
LQS RL E I +DV +V + P I++++ + S++ + ++ L+ + Y A
Sbjct: 233 FLQSLHRLHEDE-ITPDDVRDVAILCPAEKIDEVIREARSKSYENMLTKVQALLQDGYPA 291
Query: 295 TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
Q Q D V++ ++ D QK I+ ++ + + L DGA E +QIL + S++
Sbjct: 292 GQFMHQLQDAVIADDAIEDFQKVNIINQIGKADHALTDGADEKVQILAIVSVL 344
>gi|66808355|ref|XP_637900.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74853593|sp|Q54MD4.1|RFC4_DICDI RecName: Full=Probable replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|60466332|gb|EAL64392.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 150/325 (46%), Positives = 217/325 (66%), Gaps = 14/325 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWV KYRPKT+DDV Q++V+S LKK L+ +LPH LFYGPPGTGKTST++A ++G
Sbjct: 11 PWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGP 70
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFA----QQTASGFNQDGKPCPPFKIVILDEADS 148
++ ++R+LELNASD+RGI+V+R K+K FA +T +G P FK++ILDEADS
Sbjct: 71 ELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTG---TSNPGATFKLIILDEADS 127
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRRT+E +K+TRFCL+CNY+S II PL SRC+KFRFKPL + RL++I
Sbjct: 128 MTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFI 187
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPNPW 267
+QE + C+ + + S GDMR+AIT LQS R + ++EDV+ + G +P
Sbjct: 188 SQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANK--ISEDVIYNIAGSLPPQL 245
Query: 268 IEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
I++L+ K +SF L+ ++ +I + Y +Q+ Q D V++ L+ QK+ I K+
Sbjct: 246 IKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIG 305
Query: 325 ECNARLQDGASEYIQILDLGSIVIK 349
+ L DG+ E++Q+ DL S ++K
Sbjct: 306 NVDRNLIDGSEEFLQLFDLSSYIMK 330
>gi|38567232|emb|CAE76524.1| probable replication factor protein [Neurospora crassa]
Length = 366
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 155/324 (47%), Positives = 217/324 (66%), Gaps = 13/324 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q ++VL++ L ++LPH LFYGPPGTGKTST++A +L+G
Sbjct: 33 PWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGP 92
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFNQDGKPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ S + PCPPFK++ILDEADSM
Sbjct: 93 ELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKLIILDEADSM 152
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL+ I
Sbjct: 153 TQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLEEIA 212
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG-IVNEDVLE-VTGVIPNPW 267
+ E V + A++ L++ S GD+R+AIT LQS ARL + +V V+E + GVIP+
Sbjct: 213 QLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLMEVDAKLVTVKVVEDIAGVIPDDT 272
Query: 268 IEKLLK-------VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
I++LL+ VD++ + K +E+++ + +SA Q Q + V+ + D QK I+
Sbjct: 273 IQRLLEAMRPRAGVDTYPAVAKVVEEMVADGWSAGQTMTQLYQAVVFDEMIPDVQKNKIV 332
Query: 321 EKLAECNARLQDGASEYIQILDLG 344
+E + RL DGA E++ +LDL
Sbjct: 333 MVFSEVDKRLVDGADEHLSVLDLA 356
>gi|374109199|gb|AEY98105.1| FAFR422Wp [Ashbya gossypii FDAG1]
Length = 349
Score = 303 bits (775), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 151/321 (47%), Positives = 213/321 (66%), Gaps = 10/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ +DDV Q ++VLK+ L A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 23 PWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADSM 149
+ + R+LELNASD+RGI ++R+KVK FA+ T + ++ PCPP+KI+ILDEADSM
Sbjct: 83 SLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEADSM 142
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFKPL L RL+ I
Sbjct: 143 TADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLEQIA 202
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVIPNP 266
+QE++ + ALE ++ + GD+R+AIT LQ+ A++ E I V E+ GV+P+
Sbjct: 203 QQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKITTAQVEELAGVVPDD 262
Query: 267 WIEKLL-KVDSFQVLE--KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 323
I+ L+ K++S + E K++ ++ + + + Q HD + L ++K I L
Sbjct: 263 IIKGLVEKIESKDLTEITKFVNKVVKSGWCGSSIISQLHDYYAENNELDAEKKTKIFLLL 322
Query: 324 AECNARLQDGASEYIQILDLG 344
+ ++RL +G E+IQ+LDL
Sbjct: 323 FKTDSRLSNGTDEHIQLLDLA 343
>gi|367007401|ref|XP_003688430.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
gi|357526739|emb|CCE65996.1| hypothetical protein TPHA_0O00240 [Tetrapisispora phaffii CBS 4417]
Length = 352
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 151/320 (47%), Positives = 209/320 (65%), Gaps = 10/320 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ +DDV Q V+VLK+ L A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 25 PWVEKYRPRNLDDVAAQDHAVAVLKRTLGSANLPHMLFYGPPGTGKTSTILALTKELFGP 84
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
+ + R+LELNASD+RGI ++R+KVK FA+ T S ++D PCPP+KI+ILDEADSM
Sbjct: 85 QLVKSRVLELNASDERGISIVREKVKNFARLTVSKPSKDDLENYPCPPYKIIILDEADSM 144
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L E L RL+Y+
Sbjct: 145 TADAQSALRRTMETYSTVTRFCLICNYVTRIIDPLASRCSKFRFKALDETNALDRLKYVA 204
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR---LKGGEGIVNEDVLEVTGVIPNP 266
QES + LE +++ S GD+RRAIT LQS ++ + I + V E+ GV+P
Sbjct: 205 TQESTKYEEGTLEKILQISAGDLRRAITLLQSVSKSSTFNKSDMITIKKVEELAGVVPES 264
Query: 267 WIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 323
I ++LK+ + + I +S + DQ HD +++ + S + K + L
Sbjct: 265 IINQILKIIESKDVDAITAFTRTFIKNGWSGAAVVDQLHDHYITSDNYSTQFKNSVSWIL 324
Query: 324 AECNARLQDGASEYIQILDL 343
+++L +G +E+IQ+L++
Sbjct: 325 FNADSKLLNGTNEHIQLLNV 344
>gi|350635059|gb|EHA23421.1| hypothetical protein ASPNIDRAFT_47138 [Aspergillus niger ATCC 1015]
Length = 758
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/360 (43%), Positives = 224/360 (62%), Gaps = 33/360 (9%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
SK + + + + K PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPPGT
Sbjct: 389 SKPKPTDNKEEQAKQQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGT 448
Query: 78 GKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQD-- 131
GKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ ++G ++
Sbjct: 449 GKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYL 508
Query: 132 -GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRCSK
Sbjct: 509 AQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSK 568
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG-- 248
FRFK L RL++I + E++ + ++ L+ S GDMRRAIT +QS A+L G
Sbjct: 569 FRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGAGR 628
Query: 249 -----------------EGIVNEDVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYI 284
E I + E+ GV+P ++ L++ S++ + K +
Sbjct: 629 AGKKDEDEDEEMTDQESEVITVRTIEEIAGVVPESVLDALVQAMQPKKIGSSYEAVAKVV 688
Query: 285 EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
D+I + +SATQL Q + V+ ++ D QK I+ ++ + RL DGA E++ ILD+
Sbjct: 689 TDIIADGWSATQLLLQLYRRVVFNDAIPDIQKNKIVMVFSDMDRRLVDGADEHLSILDVA 748
>gi|242822833|ref|XP_002487968.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
gi|218712889|gb|EED12314.1| DNA replication factor C subunit Rfc2, putative [Talaromyces
stipitatus ATCC 10500]
Length = 393
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 158/361 (43%), Positives = 222/361 (61%), Gaps = 34/361 (9%)
Query: 17 SSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
SSK S + + + + PWVEKYRPK++DDV Q +VL++ L ++LPH LFYGPPG
Sbjct: 23 SSKQKTSENAEEQARLQPWVEKYRPKSLDDVAAQDHTTAVLQRTLQASNLPHMLFYGPPG 82
Query: 77 TGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDG 132
TGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ SG +
Sbjct: 83 TGKTSTILALSKSLFGPALYRTRILELNASDERGINIVREKIKDFARTQLSHPSGLDAAY 142
Query: 133 K---PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
K PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRCS
Sbjct: 143 KAKYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCS 202
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
KFRFK L + R+ I + E + D ++TL+ S GD+RRAIT LQS ARL G
Sbjct: 203 KFRFKALDGVSAGDRINEIAQAEGLTLDDGVVDTLIRCSEGDLRRAITYLQSAARLVGAT 262
Query: 250 G--------------------IVNEDVLEVTGVIPNPWIEKLLKV-------DSFQVLEK 282
I + V E+ GV+P ++KL + +++ +
Sbjct: 263 STQKGKKDQEDTEMTDAGSSLITVQTVEEIAGVVPESVLDKLTQAMQPKKMGSAYEAVAS 322
Query: 283 YIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
+ D++ + +SATQ+ Q + + ++ D QK I+ +E + RL DG+ E++ ILD
Sbjct: 323 VVSDIVADGWSATQILTQLYRRTVFNDAIPDTQKNKIVMVFSEMDKRLLDGSDEHLSILD 382
Query: 343 L 343
+
Sbjct: 383 M 383
>gi|225562412|gb|EEH10691.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 394
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 155/347 (44%), Positives = 219/347 (63%), Gaps = 37/347 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+DDV Q+ V+VL++ L ++LPH LFYGPPGTGKTST++A L+G
Sbjct: 36 PWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYGP 95
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS------GFNQDGKPCPPFKIVILDEA 146
+YR RILELNASD+RGI ++R+K+K FA+ S ++ PCPPFKI+ILDEA
Sbjct: 96 QLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDEA 155
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRCSKFRFK L + RL+
Sbjct: 156 DSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRLE 215
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG------------------ 248
I E + + TL+ S GD+RRAIT LQS ARL G
Sbjct: 216 EIARMEKLRLADGCIRTLIRCSEGDLRRAITYLQSAARLVGSTEGTKQGGKDESGDTEMA 275
Query: 249 ----EGIVN-EDVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQ 296
+GI+ + + E+ GV+P+ +++L+K S++ + + + D++ + +SA+Q
Sbjct: 276 DAGEDGIITVKTIEEIAGVVPDDVVDRLIKALQPKKGRSSYEAVSQVVTDIVADGWSASQ 335
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ Q + I++ S+ D K I+ +E + RL DGA E++ +LDL
Sbjct: 336 MLTQLYQIIVFDDSIPDIHKNSIVMVFSEFDKRLIDGADEHLTLLDL 382
>gi|302308854|ref|NP_985969.2| AFR422Wp [Ashbya gossypii ATCC 10895]
gi|299790827|gb|AAS53793.2| AFR422Wp [Ashbya gossypii ATCC 10895]
Length = 349
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 151/321 (47%), Positives = 213/321 (66%), Gaps = 10/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ +DDV Q ++VLK+ L A+LPH LFYGPPGTGKTST++A +LFG
Sbjct: 23 PWVEKYRPRKLDDVASQAHAITVLKRTLESANLPHMLFYGPPGTGKTSTILALTKELFGP 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADSM 149
+ + R+LELNASD+RGI ++R+KVK FA+ T + ++ PCPP+KI+ILDEADSM
Sbjct: 83 SLMKSRVLELNASDERGISIVREKVKNFARLTVTNPTKEDLEQYPCPPYKIIILDEADSM 142
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFKPL L RL+ I
Sbjct: 143 TADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKFRFKPLDNVNALGRLEQIA 202
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVIPNP 266
+QE++ + ALE ++ + GD+R+AIT LQ+ A++ E I V E+ GV+P+
Sbjct: 203 QQEALSYEAGALEKVLHIAEGDLRKAITLLQTAAKMTSYMAAEKITIAQVEELAGVVPDD 262
Query: 267 WIEKLL-KVDSFQVLE--KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 323
I+ L+ K++S + E K++ ++ + + + Q HD + L ++K I L
Sbjct: 263 IIKGLVEKIESKDLTEITKFVNKVVKSGWCGSSIISQLHDYYAENNELDAEKKTKIFLLL 322
Query: 324 AECNARLQDGASEYIQILDLG 344
+ ++RL +G E+IQ+LDL
Sbjct: 323 FKTDSRLSNGTDEHIQLLDLA 343
>gi|320032378|gb|EFW14331.1| DNA replication factor C subunit Rfc2 [Coccidioides posadasii str.
Silveira]
Length = 393
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 159/363 (43%), Positives = 224/363 (61%), Gaps = 36/363 (9%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
SK+ + ++K PWVEKYRPKT+DDV Q V+VL++ L ++LPH LFYGPPGT
Sbjct: 21 SKSKSTADEADKSKLQPWVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGT 80
Query: 78 GKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGK-- 133
GKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ Q + D +
Sbjct: 81 GKTSTILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYR 140
Query: 134 ---PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRCSK
Sbjct: 141 KQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRIIDPLASRCSK 200
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG-- 248
FRFK L + TRL+ I + E + D ++ L+ S GD+RRAIT +QS ARL G
Sbjct: 201 FRFKSLDGSAAGTRLEEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQSAARLVGSGL 260
Query: 249 -------------------EGIVN-EDVLEVTGVIPNPWIEKLLKV-------DSFQVLE 281
G++ + V E+ GV+P+ + +L+ ++ +
Sbjct: 261 SGKSGKDESGDEVMTDADQSGVITVQTVEEIAGVVPDKVVNRLIDAMQPKKGGSVYEGVA 320
Query: 282 KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQIL 341
+ + D++ + +SA Q+ Q + ++ S++D QK I+ +E + RL DGA E + IL
Sbjct: 321 RVVTDIVADGWSAGQMLSQMYQAIVFNESIADIQKNDIVLVFSEYDKRLIDGADEQLSIL 380
Query: 342 DLG 344
DL
Sbjct: 381 DLA 383
>gi|440640436|gb|ELR10355.1| hypothetical protein GMDG_04737 [Geomyces destructans 20631-21]
Length = 389
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 221/352 (62%), Gaps = 32/352 (9%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+GK + PWVEKYRPK++ DV Q ++VL++ L ++LPH L+YGPPGTGKTST++
Sbjct: 27 NGKDNTRLQPWVEKYRPKSLADVTAQDHTITVLQRTLQSSNLPHMLYYGPPGTGKTSTIL 86
Query: 85 AACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTAS----GFNQDGKPCPPFK 139
A L+G ++ R+LELNASD+RGI ++R KVK FA+ S G Q+ CPP+K
Sbjct: 87 ALSRSLYGPALFHSRVLELNASDERGISIVRKKVKDFARMQLSRPPGGNYQEQYLCPPYK 146
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
I+ILDEADSMT AQ+ALRRTME +K TRFCL+CNYV+ II PL SRCSKFRFK + E
Sbjct: 147 IIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKRMGEG 206
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI-----VNE 254
TRL+ I E+E V + +E L++ S GD+R+AIT LQS ARL G G V E
Sbjct: 207 QAGTRLREIAEKEKVPMEEGVVEALIKHSEGDLRKAITFLQSAARLVGAAGADGGEEVEE 266
Query: 255 DVLEV---------------TGVIPNPWIEKLLKVD-------SFQVLEKYIEDLILEAY 292
D ++V GVIP+ I+ L+K +++ + K + +++ + +
Sbjct: 267 DAMDVDGVQKVVTVKSIEDIAGVIPDRTIDSLVKAMQPSSSGLTYENISKVVTEMVADGW 326
Query: 293 SATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
SA+Q+ Q + ++ S++D K I+ +E + RL DGA E++ ILD+
Sbjct: 327 SASQVVTQLYQTIIYNESIADIHKNKIVMIFSEIDKRLADGADEHLSILDMA 378
>gi|317027180|ref|XP_001400326.2| replication factor C subunit 2 [Aspergillus niger CBS 513.88]
Length = 389
Score = 301 bits (770), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 158/360 (43%), Positives = 224/360 (62%), Gaps = 33/360 (9%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
SK + + + + K PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPPGT
Sbjct: 20 SKPKPTDNKEEQAKQQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGT 79
Query: 78 GKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQD-- 131
GKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ ++G ++
Sbjct: 80 GKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGEEYL 139
Query: 132 -GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRCSK
Sbjct: 140 AQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSK 199
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG-- 248
FRFK L RL++I + E++ + ++ L+ S GDMRRAIT +QS A+L G
Sbjct: 200 FRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVGAGR 259
Query: 249 -----------------EGIVNEDVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYI 284
E I + E+ GV+P ++ L++ S++ + K +
Sbjct: 260 AGKKDEDEDEEMTDQESEVITVRTIEEIAGVVPESVLDALVQAMQPKKIGSSYEAVAKVV 319
Query: 285 EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
D+I + +SATQL Q + V+ ++ D QK I+ ++ + RL DGA E++ ILD+
Sbjct: 320 TDIIADGWSATQLLLQLYRRVVFNDAIPDIQKNKIVMVFSDMDRRLVDGADEHLSILDVA 379
>gi|240281117|gb|EER44620.1| DNA replication factor C subunit Rfc2 [Ajellomyces capsulatus H143]
gi|325092385|gb|EGC45695.1| activator 1 41 kDa subunit [Ajellomyces capsulatus H88]
Length = 394
Score = 301 bits (770), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 155/347 (44%), Positives = 218/347 (62%), Gaps = 37/347 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+DDV Q+ V+VL++ L ++LPH LFYGPPGTGKTST++A L+G
Sbjct: 36 PWVEKYRPKTLDDVASQEHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLYGP 95
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS------GFNQDGKPCPPFKIVILDEA 146
+YR RILELNASD+RGI ++R+K+K FA+ S ++ PCPPFKI+ILDEA
Sbjct: 96 QLYRSRILELNASDERGISIVREKIKDFARMQLSHPPLSDSAYREKYPCPPFKIIILDEA 155
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRCSKFRFK L + RL+
Sbjct: 156 DSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRCSKFRFKALDGSAAGCRLE 215
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG------------------ 248
I E + + TL+ S GD+RRAIT LQS ARL G
Sbjct: 216 EIARMEKLRLADGCIRTLIRCSEGDLRRAITYLQSAARLVGSTEGTKQGGKDESGDTEMA 275
Query: 249 ----EGIVN-EDVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQ 296
+GI+ + + E+ GV+P+ +++L+K S++ + + D++ + +SA+Q
Sbjct: 276 DAGEDGIITVKTIEEIAGVVPDDVVDRLIKALQPKKGRSSYEAVSHVVTDIVADGWSASQ 335
Query: 297 LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ Q + I++ S+ D K I+ +E + RL DGA E++ +LDL
Sbjct: 336 MLTQLYQIIVFDDSIPDIHKNSIVMVFSEFDKRLIDGADEHLTLLDL 382
>gi|258564276|ref|XP_002582883.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
gi|237908390|gb|EEP82791.1| activator 1 37 kDa subunit [Uncinocarpus reesii 1704]
Length = 395
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 164/364 (45%), Positives = 228/364 (62%), Gaps = 38/364 (10%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKY--RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
SK+ +T + +++ PWVEKY RPKT+DDV Q V+VL++ L ++LPH LFYGPP
Sbjct: 21 SKSKSTTGEEDKSRLQPWVEKYFSRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPP 80
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGK 133
GTGKTST++A LFG +YR RILELNASD+RGI ++RDKVK FA+ Q + QD +
Sbjct: 81 GTGKTSTILALSKSLFGPKLYRSRILELNASDERGINIVRDKVKNFARTQLSHPPPQDSE 140
Query: 134 -----PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
PCPPFKI+ILDEADSMT AQAALRRTME+ +K TRFCL+CNYV+ II PL SRC
Sbjct: 141 YRKQYPCPPFKIIILDEADSMTQDAQAALRRTMERFSKITRFCLVCNYVTRIIDPLASRC 200
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--- 245
SKFRFK L + RL+ I + E + D ++ L+ S GD+RRA+T +QS ARL
Sbjct: 201 SKFRFKTLDGSAAGGRLEEIVKAEKLRVDDGVIDALIRCSEGDLRRAVTYMQSAARLVGS 260
Query: 246 ---------KGGE---------GIVN-EDVLEVTGVIPNPWIEKLLKV-------DSFQV 279
+GG+ G++ ++V E+ GV+P+ + +L+ ++
Sbjct: 261 GLAGKSGKDEGGDEEMPDADSSGVITVQNVEEIAGVVPDNVVNRLIDAMQPKKGGSVYEG 320
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
+ K + D++ + +SA Q+ Q + + S+ D QK I+ +E + RL DGA E +
Sbjct: 321 VAKVVTDIVADGWSAGQILSQMYQATVFNESIPDIQKNDIVMIFSEFDKRLIDGADEQLS 380
Query: 340 ILDL 343
ILDL
Sbjct: 381 ILDL 384
>gi|164658640|ref|XP_001730445.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
gi|159104341|gb|EDP43231.1| hypothetical protein MGL_2241 [Malassezia globosa CBS 7966]
Length = 353
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 155/328 (47%), Positives = 208/328 (63%), Gaps = 26/328 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVE+YRPK+ID+V QQ V+VL+K L+ A+LPH LFYGPPGTGKTST++A QL+G
Sbjct: 8 PWVERYRPKSIDEVASQQHAVNVLRKALTSANLPHMLFYGPPGTGKTSTILALARQLYGP 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ R R+LELNASD+RGI V+RDK+K+FA+ S N D P PP+KIVILDEADSMT
Sbjct: 68 ELMRSRVLELNASDERGISVVRDKIKSFARAAVSAPNPD-YPSPPYKIVILDEADSMTQD 126
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR ME+ ++ TRFCL+CNYV+ II+P+ SRCSKFRF+PL + RL +I + E
Sbjct: 127 AQGALRRIMEQYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLDVASTEARLLHIAQME 186
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-----VLEVTGVIPNPW 267
+ + + L+ +S GDMRR+IT LQS ARL G D V E+ G +P
Sbjct: 187 GLRLNPDLVPVLIRSSEGDMRRSITYLQSIARLASARGGDVRDMSPTTVSELAGAVPTYV 246
Query: 268 IEKLLK---VDS----------------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSA 308
I+ L++ +DS F V+E+ + ++ E YS+ Q+ Q HD ++S
Sbjct: 247 IQSLVRAIGIDSDDINDELPPRATGSTDFDVIERAVRHVVREGYSSLQVVLQLHDYIISH 306
Query: 309 SSLSDKQKALILEKLAECNARLQDGASE 336
LS K+K L + L DG E
Sbjct: 307 PLLSAKRKTKCALHLGATDKSLMDGGEE 334
>gi|430814613|emb|CCJ28174.1| unnamed protein product [Pneumocystis jirovecii]
Length = 967
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 151/319 (47%), Positives = 209/319 (65%), Gaps = 21/319 (6%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+S K ++ + K K +PWVEKYRP+T+D V Q +SVLKK L +LPH LFYG P
Sbjct: 3 TSKKKQINLNNKDNEKMIPWVEKYRPQTLDQVAFQDHAISVLKKSLQSMNLPHLLFYGSP 62
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
GTGKTST++A ++LFG ++ + R+LELNASD+RGI +IR+KVK FA+ S N
Sbjct: 63 GTGKTSTILALANELFGMELMKSRVLELNASDERGISIIREKVKNFARIAVS--NSSEHS 120
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
CPP+KI+ILDEADSMT AQ+ALRRTME +K TRFCLICNY++ II PL SRCSKF+FK
Sbjct: 121 CPPYKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYITRIIGPLASRCSKFQFK 180
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE----- 249
PL+ + +L+YI E+V D +E L+E S GD+R+AIT LQS ARL E
Sbjct: 181 PLSFQHSMEKLKYIASCENVKYDKGVIEMLIEQSNGDLRKAITFLQSAARLVDSEPNKSS 240
Query: 250 -----GIVNEDVLEVTGVIPNPWIEKLLKV--------DSFQVLEKYIEDLILEAYSATQ 296
I E + E++G +P+ I+ LL + + ++++Y+ +++ E YSA Q
Sbjct: 241 LENTRSISVELISEISGTVPDHIIQHLLSICFSSKSTPSQYHLIDQYVSEIVAEGYSANQ 300
Query: 297 LFDQFHDIVMSASSLSDKQ 315
+ Q HD ++S +S +Q
Sbjct: 301 VISQLHDSIVSNELISAEQ 319
>gi|367015134|ref|XP_003682066.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
gi|359749728|emb|CCE92855.1| hypothetical protein TDEL_0F00440 [Torulaspora delbrueckii]
Length = 354
Score = 300 bits (769), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 153/338 (45%), Positives = 222/338 (65%), Gaps = 11/338 (3%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+ + V+ G++ + PWVEKYRPK +D+V Q V+VLKK L ++LPH LFYGPP
Sbjct: 7 SNKRRKVAPEGESESSK-PWVEKYRPKKLDEVAAQDHAVNVLKKTLGSSNLPHMLFYGPP 65
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQD 131
GTGKTST++A +LFG ++ + R+LELNASD+RGI ++R+KVK FA+ T S +++
Sbjct: 66 GTGKTSTILALTKELFGPELTKTRVLELNASDERGISIVREKVKNFARLTVSKPSAKDRE 125
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PCPP+KI+ILDEADSMT AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKF
Sbjct: 126 NHPCPPYKIIILDEADSMTADAQSALRRTMETYSSVTRFCLICNYVTRIIDPLASRCSKF 185
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG- 250
RFK L L RL+YI ++ESV + L+ +++ S GDMRRAIT LQS + KG EG
Sbjct: 186 RFKSLDAANALDRLKYIAKEESVDYEEGVLDDILKISSGDMRRAITLLQSAHKRKGLEGS 245
Query: 251 --IVNEDVLEVTGVIPNPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
I +++ E++G++PN I +L + + + +Y+ + +S + +Q H+
Sbjct: 246 KKITPQEIEEISGLVPNSTIHELAAKIAESNIDEIAEYVNTFMKSGWSVAAVTEQLHNYY 305
Query: 306 MSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ + K + L +++L +G +E+IQ+L+L
Sbjct: 306 LVSDDYGTDFKNKVSWILFNTDSKLTNGTNEHIQLLNL 343
>gi|350296832|gb|EGZ77809.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2509]
Length = 387
Score = 300 bits (769), Expect = 6e-79, Method: Compositional matrix adjust.
Identities = 160/370 (43%), Positives = 224/370 (60%), Gaps = 34/370 (9%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
K K A +S + K + PWVEKYRPKT+ DV Q ++VL++ L ++LPH
Sbjct: 8 KARKAAAASGTPNPEKQTKETPRAQPWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPH 67
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---T 124
LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 68 MLFYGPPGTGKTSTILALAKELYGPELIKARVLELNASDERGISIVREKVKDFARMQLTN 127
Query: 125 ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
S + PCPPFK++ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL
Sbjct: 128 PSAAYKARYPCPPFKLIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 187
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRCSKFRFK L + RL+ I + E V + A++ L++ S GD+R+AIT LQS AR
Sbjct: 188 ASRCSKFRFKSLDQGNAKKRLEEIAQLEGVGLEEGAIDALIKCSEGDLRKAITYLQSAAR 247
Query: 245 LKGGEGIVNED-----------------------VLEVTGVIPNPWIEKLLK-------V 274
L G +D V ++ GVIP+ I++LL+ V
Sbjct: 248 LVGAVAATAKDGEQKETEGDDEMEVDAKLVTVKVVEDIAGVIPDDTIQRLLEAMRPRAGV 307
Query: 275 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 334
D++ + K +E+++ + +SA Q Q + V+ + D QK I+ +E + RL DGA
Sbjct: 308 DTYPAVAKVVEEMVADGWSAGQTMTQLYQAVVFDEMIPDVQKNKIVMVFSEVDKRLVDGA 367
Query: 335 SEYIQILDLG 344
E++ +LDL
Sbjct: 368 DEHLSVLDLA 377
>gi|346979302|gb|EGY22754.1| replication factor C subunit 2 [Verticillium dahliae VdLs.17]
Length = 380
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 154/335 (45%), Positives = 214/335 (63%), Gaps = 25/335 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q V++L++ L ++LPH LFYGPPGTGKTST++A +L+G
Sbjct: 34 PWVEKYRPKTLSDVTAQDHTVTILQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGP 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ + + K PCPPFKI+ILDEADSM
Sbjct: 94 ELIKTRVLELNASDERGISIVREKVKNFARMQLTNPTAEYKKRYPCPPFKIIILDEADSM 153
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL+ I
Sbjct: 154 TQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKRRLEEIA 213
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-------------- 255
+ E V + A++ L++ S GD+R+AIT LQS ARL G + D
Sbjct: 214 KNEGVELEEGAVDALIKCSEGDLRKAITFLQSAARLVGATENADGDQSMDVDKKPITVKI 273
Query: 256 VLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA 308
+ ++ GVIP I KL D++Q + +E+++ + +SA Q+ Q + ++
Sbjct: 274 IEDIAGVIPESTINKLTTAIRPQKSGDTYQNVAGVVEEMVADGWSAGQVVSQLYQHIVYD 333
Query: 309 SSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
++ D QK I+ +E + RL DGA E++ ILDL
Sbjct: 334 EAIPDVQKNKIVLIFSEVDKRLVDGADEHLSILDL 368
>gi|119177342|ref|XP_001240460.1| hypothetical protein CIMG_07623 [Coccidioides immitis RS]
gi|303316031|ref|XP_003068020.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
gi|240107696|gb|EER25875.1| Activator 1 41 kDa subunit , putative [Coccidioides posadasii C735
delta SOWgp]
Length = 393
Score = 300 bits (768), Expect = 7e-79, Method: Compositional matrix adjust.
Identities = 159/363 (43%), Positives = 223/363 (61%), Gaps = 36/363 (9%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
SK+ + ++K PWVEKYRPKT+DDV Q V+VL++ L ++LPH LFYGPPGT
Sbjct: 21 SKSKSTADEADKSKLQPWVEKYRPKTLDDVAAQDHTVTVLQRTLQASNLPHMLFYGPPGT 80
Query: 78 GKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGK-- 133
GKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ Q + D +
Sbjct: 81 GKTSTILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQLSHPPAHDSEYR 140
Query: 134 ---PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRCSK
Sbjct: 141 KQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRIIDPLASRCSK 200
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG-- 248
FRFK L + TRL+ I + E + D ++ L+ S GD+RRAIT +QS ARL G
Sbjct: 201 FRFKSLDGSAAGTRLEEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQSAARLVGSGL 260
Query: 249 -------------------EGIVN-EDVLEVTGVIPNPWIEKLLKV-------DSFQVLE 281
G++ + V E+ GV+P+ + +L+ ++ +
Sbjct: 261 SGKSGKDESGDEVMTDADQSGVITVQTVEEIAGVVPDKVVNRLIDAMQPKKGGSVYEGVA 320
Query: 282 KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQIL 341
+ + D++ + +SA Q+ Q + ++ S+ D QK I+ +E + RL DGA E + IL
Sbjct: 321 RVVTDIVADGWSAGQMLSQMYQAIVFNESIPDIQKNDIVLVFSEYDKRLIDGADEQLSIL 380
Query: 342 DLG 344
DL
Sbjct: 381 DLA 383
>gi|336464731|gb|EGO52971.1| activator 1 41 kDa subunit [Neurospora tetrasperma FGSC 2508]
Length = 387
Score = 300 bits (768), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 155/345 (44%), Positives = 216/345 (62%), Gaps = 34/345 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q ++VL++ L ++LPH LFYGPPGTGKTST++A +L+G
Sbjct: 33 PWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGP 92
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFNQDGKPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ S + PCPPFK++ILDEADSM
Sbjct: 93 ELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKLIILDEADSM 152
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL+ I
Sbjct: 153 TQDAQSALRRTMEMYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLEEIA 212
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-------------- 255
+ E V + A++ L++ S GD+R+AIT LQS ARL G +D
Sbjct: 213 QLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLVGAVAATGKDGEQKETEGDDEMEV 272
Query: 256 ---------VLEVTGVIPNPWIEKLLK-------VDSFQVLEKYIEDLILEAYSATQLFD 299
V ++ GVIP+ I++LL+ VD++ + K +E+++ + +SA Q
Sbjct: 273 DAKLVTVKVVEDIAGVIPDDTIQRLLEAMRPRAGVDTYPAVAKVVEEMVADGWSAGQTMT 332
Query: 300 QFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
Q + V+ + D QK I+ +E + RL DGA E++ +LDL
Sbjct: 333 QLYQAVVFDEMIPDVQKNKIVMVFSEVDKRLVDGADEHLSVLDLA 377
>gi|85118512|ref|XP_965460.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
gi|28927269|gb|EAA36224.1| activator 1 41 kDa subunit [Neurospora crassa OR74A]
Length = 387
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 155/345 (44%), Positives = 216/345 (62%), Gaps = 34/345 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q ++VL++ L ++LPH LFYGPPGTGKTST++A +L+G
Sbjct: 33 PWVEKYRPKTLSDVTAQDHTITVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKELYGP 92
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFNQDGKPCPPFKIVILDEADSM 149
++ + R+LELNASD+RGI ++R+KVK FA+ S + PCPPFK++ILDEADSM
Sbjct: 93 ELIKSRVLELNASDERGISIVREKVKDFARMQLTNPSAAYKARYPCPPFKLIILDEADSM 152
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + RL+ I
Sbjct: 153 TQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQGNAKKRLEEIA 212
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-------------- 255
+ E V + A++ L++ S GD+R+AIT LQS ARL G +D
Sbjct: 213 QLEGVGLEEGAVDALIKCSEGDLRKAITYLQSAARLVGAVAATAKDGEQKETEGDDEMEV 272
Query: 256 ---------VLEVTGVIPNPWIEKLLK-------VDSFQVLEKYIEDLILEAYSATQLFD 299
V ++ GVIP+ I++LL+ VD++ + K +E+++ + +SA Q
Sbjct: 273 DAKLVTVKVVEDIAGVIPDDTIQRLLEAMRPRAGVDTYPAVAKVVEEMVADGWSAGQTMT 332
Query: 300 QFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
Q + V+ + D QK I+ +E + RL DGA E++ +LDL
Sbjct: 333 QLYQAVVFDEMIPDVQKNKIVMVFSEVDKRLVDGADEHLSVLDLA 377
>gi|425778430|gb|EKV16557.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum PHI26]
Length = 780
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/346 (45%), Positives = 214/346 (61%), Gaps = 36/346 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPPGTGKTST++A LFG
Sbjct: 424 PWVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 483
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQDGK---PCPPFKIVILDEA 146
+YR RILELNASD+RGI ++RDKVK FA+ S G + + PCPPFKI+ILDEA
Sbjct: 484 ALYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEA 543
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME ++ TRFCL+CNYV+ II+PL SRCSKFRFK L N R+
Sbjct: 544 DSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRIS 603
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG------GEGIVNEDVL--- 257
I QE + + ++TL+ GD+RRAIT LQS ARL G G+ ++ V+
Sbjct: 604 NIAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQSAARLVGATKPPTGKDADDDAVMTDA 663
Query: 258 -------------EVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQL 297
E+ GV+P ++ L++ ++ + I DL+ + +SATQL
Sbjct: 664 GSNSSVITVRTIEEIAGVLPEEILDSLVEAMQPKSGGSVYEAISGVITDLVADGWSATQL 723
Query: 298 FDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
Q + V+ ++ D QK I+ +E + RL DG+ E++ +LDL
Sbjct: 724 VGQLYRRVVFNEAIPDIQKNKIVMLFSEMDKRLVDGSDEHLSMLDL 769
>gi|226292668|gb|EEH48088.1| replication factor C subunit 2 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 161/367 (43%), Positives = 224/367 (61%), Gaps = 40/367 (10%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S K S + TR +P WVEKYRPKT+DDV Q+ ++VL++ L ++LPH LFYGPP
Sbjct: 20 SKPKASEKEADNTRLQP--WVEKYRPKTLDDVASQEHTITVLQRTLQASNLPHMLFYGPP 77
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ---- 130
GTGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ S
Sbjct: 78 GTGKTSTILALSKSLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTA 137
Query: 131 --DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
+ PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRC
Sbjct: 138 YCEKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRC 197
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--- 245
SKFRFK L + +RL+ I E + +ETL+ S GD+RRAIT +QS ARL
Sbjct: 198 SKFRFKALDGSAAGSRLEEIARVEKLRLADGCIETLIRCSEGDLRRAITFMQSAARLVGS 257
Query: 246 --------------------KGGEGIVN-EDVLEVTGVIPNPWIEKLLKVDS-------F 277
G EG++ + E+ GV+P+ + +L+K +
Sbjct: 258 GLVSKPPPGKDEGGDEDMADAGDEGVITVRTIEEIAGVVPDDIVNRLVKALQPKKARLPY 317
Query: 278 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 337
+ + K + D++ + +SA+Q+ Q + I++ S+ D K I+ +E + RL DGA E+
Sbjct: 318 EEVSKVVTDIVADGWSASQMLTQLYQIIVFDDSIEDIHKNSIVMVFSEFDKRLIDGADEH 377
Query: 338 IQILDLG 344
+ ILDL
Sbjct: 378 LTILDLA 384
>gi|425784288|gb|EKV22076.1| Protein transport membrane glycoprotein Sec20, putative
[Penicillium digitatum Pd1]
Length = 780
Score = 299 bits (766), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 159/346 (45%), Positives = 214/346 (61%), Gaps = 36/346 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPPGTGKTST++A LFG
Sbjct: 424 PWVEKYRPKTLDDVAAQDHTTKVLRRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 483
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQDGK---PCPPFKIVILDEA 146
+YR RILELNASD+RGI ++RDKVK FA+ S G + + PCPPFKI+ILDEA
Sbjct: 484 ALYRSRILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEA 543
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME ++ TRFCL+CNYV+ II+PL SRCSKFRFK L N R+
Sbjct: 544 DSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNNAAGDRIS 603
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG------GEGIVNEDVL--- 257
I QE + + ++TL+ GD+RRAIT LQS ARL G G+ ++ V+
Sbjct: 604 NIAAQEGLRLEDGVVDTLIRCGEGDLRRAITYLQSAARLVGATKPPTGKDADDDAVMTDA 663
Query: 258 -------------EVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQL 297
E+ GV+P ++ L++ ++ + I DL+ + +SATQL
Sbjct: 664 GSNSSVITVRTIEEIAGVLPEEILDSLVEAMQPKSGGSVYEAISGVITDLVADGWSATQL 723
Query: 298 FDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
Q + V+ ++ D QK I+ +E + RL DG+ E++ +LDL
Sbjct: 724 VGQLYRRVVFNEAIPDIQKNKIVMLFSEMDKRLVDGSDEHLSMLDL 769
>gi|448102295|ref|XP_004199768.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359381190|emb|CCE81649.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 157/347 (45%), Positives = 219/347 (63%), Gaps = 26/347 (7%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + PWVEKYRPK +D+V Q+ V +LKK L A+LPH LFYGPPGTGKTST++A
Sbjct: 14 RIEHTPWVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALAR 73
Query: 89 QLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDGKPCPPFKIVILD 144
QL+G +++ R+LELNASDDRGI ++R KVK FA+ AS + + PCPP+K++ILD
Sbjct: 74 QLYGPRLFKSRVLELNASDDRGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILD 133
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT+ AQ+ALRRT+E + TRFCLICNY++ II PL+SRCSKFRF L + L R
Sbjct: 134 EADSMTNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNDNALQR 193
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL-----------------KG 247
++YI E+E++ D ETL+ S GD+R+AIT LQS +RL +G
Sbjct: 194 IRYIVEKENLNVDEDVPETLLSMSNGDLRKAITFLQSASRLSFALANPDDNEDRMHVDEG 253
Query: 248 GEGIVNEDVLEVTGVIPNPWIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHD 303
I V E+ G+IP+ +++L+ K ++ ++ +++ IL +SA Q+ DQ HD
Sbjct: 254 NGKITKPAVQEIAGIIPDDVLKRLVTTIEKGNTREIFNT-VQEFILGGWSAQQVLDQLHD 312
Query: 304 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
+ SL + K I L + +L G E+IQ+L+ V KA
Sbjct: 313 SYVMNHSLKPELKNKIALILFSSDCKLNSGTDEHIQLLNFCLQVAKA 359
>gi|410079477|ref|XP_003957319.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
gi|372463905|emb|CCF58184.1| hypothetical protein KAFR_0E00300 [Kazachstania africana CBS 2517]
Length = 350
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 155/339 (45%), Positives = 219/339 (64%), Gaps = 13/339 (3%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
++ K + T G+ PWVEKYRPK +++V Q V+VLKK L A+LPH LFYGPP
Sbjct: 7 NAKKRRIDTEGENEQSK-PWVEKYRPKKLEEVTAQDHAVTVLKKTLESANLPHMLFYGPP 65
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG-- 132
GTGKTST++A +LFG ++ + R+LELNASD+RGI ++R+KVK FA+ T S +++
Sbjct: 66 GTGKTSTILALTKELFGPELAKTRVLELNASDERGISIVREKVKNFARLTVSKSSKEDLE 125
Query: 133 -KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PCPP+KI+ILDEADSMT AQ+ALRRTME + TRFCLICNY++ II PL SRCSKF
Sbjct: 126 KYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKF 185
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKG 247
RFK L L RL+YI E+ESV + LE ++E S GD+RRAIT LQS ++ LK
Sbjct: 186 RFKSLEATNALDRLKYISEKESVQYEEGTLEKILEISQGDLRRAITLLQSASKRISYLK- 244
Query: 248 GEGIVNEDVLEVTGVIPNPWIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
E I V E+ GV+P + ++ + +++ Y++ I+ +S + +Q HD
Sbjct: 245 VEKIRILQVEELAGVVPTKILHEIAEKVATKDIKIIADYVDTFIISGWSGVSVLNQLHDY 304
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
++ K + L + +A+L +G +E+IQ+L+L
Sbjct: 305 YITNDDYDTDFKNKVSWILFDTDAKLTNGTNEHIQLLNL 343
>gi|406695817|gb|EKC99116.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 8904]
Length = 389
Score = 298 bits (762), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 155/359 (43%), Positives = 219/359 (61%), Gaps = 50/359 (13%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q V+VL+K L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 19 PWVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQLFGP 78
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTA---SGFNQDGK--PCPPFKIVILDEAD 147
D+++ R+LELNASD+RGI V+R+K+KTFA++T G DGK PCPP+K++ILDEAD
Sbjct: 79 DLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKEYPCPPYKLIILDEAD 138
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ+ALRR ME ++ TRFCL+CNYV+ II+P+ SRCSKFRF+PL +++ R++
Sbjct: 139 SMTQDAQSALRRIMETYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLEQSSSQARMEM 198
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK-------------GGEGIVNE 254
I E E V D LE +++ +GGD+R+AIT LQ+ RL G E
Sbjct: 199 IAENEGVQADPGVLELILQLAGGDLRKAITYLQTAQRLHQASDPPTPITAMSGKSSSAPE 258
Query: 255 -----------------DVLEVTGVIPNPWIEKLLK--------------VDSFQVLEKY 283
V E++GV+P+ I+ LL+ + F+ + K
Sbjct: 259 LPTAFFPLSYLKPSELTAVHEISGVVPSSVIDNLLRSMGIEPGSGLNPTLANGFEGVRKA 318
Query: 284 IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
+ + E +S Q+ +Q HD ++ +++ K+ +AEC+ L +G E +Q+L+
Sbjct: 319 VRSVGREGWSTGQVLEQVHDALIPLAAIPTIAKSNAALAIAECDKALCEGGDEELQLLE 377
>gi|448537421|ref|XP_003871334.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380355691|emb|CCG25209.1| Rfc2 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 355
Score = 298 bits (762), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 158/336 (47%), Positives = 217/336 (64%), Gaps = 29/336 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK ++D+ Q+ V VL+K +S +LPH LFYGPPGTGKTST++A QL+G
Sbjct: 15 PWVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 74
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN-QDGK--PCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI ++R K+K FA+ T S +D K PCPP+KI+ILDEADSM
Sbjct: 75 NLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTPEDLKNYPCPPYKIIILDEADSM 134
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME TRF L+CNY++ II PL SRCSKFRFK L L RL+YI
Sbjct: 135 TNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYIA 194
Query: 210 EQESVMCDFK-----ALETLVETSGGDMRRAITCLQSCARLK----------GGEGIVN- 253
+E + D L +++ S GD+R+AIT LQS ++L G G++
Sbjct: 195 NEEQLNLDKSQGEDGVLNEVLKISNGDLRKAITYLQSASKLSTSLQLEDDQDGNAGLITK 254
Query: 254 EDVLEVTGVIPNPWIEKLLKVDSFQVLEKYI---EDLILEAYSATQLFDQFHDIVM---S 307
+ + E GV+P+ I+ L+K + EK I D+IL +SA QL DQ H++++ S
Sbjct: 255 QSIRETAGVLPDELIDSLIKTIRSKNEEKLISLVNDIILSGWSAQQLIDQLHEVLVIDDS 314
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+SL Q ALI L + + +L G E+IQ+L+L
Sbjct: 315 INSLVKNQIALI---LFDTDKKLNFGTDEHIQLLNL 347
>gi|327292807|ref|XP_003231101.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
118892]
gi|326466731|gb|EGD92184.1| DNA replication factor C subunit Rfc2 [Trichophyton rubrum CBS
118892]
Length = 386
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 155/354 (43%), Positives = 221/354 (62%), Gaps = 32/354 (9%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
V+ + ++ + PWVEKYRPKT+DDV Q +S+L++ L+ ++LPH LFYG PGTGKTS
Sbjct: 22 VTNNQESDQQAQPWVEKYRPKTLDDVTAQDHTISILQRNLNASNLPHMLFYGSPGTGKTS 81
Query: 82 TMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFA-----QQTASGFNQDGKPC 135
T++A LFG + R R+LELNASD+RGI ++R+K+K FA Q A + PC
Sbjct: 82 TILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPADPVYRSQYPC 141
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
PPFKI+ILDEADSMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II P+ SRCSKFRFK
Sbjct: 142 PPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKV 201
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL-KGGEG---- 250
L + +RL I E + + +ETL+ S GD+R+AIT +QS ARL + G G
Sbjct: 202 LDGSAAQSRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGSGKKKD 261
Query: 251 --------------IVNEDVLEVTGVIPNPWIEKLL-------KVDSFQVLEKYIEDLIL 289
I + EV+G++P +E+++ + ++ + + DL+
Sbjct: 262 SSDKEMELDDVKPRITVRSIEEVSGLVPETVMERVVAALRPSKRTSKYEEISSLVADLVA 321
Query: 290 EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +SA+Q+ Q + V+ S+SD QK IL+ +E + RL DGA E++ LD
Sbjct: 322 DGWSASQVLSQTYQAVLQDESISDAQKNQILKVCSEFDKRLVDGADEHLSTLDF 375
>gi|443896109|dbj|GAC73453.1| replication factor C, subunit RFC4 [Pseudozyma antarctica T-34]
Length = 383
Score = 297 bits (760), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 158/332 (47%), Positives = 209/332 (62%), Gaps = 30/332 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTID+V Q+ V+VLKK L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 30 PWVEKYRPKTIDEVTAQEHTVAVLKKTLMSNNLPHMLFYGPPGTGKTSTILALARQLFGP 89
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+K+K FA+ + ++G PCPPFKI+ILDEADSMT
Sbjct: 90 ELMKTRVLELNASDERGITVVREKIKNFAKLAVTN-PKEGFPCPPFKIIILDEADSMTQD 148
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR ME+ ++ TRFCL+CNYV+ II+PL SRCSKFRF+ L ++ RL+ I E
Sbjct: 149 AQSALRRIMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFRSLDTSSTKARLEMIANTE 208
Query: 213 SVMC-DFKALETLVETSGGDMRRAITCLQSCARLKGGEG-----IVNEDVLEVTGVIPNP 266
+V D + L+TL+ TS GD+RRAIT LQS +RL G + + ++E+ GV+P+
Sbjct: 209 AVTFEDGEVLDTLIGTSDGDLRRAITYLQSASRLHSVAGDDKSAVTSASIVEIAGVVPSR 268
Query: 267 WIEKLL----------------------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
I L K D+F + + + E YS TQL Q HD
Sbjct: 269 VISSLADAVGIEAYAGSDGDVDMDAGAKKRDAFDHIRHEVRVITREGYSITQLLVQLHDY 328
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASE 336
V+ +L KA +AE + L DGA E
Sbjct: 329 VIGHPTLLAMIKAKAALLMAEMDKCLTDGADE 360
>gi|406866228|gb|EKD19268.1| activator 1 41 kDa subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 385
Score = 296 bits (759), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 157/368 (42%), Positives = 223/368 (60%), Gaps = 32/368 (8%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
K K+A +++ S K + PWVEKYRPK ++DV Q ++VL++ L ++LPH
Sbjct: 8 KARKEAAATNGASAKAPTKENTRLQPWVEKYRPKNLNDVTAQDHTITVLQRTLQSSNLPH 67
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+ S
Sbjct: 68 MLFYGPPGTGKTSTVLALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARMQLSN 127
Query: 128 FNQDGK---PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
+ + PCPP+KI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL
Sbjct: 128 PSPAYRALYPCPPYKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 187
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRCSKFRFK L R++ I E+E V + A ETL+ S GD+R+AIT LQS AR
Sbjct: 188 ASRCSKFRFKSLDVGNAKRRVEEIAEKEGVSLEDGAAETLIRCSEGDLRKAITFLQSAAR 247
Query: 245 LKGG---------------------EGIVNEDVLEVTGVIPNPWIEKLL-------KVDS 276
L G + + + V ++ GVIP+ I +L+ K
Sbjct: 248 LVGAVALRDDKEDKDEDSMDVDREKKAVTVKSVEDIAGVIPDATISRLVTAMQPKSKGLV 307
Query: 277 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 336
++ + K + D++ + +SATQ+ Q ++ + D QK I +E + RL DG+ E
Sbjct: 308 YEAVSKVVTDMVADGWSATQVVTQLFQAIIYNETTPDIQKNKITLVFSEADKRLVDGSDE 367
Query: 337 YIQILDLG 344
++ +LDL
Sbjct: 368 HLIVLDLA 375
>gi|389631703|ref|XP_003713504.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
gi|351645837|gb|EHA53697.1| replication factor C subunit 2 [Magnaporthe oryzae 70-15]
Length = 384
Score = 296 bits (758), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 158/338 (46%), Positives = 219/338 (64%), Gaps = 29/338 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+ DV Q V+VL++ L ++LPH LFYGPPGTGKTST++A +LFG
Sbjct: 35 PWVEKYRPKTLSDVTAQDHTVTVLQRTLQASNLPHMLFYGPPGTGKTSTVLALAKELFGP 94
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS----GFNQDGKPCPPFKIVILDEADS 148
++ + R+LELNASD+RGI ++R+KVK FA+ + G+ + PCPPFKI+ILDEADS
Sbjct: 95 ELMKSRVLELNASDERGISIVREKVKDFARMQLTNPPPGY-KSKYPCPPFKIIILDEADS 153
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L + +RL+ I
Sbjct: 154 MTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDQENARSRLEDI 213
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL---KGGEGIVNEDVLEV------ 259
+E V + A++ L++ S GD+R+AIT LQS ARL G G ED ++V
Sbjct: 214 AAKEGVALEDGAVDALIKCSEGDLRKAITFLQSAARLVGAVGAAGAGQEDKMDVDSRPVT 273
Query: 260 -------TGVIPNPWIEKLLKVD-------SFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
GVIP I+ L++ ++Q + K +ED++ + +SATQ+ Q + +
Sbjct: 274 VRIIEDIAGVIPGKTIDALVEAIRPRGAALTYQAVSKVVEDMVADGWSATQVVGQLYQAI 333
Query: 306 MSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ + + QK I+ +E + RL DG+ E++ ILDL
Sbjct: 334 VYDEGIPNIQKNEIVMVFSEVDKRLVDGSDEHLSILDL 371
>gi|398402105|ref|XP_003853207.1| replication factor C subunit 2 [Zymoseptoria tritici IPO323]
gi|339473089|gb|EGP88183.1| hypothetical protein MYCGRDRAFT_100072 [Zymoseptoria tritici
IPO323]
Length = 408
Score = 296 bits (758), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 162/370 (43%), Positives = 222/370 (60%), Gaps = 58/370 (15%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N+ PWVEKYRPK++DDV Q V+VL++ L A+LPH LFYGPPGTGKTST++A Q
Sbjct: 29 NRQQPWVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQ 88
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP----------CPPF 138
L+G ++ + R+LELNASD+RGI ++R+KVK FA+ S N P CPP+
Sbjct: 89 LYGPELIKTRVLELNASDERGISIVREKVKNFARMQLS--NPPSGPAGEEYRKKYSCPPY 146
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
KI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L E
Sbjct: 147 KIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDE 206
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG---------- 248
R++ I E+V + +ETL+ S GD+R+AIT LQS ARL G
Sbjct: 207 GNAGKRIEDIARLEAVTLEDGVVETLLRCSEGDLRKAITFLQSAARLVGAIQGPPTTTKR 266
Query: 249 --EGIVNED-----------------------VLEVTGVIPNPWIEKLL---------KV 274
+ V +D + E+ GVIP+P I++L+ +
Sbjct: 267 KRKTAVEDDEEDGDAMDIDTSSTTSPPITVAIISEIAGVIPDPTIDRLVASLTPKSSSQP 326
Query: 275 DSFQVLEKYIEDLILEAYSATQLFDQFHD-IVMSASSLSDKQKALILEKLAECNARLQDG 333
+ + + +EDL+ E +SA Q+ Q +D IV+ ++ D+ K I+ +E + RL DG
Sbjct: 327 APYAPIAQAVEDLVAEGWSAGQIVSQLYDKIVIWNETVGDRAKGKIMAVFSEADKRLVDG 386
Query: 334 ASEYIQILDL 343
+ E++ +LDL
Sbjct: 387 SDEHLTVLDL 396
>gi|259486085|tpe|CBF83646.1| TPA: subunit of heteropentameric Replication factor C (RF-C)
(Eurofung) [Aspergillus nidulans FGSC A4]
Length = 387
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 154/343 (44%), Positives = 215/343 (62%), Gaps = 32/343 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPPGTGKTST++A LFG
Sbjct: 35 PWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGP 94
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGK-----PCPPFKIVILDEA 146
+YR RILELNASD+RGI ++R+KVK FA+ Q + D + PCPPFKI+ILDEA
Sbjct: 95 ALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDEA 154
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRCSKFRFKPL + RL
Sbjct: 155 DSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRLA 214
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL------------------KGG 248
I + E + + ++ L+ S GD+RRAIT LQS ARL +G
Sbjct: 215 QIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARLVGAAKAAKDGDEDEEMKDQGS 274
Query: 249 EGIVNEDVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQF 301
+ I + E+ GV+P ++ L++ ++ + K + +++ + +SATQ+ Q
Sbjct: 275 DMITVSTIEEIAGVVPESVLDGLIQSLQPKRMGSPYEAVSKVVTEIVADGWSATQILLQL 334
Query: 302 HDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
+ ++ ++ D QK I+ +E + RL DGA E++ ILD+
Sbjct: 335 YRRMVYNDAIPDIQKNKIVLVFSEMDKRLVDGADEHLSILDVA 377
>gi|145477489|ref|XP_001424767.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124391833|emb|CAK57369.1| unnamed protein product [Paramecium tetraurelia]
Length = 351
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 151/319 (47%), Positives = 217/319 (68%), Gaps = 8/319 (2%)
Query: 31 KP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
KP +PWVEKYRP I+D+ Q+EVV L+ L +LPH L +GPPGTGKTST+IA Q
Sbjct: 24 KPMLPWVEKYRPNKIEDLAYQEEVVQSLQGVLKTGNLPHLLLHGPPGTGKTSTIIALAKQ 83
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
LFG D +R+R+LELNASDDRGI V+R+KVK FA+Q + G CP +KI+ILDEADS
Sbjct: 84 LFGPDFWRQRVLELNASDDRGINVVRNKVKKFAEQIVAKNPNPGFLCPSYKIIILDEADS 143
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+ AQ+ALRR +E +TRFC+ICNY++ II+PL SRC K+RFK + EN + RL+++
Sbjct: 144 MTNDAQSALRRIIEDYATTTRFCIICNYITKIIEPLVSRCVKYRFKSIPENEQIERLKFV 203
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPNPW 267
+ ESV + AL+ LV SGGD+R+++ LQS + L E +N+ + E++G IP+
Sbjct: 204 ADSESVTYNLDALKQLVVVSGGDLRKSVNMLQSSSTLY--EKSINKKAINEISGFIPDEQ 261
Query: 268 IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
IE L+ V S + +++ +I + Y+ QL QF D+V++ ++ +KQKA ++E A
Sbjct: 262 IEDLVSVIQTKSIRSVQEECTRVIQQGYNIEQLILQFLDVVLATDTIKEKQKAKMMEIAA 321
Query: 325 ECNARLQDGASEYIQILDL 343
L +G++E +QI +L
Sbjct: 322 YTEKCLIEGSAEDLQIFNL 340
>gi|320588439|gb|EFX00908.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 395
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 164/389 (42%), Positives = 231/389 (59%), Gaps = 48/389 (12%)
Query: 1 MEAF--LRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLK 58
M +F L+ KL ++SK T+ +R +P WVEKYRPKT+ DV Q V+VL+
Sbjct: 1 MASFFDLKARKLAAANGTASKNDKQTNETSRAQP--WVEKYRPKTLSDVTAQDHTVTVLQ 58
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKV 117
+ L ++LPH LFYGPPGTGKTST++A +L+G + + R+LELNASD+RGI ++R+KV
Sbjct: 59 RTLQASNLPHMLFYGPPGTGKTSTILALAKELYGPEFVKSRVLELNASDERGISIVREKV 118
Query: 118 KTFAQQTAS----GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
K FA+ + G+ +D PCPPFK+++LDEADSMT AQ+ALRRTME +K TRFCLI
Sbjct: 119 KDFARMQLTNPPPGY-RDRYPCPPFKLIVLDEADSMTQDAQSALRRTMETYSKITRFCLI 177
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
CNYV+ II PL SRCSKFRFK L + R++ I +E V A++ L+ S GD+R
Sbjct: 178 CNYVTRIIDPLASRCSKFRFKSLDQGNARARVEDIATREHVSLAPGAVDALIRCSEGDLR 237
Query: 234 RAITCLQSCARLKGGE------------------------------GIVNEDVLEVTGVI 263
+AIT LQS ARL G E I + V E+ GVI
Sbjct: 238 KAITFLQSAARLVGQEEEDKKEQKEQKEQKDQDKEEDSMDVDDSRPAITVQIVEEIAGVI 297
Query: 264 PNPWIEKLLKV--------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 315
P+ I +L++ ++ + +ED++ + +SA Q+ Q + V+ ++ D Q
Sbjct: 298 PDDVISQLVQAIRPAAKGGSTYAAIASVVEDMVADGWSAGQVVTQLYQTVVYDETVPDAQ 357
Query: 316 KALILEKLAECNARLQDGASEYIQILDLG 344
K I+ +E + RL DGA E++ ILDL
Sbjct: 358 KNKIVLVFSEVDKRLVDGADEHLSILDLA 386
>gi|255088619|ref|XP_002506232.1| predicted protein [Micromonas sp. RCC299]
gi|226521503|gb|ACO67490.1| predicted protein [Micromonas sp. RCC299]
Length = 329
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 150/323 (46%), Positives = 205/323 (63%), Gaps = 5/323 (1%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP+ I+DV Q+EVV L+K L A++PH LFYGPPGTGKT+ +A C QL+G
Sbjct: 7 PWVEKYRPRNINDVAHQEEVVRTLEKALETANMPHMLFYGPPGTGKTTCALAICRQLYGP 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+R+K+K FA TA G G P PP+KI+ILDEADSMT+
Sbjct: 67 ELIKSRVLELNASDERGISVVRNKIKGFAS-TAVGQGAPGYPSPPYKILILDEADSMTND 125
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTME +K TRF ++CNY+S II+P+ SRC+KFRFKPL M RL++I E
Sbjct: 126 AQSALRRTMETYSKVTRFFILCNYISRIIEPIASRCAKFRFKPLGHEVMGDRLKFIATAE 185
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK-- 270
+ E SGGDMR+AIT LQS ARL G I +++ V G + + +
Sbjct: 186 GLTLGEGCYEACSTHSGGDMRKAITLLQSAARLFGTATITGKEITAVAGAVDEDQVAQVV 245
Query: 271 -LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
L K + + IE ++ + + Q+ QF + V+ +SD K I ++AE +
Sbjct: 246 ALCKTNQVDGANRIIESILKDGFPGLQIITQFAERVVDDEGVSDAVKGKICARIAEADKA 305
Query: 330 LQDGASEYIQILDLGSIVIKANK 352
L DGA E +Q++ + S A K
Sbjct: 306 LVDGADESLQLMAIVSTACVAMK 328
>gi|323304258|gb|EGA58032.1| Rfc2p [Saccharomyces cerevisiae FostersB]
Length = 348
Score = 295 bits (754), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 148/289 (51%), Positives = 198/289 (68%), Gaps = 11/289 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPN 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKRAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 311
IE + KV S F ++KY+ + +SA + +Q H+ ++ +
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNF 314
>gi|452979410|gb|EME79172.1| hypothetical protein MYCFIDRAFT_79709 [Pseudocercospora fijiensis
CIRAD86]
Length = 405
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 163/365 (44%), Positives = 217/365 (59%), Gaps = 51/365 (13%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
NK PWVEKYRPK++DDV Q V+VL++ L A+LPH LFYGPPGTGKTST++A Q
Sbjct: 31 NKLQPWVEKYRPKSLDDVAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQ 90
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS-------GFNQDGK-PCPPFKI 140
L+G ++ + R+LELNASD+RGI ++R+KVK FA+ S G K PCPP+KI
Sbjct: 91 LYGPELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPYKI 150
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
++LDEADSMT AQ+ALRRTME +K TRFCL+CNYV+ II PL SRCSKFRFK L E
Sbjct: 151 IVLDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKLLDEGN 210
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG------------ 248
R++ I E+V + TL+ S GD+R+AIT LQS ARL G
Sbjct: 211 AGRRIEDIARLENVTLEEGVTNTLLRCSDGDLRKAITFLQSAARLVGAVQASTQPDKKRK 270
Query: 249 ---------------------EGIVNEDVLEVTGVIPNPWIEKLLKVDS--------FQV 279
I + + E+ GVIPN IE+L + +
Sbjct: 271 RTKVEEDDDDADAMDIDAAPSPPITVQSIEEIAGVIPNNTIERLTTAMTPKPKSRAPYGP 330
Query: 280 LEKYIEDLILEAYSATQLFDQFHD-IVMSASSLSDKQKALILEKLAECNARLQDGASEYI 338
+ + +EDL+ E +SATQ+ Q +D IV+ ++ D K I+ +E + RL DG+ E++
Sbjct: 331 IAQAVEDLVAEGWSATQIVSQLYDKIVLGDETVGDGAKNKIMLTFSETDKRLVDGSDEHL 390
Query: 339 QILDL 343
ILDL
Sbjct: 391 TILDL 395
>gi|428170599|gb|EKX39523.1| replication factor C, subunit RFC4 [Guillardia theta CCMP2712]
Length = 324
Score = 294 bits (753), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 151/328 (46%), Positives = 212/328 (64%), Gaps = 11/328 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVE++RP +I V Q+ VV+ L + +LPH LFYGPPGTGKTST++A L+G
Sbjct: 2 VPWVEQHRPSSIAQVAHQRHVVATLSSAVESGNLPHLLFYGPPGTGKTSTILALAKDLYG 61
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASD+RGI V+R+K+K FA S PCPPFK+VILDEAD MT
Sbjct: 62 PELYKSRVLELNASDERGIDVVRNKIKHFASLAVSSSKSSSYPCPPFKLVILDEADCMTT 121
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRRTME T+ TRFC+ICNYVS II P+ SRC+KFRF+P++ ML RL I ++
Sbjct: 122 DAQSALRRTMETCTRVTRFCIICNYVSRIISPIASRCAKFRFQPVSTEVMLERLNMIADK 181
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + LV SGGD+RRAIT +Q+ L G + +D++E IP+ I L
Sbjct: 182 EGFQLPSDVTDALVNISGGDLRRAITMMQNTYILH-GNSMKGQDIIENAATIPDSVILDL 240
Query: 272 L---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--ASSLSDKQKALILEKLAEC 326
+ K +SF+ ++ + D+I + Y A +Q HD VMS A +S K K++I + L
Sbjct: 241 VNSCKYNSFEKIQSKVNDIIADGYPA----NQIHDWVMSKEAFGISAKSKSIICKALGTT 296
Query: 327 NARLQDGASEYIQILDLGSIVIKANKTA 354
+ RL DG+ + +L L S++++A +T+
Sbjct: 297 DMRLTDGSDVTLSLLHLVSVIMQALQTS 324
>gi|401425841|ref|XP_003877405.1| putative replication factor C, subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322493650|emb|CBZ28940.1| putative replication factor C, subunit 2 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 354
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 154/349 (44%), Positives = 217/349 (62%), Gaps = 14/349 (4%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYG 73
P+ + + T PWVEKYRP+T+ +V Q E V L+ CL GA++PHFLF+G
Sbjct: 7 PAQKRAKTEGASDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHG 66
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-- 130
PPGTGKT++++A H+LFG D R R+ ELNASDDRGI V+R+KVK FAQ S
Sbjct: 67 PPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSV 126
Query: 131 ---DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
DGK P PPFK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+
Sbjct: 127 TQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIA 186
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
SRC+K+RFKPL ++ + R++Y+ + E + +L L SGGD+R AI LQS +
Sbjct: 187 SRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKA 246
Query: 246 KGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIE---DLILEAYSATQLFDQF- 301
K G+ + ED + V+G +P +++ L LE+ I+ L+ E ++A Q+ Q
Sbjct: 247 K-GDDLSKEDFVSVSGSVPADVMQRYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQIQ 305
Query: 302 HDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
H +V + L+ Q+ I+ KL + RL DG +Y+Q+LD+GS V A
Sbjct: 306 HYLVSAGCPLNSAQRGKIMLKLCQTERRLADGGDDYLQLLDIGSAVCSA 354
>gi|255712103|ref|XP_002552334.1| KLTH0C02442p [Lachancea thermotolerans]
gi|238933713|emb|CAR21896.1| KLTH0C02442p [Lachancea thermotolerans CBS 6340]
Length = 356
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 147/323 (45%), Positives = 215/323 (66%), Gaps = 14/323 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPK ++DV Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 25 PWVEKYRPKKLEDVTAQDHAVNVLKKTLQSANLPHMLFYGPPGTGKTSTILALTKELYGP 84
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
+ + R+LELNASD+RGI ++RDK+K+FA+ T S +Q+ + PCPP+KI+ILDEADSM
Sbjct: 85 ALMKSRVLELNASDERGIAIVRDKIKSFARLTVSKPSQNDREKYPCPPYKIIILDEADSM 144
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFKPL + L+R+QY+
Sbjct: 145 TADAQSALRRTMENYSNVTRFCLICNYVTRIIDPLASRCSKFRFKPLDSSNALSRVQYVA 204
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG---EGIVNEDVLEVTGVIPNP 266
++E + D LE +++ S GD+RRAI LQS +++ I V E+ G +P
Sbjct: 205 KEERLQYDEHVLEKILDVSQGDLRRAIMLLQSTSKIVKHLDPPQITALTVDELAGTVPTE 264
Query: 267 WIEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD--KQKALILE 321
+ +L + + + ++ + ++I +S + +Q H +++ S K KA L
Sbjct: 265 LLNELVAKIATANLETIKINVREMIKSGWSGASVVNQLHHYYINSDQYSTAFKNKASWL- 323
Query: 322 KLAECNARLQDGASEYIQILDLG 344
+ + +++L +G++E+IQ+L+L
Sbjct: 324 -IFDADSKLTNGSNEHIQLLNLA 345
>gi|448098395|ref|XP_004198917.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
gi|359380339|emb|CCE82580.1| Piso0_002311 [Millerozyma farinosa CBS 7064]
Length = 360
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 153/346 (44%), Positives = 216/346 (62%), Gaps = 24/346 (6%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + PWVEKYRPK +D+V Q+ V +LKK L A+LPH LFYGPPGTGKTST++A
Sbjct: 14 RIEHTPWVEKYRPKNLDEVASQEHTVKILKKTLESANLPHMLFYGPPGTGKTSTILALAK 73
Query: 89 QLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ---QTASGFNQDGKPCPPFKIVILD 144
QL+G +++ R+LELNASD+RGI ++R KVK FA+ AS + + PCPP+K++ILD
Sbjct: 74 QLYGPRLFKSRVLELNASDERGISIVRQKVKNFARLAVSNASKEDLENYPCPPYKLIILD 133
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT+ AQ+ALRRT+E + TRFCLICNY++ II PL+SRCSKFRF L L+R
Sbjct: 134 EADSMTNDAQSALRRTIENYSGVTRFCLICNYITRIIDPLSSRCSKFRFGLLNNENALSR 193
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG-------------- 250
++YI E+E++ D ETL+ S GD+R+AIT LQS +RL
Sbjct: 194 IKYIVEKENLNVDEDVPETLLSISNGDLRKAITFLQSASRLSFALANPDDSEDRMHVDEE 253
Query: 251 ---IVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
I + E+ G+IP+ +++L+ + + + + +++ IL +SA Q+ DQ HD
Sbjct: 254 HGKITKSAIQEIAGIIPDDILKRLVTIIEKGNTREIFNTVQEFILGGWSAQQVLDQLHDS 313
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
+ SL + K I L + +L G E+IQ+L+ V KA
Sbjct: 314 YVMNHSLRPELKNKIALVLFSSDCKLNSGTDEHIQLLNFCLQVAKA 359
>gi|146093994|ref|XP_001467108.1| putative replication factor C, subunit 2 [Leishmania infantum
JPCM5]
gi|134071472|emb|CAM70161.1| putative replication factor C, subunit 2 [Leishmania infantum
JPCM5]
Length = 354
Score = 293 bits (751), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 154/349 (44%), Positives = 217/349 (62%), Gaps = 14/349 (4%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYG 73
P+ + + T PWVEKYRP+T+ +V Q E V L+ CL GA++PHFLF+G
Sbjct: 7 PAQKRAKTEGASDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHG 66
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-- 130
PPGTGKT++++A H+LFG D R R+ ELNASDDRGI V+R+KVK FAQ S
Sbjct: 67 PPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSV 126
Query: 131 ---DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
DGK P PPFK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+
Sbjct: 127 TQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIA 186
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
SRC+K+RFKPL ++ + R++Y+ + E + +L L SGGD+R AI LQS +
Sbjct: 187 SRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKA 246
Query: 246 KGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIE---DLILEAYSATQLFDQF- 301
K G+ + ED + V+G +P +++ L LE+ I+ L+ E ++A Q+ Q
Sbjct: 247 K-GDDLSKEDFVSVSGSVPADVMQRYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQMQ 305
Query: 302 HDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
H +V + L+ Q+ I+ KL + RL DG +Y+Q+LD+GS V A
Sbjct: 306 HYLVSAECPLNSAQRGKIMLKLCQTERRLADGGDDYLQLLDIGSAVCSA 354
>gi|401884137|gb|EJT48309.1| DNA replication factor (activator 1 subunit) [Trichosporon asahii
var. asahii CBS 2479]
Length = 389
Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 152/359 (42%), Positives = 216/359 (60%), Gaps = 50/359 (13%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKTIDDV Q V+VL+K L +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 19 PWVEKYRPKTIDDVSSQDNTVAVLRKALMSTNLPHMLFYGPPGTGKTSTILALARQLFGP 78
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTA---SGFNQDGK--PCPPFKIVILDEAD 147
D+++ R+LELNASD+RGI V+R+K+KTFA++T G DGK PCPP+K++ILDEAD
Sbjct: 79 DLFKSRVLELNASDERGISVVREKIKTFARETPRHNPGVASDGKEYPCPPYKLIILDEAD 138
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ+ALRR ME ++ TRFCL+CNYV+ II+P+ SRCSKFRF+PL +++ R++
Sbjct: 139 SMTQDAQSALRRIMETYSRITRFCLVCNYVTRIIEPVASRCSKFRFRPLEQSSSQARMEM 198
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE------------- 254
I E E V D LE +++ +GGD+R+AIT LQ+ RL
Sbjct: 199 IAENEGVQADPGVLELILQLAGGDLRKAITYLQTAQRLHQASDPPTPITAMSGKSSSAPA 258
Query: 255 -----------------DVLEVTGVIPNPWIEKLLK--------------VDSFQVLEKY 283
V E++GV+ + I+ LL+ + F+ + K
Sbjct: 259 LPTAFFPLSYLKPSELTAVHEISGVVSSSVIDNLLRSMGIEPGSGLNPTLANGFEGVRKA 318
Query: 284 IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
+ + E +S Q+ +Q HD ++ +++ K+ +AEC+ L +G E +Q+L+
Sbjct: 319 VRSVGREGWSTGQVLEQVHDALIPLAAIPTIAKSNAALAIAECDKALCEGGDEELQLLE 377
>gi|326482375|gb|EGE06385.1| DNA replication factor C subunit Rfc2 [Trichophyton equinum CBS
127.97]
Length = 386
Score = 293 bits (750), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 154/354 (43%), Positives = 220/354 (62%), Gaps = 32/354 (9%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
V+ + ++ + PWVEKYRPKT+DDV Q +SVL++ L ++LPH LFYG PGTGKTS
Sbjct: 22 VTNNQESDQQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTS 81
Query: 82 TMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK-----PC 135
T++A LFG + R R+LELNASD+RGI ++R+K+K FA+ S D PC
Sbjct: 82 TILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPTDPAYRSQYPC 141
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
PPFKI+ILDEADSMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II P+ SRCSKFRFK
Sbjct: 142 PPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKV 201
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL-KGGEG---- 250
L + +RL I E + + +ETL+ S GD+R+AIT +QS ARL + G G
Sbjct: 202 LDGSAAQSRLIEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGSGKKKD 261
Query: 251 --------------IVNEDVLEVTGVIPNPWIEKLL-------KVDSFQVLEKYIEDLIL 289
I + EV+G++P +++++ + ++ + + DL+
Sbjct: 262 SSDKEMELDDVKPTITVRSIEEVSGLVPETVMQRVVAALRPSKRASKYEEISSLVADLVA 321
Query: 290 EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +SA+Q+ Q + V+ S++D QK IL+ +E + RL DGA E++ LD
Sbjct: 322 DGWSASQVLSQTYQAVLQDESIADVQKNQILKVCSEFDKRLVDGADEHLSTLDF 375
>gi|354544379|emb|CCE41102.1| hypothetical protein CPAR2_300910 [Candida parapsilosis]
Length = 357
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 155/338 (45%), Positives = 214/338 (63%), Gaps = 31/338 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK ++D+ Q+ V VL+K +S +LPH LFYGPPGTGKTST++A QL+G
Sbjct: 15 PWVEKYRPKNLNDIASQEHAVKVLEKQVSTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 74
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI ++R K+K FA+ T S + PCPP+KI+ILDEADSM
Sbjct: 75 NLYKSRVLELNASDERGISIVRQKIKNFARLTVSNPTPEDLKNYPCPPYKIIILDEADSM 134
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME TRF L+CNY++ II PL SRCSKFRFK L L RL+YI
Sbjct: 135 TNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNSENSLNRLKYIA 194
Query: 210 EQESVMCDFK-----ALETLVETSGGDMRRAITCLQSCARL---------KGGEG----I 251
+E + D L ++ S GD+R+AIT LQS ++L + G+G I
Sbjct: 195 NEEHLNLDKSQGEDAVLNEVLRISNGDLRKAITYLQSASKLSTSLQLEDDEDGDGKAGLI 254
Query: 252 VNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKY---IEDLILEAYSATQLFDQFHDIVM-- 306
+ + E GV+P+ I+ L+K + EK + D+I +SA QL DQ H++++
Sbjct: 255 TKQSIRETAGVLPDDLIDNLVKTIRSKNEEKLVAVVNDVISSGWSAQQLIDQLHEVLVMD 314
Query: 307 -SASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
S +SL Q ALI L + + +L G E+IQ+L+L
Sbjct: 315 DSINSLVKNQIALI---LFDTDKKLNFGTDEHIQLLNL 349
>gi|453082922|gb|EMF10969.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 406
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 157/366 (42%), Positives = 218/366 (59%), Gaps = 49/366 (13%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
K N+ PWVEKYRP+++DD+ Q V+VL++ L A+LPH LFYGPPGTGKTST++A
Sbjct: 29 KDDNRLQPWVEKYRPRSLDDIAAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLAL 88
Query: 87 CHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK-----PCPPFKI 140
QL+G ++ + R+LELNASD+RGI ++R+KVK FA+ S + PCPP+KI
Sbjct: 89 AKQLYGPELVKSRVLELNASDERGISIVREKVKDFARMQLSNPPHAEEYRKKYPCPPYKI 148
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEADSMT AQ+ALRRTME +K TRFCL+CNYV+ II PL SRCSKFRFK L E
Sbjct: 149 IILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKSLDEGN 208
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED----- 255
R++ I E+V D +ETL+ S GD+R+AIT LQS ARL G D
Sbjct: 209 AGKRIEDIARLENVKLDEGVVETLLRCSEGDLRKAITFLQSAARLVGATSTAATDTKVGK 268
Query: 256 -----------------------------VLEVTGVIPNPWIEKLLKVDS--------FQ 278
+ E+ GVIP+ I++L+ + +
Sbjct: 269 RKRKTVEEDEEEDAMDVDAAPAQPVTVASIEEIAGVIPHSTIDRLITAVTPTGRGTPPYG 328
Query: 279 VLEKYIEDLILEAYSATQLFDQFHD-IVMSASSLSDKQKALILEKLAECNARLQDGASEY 337
+ K +EDL+ E +SA+Q+ Q ++ +V++ D K I+ +E + RL DG+ E+
Sbjct: 329 PIAKAVEDLVAEGWSASQVVTQLYERVVLTNEVTGDAAKNKIMLVFSETDKRLVDGSDEH 388
Query: 338 IQILDL 343
+ +LDL
Sbjct: 389 LTVLDL 394
>gi|315042534|ref|XP_003170643.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
gi|311344432|gb|EFR03635.1| replication factor C subunit 2 [Arthroderma gypseum CBS 118893]
Length = 386
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/354 (43%), Positives = 218/354 (61%), Gaps = 32/354 (9%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
V+ + + + PWVEKYRPKT+DDV Q +SVL++ L ++LPH LFYG PGTGKTS
Sbjct: 22 VTNNQDSDQQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTS 81
Query: 82 TMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK-----PC 135
T++A LFG + R R+LELNASD+RGI ++R+K+K FA+ S D PC
Sbjct: 82 TILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPPDPAYRSQYPC 141
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
PPFKI+ILDEADSMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II P+ SRCSKFRFK
Sbjct: 142 PPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKV 201
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL-KGGEG---- 250
L + RL I E + + +ETL+ S GD+R+AIT +QS ARL + G G
Sbjct: 202 LDGSAAQNRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARYGSGKKKD 261
Query: 251 --------------IVNEDVLEVTGVIPNPWIEKLL-------KVDSFQVLEKYIEDLIL 289
I + EV+G++P +++++ + +++ + + DL+
Sbjct: 262 TSDKEMELDDTKPRITVRSIEEVSGLVPETVMQQVIAALRPNKRTSNYEQISNLVADLVA 321
Query: 290 EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +SA+Q+ Q + V+ S+SD K IL+ +E + RL DGA E++ LD
Sbjct: 322 DGWSASQVLSQTYQAVLQDESISDAHKNQILKVCSEFDKRLVDGADEHLSTLDF 375
>gi|398019618|ref|XP_003862973.1| replication factor C, subunit 2, putative [Leishmania donovani]
gi|322501204|emb|CBZ36283.1| replication factor C, subunit 2, putative [Leishmania donovani]
Length = 354
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/349 (44%), Positives = 217/349 (62%), Gaps = 14/349 (4%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYG 73
P+ + + T PWVEKYRP+T+ +V Q E V L+ CL GA++PHFLF+G
Sbjct: 7 PAQKRAKTEGAPDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHG 66
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-- 130
PPGTGKT++++A H+LFG D R R+ ELNASDDRGI V+R+KVK FAQ S
Sbjct: 67 PPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGAVSSSGSSV 126
Query: 131 ---DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
DGK P PPFK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+
Sbjct: 127 TQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIA 186
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
SRC+K+RFKPL ++ + R++Y+ + E + +L L SGGD+R AI LQS +
Sbjct: 187 SRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKA 246
Query: 246 KGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIE---DLILEAYSATQLFDQF- 301
K G+ + ED + V+G +P +++ L LE+ I+ L+ E ++A Q+ Q
Sbjct: 247 K-GDDLSKEDFVSVSGSVPADVMQRYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQMQ 305
Query: 302 HDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
H +V + L+ Q+ I+ KL + RL DG +Y+Q+LD+GS V A
Sbjct: 306 HYLVSAECPLNSAQRGKIMLKLCQTERRLADGGDDYLQLLDIGSAVCSA 354
>gi|171680165|ref|XP_001905028.1| hypothetical protein [Podospora anserina S mat+]
gi|170939709|emb|CAP64935.1| unnamed protein product [Podospora anserina S mat+]
Length = 405
Score = 293 bits (749), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 160/361 (44%), Positives = 217/361 (60%), Gaps = 50/361 (13%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD--------------------LPHFLFYG 73
PWVEKYRPKT+ DV Q ++VL++ L ++ LPH LFYG
Sbjct: 35 PWVEKYRPKTLSDVTAQDHTITVLQRTLQASNVCSPPSPPSSFPTNMTLSPQLPHMLFYG 94
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ----QTASGF 128
PPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+ +S
Sbjct: 95 PPGTGKTSTILALAKELYGPELMKSRVLELNASDERGISIVREKVKDFARMQLTNVSSAA 154
Query: 129 NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
+ PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRC
Sbjct: 155 YKARYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRC 214
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
SKFRFK L + RL+ I E+E V D A+E L+ + GD+R+AIT LQS ARL G
Sbjct: 215 SKFRFKSLDQGNAKKRLEEIAEKEKVGLDEGAVEGLINCAEGDLRKAITYLQSAARLVGA 274
Query: 249 -----------------EGIVNEDVLE-VTGVIPNPWIEKLLKV-------DSFQVLEKY 283
+ V+ +L+ + GVIP+ I LLK ++ + K
Sbjct: 275 VQQPGGGDDGEDGMDVDKKTVSVKILQDIAGVIPDETIHTLLKAMRPTTFGGNYTPIAKE 334
Query: 284 IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ED++ + +SA Q+ Q + V+ ++ D QK IL +E + RL DGA E++ ILDL
Sbjct: 335 VEDMVADGWSAGQVVTQLYQAVVYDETIEDAQKNKILLVFSEIDKRLVDGADEHLSILDL 394
Query: 344 G 344
Sbjct: 395 A 395
>gi|157872662|ref|XP_001684866.1| putative replication factor C, subunit 2 [Leishmania major strain
Friedlin]
gi|68127936|emb|CAJ06571.1| putative replication factor C, subunit 2 [Leishmania major strain
Friedlin]
Length = 354
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 154/349 (44%), Positives = 217/349 (62%), Gaps = 14/349 (4%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYG 73
P+ + + T PWVEKYRP+T+ +V Q E V L+ CL GA++PHFLF+G
Sbjct: 7 PAQKRAKTEGASDTAGAAAPWVEKYRPRTLAEVEAQDEAVGALRACLKEGANMPHFLFHG 66
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-- 130
PPGTGKT++++A H+LFG D R R+ ELNASDDRGI V+R+KVK FAQ S
Sbjct: 67 PPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGISVVREKVKIFAQGAVSSSGSSV 126
Query: 131 ---DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
DGK P PPFK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+
Sbjct: 127 TQSDGKVYPVPPFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIA 186
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
SRC+K+RFKPL ++ + R++Y+ + E + +L L SGGD+R AI LQS +
Sbjct: 187 SRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLHALDTVSGGDLRLAIMHLQSAQKA 246
Query: 246 KGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIE---DLILEAYSATQLFDQF- 301
K G+ + ED + V+G +P +++ L LE+ I+ L+ E ++A Q+ Q
Sbjct: 247 K-GDDLSKEDFVSVSGSVPADVMQQYLSALFSHRLEEVIQASRRLVAEGFAAAQVLLQMQ 305
Query: 302 HDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
H +V + L+ Q+ I+ KL + RL DG +Y+Q+LD+GS V A
Sbjct: 306 HYLVSAECPLNSAQRGKIMLKLCQTERRLADGGDDYLQLLDIGSAVCSA 354
>gi|295672510|ref|XP_002796801.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226282173|gb|EEH37739.1| replication factor C subunit 2 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 161/376 (42%), Positives = 224/376 (59%), Gaps = 49/376 (13%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKY---------RPKTIDDVIEQQEVVSVLKKCLSGADL 66
S K S + TR +P WVEKY RPKT+DDV Q+ ++VL++ L ++L
Sbjct: 20 SKPKASEKEADNTRLQP--WVEKYGIANPGIPSRPKTLDDVASQEHTITVLQRTLQASNL 77
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTA 125
PH LFYGPPGTGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+
Sbjct: 78 PHMLFYGPPGTGKTSTILALSKSLFGPQLYRSRILELNASDERGISIVREKIKDFARMQL 137
Query: 126 SGFNQ------DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
S + PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+
Sbjct: 138 SHPPVSDTAYCEKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTR 197
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II PL SRCSKFRFK L + +RL+ I E + +ETL+ S GD+RRAIT +
Sbjct: 198 IIDPLASRCSKFRFKALDGSAAGSRLEEIARVEKLRLADGCIETLIRCSEGDLRRAITFM 257
Query: 240 QSCARL-----------------------KGGEGIVN-EDVLEVTGVIPNPWIEKLLKVD 275
QS ARL G EG++ + E+ GV+P+ + +L+K
Sbjct: 258 QSAARLVGSGLVSKPPPGKDEGGDEDMTDAGDEGVITVRTIEEIAGVVPDDIVNRLVKAL 317
Query: 276 S-------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
++ + K + D++ + +SA+Q+ Q + I++ S+ D K I+ +E +
Sbjct: 318 QPKKGRLPYEEVSKVVTDIVADGWSASQMLTQLYQIIVFDDSIEDIHKNSIVMVFSEFDK 377
Query: 329 RLQDGASEYIQILDLG 344
RL DGA E++ ILDL
Sbjct: 378 RLIDGADEHLTILDLA 393
>gi|412990864|emb|CCO18236.1| predicted protein [Bathycoccus prasinos]
Length = 350
Score = 291 bits (746), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/316 (48%), Positives = 210/316 (66%), Gaps = 8/316 (2%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
K PWV+KYRPK + DV Q EVVS L+K + +LPH LFYGPPGTGKT+ +A C Q
Sbjct: 21 KKKEPWVDKYRPKKVSDVAYQTEVVSALEKAMETHNLPHMLFYGPPGTGKTTCALAICKQ 80
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
L+G ++ ++R+LELNASD+RGI V+R K+K+FA T G G PCPP+KI+ILDEADS
Sbjct: 81 LYGPELGKKRVLELNASDERGISVVRGKIKSFASTTV-GEGVPGYPCPPYKILILDEADS 139
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+ AQ+ALRR ME ++ TRF ++CNYVS II P++SRC+KFRFK L TM R+ +I
Sbjct: 140 MTNDAQSALRRMMETYSRVTRFFILCNYVSKIIDPISSRCAKFRFKSLDGGTMHERINFI 199
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
+ E++ L+ L S GDMR+AIT LQS A L G E + + + EV GVIP+ I
Sbjct: 200 AKGENLQLAEGTLQALEHVSAGDMRKAITLLQSAASLFGPE-LTGDRIREVAGVIPDEKI 258
Query: 269 EKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
E+LL++ DS Q + ED++ + + Q+ +QF + + L D+ KA I KL
Sbjct: 259 EELLQLCVAGDS-QKSQALAEDILKDGFPCLQILEQFGYYLADSDLLEDEMKAEICLKLG 317
Query: 325 ECNARLQDGASEYIQI 340
E +L DGA E++Q+
Sbjct: 318 EVEKKLVDGADEWLQL 333
>gi|403350390|gb|EJY74655.1| ATPase, AAA family protein [Oxytricha trifallax]
Length = 374
Score = 290 bits (743), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 152/362 (41%), Positives = 223/362 (61%), Gaps = 22/362 (6%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVST---------------SGKTRNKPVPWVEKYRPKTID 45
M+ FL+ K+ SSS ++T S +R K PWVEKYRP ++
Sbjct: 1 MDKFLKGSNPTKNLGSSSGIQINTRTNQTQDHEMKDQTQSAPSRPKFTPWVEKYRPSKVE 60
Query: 46 DVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNA 104
+V Q EVVS L++ + +PH +FYGPPGTGKTST++A +LFG + +++R+LELNA
Sbjct: 61 EVSHQTEVVSALRQSILTGQVPHLMFYGPPGTGKTSTILALSKELFGHEFFKQRVLELNA 120
Query: 105 SDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164
SD+RGI ++R+K+K FAQ+ S CPP +I+ILDEADSMT AQAALRR +E+
Sbjct: 121 SDERGIAIVREKIKKFAQRKISKHPDSSFQCPPIQIIILDEADSMTIDAQAALRRIIEQY 180
Query: 165 TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV-MCDFKALET 223
+ +TRFC+ICNY+S II PL SRC KFRF P+A+ + RL+ ICE+E+V +
Sbjct: 181 STNTRFCIICNYISKIIDPLASRCVKFRFSPIAKEAQIERLKMICERENVNVASDNVFNA 240
Query: 224 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV----DSFQV 279
LV+ S GD+RR+I LQ+ + K + V +D+ ++GV+P I K+ +V D F
Sbjct: 241 LVDISAGDLRRSINTLQTASSFKLQQLNV-KDIESISGVVPEDVIRKIERVVTQTDGFSE 299
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
+++ ++LIL+ + QL Q D + LSD +KA I E +AE + ++ G E +
Sbjct: 300 VQQLTQELILDGFDVQQLMIQMLDYFLINDKLSDLKKARISEIVAETDVKVIQGGDEELN 359
Query: 340 IL 341
+L
Sbjct: 360 LL 361
>gi|119492485|ref|XP_001263608.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
gi|119411768|gb|EAW21711.1| DNA replication factor C subunit Rfc2, putative [Neosartorya
fischeri NRRL 181]
Length = 420
Score = 290 bits (741), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 161/393 (40%), Positives = 225/393 (57%), Gaps = 66/393 (16%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+SSK + + + + PWVEKYRPKT+DDV Q VL++ L ++LPH LFYGPP
Sbjct: 20 TSSKQKPTDGKEEQTRLQPWVEKYRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGPP 79
Query: 76 GTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQT--------AS 126
GTGKTST++A LFG +YR RILELNASD+RGI ++R+KVK FA+ +S
Sbjct: 80 GTGKTSTILALAKSLFGPALYRSRILELNASDERGIGIVREKVKGFARTQLSQPTGLDSS 139
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
F Q PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ +I+PL S
Sbjct: 140 YFEQ--YPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRVIEPLAS 197
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RCSKFRFKPL + RL +I E++ D ++ L+ GD+RRAIT +QS ARL
Sbjct: 198 RCSKFRFKPLDNSAAAERLAHIARLENLKLDEGVIDKLISCGEGDLRRAITYMQSAARLV 257
Query: 247 G-----GEGIVNED---------------VLEVTGVIPNPWIEKLLKV-------DSFQV 279
G G+ +ED + E+ GV+P I++L++ S++
Sbjct: 258 GAGRPTGQKDGDEDSEMTDASSEPITVRMIEEIAGVVPESVIDRLVQAMQPKKLGSSYEA 317
Query: 280 LEKYIEDLILEAYSATQLFDQFHDI----------------------------VMSASSL 311
+ + D++ + +SA QL Q + ++ ++
Sbjct: 318 VSVVVTDIVADGWSAGQLVLQVSSVLIPLKGSVQLRDSILVVKDANNPQLYRRIVYNDAI 377
Query: 312 SDKQKALILEKLAECNARLQDGASEYIQILDLG 344
D QK I+ +E + RL DGA E++ ILDL
Sbjct: 378 PDIQKNKIVTAFSEMDKRLVDGADEHLSILDLA 410
>gi|72390425|ref|XP_845507.1| replication factor C, subunit 2 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|62360360|gb|AAX80776.1| replication factor C, subunit 2, putative [Trypanosoma brucei]
gi|70802042|gb|AAZ11948.1| replication factor C, subunit 2, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261328911|emb|CBH11889.1| replication factor C, subunit 2, putative [Trypanosoma brucei
gambiense DAL972]
Length = 347
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 147/326 (45%), Positives = 210/326 (64%), Gaps = 13/326 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
PW+EKYRPK++D+V Q+EVV L+ L GA +PHFLF+GPPGTGKT+ ++A H+LFG
Sbjct: 20 PWIEKYRPKSLDEVKSQEEVVQALRSTLRQGASMPHFLFHGPPGTGKTTAILAVAHELFG 79
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ----DGK--PCPPFKIVILDE 145
D + R+ ELNASDDRGIQVIR+KVK+FAQ Q DGK P PPFK++ILDE
Sbjct: 80 PDYIKSRVRELNASDDRGIQVIREKVKSFAQTAVGNVVQKVQSDGKIYPVPPFKVIILDE 139
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD++ AQAALRR ME + TRFC++CNYV+ II P+ SRC+K+RFKPL + + R+
Sbjct: 140 ADALLPDAQAALRRMMEDFSDVTRFCILCNYVTRIIDPIASRCAKYRFKPLIKEALYERI 199
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPN 265
+ +E++ +++ L SGGD+R AI LQ R G + + ED +EV+G +P
Sbjct: 200 SEVASRENIQISRSSIDALDHVSGGDLRLAIMYLQYAQRANGND-LQKEDFVEVSGSVPA 258
Query: 266 PWIEKLLK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILE 321
++ L + SF + + L+ + Y A Q+ Q D ++SA+ L+ Q+ I
Sbjct: 259 SMMQTYLAALMMKSFDEVRSVTKRLVQQGYPACQILAQLQDYIVSAACPLNSAQRGSIAL 318
Query: 322 KLAECNARLQDGASEYIQILDLGSIV 347
KL + RL DG +++Q+L+LGS +
Sbjct: 319 KLCDIEKRLSDGCDDFVQLLELGSFI 344
>gi|296807688|ref|XP_002844229.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
gi|238843712|gb|EEQ33374.1| activator 1 41 kDa subunit [Arthroderma otae CBS 113480]
Length = 390
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 155/345 (44%), Positives = 215/345 (62%), Gaps = 35/345 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+DDV Q +SVL++ L ++LPH LFYG PGTGKTST++A LFG
Sbjct: 35 PWVEKYRPKTLDDVAAQDHTISVLQRNLHASNLPHMLFYGSPGTGKTSTILAMSKSLFGP 94
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFA-----QQTASGFNQDGKPCPPFKIVILDEAD 147
+ R R+LELNASD+RGI ++R+K+K FA Q A + PCPPFKIVILDEAD
Sbjct: 95 ALVRSRVLELNASDERGISIVREKIKDFARMHLSQPPADPAYRSQYPCPPFKIVILDEAD 154
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II P+ SRCSKFRFK L + +RL
Sbjct: 155 SMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVASRCSKFRFKVLDGSAARSRLVE 214
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL-KGGEG---------------- 250
I E + + +ETL+ S GD+R+AIT +QS ARL + G G
Sbjct: 215 IARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARLARFGSGKKKEVSDETAEAKDTK 274
Query: 251 --IVNEDVLEVTGVIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQ- 300
I + + EV+G++P +++++ +V + + + DL+ + +SA+Q+ Q
Sbjct: 275 SKITVKSIEEVSGLVPETVMDRVMAALRPNKRVSKYDEISNLVTDLVADGWSASQVLSQC 334
Query: 301 --FHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ V+ ++SD QK IL+ +E + RL DGA E++ LD
Sbjct: 335 FKTYQAVLQDEAVSDVQKNQILKVCSEFDKRLVDGADEHLSTLDF 379
>gi|340054249|emb|CCC48545.1| putative replication factor C, subunit 2 [Trypanosoma vivax Y486]
Length = 347
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 157/348 (45%), Positives = 216/348 (62%), Gaps = 23/348 (6%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYG 73
P + K V S P PWVEKYRPK++D+V Q+EVV L+ L GA +PHFLF+G
Sbjct: 5 PPTKKARVEPS----MDPRPWVEKYRPKSLDEVKSQEEVVQALRSTLRQGASMPHFLFHG 60
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-- 130
PPGTGKT+ ++A +LFG D R R+ ELNASDDRGIQVIR+KVK FAQ G Q
Sbjct: 61 PPGTGKTTAILAVAQELFGPDYIRSRVRELNASDDRGIQVIREKVKAFAQSAVGGVGQKV 120
Query: 131 --DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
DG P PPFK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+ S
Sbjct: 121 QSDGNVYPVPPFKLIILDEADALLPDAQAALRRMMEDYSDVTRFCILCNYVSRIIDPIAS 180
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RC+K+RFKPL + + R+ + +E + +++ L TSGGDMR AI LQ A+
Sbjct: 181 RCAKYRFKPLVRHALRERILEVATREGLRMSDASIDALDRTSGGDMRLAIMYLQH-AQKA 239
Query: 247 GGEGIVNEDVLEVTGVIP----NPWIEKLL--KVDSFQVLEKYIEDLILEAYSATQLFDQ 300
G+ + NED +EV+G +P + ++ LL K D ++ K I I + Y A+Q+ Q
Sbjct: 240 HGDDLTNEDFVEVSGKVPAGLLDNYVAALLSKKFDDVFMVTKQI---IQQGYPASQVLAQ 296
Query: 301 FHDIVMS-ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
+S A L+ Q+ I K+ + R+ DG + +Q+LDLG+++
Sbjct: 297 LQQYFVSPACPLNSAQRGAISLKICDVEKRIMDGGDDLVQLLDLGTVI 344
>gi|449299144|gb|EMC95158.1| hypothetical protein BAUCODRAFT_35150 [Baudoinia compniacensis UAMH
10762]
Length = 411
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 161/369 (43%), Positives = 219/369 (59%), Gaps = 55/369 (14%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N+ PWVEKYRP+++DDV Q V+VL++ L ++LPH LFYGPPGTGKTST++A Q
Sbjct: 32 NRLQPWVEKYRPRSLDDVTAQDHTVTVLRRMLQSSNLPHMLFYGPPGTGKTSTVLALAKQ 91
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS-------GFNQDGK-PCPPFKI 140
L+G ++ + R+LELNASD+RGI ++R+KVK FA+ S G K PCPP+KI
Sbjct: 92 LYGPELIKSRVLELNASDERGISIVREKVKDFARMQLSNPPAGPAGEEYRKKYPCPPYKI 151
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
V+LDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL SRCSKFRFK L E
Sbjct: 152 VVLDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPLASRCSKFRFKSLDEAN 211
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG------------ 248
RL+ I + E+V +ETL+ S GD+R+AIT LQS A+L G
Sbjct: 212 AGKRLEDIAKLENVRLQDGVIETLLRCSEGDLRKAITFLQSAAKLVGAVQAPAGTLPDKK 271
Query: 249 --------------------------EGIVNEDVLEVTGVIPNPWIEKLL-------KVD 275
+ + ++ GVIP+ I+ L K
Sbjct: 272 RKRAKIEDDEDEDAMDVDQQTTGAESPAVTVRSIEDIAGVIPDGTIDSLFTAMQPSSKGT 331
Query: 276 SFQVLEKYIEDLILEAYSATQLFDQFHD-IVMSASSLSDKQKALILEKLAECNARLQDGA 334
+ + K +EDLI E +SA+Q+ +Q +D +V+ + D+QKA I+ + + RL DG+
Sbjct: 332 IYGRVAKVVEDLIAEGWSASQIVNQLYDRVVVHDEATGDRQKARIVCIFSAVDKRLVDGS 391
Query: 335 SEYIQILDL 343
E++ ILDL
Sbjct: 392 DEHLTILDL 400
>gi|452836376|gb|EME38320.1| hypothetical protein DOTSEDRAFT_161207 [Dothistroma septosporum
NZE10]
Length = 410
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 161/368 (43%), Positives = 220/368 (59%), Gaps = 54/368 (14%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N+ PWVEKYRPK++DDV Q V+VL++ L A+LPH LFYGPPGTGKTST++A Q
Sbjct: 31 NRLQPWVEKYRPKSLDDVTAQDHTVTVLRRTLQSANLPHMLFYGPPGTGKTSTVLALAKQ 90
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS-------GFNQDGK-PCPPFKI 140
L+G ++ + R+LELNASD+RGI ++R+KVK FA+ S G K PCPP+KI
Sbjct: 91 LYGPELMKTRVLELNASDERGISIVREKVKDFARMQLSNPPSGPAGEEYKKKYPCPPYKI 150
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
++LDEADSMT AQ+ALRRTME +K TRFCL+CNYV+ II PL SRCSKFRFK L E
Sbjct: 151 IVLDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRIIDPLASRCSKFRFKSLDEGN 210
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG------------ 248
R++ I + E V + ETL+ S GD+R+AIT LQS ARL G
Sbjct: 211 AGRRIEDIAKLEGVKMEEGVTETLLRCSEGDLRKAITFLQSAARLVGAVQLGAPSGDKKR 270
Query: 249 --EGIVNED----------------------VLEVTGVIPNPWIEKLL--------KVDS 276
+ +V +D + E+ GVIP I++L +
Sbjct: 271 KRKAVVEDDDAMDIDSESTPTTSSIPITISSIEEIAGVIPEDTIDRLRTAITPKSGRSAP 330
Query: 277 FQVLEKYIEDLILEAYSATQLFDQFHD-IVMSASSLSDKQKALILEKLAECNARLQDGAS 335
+ + + +EDL+ E +SATQ+ Q +D IV+ ++ D K I+ ++ + RL DG+
Sbjct: 331 YGPIAQAVEDLVAEGWSATQIVTQLYDKIVLLDETVDDAAKNKIMLFFSQTDKRLVDGSD 390
Query: 336 EYIQILDL 343
E++ ILDL
Sbjct: 391 EHLTILDL 398
>gi|146181988|ref|XP_001023745.2| ATPase, AAA family protein [Tetrahymena thermophila]
gi|146143985|gb|EAS03500.2| ATPase, AAA family protein [Tetrahymena thermophila SB210]
Length = 373
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 147/320 (45%), Positives = 212/320 (66%), Gaps = 5/320 (1%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP I++V Q+EV+ L+ L +LPH + +GPPGTGKTS+++A Q
Sbjct: 39 NNLLPWVEKYRPNKIEEVSYQEEVIKSLQGVLLSGNLPHLILHGPPGTGKTSSILAFAKQ 98
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
L+G Y+ERILELNASDDRGIQ++RDK+K FAQQ S CP FKI+ILDEADS
Sbjct: 99 LYGPTFYKERILELNASDDRGIQIVRDKIKKFAQQVVSKNPDKSFKCPNFKIIILDEADS 158
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + +TRFC+ICNY++ II+PL SRC KFRFKP+ +T+L+ I
Sbjct: 159 MTTEAQSALRRIIEDTSSTTRFCIICNYITKIIEPLGSRCVKFRFKPIPLEAQITKLEEI 218
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
C+ E + + +ALE L++ S GD+R+++ LQS + L + I E + E++GV I
Sbjct: 219 CKTEDIEYEKEALEKLIKISNGDLRKSVNLLQSASTLYEKD-IKVEVIEEISGVNYLLCI 277
Query: 269 EKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
KL K+ F L++ ++ + + YS QL QF + ++S+ ++ +KA ILEK+A
Sbjct: 278 NKLYKLLIGKDFDKLKEGVKQFLYQGYSPDQLLYQFSEYIISSKDFNEVKKARILEKIAL 337
Query: 326 CNARLQDGASEYIQILDLGS 345
+ L + A +QIL++ S
Sbjct: 338 ADKGLNERADSELQILNMFS 357
>gi|50304409|ref|XP_452154.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641286|emb|CAH02547.1| KLLA0B13992p [Kluyveromyces lactis]
Length = 352
Score = 288 bits (736), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 150/333 (45%), Positives = 217/333 (65%), Gaps = 15/333 (4%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
+ GK + KP WVEKYRP+ +DDV Q V+VLK+ L A+LPH LFYGPPGTGKTST+
Sbjct: 15 SDGKGQAKP--WVEKYRPRKLDDVAAQDHAVTVLKRTLQTANLPHMLFYGPPGTGKTSTI 72
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFK 139
+A +L+G + R+LELNASD+RGI ++R+KVK FA+ T S ++ PCPP+K
Sbjct: 73 LALTKELYGPHLSNSRVLELNASDERGISIVREKVKNFARLTVSKPSESDLANYPCPPYK 132
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
I+ILDEADSMT AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L +
Sbjct: 133 IIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDSS 192
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL----KGGEGIVNED 255
L+RLQ+I +ES+ + LE +++ S GD+R+AIT LQS A++ I +
Sbjct: 193 NALSRLQFIANEESLKYEDGVLERILDISQGDLRKAITLLQSAAKIVLQNDDANTITLKH 252
Query: 256 VLEVTGVIPNPWIEKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 311
E++G I ++ L+ V D ++++K +++ + + +SA Q H+ + S
Sbjct: 253 ANELSGTIHEEILQDLINVIKGKDLNKIIDK-VQEFVNQGWSAASALTQLHEYYIKNESY 311
Query: 312 SDKQKALILEKLAECNARLQDGASEYIQILDLG 344
+ K + L + +++L +GASE++Q+L+L
Sbjct: 312 DTEFKNKVSWLLFDSDSKLTNGASEHLQMLNLA 344
>gi|444315800|ref|XP_004178557.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
gi|387511597|emb|CCH59038.1| hypothetical protein TBLA_0B01950 [Tetrapisispora blattae CBS 6284]
Length = 350
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 147/327 (44%), Positives = 212/327 (64%), Gaps = 13/327 (3%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N PWVEKYRPK++DDV Q VSVLKK L ++LPH LFYGPPGTGKTST++A +
Sbjct: 16 NNTQPWVEKYRPKSLDDVYSQDHTVSVLKKNLQTSNLPHMLFYGPPGTGKTSTILAMTKE 75
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDE 145
L+G ++ RILELNASD+RGI ++R K+K FA+ S ++D PCPP+KI+ILDE
Sbjct: 76 LYGPNLINSRILELNASDERGINIVRKKIKNFAKLIISKPSKDDLEKYPCPPYKIIILDE 135
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
ADSMT AQ+ALRRTMEK + TRFCLICNYV+ II PL SRC+KFRFK L + + RL
Sbjct: 136 ADSMTSDAQSALRRTMEKYSNITRFCLICNYVTRIIDPLASRCTKFRFKSLNNDNAIERL 195
Query: 206 QYICEQESVMCDFKAL-----ETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260
++I + E++ + + + L++ + GD+RR+IT LQS + I + + E+
Sbjct: 196 KFISKNENLNVENDEINNDFYKNLLQIANGDLRRSITLLQSASNFSLDGPITSARIDELA 255
Query: 261 GVIPNPWIEKLLKVDSFQVLEKYIE----DLILEAYSATQLFDQFHDIVMSASSLSDKQK 316
G++P+ I L+ S + L + IE +++ YSA+ + Q HD + S+ K K
Sbjct: 256 GIVPDVVITNLVDKISNKNLNEIIEFTNNNIVKLGYSASAVILQLHDYYIINSNSDTKFK 315
Query: 317 ALILEKLAECNARLQDGASEYIQILDL 343
+ L + +++L +G++E IQ++ L
Sbjct: 316 NNVSYLLFDIDSKLTNGSNENIQLITL 342
>gi|134057264|emb|CAK96427.1| unnamed protein product [Aspergillus niger]
Length = 388
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 154/363 (42%), Positives = 221/363 (60%), Gaps = 36/363 (9%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
PS K + + + + +P P RPKT+DDV Q VL++ L ++LPH LFYGP
Sbjct: 19 PSKPKPTDNKEEQAKQQPWP---HSRPKTLDDVAAQDHTTKVLQRTLQASNLPHMLFYGP 75
Query: 75 PGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQ 130
PGTGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ ++G +
Sbjct: 76 PGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVREKIKNFARAQLTHSTGLGE 135
Query: 131 D---GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
+ PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SR
Sbjct: 136 EYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASR 195
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
CSKFRFK L RL++I + E++ + ++ L+ S GDMRRAIT +QS A+L G
Sbjct: 196 CSKFRFKALDNTAAGERLEHIAKVENLRLEDGVVDKLIACSEGDMRRAITYMQSAAKLVG 255
Query: 248 G-------------------EGIVNEDVLEVTGVIPNPWIEKLLKV-------DSFQVLE 281
E I + E+ GV+P ++ L++ S++ +
Sbjct: 256 AGRAGKKDEDEDEEMTDQESEVITVRTIEEIAGVVPESVLDALVQAMQPKKIGSSYEAVA 315
Query: 282 KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQIL 341
K + D+I + +SATQL Q + V+ ++ D QK I+ ++ + RL DGA E++ IL
Sbjct: 316 KVVTDIIADGWSATQLLLQLYRRVVFNDAIPDIQKNKIVMVFSDMDRRLVDGADEHLSIL 375
Query: 342 DLG 344
D+
Sbjct: 376 DVA 378
>gi|149234968|ref|XP_001523363.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
gi|146453152|gb|EDK47408.1| activator 1 41 kDa subunit [Lodderomyces elongisporus NRRL YB-4239]
Length = 402
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 153/359 (42%), Positives = 211/359 (58%), Gaps = 49/359 (13%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +DDV Q V VLKK +S +LPH LFYGPPGTGKTST++A QL+G
Sbjct: 36 PWVEKYRPKNLDDVASQDHAVKVLKKQISTGNLPHMLFYGPPGTGKTSTILALAKQLYGP 95
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI ++R K+K FA+ T S +D PCPP+KI+ILDEADSM
Sbjct: 96 NLYKSRVLELNASDERGISIVRQKIKNFAKLTVSNPTEDDLRNYPCPPYKIIILDEADSM 155
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME TRF L+CNY++ II PL SRCSKFRFK L L RL+YI
Sbjct: 156 TNDAQSALRRTMETYANITRFALVCNYITRIIDPLASRCSKFRFKLLNNENSLNRLKYIA 215
Query: 210 EQESVMCDFKA-----LETLVETSGGDMRRAITCLQSCARLKGG------EGIVNED--- 255
++E++ D K L ++ S GDMR+AIT LQS ++L + +NED
Sbjct: 216 KEENLHLDEKGAPDEVLNEVLRISNGDMRKAITYLQSASKLSSSLQLENCKNDMNEDNKG 275
Query: 256 ----------------------------VLEVTGVIPNPWIEKL---LKVDSFQVLEKYI 284
+ E G++P+ I ++ +K + +L +
Sbjct: 276 ESTPSSRKGDEKDDEEEEKDKGLITKASIRETAGILPDTLILQMVESIKQKNEGILINLV 335
Query: 285 EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
D+I +S QL DQ HD ++ ++ +K I L + + +L G E+IQ+L+L
Sbjct: 336 NDIISSGWSVQQLIDQLHDQLVWDDTIDSLKKNQIALTLFDTDKKLNLGTDEHIQLLNL 394
>gi|190360157|sp|P0C7N7.1|RFC2_PHANO RecName: Full=Replication factor C subunit 2; Short=Replication
factor C2
Length = 411
Score = 286 bits (733), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 212/378 (56%), Gaps = 57/378 (15%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
TS + N+ PWVEKYRPKT+ +V Q + +L + L ++LPH LFYGPPGTGKTST+
Sbjct: 24 TSKQESNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTI 83
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN---------- 129
+A QL+G ++ + R+LELNASD+RGI ++R KVK FA+Q A +N
Sbjct: 84 LALAKQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGE 143
Query: 130 ------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
+D CPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II P
Sbjct: 144 AKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDP 203
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L + + R+ I + E V D E LV + GD+R+AIT LQS A
Sbjct: 204 LASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAA 263
Query: 244 RLKGG----------------------------EGIVNEDVLEVTGVIPNPWIEKL---- 271
RL G I E + E+ GVIP P +
Sbjct: 264 RLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDAL 323
Query: 272 -----LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
K + + K +E++I E +SA+Q Q ++ VM + D +K + +E
Sbjct: 324 FPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQLYEQVMFDERVEDIKKVRLAGVFSET 383
Query: 327 NARLQDGASEYIQILDLG 344
+ RL DG E++ +LDLG
Sbjct: 384 DKRLVDGGDEHLAVLDLG 401
>gi|224000545|ref|XP_002289945.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220975153|gb|EED93482.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 346
Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 150/332 (45%), Positives = 207/332 (62%), Gaps = 14/332 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF-G 92
PWVE+YRPK++ DV Q E++S LK + LPH LFYGPPGTGKTS +A C QLF
Sbjct: 16 PWVERYRPKSLQDVSHQGEIISTLKNAVETNRLPHLLFYGPPGTGKTSVALALCRQLFEP 75
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
R R+LELNASD+RGI V+RDK+K FA P PPFKI+ILDEAD++T
Sbjct: 76 SQLRRRVLELNASDERGISVVRDKIKHFASLAIDTETTKKYPNPPFKIIILDEADTVTRD 135
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR +E +K TRF LICNYV+ II+PL SRC+KFRF+PL +M R++YI +E
Sbjct: 136 AQAALRRVIEAYSKVTRFILICNYVTRIIEPLASRCAKFRFQPLPVESMKARIKYIAHEE 195
Query: 213 SVMCDF------KALETLVETSGGDMRRAITCLQSCARLKGGEG--IVNEDVLEVTGVIP 264
C F + ++ ++ S GDMRRA+T LQS L GG G I + + E+ G+ P
Sbjct: 196 H--CQFEEGKEEEVVDEILTLSQGDMRRAVTTLQSAHSLSGGAGEVIKKDSIAEMAGLPP 253
Query: 265 NPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
I+ L++V F ++KY+ D++L+ YSA L ++ + D+ KA I
Sbjct: 254 PALIDGLIEVLRTGKFDDMKKYVMDIVLDGYSAEYLLSALMAKIIVLDGVEDEAKAKIAI 313
Query: 322 KLAECNARLQDGASEYIQILDLGSIVIKANKT 353
++A + L DG+ E +Q+L + S+ ++ KT
Sbjct: 314 QVATSDKNLIDGSDETLQLLTVCSLALQCMKT 345
>gi|385304250|gb|EIF48275.1| activator 1 41 kda subunit [Dekkera bruxellensis AWRI1499]
Length = 380
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 158/351 (45%), Positives = 217/351 (61%), Gaps = 41/351 (11%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +D+V Q+ V +LKK L A+LPH LFYGPPGTGKTST++A QL+G
Sbjct: 21 MPWVEKYRPKNLDEVSSQKTTVQILKKNLETANLPHMLFYGPPGTGKTSTILAMAKQLYG 80
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADS 148
+++ R+LELNASD+RGI ++R+++K FA+ T S Q+ K PCPP+K++ILDEADS
Sbjct: 81 PRLFKTRVLELNASDERGISIVRERIKGFARLTVSRPXQEDKANYPCPPYKMIILDEADS 140
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L E + LTRL+YI
Sbjct: 141 MTGDAQSALRRTMETYSGITRFCLICNYVTRIIDPLASRCSKFRFKSLDEGSALTRLEYI 200
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL----------KGGEGIV------ 252
C +ES+ D L+ ++ S GD+RRAI LQS +RL K + V
Sbjct: 201 CGKESIDVDTNILKEILRISEGDLRRAINYLQSVSRLLSTDSDEHSAKDADNDVEMLDAG 260
Query: 253 -------NEDVLEVTGVIP----NPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQF 301
E V E+ G +P + ++ L K + ++ E + + E Y+ + L +
Sbjct: 261 PDSRQSKREQVREMFGFMPLGTLSEFVGLLEKKNLNKIFEFIFDKISKEGYNGSILIESL 320
Query: 302 HDIVMSASS----------LSDKQKALILEKLAECNARLQDGASEYIQILD 342
HD ++ S+ LS+ QK I + L + + RL +G E IQIL+
Sbjct: 321 HDKLLLGSTSDEETDLSLRLSNNQKNAISKVLFDTDCRLTEGCDEGIQILN 371
>gi|170577995|ref|XP_001894218.1| replication factor C, 37kDa subunit [Brugia malayi]
gi|158599258|gb|EDP36928.1| replication factor C, 37kDa subunit, putative [Brugia malayi]
Length = 315
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 144/333 (43%), Positives = 212/333 (63%), Gaps = 38/333 (11%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T + +PWVEKYRP+ +++V Q EVVSVLKK L GADLP+ LFYGPPGTGKTS IA C
Sbjct: 16 TTSMEIPWVEKYRPRKVEEVAFQNEVVSVLKKVLQGADLPNLLFYGPPGTGKTSAAIALC 75
Query: 88 HQLF--GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
QLF D YR+R++E+NASD+RGI ++R+K+K FA++ S DG P K++ILDE
Sbjct: 76 RQLFRNTDTYRDRVMEMNASDERGINIVRNKIKEFARRAVSSHLPDGSPVVGLKVIILDE 135
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AQAALRRTME+E+++TRF LICNY++ II PLTSRC+KFRFK ++ + RL
Sbjct: 136 ADAMTTPAQAALRRTMERESRTTRFFLICNYITRIIDPLTSRCAKFRFKSISSESQEKRL 195
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPN 265
++IC+ E++ D A+ L+E GDMR+++T LQ+ + + ++ DV + G +P+
Sbjct: 196 KWICQNENIEFDPLAISELIELCDGDMRKSVTALQTISSCH--KKLIPADVRQFLGAVPD 253
Query: 266 PWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
+++ + + + L IE++ E Y
Sbjct: 254 DVVQQFVASCRSRNHNQLYACIENIRREGY------------------------------ 283
Query: 323 LAECNARLQDGASEYIQILDLGSIVIKANKTAV 355
EC R+ DGA+E++Q+LD G++V++ KT++
Sbjct: 284 -GECEMRILDGANEFLQLLDFGTVVMEQFKTSL 315
>gi|241957153|ref|XP_002421296.1| replication factor C subunit, putative [Candida dubliniensis CD36]
gi|223644640|emb|CAX40630.1| replication factor C subunit, putative [Candida dubliniensis CD36]
Length = 364
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 150/331 (45%), Positives = 215/331 (64%), Gaps = 21/331 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK++ DV Q+ + VL + + +LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKSLSDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI ++R+K+K FA+ T S ++ PCPP+KI+ILDEADSM
Sbjct: 86 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLANYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME TRF LICNY++ II P+TSRCSKFRFK L RL+YI
Sbjct: 146 TYDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIG 205
Query: 210 EQESVMCDF----KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-------E 258
+QE++ D + ++ L++ SGGD+R+AIT LQS A+L I + L E
Sbjct: 206 QQENLRFDKGQEDQVIQELLKISGGDLRKAITYLQSAAKLSETFDINDHQSLITIQSIRE 265
Query: 259 VTGVIPNPWIE---KLLKVDSFQV--LEKYI-EDLILEAYSATQLFDQFHDIVMSASSLS 312
G++P+ + +L+K S Q L KYI + +IL +SA L DQ HD ++ S++
Sbjct: 266 TAGILPDDILLELIQLMKQKSIQQTKLIKYIDQSIILSGWSAQILLDQLHDKLILDESIN 325
Query: 313 DKQKALILEKLAECNARLQDGASEYIQILDL 343
K I + + + +L +G E+IQ+L++
Sbjct: 326 SLSKNKISQIFFQSDRKLNNGTDEHIQLLNV 356
>gi|68471103|ref|XP_720328.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|77022536|ref|XP_888712.1| hypothetical protein CaO19_7035 [Candida albicans SC5314]
gi|46442191|gb|EAL01482.1| hypothetical protein CaO19.7035 [Candida albicans SC5314]
gi|76573525|dbj|BAE44609.1| hypothetical protein [Candida albicans]
gi|238883252|gb|EEQ46890.1| activator 1 41 kDa subunit [Candida albicans WO-1]
Length = 363
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 146/331 (44%), Positives = 215/331 (64%), Gaps = 21/331 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK+++DV Q+ + VL + + +LPH LFYGPPGTGKTST++A +L+G
Sbjct: 25 PWVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHMLFYGPPGTGKTSTILALAKELYGP 84
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI ++R+K+K FA+ T S ++ PCPP+KI+ILDEADSM
Sbjct: 85 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPTKEDLQNYPCPPYKIIILDEADSM 144
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME TRF LICNY++ II P+TSRCSKFRFK L RL+YI
Sbjct: 145 TNDAQSALRRTMENYAGITRFVLICNYITRIIDPITSRCSKFRFKLLNNENAQLRLKYIG 204
Query: 210 EQESVMC-----DFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL------- 257
+QE++ + + ++ L++ SGGD+R+AIT LQS A+L I + L
Sbjct: 205 QQENLRFESENNEHQVIQELLKISGGDLRKAITYLQSAAKLSETFDINHHQSLITIQSIR 264
Query: 258 EVTGVIPNPWIEKLLKVDSFQV----LEKYI-EDLILEAYSATQLFDQFHDIVMSASSLS 312
E G++P+ + +L++ + L KYI + +IL +SA L DQ HD ++ S++
Sbjct: 265 ETAGILPDDILAELIQFIKSKTQQSRLIKYIDQSIILSGWSAQILLDQLHDKLILDESIN 324
Query: 313 DKQKALILEKLAECNARLQDGASEYIQILDL 343
K I + + + +L +G E+IQ+L++
Sbjct: 325 SLSKNKISQIFFQSDRKLNNGTDEHIQLLNV 355
>gi|67525023|ref|XP_660573.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
gi|40744364|gb|EAA63540.1| hypothetical protein AN2969.2 [Aspergillus nidulans FGSC A4]
Length = 754
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 152/344 (44%), Positives = 210/344 (61%), Gaps = 33/344 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA-DLPHFLFYGPPGTGKTSTMIAACHQLFG 92
PWVEKYRPKT+DDV Q + A LPH LFYGPPGTGKTST++A LFG
Sbjct: 401 PWVEKYRPKTLDDVAAQDHTTKTWARTNQAALQLPHMLFYGPPGTGKTSTILALAKSLFG 460
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGK-----PCPPFKIVILDE 145
+YR RILELNASD+RGI ++R+KVK FA+ Q + D + PCPPFKI+ILDE
Sbjct: 461 PALYRSRILELNASDERGIGIVREKVKGFARVQLSHPTGLDAEYFEKYPCPPFKIIILDE 520
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
ADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II+PL SRCSKFRFKPL + RL
Sbjct: 521 ADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAAGDRL 580
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL------------------KG 247
I + E + + ++ L+ S GD+RRAIT LQS ARL +G
Sbjct: 581 AQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSAARLVGAAKAAKDGDEDEEMKDQG 640
Query: 248 GEGIVNEDVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQ 300
+ I + E+ GV+P ++ L++ ++ + K + +++ + +SATQ+ Q
Sbjct: 641 SDMITVSTIEEIAGVVPESVLDGLIQSLQPKRMGSPYEAVSKVVTEIVADGWSATQILLQ 700
Query: 301 FHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
+ ++ ++ D QK I+ +E + RL DGA E++ ILD+
Sbjct: 701 LYRRMVYNDAIPDIQKNKIVLVFSEMDKRLVDGADEHLSILDVA 744
>gi|326475381|gb|EGD99390.1| DNA replication factor C subunit Rfc2 [Trichophyton tonsurans CBS
112818]
Length = 396
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 154/364 (42%), Positives = 220/364 (60%), Gaps = 42/364 (11%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD----------LPHFLF 71
V+ + ++ + PWVEKYRPKT+DDV Q +SVL++ L ++ LPH LF
Sbjct: 22 VTNNQESDQQAQPWVEKYRPKTLDDVTAQDHTISVLQRNLHASNVKLQYCLFKPLPHMLF 81
Query: 72 YGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130
YG PGTGKTST++A LFG + R R+LELNASD+RGI ++R+K+K FA+ S
Sbjct: 82 YGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQPPT 141
Query: 131 DGK-----PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
D PCPPFKI+ILDEADSMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II P+
Sbjct: 142 DPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIIDPVA 201
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
SRCSKFRFK L + +RL I E + + +ETL+ S GD+R+AIT +QS ARL
Sbjct: 202 SRCSKFRFKVLDGSAAQSRLIEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSSARL 261
Query: 246 -KGGEG------------------IVNEDVLEVTGVIPNPWIEKLL-------KVDSFQV 279
+ G G I + EV+G++P +++++ + ++
Sbjct: 262 ARYGSGKKKDSSDKEMELDDVKPKITVRSIEEVSGLVPETVMQRVVAALRPSKRASKYEE 321
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
+ + DL+ + +SA+Q+ Q + V+ S++D QK IL+ +E + RL DGA E++
Sbjct: 322 ISSLVADLVADGWSASQVLSQTYKAVLQDESIADVQKNQILKVCSEFDKRLVDGADEHLS 381
Query: 340 ILDL 343
LD
Sbjct: 382 TLDF 385
>gi|238576141|ref|XP_002387929.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
gi|215448797|gb|EEB88859.1| hypothetical protein MPER_13118 [Moniliophthora perniciosa FA553]
Length = 360
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 152/340 (44%), Positives = 205/340 (60%), Gaps = 33/340 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVE +RPKTIDDV QQ V+VL+K L+ +LPH LFYGPPGTGKTST++A QLFG
Sbjct: 12 PWVETHRPKTIDDVSAQQHTVAVLQKALTSTNLPHMLFYGPPGTGKTSTILALARQLFGP 71
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT--ASGFNQDGK--PCPPFKIVILDEADS 148
D +R R+LELNASD+RGI ++R+K+K FA+QT A + DGK PCPP+KI+ILDEADS
Sbjct: 72 DNFRSRVLELNASDERGISIVREKIKNFARQTPRAKTVSSDGKEYPCPPYKIIILDEADS 131
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRL 205
MT AQ ALRR ME + TRFCL+CNYV+ Q ++ C +FRF PL + + RL
Sbjct: 132 MTQDAQGALRRIMETYARITRFCLVCNYVTR--QNHSTSCFAMLQFRFTPLDQTSSFNRL 189
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDVLEVTG 261
I E + D + + +L+ S GD+RRAIT LQ+ RL I+ D+ E+ G
Sbjct: 190 SQIAAAEHISIDDEVVNSLIVNSSGDLRRAITYLQTAHRLSASTDPPTPIIPRDIQEIAG 249
Query: 262 VIPNPWIEKLLKV-------------------DSFQVLEKYIEDLILEAYSATQLFDQFH 302
V+P+ I L+V +F + + ++ E YSATQ+ Q H
Sbjct: 250 VVPDAVINDFLRVLGIDVPESMEVDTTSQTKGANFDAIRNKVREICREGYSATQVLSQVH 309
Query: 303 DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
D+V+ +L + K+ AE + L DGA E + IL+
Sbjct: 310 DVVVLHPTLQAQHKSQCALIFAEADKALCDGADEELWILE 349
>gi|407416746|gb|EKF37786.1| replication factor C, subunit 2, putative [Trypanosoma cruzi
marinkellei]
Length = 445
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 155/345 (44%), Positives = 215/345 (62%), Gaps = 17/345 (4%)
Query: 18 SKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYGP 74
+ TSVS + KP PWVEKYRP T+++V Q+E VS L+ L S A +PHFLF+GP
Sbjct: 100 ASTSVSKKPRIEPKPNATPWVEKYRPMTLNEVKSQEEAVSALRASLQSSASMPHFLFHGP 159
Query: 75 PGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG-----F 128
PGTGKT+ ++A +LFG D R+ E+NASDDRGIQVIR+KVK FA QTA G
Sbjct: 160 PGTGKTTAILAVARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFA-QTAVGNVGHKV 218
Query: 129 NQDGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
DG+ P P FK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+ S
Sbjct: 219 QSDGQVYPVPQFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIAS 278
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RC+K+RFKPL + R++ I + E + +LE L SGGD+R AI LQ +
Sbjct: 279 RCAKYRFKPLVREALYDRIREIAKMEKLTVSDASLEALDRVSGGDLRSAIMYLQYAQKAH 338
Query: 247 GGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHD 303
G + + E+ LEV+G +P +EK LK F + ++L+ + + A+QL Q
Sbjct: 339 GSD-LTKENFLEVSGSVPMELLEKYLKALVTKDFDGMYSLTKELVGQGFPASQLLSQLQQ 397
Query: 304 IVMSAS-SLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
++S S L+ +++ I KL + RL DG E++Q+LDLG+ +
Sbjct: 398 YIISLSCPLNSLERSRIALKLCDVERRLSDGGDEFLQLLDLGTTI 442
>gi|255944955|ref|XP_002563245.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211587980|emb|CAP86049.1| Pc20g07200 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 388
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 152/341 (44%), Positives = 208/341 (60%), Gaps = 37/341 (10%)
Query: 40 RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRER 98
RPK++DDV Q +VL++ L ++LPH LFYGPPGTGKTST++A LFG +YR R
Sbjct: 37 RPKSLDDVAAQDHTTNVLQRTLQASNLPHMLFYGPPGTGKTSTILALAKSLFGPALYRSR 96
Query: 99 ILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQDGK---PCPPFKIVILDEADSMTHA 152
ILELNASD+RGI ++RDKVK FA+ S G + + PCPPFKI+ILDEADSMT
Sbjct: 97 ILELNASDERGIGIVRDKVKNFARAQLSQPTGLDAAYRAQYPCPPFKIIILDEADSMTQD 156
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTME ++ TRFCL+CNYV+ II+PL SRCSKFRFK L + R+ I EQE
Sbjct: 157 AQSALRRTMETYSRITRFCLVCNYVTRIIEPLASRCSKFRFKMLDNSAAGERIGNIAEQE 216
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG---------------------- 250
+ + ++TL+ GD+RRAIT LQS ARL G
Sbjct: 217 GLQLEDGVIDTLIRCGDGDLRRAITYLQSAARLVGATKPPAAKDADDDDTEMTDVGSKSS 276
Query: 251 -IVNEDVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFH 302
I + E+ GV+P+ ++ L++ ++ + I DL+ + +SATQL Q +
Sbjct: 277 VITVRSIEEIAGVLPDNILDSLVEAMQPKSGGSVYEAVAGVITDLVADGWSATQLVGQLY 336
Query: 303 DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
V+S ++ D QK I+ +E + RL DG+ E++ +LDL
Sbjct: 337 RRVVSNEAIPDIQKNKIVMIFSEMDKRLVDGSDEHLSMLDL 377
>gi|396471841|ref|XP_003838965.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
gi|312215534|emb|CBX95486.1| hypothetical protein LEMA_P026380.1 [Leptosphaeria maculans JN3]
Length = 434
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 157/401 (39%), Positives = 214/401 (53%), Gaps = 80/401 (19%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
TS + N+ PWVEKYRPKT+ +V Q + +L + L ++LPH LFYGPPGTGKTST+
Sbjct: 24 TSKQESNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTI 83
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---------------TASG 127
+A QL+G D+ + R+LELNASD+RGI ++R KVK FA+Q A+G
Sbjct: 84 LALAKQLYGPDLLKSRVLELNASDERGISIVRQKVKDFARQQLSLAPSYSVMVEDKAAAG 143
Query: 128 FNQDGK---------------PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
+D PCPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL
Sbjct: 144 RGEDEAAGTGEKKMARYRDVYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRVTRFCL 203
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
+CNYV+ II PL SRCSKFRFK L + + R+ I E V D E LV + GD+
Sbjct: 204 VCNYVTRIIDPLASRCSKFRFKSLDQGNAVRRVADIARLEGVALDPGVAEELVRVAEGDL 263
Query: 233 RRAITCLQSCARLKG----------------------------------------GEGIV 252
R+AIT LQS ARL G G +
Sbjct: 264 RKAITFLQSGARLVGAVQANVAAGTGRKKRVVEEGEGEGDEMDIDAPAAAAPSTAGTTVS 323
Query: 253 NEDVLEVTGVIPNPWIEKLL---------KVDSFQVLEKYIEDLILEAYSATQLFDQFHD 303
+ + E+ GVIP + L+ K + + K +ED++ E +SATQ Q ++
Sbjct: 324 LQAIAEIAGVIPPETLAGLMDALFPKSKAKAIRYNEIAKVVEDMVAEGWSATQTVSQLYE 383
Query: 304 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
+M + D +K + +E + RL DG E++ +LDLG
Sbjct: 384 KIMYDERVEDVKKVRLAGVFSETDKRLVDGGDEHLAVLDLG 424
>gi|407851932|gb|EKG05623.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 154/343 (44%), Positives = 213/343 (62%), Gaps = 17/343 (4%)
Query: 20 TSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYGPPG 76
TSVS + KP PWVEKYRP T+ +V Q+E V L+ L S A +PHFLF+GPPG
Sbjct: 4 TSVSKKPRIEPKPNATPWVEKYRPMTLSEVKSQEEAVCALRASLQSSASMPHFLFHGPPG 63
Query: 77 TGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG-----FNQ 130
TGKT+ ++A +LFG D R+ E+NASDDRGIQVIR+KVK FAQ TA G
Sbjct: 64 TGKTTAILAVARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQ-TAVGNVGHKVQS 122
Query: 131 DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
DG+ P P FK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+ SRC
Sbjct: 123 DGQVYPVPQFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRC 182
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
+K+RFKPL T+ R++ I + E + +LE L SGGD+R AI LQ + G
Sbjct: 183 AKYRFKPLVRETLYDRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGS 242
Query: 249 EGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+ + E+ LEV+G +P +EK LK F + ++++ + + A+QL Q H +
Sbjct: 243 D-LTKENFLEVSGSVPMELLEKYLKALVSKEFDGMYSLTKEIVGQGFPASQLLSQLHQYI 301
Query: 306 MSAS-SLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
+ +S L+ ++ I KL + RL DG E++Q+LDLG+ +
Sbjct: 302 IGSSCPLNSLVRSRIALKLCDVERRLSDGGDEFLQLLDLGTTI 344
>gi|452825574|gb|EME32570.1| replication factor C [Galdieria sulphuraria]
Length = 354
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 144/330 (43%), Positives = 209/330 (63%), Gaps = 12/330 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP I D++ QQE +L CL+ +LPH LFYGPPGTGKTS +A C +LF
Sbjct: 9 LPWVEKYRPNKIKDLVYQQEAAQLLHNCLTSGNLPHCLFYGPPGTGKTSAALAFCKELFP 68
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y++R+LELNASD+RGI+V+R+K+K FAQ + S +G PCPPFKI+ILDEAD++T
Sbjct: 69 PEIYKDRVLELNASDERGIKVVREKIKRFAQGSVSSAQFEGFPCPPFKIIILDEADAITP 128
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME+ +K TRF L+CNYV+ +I PL SRC+KFRF+ L + RL+YI +Q
Sbjct: 129 DAQTALRRTMEQFSKITRFFLLCNYVTRVIDPLASRCAKFRFRSLPMQLQVDRLRYIVDQ 188
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E +M L+TL GD+RRAI L+S L G I +E + VT +P+ I ++
Sbjct: 189 EGIMVSDDILQTLTSCCNGDLRRAIMTLESAYCLARGSNITDEIINSVTWRVPDHVISQI 248
Query: 272 ----LKVDS-------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
LK+ S F L + I Y +++ Q + ++ + L+ QK++I+
Sbjct: 249 DSNCLKICSSGENTLQFSELRNMAIEFINNGYPVSEIIYQLCEALIPVNHLNKLQKSVIM 308
Query: 321 EKLAECNARLQDGASEYIQILDLGSIVIKA 350
K A+ L DG+ E + ++D+ ++ +
Sbjct: 309 IKFAQAEKMLIDGSDELLVLMDIFGVLFQV 338
>gi|71654128|ref|XP_815689.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70880763|gb|EAN93838.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 154/342 (45%), Positives = 213/342 (62%), Gaps = 17/342 (4%)
Query: 21 SVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYGPPGT 77
SV+ + +KP PWVEKYRP T+ +V Q+E V L+ L S A +PHFLF+GPPGT
Sbjct: 5 SVAKKPRIESKPNATPWVEKYRPMTLSEVKSQEEAVCALRASLQSSASMPHFLFHGPPGT 64
Query: 78 GKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG-----FNQD 131
GKT+ ++A +LFG D R+ E+NASDDRGIQVIR+KVK FAQ TA G D
Sbjct: 65 GKTTAILAVARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQ-TAVGNVGHKVQSD 123
Query: 132 GK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
G+ P P FK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+ SRC+
Sbjct: 124 GQVYPVPQFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRCA 183
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
K+RFKPL T+ R++ I + E + +LE L SGGD+R AI LQ + G +
Sbjct: 184 KYRFKPLVRETLYDRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGSD 243
Query: 250 GIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHD-IV 305
+ E+ LEV+G +P +EK LK F + ++++ + + A+QL Q H IV
Sbjct: 244 -LTKENFLEVSGSVPMELLEKYLKALVTKDFDGMYSLTKEIVGQGFPASQLLSQLHQYIV 302
Query: 306 MSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
S+ L+ ++ I KL + RL DG E++Q+LDLG+ +
Sbjct: 303 GSSCPLNSLVRSRIALKLCDVERRLSDGGDEFLQLLDLGTTI 344
>gi|302830262|ref|XP_002946697.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
gi|300267741|gb|EFJ51923.1| DNA replication factor C complex subunit 4 [Volvox carteri f.
nagariensis]
Length = 328
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 156/322 (48%), Positives = 208/322 (64%), Gaps = 7/322 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +++V Q+EVV+ L + L A+LPH LFYGPPGTGKTST +A QL+G
Sbjct: 5 PWVEKYRPKNVNEVAYQEEVVNTLTRALETANLPHLLFYGPPGTGKTSTALAIARQLYGP 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R++ELNASD+RGI V+R+KVK+FA PCPP+K++ILDEADSMT
Sbjct: 65 ELMKSRVMELNASDERGIHVVREKVKSFAAAAVGAPVPG-YPCPPYKLLILDEADSMTQD 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTME ++ TRF ICNYVS II+PL SRC+KFRFKPL M R+++ICE+E
Sbjct: 124 AQSALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQPTVMAGRIEHICERE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
V ALE L SGGD+RRAIT LQS ARL GG + +L+V+G +P I L
Sbjct: 184 GVTLAPGALEALSSVSGGDLRRAITTLQSAARLGGGT-VDKATLLDVSGRVPADVITGLC 242
Query: 273 KV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
+F L++ + ++ E ++A Q+ Q ++S + A LE LA +
Sbjct: 243 NSCKAPGAFAGLQRQVAGVVSEGFAAQQVLQQLQLELLSDRGTPGLKLADALEALAAADF 302
Query: 329 RLQDGASEYIQILDLGSIVIKA 350
L GA E IQ+L++ V KA
Sbjct: 303 SLTVGADETIQLLNVVGQVHKA 324
>gi|71408237|ref|XP_806535.1| replication factor C, subunit 2 [Trypanosoma cruzi strain CL
Brener]
gi|70870309|gb|EAN84684.1| replication factor C, subunit 2, putative [Trypanosoma cruzi]
Length = 347
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 152/343 (44%), Positives = 212/343 (61%), Gaps = 17/343 (4%)
Query: 20 TSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-GADLPHFLFYGPPG 76
TSV+ + KP PWVEKYRP T+ +V Q+E V L+ L A +PHFLF+GPPG
Sbjct: 4 TSVAKKPRIEPKPNATPWVEKYRPMTLSEVKSQEEAVCALRASLQPSASMPHFLFHGPPG 63
Query: 77 TGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG-----FNQ 130
TGKT+ ++A +LFG D R+ E+NASDDRGIQVIR+KVK FAQ TA G
Sbjct: 64 TGKTTAILAVARELFGPDYVHSRVREMNASDDRGIQVIREKVKVFAQ-TAVGSVGHKVQS 122
Query: 131 DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
DG+ P P FK++ILDEAD++ AQAALRR ME + TRFC++CNYVS II P+ SRC
Sbjct: 123 DGQVYPVPQFKLIILDEADALLPDAQAALRRMMEDFSDVTRFCILCNYVSRIIDPIASRC 182
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
+K+RFKPL T+ R++ I + E + +LE L SGGD+R AI LQ + G
Sbjct: 183 AKYRFKPLVRETLYDRIREIAKMEEITVSDASLEALDRVSGGDLRSAIMYLQYAQKAHGS 242
Query: 249 EGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
+ + E+ LEV+G +P +EK LK F + ++++ + + A+QL Q H +
Sbjct: 243 D-LTKENFLEVSGSVPMELLEKYLKALVTKDFDGMYSLTKEIVGQGFPASQLLSQLHQYI 301
Query: 306 MSAS-SLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
+ +S L+ ++ I KL + RL DG E++Q+LDLG+ +
Sbjct: 302 IGSSCPLNSLVRSRIALKLCDVERRLSDGGDEFLQLLDLGTTI 344
>gi|255731300|ref|XP_002550574.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
gi|240131583|gb|EER31142.1| activator 1 41 kDa subunit [Candida tropicalis MYA-3404]
Length = 354
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 142/325 (43%), Positives = 211/325 (64%), Gaps = 15/325 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK++ D+ Q+ V VL + ++ +LPH LFYGPPGTGKTST++A L+G
Sbjct: 22 PWVEKYRPKSLSDISSQEHTVKVLTQTITSGNLPHMLFYGPPGTGKTSTILALAKTLYGP 81
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADSM 149
++Y+ R+LELNASD+RGI ++R+K+K FA+ T S +++ PCPP+KI+ILDEADSM
Sbjct: 82 NLYKSRVLELNASDERGISIVREKIKNFARLTISNPSKEDLEKYPCPPYKIIILDEADSM 141
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ+ALRRTME TRF LICNY++ II PLTSRCSKFRFK L L RL++I
Sbjct: 142 TNDAQSALRRTMETYAGITRFVLICNYITRIIDPLTSRCSKFRFKLLNNENALLRLRFIA 201
Query: 210 EQESV-MCDFKALETLVETSGGDMRRAITCLQSCARLKG------GEGIVN-EDVLEVTG 261
+E++ L +++ S GD+R+ IT LQS A+L +GI+ + + E G
Sbjct: 202 NEENLRYTGDDVLNEVLKISAGDLRKGITYLQSAAKLSSTFDDNDDKGIITVKTIRETAG 261
Query: 262 VIPNPWIEKLLKVDSFQVLEKYIE---DLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
++ + + +L+ + + ++K I+ ++ L +SA L DQ HDI++ L K
Sbjct: 262 ILHDDVLNELIDIMKSKNVQKIIQAVNEIELNGWSAQILLDQLHDILILDDRLDSLAKNK 321
Query: 319 ILEKLAECNARLQDGASEYIQILDL 343
I + E + +L +G E+IQ+L++
Sbjct: 322 IAKFFFESDRKLNNGTDEHIQLLNI 346
>gi|154324182|ref|XP_001561405.1| hypothetical protein BC1G_00490 [Botryotinia fuckeliana B05.10]
Length = 344
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/329 (44%), Positives = 205/329 (62%), Gaps = 29/329 (8%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M +F +A S+ + K N+ PWVEKYRPK + DV Q ++VL++
Sbjct: 1 MASFFDIKARKAEAASNGTVNAKEEAKKNNRMQPWVEKYRPKGLGDVTAQDHTITVLQRT 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L ++LPH LFYGPPGTGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK
Sbjct: 61 LQSSNLPHMLFYGPPGTGKTSTVLALAKELYGPELMKSRVLELNASDERGISIVREKVKD 120
Query: 120 FAQQTASGFN---QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
FA+ S + + PCPP+KI+ILDEADSMT AQ+ALRRTME ++ TRFCLICNY
Sbjct: 121 FARMQLSNPSPAYRQKYPCPPYKIIILDEADSMTQDAQSALRRTMETYSRITRFCLICNY 180
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
V+ II PL SRCSKFRFK L + + R++ I ++E V + A+E L++ S GD+R+AI
Sbjct: 181 VTRIIDPLASRCSKFRFKSLDKGNAVVRVREIADKEGVRLEEGAVEALIKCSEGDLRKAI 240
Query: 237 TCLQSCARLKG-----GEGIVNEDVLEV-------------TGVIPNPWIEKLLKVDS-- 276
T LQS ARL G GE N D ++V GVIP+ IEKL+K
Sbjct: 241 TYLQSAARLVGAVSQEGEERDNADKMDVDEKMVTVSSVEDIAGVIPDNTIEKLVKAMQPR 300
Query: 277 -----FQVLEKYIEDLILEAYSATQLFDQ 300
++ + K + D++ + +S TQ+ Q
Sbjct: 301 SRGVVYEAVSKVVVDMVADGWSGTQVVSQ 329
>gi|451849989|gb|EMD63292.1| hypothetical protein COCSADRAFT_38154 [Cochliobolus sativus ND90Pr]
Length = 416
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/384 (40%), Positives = 217/384 (56%), Gaps = 63/384 (16%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T+ + N+ PWVEKYRPKT+ +V Q + VL + + ++LPH LFYGPPGTGKTST+
Sbjct: 24 TTKQEPNRLQPWVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTI 83
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN---------- 129
+A +L+G ++ + R+LELNASD+RGI ++R KVK FA+Q A +N
Sbjct: 84 LALAKELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTG 143
Query: 130 -------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
+D PCPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II
Sbjct: 144 EGGMVRYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIID 203
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
PL SRCSKFRFK L + + R+ I E+V D E LV + GD+R+AIT LQS
Sbjct: 204 PLASRCSKFRFKSLDQGNAVKRVSDIAALENVRLDDGVAEELVRVADGDLRKAITFLQSA 263
Query: 243 ARL------KGGEG-------IVNED-------------------VLEVTGVIP----NP 266
ARL +GG V ED + E+ GV+P +
Sbjct: 264 ARLVGALQSQGGSNKKGKKRTAVPEDDEMDIDSSNTATPSVSLPTIAEIAGVLPPDTLST 323
Query: 267 WIEKLLKVDS------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
+ L S + + K +E+++ E +SA Q Q ++ +M + D +K +
Sbjct: 324 FTSALFPKSSAQKSIRYNEIAKVVENMVAEGWSAAQTVGQLYEQIMFDERVEDVKKVRLA 383
Query: 321 EKLAECNARLQDGASEYIQILDLG 344
+E + RL DG+ E++ +LDLG
Sbjct: 384 AVFSETDKRLVDGSDEHLAVLDLG 407
>gi|312075109|ref|XP_003140271.1| replication factor C [Loa loa]
gi|307764567|gb|EFO23801.1| replication factor C [Loa loa]
Length = 308
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 138/289 (47%), Positives = 195/289 (67%), Gaps = 7/289 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF- 91
+PWVEKYRP+ +++V Q EVVSVLKK L GADLP+ LFYGPPGTGKTS IA C QLF
Sbjct: 21 IPWVEKYRPRKVEEVAFQNEVVSVLKKVLEGADLPNLLFYGPPGTGKTSAAIALCRQLFR 80
Query: 92 -GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+ Y +R++E+NASD+RGI ++R+K+K FA++ S DG P K++ILDEAD+MT
Sbjct: 81 NTETYHDRVMEMNASDERGINIVRNKIKEFARRAVSSHLPDGSPVVGLKVIILDEADAMT 140
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQAALRRTMEKE+++TRF LICNY++ II PLTSRC+KFRFK ++ + RL++IC+
Sbjct: 141 TPAQAALRRTMEKESRTTRFFLICNYITRIIDPLTSRCAKFRFKSISSESQGKRLEWICQ 200
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
E++ D A++ L+E GDMR+++T LQ+ + + ++ DV + G IP+ +E+
Sbjct: 201 NENIEFDPLAIDELIELCDGDMRKSVTALQTISSCH--KKLLPSDVRQFLGAIPDDVVER 258
Query: 271 LL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 316
L + + L +E + E Y QL QF I + L+D +K
Sbjct: 259 FLTACRSCNHDQLYACVESIRREGYGVYQLLKQFFYICLHLEDLTDLKK 307
>gi|254568858|ref|XP_002491539.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|238031336|emb|CAY69259.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328351952|emb|CCA38351.1| Replication factor C subunit 2 [Komagataella pastoris CBS 7435]
Length = 324
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 138/318 (43%), Positives = 206/318 (64%), Gaps = 13/318 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+ VL L A++PH LFYGPPGTGKTST++A +LFG
Sbjct: 4 PWVEKYRPKKLDEVSAQSNVIRVLSNQLKSANMPHLLFYGPPGTGKTSTILAMARELFGP 63
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
+ + R+LELNASD+RGI ++RDKVK FA+ + + + K PCPP+K++ILDEADSM
Sbjct: 64 QLMKSRVLELNASDERGISIVRDKVKNFARLSVTNPTPEDKENYPCPPYKLIILDEADSM 123
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRR ME + TRFC+ICNY++ II P+TSRCSKFRF PL L L+ I
Sbjct: 124 TFDAQSALRRIMENYSHITRFCIICNYITRIIDPITSRCSKFRFSPLNSANSLATLKMIS 183
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIE 269
+ E + D +L +++ S GD+R++I LQ+ +L G + I N + G+IP ++
Sbjct: 184 QSEELDIDDDSLTQILDISNGDLRKSINFLQTGHKLFGEDSIEN-----IAGLIPQNLVQ 238
Query: 270 KLLKVDSFQVLEK---YIEDLILEAYSATQLFDQFHD-IVMSASSLSDKQKALILEKLAE 325
L++ + L K ++ L+L++Y++ + H +++ L+ +QK + L E
Sbjct: 239 SLIETLQSKNLNKIYEFLYMLVLKSYNSATILTSLHSCLLLKNIYLNSEQKIEVSRILYE 298
Query: 326 CNARLQDGASEYIQILDL 343
+++L G+ E+IQ+L+L
Sbjct: 299 TDSKLSSGSDEFIQMLNL 316
>gi|189203731|ref|XP_001938201.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985300|gb|EDU50788.1| replication factor C subunit 4 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 417
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/385 (39%), Positives = 214/385 (55%), Gaps = 64/385 (16%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T+ + N+ PWVEKYRPKT+ +V Q + +L + + ++LPH LFYGPPGTGKTST+
Sbjct: 24 TTKQEPNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTI 83
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN---------- 129
+A +L+G ++ + R+LELNASD+RGI ++R KVK FA+Q A +N
Sbjct: 84 LALAKELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGE 143
Query: 130 ------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
+D PCPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II P
Sbjct: 144 TKTVRYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDP 203
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L + + R+ I + E+V + E LV + GD+R+AIT LQS A
Sbjct: 204 LASRCSKFRFKSLDQGNAIKRVSDIAKLENVSLEDGVAEELVRVADGDLRKAITFLQSAA 263
Query: 244 RLKGGEGIVN----------------ED------------------VLEVTGVIPNPWIE 269
RL G VN ED + E+ GV+P +
Sbjct: 264 RLVGAVQAVNGGGAGASKKGKKKVVEEDEMDVDAPPTSTPAISLPIIAEIAGVLPPATLS 323
Query: 270 KL----------LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
K + + K +E++I E +SA Q Q ++ +M + D +K +
Sbjct: 324 TFSDSLFPKSAAAKQIRYNEIAKIVENMIAEGWSAQQTVGQLYEQIMFDERVEDVKKVRL 383
Query: 320 LEKLAECNARLQDGASEYIQILDLG 344
+E + RL DG E++ +LDLG
Sbjct: 384 AGVFSETDKRLVDGGDEHLAVLDLG 408
>gi|209877196|ref|XP_002140040.1| replication factor C, subunit 4 [Cryptosporidium muris RN66]
gi|209555646|gb|EEA05691.1| replication factor C, subunit 4, putative [Cryptosporidium muris
RN66]
Length = 335
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 140/319 (43%), Positives = 206/319 (64%), Gaps = 8/319 (2%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
WVEKYRP+ I D+ Q EVV +LK L ++PH LFYGPPGTGKTS ++A C +LFG D
Sbjct: 10 WVEKYRPRQIADIYHQTEVVKMLKNVLEFGNMPHLLFYGPPGTGKTSAILALCRELFGND 69
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD---GKPCPPFKIVILDEADSMT 150
+R R LELNASD+RGI V+R+K+KT+ +Q + G+ PP+K+VILDEA+ MT
Sbjct: 70 EFRNRTLELNASDERGINVVREKIKTWTRQVVYSNKINPITGRKIPPWKVVILDEAEMMT 129
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ+ALRR +E K+TRF +ICNY++ II+PL SRC+KFRF+P++ RL +IC+
Sbjct: 130 SDAQSALRRIIETSAKNTRFVIICNYINKIIEPLASRCAKFRFQPISFKAQRERLNFICQ 189
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPNPWIE 269
QE+++C+ + + LV+ S GD+RRAIT LQS L E IV V+EV G+ P E
Sbjct: 190 QENIICEPEVFDILVDLSQGDLRRAITILQSTCELYSEEEIVKATSVIEVAGIPPLSVAE 249
Query: 270 KLLKVDSFQVLEKYIE---DLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
++ + ++ ++ D I E + + Q ++ L D +KA + +LAE
Sbjct: 250 GIMNFCFTKDIDSIVQKTTDTINEGWDVATIIRQLVLLITENKDLDDAKKAYLALRLAEA 309
Query: 327 NARLQDGASEYIQILDLGS 345
+A + DG++E++ +L++ S
Sbjct: 310 DACITDGSNEFLILLNICS 328
>gi|66360032|ref|XP_627194.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
gi|46228833|gb|EAK89703.1| replication factor C like AAA ATpase [Cryptosporidium parvum Iowa
II]
Length = 335
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 139/321 (43%), Positives = 208/321 (64%), Gaps = 8/321 (2%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
WVEKYRP + D+ ++VVS+L L ++PH LF+GPPGTGKTS ++A +LFG +
Sbjct: 9 WVEKYRPGNVLDISHHKDVVSMLSHVLKNGNMPHLLFHGPPGTGKTSAVLALSRELFGPN 68
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQDGKPCPPFKIVILDEADSMT 150
Y+ RILELNASD+RGI V+RDK+K++ +Q G P +KIVILDEA+ MT
Sbjct: 69 EYKNRILELNASDERGISVVRDKIKSWTRQVVQCNKTHEITGNLLPSWKIVILDEAEMMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ+ALRR +E +K+TRF +ICNY+S II+PL SRC+KFRF+P++ N+ + RL+YIC
Sbjct: 129 ADAQSALRRIIEVSSKNTRFVIICNYISKIIEPLASRCAKFRFQPISANSQIERLKYICS 188
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG-IVNEDVLEVTGVIPNPWIE 269
QE V + LET+V S GD+RR I LQS + L G + I +L+V+GV P IE
Sbjct: 189 QEDVSYEDGVLETIVNLSQGDLRRGINILQSASELFGKDKRISMSSILDVSGVPPIKIIE 248
Query: 270 KLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
+++ K+ + + LI E +S +F + ++ + D +KA ++ +++E
Sbjct: 249 RIINSCKILGVESILIETAKLINEGWSVELIFKGLAEFIIMCDKIDDSKKAFLMLRISEA 308
Query: 327 NARLQDGASEYIQILDLGSIV 347
+A + DG++EY+ +L++ S V
Sbjct: 309 DASVIDGSNEYLTLLNVCSSV 329
>gi|452001809|gb|EMD94268.1| hypothetical protein COCHEDRAFT_1028190 [Cochliobolus heterostrophus
C5]
Length = 1071
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 154/385 (40%), Positives = 217/385 (56%), Gaps = 64/385 (16%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T+ + N+ PWVEKYRPKT+ +V Q + VL + + ++LPH LFYGPPGTGKTST+
Sbjct: 678 TTKQEPNRLQPWVEKYRPKTLSEVTAQDNTIQVLSRTMQSSNLPHMLFYGPPGTGKTSTI 737
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN---------- 129
+A +L+G ++ + R+LELNASD+RGI ++R KVK FA+Q A +N
Sbjct: 738 LALAKELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMVEDKSGTG 797
Query: 130 -------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
+D PCPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II
Sbjct: 798 EGGMVRYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIID 857
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
PL SRCSKFRFK L + + R+ I E+V D E LV + GD+R+AIT LQS
Sbjct: 858 PLASRCSKFRFKSLDQGNAVKRVSDIAALENVRLDDGVAEELVRVADGDLRKAITFLQSA 917
Query: 243 ARL------KGGEG-------IVNED--------------------VLEVTGVIP----N 265
ARL +GG V ED + E+ GV+P +
Sbjct: 918 ARLVGAIQSQGGSNKKGKKRTAVPEDDEMDIDSSNTATTPSVSLPTIAEIAGVLPPDTLS 977
Query: 266 PWIEKLLKVDS------FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
+ L S + + K +E+++ E +SA Q Q ++ +M + D +K +
Sbjct: 978 TFTSALFPKSSAQKSIRYHEIAKVVENMVAEGWSAAQTVGQLYEQLMFDERVEDVKKVRL 1037
Query: 320 LEKLAECNARLQDGASEYIQILDLG 344
+E + RL DG+ E++ +LDLG
Sbjct: 1038 AAVFSETDKRLVDGSDEHLAVLDLG 1062
>gi|70951019|ref|XP_744784.1| replication factor C, subunit 2 [Plasmodium chabaudi chabaudi]
gi|56524878|emb|CAH75042.1| replication factor C, subunit 2, putative [Plasmodium chabaudi
chabaudi]
Length = 330
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 136/322 (42%), Positives = 209/322 (64%), Gaps = 9/322 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q +S+LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 LPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
+ ER+LELNASDDRGI V+R+K+K + + + S N+ +P PP+K+V+LDEAD
Sbjct: 64 KENISERVLELNASDDRGITVVREKIKAYTRISISKNKINNETNEPLPPWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPLNIKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
C E++ AL ++ET+ GD+RRA++ LQ C+ + I E VL+++G+ N I
Sbjct: 184 CNNENINISDDALTKIIETTQGDLRRAVSVLQLCSCIDS--KITVESVLDISGLPDNDII 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
K++ KV F++LEK I+D+I + + + +F ++ + ++D K IL +L+
Sbjct: 242 LKIVDSCKVKDFKILEKTIQDIIEDGFDVSYIFKALNEYFVMCQDINDSIKYQILMELSR 301
Query: 326 CNARLQDGASEYIQILDLGSIV 347
+ RL +GA++YIQ++ S V
Sbjct: 302 HDFRLHNGATKYIQLMSFASSV 323
>gi|299472904|emb|CBN80473.1| EsV-1-182 , RFC small subunit [Ectocarpus siliculosus]
Length = 326
Score = 273 bits (699), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 145/328 (44%), Positives = 204/328 (62%), Gaps = 16/328 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ + DV+ + VLK DLPH LF+GPPGTGKTST++A L G+
Sbjct: 3 PWVEKYRPRRVKDVVHHDHLKRVLKGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLGE 62
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
RER+LELNASD+RG+ V+RDK+KTF + + S F Q G CPPFK+VILDEAD+MT
Sbjct: 63 ENMRERVLELNASDERGLDVVRDKIKTFCKMSISSF-QPG--CPPFKLVILDEADTMTAD 119
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTME + TRFCL+CNYVS II PL SRC+KFRF L +M RL YICE+E
Sbjct: 120 AQSALRRTMETQAVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLTPESMKGRLLYICERE 179
Query: 213 SVM---CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIE 269
+++ C L+ +V++S GDMR A+ LQ+ ++ + + E V+EV G +P +
Sbjct: 180 NIIFENCSRGVLDAIVKSSRGDMRSAVNLLQTVSQQQ--HRVTPESVVEVAGEVPERAFD 237
Query: 270 KLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
L ++ F+ + + + E Y ++ + V+ + L + KA+I +
Sbjct: 238 TLWSAVTSPSHLEHFEDVVDAVSTFVGEGYPVGKVLSEIQSRVVQSGELENADKAVICLE 297
Query: 323 LAECNARLQDGASEYIQILDLGSIVIKA 350
L E + L DGA E +Q+L++ +V A
Sbjct: 298 LMETDRCLNDGADEELQLLNICLVVQSA 325
>gi|330921788|ref|XP_003299563.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
gi|311326698|gb|EFQ92339.1| hypothetical protein PTT_10587 [Pyrenophora teres f. teres 0-1]
Length = 418
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 150/386 (38%), Positives = 214/386 (55%), Gaps = 65/386 (16%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T+ + N+ PWVEKYRPKT+ +V Q + +L + + ++LPH LFYGPPGTGKTST+
Sbjct: 24 TTKQEPNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTMQSSNLPHMLFYGPPGTGKTSTI 83
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN---------- 129
+A +L+G ++ + R+LELNASD+RGI ++R KVK FA+Q A +N
Sbjct: 84 LALAKELYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPNYNIMVEDKSSGE 143
Query: 130 ------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
+D PCPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II P
Sbjct: 144 AKTVRYRDKYPCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDP 203
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L + + R+ I + E+V + E LV + GD+R+AIT LQS A
Sbjct: 204 LASRCSKFRFKSLDQGNAVKRVSDIAKLENVSLEDDVAEELVRVADGDLRKAITFLQSAA 263
Query: 244 RL-----------------KGGEGIVNED------------------VLEVTGVIPNPWI 268
RL + +V ED + E+ GV+P +
Sbjct: 264 RLVGAVQAANGGGAGASKKGKKKVVVEEDEMDVDAPPTSTPAISLPIIAEIAGVLPPATL 323
Query: 269 EKL----------LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
K + + K +E++I E +SA Q Q ++ +M + D +K
Sbjct: 324 STFSDSLFPKSASAKQIRYNEIAKIVENMIAEGWSAQQTVGQLYEQIMFDERIEDVKKVR 383
Query: 319 ILEKLAECNARLQDGASEYIQILDLG 344
+ +E + RL DG E++ +LDLG
Sbjct: 384 LAGVFSETDKRLVDGGDEHLAVLDLG 409
>gi|82539183|ref|XP_724000.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii
17XNL]
gi|23478491|gb|EAA15565.1| replication factor C, 40 kDa subunit [Plasmodium yoelii yoelii]
Length = 330
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 211/322 (65%), Gaps = 9/322 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q +S+LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 LPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
+ ER+LELNASDDRGI V+R+K+K + + + S +++ +P PP+K+V+LDEAD
Sbjct: 64 KENISERVLELNASDDRGINVVREKIKAYTRISISKNKINSENNEPLPPWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
C+ E++ AL ++ET+ GD+RRA++ LQ C+ + I + VL+V+G+ N I
Sbjct: 184 CKNENIDISDNALSKIIETTQGDLRRAVSVLQLCSCIDS--KITVDSVLDVSGLPDNDVI 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
K++ K+ F++LEK ++D+I + + + +F ++ + ++D K IL +L+
Sbjct: 242 LKIVDSCKMKDFKILEKTVQDIIEDGFDVSYIFKSLNEYFVMCQDINDSIKYQILMELSR 301
Query: 326 CNARLQDGASEYIQILDLGSIV 347
+ RL +GA++YIQ++ S V
Sbjct: 302 HDFRLHNGATKYIQLMSFASSV 323
>gi|328767253|gb|EGF77303.1| hypothetical protein BATDEDRAFT_91654 [Batrachochytrium
dendrobatidis JAM81]
Length = 326
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 136/312 (43%), Positives = 197/312 (63%), Gaps = 7/312 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PW E+YRPKT+ ++ Q EVV+VL + +LPH L YGPPGTGKTS ++A QL+G
Sbjct: 9 PWTERYRPKTLSEISGQNEVVAVLSNTIQTQNLPHLLLYGPPGTGKTSIILALARQLYGA 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ + R+LELNASD+RGI VIR+KVK FA+ T S + + PP+KI++LDEADS+T
Sbjct: 69 NGLKGRLLELNASDERGIDVIREKVKNFAKITVSAAHSNA---PPYKIIVLDEADSLTTD 125
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR ME +K TRFCLICNYVS II PL SRC+K RFKP+ ++ RL+ IC E
Sbjct: 126 AQSALRRIMENYSKITRFCLICNYVSRIIDPLASRCAKLRFKPIPMPIVIERLELICSNE 185
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+ AL+ L + GD+R+AIT LQS ++ G + V +++G+IP+ + ++
Sbjct: 186 KLSFAPGALDFLATSCAGDLRKAITLLQSIKKVSIGSTVTKSLVADISGIIPDSVMAGII 245
Query: 273 KVDS---FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ S + +E ++ I YS T Q +++ L ++ K+ + L + +
Sbjct: 246 QAWSSGKVENVEAELKQTIRMGYSGTAFIQQLSNLIAEDPHLKERHKSKVAVLLGQTDRA 305
Query: 330 LQDGASEYIQIL 341
L DGA E++QIL
Sbjct: 306 LVDGADEHLQIL 317
>gi|320580296|gb|EFW94519.1| replication factor C subunit 2 [Ogataea parapolymorpha DL-1]
Length = 334
Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 145/330 (43%), Positives = 203/330 (61%), Gaps = 32/330 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKY V VLK+ L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 8 MPWVEKY------------HAVQVLKRNLQTANLPHMLFYGPPGTGKTSTILAMAKELYG 55
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---KPCPPFKIVILDEADS 148
++R R+LELNASD+RGI ++RDK+K FA+ + S +++ PCPP+K++ILDEADS
Sbjct: 56 PHLFRSRVLELNASDERGISIVRDKIKNFARLSISNPSKEDLEKYPCPPYKLLILDEADS 115
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRRTME + TRFCLICNY++ II PL SRCSKFRFK L E + RLQYI
Sbjct: 116 MTSDAQSALRRTMETYSGITRFCLICNYITRIIDPLASRCSKFRFKMLDEENSIKRLQYI 175
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL------KGGEGIVNEDVLEVTGV 262
C +E+V L+ ++ S GD+R+AI LQS ++ + + + + + +V G
Sbjct: 176 CNEENVTASTPVLKEILRISDGDLRKAINFLQSVHKMLMPAEDEMADDVTEDQIRDVFGY 235
Query: 263 IPNPWIEKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS------SLS 312
+P + +L+++ D ++ E + + E Y+AT + HD+++ SL
Sbjct: 236 LPKDQLMELIRLAEKKDMDRIFEFVTDYISKEGYNATLIISSLHDVLLLGDDSGISLSLD 295
Query: 313 DKQKALILEKLAECNARLQDGASEYIQILD 342
KQK I L E +ARL G E IQILD
Sbjct: 296 GKQKNSISRILFETDARLSHGCDETIQILD 325
>gi|68070283|ref|XP_677053.1| replication factor C, subunit 2 [Plasmodium berghei strain ANKA]
gi|56497014|emb|CAH96737.1| replication factor C, subunit 2, putative [Plasmodium berghei]
Length = 330
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 134/322 (41%), Positives = 210/322 (65%), Gaps = 9/322 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q +S+LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 LPWVEKYRPKKLDDIVHQTNAISMLKEVIKTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
+ ER+LELNASDDRGI V+R+K+K + + + S + + PP+K+V+LDEAD
Sbjct: 64 KENINERVLELNASDDRGINVVREKIKAYTRISISKNKINTETNEQLPPWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
C+ E++ AL ++ET+ GD+RRA++ LQ CA + I + VL+V+G+ N I
Sbjct: 184 CKNENIDISDNALSKIIETTQGDLRRAVSVLQLCACIDS--KITVDSVLDVSGLPGNDVI 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
K++ K+ +F++LEK I+D+I + + + +F ++ + + ++D K IL +L+
Sbjct: 242 LKIVNSCKMKNFKILEKTIQDIIEDGFDVSYIFKALNEYFVMSQDINDSIKYQILMELSR 301
Query: 326 CNARLQDGASEYIQILDLGSIV 347
+ RL +GA++YIQ++ S V
Sbjct: 302 HDFRLHNGATKYIQLMSFASSV 323
>gi|13242652|ref|NP_077667.1| EsV-1-182 [Ectocarpus siliculosus virus 1]
gi|13177452|gb|AAK14596.1|AF204951_181 EsV-1-182 [Ectocarpus siliculosus virus 1]
Length = 326
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 141/326 (43%), Positives = 199/326 (61%), Gaps = 18/326 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ + DV+ + VL DLPH LF+GPPGTGKTST++A L G+
Sbjct: 3 PWVEKYRPRRVRDVVHHDHLKRVLNGAEKTGDLPHLLFHGPPGTGKTSTILALARTLLGE 62
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
RER+LELNASD+RG+ V+RDK+KTF++ + S F Q G CPPFK+VILDEAD+MT
Sbjct: 63 GNMRERVLELNASDERGLDVVRDKIKTFSKMSISSF-QPG--CPPFKLVILDEADTMTAD 119
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRRTME + TRFCL+CNYVS II PL SRC+KFRF LA +M RL +ICE+E
Sbjct: 120 AQSALRRTMETHSVVTRFCLVCNYVSKIIAPLASRCAKFRFSTLAPKSMKGRLLHICERE 179
Query: 213 SVM---CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIE 269
+++ C L+ +V++S GDMR A+ LQ+ ++ + E ++E+ G +P +
Sbjct: 180 NIIFENCSRSVLDAIVKSSRGDMRSAVNLLQTVSQ---QPRVTPESIVEIAGEVPERVFD 236
Query: 270 KLLKV--------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
L F+ + + + E Y ++ + V+ + + D KA I
Sbjct: 237 MLWSAVTSQPRQPGHFEAVTDAVSTFVGEGYPVGKVLSEIQGRVVHSGEIEDADKAAICL 296
Query: 322 KLAECNARLQDGASEYIQILDLGSIV 347
L E + L DGA E +Q+L++ +V
Sbjct: 297 SLMETDRCLNDGADEELQLLNICFVV 322
>gi|449523838|ref|XP_004168930.1| PREDICTED: replication factor C subunit 4-like [Cucumis sativus]
Length = 219
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 130/209 (62%), Positives = 153/209 (73%), Gaps = 2/209 (0%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK + DV Q EVV VL L A+ PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVKDVAHQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y+ R+LELNASDDRGI V+R K+K FA +SG Q G PCPPFKI+ILDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAGVAVSSGQRQGGYPCPPFKIIILDEADSMTE 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M R+ +I +
Sbjct: 130 DAQNALRRTMETHSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSKRILHIGNE 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQ 240
E + D +AL TL S GD+RRAIT LQ
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQ 218
>gi|225680958|gb|EEH19242.1| replication factor C subunit 4 [Paracoccidioides brasiliensis Pb03]
Length = 374
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 150/355 (42%), Positives = 212/355 (59%), Gaps = 37/355 (10%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S K S + TR +P WVEKYRPKT+DDV Q+ ++VL++ L ++LPH LFYGPP
Sbjct: 20 SKPKASEKEADNTRLQP--WVEKYRPKTLDDVASQEHTITVLQRTLQASNLPHMLFYGPP 77
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ---- 130
GTGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ S
Sbjct: 78 GTGKTSTILALSKSLFGPQLYRSRILELNASDERGISIVREKIKDFARMQLSHPPVSDTA 137
Query: 131 --DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
+ PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II PL SRC
Sbjct: 138 YCEKYPCPPFKIIILDEADSMTQDAQSALRRTMERYSRITRFCLVCNYVTRIIDPLASRC 197
Query: 189 SKFRFKPLAENTMLTRLQYICEQESV-MCD----------FKALETLVETSGGDMRRAIT 237
SKFRFK L + +RL+ I E + + D + + GGD A
Sbjct: 198 SKFRFKALDGSAAGSRLEEIARVEKLRLADGVRPGWWGSGLVSKPPPGKDEGGDEDMADA 257
Query: 238 CLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLLKVDS-------FQVLEKYIEDLIL 289
G EG++ + E+ GV+P+ + +L+K ++ + K + D++
Sbjct: 258 ---------GDEGVITVRTIEEIAGVVPDDIVNRLVKALQPKKARLPYEEVSKVVTDIVA 308
Query: 290 EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
+ +SA+Q+ Q + I++ S+ D K I+ +E + RL DGA E++ ILDL
Sbjct: 309 DGWSASQMLTQLYQIIVFDDSIEDIHKNSIVMVFSEFDKRLIDGADEHLTILDLA 363
>gi|342181603|emb|CCC91083.1| putative replication factor C, subunit 2 [Trypanosoma congolense
IL3000]
Length = 347
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 149/345 (43%), Positives = 212/345 (61%), Gaps = 17/345 (4%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYG 73
P K V +G R PWVEKYRPK++D+V Q+EVV L+ L GA +PHFLF+G
Sbjct: 5 PPLKKQRVEPNGDAR----PWVEKYRPKSLDEVKSQEEVVQALRSTLLQGASMPHFLFHG 60
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-- 130
PPGTGKT+ ++A H++FG D + R+ ELNASDDRGIQVIR+KVK+FAQ Q
Sbjct: 61 PPGTGKTTAILAVAHEMFGPDYIKSRVRELNASDDRGIQVIREKVKSFAQAAVGTVQQKV 120
Query: 131 --DGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
DGK P PPFK++ILDEAD++ AQ ALRR ME + TRFC++CNYV+ II P+ S
Sbjct: 121 QSDGKVYPVPPFKLIILDEADALLPDAQGALRRMMEDFSDVTRFCILCNYVTRIIDPIAS 180
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RC+K+RFKPL + + R+ + +E++ ++ L SGGD+R AI LQ A+
Sbjct: 181 RCAKYRFKPLIKQALHERISEVASRENIKISTASMNALDHVSGGDLRLAIMYLQY-AQKA 239
Query: 247 GGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHD 303
G + +ED +EV+G + + + + V ++F + + LI + Y A Q+ Q D
Sbjct: 240 HGNNLESEDFVEVSGCVQEERMREYIAVLMSNNFDGMYSMTKLLIQQGYPAHQVLAQLQD 299
Query: 304 IVMSA-SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
V+ +L ++ I KL E RL DG+ + +Q+LDLG+ +
Sbjct: 300 FVVGPLCTLDSAKRGAIALKLCEVEKRLSDGSDDLLQLLDLGAFI 344
>gi|407929691|gb|EKG22503.1| ATPase AAA+ type core [Macrophomina phaseolina MS6]
Length = 342
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 144/326 (44%), Positives = 195/326 (59%), Gaps = 44/326 (13%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK++ DV Q V+VL + L ++LPH LFYGPPGTGKTST++A QL+G
Sbjct: 34 PWVEKYRPKSLSDVNGQDHTVTVLSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGP 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS-------GFNQDGK-PCPPFKIVILD 144
++ R R+LELNASD+RGI ++R+KVK FA+Q S G + PCPPFKI+ILD
Sbjct: 94 ELLRTRVLELNASDERGIGIVREKVKNFARQQLSNPPAGPAGVEYKKRYPCPPFKIIILD 153
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II PL SRCSKFRFK L + R
Sbjct: 154 EADSMTQDAQSALRRTMETYSRITRFCLVCNYVTRIIDPLASRCSKFRFKSLDTGSAARR 213
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L+ I E V A+ LV V E+ GVIP
Sbjct: 214 LEEIAAAEGVRLGEGAVAALVRV----------------------------VEEIAGVIP 245
Query: 265 NPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 317
+E+L K + + + K +ED++ + +SA+Q+ Q +++V+ + D +K
Sbjct: 246 GGTMERLYEAMQPRTKGEVYNEVAKAVEDMVADGWSASQVVAQLYEMVLYDEKVEDLKKN 305
Query: 318 LILEKLAECNARLQDGASEYIQILDL 343
I +E + RL DGA E+++ILDL
Sbjct: 306 KITLVFSEADKRLVDGADEHLEILDL 331
>gi|219109832|ref|XP_002176669.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411204|gb|EEC51132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 350
Score = 266 bits (681), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 140/323 (43%), Positives = 204/323 (63%), Gaps = 8/323 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVE+YRPK++ +V Q EVV+ L+ ++ LPH L YGPPG+GKTS +A C QL+
Sbjct: 17 PWVERYRPKSLQEVSHQTEVVATLQNAVTTGRLPHLLLYGPPGSGKTSVALALCRQLWHP 76
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD--GKPCPPFKIVILDEADSMT 150
+R R+LELNASD+RGI V+R+K+K FA T + N D P PPFKI+ILDEAD++T
Sbjct: 77 SQWRRRVLELNASDERGISVVRNKIKHFASLTVAKGNNDMENYPNPPFKIIILDEADTVT 136
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC- 209
AQAALRR +E +K TRF LICNYV+ +I+PL SRC+KFRF+ L ++M RL++I
Sbjct: 137 PDAQAALRRIIEAHSKITRFILICNYVTRVIEPLASRCAKFRFQSLPPSSMKARLEWIAN 196
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPNPWI 268
EQ + L+ ++E + GDMR+A+T LQS L G V++ L E+ G+ P +
Sbjct: 197 EQNCSESEKDLLDDILEYADGDMRQAVTTLQSVHSLAAGGAKVDKAALAEIAGLPPPAIV 256
Query: 269 EKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
+ L L +SF +EK +E L E +SA L +++ L++ KA + ++AE
Sbjct: 257 DMLWTALLSNSFDTMEKVVETLSAEGFSAQLLLSALVPKLVTDQDLNELSKAELAIRIAE 316
Query: 326 CNARLQDGASEYIQILDLGSIVI 348
+ +G E +Q+L + S+ +
Sbjct: 317 AEKNMIEGGDEQLQLLTVCSLAV 339
>gi|115384904|ref|XP_001208999.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624]
gi|114196691|gb|EAU38391.1| activator 1 41 kDa subunit [Aspergillus terreus NIH2624]
Length = 319
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 142/307 (46%), Positives = 195/307 (63%), Gaps = 33/307 (10%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT--- 124
LFYGPPGTGKTST++A LFG +YR RILELNASD+RGI ++RDK+K FA+
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPSLYRSRILELNASDERGIGIVRDKIKNFARSQLSH 60
Query: 125 ASGFNQD---GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
+SG +++ PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II
Sbjct: 61 SSGMSEEYLAQYPCPPFKIIILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRII 120
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
PL SRCSKFRFK L + RL++I + E++ + ++ L++ S GD+RRAIT +QS
Sbjct: 121 DPLASRCSKFRFKALDNSAAGERLEHIAKLENLTLESGVVDKLIQCSEGDLRRAITYMQS 180
Query: 242 CARLKGGEGIVNED-------------------VLEVTGVIPNPWIEKLLKV-------D 275
ARL G +G +D V E+ GVIP I++L K
Sbjct: 181 AARLVGAQGGNKKDGDEDSEMTDATPQPVTVRMVEEIAGVIPEEIIDRLAKAMQPVKIGS 240
Query: 276 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 335
S++ + K I D++ + +SATQL Q + V+ ++ D QK I+ +E + RL DGA
Sbjct: 241 SYEAVSKVITDVVADGWSATQLLLQLYRRVVYNDAIPDIQKNKIVMVFSEMDKRLSDGAD 300
Query: 336 EYIQILD 342
E++ ILD
Sbjct: 301 EHLSILD 307
>gi|399219086|emb|CCF75973.1| unnamed protein product [Babesia microti strain RI]
Length = 340
Score = 263 bits (672), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 146/318 (45%), Positives = 199/318 (62%), Gaps = 9/318 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPKTI +V Q VS L + + ++PH +FYGPPGTGKTS +A QLFG
Sbjct: 15 LPWVEKYRPKTISEVSHQINPVSALNQIVKTLNMPHLIFYGPPGTGKTSAALALARQLFG 74
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN---QDGKPCPPFKIVILDEADS 148
D +ERILELNASDDRGI V+R+K+KT+A+ S + GKP PP+KIVILDEAD
Sbjct: 75 KDGLKERILELNASDDRGIDVVREKIKTYARLNISKNRINPETGKPMPPWKIVILDEADM 134
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRR +E + TRF ICNY+ II PL SRCS RF+P+A+ ++RL +I
Sbjct: 135 MTSDAQAALRRAIENYSTITRFIFICNYIYKIIDPLCSRCSLQRFQPIAKQAQISRLVFI 194
Query: 209 CEQESVMC-DFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW 267
CEQE + +A+E LV S GD+RR+IT LQ+ L + I + V ++ G+ P
Sbjct: 195 CEQEKISSFTNEAMEALVRVSQGDLRRSITLLQTIGSLY--KNITEDIVYDIAGIPPRVV 252
Query: 268 IEKLLKV--DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
+ LLK + ++ ++ +I + + + + Q DIV + L D KA I +L+
Sbjct: 253 VIDLLKSCKGTMDDVDTAVKIIIDQGWDVSDIMSQICDIVANDVELDDISKARISLELSN 312
Query: 326 CNARLQDGASEYIQILDL 343
+ L GAS+Y Q+L L
Sbjct: 313 RDFALFQGASQYFQLLSL 330
>gi|322705612|gb|EFY97196.1| activator 1 41 kDa subunit [Metarhizium anisopliae ARSEF 23]
Length = 314
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 141/305 (46%), Positives = 194/305 (63%), Gaps = 30/305 (9%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ----Q 123
LFYGPPGTGKTST++A +LFG +M + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 1 MLFYGPPGTGKTSTILALAKELFGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
A G+++ PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II P
Sbjct: 61 PAPGYSKK-YPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDP 119
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L + RL+ I E V + A++ L+ S GD+R+AIT LQS A
Sbjct: 120 LASRCSKFRFKSLDQGNARKRLEEIASAEGVPLEDGAIDALIRCSEGDLRKAITFLQSAA 179
Query: 244 RLKG-------GEGIVNED----------VLEVTGVIPNPWIEKLLKV-------DSFQV 279
RL G G+G D V ++ GVIP P I+ L++ +++
Sbjct: 180 RLVGASAPGKDGDGDEQMDVDSKPVTVKIVEDIAGVIPAPTIDGLVEALRPRDAGQTYRS 239
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
+ K +ED++ + +SATQ+ Q + + + +++D K I+ +E + RL DGA E++
Sbjct: 240 VSKIVEDMVADGWSATQVVSQLYQALTADETIADAHKNKIVMVFSEVDKRLVDGADEHLS 299
Query: 340 ILDLG 344
ILDL
Sbjct: 300 ILDLA 304
>gi|302925691|ref|XP_003054145.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735086|gb|EEU48432.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 314
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 143/305 (46%), Positives = 196/305 (64%), Gaps = 30/305 (9%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ----Q 123
LFYGPPGTGKTST++A +L+G +M + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPEMIKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
+ G+ +D PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II P
Sbjct: 61 PSPGY-KDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDP 119
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L ++ RL+ I E+E V + A++TL++ S GD+R+AIT LQS A
Sbjct: 120 LASRCSKFRFKSLDQSNAKKRLEEIAEKEGVPLEDGAVDTLIKCSEGDLRKAITFLQSAA 179
Query: 244 RLKG---------GEGIVNED--------VLEVTGVIPNPWIEKLLKV-------DSFQV 279
RL G G ++ D V ++ GVIP IE L++ S+Q
Sbjct: 180 RLVGAGTPEKDADGADTMDVDKKAVTVKIVEDIAGVIPESTIEDLVQAIRPKSSGPSYQN 239
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
+ K +ED++ + +SA Q+ Q + + ++ D QK I+ +E + RL DGA E++
Sbjct: 240 VSKVVEDMVADGWSAGQVVGQLYQALTFDETIPDPQKNKIVLIFSEVDKRLVDGADEHLS 299
Query: 340 ILDLG 344
ILDL
Sbjct: 300 ILDLA 304
>gi|156093657|ref|XP_001612867.1| replication factor C subunit 2 [Plasmodium vivax Sal-1]
gi|148801741|gb|EDL43140.1| replication factor C subunit 2, putative [Plasmodium vivax]
Length = 330
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 205/322 (63%), Gaps = 9/322 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q VS+LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 LPWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
D ER+LELNASDDRGI V+R+K+K + + + S ++ + PP+K+V+LDEAD
Sbjct: 64 RDNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKDKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
C+ E + AL+ ++ET+ GD+RRA++ LQ C+ + I E VL+V+G+ + I
Sbjct: 184 CKSEGINILDDALDKIIETTQGDLRRAVSILQLCSCI--DPMITLESVLDVSGLPADDII 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
K++ K+ + +EK ++D+I + Y +F ++ + + D K+ IL +L+
Sbjct: 242 SKIIDACKMKDLKNVEKAVQDVIEDGYDVAYIFKSLNNYFVMNTEYQDSVKSQILLELSR 301
Query: 326 CNARLQDGASEYIQILDLGSIV 347
+ RL GA++YIQ++ S V
Sbjct: 302 HDYRLHSGATKYIQLMSFASSV 323
>gi|380471924|emb|CCF47039.1| replication factor C subunit 2 [Colletotrichum higginsianum]
Length = 315
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 140/302 (46%), Positives = 193/302 (63%), Gaps = 26/302 (8%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
LFYGPPGTGKTST++A +L+G +M + R+LELNASD+RGI ++R+KVK FA+ +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPEMMKSRVLELNASDERGISIVREKVKDFARMQLTN 60
Query: 128 FNQDGK---PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
D K PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II PL
Sbjct: 61 PTNDYKKRYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDPL 120
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRCSKFRFK L + RL+ I E E V + AL+ L++ S GD+R+AIT LQS AR
Sbjct: 121 ASRCSKFRFKSLDQGNAKKRLEDIAENEGVQLEDGALDALIKCSEGDLRKAITFLQSAAR 180
Query: 245 LKG-GEGIVNED--------------VLEVTGVIPNPWIEKLLKV-------DSFQVLEK 282
L G G+ + D + ++ GVIP I++L+ D++Q + K
Sbjct: 181 LVGAGDKDASRDDAMDIDKKPVTVKIIEDIAGVIPENTIDELVSSIRPQGPGDTYQNVAK 240
Query: 283 YIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
+E+++ + +SA Q+ Q + ++ ++ D QK I+ +E + RL DGA E++ ILD
Sbjct: 241 VVENMVADGWSAGQVVTQLYQAIVYDETVPDVQKNKIVLIFSEVDKRLVDGADEHLSILD 300
Query: 343 LG 344
L
Sbjct: 301 LA 302
>gi|353241984|emb|CCA73760.1| probable RFC2-DNA replication factor C, 41 KD subunit
[Piriformospora indica DSM 11827]
Length = 358
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 152/355 (42%), Positives = 197/355 (55%), Gaps = 59/355 (16%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPKT+D+V Q VSVLKK S CH +
Sbjct: 22 PWVEKYRPKTMDEVSSQDHAVSVLKKHYSRQ---------------------TCHICYSM 60
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ---DGK--PCPPFKIVILDEA 146
++R R+LELNASD+RGI ++R+K+K FA+QT DGK PCPP+K++ILDEA
Sbjct: 61 DPLFRHRVLELNASDERGIAIVREKIKDFARQTPKAVTSAASDGKVYPCPPYKLIILDEA 120
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ ALRR ME K TRFCLICNYV+ II+PLTSRCSKFRFKPL ++ RL+
Sbjct: 121 DSMTQDAQGALRRIMETYAKITRFCLICNYVTRIIEPLTSRCSKFRFKPLDTSSTSIRLK 180
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL---------KGGEGIVNEDVL 257
I E+V + LV TSGGD+RRAIT LQSC+RL K + I EDV
Sbjct: 181 EIAAAENVEVSDDVVSALVTTSGGDLRRAITYLQSCSRLAHATVDEVNKAPQKIRPEDVQ 240
Query: 258 EVTGVIPNPWIEKL----------------------LKVDSFQVLEKYIEDLILEAYSAT 295
E+ GV+P+ IE ++ +F + K ++++ E YSA
Sbjct: 241 EIAGVVPDHVIESFAAVLGVEVDGASKNSMSIDNATVRAKTFDDVRKKVKEISREGYSAA 300
Query: 296 QLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
Q+ Q HD+V+ L ++KA L E + L DGA E + L+ G + KA
Sbjct: 301 QILSQLHDVVILHPRLDARRKAACALILGEADKALCDGADEELWTLETGLRIWKA 355
>gi|390371040|dbj|GAB64921.1| replication factor C subunit 2 [Plasmodium cynomolgi strain B]
Length = 342
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 204/322 (63%), Gaps = 9/322 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q VS+LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 16 LPWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG 75
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
D ER+LELNASDDRGI V+R+K+K + + + S ++ + PP+K+V+LDEAD
Sbjct: 76 RDNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADM 135
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 136 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPINIKKEKLLYI 195
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
C+ E + AL ++ET+ GD+RRA++ LQ C+ + I E VL+V+G+ + I
Sbjct: 196 CKSEGINILDDALGKIIETTQGDLRRAVSILQLCSCI--DPMITLESVLDVSGLPADDII 253
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
K++ K+ + +EK ++D+I + Y +F ++ + + D K+ IL +L+
Sbjct: 254 SKIIDACKMKDLKNVEKAVQDIIEDGYDVAYIFKSLNNYFVMNTEYQDSVKSQILLELSR 313
Query: 326 CNARLQDGASEYIQILDLGSIV 347
+ RL GA++YIQ++ S V
Sbjct: 314 HDYRLHSGATKYIQLMSFASSV 335
>gi|221052961|ref|XP_002257855.1| replication factor C, subunit 2 [Plasmodium knowlesi strain H]
gi|193807687|emb|CAQ38391.1| replication factor C, subunit 2, putative [Plasmodium knowlesi
strain H]
Length = 330
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 205/322 (63%), Gaps = 9/322 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q VS+LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 LPWVEKYRPKKLDDIVHQTNAVSMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
D ER+LELNASDDRGI V+R+K+K + + + S ++ + PP+K+V+LDEAD
Sbjct: 64 RDNISERVLELNASDDRGINVVREKIKAYTRISISKNKINSETNETLPPWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + + +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIYSRCSCYRFQGIPIDVKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
C+ E + AL+ ++ET+ GD+RRA++ LQ C+ + I E VL+V+G+ + I
Sbjct: 184 CKSEGINILDDALDKIIETTQGDLRRAVSILQLCSCI--DPMITLESVLDVSGLPADDII 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
K++ K+ + +EK ++D+I + Y +F ++ + + D K+ IL +L+
Sbjct: 242 SKIIDACKMKDLKNVEKAVQDIIEDGYDVAYIFKSLNNYFVMNTEYQDSVKSQILLELSR 301
Query: 326 CNARLQDGASEYIQILDLGSIV 347
+ RL GA++YIQ++ S V
Sbjct: 302 HDYRLHSGATKYIQLMSFASSV 323
>gi|294920987|ref|XP_002778643.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
gi|239887323|gb|EER10438.1| Replication factor C subunit, putative [Perkinsus marinus ATCC
50983]
Length = 277
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 129/238 (54%), Positives = 166/238 (69%), Gaps = 7/238 (2%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+ + VPWVEKYRP ++++ Q EVV LK+ + +LPH LFYGPPG GKTS ++A
Sbjct: 19 QERAVPWVEKYRPARVEELAHQPEVVGALKEAVGTGNLPHLLFYGPPGNGKTSAILALAR 78
Query: 89 QLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-DGKPCPPFKIVILDEA 146
+LFG +++R+R+LELNASD+RGI VIRDKVK FAQ + GK PPFKI++LDEA
Sbjct: 79 ELFGPELWRDRVLELNASDERGIDVIRDKVKKFAQISVRAVAPGSGKSAPPFKIIVLDEA 138
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQAALRR +E T+ TRFC+ICNYVS II+PL SRC+KFRF+PL++ + RL+
Sbjct: 139 DSMTKDAQAALRRIIENYTQVTRFCIICNYVSRIIEPLQSRCAKFRFEPLSDESQRGRLE 198
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQ---SCARLKGGEGIVNEDVLEVTG 261
YI E V A+E L+ TS GD+R AI LQ SC L E I E++LE +G
Sbjct: 199 YIANCEGVKMANGAMEALLGTSNGDLRSAINTLQMVSSC--LSDDEAITVEEILEASG 254
>gi|347524285|ref|YP_004781855.1| Replication factor C [Pyrolobus fumarii 1A]
gi|343461167|gb|AEM39603.1| Replication factor C [Pyrolobus fumarii 1A]
Length = 327
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 143/311 (45%), Positives = 190/311 (61%), Gaps = 15/311 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+D+++ Q+E+V LKK + ++PH LF GPPGTGKT+ A H LFG+
Sbjct: 10 WAEKYRPKTLDEIVNQEEIVRRLKKFVEEKNMPHLLFVGPPGTGKTTAAHALAHDLFGEN 69
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI+ IR KVK FA+ P PFKIV+LDEAD+MT AQ
Sbjct: 70 YRQYMLELNASDERGIETIRTKVKEFARSRTP-------PGIPFKIVLLDEADNMTADAQ 122
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T STRF LI NY S II+P+ SRC+ FRF PL + ++ RL++ICEQE
Sbjct: 123 QALRRLMEMYTASTRFILIANYPSKIIEPIQSRCAIFRFTPLKKEDVVARLKWICEQEGC 182
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
D +ALET+ E S GDMRRAI LQ+ A L + E V +V G+ I +++K+
Sbjct: 183 QYDEEALETIYEISEGDMRRAINILQAAAALG---KVTVEAVYKVVGLAHPKEIREIIKL 239
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNAR 329
F K + +L++ S T + Q H V L D+ + LI + E R
Sbjct: 240 ALDGRFTDARKKLRELMINYGLSGTDVIKQIHKEVFGPELKLPDEVRVLIADYAGEIQFR 299
Query: 330 LQDGASEYIQI 340
L +GA + IQ+
Sbjct: 300 LVEGADDEIQL 310
>gi|46108652|ref|XP_381384.1| hypothetical protein FG01208.1 [Gibberella zeae PH-1]
Length = 314
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 141/304 (46%), Positives = 192/304 (63%), Gaps = 30/304 (9%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS- 126
LFYGPPGTGKTST++A +L+G DM + R+LELNASD+RGI ++R+KVK FA+ +
Sbjct: 1 MLFYGPPGTGKTSTVLALAKELYGPDMIKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 127 ---GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
G+ +D PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II P
Sbjct: 61 PPPGY-KDKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDP 119
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L ++ RL+ I E+E V + A++ L++ S GD+R+AIT LQS A
Sbjct: 120 LASRCSKFRFKSLDQSNAKKRLEEIAEKEGVPLEDGAVDALIKCSEGDLRKAITYLQSAA 179
Query: 244 RLKG-------GEG----------IVNEDVLEVTGVIPNPWIEKLLKV-------DSFQV 279
RL G GEG + + V ++ GVIP+ I L+ S+Q
Sbjct: 180 RLVGASASDKDGEGDEAMDVDKKAVTVKIVEDIAGVIPDSTIGDLVSAIRPKSSGSSYQA 239
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
+ +E L+ + +SA Q+ Q + + + D QK I+ +E + RL DGA E++
Sbjct: 240 ISDVVEKLVADGWSAGQVVGQLYQALTYDEIIPDAQKNKIVMVFSEVDKRLVDGADEHLS 299
Query: 340 ILDL 343
+LDL
Sbjct: 300 VLDL 303
>gi|124801405|ref|XP_001349685.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
gi|3845290|gb|AAC71957.1| replication factor C, subunit 2 [Plasmodium falciparum 3D7]
Length = 330
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 205/322 (63%), Gaps = 9/322 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q V +LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 IPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADS 148
+ ER+LELNASDDRGI V+R+K+K + + + S ++ + P +K+V+LDEAD
Sbjct: 64 KENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
C+ E++ ALE ++ET+ GD+RRA++ LQ C+ + I VL+V+G+ + +
Sbjct: 184 CQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCI--NTKITLNSVLDVSGLPSDNIV 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
K++ K+ +++EK ++D+I + + +F F++ ++ + D K IL +L+
Sbjct: 242 YKIIDACKMKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILLELSR 301
Query: 326 CNARLQDGASEYIQILDLGSIV 347
+ RL GA++YIQ+L S V
Sbjct: 302 HDYRLHCGATQYIQLLSFASSV 323
>gi|322697954|gb|EFY89728.1| activator 1 41 kDa subunit [Metarhizium acridum CQMa 102]
Length = 314
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 138/305 (45%), Positives = 193/305 (63%), Gaps = 30/305 (9%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTAS- 126
LFYGPPGTGKTST++A +LFG +M + R+LELNASD+RGI ++R+KVK FA+ +
Sbjct: 1 MLFYGPPGTGKTSTILALAKELFGPEMMKSRVLELNASDERGISIVREKVKNFARMQLTN 60
Query: 127 ---GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
G+++ PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ II P
Sbjct: 61 PTPGYSKR-YPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRIIDP 119
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L + RL+ I E V + A++ L+ S GD+R+AIT LQS A
Sbjct: 120 LASRCSKFRFKSLDQGNARKRLEEIASAEGVPLEDGAIDALIRCSEGDLRKAITFLQSAA 179
Query: 244 RLKG-------GEG----------IVNEDVLEVTGVIPNPWIEKLLKV-------DSFQV 279
RL G G+G + + V ++ GVIP I+ L+ +++
Sbjct: 180 RLVGASAPGKDGDGDEQMDVDSKPVTAKIVEDIAGVIPGQTIDGLVDALRPRDAGQTYRS 239
Query: 280 LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
+ K +ED++ + +SATQ+ Q + + + +++D K I+ +E + RL DGA E++
Sbjct: 240 VSKIVEDMVADGWSATQVVSQLYQALTTDETIADAHKNKIVMVFSEVDKRLVDGADEHLS 299
Query: 340 ILDLG 344
ILDL
Sbjct: 300 ILDLA 304
>gi|169602695|ref|XP_001794769.1| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
gi|160706232|gb|EAT88110.2| hypothetical protein SNOG_04350 [Phaeosphaeria nodorum SN15]
Length = 1017
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 143/359 (39%), Positives = 197/359 (54%), Gaps = 57/359 (15%)
Query: 43 TIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILE 101
T+ +V Q + +L + L ++LPH LFYGPPGTGKTST++A QL+G ++ + R+LE
Sbjct: 649 TLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTILALAKQLYGPELMKSRVLE 708
Query: 102 LNASDDRGIQVIRDKVKTFAQQ---TASGFN----------------QDGKPCPPFKIVI 142
LNASD+RGI ++R KVK FA+Q A +N +D CPPFKI++
Sbjct: 709 LNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGEAKMVRYRDKYSCPPFKIIV 768
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II PL SRCSKFRFK L + +
Sbjct: 769 LDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDPLASRCSKFRFKSLDQGNAV 828
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN--------- 253
R+ I + E V D E LV + GD+R+AIT LQS ARL G
Sbjct: 829 RRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAARLVGATQTAGRKKKVVVDD 888
Query: 254 -------------------EDVLEVTGVIPNPWIEKL---------LKVDSFQVLEKYIE 285
E + E+ GVIP P + K + + K +E
Sbjct: 889 EDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDALFPKSAAKSIRYNEIAKVVE 948
Query: 286 DLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344
++I E +SA+Q Q ++ VM + D +K + +E + RL DG E++ +LDLG
Sbjct: 949 NMIAEGWSASQTVSQLYEQVMFDERVEDIKKVRLAGVFSETDKRLVDGGDEHLAVLDLG 1007
>gi|440465527|gb|ELQ34846.1| replication factor C subunit 2 [Magnaporthe oryzae Y34]
gi|440481017|gb|ELQ61644.1| replication factor C subunit 2 [Magnaporthe oryzae P131]
Length = 323
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 141/306 (46%), Positives = 196/306 (64%), Gaps = 29/306 (9%)
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT 124
LPH LFYGPPGTGKTST++A +LFG ++ + R+LELNASD+RGI ++R+KVK FA+
Sbjct: 6 LPHMLFYGPPGTGKTSTVLALAKELFGPELMKSRVLELNASDERGISIVREKVKDFARMQ 65
Query: 125 AS----GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
+ G+ + PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCLICNYV+ I
Sbjct: 66 LTNPPPGY-KSKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLICNYVTRI 124
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240
I PL SRCSKFRFK L + +RL+ I +E V + A++ L++ S GD+R+AIT LQ
Sbjct: 125 IDPLASRCSKFRFKSLDQENARSRLEDIAAKEGVALEDGAVDALIKCSEGDLRKAITFLQ 184
Query: 241 SCARL---KGGEGIVNEDVLEV-------------TGVIPNPWIEKLLKVD-------SF 277
S ARL G G ED ++V GVIP I+ L++ ++
Sbjct: 185 SAARLVGAVGAAGAGQEDKMDVDSRPVTVRIIEDIAGVIPGKTIDALVEAIRPRGAALTY 244
Query: 278 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 337
Q + K +ED++ + +SATQ+ Q + ++ + + QK I+ +E + RL DG+ E+
Sbjct: 245 QAVSKVVEDMVADGWSATQVVGQLYQAIVYDEGIPNIQKNEIVMVFSEVDKRLVDGSDEH 304
Query: 338 IQILDL 343
+ ILDL
Sbjct: 305 LSILDL 310
>gi|238484697|ref|XP_002373587.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus
NRRL3357]
gi|220701637|gb|EED57975.1| DNA replication factor C subunit Rfc2, putative [Aspergillus flavus
NRRL3357]
Length = 320
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/310 (45%), Positives = 192/310 (61%), Gaps = 34/310 (10%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTAS- 126
LFYGPPGTGKTST++A LFG +YR RILELNASD+RGI ++R+KVK FA+ S
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPALYRSRILELNASDERGIAIVREKVKDFARVQLSH 60
Query: 127 --GFNQ---DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
G ++ + PCPPFKI+ILDEADSMT AQ+ALRRTME +K TRFCL+CNYV+ II
Sbjct: 61 PTGVDKSYFEKYPCPPFKIIILDEADSMTQDAQSALRRTMETYSKITRFCLVCNYVTRII 120
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+PL SRCSKFRFKPL + RL I + E++ + ++ L++ S GD+RRAIT +QS
Sbjct: 121 EPLASRCSKFRFKPLDNSAAGDRLAQIAKLENLELEDGVVDKLIQCSDGDLRRAITYMQS 180
Query: 242 CARLKGGEG--------------------IVNEDVLEVTGVIPNPWIEKLLKV------- 274
ARL G G I V E+ GVIP +++L++
Sbjct: 181 GARLVGATGNSGRQDGGEDAEMTDASSQVITVRMVEEIAGVIPESVLDQLVQAMQPKKIG 240
Query: 275 DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGA 334
S++ + K D++ + +SATQL Q + V+ ++ D QK I+ +E + RL DGA
Sbjct: 241 SSYEAVSKVTTDIVADGWSATQLLAQLYRRVVYNDAIPDIQKNKIVMVFSEMDKRLVDGA 300
Query: 335 SEYIQILDLG 344
E++ ILD+
Sbjct: 301 DEHLSILDVA 310
>gi|11559504|gb|AAG37987.1|AF071409_1 replication factor C subunit 2 [Plasmodium falciparum]
Length = 330
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 204/322 (63%), Gaps = 9/322 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD++ Q V +LK+ + ++PH +F+GPPGTGKTS + A H+LFG
Sbjct: 4 IPWVEKYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHLIFHGPPGTGKTSAINALAHELFG 63
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADS 148
+ ER+LELNASDDRGI V+R+K+K + + + S ++ + P +K+V+LDEAD
Sbjct: 64 KENISERVLELNASDDRGINVVREKIKAYTRISISKNKIHSETKEVLPSWKLVVLDEADM 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR +E + TRF LICNY+ I P+ SRCS +RF+ + N +L YI
Sbjct: 124 MTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIKKEKLLYI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
C+ E++ ALE ++ET+ GD+RRA++ LQ C+ + I VL+V+G+ + +
Sbjct: 184 CQNENIDIVDDALEKIIETTEGDLRRAVSILQLCSCI--NTKITLNSVLDVSGLPSDNIV 241
Query: 269 EKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
K++ K+ +++EK ++D+I + + +F F++ ++ + D K IL +L
Sbjct: 242 YKIIDACKMKDLKLVEKTVQDIIEDGFDVAYIFKSFNNYFVTNTEYEDSLKYQILLELFR 301
Query: 326 CNARLQDGASEYIQILDLGSIV 347
+ RL GA++YIQ+L S V
Sbjct: 302 HDYRLHCGATQYIQLLSFASSV 323
>gi|123482551|ref|XP_001323818.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121906690|gb|EAY11595.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 137/315 (43%), Positives = 192/315 (60%), Gaps = 15/315 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD+++Q+E V LK L DLPH +F+GPPGTGKTS +A C LFG
Sbjct: 8 LPWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D +R R+ ELNASD+RGI +R +K FA +GK PFKIVILDEADSMT A
Sbjct: 68 DDFRLRVKELNASDERGIDAVRSSIKEFASLAVP----NGK--IPFKIVILDEADSMTSA 121
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E + TRF +ICNYVS II P+ SRC+KFRFKPL ++ RL I E +
Sbjct: 122 AQNALRRIIETYSSVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIERLHKIFEDQ 181
Query: 213 SVMCDFK-ALETLVETSGGDMRRAITCLQSCARL-KGGEGIVNEDVLEVTGVIPNP---- 266
++ D + ETLV SGGD+R+AIT QS A I +E + ++G PNP
Sbjct: 182 NLSVDSEDTYETLVNISGGDLRKAITFAQSAASTCSLTRKITSEIITSISGA-PNPADVE 240
Query: 267 -WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
+ + L D + +E DL+ Y Q+F+ ++++ + + + +K ++ K+A+
Sbjct: 241 NYFKTCLSAD-WDTIENATIDLVYAGYDIGQIFEILINLIVKTNEIPEAKKPELILKIAQ 299
Query: 326 CNARLQDGASEYIQI 340
+ + + A Q+
Sbjct: 300 ADGAIINRADPQFQL 314
>gi|156088043|ref|XP_001611428.1| hypothetical protein [Babesia bovis T2Bo]
gi|154798682|gb|EDO07860.1| conserved hypothetical protein [Babesia bovis]
Length = 336
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 130/317 (41%), Positives = 197/317 (62%), Gaps = 8/317 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP ++DD++ ++ ++ + D+PH +F+GPPGTGKTS +A Q++G
Sbjct: 5 VPWVEKYRPASLDDIVFHTNAMTTMRHIVESYDMPHMIFHGPPGTGKTSAALAIARQIYG 64
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF---NQDGKPCPPFKIVILDEADS 148
+ +ER+LELNASD+RGI V+R+++KT+ + S Q G+ P FK++ILDEAD
Sbjct: 65 PEGMKERVLELNASDERGINVVRERIKTYTRLNISSNRVNTQTGRVMPNFKMIILDEADM 124
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
+T AQAALRR +E + +RF LICNYV II P+ SRCS F FKP++++ + RL+YI
Sbjct: 125 ITPDAQAALRRIIENFSNISRFILICNYVHKIIGPIYSRCSAFHFKPISQDAQIERLRYI 184
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
C ES+ + AL+ L + S GDMRR++T LQS A L + E V V+G P +
Sbjct: 185 CTAESLEYEDHALDFLTQVSQGDMRRSVTILQSTASLFN--KVTEEAVRNVSGYPPKEIV 242
Query: 269 EKLLKV--DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
++ + Q +E+ + +I + + LF Q + V++++SL+D QKA I +L+
Sbjct: 243 NEIFATCKGTTQDVEELCKKIIYDGWEVATLFQQISEYVVNSASLTDVQKATITIELSGR 302
Query: 327 NARLQDGASEYIQILDL 343
L G +Y Q+ L
Sbjct: 303 ELALIQGGLQYFQLASL 319
>gi|123493043|ref|XP_001326199.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121909110|gb|EAY13976.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 325
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/327 (42%), Positives = 200/327 (61%), Gaps = 16/327 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD+++Q+E V LK L DLPH +F+GPPGTGKTS +A C LFG
Sbjct: 8 LPWVEKYRPKNLDDIVQQEEAVKALKTTLETGDLPHLIFHGPPGTGKTSLALALCRSLFG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ +R R+ ELNASD+RGI +R VK FA +GK PFKIVILDEADSMT A
Sbjct: 68 EDFRLRVKELNASDERGIDAVRSSVKEFASLAVP----NGK--IPFKIVILDEADSMTSA 121
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E + TRF +ICNYVS II P+ SRC+KFRFKPL ++ RL I + +
Sbjct: 122 AQNALRRIIETYSAVTRFIIICNYVSKIIDPILSRCAKFRFKPLDRPAIIQRLHKIFDDQ 181
Query: 213 SVMCDF-KALETLVETSGGDMRRAITCLQSCARL-KGGEGIVNEDVLEVTGVIPNP---- 266
++ D + ETLV+ SGGD+R+AIT QS A I +E + ++G NP
Sbjct: 182 NLSVDKEETFETLVDISGGDLRKAITFAQSAASTCIETRKITSEIITSISGA-ANPSDVE 240
Query: 267 -WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
+ L D + +E DL+ Y +Q+F+ +++ ++ + + +K ++ K+A+
Sbjct: 241 NYFHTCLSAD-WDTIENATTDLVYAGYDISQIFEILISLIVKSNEIPEAKKPQLILKIAQ 299
Query: 326 CNARLQDGASEYIQILDLGSIVIKANK 352
+ + + A Q+L + S I+A+K
Sbjct: 300 ADGSIINRADPQFQLLGI-SASIRASK 325
>gi|378727800|gb|EHY54259.1| replication factor C subunit 2/4 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/367 (37%), Positives = 201/367 (54%), Gaps = 55/367 (14%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRPK++DDV Q+ L++ + A+LPH L +GPPGTGKTST++A C +LFG
Sbjct: 33 VPWVEKYRPKSLDDVKSQEHATETLRRMVHAANLPHLLLFGPPGTGKTSTILALCRELFG 92
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ-----TASGFNQDGKPCPPFKIVILDEA 146
++ + R+ E+NASD+RG+ VIR+KVK FA Q S ++ PCPPFK+VILDEA
Sbjct: 93 PELMKTRVKEMNASDERGLTVIREKVKQFASQHLVSAPVSAEYREKYPCPPFKVVILDEA 152
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D++T AQ+ALRR +E +K+TRFCLI N+VS II P+ SRCSKFRFK L R+Q
Sbjct: 153 DALTTDAQSALRRIIENYSKTTRFCLIANFVSRIIAPIASRCSKFRFKSLEGPQASARIQ 212
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG------------------ 248
I E V + +E ++ S GD+RRAIT LQS ARL G
Sbjct: 213 DILNAEHVEYEDGVVERSLQVSDGDLRRAITLLQSAARLAGAVNSNSSSDGRKPIKKQQR 272
Query: 249 -------------------------EGIVNEDVLEVTGVIPNPWIEKLLKV------DSF 277
I D+ E+ G+ P +KL+ V ++
Sbjct: 273 VAEDSDDEMEDVDADTSAAAGPTKSSKIRIADINEIAGLFPPDSTDKLITVLKKGSTTNY 332
Query: 278 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 337
+ + + D+ Y+A ++ + ++ + K+K + + +E + RL DG E
Sbjct: 333 KRIAAEVNDITASGYAANEVLSSLYSKIIFDDLVDTKKKYKLSQIFSEFDKRLVDGVDEQ 392
Query: 338 IQILDLG 344
+ +LD+
Sbjct: 393 LAMLDMS 399
>gi|307110220|gb|EFN58456.1| hypothetical protein CHLNCDRAFT_48527 [Chlorella variabilis]
Length = 293
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 135/316 (42%), Positives = 186/316 (58%), Gaps = 41/316 (12%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRP++I +V Q+EVV L+ LS +LPH LFYGPPGTGKT++ +A QLFG
Sbjct: 5 PWVEKYRPRSIGEVAHQEEVVQTLQHALSSGNLPHLLFYGPPGTGKTTSALAIVRQLFGP 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ + R+LELNASD+RGI V+RDK+K FA + G G PCPPFK++ILDEADSMT
Sbjct: 65 ELCKARVLELNASDERGIGVVRDKIKNFAANSV-GQGVAGYPCPPFKVIILDEADSMTGD 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME ++ TRF ICNYVS II+PL SRC+KFRFKPL + + R+ +IC
Sbjct: 124 AQNALRRTMETYSRVTRFVFICNYVSRIIEPLASRCAKFRFKPLQGDVINERINHIC--- 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+GG R +L+V+G +P + LL
Sbjct: 181 ------------AGAAGGGCRH---------------------ILDVSGSVPPSAAQGLL 207
Query: 273 ---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ F ++ + DLI + Y A ++ Q ++ + +D K IL +L+E +
Sbjct: 208 AAARSPQFARVQAAVTDLIADGYPAQEILLQLQAALLQDAGAADSAKGKILVRLSEADKS 267
Query: 330 LQDGASEYIQILDLGS 345
L DG+ E++Q+L S
Sbjct: 268 LVDGSDEFLQLLGAAS 283
>gi|71033715|ref|XP_766499.1| replication factor C subunit 2 [Theileria parva strain Muguga]
gi|68353456|gb|EAN34216.1| replication factor C subunit 2, putative [Theileria parva]
Length = 335
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 197/316 (62%), Gaps = 8/316 (2%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K VPWVEKYRPK I DVI Q + VS++++ + ++PH +F+GPPGTGKTS +A Q+
Sbjct: 5 KDVPWVEKYRPKKISDVIFQTQAVSIMEQIVETFNMPHMIFHGPPGTGKTSAALAMARQI 64
Query: 91 FG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN---QDGKPCPPFKIVILDEA 146
+G + RER+LELNASD+RGI V+RD++KT+ + S + + P +K++ILDEA
Sbjct: 65 YGLEGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEA 124
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D +T AQAALRR +E + +RF LICNY+ II P+ SRCS F FKP+ N+ + RL+
Sbjct: 125 DMITADAQAALRRVIENYSSISRFVLICNYLHKIIGPIYSRCSVFHFKPIETNSQVDRLK 184
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
YIC QE + D KALE L S GDMR++IT LQS A L I + V+G P
Sbjct: 185 YICNQEGITFDQKALEFLTTVSSGDMRKSITILQSTACLYN--EITENAINSVSGKPPKE 242
Query: 267 WIEKLLKV--DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
+E++ +V + +E ++++ + + + +F Q + V+ + D +K+ I +LA
Sbjct: 243 VVERIFEVCKNPEGDVESVCKEVVYDGWDISAIFQQISEYVVECDFIGDIEKSKISLELA 302
Query: 325 ECNARLQDGASEYIQI 340
+ L G S+Y Q+
Sbjct: 303 NRDFALLQGGSQYFQL 318
>gi|389860407|ref|YP_006362646.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
gi|388525310|gb|AFK50508.1| replication factor C small subunit [Thermogladius cellulolyticus
1633]
Length = 334
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 196/311 (63%), Gaps = 15/311 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+T+D+V+ Q+EVV+ LKK + ++PH LF GPPGTGKT+ H L+GD
Sbjct: 16 WAEKYRPRTLDEVVNQKEVVARLKKFVEEKNMPHLLFAGPPGTGKTTLAHCLAHDLYGDN 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI VIR KVK FA+ +G PFKI++LDEAD+MT AQ
Sbjct: 76 YRQYMLELNASDERGIDVIRSKVKEFARTRVAG-------EVPFKIILLDEADNMTADAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T +TRF LI NY S II+P+ SRC+ FRF PL+ ++ RL+YI E+E+V
Sbjct: 129 QALRRLMELYTATTRFILIANYPSKIIEPIQSRCAVFRFTPLSREDVVERLKYIAEKENV 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
+ +ALET+ E S GDMR+AI LQ+ + L GE V E V +V G+ + ++L++
Sbjct: 189 KYNTEALETIHELSEGDMRKAINILQAASAL--GEVTV-EAVYKVVGLAHPKEVRQMLQL 245
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNAR 329
+F + +L+L S + Q H +I S LSD+ + +I + E R
Sbjct: 246 ALSGNFTEARSKLRELMLNYGLSGLDIIRQIHREIFSSDIKLSDEARIMIADYAGEIQFR 305
Query: 330 LQDGASEYIQI 340
L +GA + IQ+
Sbjct: 306 LVEGADDEIQL 316
>gi|15920690|ref|NP_376359.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
gi|42559516|sp|Q975D3.1|RFCS_SULTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|342306208|dbj|BAK54297.1| replication factor C small subunit [Sulfolobus tokodaii str. 7]
Length = 327
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 133/313 (42%), Positives = 196/313 (62%), Gaps = 15/313 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+++DD++ Q+++V LK+ + ++PH LF GPPGTGKT+ +A H L+G
Sbjct: 7 ILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYG 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D YR+ LELNASD+RGI VIR+KVK FA+ A G PFK+V+LDEAD+MT
Sbjct: 67 DNYRQYFLELNASDERGIDVIRNKVKEFARTVAGG-------NVPFKVVLLDEADNMTAD 119
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL YI + E
Sbjct: 120 AQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNE 179
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL- 271
V D KALET+ + + GDMR+AI LQ+ + + G + E V +V G+ I ++
Sbjct: 180 KVEYDQKALETIYDITQGDMRKAINILQASS-VYG--KVTVEAVYKVLGLAQPKEIREMI 236
Query: 272 ---LKVDSFQVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECN 327
L+ + + EK E L+ S + Q H ++ + ++ D K L+++ + E
Sbjct: 237 MLALQGNFLKAREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVE 296
Query: 328 ARLQDGASEYIQI 340
R+ +GA + IQ+
Sbjct: 297 YRIMEGADDEIQL 309
>gi|403221343|dbj|BAM39476.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 336
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 136/319 (42%), Positives = 197/319 (61%), Gaps = 13/319 (4%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K VPWVEKYRPK + DVI Q + VS++++ + ++PH +F+GPPGTGKTS +A Q+
Sbjct: 5 KDVPWVEKYRPKKLSDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQI 64
Query: 91 FG-DMYRERILELNASDDRG-IQVIRDKVKTFAQQTASGFN---QDGKPCPPFKIVILDE 145
+G + RER+LELNASD+RG I V+RD++KT+ + S + + P +KI+ILDE
Sbjct: 65 YGLEGMRERVLELNASDERGRIDVVRDRIKTYTRINISNNKINPETNRVMPNYKIIILDE 124
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD +T AQAALRR +E + +RF LICNY+ II P+ SRCS F FKP+ ++ + RL
Sbjct: 125 ADMITADAQAALRRVIENYSGISRFILICNYLHKIIGPIYSRCSVFHFKPIDTSSQVKRL 184
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPN 265
+YIC +E + D KALE L + S GDMR+ IT LQS A L I V V+G P
Sbjct: 185 EYICSKEGIKYDTKALEFLTKVSSGDMRKGITILQSTASLYN--EITENAVYSVSGQPPR 242
Query: 266 PWIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
+E++ K D +E D++ E + + +F Q D V+++ ++ D K+ I
Sbjct: 243 SLVERIFEECRKKDG--DVEAMCRDIVHEGWDVSAIFQQICDYVVNSDAIGDVDKSKISL 300
Query: 322 KLAECNARLQDGASEYIQI 340
+LA + L G S+Y Q+
Sbjct: 301 ELAHRDYALLQGGSQYFQL 319
>gi|288931716|ref|YP_003435776.1| Replication factor C [Ferroglobus placidus DSM 10642]
gi|288893964|gb|ADC65501.1| Replication factor C [Ferroglobus placidus DSM 10642]
Length = 321
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/311 (44%), Positives = 194/311 (62%), Gaps = 16/311 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRPKT+D+V+ Q E++ LK + ++PH LF GPPGTGKT+T IA LFG++
Sbjct: 6 WVEKYRPKTLDEVVGQDEIIQRLKSYVKQKNIPHLLFAGPPGTGKTATAIALARDLFGEV 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE +E+NASD+RGI V+R K+K FA+ G PFKI+ LDEAD++T AQ
Sbjct: 66 WRENFIEMNASDERGIDVVRHKIKEFARTAPIG-------GAPFKIIFLDEADALTADAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +K RF L CNYVS II+P+ SRC+ F+FKP+ + M RL+ I E E +
Sbjct: 119 AALRRTMEMYSKVCRFILSCNYVSRIIEPIQSRCAVFKFKPVPKEAMKKRLKEIAENEGL 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL--- 271
D +ALE L+ SGGD R+AI LQ A L + I E + ++T + K+
Sbjct: 179 EIDDEALEVLIYISGGDFRKAINALQGAAALD--KRITPEILYQITATARPEELRKIIDT 236
Query: 272 -LKVDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
LK + Q + +E+L+ E S + Q +M S+L +K K ++++KL E + R
Sbjct: 237 ALKGNYLQA-KDMLENLMAEYGMSGEDVVSQLFREIMY-SNLDEKLKVVLIDKLGEIDFR 294
Query: 330 LQDGASEYIQI 340
L +GASE IQ+
Sbjct: 295 LTEGASELIQL 305
>gi|296241869|ref|YP_003649356.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
gi|296094453|gb|ADG90404.1| replication factor C small subunit [Thermosphaera aggregans DSM
11486]
Length = 325
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 140/310 (45%), Positives = 188/310 (60%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+T+D+V+ Q E+V+ LKK +S ++PH LF GPPGTGKT+ H L+GD
Sbjct: 8 WTEKYRPRTLDEVVNQSEIVARLKKFVSDKNMPHMLFAGPPGTGKTTMAHCLAHDLYGDN 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ ILELNASD+RGI+VIR KVK FA+ G PFKI++LDEAD+MT AQ
Sbjct: 68 YRQYILELNASDERGIEVIRSKVKEFARTRVVG-------NVPFKIILLDEADNMTADAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T STRF LI NY S II+P+ SR + FRF PL ++ RL+YIC E V
Sbjct: 121 QALRRLMELYTASTRFILIANYPSKIIEPIQSRTAVFRFTPLKREDVVERLKYICSNEKV 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
C AL T+ E S GDMRRAI LQ+ A L GE V E+V +V G+ + +++++
Sbjct: 181 KCHEDALNTIFELSEGDMRRAINILQASAAL--GEATV-ENVYKVVGLAHPREVREMIQL 237
Query: 275 ----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNAR 329
+ + K +I S + Q H + S+ + D+ K +I + + E R
Sbjct: 238 ALSGNFAEARNKLRTLMITYGLSGVDVVKQIHKEIFSSDIKIPDEIKIVIADLVGEIQFR 297
Query: 330 LQDGASEYIQ 339
L +GA + IQ
Sbjct: 298 LVEGADDEIQ 307
>gi|397621040|gb|EJK66073.1| hypothetical protein THAOC_13022 [Thalassiosira oceanica]
Length = 363
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/357 (39%), Positives = 205/357 (57%), Gaps = 42/357 (11%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF-G 92
PWVEKYRP++++DV Q E++S L + LPH LFYGPPG ST C QL+
Sbjct: 9 PWVEKYRPRSLEDVSHQTEIISTLTNAVETNRLPHLLFYGPPGGRFHSTH--KCRQLYEP 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQ-----------------QTASGFNQDGK-- 133
+ R+LELNASD+RGI V+RDK+K FA + G D +
Sbjct: 67 SQLKRRVLELNASDERGISVVRDKIKHFASLAIGSSSGGGSKKNFFAKKGDGEAMDAEEA 126
Query: 134 -----PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
P PPFKI+ILDEAD++T AQAALRR +E +K TRF LICNYV+ II+PL SRC
Sbjct: 127 PSKKYPNPPFKIIILDEADTVTRDAQAALRRVIEAYSKVTRFVLICNYVTRIIEPLASRC 186
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDF------KALETLVETSGGDMRRAITCLQSC 242
+KFRF PL E +M R+ YI +QE C F + ++ ++ S GDMRRA+T LQS
Sbjct: 187 AKFRFAPLPEASMKERIMYISKQEQ--CHFEDEKEAEVIDEILTLSQGDMRRAVTTLQSA 244
Query: 243 ARLKG---GEGIVNEDVLEVTGVIPNPWIEKL---LKVDSFQVLEKYI-EDLILEAYSAT 295
L G G+ I + E+ G+ P I+ L L+ F + ++ E++++E ++A
Sbjct: 245 HSLSGGKDGDPIKKASIAEMAGLPPPKLIDDLVAILQTKRFDAMRDFVRENIVMEGFAAE 304
Query: 296 QLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+ ++ ++D+ K+ I K+AE + L DG+ E +Q+LD+ S+ ++ K
Sbjct: 305 YVLSALMAKIIIMDDVTDEAKSKIAIKVAESDKNLIDGSDETLQLLDVCSLALQNMK 361
>gi|224106792|ref|XP_002333632.1| predicted protein [Populus trichocarpa]
gi|222837855|gb|EEE76220.1| predicted protein [Populus trichocarpa]
Length = 289
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 133/257 (51%), Positives = 166/257 (64%), Gaps = 6/257 (2%)
Query: 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDD 107
Q EVV VL L A+ PH LFYGPPGTGKT+T +A HQL+G ++Y+ +LELNASDD
Sbjct: 18 HQDEVVRVLTNTLETANCPHMLFYGPPGTGKTTTALAIAHQLYGPELYKSMVLELNASDD 77
Query: 108 RGIQVIRDKVKTFAQ-QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETK 166
RGI V+ K+K FA SG Q G PCPP+KI ILDEADSMT AQ ALR TME +K
Sbjct: 78 RGINVVWTKIKDFASVAVGSGQCQGGYPCPPYKITILDEADSMTEDAQNALRLTMETFSK 137
Query: 167 STRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVE 226
TRF ICNY+S II+PL SRC+KFRFKPL+E +R+ +IC +E + D +AL TL
Sbjct: 138 VTRFFFICNYISRIIEPLASRCAKFRFKPLSEEITSSRILHICNEEGLTLDGEALSTLSS 197
Query: 227 TSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKY 283
S GD+ RAIT LQ ARL G I +ED++ V+G I E L K F + K
Sbjct: 198 ISQGDLCRAITYLQGAARLF-GSSISSEDLISVSGAIRQEVTEALYEACKSGDFDLANKE 256
Query: 284 IEDLILEAYSATQLFDQ 300
+ ++I E Y +Q+ Q
Sbjct: 257 VNNIIAEGYPVSQILAQ 273
>gi|388513801|gb|AFK44962.1| unknown [Lotus japonicus]
Length = 231
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 121/202 (59%), Positives = 147/202 (72%), Gaps = 5/202 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK ++DV Q EVV VL L PH LFYGPPGTGKT+T +A HQLFG
Sbjct: 10 PWVEKYRPKQVEDVAYQDEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGP 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN--QDGKPCPPFKIVILDEADSMT 150
++Y+ R+LELNASDDRGI V+R K+K FA A G N + G PCPP+KI++LDEADSMT
Sbjct: 70 ELYKSRVLELNASDDRGINVVRTKIKDFAA-VAVGTNPKKGGYPCPPYKIIVLDEADSMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME +K TRF ICNY+S II+PL SRC+KFRFKPL+E M +R+ YIC
Sbjct: 129 EDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEIMSSRILYICN 188
Query: 211 QESVMCDFKALETLVETSGGDM 232
+E ++ D + L TL S GD+
Sbjct: 189 EEGIL-DAEGLSTLSSISQGDL 209
>gi|340056431|emb|CCC50763.1| putative replication factor C, subunit 3 [Trypanosoma vivax Y486]
Length = 374
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 136/319 (42%), Positives = 187/319 (58%), Gaps = 10/319 (3%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
+R +PWVEKYRP T+D+V+ +E++S ++ + +PHFLFYGPPGTGKT+T+ A
Sbjct: 33 SRTGSLPWVEKYRPSTLDEVVAHEEILSTTRRLIDSGSMPHFLFYGPPGTGKTTTVKACA 92
Query: 88 HQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
H LFG + R +LE+NASDDRGI V+R +V+ FA ++ P FK+VILDEA
Sbjct: 93 HYLFGKERVRANVLEMNASDDRGIDVVRQQVREFASTSSIFCTNSSNPVSSFKLVILDEA 152
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D M+ AQAALRR +EK TK+ RFC+ICN ++ II L SRC++FRF P+ + ML RL+
Sbjct: 153 DQMSGDAQAALRRIIEKYTKNVRFCIICNRINKIIPALQSRCTRFRFAPVKKGAMLPRLK 212
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
++ ++E V + L GDMRR + +QS A + GE + E V TG P P
Sbjct: 213 FVVQEEGVRFTEEGLAAAFRLCNGDMRRCLNIMQSSA-MSAGE-VTEESVYRTTGN-PTP 269
Query: 267 -----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
+E +L D EK + +I + SAT L + H IVM A L K +L
Sbjct: 270 AEVRGIVEDMLAHDYALSWEKMQQAVIEKGVSATDLVREVHHIVM-AMDLPVDCKCFLLT 328
Query: 322 KLAECNARLQDGASEYIQI 340
KLA+ G E I I
Sbjct: 329 KLADVEYYAASGTRESINI 347
>gi|156938086|ref|YP_001435882.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
gi|156567070|gb|ABU82475.1| replication factor C small subunit [Ignicoccus hospitalis KIN4/I]
Length = 329
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 134/312 (42%), Positives = 194/312 (62%), Gaps = 17/312 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK++D++++Q+++V LKK + ++PH LF GPPGTGKT+ +A H L+G+
Sbjct: 9 WAEKYRPKSLDEIVDQEDIVRRLKKFVEEKNVPHMLFAGPPGTGKTTAALALAHDLYGEK 68
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ ILELNASD+RGI VIR KVK FA+ P PFK+VILDEAD+MT AQ
Sbjct: 69 YRQYILELNASDERGIDVIRTKVKEFARSRTP-------PTVPFKLVILDEADNMTADAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + +TRF L+ N+ S II+P+ SRC FRF+PL ++ ++ RL+YIC++E V
Sbjct: 122 QALRRLMEMYSTTTRFILLANFPSKIIEPVQSRCVYFRFRPLPKDKVIERLKYICQKEGV 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLK 273
C+ ALE + S GDMR+AI LQ+ A L G V +D V + G + I+++L+
Sbjct: 182 QCEEDALEEIYNISEGDMRKAINILQAAAAL----GKVTKDAVYKAIGYVHPSKIKEILE 237
Query: 274 V---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNA 328
F K + D+++E S + F +M S L ++ K L+ + E
Sbjct: 238 YALNGDFTKSAKLLRDVMIEYGLSGLDVLKMFQRELMGGSFELPEELKVLLADYAGEVQF 297
Query: 329 RLQDGASEYIQI 340
RL +GA + +Q+
Sbjct: 298 RLAEGADDEVQL 309
>gi|305663891|ref|YP_003860179.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
gi|304378460|gb|ADM28299.1| replication factor C small subunit [Ignisphaera aggregans DSM
17230]
Length = 323
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/314 (43%), Positives = 194/314 (61%), Gaps = 21/314 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+ +++ Q+E+V+ L K + ++PH LF GPPGTGKT+ +A H L+GD
Sbjct: 5 WAEKYRPKTLREIVNQEEIVNRLMKFVEEKNMPHLLFAGPPGTGKTTAALALAHDLYGDE 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R +LELNASD+RGI VIR KVK FA+ G PFKIVILDEAD+MT AQ
Sbjct: 65 WRRYLLELNASDERGIAVIRSKVKEFARSKLPG-------DIPFKIVILDEADNMTADAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF LI NY S II P+ SRC+ FRF PL + +RL++ICEQE V
Sbjct: 118 QALRRIMEMYVETTRFILIANYPSKIIDPIQSRCASFRFTPLKREDVTSRLRWICEQEKV 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
CD L+ + E SGGDMR+AI LQS + L GE V+ +V +V G + +P +++ ++
Sbjct: 178 KCDEDGLDVIYELSGGDMRKAINILQSASAL--GEVTVS-NVYKVVG-LAHP--KEVREI 231
Query: 275 DSFQVLEKYIED-------LILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAEC 326
+ + K+IE +I+ S + Q H + SA + + + ++ + + E
Sbjct: 232 ITLALSGKFIEARDKLHNLMIVYGLSGVDIIKQMHREIFSADLKIPEDIRVILADYIGEI 291
Query: 327 NARLQDGASEYIQI 340
R+ +GA + IQ+
Sbjct: 292 QFRIVEGADDEIQL 305
>gi|154341867|ref|XP_001566885.1| putative replication factor C, subunit 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134064210|emb|CAM40408.1| putative replication factor C, subunit 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 296
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 130/294 (44%), Positives = 188/294 (63%), Gaps = 13/294 (4%)
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQT 124
+PHFLF+GPPGTGKT++++A H+LFG D R R+ ELNASDDRGI V+R+KVK FAQ
Sbjct: 1 MPHFLFHGPPGTGKTTSILAVAHELFGPDYIRSRVRELNASDDRGINVVREKVKIFAQGA 60
Query: 125 ASG-----FNQDGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
S DGK P PPFK++ILDEAD++ AQ ALRR ME + TRFC++CNYV
Sbjct: 61 VSSNGSSVTQSDGKVYPVPPFKLIILDEADALLPDAQGALRRMMEDFSDVTRFCILCNYV 120
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
S II P+ SRC+K+RFKPL ++ + R++Y+ + E + +L+ L SGGD+R AI
Sbjct: 121 SRIIDPIASRCAKYRFKPLVKSALYHRIEYVAQAEGITLSPASLQALDTVSGGDLRLAIM 180
Query: 238 CLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIE---DLILEAYSA 294
LQS + G + + ED + V+G +P +++ + LE+ I+ L+ E ++A
Sbjct: 181 HLQSAQKANGND-LTKEDFISVSGSVPADVMQRYISALFSHRLEEVIQASRRLVAEGFAA 239
Query: 295 TQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
Q+ Q ++SA L+ Q+ I+ KL + RL DG +Y+Q+LD+GS+V
Sbjct: 240 AQVLLQLQSYLLSAECPLNSAQRGKIMLKLCQTERRLADGGDDYLQLLDIGSVV 293
>gi|15897670|ref|NP_342275.1| replication factor C small subunit [Sulfolobus solfataricus P2]
gi|284174995|ref|ZP_06388964.1| replication factor C small subunit [Sulfolobus solfataricus 98/2]
gi|384434284|ref|YP_005643642.1| replication factor C [Sulfolobus solfataricus 98/2]
gi|42559539|sp|Q9UXF5.1|RFCS_SULSO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=SsoRFC small subunit
gi|6015708|emb|CAB57535.1| activator 1, replication factor C, small subunit [Sulfolobus
solfataricus P2]
gi|13813941|gb|AAK41065.1| Activator 1, replication factor C, small subunit (rfc) [Sulfolobus
solfataricus P2]
gi|261602438|gb|ACX92041.1| Replication factor C [Sulfolobus solfataricus 98/2]
Length = 330
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 199/331 (60%), Gaps = 16/331 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + + W EKYRPKT+DD++ Q+E++ LKK + ++PH LF GPPGTGKT+ +A
Sbjct: 3 TKVEEILWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALV 62
Query: 88 HQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
H L+GD Y E LELNASD+RGI VIR+KVK FA+ G PFK+V+LDEAD
Sbjct: 63 HDLYGDNYTEYFLELNASDERGIDVIRNKVKEFARTVIPG-------DIPFKVVLLDEAD 115
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL Y
Sbjct: 116 NMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIY 175
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW 267
I + E D KALET+ + + GDMR++I LQ+ + I E V +V G+
Sbjct: 176 IAKNEKAEYDQKALETIYDITMGDMRKSINILQAAS---AYGKISVEAVFKVLGLAQPKE 232
Query: 268 IEKLLKV---DSF-QVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEK 322
+ +++ + F Q +K LI S + Q H +I S +S++ + L+L+
Sbjct: 233 VREMINLALQGKFTQARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDY 292
Query: 323 LAECNARLQDGASEYIQILD-LGSIVIKANK 352
+ E R+ +GA + IQ+ L + I NK
Sbjct: 293 IGETEFRIIEGADDEIQLSALLAKMAIYGNK 323
>gi|227827646|ref|YP_002829426.1| replication factor C small subunit [Sulfolobus islandicus M.14.25]
gi|229584850|ref|YP_002843352.1| replication factor C small subunit [Sulfolobus islandicus M.16.27]
gi|238619814|ref|YP_002914640.1| replication factor C small subunit [Sulfolobus islandicus M.16.4]
gi|385773316|ref|YP_005645882.1| replication factor C [Sulfolobus islandicus HVE10/4]
gi|385775948|ref|YP_005648516.1| replication factor C [Sulfolobus islandicus REY15A]
gi|227459442|gb|ACP38128.1| Replication factor C [Sulfolobus islandicus M.14.25]
gi|228019900|gb|ACP55307.1| Replication factor C [Sulfolobus islandicus M.16.27]
gi|238380884|gb|ACR41972.1| Replication factor C [Sulfolobus islandicus M.16.4]
gi|323474696|gb|ADX85302.1| Replication factor C [Sulfolobus islandicus REY15A]
gi|323477430|gb|ADX82668.1| Replication factor C [Sulfolobus islandicus HVE10/4]
Length = 330
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 196/326 (60%), Gaps = 16/326 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+T+DD++ Q+E++ LKK + ++PH LF GPPGTGKT+ +A H L+G
Sbjct: 8 ILWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y E LELNASD+RGI VIR+KVK FA+ G PFK+V+LDEAD+MT
Sbjct: 68 DNYVEYFLELNASDERGIDVIRNKVKEFARTVIPG-------NVPFKVVLLDEADNMTAD 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL YI + E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
D KALET+ + + GDMR++I LQ+ + I E V +V G+ + +++
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQAAS---AYGKISVEAVFKVLGLAQPKEVREMI 237
Query: 273 KV---DSF-QVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECN 327
+ F Q EK L+ S + Q H +I S +S++ + L+L+ + E
Sbjct: 238 SLALQGKFTQAREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETE 297
Query: 328 ARLQDGASEYIQILD-LGSIVIKANK 352
R+ +GA + IQ+ L + I NK
Sbjct: 298 FRIIEGADDEIQLSALLAKMAIYGNK 323
>gi|392867577|gb|EAS29182.2| DNA replication factor C subunit Rfc2 [Coccidioides immitis RS]
Length = 322
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 135/311 (43%), Positives = 189/311 (60%), Gaps = 36/311 (11%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTAS 126
LFYGPPGTGKTST++A LFG +YR RILELNASD+RGI ++R+K+K FA+ Q +
Sbjct: 1 MLFYGPPGTGKTSTILALAKSLFGPKLYRSRILELNASDERGINIVREKIKDFARIQLSH 60
Query: 127 GFNQDGK-----PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
D + PCPPFKI+ILDEADSMT AQ+ALRRTME+ ++ TRFCL+CNYV+ II
Sbjct: 61 PPAHDSEYRKQYPCPPFKIIILDEADSMTQDAQSALRRTMERFSRITRFCLVCNYVTRII 120
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
PL SRCSKFRFK L + TRL+ I + E + D ++ L+ S GD+RRAIT +QS
Sbjct: 121 DPLASRCSKFRFKSLDGSAAGTRLEEIAKTEKLRLDNGVVDALIRCSEGDLRRAITYMQS 180
Query: 242 CARLKGG---------------------EGIVN-EDVLEVTGVIPNPWIEKLLKV----- 274
ARL G G++ + V E+ GV+P+ + +L+
Sbjct: 181 AARLVGSGLSGKSGKDESGDEVMTDADQSGVITVQTVEEIAGVVPDKVVNRLIDAMQPKK 240
Query: 275 --DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 332
++ + + + D++ + +SA Q+ Q + ++ S+ D QK I+ +E + RL D
Sbjct: 241 GGSVYEGVARVVTDIVADGWSAGQMLSQMYQAIVFNESIPDIQKNDIVLVFSEYDKRLID 300
Query: 333 GASEYIQILDL 343
GA E + ILDL
Sbjct: 301 GADEQLSILDL 311
>gi|71662047|ref|XP_818036.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70883263|gb|EAN96185.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 195/324 (60%), Gaps = 16/324 (4%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST ++ +PWVEKYRP T+D+V+ ++++S ++ + +LPH LFYGPPGTGKT+T
Sbjct: 8 STGHAAKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTT 67
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP---- 137
+ A + LFG D R +LE+NASDDRGI V+R +V+ FA + S F P P
Sbjct: 68 IKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFA--STSSFYFASAPAAPTIAA 125
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
FK+VILDEAD M+ AQAALRR +EK TK+ RFC++CN+++ II L SRC++FRF P+
Sbjct: 126 FKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVK 185
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ ML+RL+++ ++E V + L S GD+RR + LQ+ A + GE I E V
Sbjct: 186 KSAMLSRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASA-MSAGE-ITEESVY 243
Query: 258 EVTGVIPNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLS 312
VTG P P +E ++ D EK + + + S+T L + H IVM A L
Sbjct: 244 RVTGN-PTPADVRGIVEDMIAHDFAASWEKVHQTVSEKGVSSTDLVREVHHIVM-AMDLP 301
Query: 313 DKQKALILEKLAECNARLQDGASE 336
+ K +L KLA+ GA E
Sbjct: 302 QESKCFLLMKLADVEYYAAGGAKE 325
>gi|449018110|dbj|BAM81512.1| replication factor C subunit 5 [Cyanidioschyzon merolae strain 10D]
Length = 366
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 191/328 (58%), Gaps = 12/328 (3%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T+ ++ WVEKYRP+ +D+++ E+ L++ ++ LPH LFYGPPGTGKT+ +
Sbjct: 8 TATQSEQSETIWVEKYRPRELDEIVAHDEIRGTLRRLIAERTLPHLLFYGPPGTGKTTAI 67
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
+A ++FG ++ +LELNASDDRGI V+R+++KTFA + G K+VIL
Sbjct: 68 LACAREMFGAQFKTMVLELNASDDRGIDVVREQIKTFASTRHIYALKAG-----IKLVIL 122
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AAQAALRR MEK T + RFCLICNY + II + SRC++FRF+P+ M+
Sbjct: 123 DEADAMTSAAQAALRRIMEKYTSNIRFCLICNYANKIIPAIQSRCTRFRFQPVPVAQMIQ 182
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
RL+YI ++E V D A + L + GDMRRAI +QS L V ED + +
Sbjct: 183 RLEYIADREGVPVDRAAFDALARIAQGDMRRAIYLMQSTF-LASASARVTEDGVYANAGM 241
Query: 264 PNP----WIEKLLKVDSF-QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
P+P I ++L D F Q K E + ++ + H+ VM LS K KA
Sbjct: 242 PSPADLHAIAQILLYDPFAQAFCKISEIKKGKGFALLDMIHGLHEAVM-LMELSPKVKAF 300
Query: 319 ILEKLAECNARLQDGASEYIQILDLGSI 346
+ E+LA RL SE IQ+ L I
Sbjct: 301 LFEQLANMEWRLVSATSERIQLAALVGI 328
>gi|339264352|ref|XP_003366698.1| hypothetical protein Tsp_15369 [Trichinella spiralis]
gi|316956812|gb|EFV46929.1| hypothetical protein Tsp_15369 [Trichinella spiralis]
Length = 235
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 118/184 (64%), Positives = 143/184 (77%), Gaps = 1/184 (0%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF 128
LFYGPPGTGKTS ++A C Q+FG ++YR+R+LELNASD+RGI VIRDKVK F+Q AS
Sbjct: 5 LFYGPPGTGKTSAILALCRQIFGSEIYRDRVLELNASDERGIDVIRDKVKLFSQFAASEI 64
Query: 129 NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
+ GK CPP K+VILDEADSMT AQAALRRTME+E+K+TRFCLICNY+SCII+P+TSRC
Sbjct: 65 TEGGKKCPPLKMVILDEADSMTKQAQAALRRTMERESKTTRFCLICNYISCIIEPITSRC 124
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
+KFRFKPL + RL+ ICE ESV D AL +L+ GD+RRAI LQS A K
Sbjct: 125 AKFRFKPLTLEIQIERLRKICENESVSIDDAALSSLISFCDGDLRRAINTLQSAASFKDK 184
Query: 249 EGIV 252
+ I+
Sbjct: 185 KEII 188
>gi|332796204|ref|YP_004457704.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
gi|332693939|gb|AEE93406.1| DNA replication factor C, small subunit [Acidianus hospitalis W1]
Length = 326
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 131/326 (40%), Positives = 197/326 (60%), Gaps = 16/326 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+++DD++ Q+++V LK+ + ++PH LF GPPGTGKT+ +A H L+G
Sbjct: 5 ILWAEKYRPRSLDDIVNQKDIVERLKRFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYG 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y + LELNASD+RGI VIR+KVK FA+ S PFK+++LDEAD+MT
Sbjct: 65 DSYEQFFLELNASDERGIDVIRNKVKEFARTMVSS-------SVPFKVILLDEADNMTAD 117
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T+STRF L CNY+S II P+ SR + FRF PL + +++RL++I ++E
Sbjct: 118 AQQALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVVSRLEFIAKEE 177
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
V D KALET+ + + GDMR+AI LQ+ + + E V +V G+ + +L
Sbjct: 178 KVEYDEKALETIYDVTMGDMRKAINTLQAAS---AYGKVTIETVFKVLGLAQPKEVRDML 234
Query: 273 KV----DSFQVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECN 327
K+ + EK L+ S + Q H ++ + + ++ + L+++ + E
Sbjct: 235 KLALSGKFMEAREKLRSLLVTYGLSGEDIVKQLHRELTSNELQIPEELRVLLMDYIGEVE 294
Query: 328 ARLQDGASEYIQILD-LGSIVIKANK 352
R+ +GA + IQ+ L I I NK
Sbjct: 295 FRIIEGADDEIQLSALLAKIAIYGNK 320
>gi|326429717|gb|EGD75287.1| replication factor C subunit 5 [Salpingoeca sp. ATCC 50818]
Length = 330
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 138/327 (42%), Positives = 201/327 (61%), Gaps = 18/327 (5%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
+++S T N +PWVEKYRP ++D ++ +E++ +++ + LPH LFYGPPGTGKTS
Sbjct: 1 MTSSAPTTN--LPWVEKYRPDSLDQLVSHKEIIDTIQRFVDEKRLPHLLFYGPPGTGKTS 58
Query: 82 TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141
T+ A QL+G Y+ +LELNASDDRGI V+R+++KTFA T + F+ FK++
Sbjct: 59 TIKACAKQLYGKAYKSMVLELNASDDRGIGVVREQIKTFAS-TKTVFSAG------FKLI 111
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEAD+MT+ AQAALRR +EK TK TRFCLICNYVS I L SRC++FRF PLA M
Sbjct: 112 ILDEADAMTNDAQAALRRVIEKYTKHTRFCLICNYVSKISPALQSRCTRFRFAPLATEHM 171
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ ++Q + + E + +E LV+ + GDMR+A+ LQS + +E V TG
Sbjct: 172 IQQVQRVIDAEHIETTPAGIEALVKLASGDMRKALNILQST--FMAFNKVNDEGVYLCTG 229
Query: 262 VIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDI--VMSASSLSDKQK 316
IE +++V +SF+ + I ++ E A Q D HD+ + + +
Sbjct: 230 TPLPADIEAIVEVMLNESFKTAFRKIMEIKTEQGLALQ--DILHDVHEFIHRLDIPTASR 287
Query: 317 ALILEKLAECNARLQDGASEYIQILDL 343
L+L++LA+ RL GA+E Q+ DL
Sbjct: 288 LLLLDRLAQIEERLAYGANERAQLADL 314
>gi|126466118|ref|YP_001041227.1| replication factor C small subunit [Staphylothermus marinus F1]
gi|158513390|sp|A3DNV9.1|RFCS_STAMF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126014941|gb|ABN70319.1| replication factor C small subunit [Staphylothermus marinus F1]
Length = 329
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 139/312 (44%), Positives = 191/312 (61%), Gaps = 17/312 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+D++++Q+E+VS LK+ + ++PH LF GPPGTGKT+ H LFG+
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGEN 72
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI VIR KVK FA+ + PFKIV+LDEAD+MT AQ
Sbjct: 73 YRQYMLELNASDERGIDVIRSKVKEFARTRVAA-------NIPFKIVLLDEADNMTADAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T +TRF LI NY S II+P+ SRC+ FRF PL + +++RL++I EQE V
Sbjct: 126 QALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKV 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLK 273
D +ALE + + S GDMRRAI LQ+ A L G V D V +V G+ I ++++
Sbjct: 186 EIDEEALEAIHDLSEGDMRRAINILQAAAAL----GKVTVDSVYKVVGLAHPREIRQMIQ 241
Query: 274 V----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNA 328
+ + EK E +I S + Q H + S + D+ K +I + E
Sbjct: 242 LALAGNFNDAREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQF 301
Query: 329 RLQDGASEYIQI 340
RL +GA + IQ+
Sbjct: 302 RLVEGADDEIQL 313
>gi|407847432|gb|EKG03143.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 136/324 (41%), Positives = 195/324 (60%), Gaps = 16/324 (4%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST ++ +PWVEKYRP T+D+V+ ++++S ++ + +LPH LFYGPPGTGKT+T
Sbjct: 8 STGHAAKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTT 67
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP---- 137
+ A + LFG D R +LE+NASDDRGI V+R +V+ FA + S F P P
Sbjct: 68 IKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFA--STSSFYFASTPAAPTIAA 125
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
FK+VILDEAD M+ AQAALRR +EK TK+ RFC++CN+++ II L SRC++FRF P+
Sbjct: 126 FKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVK 185
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ ML+RL+++ ++E V + L S GD+RR + LQ+ A + GE I E V
Sbjct: 186 KSAMLSRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTLQASA-MSAGE-ITEESVY 243
Query: 258 EVTGVIPNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLS 312
VTG P P +E ++ D EK + + + S+T L + H IVM A L
Sbjct: 244 RVTGN-PTPADVRGIVEDMIAHDFAASWEKVHQIVSEKGVSSTDLVREVHHIVM-AMDLP 301
Query: 313 DKQKALILEKLAECNARLQDGASE 336
+ K +L KLA+ GA E
Sbjct: 302 QESKCFLLMKLADVEYYAAGGAKE 325
>gi|11499642|ref|NP_070884.1| replication factor C small subunit [Archaeoglobus fulgidus DSM
4304]
gi|42559325|sp|O28219.1|RFCS_ARCFU RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=afRFC small subunit; Short=afRFCsm
gi|110590966|pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
gi|110590967|pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
gi|110590968|pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
gi|110590969|pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
gi|110590970|pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
gi|110590971|pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
gi|110590972|pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
gi|110590973|pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
gi|110590974|pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
gi|2648471|gb|AAB89191.1| activator 1, replication factor C, 35 KD subunit [Archaeoglobus
fulgidus DSM 4304]
Length = 319
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 134/311 (43%), Positives = 192/311 (61%), Gaps = 16/311 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+T+D+V+ Q EV+ LK + ++PH LF GPPGTGKT+T IA LFG+
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ +E+NASD+RGI V+R K+K FA+ G PFKI+ LDEAD++T AQ
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG-------GAPFKIIFLDEADALTADAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +KS RF L CNYVS II+P+ SRC+ FRFKP+ + M RL ICE+E V
Sbjct: 120 AALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
LE L+ SGGD R+AI LQ A + GE + + + ++T + +L++
Sbjct: 180 KITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATARPEEMTELIQT 237
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQ-FHDIVMSASSLSDKQKALILEKLAECNAR 329
+F + ++ L++E S + Q F +I+ + + D K +++KL E + R
Sbjct: 238 ALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREII--SMPIKDSLKVQLIDKLGEVDFR 295
Query: 330 LQDGASEYIQI 340
L +GA+E IQ+
Sbjct: 296 LTEGANERIQL 306
>gi|345329292|ref|XP_001513440.2| PREDICTED: replication factor C subunit 4-like [Ornithorhynchus
anatinus]
Length = 287
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 123/221 (55%), Positives = 160/221 (72%), Gaps = 3/221 (1%)
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
GKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLICNYVS II+PLTSRCSKF
Sbjct: 61 GKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRCSKF 120
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
RFKPL++ RL I E+E V + + LV+ S GD+R+AIT LQS RL GG+ +
Sbjct: 121 RFKPLSDKIQHQRLLDISEKEKVKISSEGIAYLVQVSEGDLRKAITFLQSATRLTGGKEV 180
Query: 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA 308
+ + E+ GV+P I+ + SF+ LE ++DLI E ++ATQL +Q HD+V+
Sbjct: 181 TEKVITEIAGVVPAETIDGIFSACQSGSFEKLEAVVKDLINEGHAATQLVNQLHDVVVEK 240
Query: 309 SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 241 DHLSDKQKSVITEKLAEVDKCLADGADEHLQLISLCATVMQ 281
>gi|403160320|ref|XP_003320851.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375169507|gb|EFP76432.2| replication factor C subunit 3/5 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 352
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 146/360 (40%), Positives = 212/360 (58%), Gaps = 32/360 (8%)
Query: 11 GKDAPSSSKTSVSTSGKTR---NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLP 67
GK + ++ +G ++ + +PWVEKYRP T+DDV+ Q+++ ++K +S LP
Sbjct: 4 GKGKEIGKQPEIAANGASKPASKEHLPWVEKYRPSTLDDVVSHQDIIQTIQKFISANQLP 63
Query: 68 HFLFYGPPGTGKTSTMIAACHQLFGD--MYRERILELNASDDRGIQVIRDKVKTFAQQTA 125
H LFYGPPGTGKTST++A QLF ++ ILELNASDDRGI V+R+++K FA +A
Sbjct: 64 HLLFYGPPGTGKTSTILAVARQLFQTPMSFKNNILELNASDDRGIDVVREQIKNFA--SA 121
Query: 126 SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
G FK++ILDEAD MT AAQ+ALRR +E+ TK+ RFC+ICNYV+ I +
Sbjct: 122 RMVFSSG-----FKLIILDEADQMTQAAQSALRRVIEQYTKNVRFCIICNYVNRINPAIQ 176
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
SRC++FRF PL + R+ ++ + ESV + L+ GDMRR + +Q+C
Sbjct: 177 SRCTRFRFGPLDHPEIERRIAHVADAESVKISDDGRKALLNLCKGDMRRVLNVMQAC--- 233
Query: 246 KGGEGIVNED-VLEVTGVIPNP-WIEKLLKV---DSFQVLEKYIEDLILEAYSATQ---- 296
G G V+ED V E TG P+P IEK+++ D FQ K I+D+ + A Q
Sbjct: 234 HSGYGKVDEDAVYECTGS-PHPKQIEKIVESMMNDEFQTSFKRIQDIKINYGLALQDIIS 292
Query: 297 -LFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD-LGSIVIKANKTA 354
++D IV ++ + IL++L++ RL GA+E IQ+ LGS I T+
Sbjct: 293 GIYDYLRTIVFEKNA-----QIYILDQLSQIEHRLSTGATEKIQLSSLLGSFRIAVEITS 347
>gi|440801293|gb|ELR22313.1| Replication factor C protein [Acanthamoeba castellanii str. Neff]
Length = 296
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/332 (38%), Positives = 194/332 (58%), Gaps = 50/332 (15%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
+S +G R +PWVEKYRPK +DDV Q+EVV LKK L +LPH L YGPPGTGKTS
Sbjct: 5 LSFAGAKRAAKIPWVEKYRPKKVDDVAHQEEVVRALKKSLDTGNLPHLLLYGPPGTGKTS 64
Query: 82 TMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
T +A H+L+G ++++ R++ELNASD+RGI VIR KVK+F+Q + + +G+
Sbjct: 65 TALAIGHELYGPELFKTRVMELNASDERGINVIRSKVKSFSQVATAAASYNGRQ------ 118
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
II PL SRC+KFRF+PL +T
Sbjct: 119 ---------------------------------------IIDPLASRCAKFRFRPLEGDT 139
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260
M +L IC QE++ +AL T+V SGGD+R+AIT LQS + L + + + ++EV
Sbjct: 140 MGDKLVAICSQENLHITEEALRTVVSISGGDLRKAITTLQSVSSLYDEKEVTEDAIVEVA 199
Query: 261 GVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 317
GVIP +++L+ SF L+ + D+ ++ YS+ + Q HD ++ A +LS+KQKA
Sbjct: 200 GVIPPKKVDRLMDACASGSFFRLQSAVTDMTMDGYSSALVLSQMHDRIVDA-ALSNKQKA 258
Query: 318 LILEKLAECNARLQDGASEYIQILDLGSIVIK 349
I+++LA + L D A E++Q+ D+ + +++
Sbjct: 259 EIMKRLAAADQALVDSADEFLQLFDVCAFMMR 290
>gi|227830342|ref|YP_002832122.1| replication factor C small subunit [Sulfolobus islandicus L.S.2.15]
gi|229579159|ref|YP_002837557.1| replication factor C small subunit [Sulfolobus islandicus
Y.G.57.14]
gi|284997767|ref|YP_003419534.1| replication factor C [Sulfolobus islandicus L.D.8.5]
gi|227456790|gb|ACP35477.1| Replication factor C [Sulfolobus islandicus L.S.2.15]
gi|228009873|gb|ACP45635.1| Replication factor C [Sulfolobus islandicus Y.G.57.14]
gi|284445662|gb|ADB87164.1| Replication factor C [Sulfolobus islandicus L.D.8.5]
Length = 330
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 195/326 (59%), Gaps = 16/326 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+T+DD++ Q+E++ LKK + ++PH LF GPPGTGKT+ +A H L+G
Sbjct: 8 ILWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALVHDLYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y E LELNASD+RGI VIR+KVK FA+ PFK+V+LDEAD+MT
Sbjct: 68 DNYVEYFLELNASDERGIDVIRNKVKEFARTVIPS-------NVPFKVVLLDEADNMTAD 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL YI + E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
D KALET+ + + GDMR++I LQ+ + I E V +V G+ + +++
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQAAS---AYGKISVEAVFKVLGLAQPKEVREMI 237
Query: 273 KV---DSF-QVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECN 327
+ F Q EK L+ S + Q H +I S +S++ + L+L+ + E
Sbjct: 238 SLALQGKFTQAREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETE 297
Query: 328 ARLQDGASEYIQILD-LGSIVIKANK 352
R+ +GA + IQ+ L + I NK
Sbjct: 298 FRIIEGADDEIQLSALLAKMAIYGNK 323
>gi|32451662|gb|AAH54598.1| Rfc4 protein [Danio rerio]
Length = 202
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/179 (65%), Positives = 144/179 (80%), Gaps = 1/179 (0%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKC 60
M+AFL+ +S S+ G+ + + VPWVEKYRPK +D+V Q+EVV+VLKK
Sbjct: 1 MQAFLKGSSSQSVKAQKPSSSSSSGGEKKQRAVPWVEKYRPKCVDEVAFQEEVVAVLKKS 60
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
L GADLP+ LFYGPPGTGKTST++AA +L+G D+YR+R+LELNASD+RGIQV+R+KVK
Sbjct: 61 LEGADLPNLLFYGPPGTGKTSTILAAARELYGPDLYRQRVLELNASDERGIQVVREKVKR 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
FAQ T +G DGK CPPFKI+ILDEADSMT AAQAALRRTMEKE+++TRFCLICNYVS
Sbjct: 121 FAQLTVAGTRPDGKTCPPFKIIILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVS 179
>gi|237839531|ref|XP_002369063.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|211966727|gb|EEB01923.1| replication factor C small subunit, putative [Toxoplasma gondii
ME49]
gi|221483291|gb|EEE21610.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii GT1]
gi|221507780|gb|EEE33367.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Toxoplasma gondii VEG]
Length = 357
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 197/318 (61%), Gaps = 7/318 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP+ ++D+ Q E +L++ L ++PH LFYGPPGTGKTS +A +LFG
Sbjct: 31 VPWVEKYRPRRVEDMAHQVEPKKMLRRILETGNMPHLLFYGPPGTGKTSAALALVRELFG 90
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASG-FN-QDGKPCPPFKIVILDEADS 148
+ + R+LELNASDDRGI+V+R+++K + + A G N + G+ P +KIVILDEAD
Sbjct: 91 REEAKNRLLELNASDDRGIKVVRERIKQYTKTNIAKGKINPETGREMPTWKIVILDEADM 150
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ+ALRR ME +++TRF +ICNYV II P+ SRCS RF+P+A + R+++I
Sbjct: 151 MTQDAQSALRRIMEAFSRTTRFIIICNYVHRIIDPIFSRCSPHRFEPVARDAQEARIRHI 210
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
C+ E ++ A++ L+ S GD+RRA+T LQS A + + + + +LEV G P +
Sbjct: 211 CDSEGLVVTSGAVDALLRISQGDLRRAVTLLQSAASIY-DDNLHEDAILEVAGQPPARIV 269
Query: 269 EKLLKV--DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
L+ S ++++I + + L + V+ + L D QKA ++ +A+
Sbjct: 270 TDFLRACQASPSQASSEVDNVISQGWDVCLLLQEMIRQVVVSPHLKDLQKARVINDIAQK 329
Query: 327 NARLQDGASEYIQILDLG 344
+ GAS Y+Q+L L
Sbjct: 330 EFAVFQGASPYLQLLSLS 347
>gi|300121957|emb|CBK22531.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 192/313 (61%), Gaps = 8/313 (2%)
Query: 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103
+DDV Q+E ++ L++ + +LPH LFYGPPGTGKTST++A H+LFG +R+LE+N
Sbjct: 1 MDDVSHQEEALNALRRSVKEGNLPHLLFYGPPGTGKTSTILALTHELFGPDLSDRVLEMN 60
Query: 104 ASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEK 163
ASD+RGI VIR+KV FA+Q+ + G P PP+KI+I+DEADS+T AQ+ALRR ME+
Sbjct: 61 ASDERGIDVIREKVILFARQSVRQ-SIPGYPSPPYKIIIMDEADSLTMDAQSALRRVMEQ 119
Query: 164 ETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALET 223
++ TRFC ICNY+S II L+SRC++F F L ++L RL +IC +E + + +AL+
Sbjct: 120 YSRVTRFCFICNYISKIIPALSSRCARFEFGALPRGSVLERLSFICGEEKIEIENEALDF 179
Query: 224 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----W--IEKLLKVDS 276
+ + S GD+R I LQ+ + G+ I +D+ +T IP W +E K S
Sbjct: 180 IFDHSRGDLRAGIQLLQNAETVNRGKKITVKDLESITLNIPKTVLFRLWDTMEATKKASS 239
Query: 277 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 336
L + ++ + ++ Y + L D V+ LSD QKA I LA + DG E
Sbjct: 240 IAKLRQVVDAICMDGYPVSALLSVISDRVVGDEKLSDAQKAEIALILANADKATVDGCDE 299
Query: 337 YIQILDLGSIVIK 349
+ +LD+ ++K
Sbjct: 300 ELTLLDVCCSIVK 312
>gi|71413122|ref|XP_808715.1| replication factor C, subunit 3 [Trypanosoma cruzi strain CL
Brener]
gi|70872975|gb|EAN86864.1| replication factor C, subunit 3, putative [Trypanosoma cruzi]
Length = 355
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 134/324 (41%), Positives = 194/324 (59%), Gaps = 16/324 (4%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST ++ +PWVEKYRP T+D+V+ ++++S ++ + +LPH LFYGPPGTGKT+T
Sbjct: 8 STGHAAKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTT 67
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP---- 137
+ A + LFG D R +LE+NASDDRGI V+R +V+ F+ + S F P P
Sbjct: 68 IKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFS--STSSFYFASAPAAPTIAA 125
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
FK+VILDEAD M+ AQAALRR +EK TK+ RFC++CN+++ II L SRC++FRF P+
Sbjct: 126 FKLVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVK 185
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ ML RL+++ ++E V + L S GD+RR + +Q+ A + GE I E V
Sbjct: 186 KSAMLPRLKFVAQEEGVRFTDEGLVAAFRLSNGDLRRCLNTMQASA-MSAGE-ITEESVY 243
Query: 258 EVTGVIPNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLS 312
VTG P P +E ++ D EK + + + S+T L + H IVM A L
Sbjct: 244 RVTGN-PTPADVRGIVEDMIAHDFAASWEKVQQTVSEKGVSSTDLVREVHHIVM-AMDLP 301
Query: 313 DKQKALILEKLAECNARLQDGASE 336
+ K +L KLA+ GA E
Sbjct: 302 QESKCFLLMKLADVEYYAAGGAKE 325
>gi|71021079|ref|XP_760770.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
gi|46100247|gb|EAK85480.1| hypothetical protein UM04623.1 [Ustilago maydis 521]
Length = 341
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 133/316 (42%), Positives = 191/316 (60%), Gaps = 14/316 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DD++ +++ S ++ + LPH LFYGPPGTGKTST++A ++FG
Sbjct: 22 LPWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFG 81
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+R +LELNASDDRGI V+R+++K+FA T S F+ G FK+++LDEAD+MT A
Sbjct: 82 PQFRNSVLELNASDDRGIDVVREQIKSFA-STKSVFSSKGG----FKLIVLDEADAMTQA 136
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + + RL ++ E E
Sbjct: 137 AQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIESE 196
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKL 271
E L++ S GDMRRA+ LQ+C + I V TG P+P IE +
Sbjct: 197 GCNITQDGKEALLKLSRGDMRRALNVLQACH--AASDHIDETAVYNCTGN-PHPHDIEAI 253
Query: 272 LKV---DSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
LK D F + L + + + F+D+ ++ L K + +L+ LA+
Sbjct: 254 LKSMMEDEFTTAFWTVSQLKTAKGIALADIITGFYDL-LTTIKLPAKSRIYLLDHLADTE 312
Query: 328 ARLQDGASEYIQILDL 343
RL G SE IQ+ L
Sbjct: 313 HRLSTGGSEKIQLTAL 328
>gi|343425514|emb|CBQ69049.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 342
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 193/316 (61%), Gaps = 14/316 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DD++ +++ S ++ + LPH LFYGPPGTGKTST++A ++FG
Sbjct: 23 LPWVEKYRPATLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGKTSTILAMARKIFG 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+R +LELNASDDRGI+V+R+++K+FA T S F+ G FK+++LDEAD+MT A
Sbjct: 83 PQFRNSVLELNASDDRGIEVVREQIKSFA-STKSVFSSKGG----FKLIVLDEADAMTQA 137
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + + RL ++ + E
Sbjct: 138 AQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLELDQVEDRLNHVIDTE 197
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKL 271
E L++ S GDMRRA+ LQ+C + I V TG P+P +E +
Sbjct: 198 GCKITQDGKEALLKLSRGDMRRALNVLQACH--AASDNIDETAVYNCTGN-PHPQDVEAV 254
Query: 272 LKV---DSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
LK D F + + +L + + + +D+ ++ L K + +L+ LA+
Sbjct: 255 LKSMMEDEFTTAFRTVSELKTAKGIALADMISGVYDL-LATIKLPAKSRIYLLDHLADTE 313
Query: 328 ARLQDGASEYIQILDL 343
RL G SE IQ+ L
Sbjct: 314 HRLSTGGSEKIQLTAL 329
>gi|407408177|gb|EKF31712.1| replication factor C, subunit 3, putative [Trypanosoma cruzi
marinkellei]
Length = 355
Score = 243 bits (621), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 191/322 (59%), Gaps = 12/322 (3%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST ++ +PWVEKYRP T+D+V+ ++++S ++ + +LPH LFYGPPGTGKT+T
Sbjct: 8 STVHTVKSSTLPWVEKYRPVTLDEVVAHEDILSTTRRLMDSGNLPHLLFYGPPGTGKTTT 67
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD--GKPCPPFK 139
+ A + LFG D R +LE+NASDDRGI V+R +V+ FA ++ F FK
Sbjct: 68 IKACAYYLFGKDRIRANVLEMNASDDRGIDVVRQQVREFASTSSFYFASAPAASTIAAFK 127
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
+VILDEAD M+ AQAALRR +EK TK+ RFC++CN+++ II L SRC++FRF P+ +N
Sbjct: 128 LVILDEADQMSGDAQAALRRIIEKYTKNVRFCILCNHINKIIPALQSRCTRFRFAPVKKN 187
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
ML RL+++ ++E V L S GD+RR + +Q+ A + GE I E V V
Sbjct: 188 AMLPRLKFVAQEEGVRFTDGGLVAAFRLSNGDLRRCLNTMQASA-MSAGE-ITEESVYRV 245
Query: 260 TGVIPNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 314
TG P P +E ++ D EK + + + S+T L + H IVM A L +
Sbjct: 246 TGN-PTPADVRGIVEDMIAHDFAASWEKVQQTVSEKGVSSTDLVREVHHIVM-AMDLPQE 303
Query: 315 QKALILEKLAECNARLQDGASE 336
K +L KLA+ GA E
Sbjct: 304 SKCFLLMKLADVEYYAAGGAKE 325
>gi|320100775|ref|YP_004176367.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
gi|319753127|gb|ADV64885.1| replication factor C small subunit [Desulfurococcus mucosus DSM
2162]
Length = 347
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 187/311 (60%), Gaps = 15/311 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+T+D+V+ Q+E+V LKK + +PH LF GPPGTGKT+ H L+GD
Sbjct: 30 WAEKYRPRTLDEVVNQKEIVVRLKKFVEEKSIPHMLFAGPPGTGKTTMAHCLAHDLYGDD 89
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
Y++ +LELNASD+R I+VIR KVK FA+ G PFKIV+LDEAD+MT AQ
Sbjct: 90 YKKYMLELNASDERKIEVIRGKVKEFARSRVVG-------EVPFKIVLLDEADNMTADAQ 142
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + +TRF L NY S II+P+ SR + FRF PL + ++ RL+YIC E V
Sbjct: 143 QALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLRKEDVVERLRYICNAEKV 202
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
CD +ALET+ E S GDMRRAI LQ+ A L GE +V E V +V G+ + ++L
Sbjct: 203 KCDERALETIYELSEGDMRRAINILQTTAAL--GE-VVEEAVYKVIGLAHPREVREMLNE 259
Query: 274 --VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNAR 329
+F + L++E S + Q H + S + D+ + LI + E R
Sbjct: 260 ALSGNFTEARNKLRTLMIEYGLSGVDIIRQIHKEIFSQEVKIPDEMRVLIADLAGEIQFR 319
Query: 330 LQDGASEYIQI 340
L +GA + IQ+
Sbjct: 320 LVEGADDEIQL 330
>gi|297527205|ref|YP_003669229.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
gi|297256121|gb|ADI32330.1| Replication factor C [Staphylothermus hellenicus DSM 12710]
Length = 329
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 137/312 (43%), Positives = 189/312 (60%), Gaps = 17/312 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+D+++ Q+E+VS LK+ + ++PH LF GPPGTGKT+ H LFG+
Sbjct: 13 WAEKYRPKTLDEIVNQEEIVSRLKRFVQERNMPHLLFAGPPGTGKTTAAHCLAHDLFGEN 72
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI VIR KVK FA+ + PFKIV+LDEAD+MT AQ
Sbjct: 73 YRQYMLELNASDERGIDVIRSKVKEFARTRVTA-------NIPFKIVLLDEADNMTADAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T +TRF LI NY S II+P+ SRC+ FRF PL + +++RL++I QE V
Sbjct: 126 QALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIANQEKV 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLK 273
D +ALE + + S GDMRRAI LQ+ A L G V D V +V G+ I ++++
Sbjct: 186 EVDEEALEAIHDLSEGDMRRAINILQAAAAL----GRVTVDSVYKVVGLAHPREIRQMIQ 241
Query: 274 V----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNA 328
+ + EK + +I S + Q H + S + D+ K +I + E
Sbjct: 242 LALAGNFTDAREKLRKLMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQF 301
Query: 329 RLQDGASEYIQI 340
RL +GA + IQ+
Sbjct: 302 RLVEGADDEIQL 313
>gi|390938548|ref|YP_006402286.1| replication factor C [Desulfurococcus fermentans DSM 16532]
gi|390191655|gb|AFL66711.1| Replication factor C [Desulfurococcus fermentans DSM 16532]
Length = 326
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 187/311 (60%), Gaps = 15/311 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+T+D+V+ Q+EVV LKK + ++PH LF GPPGTGKT+ H L+GD
Sbjct: 9 WAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+R I+VIR KVK FA+ G PFKIV+LDEAD+MT AQ
Sbjct: 69 YRKYMLELNASDERKIEVIRGKVKEFARARVVG-------DVPFKIVLLDEADNMTADAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + +TRF L NY S II+P+ SR + FRF PL+ ++ RL+YIC E +
Sbjct: 122 QALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAEKI 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
C KALET+ E S GDMRRAI LQ+ A L GE +V E V +V G+ + +++
Sbjct: 182 ECAEKALETIYELSEGDMRRAINILQTAAAL--GE-VVEEAVYKVLGMAHPREVREMINT 238
Query: 274 --VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNAR 329
+F + L++E S + Q H + S + D+ + LI + E R
Sbjct: 239 ALAGNFTEARNKLRTLMIEYGLSGLDIVKQIHREIFSQDVKIPDEIRVLIADLAGEIQFR 298
Query: 330 LQDGASEYIQI 340
L +GA + IQ+
Sbjct: 299 LVEGADDEIQL 309
>gi|218884000|ref|YP_002428382.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
gi|218765616|gb|ACL11015.1| replication factor C small subunit [Desulfurococcus kamchatkensis
1221n]
Length = 326
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/311 (44%), Positives = 187/311 (60%), Gaps = 15/311 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+T+D+V+ Q+EVV LKK + ++PH LF GPPGTGKT+ H L+GD
Sbjct: 9 WAEKYRPRTLDEVVNQKEVVVRLKKFVEEKNIPHMLFAGPPGTGKTTIAHCLAHDLYGDD 68
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+R I+VIR KVK FA+ G PFKIV+LDEAD+MT AQ
Sbjct: 69 YRKYMLELNASDERKIEVIRGKVKEFARTRVVG-------DVPFKIVLLDEADNMTADAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + +TRF L NY S II+P+ SR + FRF PL+ ++ RL+YIC E +
Sbjct: 122 QALRRLMELYSATTRFILTANYPSKIIEPIQSRTAIFRFSPLSREDVVGRLKYICNAEKI 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
C KALET+ E S GDMRRAI LQ+ A L GE +V E V +V G+ + +++
Sbjct: 182 ECAEKALETIYELSEGDMRRAINILQTAAAL--GE-VVEEAVYKVLGMAHPREVREMINT 238
Query: 274 --VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNAR 329
+F + L++E S + Q H + S + D+ + LI + E R
Sbjct: 239 ALAGNFTEARNKLRTLMIEYGLSGLDIVKQIHREIFSQDVKIPDEIRVLIADLAGEIQFR 298
Query: 330 LQDGASEYIQI 340
L +GA + IQ+
Sbjct: 299 LVEGADDEIQL 309
>gi|145498359|ref|XP_001435167.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124402297|emb|CAK67770.1| unnamed protein product [Paramecium tetraurelia]
Length = 340
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 205/329 (62%), Gaps = 10/329 (3%)
Query: 26 GKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
G +NK +PW+EKYRP T+D+VI +E+V+ +KK LP+ L YGPPGTGKTST+IA
Sbjct: 8 GNKKNKNIPWIEKYRPSTLDEVISHEEIVATIKKFNEKNRLPNLLLYGPPGTGKTSTIIA 67
Query: 86 ACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
Q++ + Y + +LELNASD+RGI +R+ +K FA+ + F +D K+VILDE
Sbjct: 68 LAKQIYQNKYNQMVLELNASDERGINTVRETIKGFAESQSFTFTKDKN--TSIKLVILDE 125
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AAQ ALRR +EK K+TRFC ICN++S II + SRC++F+FK ++ + +R+
Sbjct: 126 ADAMTAAAQFALRRIIEKYAKTTRFCFICNHISQIIPAIQSRCTRFKFKQISLDVASSRI 185
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITC---LQSCARLKGGEGIVNEDVLEVTGV 262
+YICE ES+ + +A++++ E GDMRR + L E I ++ V + TG+
Sbjct: 186 KYICENESIPLNEQAIKSVFELCSGDMRRVVNMLQSLSLSTSNSNLEVINSQYVYQFTGM 245
Query: 263 IPNPWIEKLLK--VDSFQVLEKYIE-DLIL--EAYSATQLFDQFHDIVMSASSLSDKQKA 317
I+++++ ++ ++ + Y++ IL + S L + ++ + L+DKQK
Sbjct: 246 AHPDLIKQIMEYLMNQSEIQKTYLKIKTILNEQGISLQLLLTELSTQLLGLNVLNDKQKC 305
Query: 318 LILEKLAECNARLQDGASEYIQILDLGSI 346
++E++AE RL ++ +Q+L L I
Sbjct: 306 NVIERMAELEYRLSICCNDQVQLLSLIGI 334
>gi|30913228|sp|O74111.1|RFC3_ARXAD RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 subunit 3
gi|3367626|emb|CAA07618.1| replication factor C subunit [Blastobotrys adeninivorans]
Length = 338
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 139/333 (41%), Positives = 191/333 (57%), Gaps = 34/333 (10%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
V T K N +PWVEKYRP T+D+V + V++ +KK + LPH LF+GPPGTGKT+
Sbjct: 7 VETVEKQENS-LPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTT 65
Query: 82 TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPF 138
T+IA Q++G YR ILELNASD+RGI V+RD++KTFA Q +SG F
Sbjct: 66 TIIAVARQIYGKNYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG----------F 115
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
K+VILDEAD+MT+AAQ ALRR +EK + TRFC++ NY + L SRC++FRF PL E
Sbjct: 116 KLVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKE 175
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVL 257
+ + RL ++ EQESV +A ++L+ S GDMRRA+ LQ+C A + GE I E V
Sbjct: 176 DAIKHRLAHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVY 235
Query: 258 EVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS---------- 307
+ G P P D VL+ ++ A Q + ++
Sbjct: 236 DCVGS-PRP-------ADIRTVLQAVLDGSWESALHTFSYIKQSKGLALADMLTAFAVEF 287
Query: 308 -ASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
L +K + +L+ L+E RL G +E IQ
Sbjct: 288 QKLDLQNKTRIALLDGLSEIEWRLSSGGNESIQ 320
>gi|307596342|ref|YP_003902659.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307551543|gb|ADN51608.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 342
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 132/311 (42%), Positives = 183/311 (58%), Gaps = 14/311 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP IDD+I+Q+EV +K+ L ++PH LFYGPPGTGKT+ +A +L+GD
Sbjct: 8 WVEKYRPSRIDDIIDQEEVKERIKQFLKTGNMPHMLFYGPPGTGKTTMALAIARELYGDA 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE +LELNASD+RGI IR++VK FA+ G P+K+VILDEAD+MT AQ
Sbjct: 68 WRENVLELNASDERGITTIRERVKEFARTAPMG-------KAPYKLVILDEADNMTSDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME TRF LI NYVS II P+ SRC+ FRF PL ++ +L RL+ I +E V
Sbjct: 121 QALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLREIASKEGV 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
+ALE + + S GDMR+AI LQ+ A + I E + + G I I L+
Sbjct: 181 KVTNEALEAIWDVSQGDMRKAINTLQAAA--ATAKEITPEVIYKTVGYIEPKDIVDLVNT 238
Query: 275 ----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNAR 329
D + +K + S T++ +M + ++ D+ K I E A+ + R
Sbjct: 239 VFSGDFVKARDKLRTLMYEHGVSGTEILRAIQRQIMGGAINVPDEAKVEIAEAAADIDYR 298
Query: 330 LQDGASEYIQI 340
L +G+ E IQ+
Sbjct: 299 LTEGSDEEIQL 309
>gi|229582086|ref|YP_002840485.1| replication factor C small subunit [Sulfolobus islandicus
Y.N.15.51]
gi|228012802|gb|ACP48563.1| Replication factor C [Sulfolobus islandicus Y.N.15.51]
Length = 330
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 194/326 (59%), Gaps = 16/326 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+T+DD++ Q+E++ LKK + ++PH LF GP GTGKT+ +A H L+G
Sbjct: 8 ILWAEKYRPRTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPSGTGKTTAALALVHDLYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y E LELNASD+RGI VIR+KVK FA+ PFK+V+LDEAD+MT
Sbjct: 68 DNYVEYFLELNASDERGIDVIRNKVKEFARTVIPS-------NVPFKVVLLDEADNMTAD 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL YI + E
Sbjct: 121 AQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLVYIAKNE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
D KALET+ + + GDMR++I LQ+ + I E V +V G+ + +++
Sbjct: 181 KAEYDQKALETIYDITMGDMRKSINILQAAS---AYGKISVEAVFKVLGLAQPKEVREMI 237
Query: 273 KV---DSF-QVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECN 327
+ F Q EK L+ S + Q H +I S +S++ + L+L+ + E
Sbjct: 238 SLALQGKFTQAREKLRTLLVTYGLSGEDIIKQIHREITSSELQISEELRVLLLDYIGETE 297
Query: 328 ARLQDGASEYIQILD-LGSIVIKANK 352
R+ +GA + IQ+ L + I NK
Sbjct: 298 FRIIEGADDEIQLSALLAKMAIYGNK 323
>gi|325968175|ref|YP_004244367.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
gi|323707378|gb|ADY00865.1| replication factor C small subunit [Vulcanisaeta moutnovskia
768-28]
Length = 338
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 133/311 (42%), Positives = 183/311 (58%), Gaps = 14/311 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP IDD+I+Q+EV +K+ L ++PH LFYGPPGTGKT+ +A +L+GD
Sbjct: 8 WVEKYRPSRIDDIIDQEEVKERVKQLLKTGNMPHMLFYGPPGTGKTTMALAIARELYGDA 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE +LELNASD+RGI IR++VK FA+ G P+K++ILDEAD+MT AQ
Sbjct: 68 WRENVLELNASDERGITTIRERVKEFARTAPMG-------KAPYKLIILDEADNMTSDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME TRF LI NYVS II P+ SRC+ FRF PL ++ +L RL+ I +E V
Sbjct: 121 QALRRMMEMYANVTRFILIANYVSRIIDPIQSRCAMFRFSPLPKDAVLGRLRDIASREGV 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
+ALE + + S GDMR+AI LQ+ I E V + G I I L+ +
Sbjct: 181 KVTDEALEAIWDISQGDMRKAINTLQAAT--ATAREITPEVVYKTVGYIEPKDIVDLVNI 238
Query: 275 ----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS-ASSLSDKQKALILEKLAECNAR 329
D + +K + S T++ +MS A ++ D+ K I E A+ + R
Sbjct: 239 ALNGDFIRARDKLRTLMYEHGVSGTEILRVIQRQIMSGAINVPDEAKVEIAETAADIDYR 298
Query: 330 LQDGASEYIQI 340
L +G+ E IQ+
Sbjct: 299 LTEGSDEEIQL 309
>gi|15988297|pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988298|pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988299|pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988300|pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988301|pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
gi|15988302|pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 185/311 (59%), Gaps = 14/311 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q+ +V LK + +PH LF GPPG GKT+ +A +LFG+
Sbjct: 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD+RGI VIR+KVK FA+ G FKI+ LDEAD++T A
Sbjct: 74 NWRHNFLELNASDERGINVIREKVKEFARTKPIG-------GASFKIIFLDEADALTQDA 126
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME + + RF L CNY S II+P+ SRC+ FRF+PL + + RL+YI E E
Sbjct: 127 QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG 186
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL-- 271
+ + L+ ++ + GDMRRAI LQ+ A L + I +E+V V I ++
Sbjct: 187 LELTEEGLQAILYIAEGDMRRAINILQAAAAL--DKKITDENVFMVASRARPEDIREMML 244
Query: 272 --LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
LK + + EK E L+ + S + Q H V + + + +K L+ +K+ E N R
Sbjct: 245 LALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL-PIEEPKKVLLADKIGEYNFR 303
Query: 330 LQDGASEYIQI 340
L +GA+E IQ+
Sbjct: 304 LVEGANEIIQL 314
>gi|330834115|ref|YP_004408843.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
gi|329566254|gb|AEB94359.1| replication factor C small subunit [Metallosphaera cuprina Ar-4]
Length = 325
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/317 (42%), Positives = 191/317 (60%), Gaps = 23/317 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+T+DD++ Q+++V LK+ + ++PH LF GPPGTGKT++ +A H L+G
Sbjct: 4 ILWAEKYRPRTLDDIVNQKDIVDRLKRFVKERNMPHLLFAGPPGTGKTTSALALVHDLYG 63
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ Y + LELNASD+ GI VIR KVK FA+ G PFK V+LDEAD+MT
Sbjct: 64 ENYDQFFLELNASDENGINVIRTKVKDFARTVTPG-------NVPFKTVLLDEADNMTSD 116
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T+STRF L CNY+S II P+ SR + FRF PL + ++ RL+ I ++E
Sbjct: 117 AQQALRRTMELYTESTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVILRLENILKEE 176
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKL 271
V D K+LE + + +GGDMR+AI LQ+ A G V D VL+V G+ I ++
Sbjct: 177 KVQYDVKSLEVVYDVTGGDMRKAINVLQAAA----AYGKVTTDSVLKVLGLAQPKEIREM 232
Query: 272 LK-------VDSFQVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKL 323
+K +DS L I D L S + Q H DI + + ++ + L+ + L
Sbjct: 233 VKLALQGKFLDSRSKLMSLIIDYGL---SGEDIVKQVHRDIFSNEYQIPEELRVLMSDYL 289
Query: 324 AECNARLQDGASEYIQI 340
E R+ +GA + IQ+
Sbjct: 290 GEVEFRIIEGADDEIQL 306
>gi|119719185|ref|YP_919680.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
gi|150415673|sp|A1RWU7.1|RFCS_THEPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|119524305|gb|ABL77677.1| replication factor C small subunit [Thermofilum pendens Hrk 5]
Length = 325
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 196/328 (59%), Gaps = 19/328 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+++D++++Q+E+V LK+ + ++PH LF GPPGTGKT+ +A H L+G+
Sbjct: 6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGES 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ LELNASD+RGI VIR ++K +A+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRDNTLELNASDERGIDVIRSRIKDYARTLPIG-------DVPFKLVILDEADNMTGDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRRTME +++TRF LI NY S II+P+ SRC+ FRF+PL + RL++I +QE +
Sbjct: 119 QALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGI 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP----NPWIEK 270
D ALE + E S GD+R+AI LQ+ + + + E V G + IE
Sbjct: 179 TVDDGALEAIWEESQGDLRKAINTLQAASAI--SRNVTEEVVYAALGRVKPKEVREMIES 236
Query: 271 LLKVDSFQVLEKYIEDLILEAY--SATQLFDQFHDIVMSASS--LSDKQKALILEKLAEC 326
LK + + +K L+L Y S + H V+S S L D A +L + E
Sbjct: 237 ALKGNLLEARDKL--RLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGET 294
Query: 327 NARLQDGASEYIQILDLGSIVIKANKTA 354
N R+ +G+ + IQ++ L S + +K A
Sbjct: 295 NYRIVEGSDDEIQLMALLSKLALVSKKA 322
>gi|388858041|emb|CCF48278.1| probable RFC3-DNA replication factor C, 40 kDa subunit [Ustilago
hordei]
Length = 343
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 132/316 (41%), Positives = 189/316 (59%), Gaps = 14/316 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++D++ +++ S ++ + LPH LFYGPPGTGKTST++A ++FG
Sbjct: 24 LPWVEKYRPATLEDLVSHKDITSTIQNFIDRNRLPHLLFYGPPGTGKTSTILAMARKIFG 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+R +LELNASDDRGI+V+R+++K FA T S F+ G FK+++LDEAD+MT A
Sbjct: 84 PQFRNSVLELNASDDRGIEVVREQIKGFA-STKSVFSSKGG----FKLIVLDEADAMTQA 138
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + + RL ++ E E
Sbjct: 139 AQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLQLDQVEDRLNHVIENE 198
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKL 271
E L++ S GDMRRA+ LQ+C + I V TG P+P IE +
Sbjct: 199 GCKITQDGKEALLKLSRGDMRRALNVLQACH--AASDHIDETAVYNCTGN-PHPSDIEAM 255
Query: 272 LKV---DSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
LK + F I L + + + +D+ ++ L K K +L+ LA
Sbjct: 256 LKSMMQEEFTTAYTTISGLKTAKGIALADMISGVYDL-LATIKLPAKSKIYLLDHLAHTE 314
Query: 328 ARLQDGASEYIQILDL 343
RL G SE IQ+ L
Sbjct: 315 HRLSTGGSEKIQLTAL 330
>gi|389845694|ref|YP_006347933.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|448616684|ref|ZP_21665394.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|388243000|gb|AFK17946.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
gi|445751339|gb|EMA02776.1| replication factor C small subunit [Haloferax mediterranei ATCC
33500]
Length = 330
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 128/309 (41%), Positives = 184/309 (59%), Gaps = 14/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DD+ Q+E+V L+ + DLPH LF GP G GKT++ A L+GD
Sbjct: 19 WIEKYRPQTLDDIYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARTLYGDD 78
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ S FN P + I+ LDEADS+T+ AQ
Sbjct: 79 WRGNFLELNASDERGIDVVRDRIKNFAR---SSFN----PERGYTIIFLDEADSLTNDAQ 131
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + TRF L CNY S II P+ SRC+ FRF PL ++ + + + I E E +
Sbjct: 132 SALRRTMEEFSDKTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQTRDIAEAEGI 191
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
L+ LV +GGDMRRAI LQ+ A GE + E V +T IEK+++
Sbjct: 192 ELTEGGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYLITSTARPEDIEKMVRA 249
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
F K +E LI++ + + DQ H V L ++ ++E++ E + R+
Sbjct: 250 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWDF-DLDERDAVHLMERIGEADYRI 308
Query: 331 QDGASEYIQ 339
+GA+E +Q
Sbjct: 309 SEGANEQVQ 317
>gi|337285093|ref|YP_004624567.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
gi|334901027|gb|AEH25295.1| Replication factor C, small subunit (rfcS) [Pyrococcus yayanosii
CH1]
Length = 326
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 128/311 (41%), Positives = 188/311 (60%), Gaps = 14/311 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q+ ++ LK + +PH LF GPPGTGKT++ +A +LFG+
Sbjct: 14 PWVEKYRPQRLDDIVGQEHIIKRLKHYVKTGSMPHLLFAGPPGTGKTTSALALARELFGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD+RGI VIR+KVK FA+ G FKI+ LDEAD++T A
Sbjct: 74 NWRHNFLELNASDERGINVIREKVKEFARTKPIG-------GASFKIIFLDEADALTQDA 126
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME + + RF L NY S II+P+ SRC+ FRF+PL++ + RL+YI EQE
Sbjct: 127 QQALRRTMEMFSNNVRFILSANYSSRIIEPIQSRCAIFRFRPLSDEDVAKRLKYIAEQEG 186
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL-- 271
+ + L+ ++ + GD+RRAI LQ+ A L + I +E+V V I ++
Sbjct: 187 LELTEEGLQAILYVAEGDLRRAINVLQAAAALD--KKITDENVFTVASRARPEDIREMML 244
Query: 272 --LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
L+ + + EK E L+ + S + Q H V + +S+ +K + +K+ E N R
Sbjct: 245 LALEGNFLKAREKLREILLKQGLSGEDVLIQMHREVFNL-PISEPKKVQLADKIGEYNFR 303
Query: 330 LQDGASEYIQI 340
L +GA+E IQ+
Sbjct: 304 LVEGANEMIQL 314
>gi|84998148|ref|XP_953795.1| replication factor C subunit (RPC2 ) [Theileria annulata]
gi|65304792|emb|CAI73117.1| replication factor C subunit (RPC2 homologue) , putative [Theileria
annulata]
Length = 336
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 195/320 (60%), Gaps = 15/320 (4%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K VPWVEKYRPK I DVI Q + VS++++ + ++PH +F+GPPGTGKTS +A Q+
Sbjct: 5 KDVPWVEKYRPKKISDVIFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQI 64
Query: 91 FG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN---QDGKPCPPFKIVILDEA 146
+G + RER+LELNASD+RGI V+RD++KT+ + S + + P +K++ILDEA
Sbjct: 65 YGLEGMRERVLELNASDERGIDVVRDRIKTYTRINISNNRVNPETNRVMPNYKMIILDEA 124
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D +T AQAALRR +E + +RF LICNY+ II P+ SRCS F FKP+ N+ + RL+
Sbjct: 125 DMITADAQAALRRVIENYSSISRFILICNYLHKIIGPIYSRCSVFHFKPIETNSQIDRLK 184
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQ----SCARLKGGEGIVNEDVLEVTGV 262
YIC QE + D K L T+ S GDMR++IT LQ S A L I + V+G
Sbjct: 185 YICNQEGITFDPKFLTTI---SSGDMRKSITILQVILGSTACLYN--EITENAIYSVSGK 239
Query: 263 IPNPWIEKLLKV--DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
P +E + +V +E + ++ + + + +F Q + V+ + S+ D +K+ I
Sbjct: 240 PPKRVVESIFEVCRRPEGDVESVCKQIVHDGWDISSIFQQICEYVVESDSIGDIEKSKIS 299
Query: 321 EKLAECNARLQDGASEYIQI 340
+LA + L G S+Y Q+
Sbjct: 300 LELANRDFALLQGGSQYFQL 319
>gi|443900350|dbj|GAC77676.1| replication factor C, subunit RFC5 [Pseudozyma antarctica T-34]
Length = 342
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 135/336 (40%), Positives = 199/336 (59%), Gaps = 17/336 (5%)
Query: 20 TSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
T ++S +PWVEKYRP T+DD++ +++ S ++ + LPH LFYGPPGTGK
Sbjct: 10 TDATSSAAPDQDLLPWVEKYRPVTLDDLVSHKDITSTIQNFIDKNRLPHLLFYGPPGTGK 69
Query: 80 TSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFK 139
TST++A +++G +R +LELNASD+RGI V+R+++K+FA T S F FK
Sbjct: 70 TSTILAMARKIYGAQFRNSVLELNASDERGIDVVREQIKSFA-STKSVFGAKAG----FK 124
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
+++LDEAD+MT AAQ ALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL +
Sbjct: 125 LIVLDEADAMTQAAQGALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFNPLEPD 184
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
+ +RLQ++ E E E L++ S GDMRRA+ LQ+C + I V
Sbjct: 185 QVESRLQHVIESEHCNITPGGKEALLKLSRGDMRRALNVLQACH--AASDHIDETAVYNC 242
Query: 260 TGVIPNPW-IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDI--VMSASSLSD 313
TG P+P IE +LK D F I + L+ L D + ++++ L
Sbjct: 243 TGN-PHPEDIEAVLKSMMQDEFTTAFNTI--VALKTAKGIALADMISGVYDLLASIKLPP 299
Query: 314 KQKALILEKLAECNARLQDGASEYIQILD-LGSIVI 348
K + +L+ LA+ RL G SE +Q+ LG++ I
Sbjct: 300 KSRIYLLDHLADTEHRLSTGGSEKLQLTALLGAVKI 335
>gi|70606693|ref|YP_255563.1| replication factor C small subunit [Sulfolobus acidocaldarius DSM
639]
gi|449066916|ref|YP_007433998.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449069188|ref|YP_007436269.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
gi|73914011|sp|Q4JAB0.1|RFCS_SULAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|68567341|gb|AAY80270.1| replication factor C [Sulfolobus acidocaldarius DSM 639]
gi|449035424|gb|AGE70850.1| replication factor C small subunit [Sulfolobus acidocaldarius N8]
gi|449037696|gb|AGE73121.1| replication factor C small subunit [Sulfolobus acidocaldarius
Ron12/I]
Length = 325
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 189/313 (60%), Gaps = 15/313 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRPK++D+++ Q+E+V LKK + ++PH LF GPPGTGKT+ +A L+G
Sbjct: 5 ILWAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYG 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ YR+ LELNASD+RGI VIR+KVK FA+ AS PFK+++LDEAD+MT
Sbjct: 65 NNYRQYFLELNASDERGIDVIRNKVKEFARTVASN-------NVPFKVILLDEADNMTAD 117
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL I + E
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNE 177
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
V D K +ET+ + + GDMR+AI +Q+ + I E V +V G+ I ++L
Sbjct: 178 KVEFDPKGIETIFDITQGDMRKAINVIQAASAYG---KITVETVYKVLGLAQPKEIREML 234
Query: 273 KV----DSFQVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECN 327
+ Q +K E LI S + Q H ++ + S+ D K ++++ E
Sbjct: 235 HLALSGKFLQARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVE 294
Query: 328 ARLQDGASEYIQI 340
R+ +GA + IQ+
Sbjct: 295 FRIMEGADDEIQL 307
>gi|146304798|ref|YP_001192114.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
gi|145703048|gb|ABP96190.1| replication factor C small subunit [Metallosphaera sedula DSM 5348]
Length = 326
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/313 (39%), Positives = 189/313 (60%), Gaps = 15/313 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+++DD++ Q+++V LK + ++PH LF GPPGTGKT++ +A H L+G
Sbjct: 5 ILWAEKYRPRSLDDIVNQRDIVERLKHFVKEKNMPHLLFAGPPGTGKTTSALALVHDLYG 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ Y + +LELNASD+RGI VIR+KVK FA+ G PFK V+LDEAD+MT
Sbjct: 65 ENYEQYLLELNASDERGIDVIRNKVKEFARTVTPG-------SVPFKTVLLDEADNMTAD 117
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II P+ SR + FRF PL + +++RL++I +QE
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIMKQE 177
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
V D KAL+ + + + GDMR+AI LQ+ + + E V +V G+ + ++
Sbjct: 178 GVQYDPKALDVIYDVTNGDMRKAINVLQAAS---AYGKVTQEAVFKVLGLAQPKEVRDMV 234
Query: 273 KV----DSFQVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECN 327
K+ K + +I S + Q H DI + + ++ + L+ + + E
Sbjct: 235 KLALQGRFMDARSKLLSLIINYGLSGEDIVKQVHRDIFSNEYQIPEELRVLLTDYIGEVE 294
Query: 328 ARLQDGASEYIQI 340
R+ +GA + IQ+
Sbjct: 295 FRIIEGADDEIQL 307
>gi|63102390|gb|AAH95222.1| Rfc5 protein [Danio rerio]
gi|182889646|gb|AAI65456.1| Replication factor C (activator 1) 5 [Danio rerio]
Length = 334
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 199/331 (60%), Gaps = 35/331 (10%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T ++RN +PWVEKYRP+T+DD+I Q+++S ++K +S LPH LFYGPPGTGKTST+
Sbjct: 7 TQPQSRN--LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTI 64
Query: 84 IAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A QL+ D + +LELNASDDRGI V+R + +FA T + F + FK+VI
Sbjct: 65 LACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------FKLVI 117
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL++N M+
Sbjct: 118 LDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMI 177
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL+++ +QES+ ++ +V S GDMRR++ LQS G + E V TG
Sbjct: 178 PRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYG--KVTEETVYTCTG- 234
Query: 263 IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFD-------QFHDIVMSASSLSDKQ 315
+P L+ D +L+ + AY+ Q+ + HDI+ L +
Sbjct: 235 --HP-----LRSDIANILDWALNKDFTTAYN--QILELKTLKGLALHDILTEVHLLIRRV 285
Query: 316 ------KALILEKLAECNARLQDGASEYIQI 340
+ +L KLA+ RL G SE IQ+
Sbjct: 286 DFPPSIRMGLLIKLADIEYRLASGTSEKIQL 316
>gi|300122519|emb|CBK23089.2| unnamed protein product [Blastocystis hominis]
Length = 341
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/340 (40%), Positives = 198/340 (58%), Gaps = 24/340 (7%)
Query: 19 KTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTG 78
T+++ +N +PWVEKYRP ++D+++ Q ++V+ +K+ + G LPH LFYGPPGTG
Sbjct: 7 NTTITRGDFEQNDALPWVEKYRPTSLDNIVSQDDIVATIKRFIEGNRLPHLLFYGPPGTG 66
Query: 79 KTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPF 138
KT+T++A L+G + +LELNASDDRGI V+R+++K FA T F+
Sbjct: 67 KTTTIMAVAKMLYGSSHSSMVLELNASDDRGINVVREQIKVFA-GTKKLFHTG------V 119
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
K+VILDEAD+MT+AAQ ALRR +EK +++TRFCLICNYVS II + SRC++FRF+PL
Sbjct: 120 KLVILDEADNMTNAAQFALRRIIEKYSQNTRFCLICNYVSEIIPAVQSRCTRFRFQPLNP 179
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258
+ +RL YI QE+V D + L+ S GDMRR I LQ+ A G + E V
Sbjct: 180 QLIRSRLLYILRQENVEFDDDGVAALLALSRGDMRRVINVLQATAMAFG--KVTAEHVYR 237
Query: 259 VTGVIPNPWIEKL----LKVDSFQVLEKYIEDLILEAYSA-----TQLFDQFHDIVMSAS 309
G +P+P +L L S+ K +E+L + A T+L + ++
Sbjct: 238 CAG-MPSPADMELVLSSLMAKSYGDALKTLEELQRKKMFAMSDILTELVGKLQEV----- 291
Query: 310 SLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
S A + +LA+ RL G E IQ+ L I K
Sbjct: 292 SFPPAVDAFLYRELADLEVRLNAGTQEEIQLRSLVGIFTK 331
>gi|449548327|gb|EMD39294.1| hypothetical protein CERSUDRAFT_152406 [Ceriporiopsis subvermispora
B]
Length = 357
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/338 (40%), Positives = 202/338 (59%), Gaps = 29/338 (8%)
Query: 23 STSGKTRNKPV-----------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
+T GK ++K V PWVEKYRP T+DDV+ +++ S ++K + LPH LF
Sbjct: 18 TTKGKGKSKAVDANEHYDDDNLPWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLF 77
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
YGPPGTGKTST++A +++G YR++ILELNASDDRGI V+R+++K FA +T + F++
Sbjct: 78 YGPPGTGKTSTILAVARRIYGSEYRKQILELNASDDRGIDVVREQIKNFA-ETRTLFSKG 136
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
FK++ILDEAD MT AAQAALRR +E+ TK+ RFC+ICNYV+ I+ + SRC++F
Sbjct: 137 ------FKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCTRF 190
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
RF PL + + RLQ + E E V + L++ S GDMRRA+ LQ+C +
Sbjct: 191 RFSPLPISEVEKRLQKVIESEGVKLTDDGKKALLKLSKGDMRRALNVLQAC---HAAYDL 247
Query: 252 VNE-DVLEVTGVIPNPW-IEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIV 305
+ E ++ TG P+P IE ++ D F K I L +E + L + ++ +
Sbjct: 248 IGEAEIYNCTGN-PHPSDIETVVNSMLSDDFTTSHKMISALKVERGLALPDLINGVYEYI 306
Query: 306 MSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ + +L+ LA RL GA+E IQ+ L
Sbjct: 307 ETV-DFKPNARIYLLDILATIEHRLSTGANEKIQLTAL 343
>gi|51467970|ref|NP_001003862.1| replication factor C subunit 5 [Danio rerio]
gi|49618977|gb|AAT68073.1| replication factor C subunit RFC5 [Danio rerio]
Length = 334
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 141/331 (42%), Positives = 198/331 (59%), Gaps = 35/331 (10%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T + RN +PWVEKYRP+T+DD+I Q+++S ++K +S LPH LFYGPPGTGKTST+
Sbjct: 7 TQPQARN--LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLFYGPPGTGKTSTI 64
Query: 84 IAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A QL+ D + +LELNASDDRGI V+R + +FA T + F + FK+VI
Sbjct: 65 LACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------FKLVI 117
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL++N M+
Sbjct: 118 LDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMI 177
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL+++ +QES+ ++ +V S GDMRR++ LQS G + E V TG
Sbjct: 178 PRLEHVIQQESIDITPDGMKAIVTLSTGDMRRSLNILQSTHMAYG--KVTEETVYTCTG- 234
Query: 263 IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFD-------QFHDIVMSASSLSDKQ 315
+P L+ D +L+ + AY+ Q+ + HDI+ L +
Sbjct: 235 --HP-----LRSDIANILDWALNKDFTTAYN--QILELKTLKGLALHDILTEVHLLIHRV 285
Query: 316 ------KALILEKLAECNARLQDGASEYIQI 340
+ +L KLA+ RL G SE IQ+
Sbjct: 286 DFPPSIRMGLLIKLADIEYRLASGTSEKIQL 316
>gi|353238813|emb|CCA70747.1| probable RFC3-DNA replication factor C, 40 kDa subunit
[Piriformospora indica DSM 11827]
Length = 346
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 188/323 (58%), Gaps = 24/323 (7%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP T+DDV+ +++ + +++ + LPH LFYGPPGTGKTST+IA +
Sbjct: 25 NNDLPWVEKYRPITLDDVVSHKDITTTIEQFIQKNRLPHLLFYGPPGTGKTSTIIAVARR 84
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
L+G Y+++ILELNASDDRGI V+RD++K FA+ G FK++ILDEAD M
Sbjct: 85 LYGANYKKQILELNASDDRGIDVVRDQIKGFAETR-------GVFAKGFKLIILDEADMM 137
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQAALRR +E+ T++ RFC+ICNYV+ I + SRC++FRF PL + + RLQ +
Sbjct: 138 TQAAQAALRRVIEQYTRNVRFCIICNYVNKITPAIQSRCTRFRFSPLPVSEVEKRLQTVI 197
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-I 268
E E V + E L++ S GDMRRA+ LQ+C I +E+ + P+P I
Sbjct: 198 ENEGVKVSPEGKEALLKLSRGDMRRALNVLQAC---HAAYDITDEEAIYTCTGNPHPKDI 254
Query: 269 EKLLK---VDSFQVLEKYIEDLILEAYSATQ-----LFDQFHDIVMSASSLSDKQKALIL 320
E ++ F I L E A Q FD ++ + S + +L
Sbjct: 255 ENVVNSMMSQEFGTCYHMINSLKTERGLALQDLISGAFDYVQELELPPHS-----RVYLL 309
Query: 321 EKLAECNARLQDGASEYIQILDL 343
++LA RL G SE +Q+ L
Sbjct: 310 DQLATIEHRLSTGGSEKLQLTAL 332
>gi|327401750|ref|YP_004342589.1| replication factor C small subunit [Archaeoglobus veneficus SNP6]
gi|327317258|gb|AEA47874.1| Replication factor C small subunit [Archaeoglobus veneficus SNP6]
Length = 322
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/310 (41%), Positives = 184/310 (59%), Gaps = 14/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+T+ +V+ Q+EV+ L + ++PH LF GPPGTGKT++ IA LFG+
Sbjct: 8 WVEKYRPRTLKEVVGQEEVIQRLMGYVERKNIPHLLFAGPPGTGKTASAIALARDLFGEN 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ +E+NASD+RGI V+R K+K FA+ G PFKI+ LDEAD++T AQ
Sbjct: 68 WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG-------DAPFKIIFLDEADALTPDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +K RF L CNYVS II+P+ SRC+ F+F+P+ M RL ICE E V
Sbjct: 121 AALRRTMEMYSKICRFILSCNYVSRIIEPIQSRCAVFKFRPVPPEAMRKRLLEICENEGV 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
LE L+ S GD R+AI LQ A L G+ + E + ++T + LL+
Sbjct: 181 KITEDGLEALIYVSNGDFRKAINALQGAAAL--GKVVDAEAIYQITATARPEELANLLET 238
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
F ++ L++E S + Q ++S S + +K K L+++KL E + RL
Sbjct: 239 ALEGKFMEARSILDKLMIEYGMSGEDVVSQLFREILS-SGMDEKMKVLLIDKLGEIDFRL 297
Query: 331 QDGASEYIQI 340
+GA E IQ+
Sbjct: 298 TEGAHERIQL 307
>gi|393222049|gb|EJD07533.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 348
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/322 (42%), Positives = 197/322 (61%), Gaps = 18/322 (5%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T++ +PWVEKYRP T+DDV+ +++ S ++K + LPH LFYGPPGTGKTST++A
Sbjct: 24 TQDDNLPWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVA 83
Query: 88 HQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
+++G YR++ILELNASDDRGI V+R++VK FA +T + F++ FK++ILDEAD
Sbjct: 84 RRIYGPDYRKQILELNASDDRGIDVVREQVKQFA-ETRTLFSKG------FKLIILDEAD 136
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
MT AAQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF PL + RL+
Sbjct: 137 MMTQAAQAALRRVIEQYTKNVRFCIICNYVNKITPAVQSRCTRFRFSPLPIKEVERRLEG 196
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPNP 266
+ E ESV + L++ S GDMRRA+ LQ+C ++ E ++ TG P P
Sbjct: 197 VIEAESVKLTPDGKDALLKLSKGDMRRALNVLQAC---HAAYDVIGETEIYNCTGS-PQP 252
Query: 267 W-IEKLLKV---DSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQKALILE 321
IE ++ D F + I L +E A Q L +D + + + + +L+
Sbjct: 253 KDIETVVTSMLGDEFTTSYEMISALKIERGLALQDLITGAYDYIETI-EFGSQARVYLLD 311
Query: 322 KLAECNARLQDGASEYIQILDL 343
+LA RL G SE IQ+ L
Sbjct: 312 QLASTEYRLSTGGSEKIQLTAL 333
>gi|119872170|ref|YP_930177.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415670|sp|A1RSA2.1|RFCS1_PYRIL RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|119673578|gb|ABL87834.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 329
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 134/321 (41%), Positives = 187/321 (58%), Gaps = 20/321 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV S L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL+YI + E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL--EVTGVIPNPWIEKL- 271
A++ + E S GDMR+AI LQ A IV+ +V+ + P +E
Sbjct: 179 EVKEDAIDLIYELSEGDMRKAINILQVAA---ATNKIVDRNVVAAAAAAIRPTDIVELFN 235
Query: 272 --LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
L D + EK E + ++ + F ++ SL D+ KA + E LA+ + R
Sbjct: 236 LALSGDYLKAREKMRELMYVKGVAGVDFIRAFQRELIRM-SLDDETKAEVAELLADVDYR 294
Query: 330 LQDGASEYIQ----ILDLGSI 346
L GA E IQ + LGSI
Sbjct: 295 LTQGADEEIQLSYFLAKLGSI 315
>gi|406607522|emb|CCH40993.1| Replication factor C subunit 2 [Wickerhamomyces ciferrii]
Length = 316
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 128/295 (43%), Positives = 184/295 (62%), Gaps = 27/295 (9%)
Query: 76 GTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG-- 132
TGKTST++A +L+G ++ + R+LELNASD+RGI ++R+KVK FA+ T S + +
Sbjct: 14 STGKTSTILALTKELYGPELSKTRVLELNASDERGISIVREKVKNFARLTVSNPSSEDLE 73
Query: 133 -KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PCPP+KI+ILDEADSMT AQ+ALRRTME + TRFCLICNY++ II PL SRCSKF
Sbjct: 74 KYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYITRIIDPLASRCSKF 133
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK----- 246
RFKPL N L RLQ+I +QE++ + LE +++ + GD+R+AIT LQS ARL
Sbjct: 134 RFKPLDNNDALLRLQHIQQQENIRLEDGVLEEVLKIASGDLRKAITFLQSAARLHSRLKI 193
Query: 247 ---------------GGEGIVNEDVLEVTGVIPNPWIEKLLKVD---SFQVLEKYIEDLI 288
E I + + E+ G +P ++ +LK+ +FQ + K ++D I
Sbjct: 194 GLEDEDGDLELDDQDSQEQITIKSIREIAGSVPKDVLDGILKISEEKNFQKIFKIVDDTI 253
Query: 289 LEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
E +S + +Q HD ++ S +QK + L E + RL +G E++QIL+L
Sbjct: 254 SEGWSGVDIVNQLHDELILNDLYSSEQKNQFSQILFETDQRLSNGTDEHLQILNL 308
>gi|384248832|gb|EIE22315.1| DNA replication factor C complex subunit 5 [Coccomyxa
subellipsoidea C-169]
Length = 334
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 187/321 (58%), Gaps = 23/321 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+DDV +E++ +K+ + PH LFYGPPGTGKTST++A Q++G
Sbjct: 15 PWVEKYRPKTLDDVAAHKEIIDTIKRLVKEDRFPHVLFYGPPGTGKTSTILAVARQMYGA 74
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
R +LELNASDDRGI ++R+++ FA N+ FK+VILDE D+MT A
Sbjct: 75 SLRSMVLELNASDDRGIGIVREQIVDFASTKTMFSNK-------FKLVILDECDAMTKDA 127
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
QAALRR +EK T++TRFCLICNYV+ II L SRC++FRF PLA++ + +RLQ++ + E
Sbjct: 128 QAALRRVIEKYTRNTRFCLICNYVNKIIPALQSRCTRFRFPPLADSYVRSRLQFVIDSER 187
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW------ 267
V L+ +V GDMRR + LQ A + + E V + TG NP
Sbjct: 188 VNMGDGGLDAVVTLGAGDMRRTLNILQ--ATHMSADVVSEEAVYQCTG---NPLPKDIEA 242
Query: 268 -IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
++ L D V K + I + + T + Q H V + + + L+ + LA+
Sbjct: 243 IVQALFNEDFVDVFAKVQDMQINKGLALTDIVQQLHPWVFRVNMPASVRIKLV-DALADT 301
Query: 327 NARLQDGASEYIQILDLGSIV 347
RL G SE +Q LG++V
Sbjct: 302 EHRLAFGTSERLQ---LGALV 319
>gi|320581211|gb|EFW95432.1| DNA replication factor C [Ogataea parapolymorpha DL-1]
Length = 325
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 130/321 (40%), Positives = 186/321 (57%), Gaps = 31/321 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DDV Q++VV ++K +PH LFYGPPGTGKTST+IA +L+G
Sbjct: 6 LPWVEKYRPAKLDDVYGQKDVVQTVRKFAKEGRIPHLLFYGPPGTGKTSTIIALARELYG 65
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +LELNASDDRGI V+RD++K FA T FN FK++ILDEAD+M++A
Sbjct: 66 KNYRNMVLELNASDDRGIDVVRDQIKNFA-STRQIFNSG------FKLIILDEADAMSNA 118
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++ NY + L SRC++FRF PLA++ + R+ Y+ + E
Sbjct: 119 AQNALRRVIEKYTKNTRFCILANYSHKLNPALLSRCTRFRFSPLADSALQDRVDYVIKAE 178
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCAR-LKGGEGIVNEDVLEVTG---------- 261
+ A ++L+E S GDMRRA+ LQ+CA ++ GE I + V E G
Sbjct: 179 GLKIASDARQSLLELSEGDMRRALNVLQACATAVESGEEITQDMVYECVGAPRPQSVMTV 238
Query: 262 ---VIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
++ N W D++ + K + E + L F V+ L + +
Sbjct: 239 LDAIMSNDW------TDAYATMTKIRK---TEGLALVDLMSGFVS-VLDKYELKPRTRMA 288
Query: 319 ILEKLAECNARLQDGASEYIQ 339
+L+ L + + G S+ IQ
Sbjct: 289 VLQGLGDIEYSISKGGSDKIQ 309
>gi|164656737|ref|XP_001729496.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
gi|159103387|gb|EDP42282.1| hypothetical protein MGL_3531 [Malassezia globosa CBS 7966]
Length = 349
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 131/338 (38%), Positives = 196/338 (57%), Gaps = 17/338 (5%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
++ + + +PWVEKYRP ++D ++ Q + + L+K ++ LPH LFYGPPGTGKTST
Sbjct: 13 ASDASSSHDLLPWVEKYRPSSLDQIMSHQHITATLEKFITANQLPHLLFYGPPGTGKTST 72
Query: 83 MIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
++A +L+G +R +LELNASDDRGI V+R ++K F AS N FK+VI
Sbjct: 73 IMALAARLYGASFRNNVLELNASDDRGIDVVRGQIKAF----ASTRNVFSTQKDTFKLVI 128
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AAQAALRR ME+ T++ RFC+ICNYV+ II + SRC++FRF PL +
Sbjct: 129 LDEADAMTQAAQAALRRVMEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLDRVQVE 188
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
++ + E D KA +++ GDMRRA+ LQ+C +++ED + +
Sbjct: 189 RQIDSVIAAEHCQIDAKAKHAILQLCQGDMRRALNILQAC---HAANDMIDEDSVYLCTG 245
Query: 263 IPNPW-IEKLLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKA 317
P+P IE + F + I+ L +E + T L H +V+S L +
Sbjct: 246 HPHPQDIETAFQAMLEQEFTTAFQTIQTLRVEKGLALTDLLTGMHALVLSL-ELPPHARV 304
Query: 318 LILEKLAECNARLQDGASEYIQILDLGSIVIKANKTAV 355
+L+ +A+ RL ASE +Q+ S ++ + K AV
Sbjct: 305 FLLDHMAQIEYRLSTNASERVQL----SALLASVKAAV 338
>gi|212224565|ref|YP_002307801.1| DNA replication ATPase [Thermococcus onnurineus NA1]
gi|212009522|gb|ACJ16904.1| ATPase involved in DNA replication [Thermococcus onnurineus NA1]
Length = 326
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 184/311 (59%), Gaps = 14/311 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ ++D++ Q+ +V LK + +PH LF GPPG GKT+ +A +LFG+
Sbjct: 14 PWVEKYRPQRLEDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD+RGI VIR+KVK FA+ G FKI+ LDEAD++T A
Sbjct: 74 HWRHNFLELNASDERGINVIREKVKEFARTKPIG-------GASFKIIFLDEADALTQDA 126
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME + + RF L CNY S II+P+ SRC+ FRF+PL +N + R++YI E E
Sbjct: 127 QQALRRTMEMFSTNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDNDIAKRIKYIAENEG 186
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ L+ L+ + GD+RRAI LQ+ A L I +E+V V + +++
Sbjct: 187 LELTEDGLQALLYVAEGDLRRAINVLQAAAALD--RKITDENVFLVASRARPEDVREMMN 244
Query: 274 V----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ + + EK E L+ + S + Q H V + + D++ AL +K+ E N R
Sbjct: 245 LALEGNFLKAREKLREILLKQGLSGEDVLIQMHKEVFNLTIPEDRKVALA-DKIGEYNFR 303
Query: 330 LQDGASEYIQI 340
L +GA+E IQ+
Sbjct: 304 LVEGANEMIQL 314
>gi|240104119|ref|YP_002960428.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
gi|239911673|gb|ACS34564.1| Replication factor C, small subunit (rfcS) [Thermococcus
gammatolerans EJ3]
Length = 333
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 185/311 (59%), Gaps = 14/311 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q+ +V LK +PH LF GPPGTGKTS +A +LFG+
Sbjct: 17 PWVEKYRPQRLDDIVGQEHIVKRLKHYAKTGSMPHLLFAGPPGTGKTSAALALARELFGE 76
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD+RGI VIR+KVK FA+ G FKI+ LDEAD++T A
Sbjct: 77 NWRHNFLELNASDERGINVIREKVKEFARTKPIG-------GASFKIIFLDEADALTQDA 129
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME + + RF L CNY S II+P+ SRC+ FRF+PL + + R++YI EQE
Sbjct: 130 QQALRRTMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLNDEDIAKRIRYIAEQEG 189
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG-VIPNPWIEKL- 271
+ + L+ ++ + GD+RRAI LQ+ A L + I +E+V V P E +
Sbjct: 190 LELTEEGLQAILYVAEGDLRRAINVLQAAAALD--KKITDENVFLVASRARPEDVREMMT 247
Query: 272 --LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
L+ + + +K + L+ + S + Q H V + DK+ AL +K+ E N R
Sbjct: 248 LALEGNFLKARDKLRDILLKQGLSGEDVLIQMHKEVFNLPIPEDKKVALA-DKIGEYNFR 306
Query: 330 LQDGASEYIQI 340
L +GA+E IQ+
Sbjct: 307 LVEGANEMIQL 317
>gi|452819401|gb|EME26461.1| replication factor C subunit 3/5 [Galdieria sulphuraria]
Length = 330
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 195/323 (60%), Gaps = 22/323 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRPKT +DV+ QQ+++ + + ++ LPH LFYGPPGTGKTST++A ++G
Sbjct: 10 WLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTN 69
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI V+R+++K F A+G K+VILDEAD+MT
Sbjct: 70 FKSMVLELNASDDRGIDVVRNEIKDFCSTQRIFATGV----------KLVILDEADAMTS 119
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AAQ ALRR MEK T STRFCLICNY + II L SRC++FRF PL E + RL I E+
Sbjct: 120 AAQMALRRIMEKYTSSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAER 179
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E V+ + ALET+++ S GDMR I LQS L G+ + V E TG N +E++
Sbjct: 180 EGVVFEKDALETIIQLSQGDMRSCINILQSTF-LSSGK-VTCSTVYENTGNPSNEEMEQI 237
Query: 272 L----KVDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
+ + D F ++ + E ++ + Q H +++ ++S + KA +LEKLA+
Sbjct: 238 MDWLNEEDDFSSCYDKVKKMKAERGFALIDILRQIHKRLLT-RNMSRRAKAYLLEKLADI 296
Query: 327 NARLQDGASEYIQILDL-GSIVI 348
+ G SE + + L GS I
Sbjct: 297 EHQFAFGGSELLNLCSLIGSFQI 319
>gi|374633940|ref|ZP_09706305.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
gi|373523728|gb|EHP68648.1| DNA polymerase III, gamma/tau subunit [Metallosphaera
yellowstonensis MK1]
Length = 326
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/313 (41%), Positives = 193/313 (61%), Gaps = 15/313 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
V W EKYRPK++DD++ Q+++V LKK + ++PH LF GPPGTGKT++ +A + L+G
Sbjct: 5 VLWAEKYRPKSLDDIVNQKDIVERLKKFVKEKNMPHLLFAGPPGTGKTTSALALVYDLYG 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ YR+ LELNASD+RGI VIR+KVK FA+ QD PFK V+LDEAD+MT
Sbjct: 65 ENYRQYFLELNASDERGIDVIRNKVKDFARTVTP---QD----VPFKTVLLDEADNMTAD 117
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II P+ SR + FRF PL + +++RL++I + E
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIDPIQSRTALFRFYPLKKEDVISRLEFIAKNE 177
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
V D KAL+T+ E + GDMR+AI LQ+ + + E V +V G+ I +++
Sbjct: 178 KVEYDPKALDTIYEITSGDMRKAINILQASS---AYGKVTTEAVYKVLGMAQPKEIREMV 234
Query: 273 KV---DSF-QVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECN 327
K F + K + +I S + Q H DI + + ++ + ++ + + E
Sbjct: 235 KSALQGRFTEARSKLLSLMINYGLSGEDIVKQVHRDIFSNEFQIPEELRVIMADYVGEVE 294
Query: 328 ARLQDGASEYIQI 340
R+ +GA + IQ+
Sbjct: 295 YRIIEGADDEIQL 307
>gi|281209635|gb|EFA83803.1| replication factor C subunit [Polysphondylium pallidum PN500]
Length = 347
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 194/323 (60%), Gaps = 20/323 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK + +I +++ + K ++ LPH LFYGPPGTGKTST+ A +L+G
Sbjct: 20 LPWVEKYRPKDLSGLIAHEDITDTVSKLIAKNSLPHLLFYGPPGTGKTSTIQAIARKLYG 79
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ Y +LELNASDDRGI V+R+++KTFA N P+K++ILDEADSMT+
Sbjct: 80 ESYSRMVLELNASDDRGIDVVREQIKTFASSMFMFSNY------PYKLIILDEADSMTNP 133
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK T++TRFC+ICNYVS I+ L SRC++FRF PL + + R++ I E E
Sbjct: 134 AQTALRRVIEKYTRTTRFCMICNYVSKILPALQSRCTRFRFSPLPRSAITKRMKEIIECE 193
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCA-RLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
S+ + AL +++ S GDMR+ + LQS + + G I + + TG P +
Sbjct: 194 SLKVNDDALNSIITLSEGDMRKCLNILQSASMSIDVGTTIDKDTIYRCTG---QPLPTDI 250
Query: 272 LKVDSFQVLEKYIEDL--ILE-----AYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
K+ + + + YIE L ILE S T + + H + + ++ ++++L+
Sbjct: 251 KKILMWSLNQSYIEALNNILELKKEKGLSLTDIIKEIHFMTLKVPNIGGPALWNLVKELS 310
Query: 325 ECNARLQDGASEYIQILDLGSIV 347
+ L GASE +Q LGS++
Sbjct: 311 DIEYNLSFGASEKLQ---LGSML 330
>gi|409081372|gb|EKM81731.1| hypothetical protein AGABI1DRAFT_35783 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 344
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 140/356 (39%), Positives = 204/356 (57%), Gaps = 40/356 (11%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
PS+ K +G + +PWVEKYRP T+DDV+ +++ S +++ + LPH LFYGP
Sbjct: 8 PSNGKGKEVDTGTADAESLPWVEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLLFYGP 67
Query: 75 PGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
PGTGKTST++A +++G Y+++ILELNASDDRGI V+R+++K FA +T + F++
Sbjct: 68 PGTGKTSTILAVARRIYGTSYKKQILELNASDDRGIDVVREQIKQFA-ETRTLFSKG--- 123
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK++ILDEAD MT AAQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF
Sbjct: 124 ---FKLIILDEADMMTQAAQAALRRVIEQFTKNVRFCIICNYVNKITPAIQSRCTRFRFS 180
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL + R+ + E E+V + L++ S GDMRRA+ LQ+C I+ E
Sbjct: 181 PLPMTEVEKRVDMVVEAENVPLTTEGKNALLKLSKGDMRRALNVLQAC---HAAYDIIGE 237
Query: 255 DVLEVTGVIPNPW-IEKLLK-------VDSFQVLEKY-------IEDLILEAYSATQLFD 299
+ P+P IE ++ S+Q++ K ++DL+ T FD
Sbjct: 238 SEIYTCTGNPHPSDIEIIVNSMLSDEFTASYQMISKMKTERGLALQDLL------TGAFD 291
Query: 300 QFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTAV 355
I L + +L+ LA RL G SE IQ+ L + A KTAV
Sbjct: 292 YIDTI-----ELKPHARIYLLDHLASTEHRLSTGGSEKIQLTAL----LGAFKTAV 338
>gi|291002133|ref|XP_002683633.1| predicted protein [Naegleria gruberi]
gi|284097262|gb|EFC50889.1| predicted protein [Naegleria gruberi]
Length = 351
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 131/324 (40%), Positives = 190/324 (58%), Gaps = 24/324 (7%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP + D++ E++S +++ + G LPH L YGPPGTGKTST++A +LFG+
Sbjct: 14 WIEKYRPHELTDLLSHTEIISTIQRLIDGGKLPHLLLYGPPGTGKTSTVLAIAKKLFGNR 73
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP-FKIVILDEADSMTHAA 153
+ +LELNASDDRGI VIR+++K FA F K P K++ILDEAD MT A
Sbjct: 74 LTQNVLELNASDDRGIDVIRNEIKDFASTKGLKFFTAQKDTTPDIKLIILDEADQMTKDA 133
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
QAALRRT+EK +K+ RFCLICNYV+ II L SRC++FRF PL ++ +++RL+ IC++E+
Sbjct: 134 QAALRRTIEKYSKNVRFCLICNYVNKIIPALQSRCTRFRFSPLKKHEVVSRLEEICKEEN 193
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
V+ + L+ + S GDMR+ + LQS G I ++V TG NP LK
Sbjct: 194 VIYNQVGLDAIYRLSNGDMRKCVNILQSTFMSFG--QITEDNVHMCTG---NP-----LK 243
Query: 274 VDSFQVLEKYIEDLILEAY------------SATQLFDQFHDIVMSASSLSDKQKALILE 321
D ++ D + +AY + + H VM ++ + +LE
Sbjct: 244 EDIRLIINSLFNDSLADAYKKVMNIKTERGLALQDILRDIHPYVMKL-NIPIAVRIYLLE 302
Query: 322 KLAECNARLQDGASEYIQILDLGS 345
K+++ RL G SE +Q + L S
Sbjct: 303 KMSDIEYRLSLGTSESLQTMALIS 326
>gi|118431491|ref|NP_147997.2| replication factor C small subunit [Aeropyrum pernix K1]
gi|150421641|sp|Q9YBS7.3|RFCS_AERPE RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|116062816|dbj|BAA80521.2| replication factor C small subunit [Aeropyrum pernix K1]
Length = 325
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 188/312 (60%), Gaps = 17/312 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+++DD+++Q+ VV LK+ + ++PH LF GPPGTGKT+ A H LFG+
Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGEN 68
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI VIR+KVK FA+ P PFKIV+LDEAD+MT AQ
Sbjct: 69 YRQYMLELNASDERGINVIREKVKEFARSRTP-------PEIPFKIVLLDEADNMTSDAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + TRF LI NY S II P+ SRC+ FRF+PL++ ++ RL+YI E E V
Sbjct: 122 QALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGV 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLK 273
+ +AL+ + E S GDMR+AI LQ+ + L G V D V V G+ + ++L
Sbjct: 182 DYEEEALDAIYEISEGDMRKAINVLQAASYL----GKVTVDAVYRVVGMAKPREVREMLA 237
Query: 274 V---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNA 328
F + +++E S + Q H + S + ++ + L + L E +
Sbjct: 238 TALKGDFTAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHY 297
Query: 329 RLQDGASEYIQI 340
RL +G+ + IQ+
Sbjct: 298 RLVEGSDDDIQL 309
>gi|452824858|gb|EME31858.1| replication factor C subunit [Galdieria sulphuraria]
Length = 330
Score = 238 bits (606), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 137/323 (42%), Positives = 195/323 (60%), Gaps = 22/323 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRPKT +DV+ QQ+++ + + ++ LPH LFYGPPGTGKTST++A ++G
Sbjct: 10 WLEKYRPKTFNDVLSQQDIIVTILRFVNSNSLPHMLFYGPPGTGKTSTILACAEHMYGTN 69
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI V+R+++K F A+G K+VILDEAD+MT
Sbjct: 70 FKSMVLELNASDDRGIDVVRNEIKDFCSTQRIFATGV----------KLVILDEADAMTS 119
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AAQ ALRR MEK T STRFCLICNY + II L SRC++FRF PL E + RL I E+
Sbjct: 120 AAQMALRRIMEKYTTSTRFCLICNYANKIIPALQSRCTRFRFGPLKEEDIRLRLGQIAER 179
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E V+ + ALET+++ S GDMR I LQS L G+ + V E TG N +E++
Sbjct: 180 EGVVFEKDALETIIQLSQGDMRSCINILQSTF-LSSGK-VTCSTVYENTGNPSNEEMEQI 237
Query: 272 L----KVDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
+ + D F ++ + E ++ + Q H +++ ++S + KA +LEKLA+
Sbjct: 238 MDWLNEEDDFSSCYDKVKKMKAERGFALIDILRQIHKRLLT-RNMSRRAKAYLLEKLADI 296
Query: 327 NARLQDGASEYIQILDL-GSIVI 348
+ G SE + + L GS I
Sbjct: 297 EHQFAFGGSELLNLCSLIGSFQI 319
>gi|71745690|ref|XP_827475.1| replication factor C subunit 3 [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831640|gb|EAN77145.1| replication factor C, subunit 3, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331678|emb|CBH14672.1| replication factor C, subunit 3, putative [Trypanosoma brucei
gambiense DAL972]
Length = 357
Score = 238 bits (606), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 132/332 (39%), Positives = 192/332 (57%), Gaps = 12/332 (3%)
Query: 17 SSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
+ + ++S +N +PWVEKYRP T+DDV+ +E++ ++ ++ +PH LFYGPPG
Sbjct: 2 TGEGTLSNGQPAKNSTLPWVEKYRPTTLDDVVAHEEILDTTRRLMNSGSMPHLLFYGPPG 61
Query: 77 TGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF--NQDGK 133
TGKT+T+ A H LFG + R +LE+NASDDRGI V+R +V+ FA ++ F N +
Sbjct: 62 TGKTTTIKACAHHLFGKERLRANVLEMNASDDRGIDVVRQQVREFASTSSIFFQNNPGNQ 121
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
FK+VILDEAD M+ AQAALRR +EK TK+ RFC++CN+++ II L SRC++FRF
Sbjct: 122 TVTNFKLVILDEADQMSSDAQAALRRIIEKFTKNVRFCILCNHINKIIPALQSRCTRFRF 181
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
P+ ++ ML RL+ I +E V + L + S GDMRR + +Q+ + + GE I
Sbjct: 182 SPVKKSAMLPRLKLIAREEGVPFTDEGLISAFRLSDGDMRRCLNTMQASS-MSAGE-ITE 239
Query: 254 EDVLEVTGVIPNP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA 308
E V TG P P + +L + EK + ++ + S L + H IVM A
Sbjct: 240 ESVYRTTGN-PTPTDVRVMVGDMLSHNYATSWEKVQQLVVDKGVSTADLVREVHLIVM-A 297
Query: 309 SSLSDKQKALILEKLAECNARLQDGASEYIQI 340
L K +L KLA+ G E I I
Sbjct: 298 MDLPQDCKCFLLIKLADVEYYAAGGTREMINI 329
>gi|388583685|gb|EIM23986.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 335
Score = 237 bits (605), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 135/317 (42%), Positives = 184/317 (58%), Gaps = 22/317 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DDV+ E++ + + + LPH LFYGPPGTGKTST++A +++G
Sbjct: 14 LPWVEKYRPNELDDVVSHTEIIQTINQFIQKQRLPHLLFYGPPGTGKTSTILAIAKKIYG 73
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ +LELNASDDRGI V+RD++K+FA QT + F+ DG FK++ILDEAD MT
Sbjct: 74 GNWKRNVLELNASDDRGIDVVRDQIKSFA-QTRTLFS-DG-----FKLIILDEADLMTQQ 126
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E T +TRFC+ICNYV+ I + SRC++FRF PL + RL + E E
Sbjct: 127 AQGALRRIIEHYTPTTRFCIICNYVNKITPAIMSRCTRFRFSPLPYAHLDKRLVEVIENE 186
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP----WI 268
+V D A + L+ + GDMRRA+ LQ+C E I +DV VT P P +I
Sbjct: 187 AVQIDDDAKKALLNLTKGDMRRALNILQACHTACMPERISIKDVYNVTAA-PQPEAIEYI 245
Query: 269 EKLLKVDSFQVLEKYIEDLILEAYSATQ-----LFDQFHDIVMSASSLSDKQKALILEKL 323
L D I + + A Q ++D I ++ K ILE L
Sbjct: 246 VNTLLKDEISTCYSKIHQVKRQNGLALQDILTGVYDYIQTIEFPTAT-----KVAILELL 300
Query: 324 AECNARLQDGASEYIQI 340
AE RL G+SE IQ+
Sbjct: 301 AEVEHRLSKGSSETIQL 317
>gi|440301872|gb|ELP94258.1| replication factor C subunit, putative [Entamoeba invadens IP1]
Length = 337
Score = 237 bits (604), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 130/322 (40%), Positives = 199/322 (61%), Gaps = 15/322 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK +D+V Q+EV+ +LK L+ LP+ LF+GPPG+GKT++++A +LFG+
Sbjct: 18 WSEKYRPKKLDEVKGQEEVIKLLKSSLTSG-LPNLLFFGPPGSGKTTSILALSRELFGNC 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+++R+LELNAS++RGI +IR +K +A Q S +QDG P +K++ILDE+D++T AQ
Sbjct: 77 FKDRVLELNASNERGIDMIRTTLKNYAMQDVS--HQDG--IPDYKLIILDESDALTPDAQ 132
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T++TRFCLICNY+S I+ P++SRC KFRF L + T+ L ICE+E
Sbjct: 133 TALRRMMEDFTRNTRFCLICNYISRILPPISSRCIKFRFNALPQETVFEHLTSICEKEKF 192
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGG--EGIVNEDVLEVTGVIPNPWIEKLL 272
+A++ + + S GDMR AI LQ +L G + +D+ V GV+PN I +++
Sbjct: 193 DVTPEAIKAVGKLSEGDMRYAIGLLQ---KLSQGVRHSVTPQDISNVAGVVPNLEISQII 249
Query: 273 KV----DSFQVLEKYIEDLILEAYSATQLFDQFHDI-VMSASSLSDKQKALILEKLAECN 327
+ F + K + ++ E Y+A + Q DI + L++ Q+ L ++A+ +
Sbjct: 250 LICKEKTVFDIYLKVLHLVVEENYAADSILSQIRDIFTQDTNGLTETQRCNFLLEIADTD 309
Query: 328 ARLQDGASEYIQILDLGSIVIK 349
A L D A I L + K
Sbjct: 310 AALIDRADPLFAISSLLGTLFK 331
>gi|302502708|ref|XP_003013315.1| replication factor C subunit [Arthroderma benhamiae CBS 112371]
gi|291176878|gb|EFE32675.1| replication factor C subunit [Arthroderma benhamiae CBS 112371]
Length = 326
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 133/315 (42%), Positives = 187/315 (59%), Gaps = 40/315 (12%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFA-----Q 122
LFYG PGTGKTST++A LFG + R R+LELNASD+RGI ++R+K+K FA Q
Sbjct: 1 MLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLFQ 60
Query: 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
A + PCPPFKI+ILDEADSMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II
Sbjct: 61 PPADPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIID 120
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
P+ SRCSKFRFK L + +RL I E + + +ETL+ S GD+R+AIT +QS
Sbjct: 121 PVASRCSKFRFKVLDGSAAQSRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSS 180
Query: 243 ARL-KGGEG------------------IVNEDVLEVTGVIPNPWIEKLL-------KVDS 276
ARL + G G I + EV+G++P +++++ +
Sbjct: 181 ARLARYGSGKKKDSSDKDMELDDVKPRITVRSIEEVSGLVPETVMQRVVAALRPSKRASK 240
Query: 277 FQVLEKYIEDLILEAYSATQLFDQ--------FHDIVMSASSLSDKQKALILEKLAECNA 328
++ + + DL+ + +SA+Q+ Q + V+ S+SD QK IL+ +E +
Sbjct: 241 YEEISSLVADLVADGWSASQVLSQNVLLTSFKTYQAVLQDESISDVQKNQILKVCSEFDK 300
Query: 329 RLQDGASEYIQILDL 343
RL DGA E++ LD
Sbjct: 301 RLVDGADEHLSTLDF 315
>gi|448606584|ref|ZP_21659010.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
gi|445738792|gb|ELZ90304.1| replication factor C small subunit [Haloferax sulfurifontis ATCC
BAA-897]
Length = 327
Score = 236 bits (603), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 186/309 (60%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEGI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIERMVRN 246
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F K +E LI++ + + DQ H V L +++ ++E++ E + R+
Sbjct: 247 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDEREAVRLMERIGEADYRI 305
Query: 331 QDGASEYIQ 339
+GA+E +Q
Sbjct: 306 SEGANEQVQ 314
>gi|448579007|ref|ZP_21644323.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
gi|445724360|gb|ELZ75993.1| replication factor C small subunit [Haloferax larsenii JCM 13917]
Length = 329
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 185/309 (59%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV Q+E+V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 19 WIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 78
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD RGI V+RD++K FA+ + G + ++I+ LDEADS+T+ AQ
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKNFARSSFGGHD--------YRIIFLDEADSLTNDAQ 130
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + + + I E +
Sbjct: 131 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAAAEGI 190
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 191 ELTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEQMVRD 248
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F K +E LI++ + + DQ H V L ++ ++E++ E + R+
Sbjct: 249 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWD-FDLDERAAVRLMERIGEADYRI 307
Query: 331 QDGASEYIQ 339
+GA+E +Q
Sbjct: 308 SEGANEQVQ 316
>gi|448589356|ref|ZP_21649515.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
gi|445735784|gb|ELZ87332.1| replication factor C small subunit [Haloferax elongans ATCC
BAA-1513]
Length = 329
Score = 236 bits (603), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 185/309 (59%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV Q+E+V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 19 WIEKYRPQTLDDVYGQEEIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 78
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD RGI V+RD++K FA+ + G + ++I+ LDEADS+T+ AQ
Sbjct: 79 WRGNFLELNASDQRGIDVVRDRIKNFARSSFGGHD--------YRIIFLDEADSLTNDAQ 130
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + + + I + E +
Sbjct: 131 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAKAEGI 190
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE +++
Sbjct: 191 ELTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIETMVRD 248
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F K +E LI++ + + DQ H V L ++ ++E++ E + R+
Sbjct: 249 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWD-FDLDERAAVRLMERIGEADYRI 307
Query: 331 QDGASEYIQ 339
+GA+E +Q
Sbjct: 308 SEGANEQVQ 316
>gi|426196606|gb|EKV46534.1| hypothetical protein AGABI2DRAFT_71819 [Agaricus bisporus var.
bisporus H97]
Length = 344
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/355 (38%), Positives = 205/355 (57%), Gaps = 40/355 (11%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+ K +G + +PWVEKYRP T+DDV+ +++ S +++ + LPH LFYGPP
Sbjct: 9 SNGKGKEVDTGNADAESLPWVEKYRPVTLDDVVSHKDITSTIERFIERNRLPHLLFYGPP 68
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
GTGKTST++A +++G+ Y+++ILELNASDDRGI V+R+++K FA +T + F++
Sbjct: 69 GTGKTSTILAVARRIYGNSYKKQILELNASDDRGIDVVREQIKQFA-ETRTLFSKG---- 123
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
FK++ILDEAD MT AAQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF P
Sbjct: 124 --FKLIILDEADMMTQAAQAALRRVIEQFTKNVRFCIICNYVNKITPAIQSRCTRFRFSP 181
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L + R+ + E E+V + L++ S GDMRRA+ LQ+C I+ E
Sbjct: 182 LPMTEVEKRVDMVVEAENVPLTTEGKNALLKLSKGDMRRALNVLQAC---HAAYDIIGES 238
Query: 256 VLEVTGVIPNPW-IEKLLK-------VDSFQVLEKY-------IEDLILEAYSATQLFDQ 300
+ P+P IE ++ S+Q++ K ++DL+ T FD
Sbjct: 239 EIYTCTGNPHPSDIEIIVNSMLSDEFTASYQMISKMKTERGLALQDLL------TGAFDY 292
Query: 301 FHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTAV 355
I L + +L+ LA RL G SE IQ+ + ++ A KTAV
Sbjct: 293 IDTI-----ELKPHARIYLLDHLASTEHRLSTGGSEKIQL----TALLGAFKTAV 338
>gi|213514520|ref|NP_001135046.1| replication factor C subunit 5 [Salmo salar]
gi|209738250|gb|ACI69994.1| Replication factor C subunit 5 [Salmo salar]
Length = 335
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 135/326 (41%), Positives = 198/326 (60%), Gaps = 31/326 (9%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
++RN +PWVEKYRP+T+DD+I ++++S ++K +S LPH LFYGPPGTGKTST++A+
Sbjct: 10 QSRN--LPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKTSTVLAS 67
Query: 87 CHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
QL+ + + +LELNASDDRGI V+R + +FA T + F + FK+VILDE
Sbjct: 68 AKQLYKEKEFNAMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------FKLVILDE 120
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+++ M+ RL
Sbjct: 121 ADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSQDQMIPRL 180
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPN 265
+++ +QES+ ++ +V S GDMRR++ LQS + G + ++V TG +
Sbjct: 181 EFVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG--KVTEDNVYTCTG---H 235
Query: 266 PWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQ-----FHDIVMSASSLSDKQ----- 315
P L+ D +L+ + AY+ HDI+ L +
Sbjct: 236 P-----LRSDIANILDWSLNKDFTSAYNQILQLKTLKGLALHDILTEVHLLIHRVDFPPA 290
Query: 316 -KALILEKLAECNARLQDGASEYIQI 340
+ +L KLA+ RL G SE IQ+
Sbjct: 291 IRMGLLIKLADIEYRLASGTSEKIQL 316
>gi|66812244|ref|XP_640301.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74855117|sp|Q54ST4.1|RFC5_DICDI RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|60468315|gb|EAL66323.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 347
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 186/320 (58%), Gaps = 15/320 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD+I +++ + K + LPH LFYGPPGTGKTST+ A +L+G
Sbjct: 24 LPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYG 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y +LELNASDDRGI V+R+++KTFA + FN P+K++ILDEADSMT+
Sbjct: 84 DNYSRMVLELNASDDRGIDVVREQIKTFAS-SMFFFNT----TVPYKLIILDEADSMTNI 138
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++CNYV II L SRC++FRF PL RL+ I E+E
Sbjct: 139 AQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKE 198
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----W 267
+V D KA+ ++E GDMR+ + LQS + I E + + TG P P
Sbjct: 199 NVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGY-PMPSDIELM 257
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
++ LL D + + + + S + V+ L + +L L++
Sbjct: 258 VDWLLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQI-DLDNVILCKLLSHLSDIE 316
Query: 328 ARLQDGASEYIQILDLGSIV 347
L G+SE +Q LGS+V
Sbjct: 317 YNLSIGSSEKLQ---LGSLV 333
>gi|330507468|ref|YP_004383896.1| replication factor C small subunit [Methanosaeta concilii GP6]
gi|328928276|gb|AEB68078.1| replication factor C small subunit [Methanosaeta concilii GP6]
Length = 323
Score = 236 bits (602), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 187/310 (60%), Gaps = 13/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+ +DD++ Q E+V LK + +LPH LF GPPG GKT+ I+ ++FG+
Sbjct: 8 WIEKYRPERLDDIVGQDEIVRRLKSYVKTRNLPHLLFSGPPGVGKTAASISIVKEIFGET 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R +ELNASD+RGI +IR KVK FA+ G FK++ LDEAD++T+ AQ
Sbjct: 68 WRNNFIELNASDERGIDIIRHKVKDFARMAPLG-------EADFKVIFLDEADALTNDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II+P+ SRC+ +RFKPL+ + R+++I +E +
Sbjct: 121 SALRRTMERYSATTRFILSCNYSSKIIEPIQSRCAVYRFKPLSPEAVTKRIKFIASEEGL 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
L + +GGDMR+AI LQ+ A L G+ + E + ++T I+ +K
Sbjct: 181 RVSDGGLSAIEYVAGGDMRKAINALQAAALL--GDEVDEETIYQITSTAKPEEIKSFIKT 238
Query: 275 ---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
F ++DL+L + S + Q H ++ ++D+ + +++++ E + R+
Sbjct: 239 AISGDFVGARAILDDLLLSKGLSGQDVVIQIHRAMLDLDDIADRDRVKLIDRIGEIDFRM 298
Query: 331 QDGASEYIQI 340
+GA+E IQ+
Sbjct: 299 TEGANERIQL 308
>gi|237843503|ref|XP_002371049.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|211968713|gb|EEB03909.1| activator 1 36 kDa, putative [Toxoplasma gondii ME49]
gi|221484795|gb|EEE23089.1| activator 1 36 kDa, putative [Toxoplasma gondii GT1]
gi|221504971|gb|EEE30636.1| activator 1 36 kDa, putative [Toxoplasma gondii VEG]
Length = 398
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 129/366 (35%), Positives = 201/366 (54%), Gaps = 42/366 (11%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
LGK AP + + + ++ R +PWVEKYRP+ + DV+ +++ ++ + LPH
Sbjct: 14 NLGK-APEKASSQLPSAHADR--ALPWVEKYRPERLSDVLAHDDIIRTIRNYVHKGQLPH 70
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF 128
LF+GPPGTGKTST++A + +G R +LELNASDDRGI +R+++KTFA+ +++ F
Sbjct: 71 LLFHGPPGTGKTSTILAVAKEFYGSAVRTHVLELNASDDRGINTVREQIKTFAETSSTSF 130
Query: 129 NQD--------------------------GKPCPPFKIVILDEADSMTHAAQAALRRTME 162
Q+ G+ P K++ILDEAD MT+AAQ ALRR ME
Sbjct: 131 QQNRLIFGKSAVPATEAAEATSSHGQEKKGQGGPSLKLIILDEADQMTNAAQNALRRIME 190
Query: 163 KETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALE 222
++ RFCLICN+V+ I + SRC+ FRF P++ ++ T+ I + E + L+
Sbjct: 191 AYARNVRFCLICNFVNKITPAIQSRCTGFRFTPVSSASLKTKAAQIVQDEKMKLSDDGLD 250
Query: 223 TLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEKLLKVDSF 277
LV+ + GDMRR + C+Q+ GE VN D++ T +P P E+LL D F
Sbjct: 251 ALVKIARGDMRRLLNCMQASHLAHPGEE-VNADIVHRTLGLPPPSEVTTMFERLLVADFF 309
Query: 278 QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL---EKLAECNARLQDGA 334
++ E + + Y+ FH+ ++ L D +++ +LA+ RL GA
Sbjct: 310 ACCKELDELVTAKGYAMRDWVIAFHERIL----LVDWPANVLITFVSRLADLEERLATGA 365
Query: 335 SEYIQI 340
SE +Q+
Sbjct: 366 SEAVQM 371
>gi|159477557|ref|XP_001696875.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
gi|158274787|gb|EDP00567.1| DNA replication factor C complex subunit 5 [Chlamydomonas
reinhardtii]
Length = 356
Score = 236 bits (601), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/339 (40%), Positives = 196/339 (57%), Gaps = 20/339 (5%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
+ T G + PWVEKYRPK +DDV +E++ +K+ LPH L YGPPGTGKTS
Sbjct: 25 LKTDGTVDGRDAPWVEKYRPKKLDDVAAHKEIIDTIKRLTVENRLPHLLLYGPPGTGKTS 84
Query: 82 TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141
T++A Q++G+ LELN+SD+RGI V+R +++ FA T S F+ FK++
Sbjct: 85 TILAVARQIYGNSLANMTLELNSSDERGIGVVRQEIQDFAS-TRSVFSNK------FKLI 137
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDE D+MT AQAALRR +EK T++ RFCLICNYVS II L SRC+KFRF PL+ +
Sbjct: 138 ILDECDAMTQDAQAALRRVIEKYTRNARFCLICNYVSKIIPALQSRCTKFRFAPLSPQFV 197
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
RLQY+ + E + L+ +V+ GDMRR++ LQSC + + V TG
Sbjct: 198 RERLQYVADIEKMKLGPGGLDAVVQLGSGDMRRSLNILQSCH--MAFDTVDQSAVYTCTG 255
Query: 262 VIPNPW---IEKLLK-VDSFQVLEKYIEDLILEAYSATQLFD---QFHDIVMSASSLSDK 314
NP IE++L + + +V E + L L+ L D + H VM A S+
Sbjct: 256 ---NPLPADIERVLTWLLNDRVAEVFANILKLQVDKGIALVDIVRELHPFVM-ALSIPVP 311
Query: 315 QKALILEKLAECNARLQDGASEYIQILDLGSIVIKANKT 353
K ++E+LA+ RL SE +Q+ L + ++A +T
Sbjct: 312 AKVALVERLADVEHRLAFSTSEKLQLGALVAAFVRARET 350
>gi|448582711|ref|ZP_21646215.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
gi|445732359|gb|ELZ83942.1| replication factor C small subunit [Haloferax gibbonsii ATCC 33959]
Length = 327
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 184/309 (59%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAA--TTGEVVDEEAVYMITSTARPEDIEEMVRA 246
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
F K +E LI++ + + DQ H V L +++ ++E++ E + R+
Sbjct: 247 AIDGEFTTARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDEREAVRLMERIGEADYRI 305
Query: 331 QDGASEYIQ 339
+GA+E +Q
Sbjct: 306 SEGANEQVQ 314
>gi|448560589|ref|ZP_21634037.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
gi|445722239|gb|ELZ73902.1| replication factor C small subunit [Haloferax prahovense DSM 18310]
Length = 327
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 184/309 (59%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEEMVRA 246
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
F K +E LI++ + + DQ H V L +++ ++E++ E + R+
Sbjct: 247 AIDGEFTTARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLGEREAVRLMERIGEADYRI 305
Query: 331 QDGASEYIQ 339
+GA+E +Q
Sbjct: 306 SEGANEQVQ 314
>gi|401403730|ref|XP_003881552.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
gi|325115965|emb|CBZ51519.1| putative activator 1 36 kDa [Neospora caninum Liverpool]
Length = 403
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 201/373 (53%), Gaps = 42/373 (11%)
Query: 8 GKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS 62
G D+P S++ S + K + +PWVEKYRP+ +DDV+ +++ ++ +
Sbjct: 6 GVTNSDSPRSAEASERPASKLPPHGLSERALPWVEKYRPERLDDVLAHDDIIRTIRHYVE 65
Query: 63 GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ 122
LPH LF+GPPGTGKTST++A + +G R +LELNASDDRGI +R+++KTFA+
Sbjct: 66 KGQLPHLLFHGPPGTGKTSTILAVAKEFYGSAVRTHVLELNASDDRGINTVREQIKTFAE 125
Query: 123 QTASGFNQD-----GKPCPP-------------------------FKIVILDEADSMTHA 152
+++ F+ GKP P K++ILDEAD MT+A
Sbjct: 126 TSSTSFHGQGRLMFGKPAAPTASAEKEEASSLAQSQEKRGGAGPSLKLIILDEADQMTNA 185
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR ME ++ RFCLICN+++ I + SRC+ FRF P++ ++ + I E+E
Sbjct: 186 AQNALRRIMEAYARNVRFCLICNFINKITPAIQSRCTGFRFTPVSSLSLKQKAAQIAEEE 245
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----W 267
++ L+ LV+ + GDMRR + C+Q+ GE +VN D++ T +P P
Sbjct: 246 TMKLSDDGLDALVKIARGDMRRLLNCMQASHLAHPGE-VVNADIVHRTLGLPPPSEVTAM 304
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
E+LL D F ++ E + + Y+ FH+ ++ + + +LA+
Sbjct: 305 FERLLVADFFACCKELDELVNTKGYAMRDWVIAFHERILRVDWPVNVLITFV-SRLADLE 363
Query: 328 ARLQDGASEYIQI 340
RL GASE +Q+
Sbjct: 364 ERLATGASEAVQM 376
>gi|448622422|ref|ZP_21669116.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
gi|445754504|gb|EMA05909.1| replication factor C small subunit [Haloferax denitrificans ATCC
35960]
Length = 327
Score = 236 bits (601), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 186/309 (60%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAA--TTGEVVDEEAVYMITSTARPEDIEEMVRN 246
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F K +E LI++ + + DQ H V L +++ ++E++ E + R+
Sbjct: 247 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDEREAVRLMERIGEADYRI 305
Query: 331 QDGASEYIQ 339
+GA+E +Q
Sbjct: 306 SEGANEQVQ 314
>gi|313212534|emb|CBY36498.1| unnamed protein product [Oikopleura dioica]
gi|313219619|emb|CBY30541.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 235 bits (600), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 133/315 (42%), Positives = 192/315 (60%), Gaps = 19/315 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I E++S +KK + LPH LFYGPPGTGKTST++A +L+G
Sbjct: 8 LPWVEKYRPNKLDDLISHTEIISTIKKFIDNEQLPHLLFYGPPGTGKTSTILAVAKELYG 67
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASD RGI V+R+++ FA + C FK++ILDE D+MT
Sbjct: 68 AKNLKKMVLELNASDARGINVVRNEILNFASSRSLH-------CKGFKVIILDECDAMTR 120
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQAALRR MEK TK+ RFCLICNY+ +I + SRC++FRF PL+ M+ R+ ++ E+
Sbjct: 121 DAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEE 180
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + D ++ L++ + GDMRR++ LQ A + ++ V +VTG I ++
Sbjct: 181 EGIDIDQNGMDLLLKMAEGDMRRSLNILQ--ASHLAFNKVTDDIVYKVTGRPRRNDIRRM 238
Query: 272 LKVDSFQVLEKY----IEDLILEAYSATQ--LFDQFHDIVMSASSLSDKQKALILEKLAE 325
++ Q + KY IE+L+LE A L D + +I + L D KA IL LA+
Sbjct: 239 MEWLLNQDI-KYCMDSIEELMLENGIALNDVLTDLYEEI--CEADLPDIPKAEILSALAD 295
Query: 326 CNARLQDGASEYIQI 340
RL GA+E IQ+
Sbjct: 296 IEYRLNIGATEKIQL 310
>gi|292654383|ref|YP_003534280.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448293928|ref|ZP_21484030.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|448597682|ref|ZP_21654607.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
gi|291370302|gb|ADE02529.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445569321|gb|ELY23895.1| replication factor C small subunit [Haloferax volcanii DS2]
gi|445739143|gb|ELZ90652.1| replication factor C small subunit [Haloferax alexandrinus JCM
10717]
Length = 327
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 185/309 (59%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAA--TTGEVVDEEAVYMITSTARPEDIEEMVRA 246
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F K +E LI++ + + DQ H V L ++ ++E++ E + R+
Sbjct: 247 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDERDAVRLMERIGEADYRI 305
Query: 331 QDGASEYIQ 339
+GA+E +Q
Sbjct: 306 SEGANEQVQ 314
>gi|448543893|ref|ZP_21625354.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|448551053|ref|ZP_21629195.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|448558572|ref|ZP_21633129.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
gi|445706035|gb|ELZ57922.1| replication factor C small subunit [Haloferax sp. ATCC BAA-646]
gi|445710609|gb|ELZ62407.1| replication factor C small subunit [Haloferax sp. ATCC BAA-645]
gi|445712324|gb|ELZ64106.1| replication factor C small subunit [Haloferax sp. ATCC BAA-644]
Length = 327
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 185/309 (59%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVAEQVRDIAAAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEEMVRA 246
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F K +E LI++ + + DQ H V L ++ ++E++ E + R+
Sbjct: 247 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDERDAVRLMERIGEADYRI 305
Query: 331 QDGASEYIQ 339
+GA+E +Q
Sbjct: 306 SEGANEQVQ 314
>gi|448573535|ref|ZP_21641018.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
gi|445718441|gb|ELZ70131.1| replication factor C small subunit [Haloferax lucentense DSM 14919]
Length = 327
Score = 235 bits (599), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 122/309 (39%), Positives = 185/309 (59%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIATAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEEMVRA 246
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F K +E LI++ + + DQ H V L ++ ++E++ E + R+
Sbjct: 247 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDERDAVRLMERIGEADYRI 305
Query: 331 QDGASEYIQ 339
+GA+E +Q
Sbjct: 306 SEGANEQVQ 314
>gi|433431944|ref|ZP_20407710.1| replication factor C small subunit [Haloferax sp. BAB2207]
gi|432193760|gb|ELK50452.1| replication factor C small subunit [Haloferax sp. BAB2207]
Length = 327
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 188/310 (60%), Gaps = 17/310 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T DDV Q ++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTFDDVYGQDDIVERLRSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++++ LDEADS+T+ AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGHD--------YRVIFLDEADSLTNDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIAEQVRDIAAAEDI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKLLK 273
L+ LV +GGDMRRAI LQ+ A GE +V+ED + + P IE++++
Sbjct: 189 EVTEDGLDALVYAAGGDMRRAINSLQAAA--TTGE-VVDEDAVYMITSTARPEDIEEMVR 245
Query: 274 --VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+D F K +E LI++ + + DQ H V L ++ ++E++ E + R
Sbjct: 246 AAIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDERDAVRLMERIGEADYR 304
Query: 330 LQDGASEYIQ 339
+ +GA+E +Q
Sbjct: 305 ISEGANEQVQ 314
>gi|313124845|ref|YP_004035109.1| replication factor c small subunit [Halogeometricum borinquense DSM
11551]
gi|448287254|ref|ZP_21478467.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|312291210|gb|ADQ65670.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
gi|445572462|gb|ELY27000.1| replication factor C small subunit [Halogeometricum borinquense DSM
11551]
Length = 328
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/309 (39%), Positives = 187/309 (60%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV Q+++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 17 WIEKYRPQTLDDVYGQEDIVERLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + GF+ ++I+ LDEADS+T AQ
Sbjct: 77 WRGNFLELNASDERGIDVVRDRIKNFARSSFGGFD--------YRIIFLDEADSLTSDAQ 128
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E E +
Sbjct: 129 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAVREQVKDIAETEEI 188
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 189 ELTEDGLDALVYAAGGDMRRAINSLQAAA--TTGEIVDEEAVYLITSTARPEDIEEMVQS 246
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F +E L+++ + + DQ H V L ++ ++E++ E + R+
Sbjct: 247 AIDGEFLTARSKLETLLVDTGMAGGDIIDQLHRSVWDF-DLDERTTVRLMERIGEADYRI 305
Query: 331 QDGASEYIQ 339
+GA+E +Q
Sbjct: 306 TEGANEQVQ 314
>gi|313225768|emb|CBY07242.1| unnamed protein product [Oikopleura dioica]
Length = 329
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 133/315 (42%), Positives = 192/315 (60%), Gaps = 19/315 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I E++S +KK + LPH LFYGPPGTGKTST++A +L+G
Sbjct: 8 LPWVEKYRPNKLDDLISHTEIISTIKKFIENEQLPHLLFYGPPGTGKTSTILAVAKELYG 67
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASD RGI V+R+++ FA + C FK++ILDE D+MT
Sbjct: 68 AKNLKKMVLELNASDARGIDVVRNEILNFASSRSLH-------CKGFKVIILDECDAMTR 120
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQAALRR MEK TK+ RFCLICNY+ +I + SRC++FRF PL+ M+ R+ ++ E+
Sbjct: 121 DAQAALRRVMEKFTKNVRFCLICNYLGKLIPAIQSRCTRFRFAPLSVEQMMPRINHVVEE 180
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + D ++ L++ + GDMRR++ LQ A + ++ V +VTG I ++
Sbjct: 181 EGIDIDQNGMDLLLKMAEGDMRRSLNILQ--ASHLAFNKVTDDIVYKVTGRPRRNDIRRM 238
Query: 272 LKVDSFQVLEKY----IEDLILEAYSATQ--LFDQFHDIVMSASSLSDKQKALILEKLAE 325
++ Q + KY IE+L+LE A L D + +I + L D KA IL LA+
Sbjct: 239 MEWLLNQDI-KYCMDSIEELMLENGIALNDVLTDLYEEI--CEADLPDIPKAEILSALAD 295
Query: 326 CNARLQDGASEYIQI 340
RL GA+E IQ+
Sbjct: 296 IEYRLNIGATEKIQL 310
>gi|403342743|gb|EJY70695.1| Replication factor C subunit 5 [Oxytricha trifallax]
Length = 324
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 192/319 (60%), Gaps = 21/319 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+P+VEKYRP ++ +I E+++ +++ + +PH LF+GPPGTGKTS +IA L+G
Sbjct: 5 LPFVEKYRPNDLESIISHDEIITTVRRFIETRKMPHLLFHGPPGTGKTSCVIAIAKHLYG 64
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTF--AQQTASGFNQDGKPCPPFKIVILDEADSM 149
Y+ ILELNASDDRGI V+R+++K+F QQ S K+VILDE DSM
Sbjct: 65 KAEYKNMILELNASDDRGINVVREQIKSFCSTQQLMS---------KGIKLVILDECDSM 115
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T +AQ ALRR +EK TK+TRFC ICNYVS II L SRC++FRF PL +L +L I
Sbjct: 116 TSSAQFALRRIVEKYTKTTRFCFICNYVSKIIPALQSRCTRFRFGPLQTENILPKLHEIA 175
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-I 268
E E++ D A E++V+ SGGDMR+ + L+SC+ + I ++V +VTG P+P+ I
Sbjct: 176 ELENLRLDQDAAESIVKLSGGDMRKVLNVLESCSL--AHKHITLQNVYDVTGR-PSPYDI 232
Query: 269 EKL---LKVDSFQVLEKYIEDLI-LEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
E + L D I L +++ S + + H VM L D+ K ++ ++A
Sbjct: 233 ENIYISLNNDRLNDALNTINSLKQVKSLSVEDIISEIHKKVMQTKML-DEMKIFLISRMA 291
Query: 325 ECNARLQDGASEYIQILDL 343
E R+ G+SE + + L
Sbjct: 292 EIEYRMAQGSSERVNLASL 310
>gi|156084582|ref|XP_001609774.1| replication factor C3 protein [Babesia bovis T2Bo]
gi|154797026|gb|EDO06206.1| replication factor C3 protein, putative [Babesia bovis]
Length = 348
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 190/327 (58%), Gaps = 18/327 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP++ D+I +++S L LPH LF+GPPGTGKTST++A L+G
Sbjct: 7 VPWVEKYRPESFSDIISHDDILSTLMNFAEKGQLPHLLFHGPPGTGKTSTIMAVSRYLYG 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGF-NQDGKPCPPFKIVILDEADS 148
++ELNASD+RGI+ +R+++KTFA+ + +SG D P K++ILDEAD
Sbjct: 67 SHRHSYVMELNASDERGIETVREQIKTFAETSNTFSSGIVGSDSGPRTNLKLIILDEADQ 126
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+AAQ +LRR ME + + RFCLICN+++ II P+ SRC+ FRF PL + + R I
Sbjct: 127 MTNAAQNSLRRIMEIYSSNVRFCLICNFMNRIIPPIQSRCTGFRFPPLKNDVVKRRTADI 186
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG--EGIVNEDVLEVTGVIPNP 266
+ E + AL+TL E GDMRR + CLQ A G + ++ DV+ T +PNP
Sbjct: 187 AKAEGLTVSECALDTLAEIGQGDMRRVLNCLQVTAMSIGATRDKVITSDVVISTAGLPNP 246
Query: 267 W-IEKLLK---VDSFQVLEKYIEDLI-LEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
I KLL+ +SF+ Y+ L ++ YS L + ++ D +I++
Sbjct: 247 TEISKLLQRLMQESFKDCVDYVVTLNQVQGYSVEDLVTALYRSILRI----DWPNVVIVQ 302
Query: 322 ---KLAECNARLQDGASEYIQILDLGS 345
+L + RL GAS YIQI L S
Sbjct: 303 LLIRLGDIEQRLSAGASPYIQIASLVS 329
>gi|344301880|gb|EGW32185.1| DNA replication factor C [Spathaspora passalidarum NRRL Y-27907]
Length = 323
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 193/315 (61%), Gaps = 19/315 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW+EKYRP+++DD+ QQE+++ + K + LPH LFYGPPGTGKTST+IA +++G
Sbjct: 5 LPWIEKYRPESLDDIYGQQEIITTVHKFIQTGKLPHLLFYGPPGTGKTSTIIAVAREIYG 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y+ +LELNASDDRGI V+R+++K FA T FNQ FK++ILDEAD+MT+A
Sbjct: 65 KNYKNMVLELNASDDRGIDVVRNQIKNFA-STRQIFNQGN----SFKLIILDEADAMTNA 119
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ +LRR +EK TK+ RFC++ NY + L SRC++FRF P+ + R++ + +E
Sbjct: 120 AQNSLRRIIEKFTKNCRFCILANYSHKLNPALISRCTRFRFHPIDTEAIRERIKVVITKE 179
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW----- 267
V D KA++ LV+ S GDMRRA+ LQ+C G I + + E G P+P
Sbjct: 180 QVDIDAKAVDALVQLSKGDMRRALNVLQACKAATAGS-IDLDMIYECIGA-PHPQDIETV 237
Query: 268 IEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
++ +LK D ++ + K+ + + L F DI ++ L++K + IL+ L+
Sbjct: 238 LDSILKDDWTTAYITINKF---KTTKGLALIDLIAGFVDI-LNNYKLNNKTRVGILKGLS 293
Query: 325 ECNARLQDGASEYIQ 339
+ + G ++ IQ
Sbjct: 294 DIEYGISKGGNDKIQ 308
>gi|402590253|gb|EJW84184.1| Rfc4 protein [Wuchereria bancrofti]
Length = 286
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 118/264 (44%), Positives = 173/264 (65%), Gaps = 7/264 (2%)
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDM--YRERILELNASDDRGIQVIRDKVKTFAQQ 123
LP+ LFYGPPGTGKTS IA C QLF + YR+R++E+NASD+RGI ++R+K+K FA++
Sbjct: 12 LPNLLFYGPPGTGKTSAAIALCRQLFRNTVTYRDRVMEMNASDERGINIVRNKIKEFARR 71
Query: 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
S DG P K++ILDEAD+MT AQAALRRTME+E+++TRF LICNY++ II P
Sbjct: 72 AVSSHLPDGSPVVGLKVIILDEADAMTTPAQAALRRTMERESRTTRFFLICNYITRIIDP 131
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
LTSRC+KFRFK ++ + RL++IC+ E++ D A+ L+E GDMR+++T LQ+ +
Sbjct: 132 LTSRCAKFRFKSISSESQEKRLEWICQNENIEFDPLAISELIELCDGDMRKSVTALQTIS 191
Query: 244 RLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQ 300
+ ++ DV + G +P+ +++ + + + L IE++ E Y QL Q
Sbjct: 192 --SCHKKLIPTDVRQFLGAVPDDVVQQFVASCRSLNHNQLYACIENIRREGYGVYQLLKQ 249
Query: 301 FHDIVMSASSLSDKQKALILEKLA 324
F I + L+D KA I EK+
Sbjct: 250 FFYICLRLEDLTDLNKATICEKIG 273
>gi|405123808|gb|AFR98571.1| DNA replication factor [Cryptococcus neoformans var. grubii H99]
Length = 373
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 131/316 (41%), Positives = 188/316 (59%), Gaps = 16/316 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV+ +++ S ++K + LPH L YGPPGTGKTST++A +L+G
Sbjct: 54 LPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYG 113
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR+ ILELNASDDRGI V+R+++K FA T F++ FK+VILDEAD MT A
Sbjct: 114 PAYRKHILELNASDDRGIDVVREQIKNFA-MTKVLFSKG------FKLVILDEADMMTQA 166
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ TK+ RFC++CNYV+ I + SRC++FRF PL E + ++ + ++E
Sbjct: 167 AQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKE 226
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPW-IEK 270
V + L++ S GDMRRA+ LQ+C IV+E V TG P+P IE+
Sbjct: 227 GVNLTDDGRDALLKLSRGDMRRALNVLQAC---HAAYDIVDETAVYNCTGN-PHPRDIER 282
Query: 271 LLK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
+++ VD F I L +E A Q + L + + +L+ L
Sbjct: 283 VVQSMMVDEFGTAYSLITTLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTE 342
Query: 328 ARLQDGASEYIQILDL 343
RL G SE +Q+ L
Sbjct: 343 HRLSLGGSEKMQLTAL 358
>gi|82540400|ref|XP_724521.1| replication factor C3 [Plasmodium yoelii yoelii 17XNL]
gi|23479189|gb|EAA16086.1| replication factor C3 [Plasmodium yoelii yoelii]
Length = 344
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 129/325 (39%), Positives = 193/325 (59%), Gaps = 16/325 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+I ++V+S ++K + +LPH L +GPPGTGKTST++A C +L+G
Sbjct: 13 IPWVEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYG 72
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ +LELNASDDRGI V+R+++KTFA ++ + +N + K++ILDEAD MT
Sbjct: 73 ESRSSFVLELNASDDRGITVVREQIKTFA-ESKNHYNICERTS--LKLIILDEADHMTFP 129
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ A+RR ME K+ RFCLICNYV+ I + SRC+ FRF PL E ML + I + E
Sbjct: 130 AQNAMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSE 189
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----W 267
+V +E+L+ GDMRR + CLQ + L +++E+V+ T IP P
Sbjct: 190 NVNLTKNGVESLIRVGRGDMRRILNCLQVVS-LSHKNMVIDENVILSTLDIPLPSEIKFI 248
Query: 268 IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
+E L K +S++++ K ED + YS + ++ V++ D L+L+
Sbjct: 249 LEHLTKSTIKESYEIITKLQED---KGYSIKDIMICLYETVLTY-DYPDSAICLLLKNFG 304
Query: 325 ECNARLQDGASEYIQILDLGSIVIK 349
E R GA+E I + L S I+
Sbjct: 305 EIEERCASGATEQITLSSLISAFIE 329
>gi|426247312|ref|XP_004017430.1| PREDICTED: replication factor C subunit 5 isoform 1 [Ovis aries]
Length = 336
Score = 234 bits (598), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 140/337 (41%), Positives = 193/337 (57%), Gaps = 28/337 (8%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+ K + K RN +PWVEKYRP+T+DD+I Q+++S ++K +S LPH L YGPP
Sbjct: 4 SAHKQQQPEAAKIRN--LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPP 61
Query: 76 GTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
GTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 62 GTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG--- 117
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF
Sbjct: 118 ---FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 174
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL M+ RL+++ E+E V ++ L+ S GDMRRA+ LQS G + E
Sbjct: 175 PLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEE 232
Query: 255 DVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFD--QFHDIV------M 306
V TG +P LK D +L+ + AY + HDI+ +
Sbjct: 233 TVYTCTG---HP-----LKSDIANILDWMLNQDFTTAYRKLKTLKGLALHDILTEIHLFV 284
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G SE IQ+ L
Sbjct: 285 HRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQLSSL 321
>gi|242211529|ref|XP_002471602.1| predicted protein [Postia placenta Mad-698-R]
gi|220729278|gb|EED83155.1| predicted protein [Postia placenta Mad-698-R]
Length = 350
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 190/321 (59%), Gaps = 20/321 (6%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP T+DDV+ +++ S ++K + LPH LFYGPPGTGKTST++A +
Sbjct: 28 NDNLPWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARR 87
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
++G YR++ILELNASDDRGI V+R+++K FA +T + F +K++ILDEAD M
Sbjct: 88 IYGKDYRKQILELNASDDRGIDVVREQIKNFA-ETRTLF------LKGYKLIILDEADMM 140
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQAALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + RL +
Sbjct: 141 TTAAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVERRLSGVI 200
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-- 267
E E V + L++ S GDMRRA+ LQ+C ++ ED E+ NP
Sbjct: 201 EAEGVKLTEDGKKALLKLSKGDMRRALNVLQAC---HAAYDLIGED--EIYNCTGNPHPT 255
Query: 268 -IEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
IE ++ D F K I L +E + L + ++ + + + +L+
Sbjct: 256 DIESVVNSMLSDDFTTSYKMISALKVERGLALPDLINGAYEYIETI-DFKPHARIYLLDF 314
Query: 323 LAECNARLQDGASEYIQILDL 343
LA RL GA+E IQ+ L
Sbjct: 315 LATTEHRLSSGANEKIQLTAL 335
>gi|448611174|ref|ZP_21661808.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
gi|445743606|gb|ELZ95087.1| replication factor C small subunit [Haloferax mucosum ATCC
BAA-1512]
Length = 379
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 183/309 (59%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DD+ Q+E+V L + DLPH LF GP G GKT++ A ++GD
Sbjct: 69 WIEKYRPQTLDDIYGQEEIVERLCSYIERDDLPHLLFAGPAGVGKTTSATAIARAIYGDD 128
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD RGI V+RD++K FA+ + G + ++I+ LDEADS+T+ AQ
Sbjct: 129 WRGNFLELNASDQRGIDVVRDRIKNFARSSFGGHD--------YRIIFLDEADSLTNDAQ 180
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + + + I E E +
Sbjct: 181 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLGDDAIADQTRDIAETEEI 240
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
L+ LV +GGDMRRAI LQ+ A GE + E V +T IEK+++
Sbjct: 241 ELTEDGLDALVYAAGGDMRRAINSLQAAATT--GEVVDEEAVYMITSTARPEDIEKMVRA 298
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
F K +E LI++ + + DQ H V L ++ ++E++ E + R+
Sbjct: 299 AIDGEFTAARKQLETLIVDTGMAGGDIIDQLHRSVWE-FDLDERAAVRLMERIGETDYRI 357
Query: 331 QDGASEYIQ 339
+GA+E +Q
Sbjct: 358 SEGANEQVQ 366
>gi|167393611|ref|XP_001740649.1| replication factor C subunit [Entamoeba dispar SAW760]
gi|165895162|gb|EDR22913.1| replication factor C subunit, putative [Entamoeba dispar SAW760]
Length = 329
Score = 234 bits (597), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 123/303 (40%), Positives = 195/303 (64%), Gaps = 11/303 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+DDV Q+EV+ +LK L LP+ LF+GPPG+GKT++++A H+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLDSG-LPNLLFFGPPGSGKTTSILAVAHELFQGY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ER+LELNAS+ RGI+++R +K +A Q + + DG P +K++ILDE+D++T AQ
Sbjct: 66 FKERVLELNASNQRGIEMVRTTLKNYAMQDVTHY--DG--IPDYKLIILDESDALTPDAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME TK+TRFCLICNY+S I+ P++SRC KFRF L + + RLQ ICE+E
Sbjct: 122 TALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGF 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
+A++ + S GD+R I LQ ++ + +D+ V GV+P+ I +++ +
Sbjct: 182 SVTNEAIQAVSILSEGDLRYGIGLLQKLSQ-GINHSVTPQDISNVAGVVPSKEITEIIHL 240
Query: 275 -DSFQVLEKYIEDLIL---EAYSATQLFDQFHDIVM-SASSLSDKQKALILEKLAECNAR 329
+ V + Y++ + L + YSA + Q D+ + +L+++++ L L+ +A+ +A
Sbjct: 241 CQNGSVNDLYLKAMSLVVEQNYSADSILSQLRDVYIEDCVNLTNQERCLFLQLIAQSDAT 300
Query: 330 LQD 332
L D
Sbjct: 301 LID 303
>gi|409041157|gb|EKM50643.1| hypothetical protein PHACADRAFT_152803 [Phanerochaete carnosa
HHB-10118-sp]
Length = 358
Score = 234 bits (596), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 134/316 (42%), Positives = 188/316 (59%), Gaps = 16/316 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV+ +++ S ++K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 40 LPWVEKYRPVTLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG 99
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR++ILELNASDDRGI V+R+++K FA +T + F++ +K++ILDEAD MT A
Sbjct: 100 KDYRKQILELNASDDRGIDVVREQIKNFA-ETRTLFSKG------YKLIILDEADMMTTA 152
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + R+ + E E
Sbjct: 153 AQAALRRVIEQYTKNVRFCIICNYVNKIIPAVQSRCTRFRFSPLPVPEVERRINGVIETE 212
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW----I 268
V + L++ S GDMRRA+ LQ+C G +V TG P+P I
Sbjct: 213 GVKITGDGRKALLKLSKGDMRRALNVLQACHAAYDETG--EREVYHCTGT-PDPADIANI 269
Query: 269 EKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQKALILEKLAECN 327
+ D F K I L + A Q L + ++ V L + +L+ A
Sbjct: 270 VNSMFSDEFTTSYKMISSLKTDRGLALQDLLNGAYEYV-DELELKPHARIYLLDYFATAE 328
Query: 328 ARLQDGASEYIQILDL 343
RL GASE IQ+ L
Sbjct: 329 YRLSAGASEKIQLTAL 344
>gi|67478786|ref|XP_654775.1| Replication factor C subunit 4 [Entamoeba histolytica HM-1:IMSS]
gi|56471850|gb|EAL49389.1| Replication factor C subunit 4, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449704169|gb|EMD44462.1| replication factor C subunit 4, putative [Entamoeba histolytica
KU27]
Length = 329
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 196/303 (64%), Gaps = 11/303 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+DDV Q+EV+ +LK L+ LP+ LF+GPPG+GKT++++A H+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELFQGY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ER+LELNAS+ RGI+++R +K +A Q + + DG P +K++ILDE+D++T AQ
Sbjct: 66 FKERVLELNASNQRGIEMVRTTLKNYAMQDVTHY--DGTP--DYKLIILDESDALTPDAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME TK+TRFCLICNY+S I+ P++SRC KFRF L + + RLQ ICE+E
Sbjct: 122 TALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGF 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
+A++ + S GD+R I LQ ++ + +D+ V GV+P+ I +++ +
Sbjct: 182 SVTNEAIQAVSILSEGDLRYGIGLLQKLSQ-GINHSVTPQDISNVAGVVPSKEITEIIHL 240
Query: 275 -DSFQVLEKYIEDLIL---EAYSATQLFDQFHDIVM-SASSLSDKQKALILEKLAECNAR 329
+ V + Y++ + L + +SA + Q D+ + +L+++++ L L+ +A+ +A
Sbjct: 241 CQNGSVNDLYLKAMSLVVEQNFSADSILSQLRDVYIEDCVNLTNQERCLFLQLIAQSDAT 300
Query: 330 LQD 332
L D
Sbjct: 301 LID 303
>gi|268569884|ref|XP_002648361.1| C. briggsae CBR-RFC-4.2 protein [Caenorhabditis briggsae]
gi|268573696|ref|XP_002641825.1| C. briggsae CBR-RFC-4.1 protein [Caenorhabditis briggsae]
Length = 335
Score = 234 bits (596), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 116/223 (52%), Positives = 155/223 (69%), Gaps = 4/223 (1%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+ K + W EKYRPKT+DD+ Q+EVV++LK L G DLPH LFYGPPGTGKTST +A C
Sbjct: 12 KQKVLTWTEKYRPKTLDDIAHQEEVVTMLKGALQGKDLPHLLFYGPPGTGKTSTALAFCR 71
Query: 89 QLF-GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QLF ++R+R+L+LNASD+RGI V+R K++ F++ T N++ KI+ILDE D
Sbjct: 72 QLFPSSIFRDRVLDLNASDERGISVVRQKIQAFSKTTLGSSNKED--VLRLKIIILDEVD 129
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQAA+RR +E +K+TRF LICNYVS +I P+ SRC+KFRFK L + RL+
Sbjct: 130 AMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEVQVQRLRT 189
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR-LKGGE 249
IC+ E L+ ++E S GD+RRA+ LQS A LK G+
Sbjct: 190 ICDAEGTPMSEDELKQVMEYSEGDLRRAVCTLQSLAPILKNGD 232
>gi|323454913|gb|EGB10782.1| hypothetical protein AURANDRAFT_71065 [Aureococcus anophagefferens]
Length = 747
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 191/328 (58%), Gaps = 19/328 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++D+++ ++++SVL++ + LPH L YGPPGTGKTST++AA ++G
Sbjct: 426 PWVEKYRPSSLDELVAHKDIISVLRRLIEADKLPHTLLYGPPGTGKTSTILAAAKDMYGA 485
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
Y+ LELNASDDRGI V+RD++K FA T F++ K++ILDEAD MT A
Sbjct: 486 GYKSMTLELNASDDRGIDVVRDQIKEFA-GTRRLFSKG------IKLIILDEADMMTKDA 538
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR +EK T + RFCLICNY + II L SRC+KFRF PLA + + R+ I +E+
Sbjct: 539 QFALRRVIEKYTANARFCLICNYANKIIPALQSRCTKFRFAPLAPDQIAGRVADIVRREN 598
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL-- 271
V KA + L+E GDMRR + LQ+ A GE + E + VTG NP + +
Sbjct: 599 VAIGTKATDALLELGKGDMRRVLNVLQAAAVAYPGE-VTYESLFLVTG---NPLPDHVDA 654
Query: 272 ----LKVDSFQVLEKYIEDLI-LEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
L D+F + DL + Y+ L + + V+ A+ L + KA +L KLA+
Sbjct: 655 IFASLLNDTFDAARTLLGDLCKTQGYALPDLLTRINAKVV-AAKLPNAAKAHVLTKLADI 713
Query: 327 NARLQDGASEYIQILDLGSIVIKANKTA 354
R + +Q+ L S + A A
Sbjct: 714 EYRCAFATTTELQLSSLVSAFVVARGLA 741
>gi|225716862|gb|ACO14277.1| Replication factor C subunit 5 [Esox lucius]
Length = 335
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 137/326 (42%), Positives = 196/326 (60%), Gaps = 31/326 (9%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
++RN +PWVEKYRP+T+DD+I ++++S ++K +S LPH LFYGPPGTGK ST++A
Sbjct: 10 QSRN--LPWVEKYRPQTLDDLISHKDILSTIQKFISEDRLPHLLFYGPPGTGKISTILAC 67
Query: 87 CHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
QL+ D + +LELNASDDRGI V+R + +FA T + F + FK+VILDE
Sbjct: 68 AKQLYKDKEFNAMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------FKLVILDE 120
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++ RF PL+++ M+ RL
Sbjct: 121 ADAMTRDAQNALRRVIEKYTENTRFCLICNYLSKIIPALQSRCTRSRFGPLSQDQMIPRL 180
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPN 265
+++ +QES+ ++ +V S GDMRR++ LQS + G + ++V TG +
Sbjct: 181 EHVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSMAYG--KVTEDNVYTCTG---H 235
Query: 266 PWIEKLLKVDSFQVLE---------KYIEDLILEAYSATQLFDQFHDI--VMSASSLSDK 314
P L+ D +LE Y + L L+ L D +I V+
Sbjct: 236 P-----LRSDIANILEWALNKDFSTAYKQTLQLKTLKGLALHDILTEIHLVIHRVDFPPA 290
Query: 315 QKALILEKLAECNARLQDGASEYIQI 340
+ +L KLAE RL G SE IQ+
Sbjct: 291 IRMGLLIKLAEIEYRLASGTSEKIQL 316
>gi|407043555|gb|EKE42013.1| replication factor C subunit 4, putative [Entamoeba nuttalli P19]
Length = 329
Score = 233 bits (595), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 122/303 (40%), Positives = 196/303 (64%), Gaps = 11/303 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+DDV Q+EV+ +LK L+ LP+ LF+GPPG+GKT++++A H+LF
Sbjct: 7 WSEKYRPKTLDDVQGQEEVIKLLKSSLNSG-LPNLLFFGPPGSGKTTSILAVAHELFQGY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ER+LELNAS+ RGI+++R +K +A Q + + DG P +K++ILDE+D++T AQ
Sbjct: 66 FKERVLELNASNQRGIEMVRTTLKNYAMQDVTHY--DG--IPDYKLIILDESDALTPDAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME TK+TRFCLICNY+S I+ P++SRC KFRF L + + RLQ ICE+E
Sbjct: 122 TALRRMMEDFTKNTRFCLICNYISRILPPISSRCIKFRFSALPKEIVSNRLQMICEKEGF 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
+A++ + S GD+R I LQ ++ + +D+ V GV+P+ I +++ +
Sbjct: 182 SVTNEAIQAVSILSEGDLRYGIGLLQKLSQ-GINHSVTPQDISNVAGVVPSKEITEIIHL 240
Query: 275 -DSFQVLEKYIEDLIL---EAYSATQLFDQFHDIVM-SASSLSDKQKALILEKLAECNAR 329
+ V + Y++ + L + +SA + Q D+ + +L+++++ L L+ +A+ +A
Sbjct: 241 CQNGSVNDLYLKAMSLVVEQNFSADSILSQLRDVYIEDCVNLTNQERCLFLQLIAQSDAT 300
Query: 330 LQD 332
L D
Sbjct: 301 LID 303
>gi|302665246|ref|XP_003024235.1| replication factor C subunit [Trichophyton verrucosum HKI 0517]
gi|291188282|gb|EFE43624.1| replication factor C subunit [Trichophyton verrucosum HKI 0517]
Length = 336
Score = 233 bits (595), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 133/325 (40%), Positives = 187/325 (57%), Gaps = 50/325 (15%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFA-----Q 122
LFYG PGTGKTST++A LFG + R R+LELNASD+RGI ++R+K+K FA Q
Sbjct: 1 MLFYGSPGTGKTSTILAMSKSLFGPALVRSRVLELNASDERGINIVREKIKDFARMHLSQ 60
Query: 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
A + PCPPFKI+ILDEADSMTH AQ+ALRRTMEK ++ TRFCL+CNYV+ II
Sbjct: 61 PPADPAYRSQYPCPPFKIIILDEADSMTHDAQSALRRTMEKYSRITRFCLVCNYVTRIID 120
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
P+ SRCSKFRFK L + +RL I E + + +ETL+ S GD+R+AIT +QS
Sbjct: 121 PVASRCSKFRFKVLDGSAAQSRLVEIARMEKLDLEDNVVETLLRCSDGDLRKAITFMQSS 180
Query: 243 ARL-KGGEG------------------IVNEDVLEVTGVIPNPWIEKLL-------KVDS 276
ARL + G G I + EV+G++P +++++ +
Sbjct: 181 ARLARYGSGKKKDSSDKEMELDDVKPRITVRSIEEVSGLVPETVMQRVVAALRPSKRASK 240
Query: 277 FQVLEKYIEDLILEAYSATQLFDQF------------------HDIVMSASSLSDKQKAL 318
++ + + DL+ + +SA+Q+ Q + V+ S+SD QK
Sbjct: 241 YEEISSLVADLVADGWSASQVLSQVYLLLPQPLRNVLLTSFKTYQAVLQDESISDVQKNQ 300
Query: 319 ILEKLAECNARLQDGASEYIQILDL 343
IL+ +E + RL DGA E++ LD
Sbjct: 301 ILKVCSEFDKRLVDGADEHLSTLDF 325
>gi|448417391|ref|ZP_21579327.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
gi|445677879|gb|ELZ30375.1| replication factor C small subunit [Halosarcina pallida JCM 14848]
Length = 329
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 188/310 (60%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T++DV Q+++V L+ + DLPH LF GP G GKT++ A ++GD
Sbjct: 16 WIEKYRPQTLEDVYGQEDIVDRLRSYIEQDDLPHLLFAGPAGVGKTTSATAIARAVYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G++ ++I+ LDEADS+T AQ
Sbjct: 76 WRGNFLELNASDERGIDVVRDRIKNFARASFGGYD--------YRIIFLDEADSLTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL ++ + +++ I E E +
Sbjct: 128 SALRRTMEQFSDNTRFVLSCNYSSKIIDPIQSRCAVFRFSPLGDDAVRKQVEAIAETEGI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV +GGDMRRAI LQ+ A GE + E V +T IE++++
Sbjct: 188 ELTEDGLDALVYAAGGDMRRAINSLQAAA--TTGEVVDEEAVYLITSTARPEDIEEMVQS 245
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F +E L+++ + + DQ H V L ++ ++E++ E + R+
Sbjct: 246 AIDGEFLAARSKLETLLVDTGMAGGDIIDQLHRSVWE-FDLDERATVRLMERIGEADYRI 304
Query: 331 QDGASEYIQI 340
+GA+E +Q+
Sbjct: 305 TEGANEQVQL 314
>gi|148233376|ref|NP_001080677.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus laevis]
gi|27882432|gb|AAH44712.1| Rfc5-prov protein [Xenopus laevis]
Length = 335
Score = 233 bits (594), Expect = 9e-59, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 196/324 (60%), Gaps = 21/324 (6%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
++RN +PWVEKYRP+T+DD+I Q+++S +++ +S LPH LFYGPPGTGKTST++A
Sbjct: 11 QSRN--LPWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILAC 68
Query: 87 CHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDE
Sbjct: 69 AKQLYKDREFNSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDE 121
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+ + M+ RL
Sbjct: 122 ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSDMMIPRL 181
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGV-- 262
+++ ++E V ++ LV S GDMRR++ LQS G V ED V TG
Sbjct: 182 EHVVKEERVDISPDGMKALVTLSNGDMRRSLNILQST---NMAYGKVTEDTVYTCTGHPL 238
Query: 263 ---IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
I N ++ +L D + +E L+ + + + H + + + + +
Sbjct: 239 RSDIAN-ILDWMLNKDFTSAYKNIMELKTLKGLALHDILTEVH-LYVHRVNFPASVRMHL 296
Query: 320 LEKLAECNARLQDGASEYIQILDL 343
L K+A+ RL G SE IQ+ L
Sbjct: 297 LVKMADIEYRLASGTSEKIQLSSL 320
>gi|134118754|ref|XP_771880.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254484|gb|EAL17233.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 373
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 185/315 (58%), Gaps = 14/315 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV+ +++ S ++K + LPH L YGPPGTGKTST++A +L+G
Sbjct: 54 LPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYG 113
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR+ ILELNASDDRGI V+R+++K FA T F++ FK+VILDEAD MT A
Sbjct: 114 PAYRKHILELNASDDRGIDVVREQIKNFA-MTKVLFSKG------FKLVILDEADMMTQA 166
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ TK+ RFC++CNYV+ I + SRC++FRF PL E + ++ + ++E
Sbjct: 167 AQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKE 226
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKL 271
V + L++ S GDMRRA+ LQ+C IV+E + P+P IE++
Sbjct: 227 GVNLTDDGRDALLKLSRGDMRRALNVLQAC---HAAYDIVDETAVYNCTGNPHPRDIERV 283
Query: 272 LK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
++ D F I L +E A Q + L + + +L+ L
Sbjct: 284 VQSMMADEFGTAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEH 343
Query: 329 RLQDGASEYIQILDL 343
RL G SE +Q+ L
Sbjct: 344 RLSLGGSEKMQLTAL 358
>gi|58331833|ref|NP_001011112.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
gi|54038730|gb|AAH84510.1| replication factor C (activator 1) 5 [Xenopus (Silurana)
tropicalis]
gi|89268121|emb|CAJ83540.1| replication factor C (activator 1) 5, 36.5kDa [Xenopus (Silurana)
tropicalis]
Length = 335
Score = 233 bits (594), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 196/325 (60%), Gaps = 21/325 (6%)
Query: 26 GKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
G++RN +PWVEKYRP+T+DD+I Q+++S +++ +S LPH LFYGPPGTGKTST++A
Sbjct: 10 GQSRN--LPWVEKYRPQTLDDLISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILA 67
Query: 86 ACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILD
Sbjct: 68 CAKQLYKDREFNSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILD 120
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+ M+ R
Sbjct: 121 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPEMMVPR 180
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGV- 262
L+++ ++E V ++ LV S GDMRR++ LQS G V ED V TG
Sbjct: 181 LEHVVKEECVDISPDGMKALVTLSNGDMRRSLNILQST---NMAYGKVTEDTVYTCTGHP 237
Query: 263 ----IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
I N ++ +L D + +E L+ + + + H V + + L
Sbjct: 238 LRSDIAN-ILDWMLNKDFTSAYKNIMELKTLKGLALHDILTEVHLYVHRVDFPASVRMHL 296
Query: 319 ILEKLAECNARLQDGASEYIQILDL 343
++ K+A+ RL G SE IQ+ L
Sbjct: 297 LI-KMADVEYRLASGTSEKIQLSSL 320
>gi|225718872|gb|ACO15282.1| Replication factor C subunit 5 [Caligus clemensi]
Length = 345
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 195/323 (60%), Gaps = 20/323 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK + D++ +++V +++ + + +PH LFYGPPGTGKTS ++AA ++FG
Sbjct: 15 LPWVEKYRPKDLSDLVSHEDIVGTIRRFVKESRMPHMLFYGPPGTGKTSAILAASREVFG 74
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ +LELNASDDRGI V R ++ FA Q G FK++ILDEAD+MT+
Sbjct: 75 ETSNSSVLELNASDDRGIDVARGRILNFASTKRIAI-QAGTAS--FKLIILDEADAMTND 131
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK T + RFCLICNY+S II L SRC++FRF PLA +L RLQ + ++E
Sbjct: 132 AQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFAPLASEQILPRLQAVVKEE 191
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIP----NPW 267
S+ + L+ + GDMRR + LQSC+ ++NE ++ TG P +
Sbjct: 192 SLEMSPDGAKALLTLAKGDMRRILNILQSCSM---AFPVINESNIYACTGHPPPSDISLA 248
Query: 268 IEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
+E LL D ++Q + +++ + S + + H +++ +S++ K +L KLA
Sbjct: 249 LESLLNDDLQKAYQTI--HVQLQTTKGLSLIDILTELH-LLVHRLEISNRVKVKLLIKLA 305
Query: 325 ECNARLQDGASEYIQILDLGSIV 347
+ RL G SE IQ LG++V
Sbjct: 306 DAEHRLLSGTSEKIQ---LGAVV 325
>gi|429216858|ref|YP_007174848.1| DNA polymerase III, subunit gamma/tau [Caldisphaera lagunensis DSM
15908]
gi|429133387|gb|AFZ70399.1| DNA polymerase III, gamma/tau subunit [Caldisphaera lagunensis DSM
15908]
Length = 333
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 184/311 (59%), Gaps = 15/311 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+T+ D+I QQ++ + L K + ++PH LF GPPGTGKT+ A H L+G+
Sbjct: 17 WTEKYRPRTLKDIINQQDITTRLMKFVQEKNMPHLLFAGPPGTGKTTAAHALAHDLYGES 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
Y++ +LELNASD+RGI IR+KVK FA+ P PFKIV+LDEAD+MT AQ
Sbjct: 77 YQQFMLELNASDERGIDTIREKVKEFARSKTP-------PEIPFKIVLLDEADNMTSDAQ 129
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + STRF L NY S II P+ SRC+ FRF L + ++ RL+YI ++E V
Sbjct: 130 QALRRLMELYSASTRFILAANYPSKIIDPIQSRCAFFRFTSLKKEDVIDRLKYIADKEGV 189
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP----NPWIEK 270
+ AL+ + E S GDMR+AI LQ+ A L + +E V +V G+ IE
Sbjct: 190 DYEEDALDIIFEISEGDMRKAINILQASAYLG---KVTSELVFKVVGMARPKDITDMIET 246
Query: 271 LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNAR 329
LK + + E + +I S + Q H +M ++D+ + LI + L E + R
Sbjct: 247 ALKGNFIEAREILRKVMIEYGLSGEDVVKQIHREIMGPDIKINDELRVLIADYLGEIHFR 306
Query: 330 LQDGASEYIQI 340
+ +G+ E IQ+
Sbjct: 307 ISEGSDEDIQL 317
>gi|302687482|ref|XP_003033421.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
gi|300107115|gb|EFI98518.1| hypothetical protein SCHCODRAFT_54371 [Schizophyllum commune H4-8]
Length = 343
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 137/338 (40%), Positives = 189/338 (55%), Gaps = 29/338 (8%)
Query: 20 TSVSTSGKTRNKP-----VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
T+ GK + P +PWVEKYRP T+DDV+ +++ + + K + LPH LFYGP
Sbjct: 8 TAAKGKGKAADHPYDDDSLPWVEKYRPVTLDDVVSHKDITTTIDKFIEKNRLPHLLFYGP 67
Query: 75 PGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
PGTGKTST++A +++G YR++ILELNASDDRGI V+R+++K FA +T + F++
Sbjct: 68 PGTGKTSTILAVARRIYGPEYRKQILELNASDDRGIDVVREQIKQFA-ETRTLFSKG--- 123
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK+VILDEAD MT AAQAALRR +E+ T++ RFC+ICNYV I + SRC++FRF
Sbjct: 124 ---FKLVILDEADMMTQAAQAALRRVIEQYTRNVRFCIICNYVGKIAPAIQSRCTRFRFS 180
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL + R+ + E E V L+ + GDMRR + LQ+C E I
Sbjct: 181 PLPIKEVERRVDLVIEAEGVTITPDGKAALLRLARGDMRRVLNVLQAC--YAAYEKITEN 238
Query: 255 DVLEVTGVIPNPW-IEKLLKV---DSFQVLEKYIEDLILEAYSATQ-----LFDQFHDIV 305
+V TG P+P IE ++ D F + I + E A Q FD I
Sbjct: 239 EVYACTGA-PHPADIETIVNSMLGDEFTTAYEMISKMKTERGLALQDLTAGAFDYIDTI- 296
Query: 306 MSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
L + +L+ LA RL G SE IQ+ L
Sbjct: 297 ----ELKPHARIYLLDHLATTEHRLSTGGSEKIQMTAL 330
>gi|149720613|ref|XP_001490846.1| PREDICTED: replication factor C subunit 5 [Equus caballus]
Length = 340
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 142/342 (41%), Positives = 198/342 (57%), Gaps = 33/342 (9%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
AP +++ + K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YG
Sbjct: 5 APEQQQSAAT--AKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYG 60
Query: 74 PPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PPGTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 61 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFA-STRTIFKKG- 118
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FR
Sbjct: 119 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFR 173
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F PL M+ RLQ++ E+E V ++ LV S GDMRRA+ LQS G +
Sbjct: 174 FGPLTPELMVPRLQHVVEEEKVAISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVT 231
Query: 253 NEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAY-SATQLFD----QFHDIVMS 307
E V TG +P LK D +L+ + AY + T+L HDI+
Sbjct: 232 EETVYTCTG---HP-----LKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTE 283
Query: 308 ASSLSDK------QKALILEKLAECNARLQDGASEYIQILDL 343
+ + +L K+A+ RL G +E IQ+ L
Sbjct: 284 IHLFVHRVDFPTSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 325
>gi|403415842|emb|CCM02542.1| predicted protein [Fibroporia radiculosa]
Length = 358
Score = 233 bits (593), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 201/337 (59%), Gaps = 19/337 (5%)
Query: 15 PSSSK---TSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
PS +K +V +G + +PWVEKYRP ++DD++ +++ S ++K + LPH LF
Sbjct: 18 PSEAKGKGKAVELNGGHDIENLPWVEKYRPVSMDDIVSHKDITSTIEKFIEKNQLPHLLF 77
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
YGPPGTGKTST++A +++G+ YR++ILELNASDDRGI V+R+++K FA +T + F +
Sbjct: 78 YGPPGTGKTSTILAVARRIYGNDYRKQILELNASDDRGIDVVREQIKNFA-ETRTLFLKG 136
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
+K++ILDEAD MT AAQAALRR +E+ TK+ RFC+ICNYV+ II + SRC++F
Sbjct: 137 ------YKLIILDEADMMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRF 190
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
RF PL + RL + E E V + L++ S GDMRRA+ LQ+C + I
Sbjct: 191 RFSPLPIPEVERRLNSVIEAEGVKLTEDGKKALLKLSKGDMRRALNVLQACH--AAFDLI 248
Query: 252 VNEDVLEVTGVIPNPW-IEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVM 306
+ + TG P+P IE ++ D F K I L +E + L + ++ +
Sbjct: 249 GEAQIYDCTGS-PHPSDIETVVNSMLSDDFTTSYKMISALKVERGLALPDLINGAYEYIE 307
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ + +L+ LA RL GASE IQ+ L
Sbjct: 308 TI-DFKPHVRVYVLDFLATTEHRLSTGASEKIQLTAL 343
>gi|401410508|ref|XP_003884702.1| hypothetical protein NCLIV_050990 [Neospora caninum Liverpool]
gi|325119120|emb|CBZ54672.1| hypothetical protein NCLIV_050990 [Neospora caninum Liverpool]
Length = 387
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/344 (37%), Positives = 196/344 (56%), Gaps = 34/344 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRP+ ++++ Q+E +L++ L ++PH LFYGPPGTGKTS +A +LFG
Sbjct: 34 VPWVEKYRPRRVEEMAHQEEPKKMLRRILETGNMPHLLFYGPPGTGKTSAALALVRELFG 93
Query: 93 -DMYRERILELNASDDRG---------------------------IQVIRDKVKTFAQ-Q 123
+ + R+LELNASDDRG I+V+R+++K + +
Sbjct: 94 REEAKNRLLELNASDDRGKRKPNGVCLGSGETVRRGAPIKQDRNSIKVVRERIKQYTKTN 153
Query: 124 TASG-FN-QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
A G N + G+ P +KIVILDEAD MT AQ+ALRR ME +++TRF +ICNYV II
Sbjct: 154 IAKGKINPETGREMPAWKIVILDEADMMTQDAQSALRRIMEAFSRTTRFIIICNYVHKII 213
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
P+ SRCS RF+P+A R+++ICE E + A++ L+ S GD+RRA+T LQS
Sbjct: 214 DPIFSRCSPHRFEPVAREAQKARIRHICESEGLAVTTGAVDALLRISQGDLRRAVTLLQS 273
Query: 242 CARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV--DSFQVLEKYIEDLILEAYSATQLFD 299
A + + + + +LEV G P + L+ S ++++I + + L
Sbjct: 274 AASIY-DDNLTEDAILEVAGQPPARIVTDFLRACQASPDAASSEVDNVISQGWDVCLLLQ 332
Query: 300 QFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ V+ + L D QKA ++ +A+ + GAS Y+Q+L L
Sbjct: 333 EMIRQVVISPHLKDLQKARVVNDIAQKEYAVFQGASPYLQLLSL 376
>gi|410923359|ref|XP_003975149.1| PREDICTED: replication factor C subunit 5-like [Takifugu rubripes]
Length = 335
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 198/327 (60%), Gaps = 19/327 (5%)
Query: 22 VSTSGKT--RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
+S++ KT + + +PWVEKYRP+ +DD+I ++++S ++K ++ LPH LFYGPPGTGK
Sbjct: 1 MSSNSKTPLQKRNLPWVEKYRPQKLDDLISHRDILSTIQKFINEDKLPHLLFYGPPGTGK 60
Query: 80 TSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPF 138
TST++A QL+ D + +LELNASDDRGI V+R + +FA T + F + F
Sbjct: 61 TSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------F 113
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
K+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+
Sbjct: 114 KLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSP 173
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258
+ M+ RL+++ +QES+ ++ +V S GDMRR++ LQS + E + E
Sbjct: 174 DQMIPRLEHVIQQESIDITPDGMKAIVTLSSGDMRRSLNILQSTS--MAYEKVTEETAYN 231
Query: 259 VTGV-----IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 313
TG I N ++ L D ++ +E L+ + + + H ++ D
Sbjct: 232 CTGHPLRSDIAN-ILDWALNKDFTTAYKQILELKTLKGLALQDILTEVHLLIHRVDFPPD 290
Query: 314 KQKALILEKLAECNARLQDGASEYIQI 340
+ L++ KLA+ RL G E IQ+
Sbjct: 291 IRIGLLI-KLADVEHRLASGTDEKIQL 316
>gi|58262374|ref|XP_568597.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230771|gb|AAW47080.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 373
Score = 232 bits (592), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 126/315 (40%), Positives = 185/315 (58%), Gaps = 14/315 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV+ +++ S ++K + LPH L YGPPGTGKTST++A +L+G
Sbjct: 54 LPWVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARRLYG 113
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR+ ILELNASDDRGI V+R+++K FA T F++ FK+VILDEAD MT A
Sbjct: 114 PAYRKHILELNASDDRGIDVVREQIKNFA-MTKVLFSKG------FKLVILDEADMMTQA 166
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ TK+ RFC++CNYV+ I + SRC++FRF PL E + ++ + ++E
Sbjct: 167 AQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKE 226
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKL 271
V + +++ S GDMRRA+ LQ+C IV+E + P+P IE++
Sbjct: 227 GVNLTDDGRDAILKLSRGDMRRALNVLQAC---HAAYDIVDETAVYNCTGNPHPRDIERV 283
Query: 272 LK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
++ D F I L +E A Q + L + + +L+ L
Sbjct: 284 VQSMMADEFGTAYSLITSLKIEKGLALQDLIAGAYEFLDTVELPKQSRIYLLDHLGSTEH 343
Query: 329 RLQDGASEYIQILDL 343
RL G SE +Q+ L
Sbjct: 344 RLSLGGSEKMQLTAL 358
>gi|47221499|emb|CAG08161.1| unnamed protein product [Tetraodon nigroviridis]
Length = 335
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 196/327 (59%), Gaps = 19/327 (5%)
Query: 21 SVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
S +T + + +PWVEKYRP+ +DD+I ++++S +++ +S LPH LFYGPPGTGKT
Sbjct: 2 SATTKAPLQTRNLPWVEKYRPQKLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKT 61
Query: 81 STMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFK 139
ST++A QL+ D + +LELNASDDRGI V+R + +FA T + F + FK
Sbjct: 62 STILACARQLYRDKEFNSMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------FK 114
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+ +
Sbjct: 115 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPD 174
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLE 258
M+ RL+++ +QES+ ++ +V S GDMRR++ LQS + G V ED V
Sbjct: 175 QMVPRLEHVIQQESIDVTPDGMKAIVTLSSGDMRRSLNILQSTSM---AYGKVTEDTVYT 231
Query: 259 VTGV-----IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD 313
TG I N ++ L D + +E L+ + + + H ++ +
Sbjct: 232 CTGHPLRSDIAN-ILDWALNKDFTTAYRQILELKTLKGLALHDILTEVHLLIHRVDFPPN 290
Query: 314 KQKALILEKLAECNARLQDGASEYIQI 340
+ L++ KLA+ RL G E IQ+
Sbjct: 291 IRIGLLI-KLADVEHRLASGTDEKIQL 316
>gi|321458433|gb|EFX69502.1| hypothetical protein DAPPUDRAFT_202808 [Daphnia pulex]
Length = 330
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 136/332 (40%), Positives = 195/332 (58%), Gaps = 32/332 (9%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T + +PWVEKYRPK +DD+I Q+++S ++K ++ LPH LFYGPPGTGKTST++A
Sbjct: 2 TSSGNLPWVEKYRPKQLDDLISHQDIISTIRKFINENRLPHLLFYGPPGTGKTSTILACA 61
Query: 88 HQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
+L+ + +LELNASDDRGI V+R+++ +FA T S F FK++ILDEA
Sbjct: 62 KELYTPQQFNSMVLELNASDDRGINVVRNQIMSFAS-TRSIFKSG------FKLIILDEA 114
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT+ AQ ALRR +EK T++ RFCLICNY+S II + SRC++FRF PL + +L R+
Sbjct: 115 DAMTNDAQNALRRVIEKFTENVRFCLICNYMSKIIPAIQSRCTRFRFGPLKSDQILPRMN 174
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
Y+ E+E + + L+ + GDMRR I LQS + + E VNED V + +P
Sbjct: 175 YVIEEEKIKVTEDGRQALLSLAHGDMRRVINILQSTS-MAFDE--VNED--HVYTCVGHP 229
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQF-----HDIVMSASSLSDK------Q 315
LK D V+ + + + AYS + F DI+ K
Sbjct: 230 -----LKSDIANVVSWMLNEDLTSAYSKIRDLQTFKGLALQDILTETHLYVHKIEFPPNV 284
Query: 316 KALILEKLAECNARLQDGASEYIQILDLGSIV 347
+ +LEK+A+ RL G SE +Q LGS++
Sbjct: 285 RVFLLEKMADVEYRLSAGCSEKLQ---LGSLL 313
>gi|156384148|ref|XP_001633193.1| predicted protein [Nematostella vectensis]
gi|156220260|gb|EDO41130.1| predicted protein [Nematostella vectensis]
Length = 329
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 130/323 (40%), Positives = 192/323 (59%), Gaps = 20/323 (6%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+ +PWVEKYRPK +DD+I ++++ +++ ++ LPH LFYGPPGTGKTST++A QL
Sbjct: 9 RNLPWVEKYRPKCLDDLISHTDIINTIQRFINEERLPHLLFYGPPGTGKTSTILAVAKQL 68
Query: 91 FGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
+ D + +LELNASDDRGI ++R + +FA T + F FK+VILDEAD+M
Sbjct: 69 YPDKQFGSMVLELNASDDRGIGIVRGDILSFAS-TRTIFKSG------FKLVILDEADAM 121
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ ALRR MEK T++TRFCLICNY++ II L SRC++FRF PL+ + ML RL+++
Sbjct: 122 TQDAQNALRRVMEKFTENTRFCLICNYLTKIIPALQSRCTRFRFGPLSVDQMLPRLEHVI 181
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP--- 266
E E V ++L+ + GDMR+ + LQS + +VNED + + P P
Sbjct: 182 ESERVNVTDDGRKSLLRLAQGDMRKVLNILQSTSM---AYSVVNEDHVYLCTGQPQPTDI 238
Query: 267 --WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
++ +L D ++ L+ + + ++ H V K + +L+K+A
Sbjct: 239 GNIVDWMLNKDFTTAYTNILKLKTLKGLALQDILEETHSYVHRV-DFPAKIRIHLLDKMA 297
Query: 325 ECNARLQDGASEYIQILDLGSIV 347
E RL G SE IQ LGS++
Sbjct: 298 EVEYRLASGTSEKIQ---LGSMI 317
>gi|147902441|ref|NP_001085526.1| MGC80325 protein [Xenopus laevis]
gi|49117945|gb|AAH72889.1| MGC80325 protein [Xenopus laevis]
Length = 335
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 193/322 (59%), Gaps = 19/322 (5%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
SG++RN +PWVEKYRP+T+D++I Q+++S +++ +S LPH LFYGPPGTGKTST++
Sbjct: 9 SGQSRN--LPWVEKYRPQTLDELISHQDILSTIQRFISEDKLPHLLFYGPPGTGKTSTIL 66
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R V +FA T + F + FK+VIL
Sbjct: 67 ACAKQLYKDREFNSMVLELNASDDRGIDIVRGPVLSFAS-TRTIFKKG------FKLVIL 119
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+ M+
Sbjct: 120 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSSEMMIP 179
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV- 262
RL+++ ++E V ++ LV S GDMRR++ LQS + + V TG
Sbjct: 180 RLEHVVKEEHVDISPDGMKALVTLSNGDMRRSLNILQSTN--MAYSKVTEDTVYTCTGHP 237
Query: 263 ----IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
I N ++ +L D + +E L+ + + + H + + +
Sbjct: 238 LRSDIAN-ILDWMLNKDFTSAYKNIMELKTLKGLALHDILTEIH-LYVHRVDFPALVRIH 295
Query: 319 ILEKLAECNARLQDGASEYIQI 340
+L K+A+ RL G SE IQ+
Sbjct: 296 LLVKMADIEYRLASGTSEKIQL 317
>gi|307595017|ref|YP_003901334.1| replication factor C [Vulcanisaeta distributa DSM 14429]
gi|307550218|gb|ADN50283.1| Replication factor C [Vulcanisaeta distributa DSM 14429]
Length = 327
Score = 232 bits (591), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/225 (50%), Positives = 153/225 (68%), Gaps = 10/225 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
V WVEKYRP IDD+I+Q V + +K+ L+ ++PH LF+GPPGTGKT+ +A +L+G
Sbjct: 6 VLWVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYG 65
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D +RE +LELNASD+RGI +IR+KVK FA+ + PF+++ILDEAD+MT
Sbjct: 66 DAWRENVLELNASDERGIAMIREKVKEFAKTMPT-------VKAPFRLIILDEADNMTPD 118
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR ME T S RF L+ NY S II+P+ SRCS FRF PL ++ +L RL+ I +E
Sbjct: 119 AQQALRRIMEMYTTSVRFILLANYPSGIIEPIQSRCSLFRFSPLPKDAVLGRLREIASKE 178
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
V ALE + + S GDMR+AI LQ+ A L G+V+E+V+
Sbjct: 179 GVKVTDDALEAIWDVSQGDMRKAINTLQAAASLG---GVVDEEVV 220
>gi|50543016|ref|XP_499674.1| YALI0A02068p [Yarrowia lipolytica]
gi|49645539|emb|CAG83597.1| YALI0A02068p [Yarrowia lipolytica CLIB122]
Length = 358
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 181/323 (56%), Gaps = 25/323 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV + VV+ LKK L+ PH LFYGPPGTGKTST++A +++G
Sbjct: 29 LPWVEKYRPDTLDDVTGHEGVVTTLKKLLANKKFPHLLFYGPPGTGKTSTILAVAREIYG 88
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP--PFKIVILDEADSMT 150
Y+ +LELNASDDRGI V+RD++K FA + F + G+ FK+VILDEAD+MT
Sbjct: 89 PSYKSMVLELNASDDRGIDVVRDQIKVFA-SSRQIFQRGGEENARSNFKLVILDEADAMT 147
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
+ AQ ALRR +E+ T TRFC++ NY + L SRC++FRF PL E + R+ + +
Sbjct: 148 NVAQNALRRVIEQYTTHTRFCILANYTHKLNPALLSRCTRFRFSPLPEAAIDKRIMQVID 207
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCA---RLKGGEGIVNEDVLEVTGVIPNPW 267
E V A L+E S GDMRRA+ LQ+C G + I V G P+P
Sbjct: 208 AEKVKIAPDAKAALLELSKGDMRRALNVLQACHTGLEHPGKDTITLSQVYLCVGS-PDP- 265
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQ-----FHDIV------MSASSLSDKQK 316
D +L + D AY + DI+ + A +L +K K
Sbjct: 266 ------ADIDTILTSILNDDWTTAYDTVSTLKRERGLALVDILEKLSAELMALNLKEKTK 319
Query: 317 ALILEKLAECNARLQDGASEYIQ 339
+L KLA+ RL +G SE IQ
Sbjct: 320 IALLSKLADIEYRLANGGSEKIQ 342
>gi|330801691|ref|XP_003288858.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
gi|325081104|gb|EGC34633.1| hypothetical protein DICPUDRAFT_153140 [Dictyostelium purpureum]
Length = 348
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 191/320 (59%), Gaps = 20/320 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK+I+D+I ++++ LPH LFYGPPGTGKTST+ A +L+G
Sbjct: 27 LPWVEKYRPKSINDLIAHDDIIAT-----KSNTLPHLLFYGPPGTGKTSTIQAIARKLYG 81
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ Y +LELNASDDRGI V+R+++KTFA + FN P+K++ILDEADSMT+
Sbjct: 82 ENYSRMVLELNASDDRGIDVVREQIKTFAS-SMFFFNS----TVPYKLIILDEADSMTNI 136
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++CNYV II L SRC++FRFKPL ++ RL+ I + E
Sbjct: 137 AQTALRRVIEKYTKTTRFCIVCNYVVKIIPALQSRCTRFRFKPLPDSATEERLKEILKIE 196
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP----WI 268
+V D + ++ ++ GDMR+++ LQS + G I E + + TG P+P +
Sbjct: 197 NVQIDEEGMKAVLFLGDGDMRKSLNILQSVSMSTNGL-IGEEQIYKCTGN-PSPTDFHMV 254
Query: 269 EKLLKVDSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
+ L + FQ I DL + S T + F +M + L L++
Sbjct: 255 LEWLFNEDFQTAFNNITDLKKKKGLSLTDIISYFPHFLMEMDDMPSILLCKALSHLSDIE 314
Query: 328 ARLQDGASEYIQILDLGSIV 347
L +GASE +Q LGS+V
Sbjct: 315 FNLSNGASEKLQ---LGSLV 331
>gi|302843932|ref|XP_002953507.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
gi|300261266|gb|EFJ45480.1| DNA replication factor C complex subunit 5 [Volvox carteri f.
nagariensis]
Length = 356
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 131/344 (38%), Positives = 192/344 (55%), Gaps = 19/344 (5%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APSS + T G + PWVEKYRPK++D+V ++++ +K+ + LPH L YG
Sbjct: 20 APSSR---LRTDGTVDGRNAPWVEKYRPKSLDEVAAHKQIIDTIKRLTNENRLPHLLLYG 76
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PPGTGKTST++A Q++G LELNASD+RGI V+R +++ FA N+
Sbjct: 77 PPGTGKTSTILAVARQIYGSSMANMTLELNASDERGISVVRQEIQDFASTRTIFSNK--- 133
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
FK++ILDE D+MT+ AQ ALRR +EK T++ RFCLICNYVS +I L SRC+KFRF
Sbjct: 134 ----FKLIILDECDAMTNDAQFALRRVIEKYTRNARFCLICNYVSKVIPALQSRCTKFRF 189
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
PL + RLQY+ E V AL+ +VE GDMRR++ LQSC +V+
Sbjct: 190 APLDPQFVHERLQYVASTERVNLGSGALDAVVELGNGDMRRSLNILQSC---HLAFDVVD 246
Query: 254 EDVLEVTGVIPNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA 308
+ + + P P + LL V EK + + + + + H +M
Sbjct: 247 QQAVYLCTGNPLPADISQVLTWLLNEPVADVFEKVTQLQVDRGVALVDVVRELHPWIMK- 305
Query: 309 SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+S+ K ++E++A+ RL SE +Q+ L + +KA +
Sbjct: 306 TSMPVHAKIALVERMADVEHRLAYSTSEKLQLGGLIAAFVKARE 349
>gi|348533450|ref|XP_003454218.1| PREDICTED: replication factor C subunit 5-like [Oreochromis
niloticus]
Length = 335
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 199/329 (60%), Gaps = 37/329 (11%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
+TRN +PWVEKYRP+T+DD+I ++++S +++ +S LPH LFYGPPGTGKTST++A
Sbjct: 10 QTRN--LPWVEKYRPQTLDDLISHKDILSTIQRFISEDKLPHLLFYGPPGTGKTSTILAC 67
Query: 87 CHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
QL+ + + +LELNASDDRGI V+R + +FA T + F + FK+VILDE
Sbjct: 68 ARQLYKEKEFNSMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG------FKLVILDE 120
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL+ + M+ RL
Sbjct: 121 ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRL 180
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIP 264
+++ +QE++ ++ +V S GDMRR++ LQS + G V ED V TG
Sbjct: 181 EHVIQQENIDITPDGMKGIVTLSTGDMRRSLNILQSTSM---AYGKVTEDTVYTCTG--- 234
Query: 265 NPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFD-------QFHDIVMSASSLSDKQ-- 315
+P L+ D +L+ + AY+ Q+ + HDI+ L +
Sbjct: 235 HP-----LRSDIANILDWCLNKDFTSAYN--QILELKTLKGLALHDILTEVHLLVHRVDF 287
Query: 316 ----KALILEKLAECNARLQDGASEYIQI 340
+ +L KLA+ RL G SE IQ+
Sbjct: 288 PPAIRISLLIKLADVEHRLASGTSEKIQL 316
>gi|443714846|gb|ELU07083.1| hypothetical protein CAPTEDRAFT_164264 [Capitella teleta]
Length = 333
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 132/326 (40%), Positives = 193/326 (59%), Gaps = 25/326 (7%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
++RN +PWVEKYRP+ +DD+I ++++S + + + LPH LFYGPPGTGKT+T++A
Sbjct: 8 ESRN--LPWVEKYRPQKLDDLISHKDIISTIGRFVKEERLPHLLFYGPPGTGKTTTILAV 65
Query: 87 CHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
Q++ + +LELNASDDRGI ++RD++ +FA T + F FK+VILDE
Sbjct: 66 AKQIYAPKEFNSMVLELNASDDRGIGIVRDRILSFAS-TRTLFKSG------FKLVILDE 118
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT+ AQ ALRR +EK T++TRFC+ICNY+S II L SRC++FRF PL M RL
Sbjct: 119 ADAMTNDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLLPEQMKPRL 178
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPN 265
QY+ EQE + ++ LV + GDMRR++ LQSC+ + + V G
Sbjct: 179 QYVIEQEKLTVSEDGMDALVTLANGDMRRSLNILQSCS--MAFDEVTEHTVYTCVGHPLR 236
Query: 266 PWIEKLLKVDSFQVLEKYIEDL--ILEAYSATQLFDQFHDIVMSASSLSDK------QKA 317
IE ++K + + E + E ILE +A L +D++ + +
Sbjct: 237 SDIEHIVK---WMLNESFTEAYKNILEMQTAKGL--ALNDVLTEVHHYVHRIDFPMNVRI 291
Query: 318 LILEKLAECNARLQDGASEYIQILDL 343
+LEK+A+ RL G SE IQ+ L
Sbjct: 292 HLLEKMADVEHRLASGTSESIQLSSL 317
>gi|301114403|ref|XP_002998971.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
gi|262111065|gb|EEY69117.1| replication factor C subunit 5 [Phytophthora infestans T30-4]
Length = 353
Score = 231 bits (590), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 139/349 (39%), Positives = 202/349 (57%), Gaps = 31/349 (8%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPV---PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD 65
K +DAPS S +RN+ PWVEKYRP ++DD+I QE++S L + +
Sbjct: 7 KSAEDAPSFEGIS------SRNRSTESWPWVEKYRPSSLDDLIAHQEIISTLNRLIDAQK 60
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA 125
LPH LFYGPPGTGKTS +IAA +L+G Y +LELNASDDRGI V+R+++K FA T
Sbjct: 61 LPHLLFYGPPGTGKTSMIIAAARRLYGKNYGSMVLELNASDDRGIDVVRNQIKEFA-GTK 119
Query: 126 SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
F+Q K++ILDEADSMT+ AQ +LRR +EK TK+ RFCLICNYVS II L
Sbjct: 120 KLFSQG------VKLIILDEADSMTNDAQFSLRRVIEKYTKNARFCLICNYVSKIIPALQ 173
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
SRC++FRF PL E+ + R+++I + E + + ++ GDMRR + LQ+ +
Sbjct: 174 SRCTRFRFAPLNESQVSGRVKHIAQLEKLNMTEDGFKAILRLGQGDMRRILNILQATSM- 232
Query: 246 KGGEGIVNE-DVLEVTGVIPNPW------IEKLLKVDSF-QVLEKYIEDLILEAYSATQL 297
IV+E +V TG NP + + L +SF + K E L+ Y+ + +
Sbjct: 233 --AHDIVDEANVYLCTG---NPLPKDIESVTQWLFNESFTAAVRKCAEMQKLKGYATSDI 287
Query: 298 FDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSI 346
+ + L + + + ++LA+ RL +G +E +Q+ L +I
Sbjct: 288 LQDVYRYT-TELELPPRCRMYLYDELAKLEHRLSNGTTEELQLASLVAI 335
>gi|395834095|ref|XP_003790050.1| PREDICTED: replication factor C subunit 5 [Otolemur garnettii]
Length = 456
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 137/336 (40%), Positives = 192/336 (57%), Gaps = 19/336 (5%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
AP + K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH LFYG
Sbjct: 119 APKQQQEQQPAGTKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFYG 176
Query: 74 PPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PPGTGKTST++A +L+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 177 PPGTGKTSTILACAKRLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG- 234
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FR
Sbjct: 235 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFR 289
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F PL M+ RL+++ E+E V ++ LV S GDMRRA+ LQS G +
Sbjct: 290 FGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVT 347
Query: 253 NEDVLEVTGV-----IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS 307
E V TG I N ++ +L D +E L+ + + + H V
Sbjct: 348 EETVYTCTGHPLKSDIANI-LDWMLNHDFTTAYRNIMELKTLKGLALHDILTEIHLFVHR 406
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G +E IQ+ L
Sbjct: 407 V-DFPSSVRIYLLTKMADIEYRLSVGTNEKIQLSSL 441
>gi|74211816|dbj|BAE29258.1| unnamed protein product [Mus musculus]
Length = 339
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 138/342 (40%), Positives = 193/342 (56%), Gaps = 34/342 (9%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APS + + + R + +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YG
Sbjct: 5 APSQQRPAAA-----RARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYG 59
Query: 74 PPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PPGTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 60 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG- 117
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FR
Sbjct: 118 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFR 172
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F PL M+ RL+++ ++E+V ++ LV S GDMRRA+ LQS G +
Sbjct: 173 FGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVT 230
Query: 253 NEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQ-----FHDIVMS 307
E V TG +P LK D +L+ + AY + HDI+
Sbjct: 231 EETVYTCTG---HP-----LKTDIANILDWMLNQDFTTAYKSIMELKTLKGLALHDILTE 282
Query: 308 AS------SLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G SE IQ+ L
Sbjct: 283 VHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQLSSL 324
>gi|321265444|ref|XP_003197438.1| DNA replication factor [Cryptococcus gattii WM276]
gi|317463918|gb|ADV25651.1| DNA replication factor, putative [Cryptococcus gattii WM276]
Length = 373
Score = 231 bits (589), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 127/321 (39%), Positives = 187/321 (58%), Gaps = 26/321 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV+ +++ ++K + LPH LFYGPPGTGKTST++A +L+G
Sbjct: 54 LPWVEKYRPVSLDDVVSHKDITGTIEKFIEAGRLPHLLFYGPPGTGKTSTVLALARRLYG 113
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y++ ILELNASDDRGI V+R+++K FA T F++ FK+VILDEAD MT A
Sbjct: 114 SAYKKHILELNASDDRGIDVVREQIKNFA-MTKVLFSKG------FKLVILDEADMMTQA 166
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ TK+ RFC++CNYV+ I + SRC++FRF PL E + ++ + ++E
Sbjct: 167 AQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVVQKE 226
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKL 271
V + L++ S GDMRRA+ LQ+C V+E + P+P IE++
Sbjct: 227 GVNLTEDGRDALLKLSRGDMRRALNVLQAC---HAAYDTVDETAVYNCTGNPHPRDIERV 283
Query: 272 LK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD------KQKALILEK 322
++ D F I L +E A Q D++ A D + + +L+
Sbjct: 284 VQSMMADEFGTAYSLITSLKIEKGLALQ------DLIAGAYEFLDTVELPKQSRIYLLDH 337
Query: 323 LAECNARLQDGASEYIQILDL 343
L RL G SE +Q+ L
Sbjct: 338 LGSTEHRLSLGGSEKMQLTAL 358
>gi|440912210|gb|ELR61801.1| Replication factor C subunit 5 [Bos grunniens mutus]
Length = 340
Score = 231 bits (588), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 139/335 (41%), Positives = 191/335 (57%), Gaps = 20/335 (5%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+ K + K RN +PWVEKYRP+T+DD+I Q+++S ++K +S LPH L YGPP
Sbjct: 4 SARKQQQPDAAKIRN--LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPP 61
Query: 76 GTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
GTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 62 GTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG--- 117
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF
Sbjct: 118 ---FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 174
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL M+ RL+++ E+E V ++ L+ S GDMRRA+ LQS G + E
Sbjct: 175 PLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEE 232
Query: 255 DVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV------MSA 308
V TG I +L Q + I+E + L HDI+ +
Sbjct: 233 TVYTCTGHPLKSDIANILDWMLNQDFTTAYRNNIMELKTLKGL--ALHDILTEIHLFVHR 290
Query: 309 SSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G SE IQ+ L
Sbjct: 291 VDFPSSVRIHLLTKMADIEYRLAVGTSEKIQLSSL 325
>gi|395514036|ref|XP_003761227.1| PREDICTED: replication factor C subunit 5 [Sarcophilus harrisii]
Length = 343
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 189/328 (57%), Gaps = 29/328 (8%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+++ +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 18 TKSRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACA 77
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 78 KQLYKDKEFNSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 130
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 131 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 190
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
++ E+E V ++ L+ S GDMRRA+ LQS G + E V TG +P
Sbjct: 191 HVIEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP 245
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQ-----FHDIVMSASSLSDK------Q 315
LK D +L+ + AY HDI+ +
Sbjct: 246 -----LKTDIANILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPPAV 300
Query: 316 KALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G SE IQ+ L
Sbjct: 301 RIHLLIKMADIEHRLAVGTSEKIQLSSL 328
>gi|374327674|ref|YP_005085874.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356642943|gb|AET33622.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 329
Score = 231 bits (588), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 130/311 (41%), Positives = 179/311 (57%), Gaps = 16/311 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L+ + D+PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ +N M RL+ I + E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAIFRFSPMPKNLMAERLRLIAKSEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV--NEDVLEVTGVIPNPWIEKL- 271
A++ + E S GDMR+AI LQ A +V N + P+ IE
Sbjct: 179 ELRDDAIDIIYELSEGDMRKAINLLQVVA---ATNKVVDSNAVAAAAATIKPSDIIELFN 235
Query: 272 --LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ D + EK E + L+ + F ++ +L D KA I E LA+ + R
Sbjct: 236 LAIGGDVSKAREKLRELMYLKGVAGVDFIRAFQRELIRM-ALDDDVKAEIAELLADIDYR 294
Query: 330 LQDGASEYIQI 340
L GA E IQ+
Sbjct: 295 LTQGADEEIQL 305
>gi|320163538|gb|EFW40437.1| replication factor C 5 [Capsaspora owczarzaki ATCC 30864]
Length = 348
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 136/347 (39%), Positives = 200/347 (57%), Gaps = 24/347 (6%)
Query: 13 DAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
+ P+ ++ S + NK +PWVEKYRP ++D++I ++++S + + ++ +PH LFY
Sbjct: 9 ETPAVAEPSRVRGAASTNKNLPWVEKYRPSSLDELISHKDIISTIDRFITEDRVPHLLFY 68
Query: 73 GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN 129
GPPGTGKTST++A +++G+ + +LELNASDDRGI V+R+++K FA T+SG
Sbjct: 69 GPPGTGKTSTILACAKKMYGNRMQSMVLELNASDDRGIGVVREQIKEFASTRTITSSGGT 128
Query: 130 QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
K+VILDEAD+MT AQAALRR +EK T++TRFCLICNYVS I + SRC+
Sbjct: 129 ---------KLVILDEADAMTSDAQAALRRVIEKYTRNTRFCLICNYVSKITPAIQSRCT 179
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
+FRF PL+ ML RL ++ E E V L+ + GDMR+ + LQS A +
Sbjct: 180 RFRFAPLSSEQMLDRLNFVIESERVNVTDDGKAALMRLAQGDMRKVLNILQSTA--MAFD 237
Query: 250 GIVNEDVLEVTGVIPNP----WIEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDI 304
+ V TG P P I + L + F I +L L+ A Q + + H+
Sbjct: 238 TVDETSVYTCTG-FPLPADIETIVQWLLNEPFTSAMANIGELKLQKGLALQDILREVHEF 296
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
M+ + +L++LA+ RL G +E IQ LGS+V N
Sbjct: 297 -MARIEFPANVRIYLLKQLADIEYRLSAGTNERIQ---LGSLVAVFN 339
>gi|348584884|ref|XP_003478202.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Cavia
porcellus]
Length = 337
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 190/328 (57%), Gaps = 28/328 (8%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 14 AAKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 71
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VIL
Sbjct: 72 ACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVIL 124
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 125 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 184
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
RL+++ ++E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 185 RLEHVVKEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG-- 240
Query: 264 PNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFD--QFHDIV------MSASSLSDKQ 315
+P LK D +L+ + AY + HDI+ +
Sbjct: 241 -HP-----LKSDIANILDWMLNQDFTTAYRKLKTLKGLALHDILTEIHLFVHRVDFPSSV 294
Query: 316 KALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G SE IQ+ L
Sbjct: 295 RIHLLTKMADIEYRLSVGTSEKIQLSSL 322
>gi|194042984|ref|XP_001926304.1| PREDICTED: replication factor C subunit 5 [Sus scrofa]
Length = 340
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 135/322 (41%), Positives = 189/322 (58%), Gaps = 17/322 (5%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T+DD+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV---- 262
++ E+E V ++ L+ S GDMRRA+ LQS G + E V TG
Sbjct: 188 HVVEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTGHPLKS 245
Query: 263 -IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
I N ++ +L D +E L+ + + + H V S + L L
Sbjct: 246 DIAN-ILDWMLNQDFTTAYRNIMELKTLKGLALNDILTEIHLFVHRVDFPSSVRIHL-LT 303
Query: 322 KLAECNARLQDGASEYIQILDL 343
K+A+ RL G +E IQ+ L
Sbjct: 304 KMADIEYRLSVGTNEKIQLSSL 325
>gi|391342410|ref|XP_003745513.1| PREDICTED: replication factor C subunit 5-like [Metaseiulus
occidentalis]
Length = 327
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 128/326 (39%), Positives = 193/326 (59%), Gaps = 14/326 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF- 91
+PWVEKYRPKT+DD+I ++++S + + ++ PH LFYGPPGTGKTST++A QL+
Sbjct: 8 LPWVEKYRPKTLDDLIAHEDIISTIDRFVTQDRFPHLLFYGPPGTGKTSTILATARQLYE 67
Query: 92 GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI ++R ++ FA T + FN+ FK++ILDEAD+MTH
Sbjct: 68 PKEFSSMVLELNASDDRGIGIVRGEILNFAS-TRTIFNKK------FKLIILDEADAMTH 120
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK + RFC+ICNY+S II PL SRC++FRF PL+ + M+ R++ + +
Sbjct: 121 DAQNALRRVIEKYADNARFCIICNYLSKIIPPLQSRCTRFRFGPLSVSQMVPRIEMVIKT 180
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQS-----CARLKGGEGIVNEDVLEVTGVIPNP 266
E V + +V+ + GDMR+++ LQ+ C R K E V + V +
Sbjct: 181 EDVPITPAGKQAIVDLAEGDMRKSLNILQASYMAFCERGKIDETEVYQCVGAPQKSVIAD 240
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
+ L+ D K ++ +++ + + + H +M L K K IL KL +
Sbjct: 241 IMTHLMNDDITTAYRKILDIKTMKSLALQDIVHKVHQSIMEF-DLKAKVKIFILSKLGQL 299
Query: 327 NARLQDGASEYIQILDLGSIVIKANK 352
RL G+SE IQ+ L SI+ +A +
Sbjct: 300 EKRLAAGSSENIQLGSLVSIMFQARQ 325
>gi|110590957|pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
gi|110590958|pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
gi|110590959|pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
gi|110590960|pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 230 bits (587), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 114/227 (50%), Positives = 150/227 (66%), Gaps = 9/227 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+T+D+V+ Q EV+ LK + ++PH LF GPPGTGKT+T IA LFG+
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ +E+NASD+RGI V+R K+K FA+ G PFKI+ LDEAD++T AQ
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG-------GAPFKIIFLDEADALTADAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +KS RF L CNYVS II+P+ SRC+ FRFKP+ + M RL ICE+E V
Sbjct: 120 AALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
LE L+ SGGD R+AI LQ A + GE + + + ++T
Sbjct: 180 KITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITA 224
>gi|327276150|ref|XP_003222833.1| PREDICTED: replication factor C subunit 5-like [Anolis
carolinensis]
Length = 342
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 138/341 (40%), Positives = 195/341 (57%), Gaps = 26/341 (7%)
Query: 13 DAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
+ PS +V ++ +PWVEKYRP+T++D+I Q+++S ++K +S LPH LFY
Sbjct: 8 EGPSERTVAVKSAN------LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLFY 61
Query: 73 GPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
GPPGTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 62 GPPGTGKTSTILACAKQLYKDKEFNSMVLELNASDDRGIGIVRGPILSFAS-TRTIFKKG 120
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++F
Sbjct: 121 ------FKLVILDEADAMTQEAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRF 174
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
RF PL M+ RL+++ E E V ++ LV S GDMRR++ LQS G +
Sbjct: 175 RFGPLTPELMVPRLKHVIESEKVDVSDDGMKALVTLSNGDMRRSLNILQSTNMAFG--KV 232
Query: 252 VNEDVLEVTGV-----IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
E V TG I N ++ +L D +E L+ + + + H V
Sbjct: 233 TEETVYTCTGQPLKSDIAN-ILDWMLNQDFTAAYHNIMELKTLKGLALHDILTEIHLFVH 291
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
+ +L K+A+ RL G SE IQ LG++V
Sbjct: 292 RV-DFPPSVRIQLLIKMADIEHRLAAGTSEKIQ---LGALV 328
>gi|325969252|ref|YP_004245444.1| ATPase AAA [Vulcanisaeta moutnovskia 768-28]
gi|323708455|gb|ADY01942.1| AAA ATPase central domain protein [Vulcanisaeta moutnovskia 768-28]
Length = 327
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 111/223 (49%), Positives = 152/223 (68%), Gaps = 10/223 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP IDD+I+Q V + +K+ L+ ++PH LF+GPPGTGKT+ +A +L+GD
Sbjct: 8 WVEKYRPSRIDDIIDQDHVKARVKEMLANGNIPHLLFFGPPGTGKTTMALAIARELYGDA 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE +LELNASD+RGI +IR+KVK FA+ + PF+++ILDEAD+MT AQ
Sbjct: 68 WRENVLELNASDERGIAMIREKVKEFAKTIPT-------VKAPFRLIILDEADNMTPDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T S RF L+ NY S II+P+ SRCS FRF PL ++ +L RL+ I +E V
Sbjct: 121 QALRRIMEMYTSSVRFILLANYSSGIIEPIQSRCSLFRFSPLPKDAVLGRLRDIASREGV 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+ALE + + S GDMR+AI LQ+ A L G+V+E+ +
Sbjct: 181 KVTDEALEAIWDISQGDMRKAINTLQAAASLG---GVVDEEAV 220
>gi|332164786|ref|NP_001193730.1| replication factor C subunit 5 isoform 4 [Homo sapiens]
gi|208967278|dbj|BAG73653.1| replication factor C [synthetic construct]
Length = 337
Score = 230 bits (587), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 189/325 (58%), Gaps = 26/325 (8%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI +IR + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG +P
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP 242
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFD--QFHDIV------MSASSLSDKQKAL 318
LK D +L+ + AY + HDI+ + +
Sbjct: 243 -----LKSDIANILDWMLNQDFTTAYRKLKTLKGLALHDILTEIHLFVHRVDFPSSVRIH 297
Query: 319 ILEKLAECNARLQDGASEYIQILDL 343
+L K+A+ RL G +E IQ+ L
Sbjct: 298 LLTKMADIEYRLSVGTNEKIQLSSL 322
>gi|302348723|ref|YP_003816361.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
gi|302329135|gb|ADL19330.1| Replication factor C small subunit [Acidilobus saccharovorans
345-15]
Length = 329
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 187/312 (59%), Gaps = 17/312 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+++ +++ Q+E+V L K ++ ++PH LF GPPGTGKT+ A H L+GD
Sbjct: 10 WTEKYRPRSLKEIVNQKEIVERLSKFVAEKNMPHLLFAGPPGTGKTTAAHALAHDLYGDN 69
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
Y + +LELNASD+RGI IR+KVK FA+ P PFKIV+LDEAD+MT AQ
Sbjct: 70 YTQYMLELNASDERGIDTIREKVKEFARSKTP-------PDIPFKIVLLDEADNMTADAQ 122
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + +TRF L N+ S II P+ SRC+ FRF PL ++ ++ RL+YI E+E+V
Sbjct: 123 QALRRLMELYSANTRFILAANFPSKIIDPIQSRCAFFRFTPLGKDDVVGRLRYIAEKENV 182
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIP----NPWIE 269
D ALE + + S GDMR+AI LQ+ A L G V+ D V +V G+ +E
Sbjct: 183 KYDEDALEAIYDISEGDMRKAINILQTAASL----GKVDVDSVYKVVGMARPKDIREMVE 238
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNA 328
+ LK D E + +I S + Q H + S + ++ + +I + L E +
Sbjct: 239 EALKGDFTGARELLRKVMIEYGLSGEDVVRQIHRELFSNDLKIPEELRVMIADYLGEIHY 298
Query: 329 RLQDGASEYIQI 340
R+ +G+ + IQ+
Sbjct: 299 RIVEGSDDDIQL 310
>gi|110625924|ref|NP_082404.1| replication factor C subunit 5 [Mus musculus]
gi|30913281|sp|Q9D0F6.1|RFC5_MOUSE RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|12847646|dbj|BAB27652.1| unnamed protein product [Mus musculus]
gi|57242935|gb|AAH89001.1| Replication factor C (activator 1) 5 [Mus musculus]
gi|74206797|dbj|BAE41638.1| unnamed protein product [Mus musculus]
gi|148687857|gb|EDL19804.1| mCG8761 [Mus musculus]
Length = 339
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 138/342 (40%), Positives = 192/342 (56%), Gaps = 34/342 (9%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APS + + + R + +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YG
Sbjct: 5 APSQQRPAAA-----RARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYG 59
Query: 74 PPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PPGTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 60 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG- 117
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FR
Sbjct: 118 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFR 172
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F PL M+ RL+++ ++E+V ++ LV S GDMRRA+ LQS G +
Sbjct: 173 FGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVT 230
Query: 253 NEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQ-----FHDIVMS 307
E V TG +P LK D +L+ + AY HDI+
Sbjct: 231 EETVYTCTG---HP-----LKTDIANILDWMLNQDFTTAYKNIMELKTLKGLALHDILTE 282
Query: 308 AS------SLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G SE IQ+ L
Sbjct: 283 VHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQLSSL 324
>gi|385806402|ref|YP_005842800.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
gi|383796265|gb|AFH43348.1| replication factor C small subunit [Fervidicoccus fontis Kam940]
Length = 326
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 126/312 (40%), Positives = 189/312 (60%), Gaps = 17/312 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+++D++++Q+E + LKK + + PH LF GPPGTGKT+ +A H L+G
Sbjct: 12 WAEKYRPRSLDEIVDQEETIIRLKKFVKEKNAPHMLFAGPPGTGKTTAALAFAHDLYGKN 71
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
Y++ +LELNASD+RGI VIR K+K FA+ + G PFK++ILDE+D++T AQ
Sbjct: 72 YQQFVLELNASDERGIDVIRGKIKEFARTSVVG-------GVPFKLIILDESDNLTSDAQ 124
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T ++RF LI NY S II+P+ SR + FRF PL + ++ RL++I E ESV
Sbjct: 125 QALRRMMENFTLTSRFILIANYPSKIIEPIQSRTALFRFSPLKKEDVIKRLKWILENESV 184
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLK 273
+ ALE + E S GDMR+AI LQS + + G V D V +V G+ I ++L
Sbjct: 185 SYEESALEAVFEISEGDMRKAINVLQSASAI----GKVTVDTVYKVVGLAHPKEIREMLN 240
Query: 274 V---DSFQVLEKYIEDLILE-AYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECNA 328
+ F + + L+++ S + Q H +I + LS++ K +I + E
Sbjct: 241 LALSGDFNGARERLRKLMMDYGLSGVDVIKQIHKEIFSNEIDLSEEMKLMIADYTGEILF 300
Query: 329 RLQDGASEYIQI 340
R+ +G+ + IQ+
Sbjct: 301 RITEGSDDEIQL 312
>gi|336476385|ref|YP_004615526.1| replication factor C [Methanosalsum zhilinae DSM 4017]
gi|335929766|gb|AEH60307.1| Replication factor C [Methanosalsum zhilinae DSM 4017]
Length = 317
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 190/321 (59%), Gaps = 14/321 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP +DDV+ Q+E + LK + +LPH LF GPPG GKT+T +A H+LFGD
Sbjct: 6 WIEKYRPMKLDDVVGQKEAIERLKSYVKTRNLPHLLFSGPPGVGKTATAVAIAHELFGDS 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ E ELNASD+RGI V+R K+K FA+ + G FKI+ LDEAD++T AQ
Sbjct: 66 WNENFTELNASDERGIDVVRTKIKNFAKTSPIG-------GADFKIIFLDEADALTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ T + RF L CNY S II+P+ SRC+ +RF+PLA+ + R++Y+ + E +
Sbjct: 119 SALRRTMERYTGNCRFILSCNYSSKIIEPIQSRCAVYRFRPLADEPVKERIRYVADAEGI 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
A++ + + GDMR+A+ LQ+ A E I E + ++T I+ L+ +
Sbjct: 179 KLADDAIDAIGYVAQGDMRKALNALQAAAMFD--ETIQKEMIYKITATAHPDEIKTLINI 236
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+F + ++ L+LE S + Q + M + DK+ +++ + E + R+
Sbjct: 237 ALDGNFSAAREKLDTLMLEQGLSGEDVVGQIYR-AMFGLDIPDKKLVELIDVIGEIDFRI 295
Query: 331 QDGASEYIQILDLGSIVIKAN 351
+GA+E IQ+ L + + AN
Sbjct: 296 TEGANEKIQLQALLAHFVIAN 316
>gi|392565350|gb|EIW58527.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 353
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 191/328 (58%), Gaps = 40/328 (12%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV+ ++ S + K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 34 LPWVEKYRPVTLDDVVSHHDITSTIVKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG 93
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ YR++ILELNASDDRGI V+R+++K FA +T + F + FK++ILDEAD MT A
Sbjct: 94 NDYRKQILELNASDDRGIDVVREQIKNFA-ETRTLFAKG------FKLIILDEADMMTTA 146
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + RL + E E
Sbjct: 147 AQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPITEVEKRLNSVIEAE 206
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC--ARLKGGEGIVNEDVLEVTGVIPNP---- 266
V + L++ S GDMRRA+ LQ+C A + GE ++ TG P+P
Sbjct: 207 GVKLTEDGKKALLKLSKGDMRRALNVLQACHAAYDRSGEA----EIYNCTGN-PHPSDIE 261
Query: 267 -WIEKLLKVD---SFQVLEKY-------IEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 315
+ +L+ D S+ ++ + DLI AY Q QF
Sbjct: 262 TIVNSMLQDDFTTSYNLISALKTERGLALPDLINGAYEYLQTI-QF----------KPNA 310
Query: 316 KALILEKLAECNARLQDGASEYIQILDL 343
+ +L+ LA RL G +E IQ+ L
Sbjct: 311 RIYLLDFLATTEHRLSTGGNEKIQLTAL 338
>gi|327311922|ref|YP_004338819.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326948401|gb|AEA13507.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 322
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 106/206 (51%), Positives = 144/206 (69%), Gaps = 7/206 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ ++V++ +EV + LK+ + ++PH LFYGPPGTGKT+ + +L+GD
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGDA 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME +TRF L+ NYVS II+P+ SRC+ FRF PL + +L+RL++I EQE V
Sbjct: 119 QALRRIMEMYANTTRFILLANYVSGIIEPIQSRCAIFRFSPLPKEAVLSRLRFIAEQEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQ 240
+AL+ + + + GDMRRAIT LQ
Sbjct: 179 KISQEALDAIFDFTQGDMRRAITALQ 204
>gi|432116793|gb|ELK37418.1| Replication factor C subunit 5 [Myotis davidii]
Length = 341
Score = 230 bits (586), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 136/326 (41%), Positives = 190/326 (58%), Gaps = 19/326 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
++ K RN +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YGPPGTGKTST+
Sbjct: 14 STSKIRN--LPWVEKYRPQTLSDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTI 71
Query: 84 IAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VI
Sbjct: 72 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVI 124
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 125 LDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMV 184
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL+++ E+E V ++ L+ S GDMRRA+ LQS + + E V TG
Sbjct: 185 PRLEHVIEEEKVDVSEDGMKALITLSSGDMRRALNILQSTS--MAFSKVTEETVYTCTGH 242
Query: 263 -----IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 317
I N ++ +L D +E L+ + + + H V S +
Sbjct: 243 PLKSDIAN-ILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIH 301
Query: 318 LILEKLAECNARLQDGASEYIQILDL 343
L L K+A+ RL G SE IQ+ L
Sbjct: 302 L-LTKMADIEYRLSAGTSEKIQLSSL 326
>gi|195473665|ref|XP_002089113.1| GE18941 [Drosophila yakuba]
gi|194175214|gb|EDW88825.1| GE18941 [Drosophila yakuba]
Length = 332
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 136/319 (42%), Positives = 184/319 (57%), Gaps = 28/319 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + +S LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 PQQFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CDTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL++N M+ RL+ I E
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQNQMMPRLEKIIEA 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEK 270
E+V L+ + GDMR+ + LQS VNED V G IE+
Sbjct: 184 EAVQITDDGKRALLTLAKGDMRKVLNVLQSTVM---AFDTVNEDNVYMCVGYPLRQDIEQ 240
Query: 271 LLKV--------DSFQVLE--KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
+LK DSF+ +E KY L LE + + H VM LI+
Sbjct: 241 ILKALLSGNSLEDSFKTVESAKYARGLALE-----DIITELHLFVMRLELPMSVMNKLIV 295
Query: 321 EKLAECNARLQDGASEYIQ 339
KLA+ RL G +E Q
Sbjct: 296 -KLAQIEERLAKGCTEVAQ 313
>gi|62087564|dbj|BAD92229.1| replication factor C 5 isoform 1 variant [Homo sapiens]
Length = 351
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 189/325 (58%), Gaps = 26/325 (8%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 29 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 88
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI +IR + +FA T + F + FK+VILDEA
Sbjct: 89 KQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEA 141
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 142 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 201
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG +P
Sbjct: 202 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP 256
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFD--QFHDIV------MSASSLSDKQKAL 318
LK D +L+ + AY + HDI+ + +
Sbjct: 257 -----LKSDIANILDWMLNQDFTTAYRKLKTLKGLALHDILTEIHLFVHRVDFPSSVRIH 311
Query: 319 ILEKLAECNARLQDGASEYIQILDL 343
+L K+A+ RL G +E IQ+ L
Sbjct: 312 LLTKMADIEYRLSVGTNEKIQLSSL 336
>gi|402223757|gb|EJU03821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 356
Score = 230 bits (586), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 188/319 (58%), Gaps = 15/319 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV+ +++ S ++K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 39 LPWVEKYRPATLDDVVSHKDITSTIEKFIEQNRLPHLLFYGPPGTGKTSTILAVARKIYG 98
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ YR++ILELNASDDRGI V+R+++K FA+ G FK+++LDEAD MT A
Sbjct: 99 NEYRKQILELNASDDRGIDVVREQIKNFAEMRT--LYSKG-----FKLIVLDEADMMTQA 151
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ T++ RFC+ICNYV+ II + SRC++FRF PL + + R++ + E E
Sbjct: 152 AQSALRRVIEQYTRNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPQTEIEKRIKQVVEAE 211
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKL 271
V + L++ S GDMRRA+ LQ+C +E + P+P IE +
Sbjct: 212 HVNLTEDGKQALLKLSKGDMRRALNILQAC---HAAYDRTDETAIYNCTGNPHPSDIEAI 268
Query: 272 LKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
+ D F + + + + A Q + + L + + +L+ LA
Sbjct: 269 VTSMMNDEFSTSYQKVSRMKTDKGLALQDLIAGTYEYLESLELPPQTRVYLLDHLATTEH 328
Query: 329 RLQDGASEYIQILD-LGSI 346
RL G SE +Q+ LG+I
Sbjct: 329 RLSTGGSEKVQLTALLGAI 347
>gi|428673231|gb|EKX74144.1| replication factor C subunit 2, putative [Babesia equi]
Length = 228
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 107/216 (49%), Positives = 152/216 (70%), Gaps = 4/216 (1%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRPK + DV+ Q + VS++++ + ++PH +F+GPPGTGKTS +A Q+
Sbjct: 5 KDIPWVEKYRPKKLSDVVFQTQAVSIMEQIIETFNMPHMIFHGPPGTGKTSAALAMARQI 64
Query: 91 FG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG--FNQDGKPC-PPFKIVILDEA 146
+G + RER+LELNASD+RGI V+RD++KT+ + S N + K P +K++ILDEA
Sbjct: 65 YGAEGMRERVLELNASDERGIDVVRDRIKTYTRINISNNKINPETKRVMPNYKMIILDEA 124
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D +T AQAALRR +E + +RF LICNY+ II P+ SRCS F FKP+ +N+ + RL+
Sbjct: 125 DMITSDAQAALRRVIENYSNISRFILICNYLHKIIGPIYSRCSAFHFKPIEQNSQVDRLE 184
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
YIC+QE + AL+ L + S GDMR++IT LQ C
Sbjct: 185 YICKQEGIAYTTSALQFLTKISQGDMRKSITILQVC 220
>gi|344295239|ref|XP_003419321.1| PREDICTED: replication factor C subunit 5 [Loxodonta africana]
Length = 343
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 140/336 (41%), Positives = 196/336 (58%), Gaps = 36/336 (10%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
++ K+RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST+
Sbjct: 13 SAAKSRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTI 70
Query: 84 IAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VI
Sbjct: 71 LACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVI 123
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 124 LDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMV 183
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL+++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 184 PRLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG- 240
Query: 263 IPNPWIEKLLKVDSFQVLEK--------------YIEDL-ILEAYSATQLFDQFHDIVMS 307
+P LK D +LE YI +L L+ + + + H V
Sbjct: 241 --HP-----LKSDIANILEWMLNQDFTTAYRNILYIMELKTLKGLALHDILTEIHLFVHR 293
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
S + L++ K+A+ RL G +E IQ+ L
Sbjct: 294 VDFPSSVRIHLLI-KMADIEYRLSLGTNEKIQLSSL 328
>gi|126324700|ref|XP_001375103.1| PREDICTED: replication factor C subunit 5 [Monodelphis domestica]
Length = 342
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 138/343 (40%), Positives = 194/343 (56%), Gaps = 29/343 (8%)
Query: 13 DAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
+AP + +N+ +PWVEKYRP+T+D++I Q+++S ++K +S LPH L Y
Sbjct: 2 EAPPIRQQQQQQQPAAKNRNLPWVEKYRPQTLDELISHQDILSTIQKFISEDRLPHLLLY 61
Query: 73 GPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
GPPGTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 62 GPPGTGKTSTILACARQLYKDKEFNSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG 120
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++F
Sbjct: 121 ------FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRF 174
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
RF PL M+ RL+++ +E V ++ LV S GDMRRA+ LQS G +
Sbjct: 175 RFGPLTPELMVPRLEHVIAEEKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG--KV 232
Query: 252 VNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAY-SATQLFD----QFHDIVM 306
E TG +P LK D +L+ + AY + T+L HDI+
Sbjct: 233 TEETAYTCTG---HP-----LKADIANILDWMLNQDFTSAYRNITELKTLKGLALHDILT 284
Query: 307 SASSLSDK------QKALILEKLAECNARLQDGASEYIQILDL 343
+ + +L K+A+ RL G SE IQ+ L
Sbjct: 285 EIHLFVHRVDFPPPVRIHLLIKMADIEHRLAVGTSEKIQLSSL 327
>gi|387849459|ref|NP_001248591.1| replication factor C subunit 5 [Macaca mulatta]
gi|402887809|ref|XP_003907273.1| PREDICTED: replication factor C subunit 5 [Papio anubis]
gi|355564724|gb|EHH21224.1| hypothetical protein EGK_04238 [Macaca mulatta]
gi|355759033|gb|EHH61566.1| hypothetical protein EGM_19495 [Macaca fascicularis]
gi|380786591|gb|AFE65171.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
gi|383414287|gb|AFH30357.1| replication factor C subunit 5 isoform 1 [Macaca mulatta]
Length = 340
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 193/331 (58%), Gaps = 31/331 (9%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 14 AAKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 71
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VIL
Sbjct: 72 ACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVIL 124
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 125 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 184
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
RL+++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 185 RLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG-- 240
Query: 264 PNPWIEKLLKVDSFQVLEKYIEDLILEAY-SATQLFD----QFHDIV------MSASSLS 312
+P LK D +L+ + AY + T+L HDI+ +
Sbjct: 241 -HP-----LKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFP 294
Query: 313 DKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G +E IQ+ L
Sbjct: 295 SSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 325
>gi|296213044|ref|XP_002753107.1| PREDICTED: replication factor C subunit 5 [Callithrix jacchus]
gi|403281561|ref|XP_003932252.1| PREDICTED: replication factor C subunit 5 [Saimiri boliviensis
boliviensis]
Length = 340
Score = 229 bits (585), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 193/331 (58%), Gaps = 31/331 (9%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 14 AAKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 71
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VIL
Sbjct: 72 ACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVIL 124
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 125 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 184
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
RL+++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 185 RLEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG-- 240
Query: 264 PNPWIEKLLKVDSFQVLEKYIEDLILEAY-SATQLFD----QFHDIV------MSASSLS 312
+P LK D +L+ + AY + T+L HDI+ +
Sbjct: 241 -HP-----LKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFP 294
Query: 313 DKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G +E IQ+ L
Sbjct: 295 SSVRIHLLTKMADIEYRLSVGTNEKIQLSSL 325
>gi|315230688|ref|YP_004071124.1| replication factor C small subunit [Thermococcus barophilus MP]
gi|315183716|gb|ADT83901.1| replication factor C small subunit [Thermococcus barophilus MP]
Length = 326
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 125/311 (40%), Positives = 181/311 (58%), Gaps = 14/311 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q +V LK + +PH LF GPPG GKT+ + +LFG+
Sbjct: 14 PWVEKYRPQRLDDIVGQDHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALCLTRELFGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD+RGI VIR+KVK FA+ G FKI+ LDEAD++T A
Sbjct: 74 HWRHNFLELNASDERGINVIREKVKEFARTKPIG-------GASFKIIFLDEADALTQDA 126
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME + + RF L CNY S II+P+ SRC+ FRF+PL + + R+++I E E
Sbjct: 127 QQALRRMMEMFSNNVRFILSCNYSSKIIEPIQSRCAIFRFRPLKDEDIAKRIRFIAENEG 186
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL-- 271
+ + L+ L+ + GD+RRAI LQ+ A L I +E+V V I ++
Sbjct: 187 LELTEEGLQALLYIAEGDLRRAINVLQAAAALDT--KITDENVFLVASRARPEDIREMML 244
Query: 272 --LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
L+ + + EK E L+ + S + Q H V + +S+ +K + +K+ E N R
Sbjct: 245 MALEGNFLKAREKLREILLKQGLSGEDVLIQMHKEVFNL-PISEPKKVALADKIGEYNFR 303
Query: 330 LQDGASEYIQI 340
L +GA+E IQ+
Sbjct: 304 LVEGANEMIQL 314
>gi|341896367|gb|EGT52302.1| hypothetical protein CAEBREN_14732 [Caenorhabditis brenneri]
Length = 353
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 111/215 (51%), Positives = 152/215 (70%), Gaps = 5/215 (2%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+++ + W EKYRPKT+DD+ Q EVV++LK L G DLPH LFYGPPGTGKTST +A CH
Sbjct: 30 KSRVLTWTEKYRPKTLDDIAHQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSTALAFCH 89
Query: 89 QLF-GDMYRERILELNASDDRGIQVIRDKVKTFAQQT-ASGFNQDGKPCPPFKIVILDEA 146
QLF ++ +R+L+LNASD+RGI V+R KV+ F++ + SG +D KI+ILDE
Sbjct: 90 QLFPKSIFHDRVLDLNASDERGISVVRQKVQAFSKTSLGSGGKED---VLKLKIIILDEV 146
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ+A+RR +E +K+TRF LICNYVS +I P+ SRC+KFRFK L + RL+
Sbjct: 147 DAMTREAQSAMRRVIEDYSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEVQVQRLR 206
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
IC+ E + L+ ++E + GD+RRA+ LQS
Sbjct: 207 TICDAEGAPMTDEELKQVMEYAEGDLRRAVCTLQS 241
>gi|195567431|ref|XP_002107264.1| GD15662 [Drosophila simulans]
gi|194204669|gb|EDX18245.1| GD15662 [Drosophila simulans]
Length = 208
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/208 (54%), Positives = 154/208 (74%), Gaps = 4/208 (1%)
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MTHAAQ+ALRRTMEKE++STRFCLICNYVS II P+TSRCSKFRFK L E+ ++ RL+YI
Sbjct: 1 MTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKVIDRLKYI 60
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPW 267
CE E V + A +++V+ SGGD+RRAIT LQSC RLKG E ++N D+ E++GVIP +
Sbjct: 61 CEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHVINTADLFEMSGVIPEYY 120
Query: 268 IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
+E L++ +++ LE+++ ++ AYS Q+ +QF + ++ L+D QKA I +KL
Sbjct: 121 LEDYLEICRSGNYERLEQFVREIGFSAYSVGQMMEQFVEFIVHHPGLNDPQKATICDKLG 180
Query: 325 ECNARLQDGASEYIQILDLGSIVIKANK 352
EC RLQDG SEY+QI+DLG +I A K
Sbjct: 181 ECCFRLQDGGSEYLQIMDLGCCIILALK 208
>gi|348584882|ref|XP_003478201.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Cavia
porcellus]
Length = 340
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 190/325 (58%), Gaps = 19/325 (5%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 14 AAKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 71
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VIL
Sbjct: 72 ACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVIL 124
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 125 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 184
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV- 262
RL+++ ++E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 185 RLEHVVKEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTGHP 242
Query: 263 ----IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
I N ++ +L D +E L+ + + + H V S + L
Sbjct: 243 LKSDIAN-ILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHL 301
Query: 319 ILEKLAECNARLQDGASEYIQILDL 343
L K+A+ RL G SE IQ+ L
Sbjct: 302 -LTKMADIEYRLSVGTSEKIQLSSL 325
>gi|351694763|gb|EHA97681.1| Replication factor C subunit 5 [Heterocephalus glaber]
Length = 340
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 190/325 (58%), Gaps = 19/325 (5%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 14 TAKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 71
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VIL
Sbjct: 72 ACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVIL 124
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 125 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 184
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV- 262
RL+++ ++E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 185 RLEHVIKEEKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTGHP 242
Query: 263 ----IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
I N ++ +L D +E L+ + + + H V S + L
Sbjct: 243 LKSDIAN-ILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHL 301
Query: 319 ILEKLAECNARLQDGASEYIQILDL 343
L K+A+ RL G SE IQ+ L
Sbjct: 302 -LTKMADIEYRLSVGTSEKIQLSSL 325
>gi|307108040|gb|EFN56281.1| hypothetical protein CHLNCDRAFT_145161 [Chlorella variabilis]
Length = 328
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/317 (40%), Positives = 180/317 (56%), Gaps = 24/317 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPW EKYRP+T+D + +++ ++K L LPH LFYGPPGTGKTST++A +++G
Sbjct: 8 VPWSEKYRPRTLDQISAHTDIIDTIRKLLDENQLPHLLFYGPPGTGKTSTILAIAREIYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
LELNASDDRGI V+R++++ FA N+ FK++ILDE D+MT
Sbjct: 68 SSLGNMTLELNASDDRGIAVVRNEIQDFASTRTIFSNK-------FKLIILDECDAMTKD 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR MEK T++ RFCLICNYVS II L SRC++FRF+PL + RL+YIC+QE
Sbjct: 121 AQFALRRVMEKYTRNARFCLICNYVSKIIPALQSRCTRFRFQPLPGEFVKGRLEYICQQE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP------ 266
S+ LE L+E GDMRR + LQS + GE V D T P P
Sbjct: 181 SIKVTQGGLEALIELGCGDMRRTLNLLQSTV-MSAGE--VTGDSAYATAGKPLPQDIERC 237
Query: 267 --WIEKLLKVDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKL 323
W+ ++FQ ++ DL L+ + + Q H V + + ++ K+
Sbjct: 238 AQWLLNEPLGEAFQ----HMLDLQLQKGVALVDILQQLHPFVFRI-GMPPPVRIQLVSKM 292
Query: 324 AECNARLQDGASEYIQI 340
A+ RL G S+ +Q+
Sbjct: 293 ADIEHRLAYGTSDRLQL 309
>gi|157821267|ref|NP_001100616.1| replication factor C subunit 5 [Rattus norvegicus]
gi|149063502|gb|EDM13825.1| replication factor C (activator 1) 5 (predicted) [Rattus
norvegicus]
gi|197245812|gb|AAI68902.1| Replication factor C (activator 1) 5 [Rattus norvegicus]
Length = 338
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 186/327 (56%), Gaps = 29/327 (8%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 14 RARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAK 73
Query: 89 QLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD
Sbjct: 74 QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKRG------FKLVILDEAD 126
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL++
Sbjct: 127 AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 186
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW 267
+ ++E+V ++ LV S GDMRRA+ LQS G + E V TG +P
Sbjct: 187 VVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP- 240
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQ-----FHDIVMSAS------SLSDKQK 316
LK D +L+ + AY HDI+ +
Sbjct: 241 ----LKTDIANILDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVR 296
Query: 317 ALILEKLAECNARLQDGASEYIQILDL 343
+L K+A+ RL G SE IQ+ L
Sbjct: 297 MHLLTKMADIEYRLSVGTSEKIQLSSL 323
>gi|332250708|ref|XP_003274494.1| PREDICTED: replication factor C subunit 5 isoform 1 [Nomascus
leucogenys]
gi|426374300|ref|XP_004054014.1| PREDICTED: replication factor C subunit 5 [Gorilla gorilla gorilla]
Length = 340
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 192/328 (58%), Gaps = 29/328 (8%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG +P
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP 242
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAY-SATQLFD----QFHDIV------MSASSLSDKQ 315
LK D +L+ + AY + T+L HDI+ +
Sbjct: 243 -----LKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSV 297
Query: 316 KALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G +E IQ+ L
Sbjct: 298 RIHLLTKMADIEYRLSVGTNEKIQLSSL 325
>gi|365758856|gb|EHN00681.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 202/348 (58%), Gaps = 33/348 (9%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+S +NK +PWVEKYRP+T+D+V Q EV+S ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSAGADKKNKENLPWVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGRNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + +E + +A + L+E S GDMRR + LQSC A L GE +++DV+
Sbjct: 174 IERRIANVLVREKLKLSPEAEKALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDVIY 233
Query: 259 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAY---------SATQLFDQFHDIV--MS 307
P P D VL+ +ED A+ L D IV +
Sbjct: 234 ECCGAPRP-------SDLKTVLKSMLEDDWGTAHYTLNKIRSAKGLALIDLIEGIVKILE 286
Query: 308 ASSLSDKQ-KALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
L +++ + +L +LA+ + G ++ IQ GS VI A KT+
Sbjct: 287 KYDLQNEETRVQLLTRLADIEYSISKGGNDQIQ----GSAVIGAIKTS 330
>gi|345006147|ref|YP_004809000.1| replication factor C small subunit [halophilic archaeon DL31]
gi|344321773|gb|AEN06627.1| Replication factor C small subunit [halophilic archaeon DL31]
Length = 327
Score = 229 bits (583), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 121/309 (39%), Positives = 184/309 (59%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T++D+ Q+E + L+ ++G +LPH LF GP G GKTS+ A +++GD
Sbjct: 16 WIEKYRPQTLEDIHGQEETIERLQSYIAGGELPHLLFSGPAGIGKTSSATAIAREIYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K+FA+ G + ++I+ LDEADS+T AQ
Sbjct: 76 WRGNFLELNASDERGIDVVRDRIKSFARSAFGGHD--------YRIIFLDEADSLTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + +L I E E++
Sbjct: 128 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAIANQLGEIAEIEAI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL-- 272
+ + LV + GDMRR I LQ+ A G+ + E V VT IE+++
Sbjct: 188 EVTDEGFDALVYAANGDMRRGINSLQAAATT--GDVVDAEAVYAVTATARPEDIEEMVAA 245
Query: 273 KVDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
VD F ++ L+ + + + DQ H LSD+ ++E+L E + R+
Sbjct: 246 AVDGDFPKARATLDTLLTDVGMAGGDIIDQLHRSAWE-FELSDRAVVRLMERLGEADYRI 304
Query: 331 QDGASEYIQ 339
+GA+E +Q
Sbjct: 305 AEGANEQVQ 313
>gi|401839265|gb|EJT42559.1| RFC3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 340
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 202/348 (58%), Gaps = 33/348 (9%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+S +NK +PWVEKYRP+T+D+V Q EV+S ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSAGADKKNKENLPWVEKYRPETLDEVYGQNEVISTVRKFVDQGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGRNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + +E + +A + L+E S GDMRR + LQSC A L GE +++DV+
Sbjct: 174 IERRIANVLVREKLKLSPEAEKALIELSNGDMRRVLNVLQSCKATLDNPGEDEISDDVIY 233
Query: 259 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAY---------SATQLFDQFHDIV--MS 307
P P D VL+ +ED A+ L D IV +
Sbjct: 234 ECCGAPRP-------SDLKTVLKSMLEDDWGTAHYTLNKIRSAKGLALIDLIEGIVKILE 286
Query: 308 ASSLSDKQ-KALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
L +++ + +L +LA+ + G ++ IQ GS VI A KT+
Sbjct: 287 EYDLQNEETRVQLLTRLADIEYSISKGGNDQIQ----GSAVIGAIKTS 330
>gi|171186449|ref|YP_001795368.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170935661|gb|ACB40922.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 328
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 185/335 (55%), Gaps = 33/335 (9%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV S L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC-PPFKIVILDEADSMTHAA 153
+RE LELNASD+RGI VIR++VK FA+ P PFK+VILDEAD+MT A
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTA---------PIKAPFKLVILDEADNMTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL+YI ++E
Sbjct: 117 QQALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKYIAKREG 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN----------EDVLEVTGVI 263
+ AL+ + E S GDMR+AI LQ A D+LE+ +
Sbjct: 177 IEVGEDALDLIYELSEGDMRKAINLLQVAAATNKVVDANAVAAAAAAVKPSDILELFNLA 236
Query: 264 PNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 323
L D + EK E + ++ + F ++ L D KA I E L
Sbjct: 237 --------LGGDYLKAREKLRELMYIKGVAGVDFIRAFQRELIRM-PLDDDLKAEIAELL 287
Query: 324 AECNARLQDGASEYIQ----ILDLGSIVIKANKTA 354
A+ + RL GA E IQ + LGSI +A A
Sbjct: 288 ADVDYRLTQGADEEIQMAYLLAKLGSIGKRAKPGA 322
>gi|410976710|ref|XP_003994756.1| PREDICTED: replication factor C subunit 5 [Felis catus]
Length = 340
Score = 228 bits (582), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 187/324 (57%), Gaps = 19/324 (5%)
Query: 26 GKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 15 AKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILA 72
Query: 86 ACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILD
Sbjct: 73 CAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILD 125
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ R
Sbjct: 126 EADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPR 185
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV-- 262
L+++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 186 LEHVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTGHPL 243
Query: 263 ---IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
I N ++ +L D E L+ + + + H V + +
Sbjct: 244 KSDIAN-ILDWMLNQDFTTAYRNITELKTLKGLALQDILTEIHLFVHRV-DFPSSVRVHL 301
Query: 320 LEKLAECNARLQDGASEYIQILDL 343
L K+A+ RL G +E IQ+ L
Sbjct: 302 LTKMADIEYRLSVGTNEKIQLSSL 325
>gi|405974676|gb|EKC39302.1| Replication factor C subunit 5 [Crassostrea gigas]
Length = 336
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 132/325 (40%), Positives = 191/325 (58%), Gaps = 24/325 (7%)
Query: 29 RNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
RN P +PWVEKYRPK +D++I ++++S + K + LPH LFYGPPGTGKTST++A
Sbjct: 11 RNNPNLPWVEKYRPKQLDELISHKDIISTIDKFVKEDRLPHLLFYGPPGTGKTSTILAVA 70
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
Q++ + +LELNASDDRGI ++R ++ +FA T + F +KIVILDEA
Sbjct: 71 KQIYSPKEFNSMVLELNASDDRGIGIVRGQILSFAS-TRTIFKSG------YKIVILDEA 123
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFC+ICNY+S II L SRC++FRF PL + M+ RLQ
Sbjct: 124 DAMTRDAQNALRRVIEKFTENTRFCIICNYLSKIIPALQSRCTRFRFGPLGTDQMVPRLQ 183
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
++ +QE ++ LV + GDMR+A+ LQS +VNED V + +P
Sbjct: 184 HVIQQEQCNVTEDGMKALVTLANGDMRKALNILQST---HMAHDVVNED--NVYTCVGHP 238
Query: 267 WIEKLLKVDSFQVLEKYIE--DLILEAYSATQLFDQFHDIVMSASS------LSDKQKAL 318
+ + ++ + E + + ILE + L DI+ + L K
Sbjct: 239 LRRDIENIINWVLNENFTSAYNNILEMKTEKGL--ALQDILTEVHTYVHRLDLPINVKIH 296
Query: 319 ILEKLAECNARLQDGASEYIQILDL 343
+L+K+AE RL G +E IQ+ L
Sbjct: 297 LLDKMAEVEHRLASGTNEKIQLSSL 321
>gi|448730730|ref|ZP_21713035.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
gi|445793171|gb|EMA43761.1| replication factor C small subunit [Halococcus saccharolyticus DSM
5350]
Length = 325
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 118/309 (38%), Positives = 184/309 (59%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+ DV+ + +V L+ ++ DLPH LF GP G GKT++ +A +++GD
Sbjct: 15 WIEKYRPETLADVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSSMAIAREVYGDD 74
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G++ ++I+ LDEAD++T AQ
Sbjct: 75 WRENFLELNASDERGIDVVRDRIKDFARTSFGGYD--------YRIIFLDEADALTSDAQ 126
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ +TRF L CNY S II P+ SRC+ FRF PLAE + ++ + E E +
Sbjct: 127 SALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYIRRVAENEGI 186
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
++ LV + GDMR+A+ LQ+ A ++G + +E V +T IE +++
Sbjct: 187 EVTDDGVDALVYAADGDMRKALNGLQAAATMEG--AVDDEAVYGITATARPEEIEAMVER 244
Query: 274 -VDS-FQVLEKYIEDLILEA-YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F ++DL+ +A + DQ H L D +LE++ E + R+
Sbjct: 245 ALDGDFTAARAKLDDLLTDAGLGGGDVIDQLHRSAWD-FDLDDAATVRLLERVGETDYRI 303
Query: 331 QDGASEYIQ 339
GA+E +Q
Sbjct: 304 TQGANERLQ 312
>gi|6677723|ref|NP_031396.1| replication factor C subunit 5 isoform 1 [Homo sapiens]
gi|728777|sp|P40937.1|RFC5_HUMAN RecName: Full=Replication factor C subunit 5; AltName:
Full=Activator 1 36 kDa subunit; Short=A1 36 kDa
subunit; AltName: Full=Activator 1 subunit 5; AltName:
Full=Replication factor C 36 kDa subunit; Short=RF-C 36
kDa subunit; Short=RFC36
gi|1498257|gb|AAB09784.1| replication factor C, 36-kDa subunit [Homo sapiens]
gi|12804841|gb|AAH01866.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|15530326|gb|AAH13961.1| Replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|29124997|gb|AAO63493.1| replication factor C (activator 1) 5, 36.5kDa [Homo sapiens]
gi|312151544|gb|ADQ32284.1| replication factor C (activator 1) 5, 36.5kDa [synthetic construct]
Length = 340
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 192/328 (58%), Gaps = 29/328 (8%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI +IR + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG +P
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP 242
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAY-SATQLFD----QFHDIV------MSASSLSDKQ 315
LK D +L+ + AY + T+L HDI+ +
Sbjct: 243 -----LKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSV 297
Query: 316 KALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G +E IQ+ L
Sbjct: 298 RIHLLTKMADIEYRLSVGTNEKIQLSSL 325
>gi|374325546|ref|YP_005083743.1| replication factor C small subunit [Pyrobaculum sp. 1860]
gi|356640812|gb|AET31491.1| replication factor C small subunit [Pyrobaculum sp. 1860]
Length = 319
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 107/209 (51%), Positives = 140/209 (66%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L+ + D+PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRGFVKSGDMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NY+S II+P+ SR FRF PL + + TRL+YI E E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYISGIIEPIQSRTVMFRFSPLPKEAVFTRLRYIAENEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
ALET+ E + GDMRRAI LQ A
Sbjct: 179 KISDDALETIYEFTQGDMRRAINALQIAA 207
>gi|342183622|emb|CCC93102.1| unnamed protein product, partial [Trypanosoma congolense IL3000]
Length = 290
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 115/277 (41%), Positives = 171/277 (61%), Gaps = 11/277 (3%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+N +PWVEKYRP T+ +V+ +E++ ++ + ++PH LFYGPPGTGKT+T+ A+ H
Sbjct: 14 KNCTLPWVEKYRPATLSEVVAHEEILETTQRLMDSGNMPHLLFYGPPGTGKTTTIKASAH 73
Query: 89 QLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP--PFKIVILDE 145
L+G + R +LE+NASDDRGI V+R++++ FA ++ FN K FK+VILDE
Sbjct: 74 YLYGKERIRANVLEMNASDDRGIDVVRNQIREFASTSSVFFNSASKTSAMSSFKLVILDE 133
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD M+ AQAALRR +EK T++ RFC++CN+++ II L SRC++FRF P+ + ML RL
Sbjct: 134 ADQMSSDAQAALRRIIEKYTRNVRFCIVCNHINKIIPALQSRCTRFRFAPVKKAAMLPRL 193
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPN 265
+I ++ES+ L S GDMRR + LQ+ A + GE I E V TG P
Sbjct: 194 AFIAQEESIPFTNDGLVAAFRLSNGDMRRCLNTLQASA-MSTGE-ITEESVYRTTGN-PT 250
Query: 266 P-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQL 297
P +E++L D + + + + S+T L
Sbjct: 251 PADVRGLVEEMLSSDYATSWNRVLRAVTEKGMSSTDL 287
>gi|158254806|dbj|BAF83374.1| unnamed protein product [Homo sapiens]
Length = 340
Score = 228 bits (582), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 192/328 (58%), Gaps = 29/328 (8%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI +IR + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG +P
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP 242
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAY-SATQLFD----QFHDIV------MSASSLSDKQ 315
LK D +L+ + AY + T+L HDI+ +
Sbjct: 243 -----LKSDIANILDWMLNQDFATAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSV 297
Query: 316 KALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G +E IQ+ L
Sbjct: 298 RIHLLTKMADIEYRLSVGTNEKIQLSSL 325
>gi|324511848|gb|ADY44927.1| Replication factor C subunit 5 [Ascaris suum]
Length = 341
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 190/323 (58%), Gaps = 10/323 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DD++ +E+++ L K + LPH LFYGPPGTGKTS ++ A +F
Sbjct: 12 MPWVEKYRPATLDDLVSHEEIIATLAKLVKKRRLPHLLFYGPPGTGKTSAILVAARMMFT 71
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+LELNASDDRGI ++RD++ FAQ +++GK K++ILDEAD+MT
Sbjct: 72 PKQLASMVLELNASDDRGIGIVRDQIMNFAQTKTLHVDENGKS--HIKLIILDEADAMTK 129
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++ RFC+ICNY+S II + SRC++FRF PL E +L RL++I +
Sbjct: 130 DAQNALRRVIEKFTENVRFCIICNYLSKIIPAVQSRCTRFRFAPLKEEQILPRLRHIAKS 189
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
ES+ L++ +GGDMRR + LQS A I E V G IE +
Sbjct: 190 ESLKLTEDGERALMKLAGGDMRRVLNILQSTA--MAFPKIDEESVYLCVGQPLPSVIEDI 247
Query: 272 LKV---DSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
+++ DSF+ IE + L A++ + + D V SD L++ ++A+
Sbjct: 248 VRILLNDSFEDAFTKIEGIRCLHAFALSDILASMQDAVYQLDIPSD-VTCLLIAQMAQIE 306
Query: 328 ARLQDGASEYIQILDLGSIVIKA 350
RL G ++ +Q+ L + ++A
Sbjct: 307 YRLARGCTDRMQLAALIAAFVEA 329
>gi|198413770|ref|XP_002129710.1| PREDICTED: similar to replication factor C (activator 1) 5 (36.5
kDa) [Ciona intestinalis]
Length = 327
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 195/321 (60%), Gaps = 20/321 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+++DD+I ++++S + L+ LPH LFYGPPGTGKTST++A +L+
Sbjct: 8 LPWVEKYRPESLDDLISHEDILSTISGFLAQNRLPHLLFYGPPGTGKTSTILACARKLYS 67
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI V+R+++ +FA T + FN+ FK++ILDEAD+MT
Sbjct: 68 TTQFNSMVLELNASDDRGIGVVRNQILSFAS-TRTIFNKG------FKLIILDEADAMTK 120
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR MEK ++TRFCLICNY++ II + SRC++FRF PL + + +RL+YI +
Sbjct: 121 DAQNALRRVMEKFMENTRFCLICNYLTKIIPAIQSRCTRFRFGPLTTDKISSRLEYIIKV 180
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEK 270
E + L LV + GDMR+A+ LQS + V+ED V + TG I+K
Sbjct: 181 EQLNVTEDGLNALVTLANGDMRKALNILQSSSM---AYNEVDEDGVYKCTGRPRRDDIKK 237
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQKALILEKLAEC 326
++K + + + I +L + A Q + +Q H V + +L+KLA+
Sbjct: 238 IMKWMLNEDYTTAYRSIMELNMTTSMALQDIIEQIHLFVHEV-HFPVAVRIYLLDKLADI 296
Query: 327 NARLQDGASEYIQILDLGSIV 347
RL G SE +Q LGS+V
Sbjct: 297 EHRLASGTSEKLQ---LGSLV 314
>gi|194859928|ref|XP_001969482.1| GG10129 [Drosophila erecta]
gi|190661349|gb|EDV58541.1| GG10129 [Drosophila erecta]
Length = 332
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 184/319 (57%), Gaps = 28/319 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + +S LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 PQQFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CDTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL+++ M+ RL+ I E
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEA 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEK 270
E+V L+ + GDMR+ + LQS VNED V G IE+
Sbjct: 184 EAVQITDDGKRALLTLAKGDMRKVLNVLQSTVM---AFDTVNEDNVYMCVGYPLRQDIEQ 240
Query: 271 LLKV--------DSFQVLE--KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
+LK DSF+ +E KY L LE + + H VM LI+
Sbjct: 241 ILKALLSGNSLEDSFKTVESAKYARGLALE-----DIITELHLFVMRLELPMSVMNKLIV 295
Query: 321 EKLAECNARLQDGASEYIQ 339
KLA+ RL G +E Q
Sbjct: 296 -KLAQIEERLAKGCTEVAQ 313
>gi|19921076|ref|NP_609399.1| replication factor C subunit 3 [Drosophila melanogaster]
gi|195339815|ref|XP_002036512.1| GM18361 [Drosophila sechellia]
gi|195578201|ref|XP_002078954.1| GD23698 [Drosophila simulans]
gi|7533196|gb|AAF63387.1|AF247499_1 replication factor C subunit 3 [Drosophila melanogaster]
gi|21430740|gb|AAM51048.1| SD11293p [Drosophila melanogaster]
gi|22946159|gb|AAF52944.2| replication factor C subunit 3 [Drosophila melanogaster]
gi|194130392|gb|EDW52435.1| GM18361 [Drosophila sechellia]
gi|194190963|gb|EDX04539.1| GD23698 [Drosophila simulans]
gi|220950744|gb|ACL87915.1| RfC3-PA [synthetic construct]
gi|220959368|gb|ACL92227.1| RfC3-PA [synthetic construct]
Length = 332
Score = 228 bits (581), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 135/319 (42%), Positives = 184/319 (57%), Gaps = 28/319 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + +S LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 MPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 PQQFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CDTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL+++ M+ RL+ I E
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEA 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEK 270
E+V L+ + GDMR+ + LQS VNED V G IE+
Sbjct: 184 EAVQITEDGKRALLTLAKGDMRKVLNVLQSTVM---AFDTVNEDNVYMCVGYPLRQDIEQ 240
Query: 271 LLKV--------DSFQVLE--KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
+LK DSF+ +E KY L LE + + H VM LI+
Sbjct: 241 ILKALLSGSSLEDSFKTVESAKYARGLALE-----DIITELHLFVMRLELPMSVMNKLIV 295
Query: 321 EKLAECNARLQDGASEYIQ 339
KLA+ RL G +E Q
Sbjct: 296 -KLAQIEERLAKGCTEVAQ 313
>gi|389745640|gb|EIM86821.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 358
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 190/331 (57%), Gaps = 36/331 (10%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
++++ +PWVEKYRP ++DDV+ +++ S ++K + LPH LFYGPPGTGKTST++A
Sbjct: 32 SQDETLPWVEKYRPNSLDDVVSHKDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVA 91
Query: 88 HQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
+++G Y+++ LELNASDDRGI V+R+++K FA +T + F++ +K++ILDEAD
Sbjct: 92 RRIYGAGYKKQTLELNASDDRGIDVVREQIKQFA-ETRTLFSKG------YKLIILDEAD 144
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
MT AAQAALRR +E+ TK+ RFC+ICNYV+ I+ + SRC++FRF PL + R+ +
Sbjct: 145 MMTTAAQAALRRVIEQYTKNVRFCIICNYVNKIVPAIQSRCTRFRFSPLPMKEVEKRVDH 204
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW 267
+ E V + L++ S GDMRRA+ LQ+C G +V TG P P
Sbjct: 205 VVAAEGVKLTEDGKKALLKLSKGDMRRALNILQACHAAYDQTG--ETEVYNCTGS-PEPA 261
Query: 268 -IEKLLK---VDSFQVLEKYI-----------EDLILEAYSATQLFDQFHDIVMSASSLS 312
IE ++ D F I +DL++ AY + D
Sbjct: 262 DIETVVNSMITDEFTTSYHMISTLKTERGLALQDLLIGAYEYIEGID-----------FP 310
Query: 313 DKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +L+ LA RL G SE IQ+ L
Sbjct: 311 PAARVYLLDHLATTEHRLSTGGSEKIQLTAL 341
>gi|397524983|ref|XP_003832459.1| PREDICTED: replication factor C subunit 5 [Pan paniscus]
Length = 340
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 192/328 (58%), Gaps = 29/328 (8%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG +P
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP 242
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAY-SATQLFD----QFHDIV------MSASSLSDKQ 315
LK D +L+ + AY + T+L HDI+ +
Sbjct: 243 -----LKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSV 297
Query: 316 KALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G +E IQ+ L
Sbjct: 298 RIHLLTKMADIEYRLSVGTNEKIQLSSL 325
>gi|390600120|gb|EIN09515.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 354
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 189/321 (58%), Gaps = 25/321 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV+ +++ ++ + LPH LFYGPPGTGKTST++A +++G
Sbjct: 36 LPWVEKYRPVTLDDVVSHKDITCTIENFIQKNRLPHLLFYGPPGTGKTSTILAVARRIYG 95
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D +R++ILELNASDDRGI V+R+++K FA +T + F++ +K++ILDEAD MT A
Sbjct: 96 DDFRKQILELNASDDRGIDVVREQIKQFA-ETRTLFSKG------YKLIILDEADMMTQA 148
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF PL + R+Q + + E
Sbjct: 149 AQAALRRVIEQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPIPEVERRVQTVVDAE 208
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKL 271
V + L++ S GDMRRA+ LQ+C + I ++ TG P+P IE +
Sbjct: 209 GVQLREDGKKALLKLSKGDMRRALNVLQACH--AAYDEIGETEIYNCTGN-PHPSDIETI 265
Query: 272 LK---VDSFQV-LEKYIEDLILEAYSATQ-----LFDQFHDIVMSASSLSDKQKALILEK 322
+ D F + I L E A Q FD I L +A +L+
Sbjct: 266 VNSMLADEFTTSYQSVINALKTERGLALQDLLAGAFDYIETI-----ELKPHARAYLLDH 320
Query: 323 LAECNARLQDGASEYIQILDL 343
LA RL G SE IQ+ L
Sbjct: 321 LATTEYRLSTGGSEKIQLTAL 341
>gi|444723208|gb|ELW63869.1| Replication factor C subunit 5 [Tupaia chinensis]
Length = 341
Score = 228 bits (580), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 134/323 (41%), Positives = 189/323 (58%), Gaps = 19/323 (5%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
KTRN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 17 KTRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILAC 74
Query: 87 CHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDE
Sbjct: 75 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDE 127
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL
Sbjct: 128 ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRL 187
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV--- 262
+++ +E+V ++ L+ S GDMRRA+ LQS G + E V TG
Sbjct: 188 EHVVGEENVDITEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEETVHTCTGHPLR 245
Query: 263 --IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
I N ++ +L D +E L+ + + + H V + +L
Sbjct: 246 SDIAN-ILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRV-DFPSSVRVHLL 303
Query: 321 EKLAECNARLQDGASEYIQILDL 343
K+A+ RL G +E IQ+ L
Sbjct: 304 TKMADIEYRLSVGTNEKIQLSSL 326
>gi|452205944|ref|YP_007486066.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
gi|452082044|emb|CCQ35295.1| replication factor C small subunit [Natronomonas moolapensis
8.8.11]
Length = 324
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 185/310 (59%), Gaps = 17/310 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+ +D+++ + + LK+ ++ DLPH LF GP GTGKT++ IA +++GD
Sbjct: 14 WIEKYRPQALDEIVGHEGITERLKQYINQQDLPHLLFAGPAGTGKTTSSIAVAKEIYGDD 73
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD RGI V+RD++K+FA+ + G++ +++ LDEAD++T AQ
Sbjct: 74 WRENFLELNASDQRGIDVVRDRIKSFARASFGGYDH--------RVIFLDEADALTSEAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL E + +++ I E E +
Sbjct: 126 SALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGEAAIEEQIEAIAEAEGI 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLK 273
++ LV + GDMR+AI LQ+ A + G+V+E+ V +T IE ++
Sbjct: 186 EITDDGMDALVYAAAGDMRKAINGLQAAAVVG---GVVDEEAVYTITSTARPEEIETMVS 242
Query: 274 V---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
F ++ L+ + + + DQ H V L +++ ++E++ E + R
Sbjct: 243 AALDGDFTAARAQLDTLLTDVGIAGGDIIDQMHRSVWE-FDLGEREAVRLMERVGEADYR 301
Query: 330 LQDGASEYIQ 339
+ GA+E IQ
Sbjct: 302 ITAGANEQIQ 311
>gi|145590269|ref|YP_001152271.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514158|sp|A4WGV2.1|RFCS1_PYRAR RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|145282037|gb|ABP49619.1| Replication factor C [Pyrobaculum arsenaticum DSM 13514]
Length = 329
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 181/307 (58%), Gaps = 16/307 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + G ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL++I + E +
Sbjct: 119 QALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGI 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLK 273
A++ + E S GDMR+AI LQ A +V+ + V T +I + +L
Sbjct: 179 ELRDDAIDLIYEVSEGDMRKAINLLQVAA---ATSKVVDANAVASATTMIRPADVVELFN 235
Query: 274 V----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ D + EK E + ++ + F ++ L D+ KA I E LAE + R
Sbjct: 236 LAFNGDVTKAREKLRELMYVKGIAGIDFIRAFQRELIRM-PLDDEVKAEIAELLAEVDYR 294
Query: 330 LQDGASE 336
L G+ E
Sbjct: 295 LTQGSDE 301
>gi|393240465|gb|EJD47991.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 348
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 132/344 (38%), Positives = 197/344 (57%), Gaps = 25/344 (7%)
Query: 13 DAPSSSKTSVSTSGKTRNKP--------VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA 64
DAP+ ++ GK + P +PWVEKYRP + DV+ + + ++ +
Sbjct: 3 DAPAFP-SAAKGKGKAVDPPKPAYDPENLPWVEKYRPVALSDVVSHDGITTTIENFIEKN 61
Query: 65 DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQT 124
LPH LFYGPPGTGKTST++A +++G+ Y+ +ILELNASDDRGI V+R+++K FA+ T
Sbjct: 62 RLPHLLFYGPPGTGKTSTILAVARRIYGNDYKRQILELNASDDRGIDVVREQIKQFAE-T 120
Query: 125 ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
+ F + FK++ILDEAD MT AAQ+ALRR +E+ TK+ RFC+ICNYV+ I +
Sbjct: 121 RTLFRRS------FKLIILDEADMMTQAAQSALRRIIEQYTKNVRFCIICNYVNKIAPAI 174
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRC++FRF PL + R++++ E E V + L+ L++ S GDMRRA+ LQ+C
Sbjct: 175 QSRCTRFRFSPLPIQDVERRVRHVIEAEDVKIEPDGLDALLKLSKGDMRRALNILQACH- 233
Query: 245 LKGGEGIVNEDVLEVTGVIPNP----WIEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFD 299
+ ++ TG P+P I + + + F I + +E A Q L
Sbjct: 234 -AAYDRTTETEIYNCTGS-PHPADIQAIVQSMMTEEFTTAYHNISRIRVERGLALQDLIT 291
Query: 300 QFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+D V S L + + +L+ LA+ RL G SE +Q L
Sbjct: 292 GAYDYVESI-ELPPQARVYLLDHLADTEHRLSTGGSEKLQFTAL 334
>gi|114647195|ref|XP_001156572.1| PREDICTED: replication factor C subunit 5 isoform 5 [Pan
troglodytes]
Length = 340
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 192/328 (58%), Gaps = 29/328 (8%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG +P
Sbjct: 188 HVVEEEKVGISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP 242
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAY-SATQLFD----QFHDIV------MSASSLSDKQ 315
LK D +L+ + AY + T+L HDI+ +
Sbjct: 243 -----LKSDIANILDWMLNRDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSV 297
Query: 316 KALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G +E IQ+ L
Sbjct: 298 RIHLLTKMADIEYRLSVGTNEKIQLSSL 325
>gi|448364052|ref|ZP_21552646.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
gi|445644940|gb|ELY97947.1| replication factor C small subunit [Natrialba asiatica DSM 12278]
Length = 331
Score = 228 bits (580), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 124/334 (37%), Positives = 194/334 (58%), Gaps = 23/334 (6%)
Query: 13 DAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
DA ++ + ST GKT W+EKYRP+ +D++ + +V L++ + DLPH +F
Sbjct: 3 DADVDTEVAESTPGKTE----VWIEKYRPERLDEIKGHENIVPRLERYVEQDDLPHLMFA 58
Query: 73 GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
GP GTGKT+ A +++GD +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 59 GPAGTGKTTAAQAIAREVYGDDWRENFLELNASDQRGIDVVRDRIKDFARASFGGYDH-- 116
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FR
Sbjct: 117 ------RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFR 170
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F L E+ + +++ I E E + ++ LV + GDMR+AI LQ+ A + GE +
Sbjct: 171 FTELTEDAIEAQVREIAETEGIEVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVD 228
Query: 253 NEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSA 308
E V +T +E+++ F +EDL+ + + + DQ H SA
Sbjct: 229 EETVFAITATARPEEVEEMVDHAIAGDFTAARAALEDLLTDRGLAGGDVIDQLH---RSA 285
Query: 309 SSLSDKQKALI--LEKLAECNARLQDGASEYIQI 340
+ ++A + LE+L E + R+ +GA+E +Q+
Sbjct: 286 WTFDIPEQATVRLLERLGEVDFRITEGANERLQL 319
>gi|124810138|ref|XP_001348775.1| replication factor C3 [Plasmodium falciparum 3D7]
gi|11559500|gb|AAG37985.1|AF069296_1 replication factor C3 [Plasmodium falciparum]
gi|23497675|gb|AAN37214.1|AE014826_13 replication factor C3 [Plasmodium falciparum 3D7]
Length = 344
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 128/327 (39%), Positives = 189/327 (57%), Gaps = 22/327 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++D+I ++V+S +K+ + +LPH L +GPPGTGKTST++A C +L+GD
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIKRFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGD 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+LELNASDDRGI VIRD++KTFA ++ + + K K++ILDEAD MT+ A
Sbjct: 74 KRSSFVLELNASDDRGINVIRDQIKTFA-ESKNHYTTCEKTT--LKLIILDEADHMTYPA 130
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q A+RR ME K+ RFCL+CNYV+ I + SRC+ FRF PL + M + I + E+
Sbjct: 131 QNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSEN 190
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
V +++L+ GDMRR + CLQ + L +++E+V+ T IP P K
Sbjct: 191 VNLTEGGIDSLIRVGHGDMRRILNCLQVVS-LSHKNLVIDENVILSTLDIPLPSETK--- 246
Query: 274 VDSFQVLEKYIEDLILEAYS--ATQLFDQFH---DIVMS------ASSLSDKQKALILEK 322
++LE + + I E+Y + +D+ + DI+M D L+L+
Sbjct: 247 ----KILEYFTKGSIKESYEFVSNLQYDKGYSTKDIMMCLYESVLTYDFPDSAFCLLLKN 302
Query: 323 LAECNARLQDGASEYIQILDLGSIVIK 349
E R GASE I + L S ++
Sbjct: 303 FGEIEERCSSGASEQITLSALISAFVE 329
>gi|354466990|ref|XP_003495954.1| PREDICTED: replication factor C subunit 5 [Cricetulus griseus]
Length = 338
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 134/327 (40%), Positives = 186/327 (56%), Gaps = 29/327 (8%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 14 RARNLPWVEKYRPQTLADLISHQDILSSIQKFISEDRLPHLLLYGPPGTGKTSTILACAK 73
Query: 89 QLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD
Sbjct: 74 QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEAD 126
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL++
Sbjct: 127 AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 186
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW 267
+ ++E+V ++ L+ S GDMRRA+ LQS G + E V TG +P
Sbjct: 187 VVQEENVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP- 240
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQ-----FHDIVMSAS------SLSDKQK 316
LK D +L+ + AY HDI+ +
Sbjct: 241 ----LKTDIANILDWMLNQDFTTAYRHIMELKTLKGLALHDILTEVHLFVHRVDFPSSVR 296
Query: 317 ALILEKLAECNARLQDGASEYIQILDL 343
+L K+A+ RL G SE IQ+ L
Sbjct: 297 IHLLTKMADIEYRLSVGTSEKIQLSSL 323
>gi|257387186|ref|YP_003176959.1| replication factor C small subunit [Halomicrobium mukohataei DSM
12286]
gi|257169493|gb|ACV47252.1| Replication factor C [Halomicrobium mukohataei DSM 12286]
Length = 322
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 187/310 (60%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+ DV+ + +V L+ + DL H LF GP GTGKT++ A +L+GD
Sbjct: 13 WIEKYRPQTLSDVVGHETIVERLQSYVDRNDLSHMLFAGPAGTGKTTSATAIARELYGDD 72
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++E LELNASD+RGI V+RD++K+FA+ + G + ++I+ LDEAD++T AQ
Sbjct: 73 WQEHFLELNASDERGIDVVRDRIKSFARTSFGGVD--------YRIIFLDEADALTSDAQ 124
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF + CNY S II P+ SRC+ FRF PL + + +++I ++E +
Sbjct: 125 SALRRTMEQFSNNVRFIMSCNYSSQIIDPIQSRCAVFRFSPLGDEAVEAEIRHIADEEGI 184
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
++ LV +GGDMR+AI LQ+ + G+ + E V +T I+ +++
Sbjct: 185 ELTDDGVDALVYAAGGDMRKAINGLQAAS--VSGDVVDEEAVFAITSTARPEVIQGMVQD 242
Query: 274 -VDS-FQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F ++DLI E + + DQ H + + D+Q IL+++ E + R+
Sbjct: 243 AIDGDFTAARSQLDDLITDEGIAGGDIIDQLHRSIWEF-DVPDEQAVRILDRVGETDYRI 301
Query: 331 QDGASEYIQI 340
+GA+E IQ+
Sbjct: 302 TEGANERIQL 311
>gi|336368487|gb|EGN96830.1| hypothetical protein SERLA73DRAFT_111563 [Serpula lacrymans var.
lacrymans S7.3]
gi|336381281|gb|EGO22433.1| hypothetical protein SERLADRAFT_357265 [Serpula lacrymans var.
lacrymans S7.9]
Length = 354
Score = 227 bits (579), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 133/338 (39%), Positives = 196/338 (57%), Gaps = 40/338 (11%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV+ +++ + ++K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 37 LPWVEKYRPVTLDDVVSHKDITTTIEKFIDKNRLPHLLFYGPPGTGKTSTILAVARRIYG 96
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR++ILELNASDDRGI V+R+++K FA +T + F + FK++ILDEAD MT
Sbjct: 97 PEYRKQILELNASDDRGIDVVREQIKQFA-ETRTLFARG------FKLIILDEADMMTQQ 149
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF PL + R+ + E E
Sbjct: 150 AQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIVEVEKRIGTVIEAE 209
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKL 271
V + L++ S GDMRRA+ LQ+C + + ++ TG P+P IE +
Sbjct: 210 HVKLTEDGKKALLKLSKGDMRRALNVLQACH--AAYDSVGETEIYNCTGN-PHPSDIENI 266
Query: 272 LK-------VDSFQVLEKY-------IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 317
+ S+Q++ ++DLI AY + + + +
Sbjct: 267 VNSMLSDEFTTSYQMISTMKTERGLALQDLISGAYEYIETIE-----------FKPQARI 315
Query: 318 LILEKLAECNARLQDGASEYIQILDLGSIVIKANKTAV 355
+L+ LA RL GASE IQ+ S ++ A K AV
Sbjct: 316 YLLDYLATTEHRLSAGASEKIQL----SAMLGAFKNAV 349
>gi|431914245|gb|ELK15503.1| Replication factor C subunit 5 [Pteropus alecto]
Length = 345
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 141/329 (42%), Positives = 193/329 (58%), Gaps = 23/329 (6%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+ ++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 15 AAKIRN--LPWVEKYRPQALNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 72
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VIL
Sbjct: 73 ACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFA-STRTIFKKG------FKLVIL 125
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 126 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 185
Query: 204 RLQYICEQESVMCD---FKALETLVET-SGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
RL+++ E+E V KAL TL +T S GDMRRA+ LQS + G + E V
Sbjct: 186 RLEHVVEEEKVDISEDGMKALVTLSKTLSSGDMRRALNILQSTSMAFG--KVTEETVYTC 243
Query: 260 TGV-----IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 314
TG I N ++ +L D +E L+ + + + H V S
Sbjct: 244 TGHPLKSDIAN-ILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRVDFPSSV 302
Query: 315 QKALILEKLAECNARLQDGASEYIQILDL 343
+ L L K+A+ RL G SE IQ+ L
Sbjct: 303 RIHL-LTKMADIEYRLSVGTSEKIQLSSL 330
>gi|410210156|gb|JAA02297.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410251550|gb|JAA13742.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410296138|gb|JAA26669.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
gi|410333015|gb|JAA35454.1| replication factor C (activator 1) 5, 36.5kDa [Pan troglodytes]
Length = 340
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 192/328 (58%), Gaps = 29/328 (8%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG +P
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP 242
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAY-SATQLFD----QFHDIV------MSASSLSDKQ 315
LK D +L+ + AY + T+L HDI+ +
Sbjct: 243 -----LKSDIANILDWMLNRDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSV 297
Query: 316 KALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G +E IQ+ L
Sbjct: 298 RIHLLTKMADIEYRLSVGTNEKIQLSSL 325
>gi|193676219|ref|XP_001942989.1| PREDICTED: replication factor C subunit 5-like [Acyrthosiphon
pisum]
Length = 329
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 138/328 (42%), Positives = 189/328 (57%), Gaps = 25/328 (7%)
Query: 29 RNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
+ KP +PWVEKYRP T+DD+I ++++ + K + LPH LFYGPPGTGKTST++A
Sbjct: 3 KAKPNLPWVEKYRPNTLDDLISHEDIIQTIGKFIKEDQLPHLLFYGPPGTGKTSTILACA 62
Query: 88 HQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ +R +LELNASDDRGI V+R +V FA T + F FK++ILDEA
Sbjct: 63 KQLYTPAQFRSMVLELNASDDRGINVVRGQVLNFAS-TRTIFKSG------FKLIILDEA 115
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT+ AQ ALRR +EK T + RFCLICNY+S II L SRC++FRF PL ++ RL+
Sbjct: 116 DAMTNDAQNALRRIIEKFTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLDSKQIMPRLE 175
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
Y+ EQE V + L++ + GDMR+ + LQS A VNED V + +P
Sbjct: 176 YVVEQEKVKVTEDGKKALIDLAQGDMRKVLNILQSAA---TAFPEVNED--SVYTCVGHP 230
Query: 267 W------IEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQKALI 319
I K L D F K I++L ++ A Q + + H + D I
Sbjct: 231 LKSDIMNILKWLLNDDFSTTFKKIQELKIQKGLALQDILTELHTFLYRLDLPPDSLIE-I 289
Query: 320 LEKLAECNARLQDGASEYIQILDLGSIV 347
L ++A+ RL G SE I LGS++
Sbjct: 290 LTEMADIEIRLNGGTSEKIH---LGSLI 314
>gi|352682669|ref|YP_004893193.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275468|emb|CCC82115.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 321
Score = 227 bits (579), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 143/206 (69%), Gaps = 7/206 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK+ ++++ +E+ + L + + ++PH LFYGPPGTGKT+T + +L+G+
Sbjct: 6 WFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYGER 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ +G PFK+V+LDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPAG-------GAPFKLVVLDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME +TRF L+ NYVS II+P+ SRC+ FRF PL ++ ++ RL+YI EQE +
Sbjct: 119 QALRRIMEMYAATTRFVLLANYVSGIIEPIQSRCAVFRFSPLPKDAVVARLRYIAEQEGL 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQ 240
ALE + + + GDMRRAIT LQ
Sbjct: 179 KVTQDALEAIFDFTQGDMRRAITALQ 204
>gi|156100055|ref|XP_001615755.1| replication factor C3 [Plasmodium vivax Sal-1]
gi|148804629|gb|EDL46028.1| replication factor C3, putative [Plasmodium vivax]
Length = 344
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 190/331 (57%), Gaps = 30/331 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++D+I ++V+S ++K + +LPH L +GPPGTGKTST++A C +L+G+
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+LELNASDDRGI V+RD++KTFA ++ + +N K K++ILDEAD MT+ A
Sbjct: 74 SRSSFVLELNASDDRGISVVRDQIKTFA-ESKNHYNTCEKTT--LKLIILDEADHMTYPA 130
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q A+RR ME K+ RFCL+CNYV+ I + SRC+ FRF PL + M+ + I + E+
Sbjct: 131 QNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSEN 190
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WI 268
V LE+L+ GDMRR + CLQ + L ++++V+ T IP P +
Sbjct: 191 VDLTQDGLESLIRVGRGDMRRILNCLQVVS-LSHKNMTIDQNVILSTLDIPLPEEVKDIL 249
Query: 269 EKLLKV---DSFQVLEKY-------IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
E L K +S++ + K I+D+++ Y + +D D L
Sbjct: 250 EHLTKSTIKESYEFVTKLQCSKGYSIKDIMVNLYESILTYD-----------FPDSAVCL 298
Query: 319 ILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+L+ E R GA+E I + L S I+
Sbjct: 299 LLKNFGEIEERCSTGANEQITLSALISAFIE 329
>gi|392574508|gb|EIW67644.1| hypothetical protein TREMEDRAFT_69661 [Tremella mesenterica DSM
1558]
Length = 350
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 135/336 (40%), Positives = 194/336 (57%), Gaps = 28/336 (8%)
Query: 17 SSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
++ +++ S K N+ VEKYRP T+D+V+ Q++ + ++K + LPH L YGPPG
Sbjct: 18 NAMSTLMASAKADNR----VEKYRPNTLDEVVSHQDITNTIEKFIEAGRLPHLLLYGPPG 73
Query: 77 TGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP 136
TGKTST++A +L+G Y++ ILELNASDDRGI V+RD++K+FA T F++
Sbjct: 74 TGKTSTVLALARRLYGPPYQKHILELNASDDRGIDVVRDQIKSFA-MTKVLFSKG----- 127
Query: 137 PFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPL 196
FK+VILDEAD MT AAQ+ALRR +E TK+ RFC++CNYV+ I + SRC++FRF PL
Sbjct: 128 -FKLVILDEADMMTQAAQSALRRVIETHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPL 186
Query: 197 AENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDV 256
E + ++ + E+E V L++ S GDMRRA+ LQ+C + I V
Sbjct: 187 PEKEVQRKVDDVVEKEGVNLTDDGRAALLKLSKGDMRRALNVLQACH--AAYDKIDEMAV 244
Query: 257 LEVTGVIPNPW-IEKLLK---VDSFQVLEKYIEDLILEAYSATQ-----LFDQFHDIVMS 307
TG P+P IE++++ D F I L LE A Q +D I M
Sbjct: 245 YTCTGN-PHPRDIERVVQSMMADEFGTSYSLITSLKLEKGLALQDLISGAYDFLQTIEMP 303
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
S+ + +L+ L C RL G SE +Q+ L
Sbjct: 304 PSA-----RVYLLDHLGSCEHRLSLGGSEKMQLTAL 334
>gi|389585221|dbj|GAB67952.1| replication factor C3 [Plasmodium cynomolgi strain B]
Length = 344
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 126/331 (38%), Positives = 189/331 (57%), Gaps = 30/331 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++D+I ++V+S ++K + +LPH L +GPPGTGKTST++A C +L+G+
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+LELNASDDRGI V+RD++KTFA ++ + +N K K++ILDEAD MT+ A
Sbjct: 74 SRSSFVLELNASDDRGISVVRDQIKTFA-ESKNHYNTCEK--TSLKLIILDEADHMTYPA 130
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q A+RR ME K+ RFCL+CNYV+ I + SRC+ FRF PL + M+ + I + E+
Sbjct: 131 QNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMINKALDIAKSEN 190
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WI 268
V LE+L+ GDMRR + CLQ + L ++++V+ T IP P +
Sbjct: 191 VDLTKDGLESLIRVGRGDMRRILNCLQVVS-LSHKNMTIDQNVILSTLDIPLPEEVKDIL 249
Query: 269 EKLLKV---DSFQVLEKY-------IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
E K +S++ + K I+D+++ Y + +D D L
Sbjct: 250 EHFTKSTIKESYEFVTKLQSTKGYSIKDIMVNLYESILTYD-----------FPDSAVCL 298
Query: 319 ILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+L+ E R GA+E I + L S I+
Sbjct: 299 LLKSFGEIEERCSSGANEQITLSALISAFIE 329
>gi|328774020|gb|EGF84057.1| hypothetical protein BATDEDRAFT_84775 [Batrachochytrium
dendrobatidis JAM81]
Length = 358
Score = 227 bits (578), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 132/322 (40%), Positives = 187/322 (58%), Gaps = 23/322 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +D++I ++++S + + + LPH LFYGPPGTGKTST++A +L+G
Sbjct: 36 LPWVEKYRPSRLDELISHKDIISTIVRFIDENKLPHMLFYGPPGTGKTSTILACARKLYG 95
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D +R ILELNASDDRGI V+R+++K FA T F+ FK++ILDEAD+MT A
Sbjct: 96 DKFRSMILELNASDDRGIDVVREQIKNFA-STRKLFSSG------FKLIILDEADAMTQA 148
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E+ TK+ RFCLICNYV II L SRC++FRF PL E + R+ +I QE
Sbjct: 149 AQNALRRVIEQYTKNVRFCLICNYVGKIIPALQSRCTRFRFAPLEEAQISDRITHIINQE 208
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----W 267
+ + +++ S GDMRRA+ LQ+ G E + TG P P
Sbjct: 209 GINITQAGRQAVLKLSQGDMRRALNILQAVH--TGYPEATEETIYACTGS-PCPADIDQI 265
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLS--DKQKALILEKLAE 325
+ L +D L+ +L+ L D +V+S + L + ++EKLA+
Sbjct: 266 VAWLFNMDYTTALKSV---KLLKHEKGLALADLLSGLVVSLAGLELPKVSRIFLMEKLAD 322
Query: 326 CNARLQDGASEYIQILDLGSIV 347
+ G SE IQ LG++V
Sbjct: 323 IEYNIGVGCSEDIQ---LGAMV 341
>gi|221059177|ref|XP_002260234.1| replication factor C3 [Plasmodium knowlesi strain H]
gi|193810307|emb|CAQ41501.1| replication factor C3, putative [Plasmodium knowlesi strain H]
Length = 344
Score = 226 bits (577), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 125/331 (37%), Positives = 189/331 (57%), Gaps = 30/331 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++D+I ++V+S ++K + +LPH L +GPPGTGKTST++A C +L+G+
Sbjct: 14 PWVEKYRPNVLNDIISHEQVISTIQKFVQKGELPHLLLHGPPGTGKTSTILAVCKELYGE 73
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+LELNASDDRGI V+RD++KTFA ++ + +N K K++ILDEAD MT+ A
Sbjct: 74 SRSSFVLELNASDDRGISVVRDQIKTFA-ESKNHYNTCEKTA--LKLIILDEADHMTYPA 130
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q A+RR ME K+ RFCL+CNYV+ I + SRC+ FRF PL + M+ + I + E+
Sbjct: 131 QNAMRRIMENYAKNVRFCLLCNYVNKITPAIQSRCTSFRFSPLKKEYMVNKALDIAKSEN 190
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKLL 272
V L++L+ GDMRR + CLQ + L ++++V+ T IP P ++++L
Sbjct: 191 VELTKDGLDSLIHVGRGDMRRILNCLQVVS-LSHKNMTIDQNVILSTLDIPLPGEVKEIL 249
Query: 273 K-------------VDSFQVLEKY-IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
V Q + Y I+D+++ Y + +D D L
Sbjct: 250 NHFTKSTMKESYEFVTKLQSTKGYSIKDIMVNLYESILTYD-----------FPDSAMCL 298
Query: 319 ILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+L+ E R GA+E I + L S I+
Sbjct: 299 LLKNFGEIEERCSSGANEQITLSALISAFIE 329
>gi|224009073|ref|XP_002293495.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
gi|220970895|gb|EED89231.1| replication factor C 36 kDa subunit [Thalassiosira pseudonana
CCMP1335]
Length = 321
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 189/328 (57%), Gaps = 24/328 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D++ +++V++L + + +LPH L YGPPGTGKTST++AA +++G
Sbjct: 1 MPWVEKYRPAKLEDLVAHEDIVAILTRLIDSDNLPHLLLYGPPGTGKTSTIVAAAKRMYG 60
Query: 93 DM--YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEAD 147
Y LELNASD RGI V+R+++K FA Q SG K++ILDEAD
Sbjct: 61 STAAYSSMALELNASDSRGIDVVRNEIKEFAGTRQLFHSGI----------KLIILDEAD 110
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK TK+ RFCLICNYVS II L SRC++FRF PL + + +RL
Sbjct: 111 AMTSDAQFALRRVIEKHTKNARFCLICNYVSKIIPALQSRCTRFRFAPLKQEQIRSRLVE 170
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP- 266
+ + E ++ +++ SGGDMRR + LQS A G IV+E + +T P P
Sbjct: 171 VADAEKCNYTEDGIQAILDLSGGDMRRVLNLLQSTAM---GSEIVDEKNVYMTSGAPLPR 227
Query: 267 ----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
+E L+ ++ V EK + Y+ T + + + V A + A++L+
Sbjct: 228 DVHVAMEWLMNLEFKDVYEKLTNMCSTKGYALTDILTELANKVTEA-NFPPGVLAVLLDG 286
Query: 323 LAECNARLQDGASEYIQILDLGSIVIKA 350
+++ RL G E +Q L + +K
Sbjct: 287 MSDVEHRLAFGTDEKLQAASLVGVFVKG 314
>gi|301768619|ref|XP_002919725.1| PREDICTED: replication factor C subunit 5-like [Ailuropoda
melanoleuca]
Length = 340
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 135/327 (41%), Positives = 191/327 (58%), Gaps = 29/327 (8%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R + +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 16 RIRNLPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAK 75
Query: 89 QLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD
Sbjct: 76 QLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEAD 128
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL++
Sbjct: 129 AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEH 188
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW 267
+ ++E V ++ LV + GDMRRA+ LQS G + E V TG +P
Sbjct: 189 VIKEEKVDLSEDGMKALVTLASGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP- 242
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAY-SATQLFD----QFHDIVMSASSLSDK------QK 316
LK D +L+ + AY + T+L HDI+ + +
Sbjct: 243 ----LKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTETHLFVHRVDFPSSVR 298
Query: 317 ALILEKLAECNARLQDGASEYIQILDL 343
+L K+A+ RL G +E IQ+ L
Sbjct: 299 VHLLTKMADIEYRLSVGTNEKIQLSSL 325
>gi|392590080|gb|EIW79410.1| DNA replication factor [Coniophora puteana RWD-64-598 SS2]
Length = 345
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 132/327 (40%), Positives = 191/327 (58%), Gaps = 18/327 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV +++ + +++ + LPH LFYGPPGTGKTST++A +++G
Sbjct: 29 LPWVEKYRPVTLDDVKSHKDITTTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG 88
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR++ILELNASDDRGI V+R+++K FA +T + F + +K++ILDEAD MT
Sbjct: 89 SEYRKQILELNASDDRGIDVVREQIKQFA-ETRTLFAKS------YKLIILDEADMMTQQ 141
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF PL + ++ ++ E E
Sbjct: 142 AQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPMAEVEKQIDHVVEAE 201
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKL 271
E L++ S GDMRRA+ LQ+C + I +V TG P+P IE +
Sbjct: 202 DCKVTKDGKEALLKLSKGDMRRALNVLQACH--AAYDSIGETEVYNCTGN-PHPRDIESI 258
Query: 272 LK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
+ D F + I + E A Q + L + + +L+ LA
Sbjct: 259 VNSMLSDEFTTSYQMINQMKTERGLALQDLLSGAFEYVDTLELKPQARVYLLDYLATIEY 318
Query: 329 RLQDGASEYIQILDLGSIVIKANKTAV 355
RL GASE IQ+ S ++ A K AV
Sbjct: 319 RLSTGASEKIQL----SALLGAFKNAV 341
>gi|428174860|gb|EKX43753.1| hypothetical protein GUITHDRAFT_140204 [Guillardia theta CCMP2712]
Length = 331
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 184/314 (58%), Gaps = 18/314 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T+ +V+ ++ V+ L+ ++PH L G PG GKT+ ++A +L G
Sbjct: 12 LPWVEKYRPQTLKEVVGNEDAVARLQAIAKDGNMPHLLLTGSPGIGKTTCVLALARELLG 71
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D ++E +LELNASD+RGI V+R+K+K FAQQ + PP KI+ILDEADSMT
Sbjct: 72 DSFKEGVLELNASDERGIDVVRNKIKMFAQQKVT--------LPPGRHKIIILDEADSMT 123
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
A+Q A+RRTME + +TRF L CN S II+P+ SRC+ RF L++ +L+RLQ ICE
Sbjct: 124 SASQQAMRRTMELYSNTTRFALACNNSSEIIEPIQSRCAILRFAKLSDKELLSRLQDICE 183
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP---- 266
+E V+ LE L+ T+ GDMR+A+ LQS A G GIVN++ + P+P
Sbjct: 184 KEEVLASTDGLEALIFTADGDMRQAVNSLQSTA---NGFGIVNQESVFKVCDQPHPKTAI 240
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
I K + +EDL YSA + + + + +K K L+++
Sbjct: 241 QIVKSCLTGDIKNAHSKLEDLWQRGYSAQDIVQTIFKVTRNM-DMPEKSKLDFLKEIGIY 299
Query: 327 NARLQDGASEYIQI 340
+ R+ +G +Q+
Sbjct: 300 HMRVLEGVDSLVQV 313
>gi|344231516|gb|EGV63398.1| hypothetical protein CANTEDRAFT_98513 [Candida tenuis ATCC 10573]
Length = 331
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 188/322 (58%), Gaps = 32/322 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T+D+V Q E+V ++K + LPH LFYGPPGTGKTST+IA +++G
Sbjct: 8 LPWVEKYRPETLDEVYGQSEIVDTVRKFVQEGKLPHLLFYGPPGTGKTSTIIALAREIYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y+ +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT
Sbjct: 68 PKYKNMVLELNASDDRGIDVVRNQIKDFA-STMQIFSKG------FKLIILDEADAMTSV 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+P+ + + RL+ + +E
Sbjct: 121 AQNALRRIIEKYTKNTRFCILANYSHKLNPALVSRCTRFRFQPIHTDAIRERLKNVVIKE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVLE------------- 258
+ A+E+L+ S GDMRRA+ LQSC A L + ++E+++
Sbjct: 181 KITIKPDAIESLLTLSQGDMRRALNVLQSCKASLDNPDDEIDEEMIYNCIGAPQPKDVET 240
Query: 259 -VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 317
+ ++ + W L +D F+ ++ +LE + +++ L + K
Sbjct: 241 VLDSILKDDWTTAYLTMDKFKRVKGLALIDLLEGFVG----------ILNKYELDKQTKI 290
Query: 318 LILEKLAECNARLQDGASEYIQ 339
IL+ L+E + G ++ I
Sbjct: 291 KILKGLSEVEYGISKGGNDKIN 312
>gi|409728331|ref|ZP_11271198.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|448722058|ref|ZP_21704598.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
gi|445790282|gb|EMA40949.1| replication factor C small subunit [Halococcus hamelinensis 100A6]
Length = 323
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 184/320 (57%), Gaps = 15/320 (4%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
+ + R + W+EKYRP+ + V ++V L+ ++ DLPH LF GP G GKT++
Sbjct: 2 SEAEARGRGEIWIEKYRPQRLSAVAGHADIVGRLESYVAQDDLPHLLFTGPAGVGKTTSA 61
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
+A +++GD +RE LELNASD+RGI V+RD++K FA+ + G++ ++I+ L
Sbjct: 62 MAIAREVYGDDWRENFLELNASDERGIDVVRDRIKNFARASFGGYD--------YRIIFL 113
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD++T AQ+ALRRTME+ +TRF L CNY + II P+ SRC+ FRF PL +++
Sbjct: 114 DEADALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLDGDSVAE 173
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
++ I E+E + ++ LV + GDMR+AI LQ+ A GE + E V +T +
Sbjct: 174 YVRRIAEEEGIEITEDGIDALVYAADGDMRKAINGLQAAATT--GETVDEEAVYAITAAV 231
Query: 264 PNPWIEKLLKV---DSFQVLEKYIEDLILEA-YSATQLFDQFHDIVMSASSLSDKQKALI 319
IE ++ F ++DL+ EA + DQ H S L D+ +
Sbjct: 232 RPEQIETMVTTALDGDFTAARAKLDDLLTEAGLGGGDVIDQLHRSAWS-FDLDDRATVRL 290
Query: 320 LEKLAECNARLQDGASEYIQ 339
LE++ E + R+ GA+E +Q
Sbjct: 291 LERVGETDYRISQGANERLQ 310
>gi|435850632|ref|YP_007312218.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
gi|433661262|gb|AGB48688.1| DNA polymerase III, gamma/tau subunit [Methanomethylovorans
hollandica DSM 15978]
Length = 333
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 188/311 (60%), Gaps = 16/311 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP +DD++ Q E ++ LK + +LPH LF GPPG GKT+T ++ +LF D
Sbjct: 21 WIEKYRPMRLDDIVGQTEAIARLKSYVKSRNLPHLLFSGPPGVGKTATAVSIAKELFADS 80
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE ELNASD+RGI V+R K+K+FA+ + G FKI+ LDEAD++T AQ
Sbjct: 81 WRENFTELNASDERGIDVVRTKIKSFAKTSPIG-------GADFKIIFLDEADALTSDAQ 133
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME+ T + RF L CNY S II+P+ SRC+ +RF+PL+++ + R++++ E +
Sbjct: 134 AALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAVTERVRFVASNEGI 193
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLK 273
+E + + GDMR+AI LQ+ + + + +V++D + ++T I L+
Sbjct: 194 EVATDGMEAIKYVAQGDMRKAINALQAASLV---DNVVHKDTIYKITATARPEQITDLIN 250
Query: 274 V---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+F KY+++L+L + S + Q + + + S +K LI + + E + R
Sbjct: 251 TALSGNFMAARKYLDELLLDQGLSGEDVVGQIYRAMFNISIPQEKMVELI-DVIGEVDFR 309
Query: 330 LQDGASEYIQI 340
+ +GA+E IQ+
Sbjct: 310 IAEGANERIQL 320
>gi|257052996|ref|YP_003130829.1| replication factor C small subunit [Halorhabdus utahensis DSM
12940]
gi|256691759|gb|ACV12096.1| Replication factor C [Halorhabdus utahensis DSM 12940]
Length = 326
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 120/309 (38%), Positives = 183/309 (59%), Gaps = 15/309 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T++D+ + +V L +S DL H LF GP G GKT+ A +L+G+
Sbjct: 15 WIEKYRPQTLEDIAGHEAIVERLGSYVSRNDLSHMLFAGPAGVGKTTAATAIARELYGED 74
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ E LELNASD+RGI V+RD+VK+FA+ + G++ ++I+ LDEAD++T AQ
Sbjct: 75 WEENFLELNASDERGIDVVRDRVKSFARTSFGGYD--------YRIIFLDEADALTADAQ 126
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA+ + +++ I ++E +
Sbjct: 127 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADEAVEAQIRQIAQEEVI 186
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL--L 272
+E LV +GGDMR+AI LQ+ + G+ + E V E+T I ++ L
Sbjct: 187 DVTEDGIEALVYVAGGDMRKAINGLQAAS--MSGDTVNEEAVFEITSTARPEDIREMVDL 244
Query: 273 KVDS-FQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F ++ L+ E + + DQ H V LSD +L+++ E + R+
Sbjct: 245 ALDGDFTAARSRLDTLLTEEGIAGGDIIDQLHRTVWE-FDLSDAAAVRVLDRVGEADYRI 303
Query: 331 QDGASEYIQ 339
+GASE IQ
Sbjct: 304 TEGASERIQ 312
>gi|345790910|ref|XP_534696.3| PREDICTED: replication factor C subunit 5 [Canis lupus familiaris]
Length = 339
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 133/323 (41%), Positives = 188/323 (58%), Gaps = 19/323 (5%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A
Sbjct: 15 KIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILAC 72
Query: 87 CHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDE
Sbjct: 73 AKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDE 125
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL
Sbjct: 126 ADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRL 185
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV--- 262
+++ +E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 186 EHVVGEEKVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTGHPLK 243
Query: 263 --IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
I N ++ +L D +E L+ + + + H + + + +L
Sbjct: 244 SDIAN-ILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIH-LFVHRVDFPSSVRVHLL 301
Query: 321 EKLAECNARLQDGASEYIQILDL 343
K+A+ RL G +E IQ+ L
Sbjct: 302 TKMADIEYRLSVGTNEKIQLSSL 324
>gi|229366198|gb|ACQ58079.1| Replication factor C subunit 5 [Anoplopoma fimbria]
Length = 335
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/318 (40%), Positives = 191/318 (60%), Gaps = 17/318 (5%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+ + +PWVEKYRP+ +DD+I ++++S ++K +S LPH LFYGPPGTG+TST++A
Sbjct: 10 QERNLPWVEKYRPQKLDDLISHKDILSTIQKFISEDKLPHLLFYGPPGTGETSTILACAK 69
Query: 89 QLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QL+ + + +LELNASDDRGI V+R V +FA T + F + FK+VILDEAD
Sbjct: 70 QLYKEKEFTSMVLELNASDDRGIDVVRGPVLSFAS-TRTIFKRG------FKLVILDEAD 122
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
MT AQ ALRR +EK T++TR CLICNY+S II L SRC++FRF PL+ + M+ RL+Y
Sbjct: 123 HMTQDAQNALRRVIEKYTENTRLCLICNYLSKIIPALQSRCTRFRFGPLSPDQMIPRLEY 182
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNP 266
+ +QES+ + ++ +V S GDMRR++ LQS + G V ED V TG
Sbjct: 183 VVQQESIDINPGGMKAIVTLSSGDMRRSLNILQSTSM---AYGKVTEDTVYTCTGHPLRS 239
Query: 267 WIEKL----LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
I + L D ++ ++ L+ + + + H +++ + +L K
Sbjct: 240 DIANILDWSLNKDFTSAYKEILQLKTLKGLALNDILTEVH-LLIHRVDFPPAIRIGLLIK 298
Query: 323 LAECNARLQDGASEYIQI 340
LA+ RL G +E IQ+
Sbjct: 299 LADIEHRLASGTNEKIQL 316
>gi|444317044|ref|XP_004179179.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
gi|387512219|emb|CCH59660.1| hypothetical protein TBLA_0B08450 [Tetrapisispora blattae CBS 6284]
Length = 333
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 130/324 (40%), Positives = 191/324 (58%), Gaps = 18/324 (5%)
Query: 25 SGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
SG RN +PWVEKYRP +D+V Q EVVS +++ +S LPH LFYGPPGTGKTST+
Sbjct: 2 SGNNRNVDNLPWVEKYRPNKLDEVYGQNEVVSTVRRFVSEGKLPHLLFYGPPGTGKTSTI 61
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
+A +++G+ Y +LELNASDDRGI V+R+++K FA T F++ FK++IL
Sbjct: 62 VALAREIYGNNYSNMVLELNASDDRGIDVVRNQIKEFA-STRQIFSKG------FKLIIL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT+AAQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL +M
Sbjct: 115 DEADAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPIESMRQ 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNED-VLEVTG 261
R+ + +E V AL ++ S GDMR+ + +Q+C A E ++E+ V E G
Sbjct: 175 RIDNVIVKEKVKISEDALNATLKLSKGDMRKVLNVIQACQAGQNSNENEIDEELVYECIG 234
Query: 262 VIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQ---LFDQFHDI--VMSASSLSDKQK 316
P P K++ ++S + +E TQ L D I V+ L +++
Sbjct: 235 T-PKPNDIKMI-LNSIMNEDWNTAYFTMERIKVTQGLALVDLIEGIVEVLEGYELKNEET 292
Query: 317 AL-ILEKLAECNARLQDGASEYIQ 339
+ IL +L + + G +E +Q
Sbjct: 293 RISILSRLGDIEYSISHGGNERVQ 316
>gi|18312140|ref|NP_558807.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559513|sp|Q8ZYK4.1|RFCS1_PYRAE RecName: Full=Replication factor C small subunit 1; Short=RFC small
subunit 1; AltName: Full=Clamp loader small subunit 1
gi|18159573|gb|AAL62989.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 329
Score = 226 bits (575), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 177/311 (56%), Gaps = 16/311 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL++I + E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN--EDVLEVTGVIPNPWIEKL- 271
A+ + E S GDMR+AI LQ A +V+ V P IE
Sbjct: 179 ELREDAINMIYELSEGDMRKAINLLQVAA---ATNKVVDANAVASAAIAVRPADIIELFN 235
Query: 272 --LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ D + EK E + L+ + F ++ + D KA I E LA+ + R
Sbjct: 236 LAISGDFVKAREKLRELMYLKGIAGADFIRAFQRELIRM-PIDDDIKAEIAELLADVDYR 294
Query: 330 LQDGASEYIQI 340
L GA E IQ+
Sbjct: 295 LTQGADEEIQL 305
>gi|389594993|ref|XP_003722719.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
gi|323363947|emb|CBZ12953.1| putative replication factor C, subunit 3 [Leishmania major strain
Friedlin]
Length = 364
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/320 (39%), Positives = 184/320 (57%), Gaps = 21/320 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++ V+ ++++S L+ + ++PH L YGPPGTGKT+T+ A + L+G
Sbjct: 17 LPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYG 76
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK----------PCPPFKIV 141
R +LE+NASDDRGI V+R + + FA T+S F+ G P FK+V
Sbjct: 77 KARVRANVLEMNASDDRGIDVVRQQTREFAS-TSSIFSMMGTGSSTGGGSGGPAAKFKLV 135
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEAD M+H AQAALRR +EK T++ RFC++CN+++ II L SRC++FRF P+ +++M
Sbjct: 136 ILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSSM 195
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ RL+Y+ EQE V L S GD+RR + +Q+ A L E I E V VTG
Sbjct: 196 MPRLRYVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASA-LSANE-ITEESVYRVTG 253
Query: 262 VIPNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 316
P P + +L D K E ++ + S L + H ++M A L K
Sbjct: 254 N-PTPADVTAIVSDMLSSDFATSWVKAEESVVQKGISMADLTREIHPVMM-AMDLPQDCK 311
Query: 317 ALILEKLAECNARLQDGASE 336
+L KL++ GA E
Sbjct: 312 CFLLMKLSDLEYYAAGGARE 331
>gi|401429678|ref|XP_003879321.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495571|emb|CBZ30876.1| putative replication factor C, subunit 3 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 364
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/320 (40%), Positives = 184/320 (57%), Gaps = 21/320 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++ V+ ++++S L+ + ++PH L YGPPGTGKT+T+ A + L+G
Sbjct: 17 LPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYG 76
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK----------PCPPFKIV 141
D R +LE+NASDDRGI V+R + + FA T+S F+ G P FK+V
Sbjct: 77 KDRVRANVLEMNASDDRGIDVVRQQTREFAS-TSSIFSMMGSGSSTGSGGGGPAAKFKLV 135
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEAD M++ AQAALRR +EK T++ RFC++CN+++ II L SRC++FRF P+ ++ M
Sbjct: 136 ILDEADQMSYDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAM 195
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ RL+Y+ EQE V L S GD+RR + +QS A L E I E V VTG
Sbjct: 196 MPRLRYVAEQEGVKYTTDGLAAAFRLSRGDLRRCLNTMQSSA-LSANE-ITEESVYRVTG 253
Query: 262 VIPNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 316
P P + +L D K E ++ + S L + H I+M A L K
Sbjct: 254 N-PTPADVTAIVSDMLSSDFATSWIKVEEGVLQKGISMADLTREIHPIMM-AMDLPQDCK 311
Query: 317 ALILEKLAECNARLQDGASE 336
+L KL++ GA E
Sbjct: 312 CFLLMKLSDLEYYAAGGARE 331
>gi|395744928|ref|XP_002823879.2| PREDICTED: replication factor C subunit 5 isoform 3 [Pongo abelii]
Length = 340
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 188/322 (58%), Gaps = 17/322 (5%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K + LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFIIEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI ++R + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV---- 262
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 188 HVVEEEKVDVSEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTGHPLKS 245
Query: 263 -IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
I N ++ +L D E L+ + + + H V S + L++
Sbjct: 246 DIAN-ILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLI- 303
Query: 322 KLAECNARLQDGASEYIQILDL 343
K+A+ RL G +E IQ+ L
Sbjct: 304 KMADIEYRLSVGTNEKIQLSSL 325
>gi|50309079|ref|XP_454545.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643680|emb|CAG99632.1| KLLA0E13201p [Kluyveromyces lactis]
Length = 329
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 105/210 (50%), Positives = 147/210 (70%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW+EKYRP+T+DDV QQ VV+ ++K L LPH LFYGPPGTGKTST++A +++G
Sbjct: 8 LPWIEKYRPETLDDVYGQQNVVNTVRKFLHEGRLPHLLFYGPPGTGKTSTIVALAREIYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT+A
Sbjct: 68 SNYRNMVLELNASDDRGIDVVRNQIKEFA-STRQIFSKG------FKLIILDEADAMTNA 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL+E + R+ + +E
Sbjct: 121 AQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLSEQAIERRIANVLVKE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ D +A L+ S GDMRRA+ LQ+
Sbjct: 181 HLKLDPQAHAALLRLSSGDMRRALNVLQAA 210
>gi|17554730|ref|NP_498521.1| Protein RFC-4 [Caenorhabditis elegans]
gi|1703051|sp|P53016.1|RFC4_CAEEL RecName: Full=Replication factor C subunit 4; AltName:
Full=Activator 1 subunit 4
gi|351049703|emb|CCD63405.1| Protein RFC-4 [Caenorhabditis elegans]
Length = 334
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 191/319 (59%), Gaps = 8/319 (2%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R K + W EKYRPKT+DD+ Q EVV++LK L G DLPH LFYGPPGTGKTS +A C
Sbjct: 11 RPKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCR 70
Query: 89 QLF-GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QLF +++ +R+L+LNASD+RGI V+R K+++F++ + +++ KI+ILDE D
Sbjct: 71 QLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHRED--VLKLKIIILDEVD 128
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQAA+RR +E +K+TRF LICNYVS +I P+ SRC+KFRFK L + RL+
Sbjct: 129 AMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRT 188
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR-LKGGEGIVNEDVLEVT--GVIP 264
IC+ E L+ ++E S GD+RRA+ LQS A LK G+ L + ++
Sbjct: 189 ICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGDDNARNCYLRGSSDSLLI 248
Query: 265 NPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
+ + +L D Q++ + I ++ + + +M ++D+ ++ + +A
Sbjct: 249 SNVCKSILTADVPQIIA--LTKDITKSCTGVAFIRRCFQQLMDEDVINDENIGVMGKLVA 306
Query: 325 ECNARLQDGASEYIQILDL 343
C R+ DG +LD
Sbjct: 307 TCEKRILDGCDLENNLLDF 325
>gi|6324039|ref|NP_014109.1| replication factor C subunit 3 [Saccharomyces cerevisiae S288c]
gi|585844|sp|P38629.1|RFC3_YEAST RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3; AltName: Full=Activator 1 40 kDa subunit
gi|439118|gb|AAA34969.1| replication factor C [Saccharomyces cerevisiae]
gi|841466|gb|AAC49062.1| Rfc3p [Saccharomyces cerevisiae]
gi|1050872|gb|AAC49110.1| replication factor C, 40 kDa subunit [Saccharomyces cerevisiae]
gi|1302375|emb|CAA96207.1| RFC3 [Saccharomyces cerevisiae]
gi|285814375|tpg|DAA10269.1| TPA: replication factor C subunit 3 [Saccharomyces cerevisiae
S288c]
gi|392297062|gb|EIW08163.1| Rfc3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 340
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 201/348 (57%), Gaps = 33/348 (9%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+STS + R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + E + A + L+E S GDMRR + LQSC A L E +++DV+
Sbjct: 174 IERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIY 233
Query: 259 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAY---------SATQLFDQFHDIV--MS 307
P P D VL+ +ED A+ L D IV +
Sbjct: 234 ECCGAPRP-------SDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILE 286
Query: 308 ASSLSDKQ-KALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
L +++ + +L KLA+ + G ++ IQ GS VI A K +
Sbjct: 287 DYELQNEETRVHLLTKLADIEYSISKGGNDQIQ----GSAVIGAIKAS 330
>gi|254567680|ref|XP_002490950.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|238030747|emb|CAY68670.1| Subunit of heteropentameric Replication factor C (RF-C), which is a
DNA binding protein and ATPase t [Komagataella pastoris
GS115]
gi|328352517|emb|CCA38916.1| replication factor C subunit 3/5 [Komagataella pastoris CBS 7435]
Length = 332
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/317 (39%), Positives = 189/317 (59%), Gaps = 16/317 (5%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP ++D V Q + V ++K + LPH LFYGPPGTGKTST++A +
Sbjct: 9 NTNLPWVEKYRPSSLDYVYGQHDTVDTVRKFVQDGRLPHLLFYGPPGTGKTSTIMALAKE 68
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
++G YR +LELNASDDRGI V+RD++ FA T F+ FK++ILDEAD+M
Sbjct: 69 IYGKNYRNMVLELNASDDRGISVVRDQIVNFA-STRQIFSNG------FKLIILDEADAM 121
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+P+++ + R+ +
Sbjct: 122 TNVAQNALRRVIEKFTKNTRFCVLANYAHKLNPALLSRCTRFRFQPISQEAIQLRINDVI 181
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC--ARLKGGEGIVNEDVLEVTGVIPNPW 267
+QE + D AL++L++ S GDMR+A+ LQ+C + I + + E G P+P
Sbjct: 182 KQEGINIDDDALQSLLKLSKGDMRKALNVLQACFTGLDSPSQAITSPMIYECVGA-PDPQ 240
Query: 268 -IEKLLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
IE +L ++++ + L LE Y+ L + F DI + L + IL+
Sbjct: 241 DIEHVLDTIIQENWEAAFTIMNRLKLEKGYALIDLVNGFVDI-LGGYQLEKMCRLTILKG 299
Query: 323 LAECNARLQDGASEYIQ 339
LA+ + G ++ IQ
Sbjct: 300 LADIEYAISRGGNDAIQ 316
>gi|219117762|ref|XP_002179670.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217408723|gb|EEC48656.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 338
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 188/332 (56%), Gaps = 17/332 (5%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
SG+ +PWVEKYRP+ ++D++ Q ++VS + + +LPH L YGPPGTGKTST++
Sbjct: 9 SGRADELQLPWVEKYRPQRLEDLVSQDDIVSSITNLIDSENLPHLLLYGPPGTGKTSTIV 68
Query: 85 AACHQLFGD--MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
AA +++G Y LELNASD RGI V+R+++K FA T FN+ K++I
Sbjct: 69 AAAKRMYGSSSAYSSMTLELNASDARGIDVVRNEIKEFAG-TKQLFNKG------IKLII 121
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK TK+ RFCL+CNYVS II L SRC++FRF PL+ + +
Sbjct: 122 LDEADAMTSDAQFALRRIIEKYTKNARFCLVCNYVSKIIPALQSRCTRFRFAPLSRDQIE 181
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL + E E ++ ++ SGGDMRR + LQS A +V+E + +T
Sbjct: 182 GRLTEVAEAEKCKTTQDGIDAILRLSGGDMRRVLNLLQSTAM---SAEVVDETSVYLTSG 238
Query: 263 IPNP----WIEKLLKVDSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKA 317
P P I L +FQ + I + ++ Y+ + + +M +L
Sbjct: 239 APLPADMDQILDWLMNHNFQTACEQITAMCTMKGYALADVLAELTSKIMCLENLDSVPLG 298
Query: 318 LILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++L+ ++ RL G E IQI L + ++
Sbjct: 299 MLLDGMSNVEHRLAFGPDEKIQIASLVGVFVR 330
>gi|154344961|ref|XP_001568422.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065759|emb|CAM43533.1| putative replication factor C, subunit 3 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 364
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 183/326 (56%), Gaps = 19/326 (5%)
Query: 26 GKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
GK +PWVEKYRP T++ V+ ++++S L+ ++ ++PH L YGPPGTGKT+T+ A
Sbjct: 10 GKVAASHLPWVEKYRPSTLESVVAHEDILSTLRHLMNSGNMPHLLLYGPPGTGKTTTIKA 69
Query: 86 ACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTA---------SGFNQDGKPC 135
+ L+G D R +LE+NASDDRGI V+R + + FA T+ S + G
Sbjct: 70 CAYYLYGKDRVRANVLEMNASDDRGIDVVRQQTREFASTTSIFSVMGSSSSTGSGSGGSA 129
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
FK+VILDEAD M+H AQAALRR +EK T++ RFCL+CN+++ II L SRC++FRF P
Sbjct: 130 VKFKLVILDEADQMSHDAQAALRRVIEKYTRNVRFCLLCNHINKIIPALQSRCTRFRFAP 189
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
+ ++ M+ RL+Y+ E E V L S GD+RR + +Q+ A L E I E
Sbjct: 190 VKKSAMMPRLRYVAEHEGVKYTTDGLAAAYRLSQGDLRRCLNTMQASA-LSANE-ITEES 247
Query: 256 VLEVTGVIPNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS 310
V VTG P P + +L D K E + + S L + H +VM A
Sbjct: 248 VYRVTGN-PTPADVTTIVSHMLSSDFATSWIKTEEAVTQKGISMADLTREIHPVVM-AMD 305
Query: 311 LSDKQKALILEKLAECNARLQDGASE 336
L K +L KL++ GA E
Sbjct: 306 LPQDCKCFLLMKLSDLEYYAAGGARE 331
>gi|151944257|gb|EDN62536.1| replication factor C subunit 3 [Saccharomyces cerevisiae YJM789]
gi|190409258|gb|EDV12523.1| replication factor C subunit 3 [Saccharomyces cerevisiae RM11-1a]
gi|256271294|gb|EEU06366.1| Rfc3p [Saccharomyces cerevisiae JAY291]
gi|259149079|emb|CAY82321.1| Rfc3p [Saccharomyces cerevisiae EC1118]
gi|323331837|gb|EGA73249.1| Rfc3p [Saccharomyces cerevisiae AWRI796]
gi|323335982|gb|EGA77259.1| Rfc3p [Saccharomyces cerevisiae Vin13]
gi|323346957|gb|EGA81235.1| Rfc3p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352828|gb|EGA85130.1| Rfc3p [Saccharomyces cerevisiae VL3]
gi|365763611|gb|EHN05138.1| Rfc3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 340
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 201/348 (57%), Gaps = 33/348 (9%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+STS + R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + E + A + L+E S GDMRR + LQSC A L E +++DV+
Sbjct: 174 IERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIY 233
Query: 259 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAY---------SATQLFDQFHDIV--MS 307
P P D VL+ +ED A+ L D IV +
Sbjct: 234 ECCGAPRP-------SDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILE 286
Query: 308 ASSLSDKQ-KALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
L +++ + +L KLA+ + G ++ IQ GS VI A K +
Sbjct: 287 DYELQNEETRVHLLTKLADIEYSISKGGNDQIQ----GSAVIGAIKAS 330
>gi|323303302|gb|EGA57098.1| Rfc3p [Saccharomyces cerevisiae FostersB]
Length = 340
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 201/348 (57%), Gaps = 33/348 (9%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+STS + R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + E + A + L+E S GDMRR + LQSC A L E +++DV+
Sbjct: 174 IERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIY 233
Query: 259 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAY---------SATQLFDQFHDIV--MS 307
P P D VL+ +ED A+ L D IV +
Sbjct: 234 ECCGAPRP-------SDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILE 286
Query: 308 ASSLSDKQ-KALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
L +++ + +L KLA+ + G ++ IQ GS VI A K +
Sbjct: 287 DYELQNEETRVHLLTKLADIEYSISKGGNDQIQ----GSAVIGAIKAS 330
>gi|358059664|dbj|GAA94596.1| hypothetical protein E5Q_01248 [Mixia osmundae IAM 14324]
Length = 414
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 195/363 (53%), Gaps = 46/363 (12%)
Query: 13 DAPSSSKTSVSTSGKTRNKPV--------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA 64
DAP + GK + +PV PWVEKYRP T+DDV+ +++VS + K +S
Sbjct: 51 DAPPPLAYGID-KGKAKQEPVEAHELDSLPWVEKYRPATLDDVVSHKDIVSTIDKFISLN 109
Query: 65 DLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----------------YRERILELNASDD 107
LPH LFYGPPGTGKTST++A +++G R +LELNASDD
Sbjct: 110 RLPHLLFYGPPGTGKTSTILAVARKIYGGTGNSIRGGVSGKGKEGSSMRNNVLELNASDD 169
Query: 108 RGIQVIRDKVKTFAQQT---ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164
RGI V+RD++K FA +SG+ K++ILDEAD MT AQ ALRR +E+
Sbjct: 170 RGIDVVRDQIKNFASTRMIFSSGY----------KLIILDEADMMTTTAQNALRRVIEQY 219
Query: 165 TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETL 224
TK+ RFC+ICNYV+ II + SRC++FRF PL + R+Q++ + ESV E L
Sbjct: 220 TKNVRFCIICNYVNRIIPAVQSRCTRFRFGPLETTEVDRRIQHVVDAESVNLTQDGREAL 279
Query: 225 VETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKL---LKVDSFQVL 280
++ S GDMRRA+ LQ+C +V+E + P+P I+++ + D FQ
Sbjct: 280 LKLSKGDMRRALNVLQAC---HSAYPVVDEGAIYACTGNPHPADIDEMVTSMMSDEFQTA 336
Query: 281 EKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
+ + + + A Q +S + + +L+ LA+ RL G SE +Q+
Sbjct: 337 YQRVVAIKTDKGLALQDIIAGLGEALSGLDMPPHARIYLLDHLAQIEHRLSTGGSEKLQM 396
Query: 341 LDL 343
L
Sbjct: 397 TAL 399
>gi|367014065|ref|XP_003681532.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
gi|359749193|emb|CCE92321.1| hypothetical protein TDEL_0E00780 [Torulaspora delbrueckii]
Length = 336
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 132/334 (39%), Positives = 189/334 (56%), Gaps = 34/334 (10%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP T+DDV Q EVV +++ + LPH LFYGPPGTGKTST++A +
Sbjct: 8 NDGLPWVEKYRPATLDDVYGQNEVVGTVRRFIEEGQLPHLLFYGPPGTGKTSTVVALARE 67
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
++G Y +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+M
Sbjct: 68 IYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKLIILDEADAM 120
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+AAQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL + R+ +
Sbjct: 121 TNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTEALERRMNKVL 180
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG--GEGIVNEDVLEVTGVIPNP 266
E + A E L++ S GDMRR + LQ+C A L E I ++ + + G P P
Sbjct: 181 SNEHLKMTTSAKEALLKLSRGDMRRVLNVLQACKATLDKPLEEEITDDTIYDCCGA-PRP 239
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAY------------SATQLFDQFHDIVMSASSLSDK 314
D +LE ++D AY + L + F DI+ S S +
Sbjct: 240 -------ADLETILESILKDDWTTAYYTLNRVRGAKGLALIDLIEGFVDILESYELKSQE 292
Query: 315 QKALILEKLAECNARLQDGASEYIQILDLGSIVI 348
+ +L +L++ + G ++ IQ GS VI
Sbjct: 293 ARISMLTQLSDIEYAISRGGNDRIQ----GSAVI 322
>gi|260791339|ref|XP_002590697.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
gi|229275893|gb|EEN46708.1| hypothetical protein BRAFLDRAFT_125553 [Branchiostoma floridae]
Length = 329
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/325 (38%), Positives = 193/325 (59%), Gaps = 23/325 (7%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
SG ++ +PWVEKYRPK + ++I Q+++S +++ L LPH LFYGPPGTGKTST++
Sbjct: 2 SGGGEHRNLPWVEKYRPKEMTELISHQDIISTIQRFLDEDRLPHLLFYGPPGTGKTSTIL 61
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A +L+ D + +LELNASDDRGI ++R V FA T + F + FK+VIL
Sbjct: 62 ACARRLYADREFNSMVLELNASDDRGIGIVRGPVLQFAS-TRTIFKRG------FKLVIL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR MEK T++TRFCLICNY+S II + SRC++FRF PL + ML
Sbjct: 115 DEADAMTGDAQNALRRVMEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLGVDQMLP 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGV 262
RL+++ ++E V + +++ + GDMRR + LQS + +V+ED V VTG
Sbjct: 175 RLEHVIQEEKVDVTDDGKKAILQLANGDMRRVLNILQSTSM---AHDVVDEDNVYLVTG- 230
Query: 263 IPNPWIEKLLKVDSFQVLEKY-------IEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 315
P + + ++ + E + + +L+ + + + H + +
Sbjct: 231 --QPLRSDIANIVNWMLNENFTTAYNNIFQLKVLKGLALQDILTEVH-LFVHRIDFPMAV 287
Query: 316 KALILEKLAECNARLQDGASEYIQI 340
K ++L+K+A+ RL G +E +Q+
Sbjct: 288 KMVLLQKMADVEYRLSAGTNEKLQL 312
>gi|352683023|ref|YP_004893547.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
gi|350275822|emb|CCC82469.1| replication factor C small subunit [Thermoproteus tenax Kra 1]
Length = 328
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 181/313 (57%), Gaps = 20/313 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK+ ++++ +E+ + L + + ++PH LFYGPPGTGKT+T + +L+G+
Sbjct: 8 WFEKYRPKSFAEIVDLEEIKARLAEFIKAGNMPHLLFYGPPGTGKTTTALVLARELYGER 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ +G PFK+V+LDEAD+MT AQ
Sbjct: 68 WRENTLELNASDERGINVIRERVKEFARTAPAG-------GAPFKLVVLDEADNMTSDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME +TRF L+ NYVS II P+ SRC+ FRF P+ + M RLQYI QE +
Sbjct: 121 QALRRIMEMYAATTRFVLLANYVSRIIDPILSRCAVFRFPPMPKPLMAQRLQYIASQERI 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
++ + E S GDMRRAI LQ A G+V+++ + P ++L++
Sbjct: 181 KLTEDGIDAIYEISQGDMRRAINLLQMAA---ASAGVVDKESVAAVASAAKP--SEILEI 235
Query: 275 -------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
D + E+ + + + + + + + ++ KA + E LA+ +
Sbjct: 236 FNLAFSGDVEKARERLRDLMYMRGIAGIDILKALQR-ELPRLQIDEETKAAVAELLADVD 294
Query: 328 ARLQDGASEYIQI 340
RL +G+ E +Q+
Sbjct: 295 LRLVEGSDEELQL 307
>gi|146101518|ref|XP_001469135.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|398023497|ref|XP_003864910.1| replication factor C, subunit 3, putative [Leishmania donovani]
gi|134073504|emb|CAM72235.1| putative replication factor C, subunit 3 [Leishmania infantum
JPCM5]
gi|322503146|emb|CBZ38230.1| replication factor C, subunit 3, putative [Leishmania donovani]
Length = 364
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 126/320 (39%), Positives = 184/320 (57%), Gaps = 21/320 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++ V+ ++++S L+ + ++PH L YGPPGTGKT+T+ A + L+G
Sbjct: 17 LPWVEKYRPSTLESVVAHEDILSTLRHLMDSGNMPHLLLYGPPGTGKTTTIKACAYYLYG 76
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK----------PCPPFKIV 141
D R +LE+NASDDRGI V+R + + FA T+S F+ G P FK+V
Sbjct: 77 KDRVRANVLEMNASDDRGIDVVRQQTREFAS-TSSIFSMMGSGSSTGGGSGGPAAKFKLV 135
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEAD M+H AQAALRR +EK T++ RFC++CN+++ II L SRC++FRF P+ ++ M
Sbjct: 136 ILDEADQMSHDAQAALRRVIEKYTRNVRFCILCNHINKIIPALQSRCTRFRFAPVKKSAM 195
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ RL+++ EQE V L S GD+RR + +Q+ A L E + E V VTG
Sbjct: 196 MPRLRFVAEQEGVKYTTDGLAAAFRLSHGDLRRCLNTMQASA-LSANE-VTEESVYRVTG 253
Query: 262 VIPNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 316
P P + +L D K E ++ + S L + H ++M A L K
Sbjct: 254 N-PTPADVTAIVSDMLSSDFATSWIKVEESVVQKGISIADLTREIHPVMM-AMDLPQDCK 311
Query: 317 ALILEKLAECNARLQDGASE 336
+L KL++ GA E
Sbjct: 312 CFLLMKLSDLEYYAAGGARE 331
>gi|399575998|ref|ZP_10769755.1| replication factor c small subunit [Halogranum salarium B-1]
gi|399238709|gb|EJN59636.1| replication factor c small subunit [Halogranum salarium B-1]
Length = 323
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 116/311 (37%), Positives = 183/311 (58%), Gaps = 17/311 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV Q+++V L+ ++ DLPH LF GP G GKT+ A +++GD
Sbjct: 14 WIEKYRPQTLDDVYGQEDIVDRLESYIAQHDLPHLLFAGPAGIGKTTCATAIAREVYGDD 73
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R LELNASD+RGI V+RD++K FA+ + G + ++I+ LDEADS+T AQ
Sbjct: 74 WRGNFLELNASDERGIDVVRDRIKNFARASFGGHD--------YRIIFLDEADSLTSDAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL+++ + +++ I ++E +
Sbjct: 126 SALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFAPLSDDAVAGQIRKIADREGI 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIE 269
+ L+ LV + GDMRRAI LQ+ A G+V+E+ + + P +
Sbjct: 186 EMTDEGLDALVYAADGDMRRAINSLQAAATTG---GVVDEEAVYLITSTARPEEIESMVT 242
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
++ D Q K L + + DQ H L ++ ++E++ E + R
Sbjct: 243 AAIEGDFAQARSKLDTLLTDTGMAGGDIIDQLHRGAWD-FGLDQRETVRLMERIGEADYR 301
Query: 330 LQDGASEYIQI 340
+ +GA+E +Q+
Sbjct: 302 ITEGANEQVQL 312
>gi|47115239|emb|CAG28579.1| RFC5 [Homo sapiens]
Length = 340
Score = 225 bits (574), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 136/328 (41%), Positives = 191/328 (58%), Gaps = 29/328 (8%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI +IR + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRGVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG +P
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP 242
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAY-SATQLFD----QFHDIV------MSASSLSDKQ 315
LK D +L+ + AY + T+L HDI+ +
Sbjct: 243 -----LKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSV 297
Query: 316 KALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G +E IQ+ L
Sbjct: 298 RIHLLTKMADIEYRLSVGTNEKIQLSSL 325
>gi|449017476|dbj|BAM80878.1| replication factor C subunit 4 [Cyanidioschyzon merolae strain 10D]
Length = 359
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 138/339 (40%), Positives = 197/339 (58%), Gaps = 35/339 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSG----------ADLPHFLFYGPPGTGKTSTM 83
PWVEKYRP+ +DDV +Q E + LK+ L G A LPH LFYGPPGTGKT+T
Sbjct: 11 PWVEKYRPRRLDDVTQQHETIRALKQLLYGSGGSSLTEKVASLPHLLFYGPPGTGKTTTA 70
Query: 84 IAACHQLFGDM-----YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPF 138
+A C +LF ++ + R+LELNASD+RGI+V+R+K+K FAQ + + D + P F
Sbjct: 71 LALCRELFQNITNRETLQNRVLELNASDERGIRVVREKIKRFAQSSIEE-SVDAQ-VPGF 128
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
KIVILDEAD++T AQ ALRRT+E +++TRF LICNY+S +I PL SRC+KFRFK L +
Sbjct: 129 KIVILDEADAITADAQTALRRTIEVHSRTTRFVLICNYLSRVIPPLASRCAKFRFKALED 188
Query: 199 NTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRAITCLQSCA----RLKGGEGIVN 253
++ RL++I E + +A L + + GD+RRA+ LQSCA G + ++
Sbjct: 189 GAVIARLEHIARTEGMGPLPPEASRLLAKAAAGDLRRAVNLLQSCADWARSADGSQRVLE 248
Query: 254 -EDVLEVTGVIPNPWIEKLLKV---------DSFQVLE-KYIEDLILEAYSATQLFDQFH 302
E V E ++P +E+ + F+VL Y D +L L D
Sbjct: 249 PEMVSEAACMVPASVVERFYDICVSRNEPVTACFEVLRGGYPVDELLRQTLELLLLDS-- 306
Query: 303 DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQIL 341
+ ++D Q++ I +A L DGA+E +Q+L
Sbjct: 307 GTPPAQVQMNDLQRSAIALHMACAEKYLCDGATEAVQLL 345
>gi|145592047|ref|YP_001154049.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
gi|158514167|sp|A4WLY0.1|RFCS2_PYRAR RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|145283815|gb|ABP51397.1| replication factor C small subunit [Pyrobaculum arsenaticum DSM
13514]
Length = 322
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 155/244 (63%), Gaps = 10/244 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + G ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NY+S II+P+ SR RF PL + + RL+YI + E V
Sbjct: 119 QALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
ALE + E + GDMRRAI LQ A G+ I E V + G++ + + L
Sbjct: 179 KISDDALEAIYEFTQGDMRRAINALQIAA--TTGKEITEETVAKALGMVSPRLLRETLN- 235
Query: 275 DSFQ 278
D+F+
Sbjct: 236 DAFR 239
>gi|426247314|ref|XP_004017431.1| PREDICTED: replication factor C subunit 5 isoform 2 [Ovis aries]
Length = 316
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/315 (41%), Positives = 184/315 (58%), Gaps = 18/315 (5%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+ K + K RN +PWVEKYRP+T+DD+I Q+++S ++K +S LPH L YGPP
Sbjct: 4 SAHKQQQPEAAKIRN--LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPP 61
Query: 76 GTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
GTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 62 GTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG--- 117
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF
Sbjct: 118 ---FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 174
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL M+ RL+++ E+E V ++ L+ S GDMRRA+ LQS G + E
Sbjct: 175 PLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEE 232
Query: 255 DVLEVTGV-----IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 309
V TG I N ++ +L D +E L+ + + + H V +
Sbjct: 233 TVYTCTGHPLKSDIAN-ILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRGN 291
Query: 310 SLSDKQKALILEKLA 324
S S + L + + A
Sbjct: 292 SCSSPVRKLCIRQHA 306
>gi|379005452|ref|YP_005261124.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375160905|gb|AFA40517.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 329
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 124/307 (40%), Positives = 177/307 (57%), Gaps = 16/307 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+ D+V++ +EV + L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRVFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ M RL++I + E +
Sbjct: 119 QALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRGLMAERLRHIAKSEGI 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL--EVTGVIPNPWIEKL- 271
A++ + E S GDMR+AI LQ A +V+ + + T + P IE
Sbjct: 179 ELRDDAIDLIYEVSEGDMRKAINLLQVAA---ATSNVVDANAVASATTMIRPADVIELFN 235
Query: 272 --LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
L D + EK E + ++ + F ++ L D+ KA I E LA+ + R
Sbjct: 236 LALNGDVAKAREKLRELMYVKGIAGIDFIRAFQRELIRM-PLDDEVKAEIAELLADVDYR 294
Query: 330 LQDGASE 336
L G+ E
Sbjct: 295 LTQGSDE 301
>gi|395326617|gb|EJF59024.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 354
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 150/210 (71%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV+ ++ S ++K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 35 LPWVEKYRPVTLDDVVSHHDITSTIEKFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG 94
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR++ILELNASDDRGI+V+R+++K FA +T + F++ +K++ILDEAD MT A
Sbjct: 95 TEYRKQILELNASDDRGIEVVREQIKNFA-ETRTLFSKG------YKLIILDEADMMTTA 147
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ+ALRR +E+ TK+ RFC+ICNYV+ II + SRC++FRF PL + R+ + + E
Sbjct: 148 AQSALRRVIEQYTKNVRFCIICNYVNKIIPAIQSRCTRFRFSPLPIPEVEKRVNNVIDAE 207
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
V + + L++ S GDMRRA+ LQ+C
Sbjct: 208 GVKITAEGKQALLKLSKGDMRRALNVLQAC 237
>gi|119873156|ref|YP_931163.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
gi|150415671|sp|A1RV38.1|RFCS2_PYRIL RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|119674564|gb|ABL88820.1| replication factor C small subunit [Pyrobaculum islandicum DSM
4184]
Length = 320
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 147/223 (65%), Gaps = 10/223 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV S L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NY+S II+P+ SR RF PL + +++RL+YI E E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
ALET+ E + GDMR+AI LQ A E + EDV+
Sbjct: 179 KISDDALETIYEFTQGDMRKAINALQIAA---ATEKEITEDVV 218
>gi|448732321|ref|ZP_21714602.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
gi|445804894|gb|EMA55124.1| replication factor C small subunit [Halococcus salifodinae DSM
8989]
Length = 325
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 117/306 (38%), Positives = 183/306 (59%), Gaps = 15/306 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+ +V+ + +V L+ ++ DLPH LF GP G GKT++ +A +++GD
Sbjct: 15 WIEKYRPETLANVVGHENIVGRLESYVAQNDLPHLLFSGPAGVGKTTSAMAIAREVYGDD 74
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G++ ++I+ LDEAD++T AQ
Sbjct: 75 WRENFLELNASDERGIDVVRDRIKDFARTSFGGYD--------YRIIFLDEADALTSDAQ 126
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ +TRF L CNY S II P+ SRC+ FRF PLAE + ++ + E+E +
Sbjct: 127 SALRRTMEQFANNTRFILSCNYSSQIIDPIQSRCAVFRFGPLAEEAVGEYVRQVAEREGI 186
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
++ LV + GDMR+A+ LQ+ A +G + +E V +T IE +++
Sbjct: 187 EVTDDGVDALVYAADGDMRKALNGLQAAATTEG--AVDDEAVYGITATARPEEIEAMVER 244
Query: 274 -VDS-FQVLEKYIEDLILEA-YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F ++DL+ +A + DQ H S L D +LE++ E + R+
Sbjct: 245 ALDGDFTAARAKLDDLLTDAGLGGGDVIDQLHRSAWS-FDLDDAATVRLLERVGETDYRI 303
Query: 331 QDGASE 336
GA+E
Sbjct: 304 TQGANE 309
>gi|115496354|ref|NP_001068826.1| replication factor C subunit 5 [Bos taurus]
gi|79160183|gb|AAI08106.1| Replication factor C (activator 1) 5, 36.5kDa [Bos taurus]
gi|296478479|tpg|DAA20594.1| TPA: replication factor C 5 [Bos taurus]
Length = 316
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/247 (48%), Positives = 160/247 (64%), Gaps = 12/247 (4%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+ K + K RN +PWVEKYRP+T+DD+I Q+++S ++K +S LPH L YGPP
Sbjct: 4 SAHKQQQPEAAKIRN--LPWVEKYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLYGPP 61
Query: 76 GTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
GTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 62 GTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG--- 117
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF
Sbjct: 118 ---FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 174
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL M+ RL+++ E+E V ++ L+ S GDMRRA+ LQS G + E
Sbjct: 175 PLTPELMVPRLEHVVEEEKVDISEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEE 232
Query: 255 DVLEVTG 261
V TG
Sbjct: 233 TVYTCTG 239
>gi|386002033|ref|YP_005920332.1| replication factor C small subunit [Methanosaeta harundinacea 6Ac]
gi|357210089|gb|AET64709.1| Replication factor C small subunit [Methanosaeta harundinacea 6Ac]
Length = 368
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/313 (37%), Positives = 186/313 (59%), Gaps = 16/313 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP ++DDV+ Q+E+V LK + ++PH LF GPPG GKT+ I+ +LFG+
Sbjct: 51 WIEKYRPMSLDDVVGQEEIVKRLKSYVRSRNVPHLLFSGPPGVGKTAAAISMVRELFGEE 110
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R +ELNASD+RGI V+R KVK FA+ G + FK++ LDEAD++T+ AQ
Sbjct: 111 WRGNFIELNASDERGIDVVRHKVKDFARIAPLGNAE-------FKVIFLDEADALTNDAQ 163
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + RF L CNY S II+P+ SRC+ +RF+ L+E + R++ I E E V
Sbjct: 164 SALRRTMERYSSICRFVLSCNYSSKIIEPIQSRCAVYRFRSLSEEAVSERMKTIAEAEGV 223
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
+ + +V + GDMR+AI LQ+ + ++ E + E + ++T I L+K
Sbjct: 224 KVTPEGMRAIVYVARGDMRKAINALQAASLME--ESVTEETIYQITATARPEQIRDLMKT 281
Query: 274 --VDSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMS---ASSLSDKQKALILEKLAECN 327
+F ++DL+L + S + Q H +S + LS +++++ E +
Sbjct: 282 ALAGNFTQARSLLDDLLLVQGLSGEDVIIQIHRQTLSLLDSHELSGPTLVRLMDRIGEID 341
Query: 328 ARLQDGASEYIQI 340
R+ +GA+E IQ+
Sbjct: 342 FRMTEGANERIQL 354
>gi|169849253|ref|XP_001831330.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
gi|116507598|gb|EAU90493.1| DNA replication factor [Coprinopsis cinerea okayama7#130]
Length = 347
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/329 (38%), Positives = 195/329 (59%), Gaps = 38/329 (11%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++DV+ Q++ + + + + LPH LFYGPPGTGKTST++A +++G
Sbjct: 28 LPWVEKYRPVSLEDVVSHQDITTTIDRFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYG 87
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y+++ILELNASDDRGI V+R++VK FA +T + F++ +K++ILDEAD MT
Sbjct: 88 SDYKKQILELNASDDRGIDVVREQVKQFA-ETRTLFSKG------YKLIILDEADMMTQQ 140
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF PL + ++ + E E
Sbjct: 141 AQAALRRVIEQYTKNVRFCIICNYVNKIAPAIQSRCTRFRFSPLPIAEVEKQVNRVVEAE 200
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPNPW-IEK 270
+V + + L++ S GDMRRA+ LQ+C +++E +V TG P+P IE
Sbjct: 201 NVQLTPEGKQALLKLSKGDMRRALNVLQAC---HAAYDVISESEVYNCTGH-PHPQDIEA 256
Query: 271 LLK-------VDSFQVLEKY-------IEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 316
++ S+Q++ K ++DLI AY + + + +
Sbjct: 257 IVNSMLSDEFTTSYQMISKLKTERGLALQDLIAGAYEYLETIE-----------IKPNAR 305
Query: 317 ALILEKLAECNARLQDGASEYIQILDLGS 345
+L+ LA RL G +E +Q+ L S
Sbjct: 306 VYVLDLLATTEHRLSTGGNEKMQLTALLS 334
>gi|443926001|gb|ELU44750.1| replication factor C [Rhizoctonia solani AG-1 IA]
Length = 1949
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/307 (42%), Positives = 186/307 (60%), Gaps = 26/307 (8%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
LFYGPPGTGKTST++A QLFG +++R R+LELNASD+RGI ++R+K+K FA+QT
Sbjct: 1 MLFYGPPGTGKTSTILALSRQLFGPELFRTRVLELNASDERGISIVREKIKNFARQTPRA 60
Query: 128 FNQDGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS-C------ 179
+ K PCPP+KI+ILDEADSMT AQAALRR ME K TRFCL+CNYV+ C
Sbjct: 61 AEANSKYPCPPYKIIILDEADSMTQDAQAALRRIMENYAKITRFCLVCNYVTRCVELNLT 120
Query: 180 -----------IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETS 228
II+PL SRCSKFRF PL ++ +RL++I + E++ +A+ L+ TS
Sbjct: 121 GLFPSKYLVNRIIEPLASRCSKFRFHPLDVSSTRSRLEHIVKLENIDISPEAVTALISTS 180
Query: 229 GGDMRRAITCLQSCARLKGGE----GIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYI 284
GD+RR+IT LQS ARL + I D+ E+ GV+P+ + + ++ ++ +
Sbjct: 181 DGDLRRSITYLQSAARLSASQEPSPSISASDIQEIAGVVPDAVMNRFSSAVGIELPDEGM 240
Query: 285 EDLILEAYSATQLFDQFHDIVMSASSLSD-KQKALILEKLAECNARLQDGASEYIQILDL 343
D+ A + ++ + I+ S++ + A + L DGA E +Q+L++
Sbjct: 241 -DIDRVAKDIDGIRNEVNRIMQEGFSVAQLLSQTACAAVFAAADKALCDGADEELQLLEI 299
Query: 344 GSIVIKA 350
G V KA
Sbjct: 300 GLGVWKA 306
>gi|355716188|gb|AES05532.1| replication factor C 5, 36.5kDa [Mustela putorius furo]
Length = 337
Score = 225 bits (573), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 185/317 (58%), Gaps = 19/317 (5%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+ K RN +PWVEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++
Sbjct: 34 AAKIRN--LPWVEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTIL 91
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ D + +LELNASDDRGI+++R + +FA T + F + FK+VIL
Sbjct: 92 ACAKQLYKDKEFGSMVLELNASDDRGIEIVRGPILSFAS-TRTIFKKG------FKLVIL 144
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+
Sbjct: 145 DEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVP 204
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV- 262
RL+++ E+E V ++ LV S GDMRRA+ LQS G + E V TG
Sbjct: 205 RLEHVIEEEKVDLSEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTGHP 262
Query: 263 ----IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
I N ++ +L D +E L+ + + + H V +
Sbjct: 263 LKSDIAN-ILDWMLNQDFTTAYRNIMELKTLKGLALHDILTEIHLFVHRV-DFPSSVRVH 320
Query: 319 ILEKLAECNARLQDGAS 335
+L K+A+ RL G +
Sbjct: 321 LLAKMADIEYRLSVGTN 337
>gi|429329431|gb|AFZ81190.1| replication factor C subunit 3, putative [Babesia equi]
Length = 345
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 189/320 (59%), Gaps = 9/320 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T +D+I ++++S L LPH LF+GPPGTGKTST++A L+G+
Sbjct: 8 PWVEKYRPETFEDIISHEDIMSTLMIFAEKGQLPHLLFHGPPGTGKTSTIMAISRYLYGN 67
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN---QDGKPCPPFKIVILDEADSMT 150
+LELNASD+RGI +R+++K F++ T + N QD K++ILDEAD MT
Sbjct: 68 QKNGFVLELNASDERGIDTVREQIKAFSETTNTFSNTSAQDSNIKTTLKLIILDEADQMT 127
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
+AAQ ALRR ME + + RFCLICN+++ II P+ SRC+ FRF+PL + + R++ I E
Sbjct: 128 NAAQNALRRIMEIYSSNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPDFVRKRIRDIAE 187
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP-NPWIE 269
E++ L+TL++ GDMRR + CLQ A +++ +++ T +P N IE
Sbjct: 188 MENLKLSDCGLDTLIQIGQGDMRRVLNCLQVTAMSYSKGNVIDANLILTTSGMPQNSEIE 247
Query: 270 KLLKVDSFQVLEKYIEDL----ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
LL+ ++ +++L L+ YS + + ++ + LI+ +LA+
Sbjct: 248 HLLQTLMQCSFKESVDELNELHHLKGYSVEDIVKGLYKAILKIDWPNVPIIQLIM-RLAD 306
Query: 326 CNARLQDGASEYIQILDLGS 345
RL GA+ IQI + S
Sbjct: 307 IEERLSAGATASIQIASIVS 326
>gi|68067050|ref|XP_675496.1| replication factor C3 [Plasmodium berghei strain ANKA]
gi|56494714|emb|CAH95400.1| replication factor C3, putative [Plasmodium berghei]
Length = 329
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 126/322 (39%), Positives = 189/322 (58%), Gaps = 16/322 (4%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
VEKYRP ++D+I ++V+S ++K + +LPH L +GPPGTGKTST++A C +L+G+
Sbjct: 1 VEKYRPSVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGESR 60
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
+LELNASDDRGI V+R+++KTFA ++ + +N + K++ILDEAD MT AQ
Sbjct: 61 SSFVLELNASDDRGITVVREQIKTFA-ESKNHYNICER--TSLKLIILDEADHMTFPAQN 117
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
A+RR ME K+ RFCLICNYV+ I + SRC+ FRF PL E ML + I + E+V
Sbjct: 118 AMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRFSPLKEEYMLNKALDIAKSENVN 177
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEK 270
+E+L+ GDMRR + CLQ + L +++E+V+ T IP P +E
Sbjct: 178 LTKNGVESLIRVGRGDMRRILNCLQVVS-LSHKNMVIDENVILSTLDIPLPTEIKFILEH 236
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
L K +S++++ K ED + YS + ++ V++ D L+L+ E
Sbjct: 237 LTKSTIKESYEIITKLQED---KGYSIKDIMICLYETVLTY-DYPDSAICLLLKNFGEIE 292
Query: 328 ARLQDGASEYIQILDLGSIVIK 349
R G +E I + L S I+
Sbjct: 293 ERCASGTTEQITLSSLISAFIE 314
>gi|448376175|ref|ZP_21559459.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
gi|445658193|gb|ELZ11016.1| replication factor C small subunit [Halovivax asiaticus JCM 14624]
Length = 329
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 186/321 (57%), Gaps = 18/321 (5%)
Query: 27 KTRNKPVP---WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
+T + P P W+EKYRP+++DDV + +V L+K + DLPH +F GP G GKT++
Sbjct: 7 ETESSPDPTGIWIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASA 66
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A +L+G+ +RE LELNASD+RGI V+RD++K FA+ + G ++I+ L
Sbjct: 67 GAIARELYGEDWREHFLELNASDERGIDVVRDRIKNFARSSFGGVE--------YRIIFL 118
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L++ +
Sbjct: 119 DEADALTSDAQSALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEA 178
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
+ + I E E + ++ LV + GDMR+AI LQ+ A + GE + E V +T
Sbjct: 179 QTREIAETEGISLTDDGVDALVYAAAGDMRKAINGLQAAAVM--GEEVDEEAVFAITSTA 236
Query: 264 PNPWIEKLLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI 319
+E+++ F +EDL+ + + + DQ H L + + +
Sbjct: 237 RPEEVERMVDQAIGGDFTAARATLEDLLTDRGLAGGDVIDQLHRSAWE-FDLGEHETVRL 295
Query: 320 LEKLAECNARLQDGASEYIQI 340
LE+L E + R+ +GA+E +Q+
Sbjct: 296 LERLGEVDYRITEGANERLQL 316
>gi|291238303|ref|XP_002739068.1| PREDICTED: replication factor C 5-like [Saccoglossus kowalevskii]
Length = 331
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 192/326 (58%), Gaps = 24/326 (7%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N+ +PWVEKYRP ++++I +++S + + + LPH LFYGPPGTGKTST++A Q
Sbjct: 7 NRNLPWVEKYRPNKLEELISHADILSTIDRFIKEDRLPHLLFYGPPGTGKTSTILAVAKQ 66
Query: 90 LFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
L+ + +LELNASDDRGI ++R V +FA T + F FKIVILDEAD+
Sbjct: 67 LYSPKEFNSMVLELNASDDRGIGIVRGPVLSFAS-TRTIFKSG------FKIVILDEADA 119
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+ AQ ALRR +EK T++TRFCLICNY+S II + SRC++FRF PL M+ RL+++
Sbjct: 120 MTNDAQNALRRVIEKFTENTRFCLICNYLSKIIPAIQSRCTRFRFGPLDNQQMVPRLEHV 179
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
+QE V + LV + GDMR+++ LQS + +VNE + V + +P
Sbjct: 180 IQQERVDVTEDGMNALVTLANGDMRKSLNILQSTSM---AYDVVNE--VNVYTCVGHPLK 234
Query: 269 EKLLKVDSFQVLEKY------IEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
E + + ++ + E + I DL L+ + + + H + L K + +L+
Sbjct: 235 EDISNIVNWMLNEDFTTAYNNILDLKTLKGLALQDILTEVHKFIHKV-ELPTKVRIKLLD 293
Query: 322 KLAECNARLQDGASEYIQILDLGSIV 347
K+AE L G +E IQ LGS++
Sbjct: 294 KMAEIEYNLTAGTNEKIQ---LGSLI 316
>gi|254168320|ref|ZP_04875166.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|254169364|ref|ZP_04876193.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289595866|ref|YP_003482562.1| Replication factor C [Aciduliprofundum boonei T469]
gi|197621683|gb|EDY34269.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|197622829|gb|EDY35398.1| Replication factor C family [Aciduliprofundum boonei T469]
gi|289533653|gb|ADD08000.1| Replication factor C [Aciduliprofundum boonei T469]
Length = 317
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 129/312 (41%), Positives = 180/312 (57%), Gaps = 18/312 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRPK++D+V+ Q E+V LK + +PH LF GP GTGKT+ IA +LFG+
Sbjct: 5 WVEKYRPKSLDEVVGQDEIVDRLKSYVKAKTMPHLLFAGPAGTGKTTCAIALARELFGEN 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R ELNASD+RGI ++R K+K +A+ A N G FKI+ LDEAD++T AQ
Sbjct: 65 WRASFHELNASDERGIGIVRTKIKEYARTAAP--NDVG-----FKIIFLDEADALTPDAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +++ RF L CNY S II+P+ SRC+ FRF PL + RL+YI + E
Sbjct: 118 AALRRTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKSEDIKKRLKYIADSEGK 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKG--GEGIVNEDVLEVTGVIPNPWIEKLL 272
AL +V SGGDMR+AI LQ A + EG+ V + TG+ +E +L
Sbjct: 178 KITEDALNAIVYISGGDMRKAINILQMSAAISDTIDEGV----VYKATGLAKREDVEDVL 233
Query: 273 KV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
K D + K + L+ S + Q H ++ + D+ K +L+K E
Sbjct: 234 KKALAGDFIEARNKLNKLLVELGLSGEDVIKQIHRVIYDL-PIDDRLKVELLDKTGEIEF 292
Query: 329 RLQDGASEYIQI 340
R+ +GA+E IQ+
Sbjct: 293 RIVEGANERIQL 304
>gi|41614964|ref|NP_963462.1| replication factor C small subunit [Nanoarchaeum equitans Kin4-M]
gi|42559422|sp|P60374.1|RFCS_NANEQ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|40068688|gb|AAR39023.1| NEQ170 [Nanoarchaeum equitans Kin4-M]
Length = 322
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 129/321 (40%), Positives = 185/321 (57%), Gaps = 34/321 (10%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK IDD+I Q+E+ LK + ++PH LF GPPGTGKT+ +A H+L+GD
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDA 63
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR KVK FA+ G PFKIV LDEAD++T AQ
Sbjct: 64 WRENFLELNASDERGIDVIRHKVKEFARAKPIG-------DVPFKIVFLDEADALTRDAQ 116
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR MEK ++STRF L CNY S II+P+ SR + F+FKPL + + I + E +
Sbjct: 117 QALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGL 176
Query: 215 MCDF--KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+ + + + L + + GD+R+AI LQ+ A + + I + + E+ I K
Sbjct: 177 ILENEDEIINALYDIAEGDLRKAINILQAAAMM--SKTITVDRLYEIAS------IAKPK 228
Query: 273 KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS-------------LSDKQKALI 319
++D +VL K ++ LEA S L D MS +SD++K +I
Sbjct: 229 EID--EVLNKAMQGNFLEARS--MLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMI 284
Query: 320 LEKLAECNARLQDGASEYIQI 340
L+K+ + R+ +GA + +Q+
Sbjct: 285 LDKIGDIEFRIVEGADDLVQL 305
>gi|432328759|ref|YP_007246903.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
gi|432135468|gb|AGB04737.1| DNA polymerase III, gamma/tau subunit [Aciduliprofundum sp.
MAR08-339]
Length = 320
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 127/310 (40%), Positives = 179/310 (57%), Gaps = 14/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRPK +D+V+ Q+E+V LK + +PH LF GP GTGKT+ IA +LFGD
Sbjct: 5 WVEKYRPKNLDEVVGQKEIVERLKSYVKAKSMPHLLFAGPAGTGKTTCAIALARELFGDN 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R ELNASD+RGI ++R K+K +A+ A N G FKI+ LDEAD++T AQ
Sbjct: 65 WRSSFHELNASDERGIGIVRTKIKEYARTAAP--NDVG-----FKIIFLDEADALTPDAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +++ RF L CNY S II+P+ SRC+ FRF PL + RL+YI E E
Sbjct: 118 AALRRTMEMYSRTCRFILSCNYSSKIIEPIQSRCAVFRFTPLKAEDIKKRLRYIAENEGK 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
AL+ +V S GDMR+AI LQ A + + I V + TG+ +E+++K
Sbjct: 178 EITDDALDAIVYISSGDMRKAINILQMSAAI--SDTIDEGTVYKATGIAKREDVEEVVKK 235
Query: 275 ----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
D K + L+ S + Q H ++ + D+ K +L++ E R+
Sbjct: 236 ALGGDFISARNKLNKLLVELGLSGEDVIKQIHRVIYDL-PIDDRLKVELLDRTGEIEFRM 294
Query: 331 QDGASEYIQI 340
+GA+E IQ+
Sbjct: 295 VEGANERIQL 304
>gi|134118756|ref|XP_771881.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254485|gb|EAL17234.1| hypothetical protein CNBN0610 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 327
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 135/337 (40%), Positives = 195/337 (57%), Gaps = 35/337 (10%)
Query: 33 VPW---VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
V W VEKYRP ++DDV+ +++ S ++K + LPH L YGPPGTGKTST++A +
Sbjct: 5 VGWDDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARR 64
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
L+G YR+ ILELNASDDRGI V+R+++K FA T F++ FK+VILDEAD M
Sbjct: 65 LYGPAYRKHILELNASDDRGIDVVREQIKNFA-MTKVLFSKG------FKLVILDEADMM 117
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQ+ALRR +E+ TK+ RFC++CNYV+ I + SRC++FRF PL E + ++ +
Sbjct: 118 TQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVV 177
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPW- 267
++E V + L++ S GDMRRA+ LQ+C IV+E V TG P+P
Sbjct: 178 QKEGVNLTDDGRDALLKLSRGDMRRALNVLQAC---HAAYDIVDETAVYNCTGN-PHPRD 233
Query: 268 IEKLLK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD------KQKAL 318
IE++++ D F I L +E A Q D++ A D + +
Sbjct: 234 IERVVQSMMADEFGTAYSLITSLKIEKGLALQ------DLIAGAYEFLDTVELPKQSRIY 287
Query: 319 ILEKLAECNARLQDGASEYIQILDLGSIVIKANKTAV 355
+L+ L RL G SE +Q+ + ++ A K AV
Sbjct: 288 LLDHLGSTEHRLSLGGSEKMQL----TALLGAFKVAV 320
>gi|299116532|emb|CBN74720.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 382
Score = 224 bits (572), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 132/344 (38%), Positives = 195/344 (56%), Gaps = 21/344 (6%)
Query: 11 GKDAPSSSKTSVS--TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
G P++S +V+ +T + +PWVEKYRP ++++++ +++V +L+K ++ LPH
Sbjct: 39 GAPGPTTSAAAVARLAHRETARQTLPWVEKYRPSSLEELVAHEDIVGILQKLIASNKLPH 98
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF 128
LFYGPPGTGKTST++A +L+G ++ +LELNASDDRGI V+R ++K FA T F
Sbjct: 99 LLFYGPPGTGKTSTILACAKKLYGADFKMMVLELNASDDRGIDVVRGQIKEFA-GTKRLF 157
Query: 129 NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
+ K+VILDEAD+MT+ AQ ALRR +EK TK TRFC+ICNYV+ II L SRC
Sbjct: 158 SSG------VKLVILDEADAMTNDAQFALRRVIEKYTKHTRFCMICNYVNKIIPALQSRC 211
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
+KFRF PL + RLQ++ +QE V +E ++ GDMRR + LQS
Sbjct: 212 TKFRFAPLKPEQIQGRLQHVVDQEKVTITPDGVEAVMRLGQGDMRRVLNLLQST---HMA 268
Query: 249 EGIVNEDVLEVTGVIP----NPWIEKLLKVDSFQ-VLEKYIEDLILEAYSATQLFDQFHD 303
V+E + P +I L SF+ + ++ + YS + +
Sbjct: 269 YQKVDERHAYLCAAAPLKEDMEYIRNALLTASFKDAFDGILKLTTAKGYSLGDIVQELAL 328
Query: 304 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
VM L +L++++ RL G SE +Q LGS+V
Sbjct: 329 KVMEI-ELPAAVMVHLLDEMSNTEERLAHGGSERLQ---LGSLV 368
>gi|327311517|ref|YP_004338414.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
gi|326947996|gb|AEA13102.1| replication factor C small subunit [Thermoproteus uzoniensis
768-20]
Length = 328
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 138/209 (66%), Gaps = 7/209 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ ++V++ +EV + LK+ + ++PH LFYGPPGTGKT+ + +L+GD
Sbjct: 8 WFEKYRPRSFEEVVDLEEVKARLKEFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGDA 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 68 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME +TRF L+ NYVS II P+ SRC+ FRF P+ + M RL YI +QE +
Sbjct: 121 QALRRIMEMYANTTRFILLANYVSRIIDPIISRCAVFRFPPMPKELMAKRLAYIAKQEGI 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCA 243
++ + E S GDMRRAI LQ A
Sbjct: 181 TVTEDGIDAIYEISQGDMRRAINLLQMAA 209
>gi|194761822|ref|XP_001963122.1| GF15785 [Drosophila ananassae]
gi|190616819|gb|EDV32343.1| GF15785 [Drosophila ananassae]
Length = 332
Score = 224 bits (570), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 134/319 (42%), Positives = 183/319 (57%), Gaps = 28/319 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + +S LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 MPWVEKYRPSGLDDLISHEEIISTISRFISRKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 PQQFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CDTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL+ + M+ RL+ I +
Sbjct: 124 DAQNALRRIIEKYTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSPDQMMPRLEKIIDA 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEK 270
E+V L+ + GDMR+ + LQS VNED V G IE+
Sbjct: 184 EAVQITEDGKRALLTLAKGDMRKVLNVLQSTVM---AFDKVNEDNVYTCVGYPLRQDIEQ 240
Query: 271 LLKV--------DSFQVLE--KYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
+LK DSF+ +E KY L LE + + H VM LI+
Sbjct: 241 ILKALLSGNSVEDSFKTVENAKYARGLALE-----DILTELHLFVMRLELPMSVMNKLIV 295
Query: 321 EKLAECNARLQDGASEYIQ 339
KLA+ RL G +E Q
Sbjct: 296 -KLAQIEERLAKGCTEPAQ 313
>gi|380015701|ref|XP_003691836.1| PREDICTED: replication factor C subunit 5-like [Apis florea]
Length = 330
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 128/323 (39%), Positives = 190/323 (58%), Gaps = 16/323 (4%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
TS T++ +PWVEKYRPK +DD+I +E++ + K + LPH LFYGPPGTGKTST+
Sbjct: 3 TSKPTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTI 62
Query: 84 IAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A +L+ + +LE+NASDDRGI ++R ++ +FA T + + FK++I
Sbjct: 63 LACARKLYTPAQFNSMVLEMNASDDRGINIVRGQILSFAS-TGTMYRSG------FKLII 115
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT+ AQ ALRR +EK T + RFC+ICNY+S II L SRC+KFRF PL+ + +L
Sbjct: 116 LDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQIL 175
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL I ++E++ + L+ SGGDMR+ + LQS G + E+V G
Sbjct: 176 PRLDTIIKEENLNVTEDGKQALITLSGGDMRKVLNVLQSTWLAFG--AVTEENVYSCVGH 233
Query: 263 IPNPW----IEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQKA 317
P P I L +S+++ I+D+ L+ A Q + + H ++ D
Sbjct: 234 -PLPIDIKNIVNWLFNESYELCYCKIQDIKLKKGLALQDILTELHLFIIKVFEFPDSILI 292
Query: 318 LILEKLAECNARLQDGASEYIQI 340
++ KLAE R+ G SE +Q+
Sbjct: 293 DLIIKLAEIEKRVSIGCSEAVQL 315
>gi|256811337|ref|YP_003128706.1| replication factor C small subunit [Methanocaldococcus fervens
AG86]
gi|256794537|gb|ACV25206.1| Replication factor C [Methanocaldococcus fervens AG86]
Length = 316
Score = 224 bits (570), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 130/316 (41%), Positives = 189/316 (59%), Gaps = 24/316 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+D+++ Q E+V LKK + +PH LF GPPG GKT+ + LFG+
Sbjct: 4 PWVEKYRPKTLDEIVGQDEIVKRLKKYVEKKSMPHLLFSGPPGVGKTTAALCLARDLFGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELNASD+RGI VIR KVK FA+ G PFKI+ LDE+D++T A
Sbjct: 64 NWRENFLELNASDERGIDVIRTKVKDFARTKPIG-------DVPFKIIFLDESDALTPDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL + + +L+ I E+E
Sbjct: 117 QNALRRTMEKYSDVCRFILSCNYPSKIIPPIQSRCAIFRFSPLKKEDIAKKLKEIAEKEG 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ LE ++ S GDMR+AI LQ+ A L E I +E V +V+ ++K+++
Sbjct: 177 LKLTESGLEAIIYVSEGDMRKAINVLQTAAAL--SEVIDDEIVYKVSSRARPEEVKKMME 234
Query: 274 VDSFQVLE-KYIE--DLILE-----AYSATQLFDQ-FHDIVMSASSLSDKQKALILEKLA 324
+ LE K++E DL+ + S + +Q F +I + + +++K + + +
Sbjct: 235 L----ALEGKFVEARDLLYKLMVEWGMSGEDILNQMFREI--NNLDIDERKKVELADAIG 288
Query: 325 ECNARLQDGASEYIQI 340
E + R+ +GA+E IQ+
Sbjct: 289 ETDFRIVEGANERIQL 304
>gi|50513623|pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 223 bits (569), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 201/348 (57%), Gaps = 33/348 (9%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+STS + R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L S+C++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + E + A + L+E S GDMRR + LQSC A L E +++DV+
Sbjct: 174 IERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIY 233
Query: 259 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAY---------SATQLFDQFHDIV--MS 307
P P D VL+ +ED A+ L D IV +
Sbjct: 234 ECCGAPRP-------SDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILE 286
Query: 308 ASSLSDKQ-KALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
L +++ + +L KLA+ + G ++ IQ GS VI A K +
Sbjct: 287 DYELQNEETRVHLLTKLADIEYSISKGGNDQIQ----GSAVIGAIKAS 330
>gi|58262376|ref|XP_568598.1| DNA replication factor [Cryptococcus neoformans var. neoformans
JEC21]
gi|57230772|gb|AAW47081.1| DNA replication factor, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 327
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 195/337 (57%), Gaps = 35/337 (10%)
Query: 33 VPW---VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
V W VEKYRP ++DDV+ +++ S ++K + LPH L YGPPGTGKTST++A +
Sbjct: 5 VGWDDRVEKYRPVSLDDVVSHKDITSTIEKFIEAGRLPHLLLYGPPGTGKTSTVLALARR 64
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
L+G YR+ ILELNASDDRGI V+R+++K FA T F++ FK+VILDEAD M
Sbjct: 65 LYGPAYRKHILELNASDDRGIDVVREQIKNFA-MTKVLFSKG------FKLVILDEADMM 117
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQ+ALRR +E+ TK+ RFC++CNYV+ I + SRC++FRF PL E + ++ +
Sbjct: 118 TQAAQSALRRVIEQHTKNVRFCILCNYVNKITPAIQSRCTRFRFSPLPEKEIQVKVDEVV 177
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPW- 267
++E V + +++ S GDMRRA+ LQ+C IV+E V TG P+P
Sbjct: 178 QKEGVNLTDDGRDAILKLSRGDMRRALNVLQAC---HAAYDIVDETAVYNCTGN-PHPRD 233
Query: 268 IEKLLK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD------KQKAL 318
IE++++ D F I L +E A Q D++ A D + +
Sbjct: 234 IERVVQSMMADEFGTAYSLITSLKIEKGLALQ------DLIAGAYEFLDTVELPKQSRIY 287
Query: 319 ILEKLAECNARLQDGASEYIQILDLGSIVIKANKTAV 355
+L+ L RL G SE +Q+ + ++ A K AV
Sbjct: 288 LLDHLGSTEHRLSLGGSEKMQL----TALLGAFKVAV 320
>gi|349580660|dbj|GAA25819.1| K7_Rfc3p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 340
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 137/348 (39%), Positives = 200/348 (57%), Gaps = 33/348 (9%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+S S + R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSKSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + E + A + L+E S GDMRR + LQSC A L E +++DV+
Sbjct: 174 IERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIY 233
Query: 259 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAY---------SATQLFDQFHDIV--MS 307
P P D VL+ +ED A+ L D IV +
Sbjct: 234 ECCGAPRP-------SDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILE 286
Query: 308 ASSLSDKQ-KALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
L +++ + +L KLA+ + G ++ IQ GS VI A K +
Sbjct: 287 DYELQNEETRVHLLTKLADIEYSISKGGNDQIQ----GSAVIGAIKAS 330
>gi|341892966|gb|EGT48901.1| hypothetical protein CAEBREN_08790 [Caenorhabditis brenneri]
Length = 349
Score = 223 bits (569), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 178/322 (55%), Gaps = 9/322 (2%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
S +T +PWVEKYRP D+++ ++VV L + + LPH LFYGPPGTGKT+T++
Sbjct: 3 STRTVASNLPWVEKYRPSKFDELVAHEQVVKTLTRFIENRTLPHLLFYGPPGTGKTTTVL 62
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTA-SGFNQDGKPCPPFKIVI 142
AA +++ +LELNASD+RGI V+R+ + TFAQ F PFK+VI
Sbjct: 63 AAARKMYSPAKMASMVLELNASDERGIDVVRNTIVTFAQTKGLQSFASASSEQLPFKLVI 122
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T + RFC+ICNY++ II + SRC++FRF PL + ++
Sbjct: 123 LDEADAMTRDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQQLIV 182
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG- 261
RLQ+I + ESV + L+ S GDMR I LQS A + + V + G
Sbjct: 183 PRLQHIVDSESVKMTPDGQKALLTVSKGDMRTVINTLQSTA--MSFDTVSESTVYQCIGQ 240
Query: 262 VIPNPWIEK---LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
PN E LL S + +E L + Y+ + HDIV + + D+
Sbjct: 241 PTPNEMKEVVTCLLNKPSKECMETIKSRLFMNGYALQDVITHLHDIVFTM-DIPDEAMTS 299
Query: 319 ILEKLAECNARLQDGASEYIQI 340
I+ L E L G S +Q+
Sbjct: 300 IICGLGEVEENLASGCSNELQL 321
>gi|351711981|gb|EHB14900.1| Replication factor C subunit 4 [Heterocephalus glaber]
Length = 293
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 113/182 (62%), Positives = 136/182 (74%), Gaps = 8/182 (4%)
Query: 1 MEAFLRTGKLGKDAPSSSKT-----SVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVV 54
M+AFL+ G L P S+K + +SG+ + KPVPWVEKY PK +D+V Q+ VV
Sbjct: 1 MQAFLK-GTLISTKPLSTKNQDVAATAGSSGENKKVKPVPWVEKYCPKCVDEVAFQEVVV 59
Query: 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVI 113
+VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+ ELNASD+RGIQV+
Sbjct: 60 AVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRSRVFELNASDERGIQVV 119
Query: 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
R+KVK FAQ SG DGKPCP FK VILDEADSMT AQ ALR TMEKE K+TRF LI
Sbjct: 120 REKVKKFAQLAISGSRSDGKPCPSFKTVILDEADSMTSVAQVALRHTMEKELKTTRFYLI 179
Query: 174 CN 175
CN
Sbjct: 180 CN 181
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 48/68 (70%)
Query: 276 SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 335
SF LE +++LI E ++ATQL +Q HD ++ +LSDKQK+++ +KL E + L DGA
Sbjct: 214 SFDKLEAVVKNLISEGHAATQLVNQLHDAIVENDNLSDKQKSIMTQKLVEADKCLADGAD 273
Query: 336 EYIQILDL 343
E++Q++ L
Sbjct: 274 EHLQLISL 281
>gi|254564511|ref|XP_002489366.1| replication factor C subunit [Komagataella pastoris GS115]
gi|238029162|emb|CAY67082.1| Subunit of heteropentameric Replication factor C (RF-C)
[Komagataella pastoris GS115]
gi|328349795|emb|CCA36195.1| replication factor C subunit 2/4 [Komagataella pastoris CBS 7435]
Length = 324
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 124/322 (38%), Positives = 184/322 (57%), Gaps = 32/322 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK + D++ ++ + LK ++PH + G PG GKT+++ H+L G
Sbjct: 9 LPWVEKYRPKLLKDIVGNEDTIERLKAFAIDGNVPHMIISGLPGIGKTTSVHCLAHELLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
DMY + +LELNASDDRGI+V+R+K+K FA + S PP KIVILDEADSMT
Sbjct: 69 DMYYDAVLELNASDDRGIEVVRNKIKQFAHKKVS--------LPPGRHKIVILDEADSMT 120
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF CN + II+PL SRCS R+ L + +L+RL YIC+
Sbjct: 121 PGAQQALRRTMEIYSGTTRFVFACNMSNKIIEPLQSRCSILRYSKLYDEQVLSRLLYICK 180
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
+E V LE L+ T+ GDMR+AI LQS G G+VN D + P+P + +
Sbjct: 181 EEGVKYTDDGLEALIFTAEGDMRQAINNLQSTV---AGMGLVNGDNVFRIVDSPHPLVVR 237
Query: 271 LLKVDSFQVLEKYIEDLILEA------------YSATQLFDQFHDIVMSASSLSDKQKAL 318
Q+L K ++D ++A YSA + ++ S + + + +
Sbjct: 238 -------QMLFKAVKDSDIDAAVDLLNRLWEKGYSAVDIVSTSFKVMKSVTEIPEADRLE 290
Query: 319 ILEKLAECNARLQDGASEYIQI 340
++ ++ + R+ +G S Y+Q+
Sbjct: 291 VMREIGFTHMRVLEGVSSYLQL 312
>gi|390346340|ref|XP_003726529.1| PREDICTED: replication factor C subunit 5-like [Strongylocentrotus
purpuratus]
Length = 342
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 128/326 (39%), Positives = 185/326 (56%), Gaps = 15/326 (4%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
S +K +PWVEKYRP ++DD+I E+++ ++K + LPH LFYGPPGTGKTST++
Sbjct: 2 SRANEHKNLPWVEKYRPNSLDDLISHTEIINTIQKFIKQDRLPHLLFYGPPGTGKTSTIL 61
Query: 85 AACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A QL+ + +LELNASDDRGI ++R + FA T + F FK+VIL
Sbjct: 62 AVAKQLYAPKEFNSMVLELNASDDRGIGIVRGSILNFAS-TRTIFKSG------FKLVIL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT+ AQ ALRR +EK T++TRFC ICNY+S II L SRC++FRF PL ++
Sbjct: 115 DEADAMTNDAQNALRRVIEKFTENTRFCFICNYLSKIIPALQSRCTRFRFGPLDNQQIVP 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
RL+++ +E+V + L+ + GDMRR I LQS + E + E+V TG
Sbjct: 175 RLEFVVREENVDMTEDGKKALITLAKGDMRRVINILQSTS--MAHEKVTEENVYLCTGHP 232
Query: 264 PNPWIEKLLKV---DSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
IE ++ + F +I L L+ + + + H V K + +
Sbjct: 233 LRTDIENIVNWMLNEDFTAAFNHINQLKTLKGLALLDILLEVHTYVHRI-EFPQKVRIYL 291
Query: 320 LEKLAECNARLQDGASEYIQILDLGS 345
L+K+++ RL G SE +Q GS
Sbjct: 292 LDKMSDIEYRLAAGTSEKLQPWVFGS 317
>gi|50294179|ref|XP_449501.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528815|emb|CAG62477.1| unnamed protein product [Candida glabrata]
Length = 331
Score = 223 bits (569), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 119/244 (48%), Positives = 159/244 (65%), Gaps = 11/244 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T+DDV Q+EVV +KK + LPH LFYGPPGTGKTST++A ++G
Sbjct: 9 LPWVEKYRPQTLDDVYGQREVVGTVKKFVQEGKLPHLLFYGPPGTGKTSTIVALAKDIYG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT+A
Sbjct: 69 KNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKLIILDEADAMTNA 121
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++ NY I L SRC++FRF+PL + + R+ + E
Sbjct: 122 AQNALRRIIEKYTKNTRFCILANYSHKITPALLSRCTRFRFQPLPNDAVEKRMANVLVHE 181
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQ-SCARLKGGEG-IVNEDVLEVTGVIPNPW-IE 269
+ A E L+E S GDMRR + LQ S A L+ E I +E + E G P P I+
Sbjct: 182 HLRISPAAKEALLELSNGDMRRVLNVLQASKATLESPEDEITDEVIYECCGA-PRPQDIQ 240
Query: 270 KLLK 273
+LK
Sbjct: 241 TILK 244
>gi|433637069|ref|YP_007282829.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
gi|433288873|gb|AGB14696.1| DNA polymerase III, gamma/tau subunit [Halovivax ruber XH-70]
Length = 329
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 185/321 (57%), Gaps = 18/321 (5%)
Query: 27 KTRNKPVP---WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
+T + P P W+EKYRP+++DDV + +V L+K + DLPH +F GP G GKT++
Sbjct: 7 ETESSPDPTGIWIEKYRPESLDDVKGHENIVPRLRKYVEQDDLPHLMFAGPAGVGKTASA 66
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A +L+G+ +RE LELNASD+RGI V+RD++K FA+ + G ++I+ L
Sbjct: 67 GAIARELYGEDWREHFLELNASDERGIDVVRDRIKNFARSSFGGVK--------YRIIFL 118
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L++ +
Sbjct: 119 DEADALTSDAQSALRRTMEQFSHNTRFILSCNYSSQIIDPIQSRCAVFRFTELSDEAIEA 178
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
+ + I E E + ++ LV + GDMR+AI LQ+ A + GE + V +T
Sbjct: 179 QTREIAETEGISLTDDGVDALVYAAAGDMRKAINGLQAAAVM--GEEVDEAAVFAITSTA 236
Query: 264 PNPWIEKLLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI 319
+EK++ F +EDL+ + + + DQ H L + + +
Sbjct: 237 RPEEVEKMVDQAIGGDFTAARATLEDLLTDRGLAGGDVIDQLHRSAWE-FDLGEHETVRL 295
Query: 320 LEKLAECNARLQDGASEYIQI 340
LE+L E + R+ +GA+E +Q+
Sbjct: 296 LERLGEVDYRITEGANERLQL 316
>gi|224072550|ref|XP_002188696.1| PREDICTED: replication factor C subunit 5 [Taeniopygia guttata]
Length = 329
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 187/321 (58%), Gaps = 25/321 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + +++ ++++S +++ +S LPH L YGPPGTGKTST++A QL
Sbjct: 9 LPWVEKYRPQALSELVFHRDILSTVQRFISEDRLPHLLLYGPPGTGKTSTILACARQL-- 66
Query: 93 DMYRER-----ILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
YRER +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD
Sbjct: 67 --YREREFSSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEAD 117
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RLQ+
Sbjct: 118 AMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLQH 177
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV----- 262
+ ++E V ++ LV S GDMRRA+ LQS + G + E+V TG
Sbjct: 178 VIQEEGVDVTEDGMKALVTLSSGDMRRALNILQSTSMAFG--KVTEENVYTCTGHPLKSD 235
Query: 263 IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
I N ++ +L D K +E L+ + + + H V + +L K
Sbjct: 236 IAN-ILDWMLNQDFSTAYRKIMELKTLKGLALQDILTEIHLFVHRV-DFPPSIRIQLLIK 293
Query: 323 LAECNARLQDGASEYIQILDL 343
LA+ RL G SE IQ+ L
Sbjct: 294 LADIEYRLAAGTSEKIQLSSL 314
>gi|448312591|ref|ZP_21502333.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
gi|445601042|gb|ELY55036.1| replication factor C small subunit [Natronolimnobius
innermongolicus JCM 12255]
Length = 330
Score = 223 bits (568), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/328 (36%), Positives = 187/328 (57%), Gaps = 19/328 (5%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +D++ + ++ LK + DLPH +F GP G
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDEIKGHENIIPRLKNYVEQDDLPHIMFAGPAGV 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT++ A +++GD +RE LELNASD RGI V+RD++K FA+ + G+N
Sbjct: 62 GKTASSQAIAREIYGDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYN-------- 113
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
++I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 114 YRIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ + +++ I + E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 DDAIEAQVREIADTEGIAVTDDGVDALVYAADGDMRKAINGLQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSD 313
+T +E ++ F +EDL++E + + DQ H SA
Sbjct: 232 AITSTARPEEVEAMVDHAIAGDFTAARAALEDLLMERGLAGGDVIDQLH---RSAWEFDI 288
Query: 314 KQKALI--LEKLAECNARLQDGASEYIQ 339
++A + LE+L E + R+ +GA+E +Q
Sbjct: 289 PEQATVRLLERLGEVDYRITEGANERLQ 316
>gi|18312778|ref|NP_559445.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
gi|42559510|sp|Q8ZWS2.1|RFCS2_PYRAE RecName: Full=Replication factor C small subunit 2; Short=RFC small
subunit 2; AltName: Full=Clamp loader small subunit 2
gi|18160261|gb|AAL63627.1| replication factor C small subunit [Pyrobaculum aerophilum str.
IM2]
Length = 319
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 147/229 (64%), Gaps = 9/229 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II+P+ SR RF PL + + RL+YI E E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
ALE + E + GDMRRAI LQ A + + + E V + G++
Sbjct: 179 KVSDDALEAIYEFTQGDMRRAINALQIAATV--SKAVTEEVVAKALGMV 225
>gi|126458633|ref|YP_001054911.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|158513488|sp|A3MS28.1|RFCS_PYRCJ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|126248354|gb|ABO07445.1| Replication factor C [Pyrobaculum calidifontis JCM 11548]
Length = 326
Score = 223 bits (567), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 182/326 (55%), Gaps = 30/326 (9%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ ++V++ +EV + L++ + +LPH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGIGVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL+ I E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARSEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN----------EDVLEVTGVIP 264
A++ + E S GDMR+AI LQ A + DVLE+ +
Sbjct: 179 ELKDDAIDLIYEISEGDMRKAINLLQVAAAVSKVVDANAVASAAAAVRPSDVLELFNLA- 237
Query: 265 NPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
+ D + +K E + ++ + L F ++ L D KA + E L+
Sbjct: 238 -------MGGDLAKARDKLRELMYIKGVAGVDLIRVFQRELIRM-QLDDDVKAEVAELLS 289
Query: 325 ECNARLQDGASEYIQ----ILDLGSI 346
E + RL GA E IQ ++ LGSI
Sbjct: 290 EVDYRLTQGADEEIQLMYFLMKLGSI 315
>gi|322368069|ref|ZP_08042638.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
gi|320552085|gb|EFW93730.1| replication factor C small subunit [Haladaptatus paucihalophilus
DX253]
Length = 325
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 182/310 (58%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+T+DDV ++ + LK + DLP+ LF G G GKT+ +A +L+GD
Sbjct: 16 WVEKYRPQTLDDVAGHDDITARLKSYIERNDLPNLLFSGQAGIGKTTCAVAIAKELYGDS 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ LELNASD+RGI V+RD++K FA+ + F+I+ LDEADS+T AQ
Sbjct: 76 WQSHFLELNASDERGIDVVRDQIKNFARHDPGAVD--------FQIIFLDEADSLTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME+ + TRF + CNY S II P+ SRC+ FRF P+ ++ + +QY+ ++E +
Sbjct: 128 AALRRTMEQFSDKTRFIMSCNYSSKIIDPIQSRCAVFRFGPIPDDAVAGYVQYVADEEGI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
+E LV + GDMR+AI LQ+ A + GE + E V +T I+++++
Sbjct: 188 ETTDDGIEALVYAADGDMRKAINALQAAAVM--GEQVDEESVFVITSTARPEDIKEMVRH 245
Query: 274 -VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F +++L+ E + + DQ H + L D +LE++ E + R+
Sbjct: 246 AIDGDFTRSRSILDELLTERGMAGGDIIDQLHRSIWE-FDLDDDDAVRVLERVGEADFRI 304
Query: 331 QDGASEYIQI 340
+GA+E +Q+
Sbjct: 305 TEGANERVQL 314
>gi|70949672|ref|XP_744225.1| replication factor C3 [Plasmodium chabaudi chabaudi]
gi|56524090|emb|CAH80967.1| replication factor C3, putative [Plasmodium chabaudi chabaudi]
Length = 328
Score = 223 bits (567), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/322 (39%), Positives = 190/322 (59%), Gaps = 17/322 (5%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
VEKYRP ++D+I ++V+S ++K + +LPH L +GPPGTGKTST++A C +L+GD
Sbjct: 1 VEKYRPGVLNDIISHEQVISTIRKFVEKGELPHLLLHGPPGTGKTSTILAVCKELYGDSR 60
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
+LELNASDDRGI V+R+++KTFA ++ + +N + K++ILDEAD MT AQ
Sbjct: 61 SSFVLELNASDDRGITVVREQIKTFA-ESKNHYNICER--TSLKLIILDEADHMTFPAQN 117
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
A+RR ME K+ RFCLICNYV+ I + SRC+ FRF PL E ML + I + E+V
Sbjct: 118 AMRRIMENYAKNVRFCLICNYVNKITPAIQSRCTSFRF-PLKEEYMLNKALDIAKSENVN 176
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIEK 270
+E+L+ GDMRR + CLQ + L +++E+V+ T IP P +E
Sbjct: 177 ITKNGVESLIRVGRGDMRRILNCLQVVS-LSHKNMVIDENVILSTLDIPLPSEIKFILEH 235
Query: 271 LLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
L K +S++++ K ED + YS + ++ V++ D L+L+ E
Sbjct: 236 LTKSTIKESYEIITKLQED---KGYSIKDIMICLYEAVLTY-DYPDSAICLLLKNFGEIE 291
Query: 328 ARLQDGASEYIQILDLGSIVIK 349
R GA+E I + L S I+
Sbjct: 292 ERCASGATEQITLSSLISAFIE 313
>gi|379003246|ref|YP_005258918.1| DNA polymerase III subunit gamma and tau [Pyrobaculum oguniense
TE7]
gi|375158699|gb|AFA38311.1| DNA polymerase III, gamma/tau subunits [Pyrobaculum oguniense TE7]
Length = 322
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 154/244 (63%), Gaps = 10/244 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NY+S II+P+ SR RF PL + + RL+YI + E V
Sbjct: 119 QALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
ALE + E + GDMRRAI LQ A G+ I E V + G++ + + L
Sbjct: 179 KITDDALEAIYEFTQGDMRRAINALQIAA--TTGKEITEETVAKALGMVSPRLLRETLN- 235
Query: 275 DSFQ 278
D+F+
Sbjct: 236 DAFR 239
>gi|408397619|gb|EKJ76759.1| hypothetical protein FPSE_02945 [Fusarium pseudograminearum CS3096]
Length = 390
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 145/215 (67%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 42 LPWVEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARRIYG 101
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA + G ++ G FK++ILDEAD
Sbjct: 102 AANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASRSGNAMAGFKLIILDEAD 161
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 162 AMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVDK 221
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E+V +A++ LV+ S GDMRRA+ LQ+C
Sbjct: 222 VVEEENVQVKGEAIDALVKLSKGDMRRALNVLQAC 256
>gi|341038392|gb|EGS23384.1| DNA replication factor C-like protein [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 388
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/331 (39%), Positives = 188/331 (56%), Gaps = 24/331 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+ DV Q++++ + K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 42 LPWVEKYRPATLSDVSGHQDILATINKFIESNRLPHLLFYGPPGTGKTSTILALARRIYG 101
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
+ R+ +LELNASDDRGI+V+R+++KTFA Q G + FK++ILDEAD+
Sbjct: 102 AENMRQMVLELNASDDRGIEVVREQIKTFASTKQIFTMGSSAGRAGIAAFKLIILDEADA 161
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+ AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + + +
Sbjct: 162 MTNTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEQDIRSLVDKV 221
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCA------RLKGG----------EGIV 252
E+E+V A+E+LV+ S GDMRRA+ LQ+C +L+ G + I
Sbjct: 222 IEEENVKITPDAVESLVKLSRGDMRRALNVLQACHASSTPLQLRDGPKIPGDQIVRDTIT 281
Query: 253 NEDVLEVTGVIPNPWIEKLLK--VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS 310
E + P I+K+L + + V +L+ L D +
Sbjct: 282 TETIYNCVAAPPPDAIKKILNTLLSTSDVTACLTIINMLKISQGLALADIITSLSEELVK 341
Query: 311 LSDKQKALI--LEKLAECNARLQDGASEYIQ 339
L K + +I L+ LAE R+ GA+E IQ
Sbjct: 342 LEVKPQVMITWLDALAEIEYRVASGANEAIQ 372
>gi|448408398|ref|ZP_21574193.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
gi|445674253|gb|ELZ26797.1| replication factor C small subunit [Halosimplex carlsbadense 2-9-1]
Length = 327
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/322 (35%), Positives = 185/322 (57%), Gaps = 15/322 (4%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
+ SG + W+EKYRP+T+D+++ Q+++V L+ + DL HF+F GP G GKT++
Sbjct: 6 TDSGSRAGREEVWIEKYRPQTLDEIVGQEDIVERLQSYVDRNDLSHFMFSGPAGIGKTTS 65
Query: 83 MIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
A +L+GD +R+ LELNASD+RGI V+RD++K FA+ + G+ ++I+
Sbjct: 66 ATAIARELYGDDWRDNFLELNASDERGIDVVRDRIKNFARTSFGGY--------EYRIIF 117
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD++T AQ ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PL++ +
Sbjct: 118 LDEADALTSDAQGALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFAPLSDEAVA 177
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
+++I +E + L+ LV + GDMR+AI LQ+ + G+ + E V +T
Sbjct: 178 EEMRHIAGEEGIEFTDDGLDALVYAADGDMRKAINALQAASVT--GDVVDEEAVYALTST 235
Query: 263 IPNPWIEKLLK---VDSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKAL 318
I++++ F ++ L+ E + + DQ H V L D+
Sbjct: 236 AKPEEIKEMVDQALAGDFTAARSTLDRLLTEEGIAGGDVIDQLHRSVWE-FDLDDEAAVR 294
Query: 319 ILEKLAECNARLQDGASEYIQI 340
+L+++ E R+ GA+E IQ+
Sbjct: 295 LLDRIGETEYRITTGANERIQL 316
>gi|365982341|ref|XP_003668004.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
gi|343766770|emb|CCD22761.1| hypothetical protein NDAI_0A06060 [Naumovozyma dairenensis CBS 421]
Length = 338
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/222 (47%), Positives = 148/222 (66%), Gaps = 7/222 (3%)
Query: 21 SVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
SV + N +PWVEKYRP+++DDV Q EVV+ ++K L LPH LFYGPPGTGKT
Sbjct: 2 SVPNNHGNTNDNLPWVEKYRPESLDDVYGQTEVVTTVRKFLEEGKLPHLLFYGPPGTGKT 61
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A ++FG Y +LELNASDDRGI+V+R+++K FA T F++ FK+
Sbjct: 62 STIVALAREIFGKNYSNMVLELNASDDRGIEVVRNQIKDFA-STRQIFSKG------FKL 114
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 115 IILDEADAMTNAAQNALRRIIEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPRDA 174
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ R+ + E++ A + L+ S GDMRR + LQ+
Sbjct: 175 IEKRISNVLIHENIKISDDAKDALITLSQGDMRRVLNVLQAS 216
>gi|442754535|gb|JAA69427.1| Putative replication factor c subunit rfc5 [Ixodes ricinus]
Length = 328
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 129/328 (39%), Positives = 195/328 (59%), Gaps = 21/328 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I ++++S + + ++ LPH LFYGPPGTGKTST++A Q++G
Sbjct: 11 LPWVEKYRPNKLDDLIAHEDIISTINRFINEDRLPHLLFYGPPGTGKTSTILACARQIYG 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI ++R ++ FA T S F FK++ILDEAD+MT+
Sbjct: 71 PKEFGSMVLELNASDDRGIGIVRGEILNFAS-TKSIFKSG------FKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++ RFCLICNY+S II L SRC++FRF PL+ + M R++Y+ EQ
Sbjct: 124 DAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSLSQMSPRIEYVIEQ 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV-----IPNP 266
E + + L++ + GDMR+A+ LQS + E + +V + G+ I N
Sbjct: 184 ERLTVTDDGKKALMDLAQGDMRKALNILQSTS--MAFEEVTENNVYQCVGLPLKSDISNM 241
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
I LL D ++ + + + + + Q H + + ++ K +++K+AE
Sbjct: 242 VI-TLLNEDFAFSYDQINKVKVSKGLALQDVLTQIH-LYVHRIEFPNEVKMYLIDKMAEI 299
Query: 327 NARLQDGASEYIQILDLGSIVIKANKTA 354
RL G SE IQ+ S +I A +TA
Sbjct: 300 ENRLAAGTSEKIQL----SSLIAAFQTA 323
>gi|255082558|ref|XP_002504265.1| predicted protein [Micromonas sp. RCC299]
gi|226519533|gb|ACO65523.1| predicted protein [Micromonas sp. RCC299]
Length = 355
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 110/256 (42%), Positives = 152/256 (59%), Gaps = 7/256 (2%)
Query: 11 GKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFL 70
G DAP K S + + + WVEKYRP + DV ++++ + + S LP+ L
Sbjct: 10 GGDAPQRQKASAVDANDAKKNQM-WVEKYRPSKLSDVAAHKDIIDTIGRLTSQDRLPYLL 68
Query: 71 FYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130
YGPPGTGKTST++A +L+G + + LELNASDDRGI V+R+++ FA G N
Sbjct: 69 LYGPPGTGKTSTILAVAKELYGPQFSQMTLELNASDDRGIDVVRNEISAFASTMRFGSNA 128
Query: 131 DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
FK++ILDE DSMT AQ ALRR +EK TK TRFCLI NYVS +I L SRC++
Sbjct: 129 G------FKLIILDECDSMTKDAQFALRRIIEKYTKHTRFCLIGNYVSKVIPALQSRCTR 182
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
FRF PL N + R+Q++ QE++ A++ + GDMRR + LQS K G+G
Sbjct: 183 FRFSPLGPNAVKDRVQFVVRQENLQITDDAIDAVTRLGAGDMRRTLNILQSSFLSKEGDG 242
Query: 251 IVNEDVLEVTGVIPNP 266
++ + + T P P
Sbjct: 243 PIDANSVYATTGQPRP 258
>gi|213405245|ref|XP_002173394.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
gi|212001441|gb|EEB07101.1| replication factor C subunit 3 [Schizosaccharomyces japonicus
yFS275]
Length = 338
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 197/334 (58%), Gaps = 32/334 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DDV+ +++++ L+K +S +PH LFYGPPGTGKTST++A ++++G
Sbjct: 20 LPWVEKYRPKNLDDVVAHKDIIATLEKFISTNRVPHMLFYGPPGTGKTSTILACANRIYG 79
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+R +++ELNASDDRGI V+R+++K+FA T F+ FK++ILDE D+MT A
Sbjct: 80 PNFRNQVMELNASDDRGIDVVREQIKSFA-STKQIFSS------AFKLIILDETDAMTLA 132
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK T++ RFC+ICNY++ I + SRC++FRF+PL + ++ + E+E
Sbjct: 133 AQNALRRVIEKYTRNVRFCIICNYINKIAPAIQSRCTRFRFQPLPITEIEKKVDEVAEKE 192
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+ + L+ S GDMR+A+ LQ+C + +V+E + P+P
Sbjct: 193 NCTISPEGKTALLRLSKGDMRKALNILQACHAVY---DVVDEAAVYNCVGHPHPA----- 244
Query: 273 KVDSFQVLEKYIEDLILEAYSATQLFDQ-----FHDIVMSASSLSDK------QKALILE 321
+D F L+ + + ++ A +A Q DI+ S D+ + IL+
Sbjct: 245 DIDYF--LKSIMNEEVVTASNAITKLKQDKGLALQDIIACISEAIDELQIPANARIFILD 302
Query: 322 KLAECNARLQDGASEYIQILDLGSIVIKANKTAV 355
LA+ R+ G SE IQ+ S +I KT V
Sbjct: 303 NLAKIEYRMSFGCSEKIQL----SALIATIKTGV 332
>gi|308800034|ref|XP_003074798.1| rfc5 replication factor C subunit 5 (36kDa), probable (IC)
[Ostreococcus tauri]
gi|119358795|emb|CAL52056.2| rfc5 replication factor C subunit 5 (36kDa), probable (IC)
[Ostreococcus tauri]
Length = 341
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 190/327 (58%), Gaps = 14/327 (4%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PW EKYRP + +V+ + ++ V++K + LPH LF+GPPGTGKTST++A +L
Sbjct: 13 KHLPWTEKYRPLNLSEVVAHETIIDVIRKFAANGRLPHLLFHGPPGTGKTSTVLALTREL 72
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+ + +LELNASD RGI ++RD++++FA TA F+ FK+VI+DE DS+T
Sbjct: 73 YESNHSNMVLELNASDSRGINIVRDEIQSFAS-TARPFSS------AFKLVIMDECDSLT 125
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR MEK + TRFCLICNY S II + SRC+KFRF P+ ML RL+++
Sbjct: 126 KDAQFALRRIMEKYAQHTRFCLICNYASKIIPAIQSRCTKFRFAPVPAEAMLQRLRHVVC 185
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
E V +L+T+ GDMRR++ LQS I + + TG++ + +
Sbjct: 186 SERVQISGASLQTIQRLGEGDMRRSLNVLQSLH--LASTKITSATIHATTGLLDRCEVLE 243
Query: 271 LLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
L+V + + ++ L LE +++ T L + + + S +S + ++ +L+ LA+
Sbjct: 244 FLQVLFEKPMKSILNHLYRLKLEKSFALTDLIKEMSETLFSL-HMSVQVRSQLLKGLADV 302
Query: 327 NARLQDGASEYIQILDLGSIVIKANKT 353
L +SE IQ L L SI + +T
Sbjct: 303 EHALSFTSSEKIQTLSLISIFLHVRRT 329
>gi|326475565|gb|EGD99574.1| DNA replication factor C subunit Rfc3 [Trichophyton tonsurans CBS
112818]
gi|326483166|gb|EGE07176.1| DNA replication factor C subunit Rfc3 [Trichophyton equinum CBS
127.97]
Length = 397
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 193/365 (52%), Gaps = 40/365 (10%)
Query: 13 DAPSSSKTSVSTSGKTRNK--------PV------PWVEKYRPKTIDDVIEQQEVVSVLK 58
DAP + T+ T+ T K PV PWVEKYRP T+DDV Q++++ +
Sbjct: 11 DAPPARDTAAFTADPTDVKGKRIVADLPVEAGDNLPWVEKYRPDTLDDVSGHQDIIATIN 70
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKV 117
+ + LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++
Sbjct: 71 RFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQI 130
Query: 118 KTFA--QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
KTFA +Q S G FK++ILDEAD+MT AAQ ALRR MEK T +TRFC+I N
Sbjct: 131 KTFASTKQIFSTAPSSGSGLGAFKLIILDEADAMTSAAQMALRRIMEKYTANTRFCIIAN 190
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
Y + L SRC++FRF PL E + + + E+E V A+++LV S GDMRRA
Sbjct: 191 YTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIEKEEVQIQPDAVDSLVTLSKGDMRRA 250
Query: 236 ITCLQSCAR------LKGGEG--------IVNEDVLEVTGVIPNPW-----IEKLLKVDS 276
+ LQ+C K G+G + E+ + P+P +E LL
Sbjct: 251 LNVLQACHASSMPLPSKKGDGNEQQQERETITEETIYTCIAAPHPADIKIILETLLSTSD 310
Query: 277 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDGA 334
++ L+A L D + SL + + +E LA+ RL G
Sbjct: 311 VTSCLNTVQ--TLKANKGLALADIISALSTELQSLEVPAQVRVSWIEGLADVEWRLSGGG 368
Query: 335 SEYIQ 339
SE IQ
Sbjct: 369 SEVIQ 373
>gi|313243384|emb|CBY39995.1| unnamed protein product [Oikopleura dioica]
Length = 270
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/261 (44%), Positives = 170/261 (65%), Gaps = 4/261 (1%)
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
+FG++ ER+ ELNASD+RGI V+R+KVK FA TA+ DGK CP FK++ILDEADSM
Sbjct: 5 MFGNLASERVCELNASDERGIAVVREKVKNFAMTTANSQRADGKKCPNFKLIILDEADSM 64
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T +AQ ALRRTME +KSTRFCL+CNYVS II P+TSR +KFRF+ L + ++++I
Sbjct: 65 TKSAQEALRRTMEVYSKSTRFCLLCNYVSRIIDPITSRTAKFRFRLLPKEIQYNQIRHIR 124
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIE 269
E E+V A+E ++ + GDMRRA+ LQS RL E I +DV +V + P I+
Sbjct: 125 EAENVQISENAVEEIISVAAGDMRRAVNFLQSLHRLHEDE-ITPDDVRDVAILCPAEKID 183
Query: 270 KLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
+++ + S++ + ++ L+ + Y A Q Q D V++ ++ D QK I+ ++ +
Sbjct: 184 EVIREARSKSYENMLTKVQALLQDGYPAGQFMHQLQDAVIADDAIEDFQKVNIINQIGKA 243
Query: 327 NARLQDGASEYIQILDLGSIV 347
+ L DGA E +QIL + S++
Sbjct: 244 DHALTDGADEKVQILAIVSVL 264
>gi|448633051|ref|ZP_21674049.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
gi|445752408|gb|EMA03832.1| replication factor C small subunit [Haloarcula vallismortis ATCC
29715]
Length = 325
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 179/310 (57%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I QE +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAQEDI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQS 245
Query: 274 -VDSFQVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D + D +L E + + DQ H + + D+ +LE++ E + R+
Sbjct: 246 ALDGDFTASRATLDRLLTEEGIAGGDVIDQLHRSIWEF-DIDDEAAVRVLERIGETDYRI 304
Query: 331 QDGASEYIQI 340
GA+E +Q+
Sbjct: 305 TRGANERVQL 314
>gi|328859221|gb|EGG08331.1| hypothetical protein MELLADRAFT_47841 [Melampsora larici-populina
98AG31]
Length = 346
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 130/334 (38%), Positives = 199/334 (59%), Gaps = 30/334 (8%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
S + K++ +PWVEKYRP T+++V+ ++++ ++K ++ LPH LFYGPPGTGKTST
Sbjct: 15 SETEKSQKDNLPWVEKYRPSTLEEVVSHKDIIYTIQKFITSNRLPHLLFYGPPGTGKTST 74
Query: 83 MIAACHQLFGD--MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
++A QL+ ++ +LELNASDDRGI+V+R+++K FA +A G FK+
Sbjct: 75 ILAIARQLYQTPMSFKNNVLELNASDDRGIEVVREQIKNFA--SARMVFSSG-----FKL 127
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD MT AQ+ALRR +E+ TK+ RFC+ICNYV+ I + SRC+KFRF PL
Sbjct: 128 IILDEADQMTTTAQSALRRVIEQYTKNVRFCIICNYVNRISPAIQSRCTKFRFGPLDLPE 187
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEV 259
+ R+ + + E+++ + L+ GDMRR + +Q+C G G V+ED V E
Sbjct: 188 VDRRVGQVIDSENLVVTEDGRKALLNLCKGDMRRVLNVMQAC---HSGYGKVDEDSVYEC 244
Query: 260 TGVIPNP-WIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS------AS 309
TG P+P IE ++K + FQ K I+D+ + A Q DI++
Sbjct: 245 TGS-PHPKQIEDIVKSMMNEEFQTSFKRIQDIKVNFGLALQ------DIILGIYEFLKTV 297
Query: 310 SLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
L + + +L++L++ RL G SE +Q+ L
Sbjct: 298 ELGNLAQIYLLDQLSQIEYRLSTGGSEKLQLSGL 331
>gi|241955893|ref|XP_002420667.1| AAA ATPase family member, putative; replication factor C (RF-C)
subunit, putative [Candida dubliniensis CD36]
gi|223644009|emb|CAX41749.1| AAA ATPase family member, putative [Candida dubliniensis CD36]
Length = 339
Score = 222 bits (565), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/318 (38%), Positives = 188/318 (59%), Gaps = 15/318 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++V QQE+V ++K + LPH LFYGPPGTGKTST+IA +++G
Sbjct: 9 LPWVEKYRPDNLEEVKGQQEIVDTVRKFVETRKLPHLLFYGPPGTGKTSTIIALAKEIYG 68
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ Y++ ILELNASDDRGI V+R+++K FA + FK++ILDEAD+MT+
Sbjct: 69 SINYKDMILELNASDDRGIDVVRNQIKNFASTRQIFTKNNSINNDQFKLIILDEADAMTN 128
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ +LRR +EK TK+ RFC++ NY + L SRC++FRF P+ + + RL + +
Sbjct: 129 IAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDRLNIVIIK 188
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW---- 267
E+V A++ L++ S GDMRRA+ LQSC G + + +V + I P+
Sbjct: 189 ENVNISSDAIDALLKLSNGDMRRALNVLQSCKAALGDDENIEINVDMIYDCIGAPYPQDI 248
Query: 268 ---IEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
++ +LK D ++ L KY I++ + L F +I ++ L K + IL+
Sbjct: 249 ETCLDSILKDDWTTAYLTLNKY---KIIKGLALIDLITGFIEI-LNNYKLKSKTRLEILK 304
Query: 322 KLAECNARLQDGASEYIQ 339
L++ + G ++ IQ
Sbjct: 305 GLSDIEYGISKGGNDKIQ 322
>gi|46123299|ref|XP_386203.1| hypothetical protein FG06027.1 [Gibberella zeae PH-1]
Length = 390
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 104/215 (48%), Positives = 145/215 (67%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 42 LPWVEKYRPTTLDDVSGHQDILATINKFIEQNRLPHLLLYGPPGTGKTSTILALARRIYG 101
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA + G ++ G FK++ILDEAD
Sbjct: 102 AANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGGASRSGNGMAGFKLIILDEAD 161
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 162 AMTSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVDK 221
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E+V +A++ LV+ S GDMRRA+ LQ+C
Sbjct: 222 VVEEENVQVKGEAIDALVKLSKGDMRRALNVLQAC 256
>gi|367055770|ref|XP_003658263.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
gi|347005529|gb|AEO71927.1| hypothetical protein THITE_2124823 [Thielavia terrestris NRRL 8126]
Length = 389
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 137/360 (38%), Positives = 193/360 (53%), Gaps = 34/360 (9%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD 65
KD SS T+ N PV PWVEKYRP ++ DV Q++++ + K +
Sbjct: 16 KDITFSSDTAAKGKRSAANLPVEAEDSLPWVEKYRPVSLSDVSGHQDILATINKFVDSNR 75
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFA--- 121
LPH LFYGPPGTGKTST++A +++G R+ +LELNASDDRGI+V+R+ +KTFA
Sbjct: 76 LPHLLFYGPPGTGKTSTILALARRIYGHQNMRQMVLELNASDDRGIEVVREHIKTFASTK 135
Query: 122 QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181
Q +G + FK++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY +
Sbjct: 136 QIFTAGSSASRAGIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLS 195
Query: 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
L SRC++FRF PL E + + + E+E V A+++LV S GDMRRA+ LQ+
Sbjct: 196 PALLSRCTRFRFSPLHEQDIRVLVDKVIEEEGVKIMPDAVDSLVRLSKGDMRRALNVLQA 255
Query: 242 CA------RLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLI------- 288
C + + G I +D++ T I I + ++K + L+
Sbjct: 256 CHASSTPLQPRDGPKIPEQDIVRET--ITTETIYNCVAAPPPDAIKKILSTLLSTSDVTS 313
Query: 289 -------LEAYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDGASEYIQ 339
L+A L D + L K + +I LE LA+ R+ GASE IQ
Sbjct: 314 CLSTINTLKAAQGLALADIITALSEELVKLEVKPQVMITWLETLADVEHRVSSGASEAIQ 373
>gi|222478820|ref|YP_002565057.1| replication factor C small subunit [Halorubrum lacusprofundi ATCC
49239]
gi|222451722|gb|ACM55987.1| Replication factor C [Halorubrum lacusprofundi ATCC 49239]
Length = 327
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/310 (39%), Positives = 180/310 (58%), Gaps = 17/310 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD- 93
W+EKYRP+++DD+ Q+ +V L+ + D+PH LF GP GTGKT+ A Q++GD
Sbjct: 18 WIEKYRPQSLDDIHGQEAIVERLQSYIEQDDIPHLLFGGPAGTGKTTAATAIARQVYGDD 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ S F D F+IV LDEADS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFAR---SSFGGD------FRIVFLDEADSLTDEA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
QAALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + + + I E
Sbjct: 129 QAALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEG 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ LV + GDMRRAI LQ+ A GE + E V +T IE ++
Sbjct: 189 IEVTDEGVDALVYAADGDMRRAINSLQAAATT--GEIVDEEAVYAITATARPEEIESMVT 246
Query: 274 V---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
F ++ L+ E + + DQ H V LS+++ ++E++ E + R
Sbjct: 247 NALHGDFTRARATLDTLLTETGMAGGDVIDQLHRSVWE-FDLSEREAVALMERIGEADYR 305
Query: 330 LQDGASEYIQ 339
+ +GA+E +Q
Sbjct: 306 IAEGANEQVQ 315
>gi|448304145|ref|ZP_21494089.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
gi|445591898|gb|ELY46094.1| replication factor C small subunit [Natronorubrum sulfidifaciens
JCM 14089]
Length = 329
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 190/329 (57%), Gaps = 19/329 (5%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +D++ + +V L++ + DLPH +F GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDEIKGHENIVPRLQRYIEQDDLPHLMFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ + +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQSIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L+
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELS 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
E+ + +++ I E E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 EDAIEAQIREIAEIEGITVTDDGIDALVYAADGDMRKAINALQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPNPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSD 313
+T +E ++ +D F +EDL++E + + DQ H SA
Sbjct: 232 AITSTARPEEVEAMVDHAIDGDFTAARAALEDLLMERGLAGGDVIDQLH---RSAWEFDI 288
Query: 314 KQKALI--LEKLAECNARLQDGASEYIQI 340
++A + LE+L E + R+ +GA+E +Q+
Sbjct: 289 PEQATVRLLERLGEVDYRITEGANERLQL 317
>gi|307110140|gb|EFN58376.1| hypothetical protein CHLNCDRAFT_59565 [Chlorella variabilis]
Length = 340
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 124/319 (38%), Positives = 187/319 (58%), Gaps = 19/319 (5%)
Query: 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91
P+PWVEKYRP I D++ E VS L+ ++P+ + GPPGTGKT++++ H+L
Sbjct: 21 PLPWVEKYRPTRIKDIVGNVEAVSRLQIIAEEGNMPNIILAGPPGTGKTTSILCLAHELL 80
Query: 92 GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
G +RE +LELNASDDRGI V+R+K+K FAQQ + P KIVILDEADSMT
Sbjct: 81 GPNFREAVLELNASDDRGIDVVRNKIKMFAQQKVT------LPLGRHKIVILDEADSMTS 134
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME + +TRF L CN S II+P+ SRC+ R+ L++ +L RL ++C++
Sbjct: 135 GAQQALRRTMEIYSSTTRFALACNQSSKIIEPIQSRCAIVRYSKLSDKELLQRLLHVCQE 194
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E V LE +V T+ GDMR+A+ +Q+ A G G+V++D + P+P L
Sbjct: 195 EGVAHTPDGLEAVVFTADGDMRQALNNVQATA---NGFGLVSQDHVFRVCDQPHPV---L 248
Query: 272 LKVDSFQVLEKYIED-------LILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
+ L+ I+D L YSA+ + +V + + +++ K ++++
Sbjct: 249 VSSVVRHCLDARIDDAYEGLRALCDMGYSASDIITILFRVVRNFTGMNEYLKLEYIKQIG 308
Query: 325 ECNARLQDGASEYIQILDL 343
C+ R+ DG + +Q+ L
Sbjct: 309 FCHMRVGDGVNSRLQLSGL 327
>gi|294873159|ref|XP_002766534.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
gi|239867474|gb|EEQ99251.1| replication factor C3, putative [Perkinsus marinus ATCC 50983]
Length = 354
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 123/312 (39%), Positives = 178/312 (57%), Gaps = 8/312 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPKT+DD++ QE++ +K+ + LPH L +GPPGTGKTST++A Q++
Sbjct: 28 LPWVEKYRPKTLDDLVAHQEIIETIKRFVKMNALPHLLLHGPPGTGKTSTILACARQMYP 87
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
R+ +LELNASD RGI V+R+ +K F + G P K+VILDEAD+MT
Sbjct: 88 PGQLRQYVLELNASDARGIDVVRECIKQFVSSRSMFSGSLGTNMP--KLVILDEADNMTS 145
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
+Q ALRR +E+ + + RFCLICNY S II L SRC+KFRF PL + R+ Y+ +
Sbjct: 146 VSQFALRRVIEQYSSNARFCLICNYASKIIPALQSRCTKFRFAPLKDAEARMRVDYVAKC 205
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E V + L+ T GDMR+ + LQSC + + +V G+ I++L
Sbjct: 206 EGVKISEDGMLALLRTGEGDMRKVLNTLQSCTLSYPSHTVDANIIHKVAGLPETSTIDRL 265
Query: 272 LKVDSFQVLEK---YIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
V + L + IE+L + YS L + HD +++ + + + L+ LAE
Sbjct: 266 EAVLCQKPLREGMMVIEELRVKHGYSVADLLREIHDRMVTV-DMPPRARNLLFRDLAEIE 324
Query: 328 ARLQDGASEYIQ 339
RL G SE +Q
Sbjct: 325 YRLSSGCSEKVQ 336
>gi|71028744|ref|XP_764015.1| replication factor C subunit 3 [Theileria parva strain Muguga]
gi|68350969|gb|EAN31732.1| replication factor C subunit 3, putative [Theileria parva]
Length = 347
Score = 221 bits (564), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 189/322 (58%), Gaps = 11/322 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ D+I ++++S L LPH LF+GPPG+GKTST++A L+G
Sbjct: 8 PWVEKYRPETLQDIISHEDIMSTLMIFAEKGQLPHLLFHGPPGSGKTSTILAISRYLYGS 67
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ----DGKPCPPFKIVILDEADSM 149
+LELNASD+RGI +RD++K F++ T++ F D P K++ILDEAD M
Sbjct: 68 QRNGFVLELNASDERGIDTVRDQIKAFSE-TSNTFTSTMPVDDPPRTNLKLIILDEADQM 126
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+AAQ ALRR ME + + RFCLICN+++ II P+ SRC+ FRF+PL + + R++ I
Sbjct: 127 TNAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKSDVVRERIREIA 186
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQ--SCARLKGGEGIVNEDVLEVTGVIP-NP 266
+ E+V AL+ LVE GDMRR + CLQ S + KG + ++ +++ T +P +
Sbjct: 187 KLENVKITDCALDALVEIGQGDMRRVLNCLQVTSMSHAKGADFTIDANLILATSGLPQSS 246
Query: 267 WIEKLLKVDSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALI--LEKL 323
I+ LLK ++ I +L +L L D + S + ++ L +L
Sbjct: 247 EIDHLLKSLMQNSFKECIYELSVLHHKKGYSLEDIVRLLYKSIVKIDWPNVPIVQLLIRL 306
Query: 324 AECNARLQDGASEYIQILDLGS 345
A+ RL GA+ IQI + S
Sbjct: 307 ADVEERLAAGANSNIQIASIVS 328
>gi|171185161|ref|YP_001794080.1| replication factor C small subunit [Pyrobaculum neutrophilum
V24Sta]
gi|170934373|gb|ACB39634.1| Replication factor C [Pyrobaculum neutrophilum V24Sta]
Length = 319
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 104/210 (49%), Positives = 141/210 (67%), Gaps = 10/210 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV S L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVRSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC-PPFKIVILDEADSMTHAA 153
+RE LELNASD+RGI VIR++VK FA+ P PFK+VILDEAD+MT A
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTA---------PIKAPFKLVILDEADNMTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME ++TRF L+ NYVS II+P+ SR RF PL ++ ++ RL+YI E E
Sbjct: 117 QQALRRIMEIYAQNTRFILLANYVSGIIEPIQSRVVMVRFNPLPKDAVIARLRYIAENEG 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ ALET+ E + GDMR+AI LQ A
Sbjct: 177 IKASDDALETIFEFTQGDMRKAINALQIAA 206
>gi|429191613|ref|YP_007177291.1| DNA polymerase III, subunit gamma/tau [Natronobacterium gregoryi
SP2]
gi|448325250|ref|ZP_21514645.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
gi|429135831|gb|AFZ72842.1| DNA polymerase III, gamma/tau subunit [Natronobacterium gregoryi
SP2]
gi|445616034|gb|ELY69670.1| replication factor C small subunit [Natronobacterium gregoryi SP2]
Length = 330
Score = 221 bits (564), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 193/329 (58%), Gaps = 19/329 (5%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +D++ + +V LK+ + DLPH +F GP G
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGV 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT++ A +++GD ++E LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTASAQAIAREVYGDDWKENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELG 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ + T+++ I E++ ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 DDAVETQIREIAATETIELTDNGVDALVYAADGDMRKAINGLQAAAVM--GEVVDEETVF 231
Query: 258 EVTGVIPNPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSD 313
+T +E++++ +D F +EDL+++ + + DQ H SA
Sbjct: 232 AITSTARPEEVEEMVEHAIDGDFTAARAALEDLLMDRGLAGGDVIDQLH---RSAWEFDI 288
Query: 314 KQKALI--LEKLAECNARLQDGASEYIQI 340
++A + LE+L E + R+ +GA+E +Q+
Sbjct: 289 PERATVRLLERLGEVDYRITEGANERLQL 317
>gi|119182767|ref|XP_001242497.1| hypothetical protein CIMG_06393 [Coccidioides immitis RS]
gi|392865396|gb|EAS31179.2| activator 1 subunit 3 [Coccidioides immitis RS]
Length = 398
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 143/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + + + LPH L YGPPGTGKTST++A Q++G
Sbjct: 43 LPWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYG 102
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA + + Q G FK++ILDEAD
Sbjct: 103 VKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLIILDEAD 162
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AAQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 163 AMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVDQ 222
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V A+++LV S GDMRRA+ LQ+C
Sbjct: 223 VIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQAC 257
>gi|300709601|ref|YP_003735415.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|448297629|ref|ZP_21487674.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|299123284|gb|ADJ13623.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
gi|445578957|gb|ELY33355.1| replication factor C small subunit [Halalkalicoccus jeotgali B3]
Length = 329
Score = 221 bits (563), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 182/310 (58%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP T+ +VI Q+E+ L++ + DLP+ LF G G GKT+ A +++G+
Sbjct: 18 WVEKYRPGTLGEVIGQEEITDRLERYVERDDLPNLLFSGSAGIGKTTCATAIAREVYGED 77
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ LELNASDDRGI V+R ++K FA+ + G++ ++I+ LDEADS+T AQ
Sbjct: 78 WRDNFLELNASDDRGIDVVRGRIKEFARASFGGYS--------YRIIFLDEADSLTSDAQ 129
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF P+++ + R++ I E +
Sbjct: 130 SALRRTMEQFSSNTRFILSCNYSSKIIDPIQSRCAVFRFSPISDAAVGERIREIAHIEGI 189
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
+E LV + GDMRRA+ LQ+ A + GE + E V +T IE ++
Sbjct: 190 EITDGGVEALVYAADGDMRRAVNSLQAAAVM--GETVDEEVVYTITATARPEEIEAMVTS 247
Query: 275 ---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
F ++DL+ + S + DQ H V LSD++ L+++ E + R+
Sbjct: 248 ALEGDFTTARATLDDLLSNKGLSGGDIIDQLHRSVWDL-GLSDREAVRTLDRIGETDYRI 306
Query: 331 QDGASEYIQI 340
+GA+E IQ+
Sbjct: 307 TEGANERIQL 316
>gi|303319413|ref|XP_003069706.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
gi|240109392|gb|EER27561.1| Activator 1 subunit 3 , putative [Coccidioides posadasii C735 delta
SOWgp]
Length = 398
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 143/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + + + LPH L YGPPGTGKTST++A Q++G
Sbjct: 43 LPWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYG 102
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA + + Q G FK++ILDEAD
Sbjct: 103 VKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSKLGAFKLIILDEAD 162
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AAQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 163 AMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVDQ 222
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V A+++LV S GDMRRA+ LQ+C
Sbjct: 223 VIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQAC 257
>gi|448445134|ref|ZP_21590189.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
gi|445685440|gb|ELZ37794.1| replication factor C small subunit [Halorubrum saccharovorum DSM
1137]
Length = 328
Score = 221 bits (563), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 179/310 (57%), Gaps = 17/310 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP+++DD+ Q+E+V L+ + D+PH LF GP G GKT+ A Q++G D
Sbjct: 18 WIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTAATAIARQVYGED 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ + G F+IV LDEADS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG---------DFRIVFLDEADSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + + + I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVAAQTREIAAAEG 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 189 IEVTDEGVDALVYAADGDMRRAINSLQAAATT--GDVVDEEAVYAITATARPEEIESMVT 246
Query: 274 ---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
F ++ L+ E + + DQ H V LS+++ ++E++ E + R
Sbjct: 247 NALEGDFSRARATLDTLLTETGMAGGDVIDQLHRSVWE-FDLSEREAVALMERIGEADYR 305
Query: 330 LQDGASEYIQ 339
+ +GA+E +Q
Sbjct: 306 IAEGANEQVQ 315
>gi|366988323|ref|XP_003673928.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
gi|342299791|emb|CCC67547.1| hypothetical protein NCAS_0A09890 [Naumovozyma castellii CBS 4309]
Length = 336
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 105/212 (49%), Positives = 145/212 (68%), Gaps = 7/212 (3%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP+T+DDV Q EVV+ ++K L+ LPH LFYGPPGTGKTST++A +
Sbjct: 10 NDNLPWVEKYRPETLDDVYGQTEVVTTVRKFLAEGKLPHLLFYGPPGTGKTSTIVALARE 69
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
++G Y +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+M
Sbjct: 70 IYGRNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKLIILDEADAM 122
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+AAQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL + R+ +
Sbjct: 123 TNAAQNALRRIIEKYTKNTRFCILANYSHKLTPALLSRCTRFRFQPLPREAIEMRIANVL 182
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQS 241
E++ +A E L+ S GDMRR + LQ+
Sbjct: 183 VHENLKLSDEAKEALITLSQGDMRRVLNVLQA 214
>gi|255710491|ref|XP_002551529.1| KLTH0A01540p [Lachancea thermotolerans]
gi|238932906|emb|CAR21087.1| KLTH0A01540p [Lachancea thermotolerans CBS 6340]
Length = 328
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 187/319 (58%), Gaps = 26/319 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW+EKYRP+T+DDV Q+E+V ++K + LPH LFYGPPGTGKTS ++A +++G
Sbjct: 8 LPWIEKYRPQTLDDVYGQREIVGTVRKFVKEGRLPHLLFYGPPGTGKTSMIVALSREIYG 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT+A
Sbjct: 68 TNYRNMVLELNASDDRGIDVVRNQIKEFA-STRQIFSKG------FKLIILDEADAMTNA 120
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL + + R+ + E
Sbjct: 121 AQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPTDAIEKRVNKVLILE 180
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQ-SCARLKGGEGIVNED-VLEVTGVIPNPW--- 267
++ +A L+ S GDMRRA+ LQ S A L + V ED + E G P+P
Sbjct: 181 NLKLSREAFTALLRLSKGDMRRALNVLQASKATLDDPDAEVTEDTIYECIGA-PHPQDIE 239
Query: 268 --IEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIV--MSASSLSDKQKALIL 320
+E +LK D +F + K + L D IV + L + + +L
Sbjct: 240 TALESMLKDDWSTAFFTVNK------IRTLKGLALIDLVEGIVETLEGYELKPETRVELL 293
Query: 321 EKLAECNARLQDGASEYIQ 339
KL++ + G ++ +Q
Sbjct: 294 CKLSDIEYAMSKGGNDKVQ 312
>gi|320040847|gb|EFW22780.1| DNA replication factor C subunit [Coccidioides posadasii str.
Silveira]
Length = 398
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 105/215 (48%), Positives = 143/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + + + LPH L YGPPGTGKTST++A Q++G
Sbjct: 43 LPWVEKYRPSTLDDVSGHQDIIATINRFIESNRLPHLLLYGPPGTGKTSTILALARQIYG 102
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA + + Q G FK++ILDEAD
Sbjct: 103 VKNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMTPGGQAGSNLGAFKLIILDEAD 162
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AAQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 163 AMTAAAQMALRRIMEKYTANTRFCIIANYTHKLTPALLSRCTRFRFSPLKEQDIRVLVDQ 222
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V A+++LV S GDMRRA+ LQ+C
Sbjct: 223 VIEKEQVRIQPDAIDSLVRLSKGDMRRALNVLQAC 257
>gi|328855833|gb|EGG04957.1| hypothetical protein MELLADRAFT_72257 [Melampsora larici-populina
98AG31]
Length = 349
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 128/341 (37%), Positives = 196/341 (57%), Gaps = 20/341 (5%)
Query: 7 TGKLGKDAPSSSKTSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD 65
+G AP+ K++ ++SGK ++ + +PWVEKYRP +DD+ E + LK +
Sbjct: 2 SGSTSTAAPA--KSNGTSSGKKKSSEDIPWVEKYRPIILDDITGNVETIERLKVIARDGN 59
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA 125
PH + G PG GKT++++ H L GD Y+E +LELNASD+RGI V+R+K+KTFA
Sbjct: 60 CPHIIISGAPGIGKTTSILCLAHALLGDSYKEGVLELNASDERGIDVVRNKIKTFANTKV 119
Query: 126 SGFNQDGKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
+ PP KI+ILDEADSMT AQ ALRRTME STRF L CN+ S II+P
Sbjct: 120 T--------LPPGRHKIIILDEADSMTSGAQQALRRTMEIYANSTRFALACNFSSKIIEP 171
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
+ SRC+ R+ L++ +L RL IC+ E+V + L ++ T+ GDMR+AI LQS
Sbjct: 172 IQSRCAILRYGKLSDQEILKRLVEICDAENVKYANEGLAAIIFTAEGDMRQAINNLQST- 230
Query: 244 RLKGGEGIVNEDVLEVTGVIPNPWIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFD 299
+ G E + +E V +V P+P + K L + Q + +++L + YSA +
Sbjct: 231 -VSGFEFVSSEAVFKVCDQ-PHPIVIKQLLAACEKGEVQTALESLDELWTQGYSAIDIVT 288
Query: 300 QFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
+V S +++ K ++++ + R+ +G S +Q+
Sbjct: 289 TLSKVVKSMDKMAEYIKLEFIKEIGYTHMRILEGVSTIVQL 329
>gi|195434144|ref|XP_002065063.1| GK15259 [Drosophila willistoni]
gi|194161148|gb|EDW76049.1| GK15259 [Drosophila willistoni]
Length = 331
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 135/325 (41%), Positives = 185/325 (56%), Gaps = 28/325 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+I +E+VS + + + LPH LFYGPPGTGKTST++A QL+
Sbjct: 10 IPWVEKYRPNNLEDLISHEEIVSTINRFIGQKQLPHLLFYGPPGTGKTSTILACARQLYT 69
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 70 PAQFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CGTFKLIILDEADAMTN 122
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++ RFC+ICNY+S II L SRC++FRF PL+ ML RL I E
Sbjct: 123 DAQNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLDKIVEA 182
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP-----NP 266
E+V + L+ + GDMR+ + LQS + E VNE+ + + P
Sbjct: 183 EAVTITDDGKKALLTLAKGDMRKVLNVLQSTV-MAFNE--VNENNVYMCVGYPLKQDTEQ 239
Query: 267 WIEKLLKVDSFQVLEKYIED------LILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
+ LL +SF+ K IED L LE + + H VM LI+
Sbjct: 240 ILNALLSGESFKAAFKTIEDAKSRRGLALE-----DILTELHLFVMRLELPMSVMNKLII 294
Query: 321 EKLAECNARLQDGASEYIQILDLGS 345
KLA+ RL G +E QI L S
Sbjct: 295 -KLAQIEERLSKGCTEGAQIAALVS 318
>gi|448683820|ref|ZP_21692440.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
gi|445783393|gb|EMA34222.1| replication factor C small subunit [Haloarcula japonica DSM 6131]
Length = 325
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 179/310 (57%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVADEIRNIAAEEDI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQS 245
Query: 274 -VDSFQVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D + D +L E + + DQ H + + D+ +LE++ E + R+
Sbjct: 246 ALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDEAAVRVLERIGETDYRI 304
Query: 331 QDGASEYIQI 340
GA+E +Q+
Sbjct: 305 TRGANERVQL 314
>gi|325186526|emb|CCA21065.1| replication factor C subunit 5 putative [Albugo laibachii Nc14]
Length = 354
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 133/326 (40%), Positives = 188/326 (57%), Gaps = 24/326 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP +DD+I + +VS + + + LPH LFYGPPGTGKTS +IA +++G
Sbjct: 33 PWVEKYRPSRMDDIIAHKGIVSTINQLVEKQKLPHLLFYGPPGTGKTSMIIAIARKIYGK 92
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+ +LELNASDDRGI V+R+++K FA T F+ K++ILDEADSMT+ A
Sbjct: 93 HFSSMVLELNASDDRGIDVVRNQIKEFA-GTKKLFSSGA------KLIILDEADSMTNDA 145
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q +LRR +EK TK TRFCLICNYVS II L SRC +FRF PL + R++ I + E
Sbjct: 146 QFSLRRVIEKYTKHTRFCLICNYVSKIIPALQSRCMRFRFAPLGVTQVGDRVKQIRDLEK 205
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEKLL 272
+ + L++ GDMRR + LQ+ + VN E+V TG NP E +
Sbjct: 206 IDLTDGGFDALMQLGKGDMRRILNILQAASL---AYATVNEENVYLCTG---NPVPEDIA 259
Query: 273 KV------DSF-QVLEKYIEDLILEAYSATQLFDQ-FHDIVMSASSLSDKQKALILEKLA 324
+ DSF + + K + + Y+ T + + +H+ + L K + I ++LA
Sbjct: 260 AICHSLWNDSFAEAVSKCQAIQMTKGYATTDIMKEVYHN--TTEVDLPAKCQHFIYDELA 317
Query: 325 ECNARLQDGASEYIQILDLGSIVIKA 350
+ RL GASE +Q++ L SI A
Sbjct: 318 KLEHRLATGASEKLQLISLVSIYFMA 343
>gi|48477659|ref|YP_023365.1| replication factor C small subunit [Picrophilus torridus DSM 9790]
gi|50400868|sp|Q6L1I0.1|RFCS_PICTO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|48430307|gb|AAT43172.1| replication factor C, small subunit [Picrophilus torridus DSM 9790]
Length = 318
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 181/313 (57%), Gaps = 21/313 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK +DDVI + E ++ LK + DLPH +F GP GTGKTST IA +LFGD
Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++E LELNASD+RGI +IR+ +K FA+ S N+ G FKI+ LDEAD +T+ AQ
Sbjct: 65 WKENFLELNASDERGIDIIRNNIKDFAKIRPS--NKLG-----FKIIFLDEADQLTNEAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +TRF CNY S II P+ SRC RF+PL + M +L+ I + E
Sbjct: 118 AALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKF 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
D +L+ + E S GDMR+AI +Q+ GE I + E++G I + L+ +
Sbjct: 178 DIDDDSLDAIYEISDGDMRKAINVMQAIQ--STGE-IKPSKIYEISGEINKNEYKNLISL 234
Query: 275 -------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
D+ +L+K + D L S + H + + ++++QK IL LAE
Sbjct: 235 SLNGAFSDAKSLLDKMLVDYGL---SGIDIIRGMHSAIRN-ERIANRQKLEILIALAEFE 290
Query: 328 ARLQDGASEYIQI 340
R+ G S+ +Q+
Sbjct: 291 FRISQGGSDNVQM 303
>gi|448638308|ref|ZP_21676281.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|448655209|ref|ZP_21682061.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
gi|445763557|gb|EMA14744.1| replication factor C small subunit [Haloarcula sinaiiensis ATCC
33800]
gi|445765658|gb|EMA16796.1| replication factor C small subunit [Haloarcula californiae ATCC
33799]
Length = 325
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 179/310 (57%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQS 245
Query: 274 -VDSFQVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D + D +L E + + DQ H + + D+ +LE++ E + R+
Sbjct: 246 ALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDEAAVRVLERIGETDYRI 304
Query: 331 QDGASEYIQI 340
GA+E +Q+
Sbjct: 305 TRGANERVQL 314
>gi|195628076|gb|ACG35868.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 181/321 (56%), Gaps = 29/321 (9%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+ PWVEKYRP+++ DV +++V + + + LPH L YGPPGTGKTST++A +L
Sbjct: 37 RAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 96
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G Y ILELNASD+RGI V+R +++ FA + F P K+V+LDEAD+MT
Sbjct: 97 YGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR----PSVKLVLLDEADAMT 152
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR +EK T+STRF LICN+V+ II L SRC++FRF PL + + RLQ+I +
Sbjct: 153 KDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIK 212
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW--- 267
E + D L LV S GDMR+A+ LQS + I E V TG NP
Sbjct: 213 SEGLSVDDGGLTALVRLSNGDMRKALNILQSTH--MASQQITEEAVYLCTG---NPMPKD 267
Query: 268 IEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL---SDKQKALILE 321
IE++ L + F KYI D+ + L D ++ M + SD + LI
Sbjct: 268 IEQIAFWLLNEPFSTSFKYISDMKMR--KGLALVDIIREVTMFVFKIQMPSDVRVKLI-N 324
Query: 322 KLAE--------CNARLQDGA 334
LA+ CN +LQ GA
Sbjct: 325 NLADIEYRLSFACNDKLQLGA 345
>gi|195051153|ref|XP_001993043.1| GH13305 [Drosophila grimshawi]
gi|193900102|gb|EDV98968.1| GH13305 [Drosophila grimshawi]
Length = 332
Score = 221 bits (562), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 129/320 (40%), Positives = 183/320 (57%), Gaps = 18/320 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + ++ LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 LPWVEKYRPNCLDDLISHEEIISTITRFINQKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 SAHFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CGTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++ RFC+ICNY+S II L SRC++FRF PL+ ML RL I ++
Sbjct: 124 DAQNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSAEQMLPRLNQIVQE 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP-----NP 266
E V L+ S GDMR+ + LQS + IVNED + + P
Sbjct: 184 EHVNVTDDGKNALLTLSKGDMRKVLNVLQSTSM---AFDIVNEDNVYMCVGYPLRSEIEH 240
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQKALILEKLAE 325
++ LL +F+ IE+ + A + + + H +M LI+ KLA+
Sbjct: 241 MLQTLLSAATFESAYDTIEEAKTKRGLALEDIVTELHLFIMRLELPMSVMNKLIV-KLAQ 299
Query: 326 CNARLQDGASEYIQILDLGS 345
RL G +E Q L S
Sbjct: 300 VEERLSKGCTEKAQTAALVS 319
>gi|410075631|ref|XP_003955398.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
gi|372461980|emb|CCF56263.1| hypothetical protein KAFR_0A08290 [Kazachstania africana CBS 2517]
Length = 332
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 136/345 (39%), Positives = 190/345 (55%), Gaps = 34/345 (9%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
+G +PWVEKYRP T+DDV Q+E+V ++K + LPH LFYGPPGTGKTST+I
Sbjct: 2 NGSKDRSNLPWVEKYRPVTLDDVYGQKEIVGTVRKFVEEGKLPHLLFYGPPGTGKTSTII 61
Query: 85 AACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144
A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK++ILD
Sbjct: 62 ALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKEFA-STRQIFSKG------FKLIILD 114
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EAD+MT+AAQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL + + TR
Sbjct: 115 EADAMTNAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPSDAIETR 174
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ-SCARLK--GGEGIVNEDVLEVTG 261
+ + E++ + A L++ S GDMRR + LQ S A L E I ++ + E G
Sbjct: 175 IANVLVHENLKLNDTAKRALLDLSKGDMRRVLNVLQASRATLDDPSNEEITDDIIYECVG 234
Query: 262 VIPNPWIEKLLKVDSFQVLEKYIEDLILEAY---------SATQLFDQFHDIVMSASSLS 312
P P D VL+ +ED AY L D IV
Sbjct: 235 A-PRPE-------DLETVLKSILEDDWSTAYYTLTKVRTMKGLALIDLIEGIVKILEEYE 286
Query: 313 DKQKAL---ILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
K + +L +L + + G ++ IQ S VI A KT+
Sbjct: 287 LKNEVTRIELLTRLGDIEYAISKGGNDKIQ----SSAVIGAIKTS 327
>gi|282164500|ref|YP_003356885.1| replication factor C small subunit [Methanocella paludicola SANAE]
gi|282156814|dbj|BAI61902.1| replication factor C small subunit [Methanocella paludicola SANAE]
Length = 332
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 182/310 (58%), Gaps = 14/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+D+VI Q+++V LK + +LPH LF GPPG GKT+ +A +FGD
Sbjct: 17 WTEKYRPKTLDEVIGQEQIVRRLKSYVKTGNLPHLLFSGPPGVGKTACAVALAKDMFGDT 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ ELNASD+RGI V+R+ +K FA+ G D + FKI+ LDEAD++T AQ
Sbjct: 77 WQNNFTELNASDERGIDVVRNNIKNFARTAPLG---DAR----FKIIFLDEADALTSDAQ 129
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ T + RF + CNY S II+P+ SRC+ +RF PL + T + I + E +
Sbjct: 130 SALRRTMERYTATCRFIISCNYSSKIIEPIQSRCAVYRFGPLGPKDIETMARRIEKGEGI 189
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
L+ ++ + GDMRRA+ LQS + + + I E V E T IE++LK+
Sbjct: 190 KITKDGLDAIIYVARGDMRRAVNALQSASTVS--KDITAEAVYETTSTARPKEIEEMLKL 247
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
F ++DL+++ S + + DQ + + S D AL+ +++ E + RL
Sbjct: 248 ALNGQFMDSRNKLDDLLIKYGLSGSDIIDQIYASMFSLGLDEDVLVALV-DRIGEADFRL 306
Query: 331 QDGASEYIQI 340
+G +E IQ+
Sbjct: 307 TEGGNERIQV 316
>gi|219363377|ref|NP_001136580.1| replication factor C subunit 3 [Zea mays]
gi|194696262|gb|ACF82215.1| unknown [Zea mays]
gi|413939151|gb|AFW73702.1| replication factor C subunit 3 [Zea mays]
Length = 362
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 133/321 (41%), Positives = 181/321 (56%), Gaps = 29/321 (9%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+ PWVEKYRP+++ DV +++V + + + LPH L YGPPGTGKTST++A +L
Sbjct: 37 RAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 96
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G Y ILELNASD+RGI V+R +++ FA + F P K+V+LDEAD+MT
Sbjct: 97 YGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR----PSVKLVLLDEADAMT 152
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR +EK T+STRF LICN+V+ II L SRC++FRF PL + + RLQ+I +
Sbjct: 153 KDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIK 212
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW--- 267
E + D L LV S GDMR+A+ LQS + I E V TG NP
Sbjct: 213 SEGLSVDDGGLTALVRLSNGDMRKALNILQSTH--MASQQITEEAVYLCTG---NPMPKD 267
Query: 268 IEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL---SDKQKALILE 321
IE++ L + F KYI D+ + L D ++ M + SD + LI
Sbjct: 268 IEQIAFWLLNEPFSTSFKYISDMKMR--KGLALVDIIREVTMFVFKIQMPSDVRVKLI-N 324
Query: 322 KLAE--------CNARLQDGA 334
LA+ CN +LQ GA
Sbjct: 325 DLADIEYRLSFACNDKLQLGA 345
>gi|448680330|ref|ZP_21690647.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
gi|445768774|gb|EMA19851.1| replication factor C small subunit [Haloarcula argentinensis DSM
12282]
Length = 325
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 178/310 (57%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQS 245
Query: 274 -VDSFQVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D + D +L E + + DQ H + + D +LE++ E + R+
Sbjct: 246 ALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIGDDAAVRVLERIGETDYRI 304
Query: 331 QDGASEYIQI 340
GA+E +Q+
Sbjct: 305 TRGANERVQL 314
>gi|383319632|ref|YP_005380473.1| replication factor C small subunit [Methanocella conradii HZ254]
gi|379321002|gb|AFC99954.1| replication factor C small subunit [Methanocella conradii HZ254]
Length = 322
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 123/311 (39%), Positives = 184/311 (59%), Gaps = 16/311 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+DDVI Q+++V LK + +LPH LF GPPG GKT+ +A +FGD
Sbjct: 7 WTEKYRPKTLDDVIGQEQIVRRLKSYVKSGNLPHLLFSGPPGVGKTACAVALAKDMFGDA 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ +ELNASD+RGI+V+R+ +K FA+ + G + FK++ LDEAD++T AQ
Sbjct: 67 WQNNFIELNASDERGIEVVRNNIKNFARTSPLGEAR-------FKVIFLDEADALTADAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ T + RF + CNY S II+P+ SRC+ +RF L + T ++ I + E +
Sbjct: 120 SALRRTMERYTATCRFIISCNYSSKIIEPIQSRCAIYRFGLLGPKDVETMVRRIEKGEHI 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-WIEKLLK 273
LE L+ + GDMRRAI LQS + + V DV+ T I P IE +LK
Sbjct: 180 KVSPDGLEALIYVARGDMRRAINALQSASTVTKH---VTADVVFETMSIARPKEIEDMLK 236
Query: 274 V---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ F ++DL+++ S + DQ + M A L + +++++ E + R
Sbjct: 237 LALNGQFMDARNKLDDLLIKYGLSGNDVVDQIYS-AMFALGLDEGVLVDLVDRIGEADFR 295
Query: 330 LQDGASEYIQI 340
L +GA+E IQ+
Sbjct: 296 LTEGANERIQV 306
>gi|145343698|ref|XP_001416450.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
gi|144576675|gb|ABO94743.1| replication factor C subunit 5 (36kDa), probable [Ostreococcus
lucimarinus CCE9901]
Length = 332
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 127/308 (41%), Positives = 176/308 (57%), Gaps = 19/308 (6%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N+ +PW EKYRP + +V+ + +V V+ K G LPH LF+GPPGTGKTST++A +
Sbjct: 10 NRALPWTEKYRPVGLSEVVAHKAIVDVINKFADGGQLPHLLFHGPPGTGKTSTILALAKE 69
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
L+G + +LELNASD RGI V+RD++++FA T F+ FK+VI+DE DSM
Sbjct: 70 LYGLNFSNMVLELNASDARGINVVRDEIQSFAS-TMRPFST------TFKLVIMDECDSM 122
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ ALRR MEK T+ TRFCLICNY S +I L SRC+KFRF P+A ML RL++I
Sbjct: 123 TKDAQFALRRIMEKYTQHTRFCLICNYASKVIPALQSRCTKFRFSPIASGDMLQRLRHIV 182
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE-VTGVIPNPWI 268
E+ +L T+ + GDMR+ + LQS + +V +D + +TG + +
Sbjct: 183 NSENFSISDNSLATIQKLGEGDMRKTVNILQSVSL---SASVVTDDAIHLITGHVGQLQV 239
Query: 269 EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
++LL+ + L+ E TQ F DIV S + L L A A
Sbjct: 240 DELLRFLLNEPLQGTFEH--FNRLKCTQNF-ALVDIVKPLS-----ESLLTLHMAAGTRA 291
Query: 329 RLQDGASE 336
RL G S+
Sbjct: 292 RLLRGLSD 299
>gi|346472797|gb|AEO36243.1| hypothetical protein [Amblyomma maculatum]
Length = 327
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 127/333 (38%), Positives = 190/333 (57%), Gaps = 29/333 (8%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
SGK +PWVEKYRP+ +DD+I ++++S + + + LPH LFYGPPGTGKTST++
Sbjct: 2 SGKEATSNLPWVEKYRPQKLDDLIAHEDIISTIGRFIKEDRLPHLLFYGPPGTGKTSTIL 61
Query: 85 AACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A Q++ + ++LELNASDDRGI ++R ++ +FA T + FN FK+++L
Sbjct: 62 ACAQQIYSPKEFTSKVLELNASDDRGIGIVRGEILSFAS-TKTIFNTG------FKLIVL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT+ AQ ALRR +EK T++ RFCLICNY+S II L SRC++FRF PL+ M
Sbjct: 115 DEADAMTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLSTAQMSP 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN---------- 253
R+ ++ QE + + L++ + GDMR+A+ LQS + N
Sbjct: 175 RIDHVITQERLTVTADGKKALMDLAQGDMRKALNILQSTSMAFSEVNETNVYLCVGQPLK 234
Query: 254 EDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLS 312
ED+ ++ + N + F +I L + A Q + Q H + + L
Sbjct: 235 EDISDIVSTLLN---------EDFTYCYSHISKLKVGKGLALQDVLTQVH-LYVHRIELP 284
Query: 313 DKQKALILEKLAECNARLQDGASEYIQILDLGS 345
D+ K +++K+AE RL G SE IQ+ L S
Sbjct: 285 DQVKMRLIDKMAEIEYRLAAGTSEKIQLSSLIS 317
>gi|327301329|ref|XP_003235357.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
gi|326462709|gb|EGD88162.1| DNA replication factor C subunit [Trichophyton rubrum CBS 118892]
Length = 397
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 144/213 (67%), Gaps = 3/213 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPDTLDDVSGHQDIIATINRFVDSNRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPCPPFKIVILDEADSM 149
R+ +LELNASDDRGI V+R+++KTFA +Q S G FK++ILDEAD+M
Sbjct: 105 SKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAM 164
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 165 TSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVI 224
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E+E V A+++LV+ S GDMRRA+ LQ+C
Sbjct: 225 EKEEVQIQPDAIDSLVKLSKGDMRRALNVLQAC 257
>gi|409083800|gb|EKM84157.1| hypothetical protein AGABI1DRAFT_110722 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 341
Score = 220 bits (561), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 134/344 (38%), Positives = 191/344 (55%), Gaps = 21/344 (6%)
Query: 17 SSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
S+ +T+G P +PWVEKYRPK +DDV+ + + LK + PH + G
Sbjct: 2 STSKGKATNGNAATDPYELPWVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGL 61
Query: 75 PGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
PG GKT+++ HQL GD Y+E +LELNASD+RGI+V+R K+K FAQ+ +
Sbjct: 62 PGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIEVVRTKIKQFAQKKVT-------- 113
Query: 135 CPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
PP KIVILDEADSMT AQ ALRRTME + +TRFCL CN + II+P+ SRC+ R
Sbjct: 114 LPPGRHKIVILDEADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILR 173
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
+ L + +L RL ICE+E V + L L+ TS GDMR+AI LQS G G V
Sbjct: 174 YAKLRDQEILKRLLEICEEEDVKYNDDGLTALIFTSEGDMRQAINNLQSTF---SGFGFV 230
Query: 253 NEDVLEVTGVIPNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS 307
+ D + P+P I LK D + L K I++L + YSA + +V +
Sbjct: 231 SGDNVFKICDQPHPIVVQAAIRSCLKGDVDEALGK-IKELWDQGYSAVDIVVTLFRVVKT 289
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
+ + K ++++ + R+ +G +Q+ L + + K N
Sbjct: 290 FDEVPEYTKLEFIKEIGFTHMRILEGVGTLVQLAGLVARLCKMN 333
>gi|195118794|ref|XP_002003921.1| GI18168 [Drosophila mojavensis]
gi|193914496|gb|EDW13363.1| GI18168 [Drosophila mojavensis]
Length = 332
Score = 220 bits (561), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 181/320 (56%), Gaps = 18/320 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + ++ LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 MPWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 PAHFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CGTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++ RFC+ICNY+S II L SRC++FRF PL+ M+ RL + E+
Sbjct: 124 DAQNALRRIIEKYTENVRFCIICNYLSKIIPALQSRCTRFRFAPLSPEQMMPRLNKVVEE 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEK 270
E+V + L+ + GDMR+ + LQS + +VNED V G IE
Sbjct: 184 ENVNITDDGKKALLTLAKGDMRKVLNVLQSTSM---AFDVVNEDNVYMCVGYPLRSEIEN 240
Query: 271 LLKVDSFQVLEKYIEDLILEAYSATQL-----FDQFHDIVMSASSLSDKQKALILEKLAE 325
+L+ D I EA S L + H +M LI+ KLAE
Sbjct: 241 VLQTLLSAATFDSAFDTIEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLII-KLAE 299
Query: 326 CNARLQDGASEYIQILDLGS 345
RL G SE Q L S
Sbjct: 300 IEERLTKGCSETAQTAALVS 319
>gi|57012999|sp|Q5UZE5.2|RFCS_HALMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 325
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 178/310 (57%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQS 245
Query: 274 -VDSFQVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D + D +L E + + DQ H + + D +LE++ E + R+
Sbjct: 246 ALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDDAAVRVLERIGETDYRI 304
Query: 331 QDGASEYIQI 340
GA+E +Q+
Sbjct: 305 TRGANERVQL 314
>gi|357137885|ref|XP_003570529.1| PREDICTED: replication factor C subunit 5-like [Brachypodium
distachyon]
Length = 358
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 122/280 (43%), Positives = 163/280 (58%), Gaps = 15/280 (5%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
AP SK S + PWVEKYRP+++ DV +++V + + LPH L YG
Sbjct: 16 APPHSKGKAPLSAAAAVRSSPWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLLLYG 75
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PPGTGKTST++A +++G Y ILELNASD+RGI V+R +++ FA + F
Sbjct: 76 PPGTGKTSTILAVARKIYGSQYGNMILELNASDERGIGVVRQQIQDFASAHSLSFGAK-- 133
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
P K+V+LDEAD+MT AQ ALRR +EK T+STRF LICN+V+ II L SRC++FRF
Sbjct: 134 --PAVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRF 191
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
PL + + RLQ+I + E + D L LV S GDMR+A+ LQS + I
Sbjct: 192 APLDGSHVSERLQHIIKSEGLDVDEGGLTALVRLSSGDMRKALNILQSTH--MASQQITE 249
Query: 254 EDVLEVTGVIPNPW---IEKL---LKVDSFQVLEKYIEDL 287
E V TG NP IE++ L + F KYI D+
Sbjct: 250 EAVYLCTG---NPMPKDIEQIAFWLLNEPFSTSFKYISDM 286
>gi|315049065|ref|XP_003173907.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
gi|311341874|gb|EFR01077.1| replication factor C protein subunit 3 [Arthroderma gypseum CBS
118893]
Length = 397
Score = 220 bits (560), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 105/213 (49%), Positives = 144/213 (67%), Gaps = 3/213 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPCPPFKIVILDEADSM 149
R+ +LELNASDDRGI V+R+++KTFA +Q S G FK++ILDEAD+M
Sbjct: 105 SKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAM 164
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 165 TSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIKRLVDTVI 224
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E+E V A+++LV+ S GDMRRA+ LQ+C
Sbjct: 225 EKEQVQIQPDAIDSLVKLSKGDMRRALNVLQAC 257
>gi|383849950|ref|XP_003700596.1| PREDICTED: replication factor C subunit 5-like [Megachile
rotundata]
Length = 329
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 129/330 (39%), Positives = 193/330 (58%), Gaps = 24/330 (7%)
Query: 17 SSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
S+K +ST+ +PWVEKYRPK +DD+I ++++ + K ++ LPH LFYGPPG
Sbjct: 2 SAKPMISTN-------LPWVEKYRPKKLDDLISHEDIIKTINKFINEDQLPHLLFYGPPG 54
Query: 77 TGKTSTMIAACHQLF-GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
TGKTST++A +L+ + +LE+NASDDRGI ++R ++ FA + + G
Sbjct: 55 TGKTSTILACARKLYTAGQFNSMVLEMNASDDRGIGIVRGQILNFA--STGTLYKSG--- 109
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
FK++ILDEAD+MT+ AQ ALRR +EK T + RFC+ICNY+S II L SRC+KFRF P
Sbjct: 110 --FKLIILDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGP 167
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L+ + +L RL+ I ++E++ E L+ SGGDMR+ + LQS G V E+
Sbjct: 168 LSSDQILPRLETIIKEENLNVSEDGKEALIALSGGDMRKVLNVLQSTWL---AFGTVTEE 224
Query: 256 VLEVTGVIPNPW----IEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASS 310
+ P P I L +S+++ I+D+ L+ A Q + Q H + ++
Sbjct: 225 TVYTCVGHPLPIDIKNIVNWLLNESYELCYCKIQDIKLKKGLALQDILTQLH-LFVNKIE 283
Query: 311 LSDKQKALILEKLAECNARLQDGASEYIQI 340
D ++ KLAE R+ G SE +Q+
Sbjct: 284 FPDSILIELIIKLAEIEKRVAIGCSEPVQL 313
>gi|146161442|ref|XP_001007155.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila]
gi|146146775|gb|EAR86910.2| hypothetical protein TTHERM_00213600 [Tetrahymena thermophila
SB210]
Length = 345
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 126/336 (37%), Positives = 194/336 (57%), Gaps = 21/336 (6%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-GADLPHFLFYGPPGTGKT 80
++ K + + +PWVEKYRP+ +D+VI + +V+ +KK + LP+ LFYGPPGTGKT
Sbjct: 7 ITVETKQKQQNIPWVEKYRPENLDNVISHEYIVATIKKFIEEDKKLPNLLFYGPPGTGKT 66
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
S ++A QL+G Y++ +LELNASDDRGI V+R+++KTFA + + F GK K+
Sbjct: 67 SLIVALAKQLYGKNYKQLVLELNASDDRGIDVVREQIKTFA--STANFGMVGKGT---KL 121
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEADSMT+ AQ ALRR +EK + + RFC+ICNYVS II L SRC++F+FK +
Sbjct: 122 IILDEADSMTNQAQFALRRIIEKYSSNARFCMICNYVSKIIPALQSRCTRFKFKHIPYQD 181
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG----IVNEDV 256
R+ IC E++ +E + + GDMRR + LQS + G I +E V
Sbjct: 182 AKLRIAQICNAENLKYKNSGIEAVFKLCDGDMRRVVNMLQSLSLQGYGSDEQVEITDELV 241
Query: 257 LEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 309
+ TG IE ++ +S+++++ Y + + S + + +M+ S
Sbjct: 242 YKFTGNATPKDIENIINTMNNKSISESYEIIQSY---QVEKGISLQVMLKEISLFLMNTS 298
Query: 310 SLSDKQKALILEKLAECNARLQDGASEYIQILDLGS 345
S + L+ ++LA+ R+ E +Q L L S
Sbjct: 299 YPSLALEFLV-KRLADLEYRMSINCDEKVQTLSLIS 333
>gi|403218101|emb|CCK72593.1| hypothetical protein KNAG_0K02300 [Kazachstania naganishii CBS
8797]
Length = 334
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 105/209 (50%), Positives = 144/209 (68%), Gaps = 7/209 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV Q E+VSVL K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 6 LPWVEKYRPSSLDDVYGQGEIVSVLHKFIQENRLPHLLFYGPPGTGKTSTIVALAREIYG 65
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y +LELNASDDRGI V+R+++K FA T F++ FK+VILDEAD+MT+A
Sbjct: 66 KNYSHMVLELNASDDRGIDVVRNQIKEFA-STRQIFSRG------FKLVILDEADAMTNA 118
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PL E+ + R+ + E
Sbjct: 119 AQNALRRIIEKYTKNTRFCILANYSHKLTPALQSRCTRFRFQPLPEDAIKRRIANVLVHE 178
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQS 241
+ A++ L++ S GDMRR + LQ+
Sbjct: 179 HLRVSEDAVQALIKLSKGDMRRVLNVLQA 207
>gi|356515902|ref|XP_003526636.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 361
Score = 220 bits (560), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 125/324 (38%), Positives = 184/324 (56%), Gaps = 20/324 (6%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRP+++DDV +++V + + + LPH L YGPPGTGKTST++A +L
Sbjct: 36 KAIPWVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKL 95
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G Y+ ILELNASDDRGI V+R +++ FA + F K+V+LDEAD+MT
Sbjct: 96 YGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSS----VKLVLLDEADAMT 151
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR +EK TKSTRF LICN+V+ II L SRC++FRF PL + RL+++ +
Sbjct: 152 KDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVIK 211
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
E + + L V S GDMR+A+ LQS + I E V TG NP + K
Sbjct: 212 AEGLDVEDSGLAAFVRLSNGDMRKALNILQSTH--MASQQITEEAVYLCTG---NP-LPK 265
Query: 271 LLKVDSFQVLEKYIEDLI-----LEAYSATQLFDQFHDIVMSAS--SLSDKQKALILEKL 323
+++ S+ +L + D ++ L D ++ M + + ++ L
Sbjct: 266 DIELISYWLLNEQFADSFKRIDEMKTRKGLALIDIVREVTMFVFKIKMPSAVRVQLMNDL 325
Query: 324 AECNARLQDGASEYIQILDLGSIV 347
A+ RL G ++ +Q LGS++
Sbjct: 326 ADIEYRLSFGCNDKLQ---LGSVI 346
>gi|354547265|emb|CCE43999.1| hypothetical protein CPAR2_502240 [Candida parapsilosis]
Length = 337
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 125/328 (38%), Positives = 193/328 (58%), Gaps = 22/328 (6%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
S K R+ +PWVEKYRP+ + +V QQ++VS +++ + LPH LFYGPPGTGKTST++
Sbjct: 2 SDKYRDN-LPWVEKYRPENLTEVYGQQDIVSTIRRFVETGKLPHLLFYGPPGTGKTSTIV 60
Query: 85 AACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144
A +++G Y+ +LELNASDDRGI V+R+++K+FA T F P FK++ILD
Sbjct: 61 ALAREIYGPNYKNMVLELNASDDRGIDVVRNQIKSFA-STRQIFTSSS--SPQFKLIILD 117
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EAD+MT AQ +LRR +EK TK+ RFC++ NY + L SRC++FRF P+ E + +R
Sbjct: 118 EADAMTSVAQNSLRRIIEKYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEAAIRSR 177
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI- 263
+ + +E V AL L++ S GDMRR++ LQ+C + G+ N + ++V +
Sbjct: 178 IDNVIIKEKVNITPDALNALLQLSQGDMRRSLNVLQAC-KAACGDDDDNSETIDVEMIYN 236
Query: 264 ----PNPW-----IEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 311
P+P ++ +LK D ++ L KY D + + L F DI ++ +
Sbjct: 237 CVGAPHPQDIETVLDSILKQDWTTAYMTLNKYKID---KGLALIDLITGFIDI-LNDYKV 292
Query: 312 SDKQKALILEKLAECNARLQDGASEYIQ 339
K + L+ L+E + G ++ IQ
Sbjct: 293 KPKTRIEYLKGLSEVEYGISKGGNDRIQ 320
>gi|242066704|ref|XP_002454641.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
gi|241934472|gb|EES07617.1| hypothetical protein SORBIDRAFT_04g034710 [Sorghum bicolor]
Length = 362
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/319 (41%), Positives = 182/319 (57%), Gaps = 25/319 (7%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+ PWVEKYRP+++ DV +++V + + + LPH L YGPPGTGKTST++A +L
Sbjct: 37 RAAPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 96
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G Y ILELNASD+RGI V+R +++ FA + F P K+V+LDEAD+MT
Sbjct: 97 YGSQYSNMILELNASDERGIDVVRQQIQDFAGARSLSFGAR----PSVKLVLLDEADAMT 152
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR +EK T+STRF LICN+V+ II L SRC++FRF PL + + RLQ+I +
Sbjct: 153 KDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGSHVRERLQHIIK 212
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG-VIPNPWIE 269
E + D L LV S GDMR+A+ LQS + I E V TG +PN IE
Sbjct: 213 SEGLSVDEGGLTALVRLSNGDMRKALNILQSTH--MASQQITEEAVYLCTGNPMPND-IE 269
Query: 270 KL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL---SDKQKALILEKL 323
++ L + F K+I D+ + L D ++ M + SD + LI L
Sbjct: 270 RIAFWLLNEPFSTSFKHISDMKMR--KGLALVDIIREVTMFVFKIEMPSDVRVKLI-NNL 326
Query: 324 AE--------CNARLQDGA 334
A+ CN +LQ GA
Sbjct: 327 ADIEYRLSFACNDKLQLGA 345
>gi|126459198|ref|YP_001055476.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
gi|126248919|gb|ABO08010.1| replication factor C small subunit [Pyrobaculum calidifontis JCM
11548]
Length = 324
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 154/239 (64%), Gaps = 9/239 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ ++V++ +EV + L++ + +LPH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGIGVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II+P+ SR RF PL + +++RL++I E E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSNIIEPIQSRVVMIRFNPLPKEAVISRLRFIAENEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
ALE + E + GDMR+AI LQ A + + E+V + G++ + ++L+
Sbjct: 179 KVSDDALEAIYEFTQGDMRKAINALQVAASV--SREVTEEEVAKALGMVSPRLLREVLQ 235
>gi|340377781|ref|XP_003387407.1| PREDICTED: replication factor C subunit 5-like [Amphimedon
queenslandica]
Length = 332
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 127/321 (39%), Positives = 186/321 (57%), Gaps = 20/321 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD+I +E+++ ++ L LPH LFYGPPGTGKTST++A +F
Sbjct: 5 LPWVEKYRPKNLDDLISHKEIINTIQHFLKEDRLPHLLFYGPPGTGKTSTILACAKTIFS 64
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI V+R +++FA T S F FK++ILDEAD+MT
Sbjct: 65 PAEIKSMVLELNASDDRGIDVVRGPIQSFAS-TRSIFRSG------FKLIILDEADAMTK 117
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +E T + RFCLICNY+S II L SRC++FRF PL+ M RLQ+I +
Sbjct: 118 DAQNALRRVIETYTDNVRFCLICNYLSKIIPALQSRCTRFRFGPLSMEQMSVRLQHIIRE 177
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP----- 266
E++ ++++V+ + GDMRR++ LQS + + + V TG P P
Sbjct: 178 ENINITDSGMDSVVKLAQGDMRRSLNILQSTS--MAYDTVDQRTVYLCTGQ-PLPEDIKQ 234
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
+E +L D +K IE I + + + + H +V K + +L+K++
Sbjct: 235 IVEWMLGEDFMTAYQKIIELKIEKGLALHDIITEIHHLVHRI-DFPAKVRLALLDKMSNI 293
Query: 327 NARLQDGASEYIQILDLGSIV 347
+ G SE IQ LG+++
Sbjct: 294 EYNVSTGTSERIQ---LGALI 311
>gi|409051889|gb|EKM61365.1| hypothetical protein PHACADRAFT_111883 [Phanerochaete carnosa
HHB-10118-sp]
Length = 342
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 136/345 (39%), Positives = 188/345 (54%), Gaps = 21/345 (6%)
Query: 16 SSSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
S+ K +G + P +PWVEKYRPKT+DDV+ E + LK + PH + G
Sbjct: 2 STDKGKAPANGTAASLPYELPWVEKYRPKTLDDVVGNSETIERLKVVARDGNCPHIILSG 61
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R+KVK FAQ+ +
Sbjct: 62 LPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKVKAFAQKKVT------- 114
Query: 134 PCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PP KIVILDEADSMT AQ ALRRTME +TRF L CN + II+P+ SRC+
Sbjct: 115 -LPPGRHKIVILDEADSMTPGAQQALRRTMEIFANTTRFALACNMSNKIIEPIQSRCAIL 173
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + +L RL ICE E V + L L+ T+ GDMR+AI LQS G G
Sbjct: 174 RYAKLRDAEVLRRLLEICEMEGVKYNDDGLTALIFTAEGDMRQAINNLQSTF---SGFGF 230
Query: 252 VNEDVLEVTGVIPNP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
V+ D + P+P I LK D +EK + +L YSA + +V
Sbjct: 231 VSADNVFKVCDQPHPVVVQAMIRSCLKGDVENAMEK-LNELWNHGYSAVDIVVTIFRVVK 289
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
+ + + K ++++ + R+ +G S IQ+ L + + K N
Sbjct: 290 TFDEIPEYTKLEYIKEIGFTHMRILEGVSTLIQLGGLMARLCKMN 334
>gi|55379214|ref|YP_137064.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
gi|55231939|gb|AAV47358.1| replication factor C small subunit [Haloarcula marismortui ATCC
43049]
Length = 345
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 178/310 (57%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 36 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 95
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 96 WREHFLELNASDERGIDVVRDRIKNFARTSFGGVE--------YRIIFLDEADALTSDAQ 147
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 148 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDI 207
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++
Sbjct: 208 ELTEDGLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQS 265
Query: 274 -VDSFQVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D + D +L E + + DQ H + + D +LE++ E + R+
Sbjct: 266 ALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDDAAVRVLERIGETDYRI 324
Query: 331 QDGASEYIQI 340
GA+E +Q+
Sbjct: 325 TRGANERVQL 334
>gi|435845437|ref|YP_007307687.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
gi|433671705|gb|AGB35897.1| DNA polymerase III, gamma/tau subunit [Natronococcus occultus SP4]
Length = 330
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 118/327 (36%), Positives = 187/327 (57%), Gaps = 15/327 (4%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +D++ +++V L++ + DLPH LF GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDEIKGHEDIVPRLQRYVEQNDLPHLLFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
E+ + +++ I +E + ++ L+ + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 EDALEAQIREIATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAAVM--GEVVDEETVF 231
Query: 258 EVTGVIPNPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSD 313
+T +E ++ +D F +EDL+ E + + DQ H +S+
Sbjct: 232 AITSTARPEEVEAMVDQAIDGDFTAARAALEDLLTERGLAGGDVIDQLHRSAWQ-FDISE 290
Query: 314 KQKALILEKLAECNARLQDGASEYIQI 340
+LE+L E + R+ +GA+E +Q+
Sbjct: 291 TATVRLLERLGEVDYRITEGANERLQL 317
>gi|448388975|ref|ZP_21565470.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
gi|445669262|gb|ELZ21874.1| replication factor C small subunit [Haloterrigena salina JCM 13891]
Length = 330
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/321 (37%), Positives = 187/321 (58%), Gaps = 24/321 (7%)
Query: 31 KPVP-----WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
+P P W+EKYRP+ +D++ + +V L++ + DLPH +F GP GTGKT+ A
Sbjct: 10 EPTPGRTEVWIEKYRPERLDEIKGHENIVPRLQRYVERDDLPHLMFAGPAGTGKTTAAQA 69
Query: 86 ACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
+++ D +RE LELNASD RGI V+RD++K FA+ + G++ +I+ LDE
Sbjct: 70 IAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH--------RIIFLDE 121
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L E+ + ++
Sbjct: 122 ADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQV 181
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPN 265
+ I E E + ++ LV + GDMR+AI LQ+ A + GE + E V +T
Sbjct: 182 REIAENEGIEVTDDGVDALVYAADGDMRKAINGLQAAAVM--GETVDEETVFAITATARP 239
Query: 266 PWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI-- 319
+E++++ +D F +EDL+ E + + DQ H SA + A +
Sbjct: 240 EEVEEMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDIPELATVRL 296
Query: 320 LEKLAECNARLQDGASEYIQI 340
LE+L E + R+ +GA+E +Q+
Sbjct: 297 LERLGEVDYRITEGANERLQL 317
>gi|448315838|ref|ZP_21505477.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
gi|445610597|gb|ELY64367.1| replication factor C small subunit [Natronococcus jeotgali DSM
18795]
Length = 330
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 188/329 (57%), Gaps = 19/329 (5%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +D++ + +V LK+ + DLPH +F GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
E+ + +++ I +E + ++ L+ + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 EDAVEAQIREIATEEGIEVTDDGVDALIYAADGDMRKAINGLQAAAVM--GEVVDEETVF 231
Query: 258 EVTGVIPNPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSD 313
+T +E ++ +D F +EDL+ E + + DQ H SA
Sbjct: 232 AITSTARPEEVEAMVDRAIDGDFTAARAALEDLLTERGLAGGDVIDQLH---RSAWQFDI 288
Query: 314 KQKALI--LEKLAECNARLQDGASEYIQI 340
+KA + LE+L E + R+ +GA+E +Q+
Sbjct: 289 PEKATVRLLERLGEVDYRITEGANERLQL 317
>gi|403224069|dbj|BAM42199.1| replication factor C subunit [Theileria orientalis strain Shintoku]
Length = 347
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 127/332 (38%), Positives = 185/332 (55%), Gaps = 31/332 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T D+I ++++S L LPH LF+GPPG GKTST++A L+G
Sbjct: 8 PWVEKYRPETFQDIISHEDIMSTLMVFAEKGQLPHLLFHGPPGAGKTSTIMAIARYLYGS 67
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP---FKIVILDEADSMT 150
+LELNASD+RGI +R+++K+F++ + + + PP K++ILDEAD MT
Sbjct: 68 QRNGFVLELNASDERGIDTVREQIKSFSETSNTFSSTSANEDPPRTTLKLIILDEADQMT 127
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
+AAQ ALRR ME + + RFCLICN+++ II P+ SRC+ FRF+PL + +++ I
Sbjct: 128 NAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPELVRQKIKDIAA 187
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCAR--LKGGEGIVNEDVLEVTGVIPNPW- 267
E V AL+TLV+ GDMRR + CLQ A KG + +++ +++ T +P
Sbjct: 188 IEKVSVSECALDTLVDIGQGDMRRVLNCLQVTAMSYAKGSDVVIDSNLILATSGLPKTLE 247
Query: 268 IEKLLK----------VDSFQVLEKY----IEDLILEAYSATQLFDQFHDIVMSASSLSD 313
I+ LL+ VD L +EDL+ Y A D + V+
Sbjct: 248 IDHLLQSLMQNSFKECVDELNELHHTKGYSVEDLVRGVYKAVLKIDWPNVPVIQ------ 301
Query: 314 KQKALILEKLAECNARLQDGASEYIQILDLGS 345
+L +LA+ RL GA+ IQI L S
Sbjct: 302 -----LLIRLADIEERLSSGANTSIQIAALVS 328
>gi|448467531|ref|ZP_21599543.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
gi|445812407|gb|EMA62401.1| replication factor C small subunit [Halorubrum kocurii JCM 14978]
Length = 327
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 180/310 (58%), Gaps = 17/310 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD- 93
W+EKYRP+++DD+ Q+E+V L+ + D+PH LF GP G GKT+ A Q++GD
Sbjct: 18 WIEKYRPQSLDDIHGQEEIVERLQSYIEQDDIPHLLFSGPAGVGKTTASTAIARQVYGDD 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ + G F+IV LDEADS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG---------DFRIVFLDEADSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + + + I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAAQTREIAAAEG 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL- 272
+ ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 189 IEVTDAGVDALVYAADGDMRRAINSLQAAATT--GDVVDEEAVYAITATARPEEIESMVT 246
Query: 273 -KVDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+D F ++ L+ E + + DQ H V LS+++ ++E++ E + R
Sbjct: 247 NALDGDFTRARATLDQLLTETGMAGGDVIDQLHRSVWE-FDLSEREAVALMERIGEADYR 305
Query: 330 LQDGASEYIQ 339
+ +GA+E +Q
Sbjct: 306 IAEGANEQVQ 315
>gi|430814133|emb|CCJ28598.1| unnamed protein product [Pneumocystis jirovecii]
Length = 350
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 122/323 (37%), Positives = 189/323 (58%), Gaps = 15/323 (4%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
SK + + K +PWVEKYRP+ + +++ Q+++ +++ + +PH LFYGPPGT
Sbjct: 24 SKKILESDTKHDGSTLPWVEKYRPEDLKEIVSHQDIILTIEEFIKKNRIPHLLFYGPPGT 83
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKTST++A +++G +R ++LELNASD+RGI V+R+++K FA T FN
Sbjct: 84 GKTSTILACAKKIYGPKFRNQLLELNASDERGIDVVREQIKNFA-STKQIFNSG------ 136
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
FK+VILDEAD+MT AAQ ALRR +EK TK+ RFC+ICNYV+ I + SRC++FRF+PL+
Sbjct: 137 FKLVILDEADAMTLAAQNALRRVIEKYTKNVRFCIICNYVNKISLAIQSRCTRFRFQPLS 196
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+ +L Y+ + E++ K LV+ + GDMR+ + LQ+C ++ED +
Sbjct: 197 SKEICLKLDYVIKNENINISEKGKAELVKLADGDMRKGLNILQAC---HAAYDFIDEDAV 253
Query: 258 EVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 317
P+P I +L+ F + I++ + L DI+ + D+
Sbjct: 254 YNCVGNPHPEIIELIVKSLFNDEFLICLNTIIKVKTERGL--ALLDIITGVYEVLDE--- 308
Query: 318 LILEKLAECNARLQDGASEYIQI 340
L L + RL +GASE IQ+
Sbjct: 309 LELPINLQYRYRLSNGASEKIQL 331
>gi|427798817|gb|JAA64860.1| Putative replication factor c activator 1 5, partial [Rhipicephalus
pulchellus]
Length = 314
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 130/327 (39%), Positives = 193/327 (59%), Gaps = 23/327 (7%)
Query: 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84
S T N +PWVEKYRP+ +DD+I ++++S + + + LPH LFYGPPGTGKTST++
Sbjct: 2 SAATTN--LPWVEKYRPQKLDDLIAHEDIISTIGRFIKEDKLPHLLFYGPPGTGKTSTIL 59
Query: 85 AACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A Q++ + ++LELNASDDRGI ++R ++ +FA T + FN FK+++L
Sbjct: 60 ACAQQIYSPKEFTSKVLELNASDDRGIGIVRGEILSFAS-TKTIFNTG------FKLIVL 112
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT+ AQ ALRR +EK T++ RFCLICNY+S II L SRC++FRF PL M
Sbjct: 113 DEADAMTNDAQNALRRVIEKFTENARFCLICNYLSKIIPALQSRCTRFRFGPLTAAQMSP 172
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
R+ ++ QE + + L++ + GDMR+A+ LQS + + E VNE V +
Sbjct: 173 RIDHVITQERLTVTADGKKALMDLAQGDMRKALNILQSTS-MAFDE--VNET--NVYLCV 227
Query: 264 PNPWIEKLLKV------DSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQK 316
+P E + + + F+ +I L + A Q + Q H + + L DK K
Sbjct: 228 GHPLKEDISDIVSTLLNEDFEYSYNHINKLKVGKGLALQDVLTQVH-LYVHRIELPDKVK 286
Query: 317 ALILEKLAECNARLQDGASEYIQILDL 343
+++K+AE RL G SE IQ+ L
Sbjct: 287 MYLIDKMAEIEYRLAAGTSEKIQLSSL 313
>gi|298675837|ref|YP_003727587.1| replication factor C [Methanohalobium evestigatum Z-7303]
gi|298288825|gb|ADI74791.1| Replication factor C [Methanohalobium evestigatum Z-7303]
Length = 318
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 189/311 (60%), Gaps = 16/311 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP +DD++ Q E + LK +S +LPH LF GPPG GKT+ +A +LFGD
Sbjct: 6 WIEKYRPFKLDDIVGQGEAIKRLKSYISTNNLPHLLFSGPPGVGKTAAAVAIAKELFGDA 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ + ELNASD+RGI V+R K+K F++ + G FKI+ LDEAD++T AQ
Sbjct: 66 WHQNFTELNASDERGIDVVRTKIKDFSKTSPIG-------GADFKIIFLDEADALTPDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ T + RF L CNY S II+P+ SRC+ +RF+ L+ + R++YI EQE +
Sbjct: 119 SALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRSLSYEAVEKRVRYIAEQEGL 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLK 273
+E + S GDMR+AI LQ+ A + + ++++D + ++T IE+L++
Sbjct: 179 QISEDGVEAIKYVSQGDMRKAINALQASALI---DDVIDKDTIYKITATAHPEEIEELVQ 235
Query: 274 --VD-SFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+D +F+ + +E L+ E S + Q + + + + +K +++K+ E + R
Sbjct: 236 KALDGNFKAARETMEKLMSEQGLSGEDVVGQIYRAIFNL-DIPEKLMVELVDKIGEIDFR 294
Query: 330 LQDGASEYIQI 340
L +GA+E IQ+
Sbjct: 295 LTEGANERIQL 305
>gi|296817467|ref|XP_002849070.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
gi|238839523|gb|EEQ29185.1| replication factor C subunit 3 [Arthroderma otae CBS 113480]
Length = 397
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 128/331 (38%), Positives = 183/331 (55%), Gaps = 26/331 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPDTLDDVSGHQDIIATINRFVESNRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPCPPFKIVILDEADSM 149
R+ +LELNASDDRGI V+R+++KTFA +Q S G FK++ILDEAD+M
Sbjct: 105 SKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSTAPSSGSGLGAFKLIILDEADAM 164
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AAQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 165 TSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRKLVDTVI 224
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR------LKGGEG--------IVNED 255
++E V A+++LV+ S GDMRRA+ LQ+C K GE ++ E+
Sbjct: 225 DKEQVQIQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKKGEANESPEERELITEE 284
Query: 256 VLEVTGVIPNP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS 310
+ P+P +E LL ++ L++ L D + S
Sbjct: 285 TIYTCIAAPHPTDIRTILETLLSTSDVTSCLNTVQ--TLKSNKGLALADIITALSTELQS 342
Query: 311 LSDKQKALI--LEKLAECNARLQDGASEYIQ 339
L + + +E LA+ RL G SE IQ
Sbjct: 343 LEVPPQVRVSWIEGLADVEWRLSGGGSEAIQ 373
>gi|356509405|ref|XP_003523440.1| PREDICTED: replication factor C subunit 5-like [Glycine max]
Length = 363
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 129/346 (37%), Positives = 188/346 (54%), Gaps = 31/346 (8%)
Query: 15 PSSSKTSVSTSG-KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
P +K+ V S K +PWVEKYRP ++DDV +++V + + + LPH L YG
Sbjct: 21 PDKAKSVVVASNPAAAGKAIPWVEKYRPLSLDDVAAHRDIVDTIDRLTTENRLPHLLLYG 80
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PPGTGKTST++A +L+G Y+ ILELNASDDRGI V+R +++ FA + F
Sbjct: 81 PPGTGKTSTILAVARKLYGSQYQNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVKSS 140
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
K+V+LDEAD+MT AQ ALRR +EK TKSTRF LICN+V+ II L SRC++FRF
Sbjct: 141 ----VKLVLLDEADAMTKDAQFALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRF 196
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
PL + RL+++ + E + + L LV S GDMR+A+ LQS + I
Sbjct: 197 APLDAVHVTERLKHVIKAEGLDVEDSGLAALVRLSNGDMRKALNILQSTH--MASQQITE 254
Query: 254 EDVLEVTGVIPNP----------WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHD 303
E V TG NP W+ DSF+ +++ ++ L D +
Sbjct: 255 ETVYLCTG---NPLPKDIEQISYWLLNEQFADSFKRIDE------MKTRKGLALVDIVRE 305
Query: 304 IVMSASSLS--DKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
+ + + + ++ LA+ RL G ++ +Q LGS++
Sbjct: 306 VTLFVFKIKMPSAVRVQLMNDLADIEYRLSFGCNDKLQ---LGSVI 348
>gi|168037225|ref|XP_001771105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677638|gb|EDQ64106.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 365
Score = 219 bits (558), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 132/349 (37%), Positives = 185/349 (53%), Gaps = 36/349 (10%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
A K V + + K PWVEKYRP ++ DV ++++ + + LPH L YG
Sbjct: 12 ASQKGKGKVDLNNGRQVKGGPWVEKYRPTSLADVAAHKDIIDTIDRLTGENRLPHLLLYG 71
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PPGTGKTST++A +L+G Y+ ILELNASDDRGI+V+R +++ FA + F
Sbjct: 72 PPGTGKTSTILAVARKLYGAQYQNMILELNASDDRGIEVVRQQIQDFASTKSISFG---- 127
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
P K+VILDEAD+MT AQ ALRR +EK TKSTRFCLICNY S II L SRC++FRF
Sbjct: 128 PKVNVKLVILDEADAMTKDAQFALRRVIEKYTKSTRFCLICNYASKIIPALQSRCTRFRF 187
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
PL + RL+Y+ +QE + L +V + GD+R+A+ LQS +
Sbjct: 188 APLDPANVTERLRYVIQQEGLDVTDGGLAAIVRLANGDLRKALNILQSAQ--MASPHLTE 245
Query: 254 EDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDL--ILEAYSATQLFDQFHDIVMSASS- 310
E V TG NP + + ++ + + E + IL L FHDI +S
Sbjct: 246 EAVYLCTG---NPMPKDIEQIAYWLLNEPFSTSFQSILN-----NLIKLFHDITKMKTSK 297
Query: 311 ---LSDKQKAL----------------ILEKLAECNARLQDGASEYIQI 340
L D + L +++ LA+ RL G +E +Q+
Sbjct: 298 GLALVDVARELQPFVFTINMPPTVRVQLIDALADVEYRLAFGTNEKLQL 346
>gi|448354529|ref|ZP_21543285.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
gi|445637417|gb|ELY90567.1| replication factor C small subunit [Natrialba hulunbeirensis JCM
10989]
Length = 339
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/337 (34%), Positives = 191/337 (56%), Gaps = 19/337 (5%)
Query: 8 GKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLP 67
G + + ++ + ST+G+T W+EKYRP+ +D++ + +V L++ + DLP
Sbjct: 6 GATEAETDTDTEVAESTAGRTE----VWIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLP 61
Query: 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
H +F GP GTGKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G
Sbjct: 62 HLMFAGPAGTGKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARASFGG 121
Query: 128 FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
++ +I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SR
Sbjct: 122 YDH--------RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSR 173
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
C+ FRF L E + +++ I + + ++ LV + GDMR+AI LQ+ A +
Sbjct: 174 CAVFRFTQLTETAIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAVM-- 231
Query: 248 GEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFHD 303
GE + E V +T +E+++ F +EDL+ + + + DQ H
Sbjct: 232 GETVDEETVFAITATARPEEVEEMVDQAIAGDFTAARASLEDLLTDRGLAGGDVIDQLHR 291
Query: 304 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
+ +K+ +LE+L E + R+ +GA+E +Q+
Sbjct: 292 SAWE-FDIPEKETVRLLERLGEVDFRITEGANERLQL 327
>gi|254579519|ref|XP_002495745.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
gi|238938636|emb|CAR26812.1| ZYRO0C02090p [Zygosaccharomyces rouxii]
Length = 338
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/251 (43%), Positives = 161/251 (64%), Gaps = 21/251 (8%)
Query: 24 TSGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
T G +N + +PWVEKYRP+++DDV Q EV++ ++K L LPH LFYGPPGTGKTS+
Sbjct: 2 TIGNVKNMENLPWVEKYRPESLDDVYGQTEVITTIRKFLETGKLPHLLFYGPPGTGKTSS 61
Query: 83 MIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+IA +++G Y +LELNASDDRGI V+R+++K FA T F++ FK++I
Sbjct: 62 IIALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKLII 114
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 115 LDEADAMTNAAQNALRRIIERYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLPREAIQ 174
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
R+ + +E + A L++ S GDMRR + LQ+C + ++++ +E+T
Sbjct: 175 RRISNVLVREQLQMTESAENALLDLSRGDMRRVLNVLQAC------KAVIDQPNVEITDD 228
Query: 263 I-------PNP 266
+ PNP
Sbjct: 229 LIYDCCGAPNP 239
>gi|390604618|gb|EIN14009.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 342
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 192/353 (54%), Gaps = 29/353 (8%)
Query: 7 TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADL 66
T LGK ++ +V+ +PWVEKYRPK +DDV+ E + LK +
Sbjct: 2 TSTLGKGKGPATNGTVAYE-------LPWVEKYRPKVLDDVVGNIETIERLKVIARDGNC 54
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTAS 126
PH + G PG GKT+++ HQL G+ Y+E +LELNASD+RGI+V+R+K+KTFAQ+ +
Sbjct: 55 PHIIISGMPGIGKTTSIHCLAHQLLGNAYKEGVLELNASDERGIEVVRNKIKTFAQKKVT 114
Query: 127 GFNQDGKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
PP KIVILDEADSMT AQ ALRRTME +TRFCL CN + II+P+
Sbjct: 115 --------LPPGRHKIVILDEADSMTAGAQQALRRTMEIYANTTRFCLACNMSNKIIEPI 166
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SRC+ R+ L + +L RL ICE E V + L L+ TS GDMR+AI LQS
Sbjct: 167 QSRCAILRYSKLRDTELLKRLLEICELEKVKYNDDGLTALIFTSEGDMRQAINNLQSTW- 225
Query: 245 LKGGEGIVNEDVLEVTGVIPNP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFD 299
G G V+ D + P+P I K D +EK + DL + YSA +
Sbjct: 226 --SGFGFVSGDNVFKVCDQPHPITVQTIIRACQKSDLDTAMEK-LNDLWEQGYSAVDIVV 282
Query: 300 QFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+V + L + + ++++ + R+ +G IQ LG ++ + +K
Sbjct: 283 TIFRVVKTMDDLPEYTELEYIKEIGFTHMRILEGVGTIIQ---LGGLIARLSK 332
>gi|448434836|ref|ZP_21586534.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
gi|445684459|gb|ELZ36835.1| replication factor C small subunit [Halorubrum tebenquichense DSM
14210]
Length = 327
Score = 219 bits (558), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 180/310 (58%), Gaps = 17/310 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP+T+DD+ Q+E+V L+ ++ D+PH LF GP G GKT+ A +++G D
Sbjct: 18 WIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGED 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ + G F+IV LDEADS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG---------DFRIVFLDEADSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + ++ I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAED 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 189 IEVTDEGIDALVYAADGDMRRAINSLQAAATT--GDVVDEEAVYAITATARPEEIESMVT 246
Query: 274 ---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
F ++ L+ E + + DQ H V LS+++ ++E++ E + R
Sbjct: 247 DALNGDFARARSTLDTLLTETGMAGGDVIDQLHRSVWE-FELSEREAVRLMERIGEADYR 305
Query: 330 LQDGASEYIQ 339
+ +GA+E +Q
Sbjct: 306 IAEGANEQVQ 315
>gi|45190411|ref|NP_984665.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|44983307|gb|AAS52489.1| AEL196Wp [Ashbya gossypii ATCC 10895]
gi|374107881|gb|AEY96788.1| FAEL196Wp [Ashbya gossypii FDAG1]
Length = 333
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/324 (40%), Positives = 184/324 (56%), Gaps = 19/324 (5%)
Query: 25 SGKTRN-KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
SG RN +PW+EKYRP ++DDV Q++VV ++K + LPH LFYGPPGTGKTST+
Sbjct: 2 SGVARNANNLPWIEKYRPDSLDDVYGQRDVVETVRKFVQEGRLPHLLFYGPPGTGKTSTI 61
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A +++G YR +LELNASDDRGI V+R+++K FA T F++ FK++IL
Sbjct: 62 CALAKEIYGKNYRNMVLELNASDDRGIDVVRNQIKEFA-STRQIFSKG------FKLIIL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AAQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+PLAE +
Sbjct: 115 DEADAMTSAAQNALRRIIEKYTKNTRFCILANYAHKLTPALLSRCTRFRFQPLAEAAIER 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVLEVTGV 262
R+ I E + A L+ + GDMRRA+ LQ+ A L V EDV+
Sbjct: 175 RVLSIMAHEHLQLTEDARAALLRLAAGDMRRALNVLQAAKATLDDPAQPVTEDVVYDCVG 234
Query: 263 IPNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ-- 315
P+P ++ +L+ D L+ + L D H V +S KQ
Sbjct: 235 APHPRDIETVVDSILRDDWATALDTVRR---VRVARGLALVDMIHGAVELLTSYDLKQPT 291
Query: 316 KALILEKLAECNARLQDGASEYIQ 339
+ +L LA+ + G S+ IQ
Sbjct: 292 RIALLTHLADIEYAVSKGGSDKIQ 315
>gi|448664377|ref|ZP_21684180.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
gi|445775022|gb|EMA26036.1| replication factor C small subunit [Haloarcula amylolytica JCM
13557]
Length = 325
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 179/310 (57%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+G+
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGED 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEGI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQS 245
Query: 274 -VDSFQVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D + D +L E + + DQ H + + D+ +LE++ E + R+
Sbjct: 246 ALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIEDEAAVRVLERIGETDYRI 304
Query: 331 QDGASEYIQI 340
GA+E +Q+
Sbjct: 305 TRGANERVQL 314
>gi|169771859|ref|XP_001820399.1| replication factor C subunit 3 [Aspergillus oryzae RIB40]
gi|83768258|dbj|BAE58397.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391874706|gb|EIT83551.1| replication factor C, subunit RFC5 [Aspergillus oryzae 3.042]
Length = 398
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/252 (46%), Positives = 159/252 (63%), Gaps = 26/252 (10%)
Query: 13 DAPSSSK--TSVSTSGKTR----NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKC 60
DAPS S S +TSGK + + PV PWVEKYRP T+DDV Q++++ + +
Sbjct: 11 DAPSKSIQFNSDNTSGKAKRVASDLPVEAQDNLPWVEKYRPNTLDDVSGHQDILATINRF 70
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKT 119
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KT
Sbjct: 71 VDANRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKT 130
Query: 120 FAQ---------QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRF 170
FA Q SG G +K++ILDEAD+MT AQ ALRR MEK T +TRF
Sbjct: 131 FASTKQIFSMAPQPTSG----GSSLASYKLIILDEADAMTATAQMALRRIMEKYTANTRF 186
Query: 171 CLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG 230
C+I NY + L SRC++FRF PL E + + + + E+E V +A+++LV+ S G
Sbjct: 187 CIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDLVIEKEEVKIQPEAVDSLVKLSKG 246
Query: 231 DMRRAITCLQSC 242
DMRRA+ LQ+C
Sbjct: 247 DMRRALNVLQAC 258
>gi|357463515|ref|XP_003602039.1| Replication factor C subunit [Medicago truncatula]
gi|355491087|gb|AES72290.1| Replication factor C subunit [Medicago truncatula]
Length = 355
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/319 (39%), Positives = 180/319 (56%), Gaps = 18/319 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+++DDV +++V + + + LPH L YGPPGTGKTST++A +L+G
Sbjct: 34 WVEKYRPQSLDDVAAHRDIVDTIDRLTTENRLPHLLLYGPPGTGKTSTILAVARKLYGAQ 93
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
Y ILELNASDDRGI V+R +++ FA + F P K+V+LDEAD+MT AQ
Sbjct: 94 YHNMILELNASDDRGIDVVRQQIQDFASTQSLSFGVK----PSVKLVLLDEADAMTKDAQ 149
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR +EK TKSTRF LICN+V+ II L SRC++FRF PL + RL+++ E +
Sbjct: 150 FALRRVIEKYTKSTRFALICNHVNKIIPALQSRCTRFRFAPLDAVHVTERLKHVINAERL 209
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
L LV S GDMR+A+ LQS + I E V TG NP + + ++
Sbjct: 210 DVQDSGLSALVRLSNGDMRKALNILQSTH--MASQQITEEAVYLCTG---NPLPKDIEQI 264
Query: 275 DSFQVLEKYIEDLI----LEAYSATQLFDQFHDIVMSASSLS--DKQKALILEKLAECNA 328
+ + E+Y E ++ L D ++ M ++ + ++ LA+
Sbjct: 265 SYWLLNEQYSESFKRIYDMKTRKGLALIDIVREVTMFVFKINMPSAVRVQLVNDLADIEY 324
Query: 329 RLQDGASEYIQILDLGSIV 347
RL G ++ +Q LGS+V
Sbjct: 325 RLSFGCNDKLQ---LGSVV 340
>gi|170087828|ref|XP_001875137.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650337|gb|EDR14578.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 334
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/323 (39%), Positives = 187/323 (57%), Gaps = 36/323 (11%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
VEKYRP T+DDV+ +++ + +++ + LPH LFYGPPGTGKTST++A +++G Y
Sbjct: 18 VEKYRPVTLDDVVSHKDITNTIERFIEKNRLPHLLFYGPPGTGKTSTILAVARRIYGAQY 77
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
R++ILELNASD+RGI V+R++VK FA +T + F + FK++ILDEAD MT AQA
Sbjct: 78 RKQILELNASDERGIDVVREQVKQFA-ETRTLFAKG------FKLIILDEADMMTQQAQA 130
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRR +E+ TK+ RFC+ICNYV+ I + SRC++FRF PL + R++ + E E V
Sbjct: 131 ALRRVIEQYTKNVRFCIICNYVNKITPAIQSRCTRFRFSPLPAIEVEKRVKTVVEAEQVS 190
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEKLLK- 273
+ L++ S GDMRRA+ LQ+C + I ++ TG P+P IE ++
Sbjct: 191 LTDDGKKALLKLSRGDMRRALNVLQACH--AAYDTIGETEIYNCTGN-PHPSDIEAIVNS 247
Query: 274 ------VDSFQVLEKY-------IEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
S+Q+ K ++DL+ AY + D + + +L
Sbjct: 248 MLADEFTASYQMTSKMKTERGLALQDLLTGAYEYLETID-----------IKPHARIYLL 296
Query: 321 EKLAECNARLQDGASEYIQILDL 343
+ LA RL G SE +Q+ L
Sbjct: 297 DHLATTEHRLSTGGSEKMQLTAL 319
>gi|150400153|ref|YP_001323920.1| replication factor C small subunit [Methanococcus vannielii SB]
gi|166225157|sp|A6US36.1|RFCS_METVS RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150012856|gb|ABR55308.1| Replication factor C [Methanococcus vannielii SB]
Length = 315
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 180/320 (56%), Gaps = 32/320 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +D+V+ QE++ LK + +PH LF G PG GKT+ + L+G+
Sbjct: 4 PWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGN 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++E LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWKENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+ES
Sbjct: 117 QNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKES 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ ++ S GDMR+AI LQ+ A + +NE V+ P +++ K
Sbjct: 177 INVEKSGMDAIIYVSEGDMRKAINVLQTGAAVSKN---INETVIYKVASKARP--DEIKK 231
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALIL 320
+ + K++E + QL+ D MS +S+K+K ++
Sbjct: 232 MTELALNGKFVE-------AREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLV 284
Query: 321 EKLAECNARLQDGASEYIQI 340
E + EC+ R+ +GA+E IQ+
Sbjct: 285 EAIGECDFRIVEGANERIQL 304
>gi|284163322|ref|YP_003401601.1| replication factor C [Haloterrigena turkmenica DSM 5511]
gi|284012977|gb|ADB58928.1| Replication factor C [Haloterrigena turkmenica DSM 5511]
Length = 330
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 187/321 (58%), Gaps = 24/321 (7%)
Query: 31 KPVP-----WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
+P P W+EKYRP+ +D++ + +V LK+ + +LP+ +F GP GTGKT+ +
Sbjct: 10 EPTPGRTEVWIEKYRPERLDEIKGHENIVPRLKQYVERDELPNLMFAGPAGTGKTTAAVG 69
Query: 86 ACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
+++GD +RE LELNASD RGI V+RD++K FA+ + G++ +I+ LDE
Sbjct: 70 IAREIYGDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH--------RIIFLDE 121
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRL 205
AD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L E+ + ++
Sbjct: 122 ADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTEDAIEAQV 181
Query: 206 QYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPN 265
+ I E + ++ LV + GDMR+AI LQ+ A + GE + E V +T
Sbjct: 182 REIAANEGIEVTDDGVDALVYAADGDMRKAINGLQAAAVM--GETVDEETVFAITATARP 239
Query: 266 PWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI-- 319
+EK+++ +D F +EDL+ E + + DQ H SA + A +
Sbjct: 240 EEVEKMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDIPEMATVRL 296
Query: 320 LEKLAECNARLQDGASEYIQI 340
LE+L E + R+ +GA+E +Q+
Sbjct: 297 LERLGEVDYRITEGANERLQL 317
>gi|67610162|ref|XP_667086.1| replication factor C3 [Cryptosporidium hominis TU502]
gi|54658182|gb|EAL36856.1| replication factor C3 [Cryptosporidium hominis]
Length = 377
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 125/355 (35%), Positives = 190/355 (53%), Gaps = 48/355 (13%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + D++ +++++ ++K +S LPH LF+GPPGTGKTST+ A ++
Sbjct: 6 LPWVEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAISKCIYK 65
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP------------------ 134
D + +LELNASDDRGI V+RD +K+F++ ++ N G
Sbjct: 66 DRKYQMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEYIEMSDVSTRNLD 125
Query: 135 -----CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
C K++ILDEAD MT AQ ALRR ME+ ++ RFC+ICNYV+ I L SRC+
Sbjct: 126 CNKSLCENIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPALQSRCT 185
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
+FRF PL + R+ I E + + E+L+++S GDMR+ + LQSC+ G
Sbjct: 186 RFRFSPLPIEDIRNRISEIALSERIFVTREGQESLIKSSRGDMRKVLNVLQSCSMSNYGN 245
Query: 250 GIVNEDVLEVTGV--------IPNPWIEKLLKVDSFQVLEKYIEDLILEAYS-------- 293
++D E+ GV I I ++L + + L+ L E++S
Sbjct: 246 IQKHKDSGELNGVSIEGLITYINEEMIHRILGIPTKSELDYIFGILSRESFSSGFSALQN 305
Query: 294 -------ATQLF-DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
+TQ F + + M A + D+ L++ +LA+ RL GASE IQ+
Sbjct: 306 SQNKNGYSTQDFVNGLYSKSMEA-NWPDEVVPLLMRRLADIEYRLSRGASESIQL 359
>gi|48097300|ref|XP_393747.1| PREDICTED: replication factor C subunit 5-like [Apis mellifera]
Length = 328
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/323 (39%), Positives = 190/323 (58%), Gaps = 17/323 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
S T++ +PWVEKYRPK +DD+I +E++ + K + LPH LFYGPPGTGKTST+
Sbjct: 2 NSKPTQSTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENLLPHLLFYGPPGTGKTSTI 61
Query: 84 IAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A +L+ + +LE+NASDDRGI ++R ++ +FA T + + FK++I
Sbjct: 62 LACARKLYTSAQFNSMVLEMNASDDRGINIVRGQILSFAS-TGTMYKSG------FKLII 114
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT+ AQ ALRR +EK T + RFC+ICNY+S II L SRC+KFRF PL+ + +L
Sbjct: 115 LDEADAMTNDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLSIDQIL 174
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL I ++E++ + L+ SGGDMR+ + LQS G + E+V G
Sbjct: 175 PRLDTIIKEENLNVTEDGKQALITLSGGDMRKVLNVLQSTWLAFG--AVTEENVYSCVGH 232
Query: 263 IPNPW----IEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQKA 317
P P I L +S+++ I+D+ L+ A Q + + H + ++ D
Sbjct: 233 -PLPIDIKNIVNWLFNESYELCYCKIQDIKLKKGLALQDILTELH-LFINKIEFPDSILI 290
Query: 318 LILEKLAECNARLQDGASEYIQI 340
++ KLAE R+ G SE +Q+
Sbjct: 291 DLIIKLAEIEKRVSIGCSEAVQL 313
>gi|308487512|ref|XP_003105951.1| CRE-RFC-4 protein [Caenorhabditis remanei]
gi|308254525|gb|EFO98477.1| CRE-RFC-4 protein [Caenorhabditis remanei]
Length = 362
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 115/237 (48%), Positives = 156/237 (65%), Gaps = 18/237 (7%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
++K + W EKYRPKT+DD+ Q EVV++LK L G DLPH LFYGPPGTGKTST +A C
Sbjct: 11 KSKVLTWTEKYRPKTLDDIAHQDEVVTMLKGALQGKDLPHLLFYGPPGTGKTSTALAFCR 70
Query: 89 QLF-GDMYRERILELNASDDRGIQVIRDKV--------------KTFAQQTASGFNQDGK 133
QLF +++++R+L+LNASD+RGI V+R KV ++F++ T S ++
Sbjct: 71 QLFPRNIFQDRVLDLNASDERGISVVRQKVSRFIVLLSNHSLQIQSFSKTTLSTNCKED- 129
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
KI+ILDE D+MT AQAA+RR +E +K+TRF LICNYVS +I P+ SRC+KFRF
Sbjct: 130 -VLKLKIIILDEVDAMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRF 188
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR-LKGGE 249
K L + RL+ IC+ E L ++E S GD+RRA+ LQS A L+ G+
Sbjct: 189 KSLPSEVQVQRLRTICDAEETPMSNDELMQVMEYSEGDLRRAVCTLQSLAPILRSGD 245
>gi|289581577|ref|YP_003480043.1| replication factor C [Natrialba magadii ATCC 43099]
gi|448283016|ref|ZP_21474295.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
gi|289531130|gb|ADD05481.1| Replication factor C [Natrialba magadii ATCC 43099]
gi|445574724|gb|ELY29212.1| replication factor C small subunit [Natrialba magadii ATCC 43099]
Length = 341
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/337 (34%), Positives = 192/337 (56%), Gaps = 19/337 (5%)
Query: 8 GKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLP 67
G + + ++ + ST+G+T W+EKYRP+ +D++ + +V L++ + DLP
Sbjct: 8 GATEAETDTDTEVAESTAGRTE----VWIEKYRPEYLDEIKGHENIVPRLQRYVEQDDLP 63
Query: 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
H +F GP GTGKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G
Sbjct: 64 HLMFAGPAGTGKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARASFGG 123
Query: 128 FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
++ +I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SR
Sbjct: 124 YDH--------RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSR 175
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG 247
C+ FRF L E + +++ I + + ++ LV + GDMR+AI LQ+ A +
Sbjct: 176 CAVFRFTQLTETAIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAVM-- 233
Query: 248 GEGIVNEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFHD 303
GE + E V +T +E++++ F +EDL+ + + + DQ H
Sbjct: 234 GETVDEETVFAITATARPEEVEEMVEQAIAGDFTAARASLEDLLTDRGLAGGDVIDQLHR 293
Query: 304 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
+ +++ +LE+L E + R+ +GA+E +Q+
Sbjct: 294 SAWE-FDIPEQETVRLLERLGEVDFRITEGANERLQL 329
>gi|255955413|ref|XP_002568459.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590170|emb|CAP96342.1| Pc21g14450 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 392
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/377 (37%), Positives = 204/377 (54%), Gaps = 51/377 (13%)
Query: 13 DAPSSSK-TSVSTSGKTR---NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLS 62
DAP + +S + SGK R + PV PWVEKYRP ++DDV Q++++ + + +
Sbjct: 10 DAPKDLQFSSDNASGKKRTVADLPVEAQDNLPWVEKYRPSSLDDVSGHQDILATINRFVE 69
Query: 63 GADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFA 121
LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTFA
Sbjct: 70 TNRLPHLLLYGPPGTGKTSTILALARRIYGTKNMRQMVLELNASDDRGIDVVREQIKTFA 129
Query: 122 QQTASGFNQD-----GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
T FN G P FK++ILDEAD+MT AQ ALRR ME+ T +TRFC+I NY
Sbjct: 130 S-TKQIFNMAPQGTAGSPLAGFKLIILDEADAMTSTAQMALRRIMERYTANTRFCVIANY 188
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+ L SRC++FRF PL E + T + + E+E V A+++LV S GDMRRA+
Sbjct: 189 THKLSPALLSRCTRFRFSPLKEVDIRTLVDQVIEKEGVKIQPDAVDSLVTLSKGDMRRAL 248
Query: 237 TCLQSC--------------ARLKGGEGIVNEDVLEVTGVIPNPW-IEKLLK-------- 273
LQ+C A E + N + + P+P I++++
Sbjct: 249 NVLQACFASSIPLPMRDAPKAPRPEPETVTNATIYDCIAA-PHPSDIQEIMTTILSTSDV 307
Query: 274 ---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+++ Q L+ + + SA L DQ + + A + + LE LAE RL
Sbjct: 308 TSCLNTVQTLKTTKGLALADILSA--LADQLQQLDVPAQT-----RITWLEGLAEIEWRL 360
Query: 331 QDGASEYIQILDLGSIV 347
G SE IQ L +V
Sbjct: 361 AGGGSEAIQTGGLVGVV 377
>gi|366988087|ref|XP_003673810.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
gi|342299673|emb|CCC67429.1| hypothetical protein NCAS_0A08710 [Naumovozyma castellii CBS 4309]
Length = 321
Score = 219 bits (557), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/312 (38%), Positives = 183/312 (58%), Gaps = 15/312 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ +DD++ +E + LK+ ++PH + G PG GKT++++ H+L G
Sbjct: 10 LPWVEKYRPRVLDDIVGNEETILRLKQIAQDGNMPHMIISGLPGIGKTTSVLCLAHELLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D Y + +LELNASDDRGI+V+R+++K FAQ+ + PP KI+ILDEADSMT
Sbjct: 70 DDYSKAVLELNASDDRGIEVVRNQIKQFAQKKSL--------LPPGKHKIIILDEADSMT 121
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L RL I +
Sbjct: 122 AGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRLLQIIK 181
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IE 269
E V LE ++ T+ GDMR+AI LQS G G+VN D + P+P +
Sbjct: 182 AEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNGDNVFKIVDSPHPLVVR 238
Query: 270 KLLKVDSF-QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
K+L + + L +DL + YSA + + S + + ++ +++++ +
Sbjct: 239 KMLLAPTLDESLTHLRKDLWGKGYSAVDIVTTSFRVTKSLFDIRESKRLEMIKEIGITHM 298
Query: 329 RLQDGASEYIQI 340
R+ +G S Y+Q+
Sbjct: 299 RILEGVSTYLQL 310
>gi|302813098|ref|XP_002988235.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
gi|302819400|ref|XP_002991370.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300140763|gb|EFJ07482.1| hypothetical protein SELMODRAFT_236274 [Selaginella moellendorffii]
gi|300143967|gb|EFJ10654.1| hypothetical protein SELMODRAFT_235493 [Selaginella moellendorffii]
Length = 332
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 182/328 (55%), Gaps = 18/328 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++ DV ++++ + + + LPH L YGPPGTGKTST++A +L+G
Sbjct: 10 PWVEKYRPASLADVAAHKDIIDTIDRLTAENKLPHLLLYGPPGTGKTSTILAVARKLYGP 69
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++ ILELNASDDRGI V+R +++ FA + F + K++ILDEAD+MT A
Sbjct: 70 QFQNMILELNASDDRGIDVVRQQIQDFASTQSISFGEKAN----VKLIILDEADAMTKDA 125
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q +LRR +EK TK+TRFCLICNYVS II L SRC++FRF PL + RL+++ +QE
Sbjct: 126 QFSLRRIIEKYTKNTRFCLICNYVSKIIPALQSRCTRFRFPPLQAQHVRERLEFVIDQER 185
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP----WIE 269
+ L +V S GDMR+A+ LQS + E V E + P P I
Sbjct: 186 LDVTEDGLSAIVRLSNGDMRKALNILQST---QMAEPHVTEAAVYSCTGNPTPKEIEQIA 242
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI--VMSASSLSDKQKALILEKLAECN 327
L +SFQ Y + L+ L D ++ + S+ + ++ LA+
Sbjct: 243 SWLLNESFQ--SAYSNIVQLKTSKGLALVDVVRELQPFIFTISMPGNIRVPLINCLADIE 300
Query: 328 ARLQDGASEYIQILDLGSIVIKANKTAV 355
RL G +E +Q LG++V T V
Sbjct: 301 YRLASGPNEKLQ---LGALVSAFTHTRV 325
>gi|344213231|ref|YP_004797551.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
gi|343784586|gb|AEM58563.1| replication factor C small subunit [Haloarcula hispanica ATCC
33960]
Length = 407
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 179/310 (57%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+G+
Sbjct: 98 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGED 157
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 158 WREHFLELNASDERGIDVVRDRIKNFARTSFGGVE--------YRIIFLDEADALTSDAQ 209
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 210 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRNIAAEEDI 269
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++
Sbjct: 270 ELTEDGLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQS 327
Query: 274 -VDSFQVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D + D +L E + + DQ H + + D+ +LE++ E + R+
Sbjct: 328 ALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDEAAVRVLERIGETDYRI 386
Query: 331 QDGASEYIQI 340
GA+E +Q+
Sbjct: 387 TRGANERVQL 396
>gi|448531306|ref|ZP_21620993.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
gi|445707263|gb|ELZ59121.1| replication factor C small subunit [Halorubrum hochstenium ATCC
700873]
Length = 327
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 179/310 (57%), Gaps = 17/310 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP+T+DD+ Q E+V L+ ++ D+PH LF GP G GKT+ A +++G D
Sbjct: 18 WIEKYRPQTLDDIHGQSEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGED 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ + G F+IV LDEADS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG---------DFRIVFLDEADSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + ++ I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAED 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 189 IEVTDEGIDALVYAADGDMRRAINSLQAAATT--GDVVDEEAVYAITATARPEEIESMVT 246
Query: 274 ---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
F ++ L+ E + + DQ H V LS+++ ++E++ E + R
Sbjct: 247 DALNGDFARARSTLDTLLTETGMAGGDVIDQLHRSVWE-FELSEREAVRLMERIGEADYR 305
Query: 330 LQDGASEYIQ 339
+ +GA+E +Q
Sbjct: 306 IAEGANEQVQ 315
>gi|363750179|ref|XP_003645307.1| hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888940|gb|AET38490.1| Hypothetical protein Ecym_2792 [Eremothecium cymbalariae
DBVPG#7215]
Length = 319
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 118/311 (37%), Positives = 183/311 (58%), Gaps = 14/311 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + D++ +E+V L++ ++PH + G PG GKT+++ H+L G
Sbjct: 9 LPWVEKYRPQLLKDIVGNEEIVERLQQIAYDGNMPHMIISGLPGIGKTTSIHCIAHELLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D Y + +LELNASDDRGI V+R+++K FAQ+ + PP KI+ILDEADSMT
Sbjct: 69 DSYSQAVLELNASDDRGIDVVRNQIKQFAQKKCT--------LPPGKHKIIILDEADSMT 120
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L RL I +
Sbjct: 121 SGAQQALRRTMEIYSSSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEIIK 180
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IE 269
E V LE ++ T+ GDMR+AI LQS G G+VN D + P+P ++
Sbjct: 181 LEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGFGLVNGDNVFKIVDSPHPLVVK 237
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
K+L +S Y++DL + YSA + ++ + + + + + I++++ + R
Sbjct: 238 KMLLANSLDESLTYLKDLWNKGYSAVDIITTCFRVMKNLAEIKEHIRLEIIKEIGFTHMR 297
Query: 330 LQDGASEYIQI 340
+ +G Y+Q+
Sbjct: 298 ILEGVGTYLQL 308
>gi|15791090|ref|NP_280914.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|169236842|ref|YP_001690042.1| replication factor C small subunit [Halobacterium salinarum R1]
gi|42559530|sp|Q9HN27.1|RFCS_HALSA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|226739141|sp|B0R7H7.1|RFCS_HALS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|10581691|gb|AAG20394.1| replication factor C small subunit [Halobacterium sp. NRC-1]
gi|167727908|emb|CAP14696.1| replication factor C small subunit [Halobacterium salinarum R1]
Length = 322
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 179/310 (57%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+ ++DV+ ++ L+ + DLPH LF GP GTGKT++ ++ +L+GD
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+++ LELNASD+RGI V+RD++K FA+ + G N ++++ LDEAD++T AQ
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFARSSFGGHN--------YRVIFLDEADALTDDAQ 123
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L ++ + L+ I E E +
Sbjct: 124 SALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGL 183
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
++ LV + GDMRRAI LQ+ + G+ + E V +T IE ++
Sbjct: 184 EHTDDGIDALVYAADGDMRRAINALQAAS--ATGDSVNEETVYAITATARPEEIETMVTE 241
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
F ++DL+ + + DQ H V + + +L++L E + R+
Sbjct: 242 ALGGDFAAARATLDDLLTNRGLAGGDIIDQVHRSVWE-FDVEEAAAVRLLDRLGEADYRI 300
Query: 331 QDGASEYIQI 340
+GA+E +Q+
Sbjct: 301 AEGANERVQL 310
>gi|425772715|gb|EKV11110.1| hypothetical protein PDIG_52530 [Penicillium digitatum PHI26]
gi|425775221|gb|EKV13502.1| hypothetical protein PDIP_47760 [Penicillium digitatum Pd1]
Length = 393
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 137/371 (36%), Positives = 197/371 (53%), Gaps = 41/371 (11%)
Query: 9 KLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
+ D S K +V+ +PWVEKYRP ++DDV Q++++ + + + LPH
Sbjct: 17 QFSSDNASGKKRTVADLPVEAQDNLPWVEKYRPSSLDDVSGHQDILATINRFVETNRLPH 76
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTFA T
Sbjct: 77 LLLYGPPGTGKTSTILALARRIYGTKNMRQMVLELNASDDRGIDVVREQIKTFAS-TKQI 135
Query: 128 FNQD-----GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
FN G P FK++ILDEAD+MT AQ ALRR ME+ T +TRFC+I NY +
Sbjct: 136 FNMAPQGTAGSPLAGFKLIILDEADAMTSTAQMALRRIMERYTSNTRFCVIANYTHKLSP 195
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
L SRC++FRF PL E + T + + E E V A+++LV S GDMRRA+ LQ+C
Sbjct: 196 ALLSRCTRFRFSPLKEVDIRTLVDKVIENEGVRMQPDAVDSLVTLSKGDMRRALNVLQAC 255
Query: 243 --------------ARLKGGEGIVNEDVLEVTGVIPNPW-IEKLLK-----------VDS 276
A E + N + + P+P I++++ +++
Sbjct: 256 FASSIPLPMRDAPKAPRPKPETVTNATIYDCIAA-PHPSDIQEIMTTILSTSDVTSCLNT 314
Query: 277 FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 336
Q L+ + + SA L DQ + + A + + LE LAE RL G SE
Sbjct: 315 VQTLKTTKGLALADILSA--LADQLQQLEVPAQT-----RITWLEGLAEIEWRLAGGGSE 367
Query: 337 YIQILDLGSIV 347
IQ L +V
Sbjct: 368 AIQTGGLVGVV 378
>gi|399215831|emb|CCF72519.1| unnamed protein product [Babesia microti strain RI]
Length = 347
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 126/334 (37%), Positives = 182/334 (54%), Gaps = 21/334 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW EKYRP +D +I +++++ +K +PH LF+GPPGTGKTST++A L+G
Sbjct: 6 LPWTEKYRPPDLDSIISHKDIINTIKSFTEVGQIPHLLFHGPPGTGKTSTILAISKHLYG 65
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEADS 148
+ +LELNASDDRGI V+RDK+KTFA+ S N + K++ILDEAD
Sbjct: 66 NYANVYVLELNASDDRGINVVRDKIKTFAEALNRFVPSSDNPANQVKTNLKLIILDEADQ 125
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT+A+Q ALRR ME K+ RFCLICNY+ II P+ SRC+ FRF PL EN + R I
Sbjct: 126 MTNASQGALRRIMEIYAKNVRFCLICNYMHKIISPIQSRCTGFRFSPLDENDLRRRTLEI 185
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK---GGEGIVN-EDVLEVTGV-- 262
E + + L L+E + GDMR+ + Q A K I++ D+L +G
Sbjct: 186 ATNEGITLEENGLSALIEIAQGDMRKVLNTFQIAAMSKLDSQDRNIIDVNDILNASGTPL 245
Query: 263 ------IPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 316
I N ++ + Q++ E L+ YS L + +++ +
Sbjct: 246 EDEVKSIFNALVQSTFS-ECIQIIRHVQE---LKGYSLQDLVTCLYKLIIKIDWPTIVIV 301
Query: 317 ALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
LI+ ++A+ RL GA+E IQI L S +A
Sbjct: 302 QLII-RMADIEERLATGANENIQICALVSAFTEA 334
>gi|66359384|ref|XP_626870.1| replication factor RFC3 AAA+ ATpase [Cryptosporidium parvum Iowa
II]
gi|46228358|gb|EAK89257.1| replication factor RFC3 AAA+ ATpase [Cryptosporidium parvum Iowa
II]
Length = 383
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 126/361 (34%), Positives = 191/361 (52%), Gaps = 48/361 (13%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
K +PWVEKYRP + D++ +++++ ++K +S LPH LF+GPPGTGKTST+ A
Sbjct: 6 KMEEAQLPWVEKYRPSGLQDLLSHKDIINTIEKFISSGQLPHLLFHGPPGTGKTSTIHAI 65
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP------------ 134
++ D + +LELNASDDRGI V+RD +K+F++ ++ N G
Sbjct: 66 SKCIYKDRKYQMVLELNASDDRGINVVRDAIKSFSESASTTLNHSGGTNSNIEDIEMSDV 125
Query: 135 -----------CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
C K++ILDEAD MT AQ ALRR ME+ ++ RFC+ICNYV+ I
Sbjct: 126 STRNLDCNKSLCENIKLIILDEADMMTSTAQMALRRIMERYSEHVRFCIICNYVNKITPA 185
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRC++FRF PL + R+ I E + + E+L+++S GDMR+ + LQSC+
Sbjct: 186 LQSRCTRFRFSPLPIEDIRNRISEIALSERIFITREGQESLIKSSRGDMRKVLNVLQSCS 245
Query: 244 --------------RLKGG--EGI---VNEDVLEVTGVIPNP----WIEKLLKVDSFQVL 280
L G EG+ +NE+++ IP +I +L +SF
Sbjct: 246 MSNYGNIEKHKDSGELNGASIEGLITYINEEMIHRILGIPTKSELDYIFGILSRESFSSG 305
Query: 281 EKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
+++ E YS + + M A + D+ L++ +LA+ RL GASE IQ
Sbjct: 306 FSALQNSQNENGYSTQDFVNGLYSKSMEA-NWPDEVVPLLMRRLADIEYRLSRGASESIQ 364
Query: 340 I 340
+
Sbjct: 365 L 365
>gi|194306567|ref|NP_853556.2| replication factor C subunit 5 isoform 2 [Homo sapiens]
gi|193787684|dbj|BAG52890.1| unnamed protein product [Homo sapiens]
Length = 319
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 134/320 (41%), Positives = 186/320 (58%), Gaps = 29/320 (9%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM- 94
VEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A QL+ D
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 61
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ +LELNASDDRGI +IR + +FA T + F + FK+VILDEAD+MT AQ
Sbjct: 62 FGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEADAMTQDAQ 114
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+++ E+E V
Sbjct: 115 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKV 174
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
++ LV S GDMRRA+ LQS G + E V TG +P LK
Sbjct: 175 DISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP-----LKS 224
Query: 275 DSFQVLEKYIEDLILEAY-SATQLFD----QFHDIV------MSASSLSDKQKALILEKL 323
D +L+ + AY + T+L HDI+ + + +L K+
Sbjct: 225 DIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSVRIHLLTKM 284
Query: 324 AECNARLQDGASEYIQILDL 343
A+ RL G +E IQ+ L
Sbjct: 285 ADIEYRLSVGTNEKIQLSSL 304
>gi|242019775|ref|XP_002430334.1| Replication factor C subunit, putative [Pediculus humanus corporis]
gi|212515458|gb|EEB17596.1| Replication factor C subunit, putative [Pediculus humanus corporis]
Length = 340
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 131/335 (39%), Positives = 188/335 (56%), Gaps = 29/335 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ +DD+I Q +V+ ++K +S LPH LFYGPPGTGKT+T++A L+
Sbjct: 13 MPWVEKYRPQKLDDLISQDYIVNTIRKLISHKQLPHLLFYGPPGTGKTTTILACAKVLYT 72
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI +R + FA T + F Q G K++ILDEAD+MTH
Sbjct: 73 PAQFASMVLELNASDDRGIGTVRGAILDFAS-TKTMF-QGG-----VKLIILDEADAMTH 125
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR MEK T + RFC+ICNY+ II + SRC+KFRF PL +L RL+Y+ EQ
Sbjct: 126 DAQNALRRIMEKYTANVRFCIICNYLGKIIPAIQSRCTKFRFAPLDSKEILPRLEYVIEQ 185
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + + ++ GDMR+ + LQS + E VNE+ V + +P
Sbjct: 186 EKIKISDDGKQAVLTLGQGDMRKVLNILQS-TFVSFSE--VNEE--NVYTCVGHP----- 235
Query: 272 LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS-----------ASSLSDKQKALIL 320
L+ D F++L+ + D + ++Y Q + +S L K L+L
Sbjct: 236 LQCDIFEMLQSLLNDNLSDSYKKIQTIKTLKGLALSDIVTELHTWVHKLELPSKVVCLLL 295
Query: 321 EKLAECNARLQDGASEYIQILDLGSIVIKANKTAV 355
L++ L +G+SE I++ L S KA +V
Sbjct: 296 ISLSDIEYNLNNGSSENIELGKLLSAFYKARTLSV 330
>gi|426201141|gb|EKV51064.1| hypothetical protein AGABI2DRAFT_189375 [Agaricus bisporus var.
bisporus H97]
Length = 341
Score = 218 bits (555), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 132/343 (38%), Positives = 190/343 (55%), Gaps = 19/343 (5%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+S + + + T +PWVEKYRPK +DDV+ + + LK + PH + G P
Sbjct: 3 TSKGKATNGNAATDAYELPWVEKYRPKVLDDVVGNSDTIERLKVIARDGNCPHLIISGLP 62
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G GKT+++ HQL GD Y+E +LELNASD+RGI+V+R K+K FAQ+ +
Sbjct: 63 GIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIEVVRTKIKQFAQKKVT--------L 114
Query: 136 PP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PP KIVILDEADSMT AQ ALRRTME + +TRFCL CN + II+P+ SRC+ R+
Sbjct: 115 PPGRHKIVILDEADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRY 174
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
L + +L RL ICE+E V + L L+ TS GDMR+AI LQS G G V+
Sbjct: 175 AKLRDQEILKRLLEICEEEDVKYNDDGLTALIFTSEGDMRQAINNLQSTF---SGFGFVS 231
Query: 254 EDVLEVTGVIPNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA 308
D + P+P I LK D + L K I++L + YSA + +V +
Sbjct: 232 GDNVFKICDQPHPIVVQAAIRSCLKGDVDEALGK-IKELWDQGYSAVDIVVTLFRVVKTF 290
Query: 309 SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
+ + K ++++ + R+ +G +Q+ L + + K N
Sbjct: 291 DEVPEYTKLEFIKEIGFTHMRILEGVGTLVQLAGLVARLCKMN 333
>gi|121719320|ref|XP_001276359.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
gi|119404557|gb|EAW14933.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
clavatus NRRL 1]
Length = 395
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 102/215 (47%), Positives = 144/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNTLDDVSGHQDILTTINKFVEANRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA + + G +K++ILDEAD
Sbjct: 105 TSNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSASTGSSLASYKLIILDEAD 164
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + + +
Sbjct: 165 AMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVDH 224
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V +A+ +LV+ S GDMRRA+ LQ+C
Sbjct: 225 VIEKEQVQIQPEAVSSLVKLSKGDMRRALNVLQAC 259
>gi|448450551|ref|ZP_21592370.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
gi|448522065|ref|ZP_21618330.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445702339|gb|ELZ54293.1| replication factor C small subunit [Halorubrum distributum JCM
10118]
gi|445811665|gb|EMA61668.1| replication factor C small subunit [Halorubrum litoreum JCM 13561]
Length = 327
Score = 218 bits (555), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 181/314 (57%), Gaps = 17/314 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP+T+DD+ Q+E+V L+ ++ D+PH LF GP G GKT+ A +++G D
Sbjct: 18 WIEKYRPQTLDDIHGQEEIVERLQSYIAQDDVPHLLFSGPAGVGKTTAATAIAREIYGED 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ + G F+IV LDE+DS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG---------DFRIVFLDESDSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + ++ I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVGGMVREIAAAEE 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 189 IEVTDAGVDALVYAADGDMRRAINSLQAAA--TTGDVVDEEAVYAITATARPEEIESMVT 246
Query: 274 ---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
F ++ L+ E + + DQ H V LS+++ ++E++ E + R
Sbjct: 247 DALNGDFARARSTLDTLLTETGMAGGDVIDQLHRSVWE-FELSEREAVRLMERIGEADYR 305
Query: 330 LQDGASEYIQILDL 343
+ +GA+E +Q+ L
Sbjct: 306 IAEGANEQVQLESL 319
>gi|358056280|dbj|GAA97763.1| hypothetical protein E5Q_04442 [Mixia osmundae IAM 14324]
Length = 382
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 132/339 (38%), Positives = 187/339 (55%), Gaps = 19/339 (5%)
Query: 14 APSSSKTSVSTSGKTRNKPV----PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHF 69
A + SK +G T + PV PWVEKYRP +DD++ +E + LK + PH
Sbjct: 38 AMTESKGKGRANGDTDDGPVAYEMPWVEKYRPAVLDDIVGNEETIERLKVIARDGNCPHI 97
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN 129
+ G PG GKT++++A H L G Y+E +LELNASD+RGI V+R+++KTFAQ+ +
Sbjct: 98 IISGQPGIGKTTSILALAHALLGKAYKEGVLELNASDERGIDVVRNRIKTFAQKKVT--- 154
Query: 130 QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
P KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC+
Sbjct: 155 ---LPAGRHKIIILDEADSMTPGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCA 211
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
R+ L++ +L R+ IC+ E V AL +L+ TS GDMR+AI LQS G
Sbjct: 212 ILRYARLSDKQLLKRIVEICDMEQVKYSDDALASLIFTSDGDMRQAINNLQST---YSGF 268
Query: 250 GIV-NEDVLEVTG----VIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
G V +E V +V V N IE K D V + +E L + YSA + +
Sbjct: 269 GFVSSEAVFKVCDQPHPVTVNKMIEACAKGD-IDVSMEMLEKLWHQGYSAVDIVTTIFRV 327
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
S L + K ++++ + R+ +G S Q+ L
Sbjct: 328 TKSTDVLPEYTKLEFIKEIGFSHMRILEGVSTLTQLSGL 366
>gi|340720472|ref|XP_003398661.1| PREDICTED: replication factor C subunit 5-like isoform 1 [Bombus
terrestris]
gi|340720474|ref|XP_003398662.1| PREDICTED: replication factor C subunit 5-like isoform 2 [Bombus
terrestris]
Length = 329
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 126/323 (39%), Positives = 188/323 (58%), Gaps = 17/323 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T T+ +PWVEKYRPK +DD+I +E++ + K + LPH LFYGPPGTGKTST+
Sbjct: 2 TEKPTQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTI 61
Query: 84 IAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A +L+ + +LE+NASDDRGI ++R ++ +FA T + + FK++I
Sbjct: 62 LACARKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFAS-TGTMYRSG------FKLII 114
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T + RFC+ICNY+S II L SRC+KFRF PL+ + +L
Sbjct: 115 LDEADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQIL 174
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL I ++E++ + L+ SGGDMR+ + LQS + + E+V G
Sbjct: 175 PRLDAIIKEENLNVSEDGKQALITLSGGDMRKVLNVLQSTSL--AFSAVTEENVYSCVGH 232
Query: 263 IPNPW----IEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQKA 317
P P I L +S+++ I+D+ L+ A Q + + H + ++ D
Sbjct: 233 -PLPIDIKNIINWLLNESYELCYCKIQDIKLKKGLALQDILTELH-LFVNKIEFPDSVLI 290
Query: 318 LILEKLAECNARLQDGASEYIQI 340
++ KLAE R+ G SE +Q+
Sbjct: 291 DLVIKLAEIEKRVSIGCSEAVQL 313
>gi|156062848|ref|XP_001597346.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980]
gi|154696876|gb|EDN96614.1| hypothetical protein SS1G_01540 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 390
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 146/213 (68%), Gaps = 4/213 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++DV Q++++ + K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPHLLFYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSM 149
R+ +LELNASDDRGI+V+R+++KTFA T F+ + P +K++ILDEAD+M
Sbjct: 105 PKNMRQMVLELNASDDRGIEVVREQIKTFAS-TKQIFSMNSATVSPGAYKLIILDEADAM 163
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E+ + + +
Sbjct: 164 TSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALLSRCTRFRFSPLKESDIRVLVDKVI 223
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+E+V + +A + LV S GDMRRA+ LQ+C
Sbjct: 224 MEENVQINAEATDALVRLSKGDMRRALNVLQAC 256
>gi|432872493|ref|XP_004072116.1| PREDICTED: replication factor C subunit 5-like [Oryzias latipes]
Length = 340
Score = 218 bits (554), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 113/247 (45%), Positives = 165/247 (66%), Gaps = 16/247 (6%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S+S+T + ++RN +PWVEKYRP+ +DD+I ++++S +++ + LPH L YGPP
Sbjct: 3 STSRTPL----QSRN--LPWVEKYRPQKLDDLISHRDILSTIQRFVREDRLPHLLLYGPP 56
Query: 76 GTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
GTGKTST++A QL+ D + +LELNASDDRGI V+R + +FA T + F +
Sbjct: 57 GTGKTSTILACARQLYKDKEFNSMVLELNASDDRGIDVVRGPILSFAS-TRTIFKKG--- 112
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF
Sbjct: 113 ---FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFG 169
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL+ + M+ RL+++ ++ES+ ++ +V S GDMRR++ LQS + G + +
Sbjct: 170 PLSADQMIPRLRHVIQEESIDITEDGMKAIVTLSSGDMRRSLNVLQSTSMAYG--KVTED 227
Query: 255 DVLEVTG 261
V TG
Sbjct: 228 SVYTCTG 234
>gi|428167624|gb|EKX36580.1| replication factor C subunit 4 [Guillardia theta CCMP2712]
Length = 350
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 185/320 (57%), Gaps = 14/320 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PW+EKYRP+T++DV+ +++++ L + L LPH L YGPPGTGKTST++A ++FG
Sbjct: 23 PWIEKYRPETLNDVVAHKDILTTLDRFLEQDRLPHLLLYGPPGTGKTSTVLALAKKVFGP 82
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC-PPFKIVILDEADSMTHA 152
Y+ LELNASDDRGI V++ ++K FA T + F C FK++ILDEAD+MT
Sbjct: 83 KYKSMTLELNASDDRGIDVVKKEIKDFA-GTRTIFGLIVLLCRTGFKMIILDEADNMTQT 141
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E T + RFCLICNYV+ II L SRC++FRF PL + L+ I ++E
Sbjct: 142 AQFALRRIIENYTANARFCLICNYVNKIIPALQSRCTRFRFSPLTSADIQGNLERILDKE 201
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP----WI 268
++ AL+ + + SGGDMR+ + LQS + + + E + E TG PNP WI
Sbjct: 202 NIKATPDALKAVEKISGGDMRKCLNILQSSSM--ASKEVTVESIYECTGD-PNPSDVMWI 258
Query: 269 EKLLKVDSFQ-VLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
L DSF+ K E + + + H+ ++ L +LE L++
Sbjct: 259 THSLCNDSFEDCYHKIFEIQREKGLALIDIVRAVHEQIIK-HDLPSVPFCRLLESLSDLE 317
Query: 328 ARLQDGASEYIQILDLGSIV 347
RL +E IQ LGS V
Sbjct: 318 YRLTAATNEKIQ---LGSFV 334
>gi|448737973|ref|ZP_21720004.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
gi|445802557|gb|EMA52861.1| replication factor C small subunit [Halococcus thailandensis JCM
13552]
Length = 326
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 179/317 (56%), Gaps = 16/317 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
TSG + W+EKYRP + +V Q ++ L+ ++ DLPH LF GP G GKT++
Sbjct: 4 TSGSGGRGEI-WIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSA 62
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
+A +++GD +RE LELNASD+RGI V+RD++K FA+ + G++ ++++ L
Sbjct: 63 MAIAREIYGDDWRENFLELNASDERGIDVVRDRIKNFARTSFGGYD--------YRVIFL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD++T AQ+ALRRTME+ +TRF L CNY + II P+ SRC+ FRF PL E +
Sbjct: 115 DEADALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAE 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
++ I +E + ++ LV + GDMR+AI LQ+ A GE + E V +T
Sbjct: 175 YVERIAGEEGIEITDDGVDALVYAADGDMRKAINGLQAAATT--GETVDEEAVYAITAAA 232
Query: 264 PNPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI 319
IE +++ F ++DL+ + + DQ H S L D+ +
Sbjct: 233 RPEQIETMVQHAIGGDFTAARAKLDDLLTDWGLGGGDVIDQLHRSAWS-FELDDQATVRL 291
Query: 320 LEKLAECNARLQDGASE 336
LE++ E + R+ GA+E
Sbjct: 292 LERVGETDYRITQGANE 308
>gi|350412747|ref|XP_003489747.1| PREDICTED: replication factor C subunit 5-like [Bombus impatiens]
Length = 329
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 126/323 (39%), Positives = 188/323 (58%), Gaps = 17/323 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T T+ +PWVEKYRPK +DD+I +E++ + K + LPH LFYGPPGTGKTST+
Sbjct: 2 TEKPTQTTNLPWVEKYRPKKLDDLISHEEIIKTINKFIDENQLPHLLFYGPPGTGKTSTI 61
Query: 84 IAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A +L+ + +LE+NASDDRGI ++R ++ +FA T + + FK++I
Sbjct: 62 LACARKLYTPAQFNSMVLEMNASDDRGIGIVRGQILSFAS-TGTMYRSG------FKLII 114
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR +EK T + RFC+ICNY+S II L SRC+KFRF PL+ + +L
Sbjct: 115 LDEADAMTKDAQNALRRIIEKYTDNVRFCIICNYLSQIIPALQSRCTKFRFGPLSTDQIL 174
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262
RL I ++E++ + L+ SGGDMR+ + LQS + + E+V G
Sbjct: 175 PRLDTIIKEENLNVSEDGKQALITLSGGDMRKVLNVLQSTSL--AFSAVTEENVYSCVGH 232
Query: 263 IPNPW----IEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQKA 317
P P I L +S+++ I+D+ L+ A Q + + H + ++ D
Sbjct: 233 -PLPIDIKNIINWLLNESYELCYCKIQDIKLKKGLALQDILTELH-LFVNKIEFPDSILI 290
Query: 318 LILEKLAECNARLQDGASEYIQI 340
++ KLAE R+ G SE +Q+
Sbjct: 291 DLVIKLAEIEKRVSIGCSEAVQL 313
>gi|433589372|ref|YP_007278868.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|448335506|ref|ZP_21524650.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
gi|433304152|gb|AGB29964.1| DNA polymerase III, gamma/tau subunit [Natrinema pellirubrum DSM
15624]
gi|445616896|gb|ELY70508.1| replication factor C small subunit [Natrinema pellirubrum DSM
15624]
Length = 330
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 122/329 (37%), Positives = 186/329 (56%), Gaps = 19/329 (5%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ + D+ ++V L+ + DLPH LF GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
EN + +++ I E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 ENAIEAQVREIAANEEIDVTDDGVDALVFAADGDMRKAINGLQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPNPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSD 313
+T +E +++ +D F +EDL+ E + + DQ H SA
Sbjct: 232 AITATARPEEVEAMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDI 288
Query: 314 KQKALI--LEKLAECNARLQDGASEYIQI 340
++A + LE+L E + R+ +GA+E +Q+
Sbjct: 289 PERATVRLLERLGEVDYRITEGANERLQL 317
>gi|76801102|ref|YP_326110.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
gi|83288436|sp|Q3ITJ2.1|RFCS_NATPD RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|76556967|emb|CAI48541.1| replication factor C small subunit [Natronomonas pharaonis DSM
2160]
Length = 325
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 179/305 (58%), Gaps = 15/305 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DD++ + + LK+ ++ DLPH LF GP G GKT+ A +++GD
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD RGI V+RD++K+FA+ + G++ +I+ LDEAD++T AQ
Sbjct: 74 WRENFLELNASDQRGIDVVRDRIKSFARASFGGYDH--------RIIFLDEADALTSDAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL + + +++ I + E +
Sbjct: 126 SALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGI 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL-- 272
++ LV + GDMR+AI LQ+ A + G + E V +T I +++
Sbjct: 186 ELTDDGVDALVYAADGDMRKAINGLQAAAVMGG--TVDEEAVYTITSTARPEEIREMVTE 243
Query: 273 KVDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F +E L+ + + + DQ H V L +++ ++E++ E + R+
Sbjct: 244 AMDGDFTAARSQLETLLTDVGIAGGDIIDQLHRSVWE-FDLEEREAVQLMERIGEADYRI 302
Query: 331 QDGAS 335
GAS
Sbjct: 303 TAGAS 307
>gi|448498600|ref|ZP_21610886.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
gi|445698349|gb|ELZ50394.1| replication factor C small subunit [Halorubrum coriense DSM 10284]
Length = 327
Score = 218 bits (554), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 119/310 (38%), Positives = 179/310 (57%), Gaps = 17/310 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP+T+DDV Q+E+V L+ ++ D+PH LF GP G GKT+ A +++G D
Sbjct: 18 WIEKYRPQTLDDVHGQEEIVERLQSYIAQDDVPHLLFSGPAGIGKTTAATAIAREIYGED 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ + G F+IV LDEADS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFARSSFGG---------DFRIVFLDEADSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + ++ I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDEAVSGMVREIAAAEE 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ ++ LV + GDMRRAI LQ+ A G+ + + V +T IE ++
Sbjct: 189 IEVTDAGVDALVYAADGDMRRAINSLQAAA--TTGDVVDEKAVYAITATARPEEIESMVT 246
Query: 274 ---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
F ++ L+ E + + DQ H V LS+++ ++E++ E + R
Sbjct: 247 DALSGDFARARSTLDTLLTETGMAGGDVIDQLHRSVWE-FDLSEREAVRLMERIGEADYR 305
Query: 330 LQDGASEYIQ 339
+ +GA+E +Q
Sbjct: 306 IAEGANEQVQ 315
>gi|440638884|gb|ELR08803.1| replication factor C subunit 3/5 [Geomyces destructans 20631-21]
Length = 393
Score = 217 bits (553), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 132/356 (37%), Positives = 189/356 (53%), Gaps = 35/356 (9%)
Query: 17 SSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFL 70
SSK + N PV PWVEKYRP T++DV Q++++ + + + LPH L
Sbjct: 24 SSKQATQGKRSAANLPVEAEDTLPWVEKYRPDTLEDVSGHQDIIATINRFVETNRLPHLL 83
Query: 71 FYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TA 125
YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTFA ++
Sbjct: 84 LYGPPGTGKTSTVLALARRIYGVKNMRQMVLELNASDDRGIDVVREQIKTFASTRQIFSS 143
Query: 126 SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
+ GK +K++ILDEAD+MT AQ ALRR MEK T +TRFC+I NY + L
Sbjct: 144 APSEASGKSMATYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALL 203
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA-- 243
SRC++FRF PL E + + + E+E+V +A E L + S GDMRRA+ LQ+C
Sbjct: 204 SRCTRFRFSPLKERDIRVLVDKVIEEETVNITREATEALTKLSKGDMRRALNVLQACHAS 263
Query: 244 ----RLKG----GEGIVNEDVLEVTGVI-----PNP-----WIEKLLKVDSFQVLEKYIE 285
+KG E + + + T + P P ++ LLK I
Sbjct: 264 STPLHIKGQPIPKESEIIRNKITTTTIYECIASPEPADISLIVDTLLKTSDVSSCLSLIN 323
Query: 286 DLILEAYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDGASEYIQ 339
L+A L D I + L + +I ++ LAE RL G +E +Q
Sbjct: 324 --TLKANKGLALADIIASIAEELTKLETPAQTMITWMDGLAEVEYRLSGGGNEVVQ 377
>gi|162312520|ref|XP_001713099.1| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe 972h-]
gi|13431787|sp|O14003.2|RFC3_SCHPO RecName: Full=Replication factor C subunit 3; Short=Replication
factor C3
gi|4468733|emb|CAB38106.1| replication factor C subunit [Schizosaccharomyces pombe]
gi|5688939|dbj|BAA82745.1| Rfc3 [Schizosaccharomyces pombe]
gi|5688941|dbj|BAA82746.1| Rfc3 [Schizosaccharomyces pombe]
gi|159884003|emb|CAB39134.2| DNA replication factor C complex subunit Rfc3 [Schizosaccharomyces
pombe]
Length = 342
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 193/337 (57%), Gaps = 38/337 (11%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DV+ ++++S L+K +S +PH LFYGPPGTGKTST++A +++G
Sbjct: 23 LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYG 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +++ELNASDDRGI +R+++K FA T F FK++ILDEAD+MT A
Sbjct: 83 PNYRNQLMELNASDDRGIDAVREQIKNFA-STRQIF------ASTFKMIILDEADAMTLA 135
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+ RFC+ICNY++ I + SRC++FRF+PL + + ++ + E
Sbjct: 136 AQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSE 195
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI-----PNP- 266
D A ++ S GDMR+A+ LQ+C D ++V+ + P+P
Sbjct: 196 HCNIDPDAKMAVLRLSKGDMRKALNILQACH--------AAYDHIDVSAIYNCVGHPHPS 247
Query: 267 ---WIEKLLKVDSFQVLEKYIEDLILEAYSATQ-----LFDQFHDIVMSASSLSDKQKAL 318
+ K + D F + I + + A Q +F+ ++ + ++ K
Sbjct: 248 DIDYFLKSIMNDEFVIAFNTISSIKQQKGLALQDILTCIFEALDELEIKPNA-----KIF 302
Query: 319 ILEKLAECNARLQDGASEYIQILDLGSIVIKANKTAV 355
IL++LA R+ G SE IQ+ S +I + KT V
Sbjct: 303 ILDQLATIEHRMSFGCSEKIQL----SAMIASIKTGV 335
>gi|448357101|ref|ZP_21545808.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
gi|445650274|gb|ELZ03200.1| replication factor C small subunit [Natrialba chahannaoensis JCM
10990]
Length = 339
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 115/329 (34%), Positives = 189/329 (57%), Gaps = 19/329 (5%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+ ++ + ST+G+T W+EKYRP+ +D++ + +V L++ + DLPH +F GP
Sbjct: 14 TDTEVAESTAGRTE----VWIEKYRPERLDEIKGHENIVPRLQRYVEQDDLPHLMFAGPA 69
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
GTGKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 70 GTGKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARASFGGYDH----- 124
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF
Sbjct: 125 ---RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTQ 181
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L E + +++ I + + ++ LV + GDMR+AI LQ+ A + GE + E
Sbjct: 182 LTETAIEAQVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVDEET 239
Query: 256 VLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSL 311
V +T +E+++ F +EDL+ + + + DQ H +
Sbjct: 240 VFAITATARPEEVEQMVDQAIAGDFTAARASLEDLLTDRGLAGGDVIDQLHRSAWE-FDI 298
Query: 312 SDKQKALILEKLAECNARLQDGASEYIQI 340
+++ +LE+L E + R+ +GA+E +Q+
Sbjct: 299 PEQETVRLLEQLGEVDFRITEGANERLQL 327
>gi|326489719|dbj|BAK01840.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326531584|dbj|BAJ97796.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 359
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 131/340 (38%), Positives = 184/340 (54%), Gaps = 27/340 (7%)
Query: 11 GKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFL 70
G AP + K S K PWVEKYRP+++ DV +++V + + LPH L
Sbjct: 14 GAAAPPAFKGKAPLSAAAAVKSSPWVEKYRPQSLADVAAHRDIVDTIDRLTDENRLPHLL 73
Query: 71 FYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130
YGPPGTGKTST++A +++G Y ILELNASD+RGI V+R +++ FA + F
Sbjct: 74 LYGPPGTGKTSTILAVARKIYGSQYGNMILELNASDERGIGVVRQQIQDFASAHSLSFGA 133
Query: 131 DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
P K+V+LDEAD+MT AQ ALRR +EK T+STRF LICN+V+ II L SRC++
Sbjct: 134 K----PAVKLVLLDEADAMTKDAQFALRRVIEKYTRSTRFALICNHVNKIIPALQSRCTR 189
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
FRF PL + + RL++I + E + D L LV S GDMR+++ LQS +
Sbjct: 190 FRFAPLDGSHVSERLRHIIKSEGLDVDEGGLSALVRLSNGDMRKSLNILQSTH--MASQQ 247
Query: 251 IVNEDVLEVTGVIPNPW---IEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
I E V TG NP IE++ L + F K+I D+ + L D ++
Sbjct: 248 ITEEAVYLCTG---NPMPKDIEQIAFWLLNEPFSTSFKHIADMKMR--KGLALIDIIREV 302
Query: 305 VMSAS--SLSDKQKALILEKLAE--------CNARLQDGA 334
M + + ++ LA+ CN +LQ GA
Sbjct: 303 TMFVFKIKMPSSVRVKLINDLADIEYRLTFACNDKLQLGA 342
>gi|336252796|ref|YP_004595903.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
gi|335336785|gb|AEH36024.1| Replication factor C small subunit [Halopiger xanaduensis SH-6]
Length = 336
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 119/323 (36%), Positives = 187/323 (57%), Gaps = 23/323 (7%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T GKT W+EKYRP+ +D++ ++++ LK + DLPH +F GP GTGKT+
Sbjct: 18 TPGKTE----VWIEKYRPERLDEIKGHEDIIPRLKNYVEQDDLPHLMFAGPAGTGKTTAA 73
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
A +++ D +RE LELNASD RGI V+RD++K FA+ + G++ +I+ L
Sbjct: 74 QAIAREIYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH--------RIIFL 125
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L +N +
Sbjct: 126 DEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELTDNAIEA 185
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
+++ I + + ++ LV + GDMR+AI LQ+ A + GE + E V +T
Sbjct: 186 QVREIAADQDIEVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVDEETVFAITATA 243
Query: 264 PNPWIEKLL--KVDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI 319
+E+++ +D F +EDL+ + + + DQ H SA ++A +
Sbjct: 244 RPEEVEEMVGHAIDGDFTAARAALEDLLTDRGLAGGDVIDQLH---RSAWEFDIPEQATV 300
Query: 320 --LEKLAECNARLQDGASEYIQI 340
LE+L E + R+ +GA+E +Q+
Sbjct: 301 RLLERLGEVDYRITEGANERLQL 323
>gi|225426826|ref|XP_002283246.1| PREDICTED: replication factor C subunit 2 [Vitis vinifera]
gi|297742576|emb|CBI34725.3| unnamed protein product [Vitis vinifera]
Length = 330
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 131/332 (39%), Positives = 191/332 (57%), Gaps = 26/332 (7%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
+++S N +PWVEKYRP + D++ ++ VS L+ ++P+ + GPPGTGKT+
Sbjct: 1 MASSSSMSNYDMPWVEKYRPTKVADIVGNEDTVSRLQVIARDGNMPNLILSGPPGTGKTT 60
Query: 82 TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141
+++A H+L G YRE +LELNASDDRGI V+R+K+K FAQ+ + P KIV
Sbjct: 61 SVLALAHELLGANYREAVLELNASDDRGIDVVRNKIKMFAQKKVT------LPSGSHKIV 114
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEADSMT AQ ALRRTME + STRF L CN S II+P+ SRC+ RF L++ +
Sbjct: 115 ILDEADSMTTGAQQALRRTMEIYSNSTRFALACNISSKIIEPIQSRCAIVRFSRLSDQEI 174
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
L RL + E E V + LE ++ T+ GDMR+A+ LQ A G + E+V +V
Sbjct: 175 LGRLMVVVEAEKVPFVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKVCD 232
Query: 262 VIPNPW-IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFH---DIVMSASSL---SDK 314
P+P ++ +++ VLE +D Y QL+D + DI+ + + D
Sbjct: 233 Q-PHPLHVKNMVR----NVLEGKFDD---ACYGLKQLYDLGYSPTDIITTLFRIIKNYDM 284
Query: 315 QKALILEKLAE---CNARLQDGASEYIQILDL 343
+ L LE + E + R+ DG Y+Q+ L
Sbjct: 285 AEYLKLEFMKETGFAHMRICDGVGSYLQLCGL 316
>gi|392571020|gb|EIW64192.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 345
Score = 217 bits (553), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 132/346 (38%), Positives = 191/346 (55%), Gaps = 22/346 (6%)
Query: 16 SSSKTSVSTSGKTRNKP---VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
S++K +G N P +PWVEKYRP+ +DDV+ + + LK + PH +
Sbjct: 4 STAKGKAPANGNAANLPNYELPWVEKYRPQVLDDVVGNTDTIERLKIIARDGNCPHIIIS 63
Query: 73 GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
G PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R+K+K+FAQ+ +
Sbjct: 64 GMPGIGKTTSIHCLAHQLLGDGYKEGVLELNASDERGIDVVRNKIKSFAQKKVT------ 117
Query: 133 KPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PP KIVILDEADSMT AQ ALRRTME +TRF L CN + II+P+ SRC+
Sbjct: 118 --LPPGRHKIVILDEADSMTAGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAI 175
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
R+ L + +L RL ICE E V + LE L+ T+ GDMR+AI LQS G G
Sbjct: 176 LRYSKLRDQEVLKRLLEICEMEKVEYSNEGLEALIFTAEGDMRQAINNLQSTW---SGFG 232
Query: 251 IVNEDVLEVTGVIPNP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV 305
V+ D + P+P I LK D ++K +++L + YSA + +V
Sbjct: 233 FVSGDNVFKVCDQPHPITVQAMIRACLKGDIEGAMDK-LDELWDQGYSAVDIVVTVFRVV 291
Query: 306 MSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
+ + + K ++++ + R+ +G IQ+ L + + K N
Sbjct: 292 KTFDEIPEYTKLEYIKEIGWTHMRILEGVGTLIQLGGLMARLCKMN 337
>gi|385301010|gb|EIF45243.1| rfc3p [Dekkera bruxellensis AWRI1499]
Length = 330
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 186/320 (58%), Gaps = 28/320 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ +D V QQE + ++K +PH LFYGPPG+GKTST+IA +++G
Sbjct: 10 LPWVEKYRPQNLDQVYGQQETIQTIRKFAQDGRIPHLLFYGPPGSGKTSTIIALAREIYG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADSM 149
YR +LELNASDDRGI +RD++K FA Q +SG FK+VILDEAD+M
Sbjct: 70 KNYRNMVLELNASDDRGIDXVRDQIKNFASTRQIFSSG----------FKLVILDEADAM 119
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T+ AQ ALRR +EK TK+TRFC++ NY I L SRC++FRF PLA + + R+ +
Sbjct: 120 TNTAQNALRRIIEKYTKNTRFCILANYAHKINPALMSRCTRFRFSPLAISAIEERVDTVI 179
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVL-EVTGVIPNP- 266
++E + + A + LV S GDMR+A+ LQ+C A L E + D++ E G P P
Sbjct: 180 KEEKLKIEKXAEKCLVALSKGDMRKALNVLQACAAALDKPEDTIXVDMIYECVGA-PRPK 238
Query: 267 WIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
IE +L DS+ V+ K + E + L + F DI ++ L + +
Sbjct: 239 SIEVILNAIMERDWTDSYSVMNKIRK---TEGLALIDLIEGFMDI-LAKYELKPLTRIKM 294
Query: 320 LEKLAECNARLQDGASEYIQ 339
++ L + + G S+ IQ
Sbjct: 295 IQGLGDIEYGISKGGSDKIQ 314
>gi|195384914|ref|XP_002051157.1| GJ14606 [Drosophila virilis]
gi|194147614|gb|EDW63312.1| GJ14606 [Drosophila virilis]
Length = 332
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 130/320 (40%), Positives = 180/320 (56%), Gaps = 18/320 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++S + + ++ LPH LFYGPPGTGKTST++A QL+
Sbjct: 11 MPWVEKYRPNCLDDLISHEEIISTINRFINQKQLPHLLFYGPPGTGKTSTILACARQLYS 70
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 71 PAHFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CGTFKLIILDEADAMTN 123
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T++ RFC+ICNY+S II L SRC++FRF PL+ ML RL + ++
Sbjct: 124 DAQNALRRIIEKYTENVRFCVICNYLSKIIPALQSRCTRFRFAPLSPEQMLPRLNKVIQE 183
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEK 270
E+V L+ + GDMR+ + LQS + IVNED V G IE
Sbjct: 184 ENVNVTDDGKNALLTLAKGDMRKVLNVLQSTSM---AFDIVNEDNVYMCVGYPLRSEIEH 240
Query: 271 LLKVDSFQVLEKYIEDLILEAYSATQL-----FDQFHDIVMSASSLSDKQKALILEKLAE 325
+L+ D I EA S L + H +M LI+ K+A+
Sbjct: 241 MLQTLLSAATFDSAFDTIEEAKSKRGLALEDIVTELHLFIMRLELPMSVMNKLIV-KMAQ 299
Query: 326 CNARLQDGASEYIQILDLGS 345
RL G +E Q L S
Sbjct: 300 VEERLTKGCTETAQTAALVS 319
>gi|397772266|ref|YP_006539812.1| Replication factor C [Natrinema sp. J7-2]
gi|397681359|gb|AFO55736.1| Replication factor C [Natrinema sp. J7-2]
Length = 360
Score = 217 bits (552), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 190/331 (57%), Gaps = 23/331 (6%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+ ++ + ST GKT W+EKYRP+ ++D+ ++V LK + DLPH LF GP
Sbjct: 34 ADAEAAESTPGKTE----VWIEKYRPERLNDIKGHTDIVPRLKNYVEQDDLPHLLFAGPA 89
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
GTGKT+ + +++ D ++E LELNASD RGI V+RD++K FA+ + G++
Sbjct: 90 GTGKTTAAKSIAREVYDDDWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH----- 144
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF
Sbjct: 145 ---RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTE 201
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L + + +++ I E + ++ LV + GDMR+AI LQ+ A + GE + E
Sbjct: 202 LTADAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVDEET 259
Query: 256 VLEVTGVIPNPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSL 311
V +T +E +++ +D F +EDL+ E + + DQ H SA
Sbjct: 260 VFAITATARPEEVEAMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH---RSAWEF 316
Query: 312 SDKQKALI--LEKLAECNARLQDGASEYIQI 340
++A + LE+L E + R+ +GA+E +Q+
Sbjct: 317 DVPERATVRLLERLGEVDYRITEGANERLQL 347
>gi|367036204|ref|XP_003667384.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
gi|347014657|gb|AEO62139.1| hypothetical protein MYCTH_2313161 [Myceliophthora thermophila ATCC
42464]
Length = 389
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 191/363 (52%), Gaps = 38/363 (10%)
Query: 11 GKDAPSSSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA 64
KD SS + N PV PWVEKYRP T+ DV Q++++ + K +
Sbjct: 15 SKDITFSSDNTAKGKRSAANLPVEAEDSLPWVEKYRPATLADVSGHQDILATINKFVDSN 74
Query: 65 DLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ 123
LPH LFYGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTFA
Sbjct: 75 RLPHLLFYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGIDVVREQIKTFAS- 133
Query: 124 TASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
T F+ FK++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY
Sbjct: 134 TKQIFSMSASATRSGIANFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYSHK 193
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
+ L SRC++FRF PL E + + + E+E+V +A ++LV S GDMRRA+ L
Sbjct: 194 LSPALLSRCTRFRFSPLKEQDIRGLIDKVIEEENVKIMPEATDSLVRLSKGDMRRALNVL 253
Query: 240 QSC----ARLKGGEG------------IVNEDVLEVTGVIPNPWIEKLLKV-----DSFQ 278
Q+C L+ EG I E + P I+K+L D
Sbjct: 254 QACHASSTPLQPREGPKIAEKDIVRETITTETIYNCVAAPPPDAIKKILNTLLSTSDVTS 313
Query: 279 VLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDGASE 336
L + + + + + VM L K + +I L+ LAE R+ GA+E
Sbjct: 314 CLSTINTLKVAQGLALADIITALSEEVM---KLEVKPQVMITWLDTLAEIEHRVSSGANE 370
Query: 337 YIQ 339
IQ
Sbjct: 371 AIQ 373
>gi|291407082|ref|XP_002719834.1| PREDICTED: replication factor C 5 [Oryctolagus cuniculus]
Length = 342
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 133/335 (39%), Positives = 187/335 (55%), Gaps = 29/335 (8%)
Query: 21 SVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
SV T + + VEKYRP+T++D+I ++++S ++K +S LPH L YGPPGTGKT
Sbjct: 10 SVPTQVDIGGRQLDRVEKYRPQTLNDLISHRDILSTIQKFISEDRLPHLLLYGPPGTGKT 69
Query: 81 STMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFK 139
ST++A QL+ D + +LELNASDDRGI ++R + +FA T + F + FK
Sbjct: 70 STILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FK 122
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL
Sbjct: 123 LVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPE 182
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
M+ RL+++ E+E V ++ L+ S GDMRRA+ LQS G + E V
Sbjct: 183 LMVPRLEHVVEEEKVYVSEDGMKALITLSSGDMRRALNILQSTNMAFG--KVTEETVYTC 240
Query: 260 TGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQ-----FHDIV------MSA 308
TG +P LK D +L+ + AY HDI+ +
Sbjct: 241 TG---HP-----LKSDIANILDWMLNQDFTTAYRNIMELKTVKGLALHDILTEIHLFVHR 292
Query: 309 SSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G +E IQ+ L
Sbjct: 293 VDFPSSVRIHLLTKMADIEYRLAVGTNEKIQLSSL 327
>gi|304314452|ref|YP_003849599.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
gi|302587911|gb|ADL58286.1| replication factor C, small subunit [Methanothermobacter
marburgensis str. Marburg]
Length = 317
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 119/315 (37%), Positives = 181/315 (57%), Gaps = 19/315 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q+ ++ LK+ + +P+ +F GP G GKT+T +A ++ G+
Sbjct: 4 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEERSMPNLMFTGPAGVGKTTTALALAREILGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R+ LELNASD RGI +R +K F + G PF+I+ LDE D+MT A
Sbjct: 64 YWRQNFLELNASDARGIDTVRTSIKNFCRLKPVG--------APFRIIFLDEVDNMTKDA 115
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF PL +++RL+YI EQE
Sbjct: 116 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGRHIISRLEYIAEQEG 175
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL-- 271
+ + +AL+T+V + GD+R+AI LQS A L GE I + EV + K+
Sbjct: 176 LEYEPQALDTVVYFAEGDLRKAINILQSAASL--GEKITESSIYEVVSRARPKDVRKMIM 233
Query: 272 --LKVDSFQVLEKYIEDLILEAYSA----TQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
L + + E ++L+ S TQ++ + + M S ++ LI E + E
Sbjct: 234 TILDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGSIEGERYIKLI-EAVGE 292
Query: 326 CNARLQDGASEYIQI 340
+ R+++GA+ IQ+
Sbjct: 293 YDFRIREGANPRIQL 307
>gi|126137263|ref|XP_001385155.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
gi|126092377|gb|ABN67126.1| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
Length = 322
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 126/314 (40%), Positives = 186/314 (59%), Gaps = 22/314 (7%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
VEKYRP T+D+V Q+E+V +KK LPH LFYGPPGTGKTST+IA +++G Y
Sbjct: 3 VEKYRPSTLDEVYGQEEIVQTVKKFAHENRLPHLLFYGPPGTGKTSTIIALAREIYGTNY 62
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
+ +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT AQ
Sbjct: 63 KNMVLELNASDDRGIDVVRNQIKNFA-STMQIFSRG------FKLIILDEADAMTAVAQN 115
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
+LRR +EK TK+TRFC++ NY + L SRC++FRF P++E+ + R+Q + +ES+
Sbjct: 116 SLRRIIEKYTKNTRFCILANYAHKLNPALLSRCTRFRFHPISEDAIKDRIQNVIIKESLK 175
Query: 216 CDFKALETLVETSGGDMRRAITCLQSC--ARLKGGEGIVNEDVLEVTGVIPNP-----WI 268
D A L++ S GDMRRA+ LQ+C A E I + + E G P+P +
Sbjct: 176 IDPPAEAALLKLSKGDMRRALNVLQACKSAVDSADEEITEDMIYECVGA-PHPKDIEVVL 234
Query: 269 EKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
+ +LK D ++ + KY + + L F +I ++ L K + I + L+E
Sbjct: 235 DSILKDDWTTAYITINKY---KTTKGLALIDLISGFIEI-LNQYKLQGKTRIEIFKGLSE 290
Query: 326 CNARLQDGASEYIQ 339
+ G ++ IQ
Sbjct: 291 IEYGISRGGNDKIQ 304
>gi|347832701|emb|CCD48398.1| similar to replication factor C subunit 3 [Botryotinia fuckeliana]
Length = 390
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 150/237 (63%), Gaps = 5/237 (2%)
Query: 10 LGKDAPSS-SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
G DA +S K S + +PWVEKYRP T++DV Q++++ + K + LPH
Sbjct: 22 FGSDATTSKGKRSAANLPVEAEDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPH 81
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
LFYGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTFA T
Sbjct: 82 LLFYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFAS-TKQI 140
Query: 128 FNQDGKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
F P +K++ILDEAD+MT AQ ALRR MEK T +TRFC+I NY + L
Sbjct: 141 FASKSSSTSPGAYKLIILDEADAMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALL 200
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
SRC++FRF PL E + + + +E+V + +A + LV S GDMRRA+ LQ+C
Sbjct: 201 SRCTRFRFSPLKEADIRVLVDKVIAEENVQINAEATDALVRLSKGDMRRALNVLQAC 257
>gi|384497070|gb|EIE87561.1| hypothetical protein RO3G_12272 [Rhizopus delemar RA 99-880]
Length = 259
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 165/251 (65%), Gaps = 6/251 (2%)
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
+ R+LELNASD+RGI VIR+KVK F++ T + G PCPP+KI+ILDEADSMT AQ+
Sbjct: 2 KSRVLELNASDERGINVIREKVKDFSRSTLTT-KVSGYPCPPYKIIILDEADSMTKDAQS 60
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRRTME + +TRFC+ICNYVS II+P+TSRC+KFRF L + RL+ IC QE V
Sbjct: 61 ALRRTMETYSTTTRFCIICNYVSRIIEPITSRCAKFRFTSLPVEDLEQRLEMICLQEGVQ 120
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIE---KLL 272
++TL++ SGGD+R+AIT LQS LK E + V E+ G IP+ I+ +L
Sbjct: 121 LAPNTMQTLIQCSGGDLRKAITFLQSGYNLK--ETVTPRMVHEMAGRIPDELIDDCRELW 178
Query: 273 KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 332
+EK ++ ++++ YSA L Q H+ +++ SLS QK+ I + ++ + L
Sbjct: 179 ASQDVNEIEKVVKRIMMDGYSAENLLSQLHEKMIADDSLSTLQKSNISQIMSTVDIDLIQ 238
Query: 333 GASEYIQILDL 343
G E++Q+L+L
Sbjct: 239 GGDEHLQVLNL 249
>gi|315425403|dbj|BAJ47068.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|315427367|dbj|BAJ48977.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
gi|343484218|dbj|BAJ49872.1| replication factor C small subunit [Candidatus Caldiarchaeum
subterraneum]
Length = 327
Score = 217 bits (552), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 124/326 (38%), Positives = 195/326 (59%), Gaps = 36/326 (11%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRP+ +DDV+ Q++VV LK + ++PH LF GPPGTGKT+T A L
Sbjct: 7 KNLPWVEKYRPRRLDDVVNQEQVVEALKNIVVSKNVPHMLFAGPPGTGKTATAHAFAQDL 66
Query: 91 FGDMYRE--RILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
FG Y E +E+NASD+RGI+ IR++VKT+A+ G F++++LDE+D
Sbjct: 67 FGPRYIEDGHFIEINASDERGIETIRERVKTYARSVPFG-------GIGFRLLLLDESDQ 119
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
+T AAQ A RRTME+ + + RF L NY + II+P+ SRC+ RFKPL+++ + T L+ I
Sbjct: 120 LTDAAQHAFRRTMEQFSTTCRFILAANYSNRIIEPIQSRCAVLRFKPLSKDMVETMLKKI 179
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
E++ D A++ + E S GDMR+AI LQS A + + I ++ + +V GV+ I
Sbjct: 180 AASENIKLDDSAIDAIYEFSLGDMRKAINILQSAASI--SKTIDSKTIYDVMGVVSRGEI 237
Query: 269 EKLLKVDSFQVLE-KYIED-------LILEAYSATQLFDQFHDIVMSASS------LSDK 314
++L++ VL+ K+IE L ++ Y T DIV S + +S++
Sbjct: 238 TRMLQL----VLDGKFIEARNLLRELLYVQGYQPT-------DIVSSIAREIPLLPVSEQ 286
Query: 315 QKALILEKLAECNARLQDGASEYIQI 340
K +++ + E + R+ +G + +Q+
Sbjct: 287 DKLRLMDLIGETDYRISEGGTPEVQL 312
>gi|402593971|gb|EJW87898.1| replication factor C 5 [Wuchereria bancrofti]
Length = 347
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 123/321 (38%), Positives = 189/321 (58%), Gaps = 15/321 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ +++ QE++ L K ++ LPH LFYGPPGTGKTST++AA L+
Sbjct: 15 MPWVEKYRPASLTELVSHQEIIDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLYT 74
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+LELNASDDRGI ++R+++ FAQ + +++ P K+VILDEAD+MT
Sbjct: 75 PKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVP--KLVILDEADAMTK 132
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRR +EK T + RFC+ICNY+S II + SRC++ RF PL+ +L RL +I
Sbjct: 133 DAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHIVRV 192
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEK 270
ES+ + L+ + GDMRR I LQS A + + +V G P P +EK
Sbjct: 193 ESLTVTEDGQKALLNLAEGDMRRVINILQSTA--MAFKTVDERNVYRCLGY-PLPTDVEK 249
Query: 271 LLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
++K+ DS + IE++ E A++ + + + HD + + L++ +A+
Sbjct: 250 IVKILLNDSMEDAYTRIEEIRNERAFALSDILNSMHDFIFRLVVPPELLSRLLI-CMADI 308
Query: 327 NARLQDGASEYIQILDLGSIV 347
L G S+ +Q LG+++
Sbjct: 309 EYHLSQGCSDRLQ---LGALI 326
>gi|448337480|ref|ZP_21526557.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
gi|445625386|gb|ELY78746.1| replication factor C small subunit [Natrinema pallidum DSM 3751]
Length = 330
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 186/329 (56%), Gaps = 19/329 (5%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +DD+ ++V LK + DLPH LF GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ + +++ D ++E LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAKSIAREVYDDDWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L+
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELS 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+ + +++ I E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 ADAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPNPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSD 313
+T +E ++ +D F +EDL+ E + + DQ H SA
Sbjct: 232 AITATARPEEVEAMVDHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDV 288
Query: 314 KQKALI--LEKLAECNARLQDGASEYIQI 340
++A + LE+L E + R+ +GA+E +Q+
Sbjct: 289 PERATVRLLERLGEVDYRITEGANERLQL 317
>gi|21227923|ref|NP_633845.1| replication factor C small subunit [Methanosarcina mazei Go1]
gi|42559488|sp|Q8PVY4.1|RFCS_METMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|20906344|gb|AAM31517.1| replication factor C subunit [Methanosarcina mazei Go1]
Length = 338
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 185/318 (58%), Gaps = 19/318 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP ++ V Q+E + L ++ +LPH LF GPPG GKT++ ++ ++FG D
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++RE ELNASD+RGI ++R+K+K FA+ G PFKI+ LDEAD++T A
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPMG-------GAPFKIIFLDEADALTSDA 127
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTMEK + + RF L CNY S II+P+ SRC+ +RF+ L++ + RL+YI +++
Sbjct: 128 QSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQD 187
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ E L+ + GDMR+A+ LQ+ A + + I E + T I+ L++
Sbjct: 188 LSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLIE 247
Query: 274 V---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASS-------LSDKQKALILEK 322
+F+V K + L+ E S + Q + +V + LS++ +++
Sbjct: 248 TALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDI 307
Query: 323 LAECNARLQDGASEYIQI 340
+ E + RL +GASE IQ+
Sbjct: 308 IGETDFRLTEGASEKIQL 325
>gi|170084297|ref|XP_001873372.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650924|gb|EDR15164.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 341
Score = 216 bits (551), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 134/345 (38%), Positives = 187/345 (54%), Gaps = 28/345 (8%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APS+++T +PWVEKYRP +DDV+ + + LK + PH + G
Sbjct: 10 APSAAETPYE---------LPWVEKYRPTVLDDVVGNSDTIERLKVIARDGNCPHIIISG 60
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PG GKT+++ HQL GD Y+E +LELNASDDRGI V+R+K+KTFAQ+ +
Sbjct: 61 LPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDDRGIDVVRNKIKTFAQKKVT------- 113
Query: 134 PCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PP KI+ILDEADSMT AQ ALRRTME + +TRFCL CN + II+P+ SRC+
Sbjct: 114 -LPPGRHKIIILDEADSMTPGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAIL 172
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + +L RL ICE E V + L L+ TS GDMR+AI LQS G G
Sbjct: 173 RYAKLRDQEILKRLLEICEMEKVEYNDDGLTALIFTSEGDMRQAINNLQSTY---SGFGF 229
Query: 252 VNEDVLEVTGVIPNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
V+ D + P+P I LK D +EK + L + YSA + +V
Sbjct: 230 VSGDNVFKVCDQPHPIIVQATIRACLKGDIDGAIEK-VNQLWEQGYSAVDIVVTIFRVVK 288
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
+ + K ++++ + R+ +G IQ+ L + + K N
Sbjct: 289 IFDEMPEYTKLEYIKEIGFTHMRILEGVGTLIQLAGLVARLCKMN 333
>gi|378727708|gb|EHY54167.1| replication factor C subunit 3/5 [Exophiala dermatitidis
NIH/UT8656]
Length = 408
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/218 (48%), Positives = 145/218 (66%), Gaps = 8/218 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV +++++ + + + LPH L YGPPGTGKTST++A Q++G
Sbjct: 46 LPWVEKYRPNTLDDVSGHKDILATINRFIEQNKLPHLLLYGPPGTGKTSTILALARQIYG 105
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPCP-----PFKIVILD 144
R+ +LELNASDDRGI V+R+++KTFA +Q S Q G FK++ILD
Sbjct: 106 PKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSASTQQGPSGAKFGLGAFKLIILD 165
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EAD+MT AAQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + +
Sbjct: 166 EADAMTSAAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKKEDIRRL 225
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ ++ +E V A+E+LVE S GDMRRA+ LQ+C
Sbjct: 226 VDHVIAEEKVNIAPDAVESLVELSKGDMRRALNVLQAC 263
>gi|154313201|ref|XP_001555927.1| hypothetical protein BC1G_05602 [Botryotinia fuckeliana B05.10]
Length = 390
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 150/237 (63%), Gaps = 5/237 (2%)
Query: 10 LGKDAPSS-SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH 68
G DA +S K S + +PWVEKYRP T++DV Q++++ + K + LPH
Sbjct: 22 FGSDATTSKGKRSAANLPVEAEDSLPWVEKYRPDTLEDVSGHQDILATINKFVDTNRLPH 81
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
LFYGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTFA T
Sbjct: 82 LLFYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQIKTFAS-TKQI 140
Query: 128 FNQDGKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
F P +K++ILDEAD+MT AQ ALRR MEK T +TRFC+I NY + L
Sbjct: 141 FASKSSSTSPGAYKLIILDEADAMTSTAQMALRRVMEKYTANTRFCVIANYTHKLSPALL 200
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
SRC++FRF PL E + + + +E+V + +A + LV S GDMRRA+ LQ+C
Sbjct: 201 SRCTRFRFSPLKEADIRVLVDKVIAEENVQINAEATDALVRLSKGDMRRALNVLQAC 257
>gi|325958394|ref|YP_004289860.1| replication factor C small subunit [Methanobacterium sp. AL-21]
gi|325329826|gb|ADZ08888.1| Replication factor C small subunit [Methanobacterium sp. AL-21]
Length = 347
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 183/315 (58%), Gaps = 19/315 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+D+V+ Q+ + LK+ + ++P+ +F GP G GKT+T IA ++ G+
Sbjct: 30 PWVEKYRPQTLDEVVGQEHTILRLKRYVKEGNMPNLMFTGPAGVGKTTTSIALAKEMLGE 89
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R+ LELNASD RGI +R+ +K+F + A G PF+I+ LDE D+MT A
Sbjct: 90 YWRQNFLELNASDARGIDTVRNDIKSFCRLKAVG--------SPFRIIFLDEVDNMTKDA 141
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF P+ + ++ RL+YI + E
Sbjct: 142 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFVPVKGHQIIKRLEYIAQAEG 201
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP----NPWIE 269
+ D A+E++V + GDMRRA+ LQ+ + GE + E V EV +
Sbjct: 202 LKIDIAAIESIVYFAEGDMRRAVNILQASS--SAGEEVTEESVDEVVSKAKPKDVKKIVN 259
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSA----TQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
K L D E + ++++ S TQ++ + + + SL++ ++E + E
Sbjct: 260 KALDGDFIGARELLRDVMVVQGTSGEDMVTQIYQEVSKMALDG-SLNEDIYINLVESIGE 318
Query: 326 CNARLQDGASEYIQI 340
+ R+++G++ IQ+
Sbjct: 319 TDYRIREGSNPRIQL 333
>gi|20089555|ref|NP_615630.1| replication factor C small subunit [Methanosarcina acetivorans C2A]
gi|42559497|sp|Q8TSX5.1|RFCS_METAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|19914469|gb|AAM04110.1| replication factor C, small subunit [Methanosarcina acetivorans
C2A]
Length = 338
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 183/318 (57%), Gaps = 19/318 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP ++ V Q E + LK ++ +LPH LF GPPG GKT++ ++ ++FG D
Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++RE ELNASD+RGI ++R+K+K FA+ G PFKI+ LDEAD++T A
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPIG-------GAPFKIIFLDEADALTADA 127
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + + RF L CNY S II+P+ SRC+ +RF+ L++ + RL+YI +
Sbjct: 128 QSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQG 187
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ E L+ + GDMR+A+ LQ+ A + + I E + T I+ L++
Sbjct: 188 LSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLIE 247
Query: 274 V---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASS-------LSDKQKALILEK 322
+F++ K + L+ E S + Q + +V + L+++ +++
Sbjct: 248 TALRGNFRIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVDV 307
Query: 323 LAECNARLQDGASEYIQI 340
+ E + RL +GASE IQ+
Sbjct: 308 IGETDFRLTEGASEKIQL 325
>gi|281344058|gb|EFB19642.1| hypothetical protein PANDA_008377 [Ailuropoda melanoleuca]
Length = 318
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 186/320 (58%), Gaps = 29/320 (9%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM- 94
VEKYRP+T++D+I Q+++S ++K +S LPH L YGPPGTGKTST++A QL+ D
Sbjct: 1 VEKYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKE 60
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ +LELNASDDRGI ++R + +FA T + F + FK+VILDEAD+MT AQ
Sbjct: 61 FGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEADAMTQDAQ 113
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+++ ++E V
Sbjct: 114 NALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVIKEEKV 173
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
++ LV + GDMRRA+ LQS G + E V TG +P LK
Sbjct: 174 DLSEDGMKALVTLASGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP-----LKS 223
Query: 275 DSFQVLEKYIEDLILEAY-SATQLFD----QFHDIVMSASSLSDK------QKALILEKL 323
D +L+ + AY + T+L HDI+ + + +L K+
Sbjct: 224 DIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTETHLFVHRVDFPSSVRVHLLTKM 283
Query: 324 AECNARLQDGASEYIQILDL 343
A+ RL G +E IQ+ L
Sbjct: 284 ADIEYRLSVGTNEKIQLSSL 303
>gi|15678269|ref|NP_275384.1| replication factor C small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
gi|42559322|sp|O26343.1|RFCS_METTH RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit;
AltName: Full=MthRFC small subunit
gi|2621290|gb|AAB84747.1| replication factor C, small subunit [Methanothermobacter
thermautotrophicus str. Delta H]
Length = 321
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 180/315 (57%), Gaps = 19/315 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q+ ++ LK+ + +P+ +F GP G GKT+ +A ++ G+
Sbjct: 7 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILGE 66
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R+ LELNASD RGI +R +K F + G PF+I+ LDE D+MT A
Sbjct: 67 YWRQNFLELNASDARGIDTVRTSIKNFCRLKPVG--------APFRIIFLDEVDNMTKDA 118
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF PL + ++ RL+YI E+E+
Sbjct: 119 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKEN 178
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ALET+V + GD+R+AI LQS A L GE I + +V + K++K
Sbjct: 179 LEYEAHALETIVYFAEGDLRKAINLLQSAASL--GEKITESSIYDVVSRARPKDVRKMIK 236
Query: 274 V----DSFQVLEKYIEDLILEAYSA----TQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
+ + E ++L+ S TQ++ + + M D+ LI + + E
Sbjct: 237 TILDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLI-DAIGE 295
Query: 326 CNARLQDGASEYIQI 340
+ R+++GA+ IQ+
Sbjct: 296 YDFRIREGANPRIQL 310
>gi|383620026|ref|ZP_09946432.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|448696276|ref|ZP_21697837.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
gi|445783964|gb|EMA34788.1| replication factor C small subunit [Halobiforma lacisalsi AJ5]
Length = 330
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 188/329 (57%), Gaps = 19/329 (5%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +D++ + +V LK+ + DLPH +F GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDEIKGHENIVPRLKRYVEQDDLPHLMFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQAIAREIYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ +++ I +E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 DDATEAQVREIAAEEGIEVTDDGVDALVFAADGDMRKAINGLQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPNPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSD 313
+T +E++++ +D F +EDL+ + + + DQ H SA
Sbjct: 232 AITSTARPEEVEEMVEHAIDGDFTAARAALEDLLTDRGLAGGDVIDQLH---RSAWQFDI 288
Query: 314 KQKALI--LEKLAECNARLQDGASEYIQI 340
++A + LE+L E + R+ GA+E +Q+
Sbjct: 289 PERATVRLLERLGEVDYRITTGANERLQL 317
>gi|71986063|ref|NP_498750.2| Protein F44B9.8 [Caenorhabditis elegans]
gi|55584161|sp|P34429.3|RFC5_CAEEL RecName: Full=Probable replication factor C subunit 5; AltName:
Full=Activator 1 subunit 5
gi|351021183|emb|CCD63451.1| Protein F44B9.8 [Caenorhabditis elegans]
Length = 368
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 122/318 (38%), Positives = 175/318 (55%), Gaps = 16/318 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +D+++ +++V L K + LPH LFYGPPGTGKT+T++AA Q++
Sbjct: 29 LPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYS 88
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQ----QTASGFNQDGKPCPPFKIVILDEAD 147
+LELNASD+RGI V+R+ + FAQ Q S + G PFK+VILDEAD
Sbjct: 89 PTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTG--TVPFKLVILDEAD 146
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T + RFC+ICNY++ I+ + SRC++FRF PL + ++ RL+Y
Sbjct: 147 AMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEY 206
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP- 266
I E E + + L+ S GDMR I LQS A + + V + G P P
Sbjct: 207 IVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAM--SFDTVSENTVYQCIGQ-PTPK 263
Query: 267 ----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
++ LL S + + L Y+ + HD V + + D+ + I+
Sbjct: 264 EMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVFTL-DIPDEAMSAIITG 322
Query: 323 LAECNARLQDGASEYIQI 340
L E L G S Q+
Sbjct: 323 LGEVEENLSTGCSNETQL 340
>gi|448515699|ref|XP_003867395.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis Co 90-125]
gi|380351734|emb|CCG21957.1| Rcf3 heteropentameric replication factor C subunit [Candida
orthopsilosis]
Length = 333
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 185/315 (58%), Gaps = 15/315 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + +V QQ++V+ +++ + LPH LFYGPPGTGKTST+IA +++G
Sbjct: 9 LPWVEKYRPENLTEVYGQQDIVNTIRRFVETGKLPHLLFYGPPGTGKTSTIIALAREIYG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y+ +LELNASDDRGI V+R+++K+FA T F P FK++ILDEAD+MT
Sbjct: 69 PHYKNMVLELNASDDRGIDVVRNQIKSFA-STRQIFTSSS--SPQFKLIILDEADAMTSV 125
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ +LRR +E+ TK+ RFC++ NY + L SRC++FRF P+ E + +R+ + +E
Sbjct: 126 AQNSLRRIIERYTKNCRFCILANYSHKLNPALISRCTRFRFHPIDEEAIRSRIDNVIIKE 185
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW----- 267
V AL L+ S GDMRR++ LQ+C G + ++ +++ P+P
Sbjct: 186 KVNITPDALNALLRLSQGDMRRSLNVLQACKAACGDDETIDIEMIYNCVGAPHPQDIEAV 245
Query: 268 IEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
++ +LK D ++ L KY D + + L F +I ++ + K + L+ L
Sbjct: 246 LDSILKQDWTTAYLTLNKYKID---KGLALVDLITGFIEI-LNDYKVKPKTRIEYLKGLC 301
Query: 325 ECNARLQDGASEYIQ 339
E + G ++ IQ
Sbjct: 302 EVEYGISKGGNDKIQ 316
>gi|190407255|gb|EDV10522.1| replication factor C subunit 4 [Saccharomyces cerevisiae RM11-1a]
Length = 323
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 123/335 (36%), Positives = 188/335 (56%), Gaps = 21/335 (6%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
KT + +PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++
Sbjct: 3 KTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILD 144
H+L G Y + +LELNASDDRGI V+R+++K FAQ+ PP KIVILD
Sbjct: 63 AHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH--------LPPGKHKIVILD 114
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L R
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L I + E V LE ++ T+ GDMR+AI LQS G G+VN D + P
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSP 231
Query: 265 NPWIEKLLKV-----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
+P I K + + DS Q+L DL + YS+ + + + + + + + +
Sbjct: 232 HPLIVKKMLLASNLEDSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEM 288
Query: 320 LEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
++++ + R+ +G Y+Q+ + + + K NK A
Sbjct: 289 IKEIGLTHMRILEGVGTYLQLASMLAKIHKLNKKA 323
>gi|307170254|gb|EFN62614.1| Replication factor C subunit 5 [Camponotus floridanus]
Length = 329
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 136/336 (40%), Positives = 189/336 (56%), Gaps = 22/336 (6%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
ST+ + R +PWVEKYRPK++D++I + ++ + K + LPH L YGPPGTGKTST
Sbjct: 3 STTAEQRAN-LPWVEKYRPKSLDELISHETIIRTINKFIDENQLPHLLLYGPPGTGKTST 61
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141
++A +L+ + +LELNASDDRGI ++R ++ +FA T + + FK++
Sbjct: 62 ILACARKLYTPTQFNSMVLELNASDDRGIGIVRGQILSFA-STGTMYKS------AFKLI 114
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEAD+MT AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PLA +
Sbjct: 115 ILDEADAMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQI 174
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVT 260
+ RL Y+ E E++ E L+ SGGDMR+ ++ LQS GIVN E+V
Sbjct: 175 IPRLNYVIEAENLKVTEDGKEALMTLSGGDMRKVLSVLQSTW---FAYGIVNQENVYNCV 231
Query: 261 GVIPNP----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 316
G P P I L +S+ K I++L L A Q D +I + +
Sbjct: 232 GH-PLPSDIHTIINWLLNESYDTCYKKIQELKLNKGLALQ--DILTEIHLCVIKIDFPNS 288
Query: 317 ALI--LEKLAECNARLQDGASEYIQILDLGSIVIKA 350
I L K+AE RL G + IQI L S K
Sbjct: 289 VFIDLLCKMAEIEKRLASGCRDIIQINSLISAFYKV 324
>gi|340505649|gb|EGR31962.1| replication factor c subunit, putative [Ichthyophthirius
multifiliis]
Length = 359
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/347 (37%), Positives = 198/347 (57%), Gaps = 35/347 (10%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD-LPHFLFYGPPGTGKTSTMIAACHQLF 91
+PWVEKYRP T+ D+I + +V + K ++ + LP+ LFYGPPGTGKTST++A QL+
Sbjct: 19 IPWVEKYRPDTLKDLISHEFIVMTITKFINEQNKLPNLLFYGPPGTGKTSTIVAIAKQLY 78
Query: 92 GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
G+ Y++ +LELNASDDRGI V+RD++KTFA + F+ GK K++ILDEAD MT+
Sbjct: 79 GNSYKQMVLELNASDDRGINVVRDQIKTFA--GTANFSAAGKGT---KLIILDEADQMTN 133
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK + + RFCLICNYVS II L SRC++F+FK + R++ IC
Sbjct: 134 QAQFALRRIIEKYSNNARFCLICNYVSKIIPALQSRCTRFKFKHIPIEDAQKRIEEICLI 193
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCL--------------QSCARLKG---GEGIVNE 254
E + D LE + + GDMRR + L Q +L+ + VNE
Sbjct: 194 EKIKYDQSGLEAIFKLCDGDMRRVVNMLQVKQFQYIYIYYIFQQSLQLQSNILNQVFVNE 253
Query: 255 D-VLEVTGVIPNPWIEKLLK-------VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
+ V + TG +E++L +++++ + KY +L+ S + + + +M
Sbjct: 254 EFVYKFTGNATPQDMEEILNILLTENLINAYETIRKY---QVLKGISLQVILKELNMKLM 310
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANKT 353
+ S + L+ +++AE R+ E +Q+L L + I+ T
Sbjct: 311 YSRYPSIALEFLV-KRIAELEYRMSISCEEKVQLLSLIGVFIEIRHT 356
>gi|354609736|ref|ZP_09027692.1| Replication factor C small subunit [Halobacterium sp. DL1]
gi|353194556|gb|EHB60058.1| Replication factor C small subunit [Halobacterium sp. DL1]
Length = 323
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 189/321 (58%), Gaps = 16/321 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+ ++DV+ ++ L+ + DLPH LF GP GTGKT++ ++ +++GD
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASAVSIAKEIYGDD 71
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++E LELNASD RGI V+RD++K FA+ + G++ ++++ LDEAD++T AQ
Sbjct: 72 WQENFLELNASDQRGIDVVRDRIKNFARASFGGYD--------YRVIFLDEADALTDDAQ 123
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF + ++ + L+ I +E +
Sbjct: 124 SALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFSQIDDDAVAAHLRDIAGREDL 183
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL-- 272
++ LV + GDMRRAI LQ+ + G+ + E V +T IE ++
Sbjct: 184 EYTEAGIDALVYAADGDMRRAINALQAAS--ATGDAVDEEVVYAITATARPEEIEGMVTE 241
Query: 273 KVDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F ++DL+ + + DQ H V S + ++ +L++L E + R+
Sbjct: 242 ALDGDFTAARSTLDDLLTNRGLAGGDIIDQIHRSVWS-FDVEEEAAVRLLDRLGEADFRI 300
Query: 331 QDGASEYIQILD-LGSIVIKA 350
+GA+E +Q+ L S+ ++A
Sbjct: 301 AEGANERVQLEALLASVALRA 321
>gi|448346878|ref|ZP_21535757.1| replication factor C small subunit [Natrinema altunense JCM 12890]
gi|445631215|gb|ELY84447.1| replication factor C small subunit [Natrinema altunense JCM 12890]
Length = 330
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 120/329 (36%), Positives = 186/329 (56%), Gaps = 19/329 (5%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +DD+ ++V LK + DLPH LF GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ + +++ D ++E LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAKSIAREVYDDDWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
+ + +++ I E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 VDAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPNPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSD 313
+T +E +++ +D F +EDL+ E + + DQ H SA
Sbjct: 232 AITATARPEEVEAMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDV 288
Query: 314 KQKALI--LEKLAECNARLQDGASEYIQI 340
++A + LE+L E + R+ +GA+E +Q+
Sbjct: 289 PERATVRLLERLGEVDYRITEGANERLQL 317
>gi|255558636|ref|XP_002520343.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223540562|gb|EEF42129.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 360
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/324 (39%), Positives = 184/324 (56%), Gaps = 20/324 (6%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K PWVEKYRP+++ DV +++V + + + LPH L YGPPGTGKTST++A +L
Sbjct: 35 KATPWVEKYRPQSLADVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 94
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G Y ILELNASDDRGI V+R +++ FA + F+ D K K+V+LDEAD+MT
Sbjct: 95 YGVQYHNMILELNASDDRGIDVVRQQIQDFA--STQSFSFDAKSA--VKLVLLDEADAMT 150
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR +EK TK+TRF LICN+V+ II L SRC++FRF PL + RL+++ E
Sbjct: 151 KDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDPIHVTDRLKHVIE 210
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
E + L +V S GDMR+A+ LQS + I E V TG NP +
Sbjct: 211 AEGLDVPEPGLAAVVRLSNGDMRKALNILQSTH--MASQQITEEAVHLCTG---NPLPKD 265
Query: 271 LLKVDSFQVLEKYIEDLI----LEAYSATQLFDQFHDIVMSASSL---SDKQKALILEKL 323
+ ++ + + E + E ++ L D ++ M + SD + LI +
Sbjct: 266 IQQISYWLLNESFAESFKRISEIKTKKGLALVDIVREVTMFVFKIKMPSDVRVQLI-NDM 324
Query: 324 AECNARLQDGASEYIQILDLGSIV 347
A+ RL G S+ +Q LGS+V
Sbjct: 325 ADIEYRLSFGCSDKLQ---LGSLV 345
>gi|448726685|ref|ZP_21709077.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
gi|445793731|gb|EMA44302.1| replication factor C small subunit [Halococcus morrhuae DSM 1307]
Length = 326
Score = 216 bits (550), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 179/317 (56%), Gaps = 16/317 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
TSG + W+EKYRP + +V Q ++ L+ ++ DLPH LF GP G GKT++
Sbjct: 4 TSGSGGRGEI-WIEKYRPSALAEVAGQDDITERLRSYVAQDDLPHLLFSGPAGVGKTTSA 62
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVIL 143
+A +++GD +R+ LELNASD+RGI V+RD++K FA+ + G++ ++++ L
Sbjct: 63 MAIAREIYGDDWRDNFLELNASDERGIDVVRDRIKNFARTSFGGYD--------YRVIFL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD++T AQ+ALRRTME+ +TRF L CNY + II P+ SRC+ FRF PL E +
Sbjct: 115 DEADALTSDAQSALRRTMEQFANNTRFILSCNYSNQIIDPIQSRCAVFRFGPLPETAVAE 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
++ I +E + ++ LV + GDMR+AI LQ+ A GE + E V +T
Sbjct: 175 YVEQIAGEEGIEITDDGVDALVYAADGDMRKAINGLQAAATT--GETVDEEAVYAITAAA 232
Query: 264 PNPWIEKLLK---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALI 319
IE +++ F ++DL+ + + DQ H S L D+ +
Sbjct: 233 RPEEIETMVQHAIGGDFTAARAKLDDLLTDWGLGGGDVIDQLHRSAWS-FELDDQATVRL 291
Query: 320 LEKLAECNARLQDGASE 336
LE++ E + R+ GA+E
Sbjct: 292 LERVGETDYRITQGANE 308
>gi|448381294|ref|ZP_21561497.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
gi|445663102|gb|ELZ15856.1| replication factor C small subunit [Haloterrigena thermotolerans
DSM 11522]
Length = 330
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/329 (36%), Positives = 186/329 (56%), Gaps = 19/329 (5%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ + D+ ++V L+ + DLPH LF GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPELLADIKGHTDIVPRLENYVEQDDLPHLLFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ A +++ D +RE LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQAIAREVYDDDWRENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
E+ + +++ I E + ++ LV + GDMR+AI LQ+ A + GE + E V
Sbjct: 174 EDAIEAQVREIAANEGIDVTDDGVDALVFAADGDMRKAINGLQAAAVM--GETVDEETVF 231
Query: 258 EVTGVIPNPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSD 313
+T +E +++ +D F +EDL+ E + + DQ H SA
Sbjct: 232 AITATARPEEVEAMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH---RSAWEFDV 288
Query: 314 KQKALI--LEKLAECNARLQDGASEYIQI 340
++A + LE+L E + R+ +GA+E +Q+
Sbjct: 289 PERATVRLLERLGEVDYRITEGANERLQL 317
>gi|159041490|ref|YP_001540742.1| replication factor C [Caldivirga maquilingensis IC-167]
gi|157920325|gb|ABW01752.1| Replication factor C [Caldivirga maquilingensis IC-167]
Length = 348
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 126/320 (39%), Positives = 182/320 (56%), Gaps = 17/320 (5%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K + WVE++RP + D+++Q+ V L + + DLPH LFYGPPG GKT+ +A +L
Sbjct: 5 KELLWVERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALAREL 64
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+GD +R +LELNASD+RGI VIR+KVK FA+ +G P P FK+VILDEAD+MT
Sbjct: 65 YGDSWRSSVLELNASDERGIDVIREKVKEFARTIPTG------PVP-FKLVILDEADNMT 117
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR ME +TRF L+ NY+S II+P+ SRC+ FRF PL + ++ RL+ I +
Sbjct: 118 SDAQQALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAK 177
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP----NP 266
+ V LE + E S GDMR+AI LQ+ + + E V V G + +
Sbjct: 178 ETGVEVTEDGLEAIWEVSQGDMRKAINTLQTTT--TTNKKVDREAVYRVVGRVEFKVVDE 235
Query: 267 WIEKLLKVDSFQVLEKYIEDLILE-AYSATQLFDQFHD--IVMSASSLSDKQKALILEKL 323
+IE L F+ K + +++ S +L D ++ L K + E +
Sbjct: 236 FIESALS-GRFEDSRKLLRNIMYTYGVSGVELLKYIEDELLINDKFKLPVDAKVEVSELV 294
Query: 324 AECNARLQDGASEYIQILDL 343
A+ + RL G+ E IQ+ L
Sbjct: 295 ADIDNRLVTGSDEEIQLTAL 314
>gi|448342324|ref|ZP_21531276.1| replication factor C small subunit [Natrinema gari JCM 14663]
gi|445626315|gb|ELY79664.1| replication factor C small subunit [Natrinema gari JCM 14663]
Length = 330
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/331 (36%), Positives = 189/331 (57%), Gaps = 23/331 (6%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+ ++ + ST GKT W+EKYRP+ +DD+ ++V LK + DLPH LF GP
Sbjct: 4 ADAEAAESTPGKTE----VWIEKYRPERLDDIKGHTDIVPRLKNYVEQDDLPHLLFAGPA 59
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
GTGKT+ + +++ D ++E LELNASD RGI V+RD++K FA+ + G++
Sbjct: 60 GTGKTTAAKSIAREVYDDDWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYSH----- 114
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF
Sbjct: 115 ---RIIFLDEADALTSDAQSALRRTMEQFSNNTRFILSCNYSSQIIDPIQSRCAVFRFTE 171
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L + + +++ I E + ++ LV + GDMR+AI LQ+ A + GE +
Sbjct: 172 LTADAIEAQVREIAATEDIAVTDDGVDALVYAADGDMRKAINALQAAAVM--GETVDEGT 229
Query: 256 VLEVTGVIPNPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSL 311
V +T +E +++ +D F +EDL+ E + + DQ H SA
Sbjct: 230 VFAITATARPEEVEAMVEHAIDGDFTAARAALEDLLTERGLAGGDVIDQLH---RSAWEF 286
Query: 312 SDKQKALI--LEKLAECNARLQDGASEYIQI 340
++A + LE+L E + R+ +GA+E +Q+
Sbjct: 287 DVPERATVRLLERLGEVDYRITEGANERLQL 317
>gi|198476564|ref|XP_002132399.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
gi|198137754|gb|EDY69801.1| GA25212 [Drosophila pseudoobscura pseudoobscura]
Length = 333
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 128/315 (40%), Positives = 181/315 (57%), Gaps = 28/315 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++DD+I E++ + + +S LPH LFYGPPGTGKTST++A QL+
Sbjct: 12 PWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLFYGPPGTGKTSTILACARQLYPP 71
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 72 ALFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CDTFKLIILDEADAMTND 124
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL+ + M+ RL+ I + E
Sbjct: 125 AQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQSE 184
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP-NPWIEKL 271
+ + L+ S GDMR+ + LQS A +VNED + + P IE +
Sbjct: 185 DIKITENGKKALLTLSKGDMRKVLNVLQSTAM---AFDVVNEDNVYMCAGYPLRQDIENI 241
Query: 272 LKV----DSFQV------LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
LK +F+V + K L LE + + H IVM L++
Sbjct: 242 LKALLSGHNFEVSFQNVDVAKSARGLALE-----DIITELHLIVMRLEFPISVMNELVV- 295
Query: 322 KLAECNARLQDGASE 336
KLA RL G ++
Sbjct: 296 KLAHIEERLTKGCTD 310
>gi|225459599|ref|XP_002285868.1| PREDICTED: replication factor C subunit 5 [Vitis vinifera]
gi|302141794|emb|CBI18997.3| unnamed protein product [Vitis vinifera]
Length = 360
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 131/334 (39%), Positives = 184/334 (55%), Gaps = 20/334 (5%)
Query: 21 SVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
SV G K PWVEKYRP+++ DV +++V + + S LPH L YGPPGTGKT
Sbjct: 25 SVVVGGPPDRKATPWVEKYRPQSLADVAAHRDIVDTIDRLTSENRLPHLLLYGPPGTGKT 84
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +L+G+ + ILELNASDDRGI V+R +++ FA + F K+
Sbjct: 85 STILAVARKLYGEQFHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKSS----VKL 140
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
V+LDEAD+MT AQ ALRR +EK TK+TRF LICN+V+ II L SRC++FRF PL
Sbjct: 141 VLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDAVH 200
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260
+ RL+++ E + L LV S GDMR+A+ LQS + I E V T
Sbjct: 201 VTERLKHVINAEKLDVSESGLAALVRLSSGDMRKALNILQSTH--MASQQITEEAVYLCT 258
Query: 261 GVIPNPWIEKLLKVDSFQVLEKYIE--DLILEA--YSATQLFDQFHDIVMSASSL---SD 313
G NP + + ++ + + E + D I E L D ++ M + SD
Sbjct: 259 G---NPLPKDIEQISYWLLNESFAASFDRISEVKMRKGLALVDVVREVTMFVFKIKMPSD 315
Query: 314 KQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
+ LI LA+ RL G ++ +Q LGS++
Sbjct: 316 VRVQLI-NDLADIEYRLSFGCNDKLQ---LGSLI 345
>gi|73669094|ref|YP_305109.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
gi|110287811|sp|Q46C63.1|RFCS_METBF RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|72396256|gb|AAZ70529.1| replication factor C small subunit [Methanosarcina barkeri str.
Fusaro]
Length = 334
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 184/320 (57%), Gaps = 23/320 (7%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP +D V Q+E + LK ++ +LPH LF GPPG GKT++ ++ ++FG D
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++RE ELNASD+RGI V+R K+K FA+ G FKI+ LDEAD++T A
Sbjct: 71 LWRENFTELNASDERGIDVVRTKIKNFAKTAPMG-------GAEFKIIFLDEADALTSDA 123
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + + RF L CNY S II+P+ SRC+ FRF+ L++ + RL+YI + +
Sbjct: 124 QSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQV 183
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WI 268
+ E LV S GDMR+A+ LQ+ A ++ + I + T NP I
Sbjct: 184 LSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTAT-ANPEDIRNLI 242
Query: 269 EKLLKVDSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASS-------LSDKQKALIL 320
E L+ +F+V K + L+ E S + Q + + + LS+K+ ++
Sbjct: 243 ETALR-GNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELV 301
Query: 321 EKLAECNARLQDGASEYIQI 340
+ + E + RL +GA+E IQ+
Sbjct: 302 DIIGEIDFRLTEGATEKIQL 321
>gi|224066809|ref|XP_002302226.1| predicted protein [Populus trichocarpa]
gi|222843952|gb|EEE81499.1| predicted protein [Populus trichocarpa]
Length = 363
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 130/340 (38%), Positives = 186/340 (54%), Gaps = 20/340 (5%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
P+ K V + K PWVEKYRP+++ DV ++++ + + S LPH L YGP
Sbjct: 22 PNKGKKVVVPATPPGGKATPWVEKYRPQSLADVAAHRDIIDTIDRLTSENRLPHLLLYGP 81
Query: 75 PGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
PGTGKTST++A +L+G Y ILELNASDDRGI V+R +++ FA + F
Sbjct: 82 PGTGKTSTILAVARKLYGAQYHNMILELNASDDRGIDVVRKQIQDFASTQSFSFGAKAS- 140
Query: 135 CPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
K+V+LDEAD+MT AQ ALRR +EK TK+TRF LICN+V+ II L SRC++FRF
Sbjct: 141 ---VKLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFA 197
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
PL + RL+++ E E + LE L S GDMR+A+ LQS + I E
Sbjct: 198 PLDPMHVGERLKHVIEAEGLDVPESGLEALKCLSNGDMRKALNILQSTH--MASQQITEE 255
Query: 255 DVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLI----LEAYSATQLFDQFHDIVMSASS 310
V TG NP + + ++ + + E + E ++ L D ++ M
Sbjct: 256 TVYLCTG---NPLPQDVQQITHWLLNESFAESYKRISEIKTRKGLALVDIVREVTMFVFK 312
Query: 311 L---SDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
+ SD + LI LA+ RL G ++ +Q LGS++
Sbjct: 313 IKMQSDIRVPLI-NDLADIEYRLSFGCNDKLQ---LGSLI 348
>gi|449464168|ref|XP_004149801.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
gi|449499057|ref|XP_004160708.1| PREDICTED: replication factor C subunit 5-like [Cucumis sativus]
Length = 363
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 117/268 (43%), Positives = 157/268 (58%), Gaps = 10/268 (3%)
Query: 19 KTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTG 78
K S + K +PWVEK+RPK++ DV +++V + K S LPH L YGPPGTG
Sbjct: 26 KNVASPAAAPEGKAIPWVEKFRPKSLADVAAHRDIVDTIDKLTSENRLPHLLLYGPPGTG 85
Query: 79 KTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPF 138
KTST++A +L+G Y ILELNASDDRGI V+R +++ FA + F
Sbjct: 86 KTSTILAVARKLYGTNYHNMILELNASDDRGIDVVRQQIQDFASTQSFSFGAKAS----V 141
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
K+V+LDEAD+MT AQ ALRR +EK TK+TRF LICN+V+ II L SRC++FRF PL
Sbjct: 142 KLVLLDEADAMTKDAQFALRRVIEKYTKNTRFALICNHVNKIIPALQSRCTRFRFAPLDN 201
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258
+ RL+Y+ E E + L LV GDMR+A+ LQS + I E V
Sbjct: 202 FHVTERLRYVIEAERLDVTEGGLAALVRLCTGDMRKALNILQSTH--MASQHITEEAVYL 259
Query: 259 VTGVIPNPWIEKLLKVDSFQVLEKYIED 286
TG NP + + ++ SF +L + D
Sbjct: 260 CTG---NPMPKDIEQI-SFWLLNEPFSD 283
>gi|268576128|ref|XP_002643044.1| Hypothetical protein CBG22959 [Caenorhabditis briggsae]
Length = 353
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 122/319 (38%), Positives = 175/319 (54%), Gaps = 18/319 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++++ ++VV L K + LPH LFYGPPGTGKT+T++AA +++
Sbjct: 11 LPWVEKYRPSKLNELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARKMYH 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQT-----ASGFNQDGKPCPPFKIVILDEA 146
+LELNASD+RGI V+R+ + FAQ AS ++D P FK+VILDEA
Sbjct: 71 PSKMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQAFASASDKDSVP---FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T + RFC+ICNY++ II + SRC++FRF PL ++ ++ RL
Sbjct: 128 DAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRFAPLDQSLIVPRLD 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
+I + E + E L+ S GDMR I LQS A E + V + G P P
Sbjct: 188 FIVKSEGLQMTPDGREALLRVSKGDMRTVINTLQSTAM--SFEVVSESTVYQCIGQ-PTP 244
Query: 267 W-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
+ LL + + K + L Y+ + HD+ S + D + I+
Sbjct: 245 AEMKKVVTLLLNQTAKTCMNKIKKSLFENGYALQDVITHLHDLAFSM-DIPDSAMSAIIV 303
Query: 322 KLAECNARLQDGASEYIQI 340
L E L G S Q+
Sbjct: 304 GLGEVEENLSTGCSNETQL 322
>gi|116205575|ref|XP_001228598.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88176799|gb|EAQ84267.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 389
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 191/363 (52%), Gaps = 36/363 (9%)
Query: 13 DAPSSSKTSVSTSGKTRNK------PV------PWVEKYRPKTIDDVIEQQEVVSVLKKC 60
D P+S S+ G ++ K PV PWVEKYRP ++ DV Q++++ + K
Sbjct: 11 DVPASKDIKFSSDGASKGKRSAANLPVEAEDSLPWVEKYRPVSLADVSGHQDILATINKF 70
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKT 119
+ LPH L YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KT
Sbjct: 71 VDSNRLPHLLLYGPPGTGKTSTILALARRIYGSENMRQMVLELNASDDRGIDVVREQIKT 130
Query: 120 FA---QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
FA Q G + FK++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY
Sbjct: 131 FASTKQIFTMGASASRTGIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANY 190
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236
+ L SRC++FRF PL E + + + E+E+V +A E LV S GDMRRA+
Sbjct: 191 SHKLSPALLSRCTRFRFSPLKEQDIRVLVDKVIEEETVKIIPEATEALVRLSKGDMRRAL 250
Query: 237 TCLQSCARLKGG----------------EGIVNEDVLEVTGVIPNPWIEKLLK--VDSFQ 278
LQ+C E I + + P I+K+L + +
Sbjct: 251 NVLQACHASSTPLQPRDAPKIPEKDIVRETITTQTIYNCVAAPPPDAIKKILGTLLSTSD 310
Query: 279 VLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLAECNARLQDGASE 336
V L+ L D + + L K + +I LEKLAE R+ G++E
Sbjct: 311 VTSCLSTINTLKVAQGLALADIITALSDELTKLEVKPQVMITWLEKLAEVEHRVSSGSNE 370
Query: 337 YIQ 339
IQ
Sbjct: 371 AIQ 373
>gi|114050971|ref|NP_001040148.1| replication factor C (activator 1) 5 [Bombyx mori]
gi|87248211|gb|ABD36158.1| replication factor C (activator 1) 5 [Bombyx mori]
Length = 334
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 127/331 (38%), Positives = 192/331 (58%), Gaps = 27/331 (8%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T G+T + +PWVEKYRPK +DD++ +++ + + + LPH LFYGPPGTGKTST+
Sbjct: 2 TVGET-GQNLPWVEKYRPKRLDDLVSHDDIIKTINQFMKENQLPHLLFYGPPGTGKTSTI 60
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+A Q++ + +LELNASDDRGI ++R ++ +FA T + F K P K++I
Sbjct: 61 LACAKQMYTPQQFSSMVLELNASDDRGIGIVRGQILSFAS-TRTIF----KAGP--KLII 113
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT+ AQ ALRR +EK T++ RFC+ICNY+ II L SRC++FRF PL ++ ++
Sbjct: 114 LDEADAMTNDAQNALRRIIEKYTENVRFCIICNYLGKIIPALQSRCTRFRFAPLKQDQIV 173
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE--VT 260
RLQ I E V ++ L+ SGGDMR+ + LQS + DV E V
Sbjct: 174 PRLQEIVTTEGVKMSEGGMKALLTLSGGDMRKVLNTLQST-------WLAYRDVTEDNVY 226
Query: 261 GVIPNPW-------IEKLLKVDSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLS 312
+ +P + LL + F K I+DL I + + + + + H I+ L
Sbjct: 227 TCVGHPLRADIDSILNWLLNENDFSACFKSIQDLKIAKGLALSDILAEVHTIIQRV-KLP 285
Query: 313 DKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+++ ARL G+SE +++ L
Sbjct: 286 PEVLVSLLIKMSDAEARLASGSSERVELAAL 316
>gi|406863129|gb|EKD16177.1| activator 1 subunit 3 [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 395
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 115/268 (42%), Positives = 161/268 (60%), Gaps = 26/268 (9%)
Query: 14 APSSSKTSVSTSGKTRNK--------PV------PWVEKYRPKTIDDVIEQQEVVSVLKK 59
AP++ T + +S T +K PV PWVEKYRP T++DV Q++++ + K
Sbjct: 13 APAAQDTVMFSSDNTNSKGKRSAANLPVEAEDSLPWVEKYRPDTLEDVSGHQDILATITK 72
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVK 118
+ LPH L YGPPGTGKTST++A Q++G R+ +LELNASDDRGI V+R+++K
Sbjct: 73 FVDTNRLPHLLLYGPPGTGKTSTILALARQIYGSKNMRQMVLELNASDDRGIDVVREQIK 132
Query: 119 TFAQQTASGFNQD----GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
TFA T F + P +K++ILDEAD+MT AQ ALRR MEK T +TRFC+I
Sbjct: 133 TFAS-TKQIFTMNKTSTSASMPTYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIA 191
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NY + L SRC++FRF PL E + + + +E+V + A + LV+ S GDMRR
Sbjct: 192 NYTHKLSPALLSRCTRFRFSPLKEADIRVLVDKVITEENVQINESATDALVKLSKGDMRR 251
Query: 235 AITCLQSCA------RLKGGEGIVNEDV 256
A+ LQ+C +KG I +D+
Sbjct: 252 ALNVLQACHASSTPLHIKGTPKIAEKDI 279
>gi|449550911|gb|EMD41875.1| hypothetical protein CERSUDRAFT_102269 [Ceriporiopsis subvermispora
B]
Length = 346
Score = 216 bits (549), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 132/344 (38%), Positives = 188/344 (54%), Gaps = 21/344 (6%)
Query: 17 SSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
S+K +G N P +PWVEKYRP+ +DDV+ E + LK + PH + G
Sbjct: 6 SAKGKAPANGNASNVPYELPWVEKYRPQKLDDVVGNTETIERLKIIARDGNCPHIIISGM 65
Query: 75 PGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R+K+KTFAQ+ +
Sbjct: 66 PGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKTFAQKKVT-------- 117
Query: 135 CPPF--KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
PP KIVILDEADSMT AQ ALRRTME +TRF L CN + II+P+ SRC+ R
Sbjct: 118 LPPGRQKIVILDEADSMTSGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAILR 177
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
+ L + +L RL IC+ E V + L L+ T+ GDMR+AI LQS G G V
Sbjct: 178 YTKLRDTEVLQRLLEICQAEQVKYNDDGLTALIFTAEGDMRQAINNLQST---HSGFGFV 234
Query: 253 NEDVLEVTGVIPNP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS 307
+ D + P+P I LK + +EK + +L + YSA + +V +
Sbjct: 235 SGDNVFKVCDQPHPIVVQAMIGACLKGNIDGAMEK-LNELWDQGYSAVDIVVTIFRVVKT 293
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
+ + K ++++ + R+ +G +Q+ L S + K N
Sbjct: 294 YDEIPEYTKLEYIKEIGFTHMRILEGVGTLVQLGGLMSRLCKMN 337
>gi|156841917|ref|XP_001644329.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
70294]
gi|156114969|gb|EDO16471.1| hypothetical protein Kpol_1066p38 [Vanderwaltozyma polyspora DSM
70294]
Length = 336
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 146/214 (68%), Gaps = 7/214 (3%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T + +PWVEKYRP ++D+V Q E+V+ ++K + LPH LFYGPPGTGKTST+IA
Sbjct: 7 TNRENLPWVEKYRPTSLDEVYGQNEIVNTVRKFVEEGKLPHLLFYGPPGTGKTSTIIALA 66
Query: 88 HQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
+++G Y +LELNASDDRGI V+R++VK FA T F++ FK++ILDEAD
Sbjct: 67 KEIYGKNYHNMVLELNASDDRGIDVVRNQVKDFA-STRQIFSKG------FKLIILDEAD 119
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT+AAQ +LRR +EK TK+TRFC++ NY + L SRC++FRF+P+ + R+
Sbjct: 120 AMTNAAQNSLRRIIEKYTKNTRFCILANYAYKLTPALLSRCTRFRFQPIGPAAIEQRMNN 179
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+ +E++ D A + L++ S GDMRR + LQ+
Sbjct: 180 VIIKENIKIDDAAKKALLKVSKGDMRRVLNVLQA 213
>gi|167999374|ref|XP_001752392.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696292|gb|EDQ82631.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 333
Score = 215 bits (548), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 118/294 (40%), Positives = 181/294 (61%), Gaps = 23/294 (7%)
Query: 20 TSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGK 79
T+V+ + ++ +PWVEKYRP + D++ Q+VV+ L+ G ++P+ +F GPPGTGK
Sbjct: 3 TTVAATSLAKDYDLPWVEKYRPHRVADIVGNQDVVARLQVIAQGGNMPNLIFSGPPGTGK 62
Query: 80 TSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP-- 137
T++++A H+L G ++E +LELNASDDRGI V+R+K+K FAQ+ + PP
Sbjct: 63 TTSILALAHELLGPNFKEAVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGR 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
K+V+LDEADSMT AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L+
Sbjct: 115 HKVVLLDEADSMTAGAQQALRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAIVRFSRLS 174
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ +L RL + E E V + LE +V T+ GDMR+A+ LQ A G + + ++V
Sbjct: 175 DSEILDRLLRVVEAEKVPYVPEGLEAVVFTADGDMRQALNNLQ--ATFSGFQFVNQDNVF 232
Query: 258 EVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 311
V P+P + + Q+++ I I +AY+ + Q +D+ SA+ +
Sbjct: 233 RVCDQ-PHPLLAQ-------QIIKHCIAGNIDDAYTGLK---QLYDMGYSATDI 275
>gi|332023241|gb|EGI63497.1| Replication factor C subunit 5 [Acromyrmex echinatior]
Length = 327
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 127/321 (39%), Positives = 184/321 (57%), Gaps = 21/321 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK++D++I + ++ + K + LPH L YGPPGTGKTST++A +L+
Sbjct: 10 LPWVEKYRPKSLDELISHETIIKTINKYIDENQLPHLLLYGPPGTGKTSTILACARKLYT 69
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI ++R ++ +FA T + + FK++ILDEAD+MT
Sbjct: 70 PAQFNSMVLELNASDDRGIGIVRGQILSFAS-TGTMYKS------AFKLIILDEADAMTI 122
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PLA ++ RL ++ E
Sbjct: 123 DAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQIIPRLNHVIEA 182
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW---- 267
E++ + L+ SGGDMR+ I+ LQS G VNE+ V + +P
Sbjct: 183 ENLKVTEDGKQALITLSGGDMRKVISVLQSTW---FAYGAVNEE--NVYNCVGHPLPRDI 237
Query: 268 --IEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQKALILEKLA 324
I L +S+ K I++L L A Q + + H V+ D+ +L K+A
Sbjct: 238 TSIVNWLLNESYDTCYKKIQELKLNKGLALQDILTEVHSYVIKI-DFPDQLFTDLLCKMA 296
Query: 325 ECNARLQDGASEYIQILDLGS 345
E RL G + IQ+ L S
Sbjct: 297 EIEKRLASGCRDNIQLNSLIS 317
>gi|448115886|ref|XP_004202928.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359383796|emb|CCE79712.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 215 bits (548), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 99/210 (47%), Positives = 144/210 (68%), Gaps = 7/210 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+V Q ++VS ++K + LPH LFYGPPGTGKTST+IA +++G
Sbjct: 10 LPWVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAKEIYG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT
Sbjct: 70 SNYRNMVLELNASDDRGIDVVRNQIKEFA-STMQIFSKG------FKLIILDEADAMTST 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ +LRR +EK TK+TRFC++ NY + L SRC++FRF P+++ + T + + +E
Sbjct: 123 AQNSLRRIIEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ A+E+L + GDMR+A+ LQ+C
Sbjct: 183 KLKISSDAIESLCTLARGDMRKALNVLQAC 212
>gi|406605842|emb|CCH42728.1| Replication factor C subunit 4 [Wickerhamomyces ciferrii]
Length = 324
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 181/314 (57%), Gaps = 16/314 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DV +E +S LK ++PH + G PG GKT+++ H+L G
Sbjct: 9 LPWVEKYRPSKLEDVTGNEETISRLKLISQDGNMPHLIISGLPGIGKTTSIHCLAHELLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y +LELNASDDRGI V+R+K+K FAQ+ S P KI+ILDEADSMT
Sbjct: 69 DAYSNAVLELNASDDRGIDVVRNKIKQFAQKKVS------LPQGRHKIIILDEADSMTPG 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L++ +L RL I + E
Sbjct: 123 AQQALRRTMEIYSNTTRFAFACNVSNKIIEPLQSRCAILRYTKLSDEEVLKRLLDIIKFE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEK- 270
V LE L+ T+ GDMR+AI LQS G G VN E+V ++ P+P I K
Sbjct: 183 KVEYSNDGLEALIFTAEGDMRQAINNLQSTV---AGFGFVNGENVFKIVDS-PHPLIIKK 238
Query: 271 -LLKVDSFQVLEK---YIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
+L+V + ++K Y+ L + YSA + +V + + + + I++++
Sbjct: 239 MILEVVQNKDIDKSLFYLNGLWEKGYSAIDIASTSFKVVKNLYEIDESDRLEIMKEIGIT 298
Query: 327 NARLQDGASEYIQI 340
+ R+ +G Y+Q+
Sbjct: 299 HMRVLEGVGSYLQL 312
>gi|328874863|gb|EGG23228.1| replication factor C subunit [Dictyostelium fasciculatum]
Length = 368
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 132/351 (37%), Positives = 195/351 (55%), Gaps = 57/351 (16%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK++ ++I ++++ + K + LPH LFYGPPGTGKTST+ A +L+G
Sbjct: 21 LPWVEKYRPKSLKELISHEDIIDTITKLIDKNSLPHLLFYGPPGTGKTSTIQAVARKLYG 80
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y +LELNASDDRGI V+R+++K+FA + FN + FK++ILDEADSMT+A
Sbjct: 81 DNYSRMVLELNASDDRGIDVVREQIKSFA-GSMGIFNTN-----QFKLIILDEADSMTNA 134
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E TK+TRFC+ICNYV +I L SRC++FRF L + + R++ I EQE
Sbjct: 135 AQTALRRVIETYTKTTRFCMICNYVGKLIPALQSRCTRFRFGRLGKPQSIKRIKEIVEQE 194
Query: 213 S---VMCD---------------------FK------ALETLVETSGGDMRRAITCLQSC 242
+M D F+ A+ ++ + GDMR+++ LQS
Sbjct: 195 KYDIIMTDKLPINIFQTHTDCPPIHSNVMFRMNISDEAITSIELLAEGDMRKSLNLLQSV 254
Query: 243 A-RLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAY--------- 292
+ G I + D+ GV P+ K ++ Q+L+ I + EAY
Sbjct: 255 SMSSDDGVQITDADIYRCAGV-PS-------KRETVQILQWCIGEDFDEAYKNLSNMKKE 306
Query: 293 SATQLFDQFHDI---VMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
L D D+ + A ++ ++ I ++LAE L GASE +Q+
Sbjct: 307 KGFSLVDIIKDVSVLIHKARNMDERAITSISKELAEIEYNLSFGASEKLQL 357
>gi|312069831|ref|XP_003137865.1| replication factor C subunit 3 [Loa loa]
gi|307766973|gb|EFO26207.1| replication factor C subunit 3 [Loa loa]
Length = 354
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 121/321 (37%), Positives = 189/321 (58%), Gaps = 15/321 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ +V+ E+ L K ++ LPH LFYGPPGTGKTST++AA ++
Sbjct: 15 MPWVEKYRPVSLTEVVSHGEITETLMKLINENRLPHLLFYGPPGTGKTSTILAAAKMMYA 74
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+LELNASDDRGI ++R+++ FAQ + +++ K P K+++LDEAD+MT
Sbjct: 75 PKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLSMDKNQKSMP--KLIVLDEADAMTK 132
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRR +EK T + RFC+ICNY+S II + SRC++ RF PL +L RL YI +
Sbjct: 133 DAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLPNEQILPRLHYIVQA 192
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV-IPNPWIEK 270
ES+ L+ + GDMRR I LQS A + + V + G +PN +EK
Sbjct: 193 ESLTITKDGQNALLNLAEGDMRRIINILQSTA--MAFKTVDEWSVYQCVGYPLPND-VEK 249
Query: 271 LLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
++++ DS + IE++ E A++ + + + HD + + + + +L +A+
Sbjct: 250 IVRILLNDSIEDAYTKIEEIRSERAFALSDILNSMHDFIFRL-VIPPELLSRLLVCMADI 308
Query: 327 NARLQDGASEYIQILDLGSIV 347
L G S+ +Q LG+++
Sbjct: 309 EYHLSQGCSDRLQ---LGALI 326
>gi|367007966|ref|XP_003688712.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
gi|357527022|emb|CCE66278.1| hypothetical protein TPHA_0P01200 [Tetrapisispora phaffii CBS 4417]
Length = 335
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 162/243 (66%), Gaps = 9/243 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+V Q ++V+ ++K ++ LPH LFYGPPGTGKTST+IA +++G
Sbjct: 11 LPWVEKYRPSSLDEVYGQPDIVNTVRKFVAEGKLPHLLFYGPPGTGKTSTIIALAKEIYG 70
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT+A
Sbjct: 71 KNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKLIILDEADAMTNA 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++ NY + L SRC++FRF+P+A + + R+ + QE
Sbjct: 124 AQNALRRIIEKYTKNTRFCILANYAYKLTPALLSRCTRFRFQPIAIDALERRMNNVVLQE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQ-SCARLKGGEG-IVNEDVLEVTGVIPNPWIEK 270
+ +A + L++ S GDMRR + LQ S + + +G I E + E G+ ++K
Sbjct: 184 HLNIGQEAKDALLKVSKGDMRRIMNVLQASKSSVDTADGEITREIIYECCGICRPEDVQK 243
Query: 271 LLK 273
+LK
Sbjct: 244 ILK 246
>gi|150403344|ref|YP_001330638.1| replication factor C small subunit [Methanococcus maripaludis C7]
gi|166225156|sp|A6VJ61.1|RFCS_METM7 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|150034374|gb|ABR66487.1| Replication factor C [Methanococcus maripaludis C7]
Length = 315
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 180/320 (56%), Gaps = 32/320 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+G+
Sbjct: 4 PWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKEN 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ ++ S GDMR+AI LQ+ A + V E+++ P +++ K
Sbjct: 177 LTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS---DTVTEEIVYKVASKARP--DEIKK 231
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALIL 320
+ + K++E S QL++ D MS +S+K+K ++
Sbjct: 232 MTQLALNGKFVE-------SREQLYNLMIDWGMSGEDILIQIFREVPNLDISEKEKVHLV 284
Query: 321 EKLAECNARLQDGASEYIQI 340
E + EC+ R+ +G++E IQ+
Sbjct: 285 EAIGECDFRIVEGSNERIQL 304
>gi|429863915|gb|ELA38322.1| replication factor c subunit 3 [Colletotrichum gloeosporioides Nara
gc5]
Length = 389
Score = 215 bits (547), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 111/245 (45%), Positives = 152/245 (62%), Gaps = 15/245 (6%)
Query: 13 DAPSSSKTSVSTSGK-----TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCL 61
DAP+S + S+ K N PV PWVEKYRP ++DV Q++++ + K +
Sbjct: 11 DAPASKDITFSSDAKQGKRSAANLPVEAEDSLPWVEKYRPVNLNDVSGHQDILATINKFV 70
Query: 62 SGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTF 120
LPH L YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTF
Sbjct: 71 DSNRLPHLLLYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGIDVVREQIKTF 130
Query: 121 A---QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
A Q G +K++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY
Sbjct: 131 ASTKQIFTLGPAAKAGGMASYKLIILDEADAMTNTAQMALRRIMEKYTVNTRFCIIANYS 190
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
+ L SRC++FRF PL E + + + E+E V +A E LV+ S GDMRRA+
Sbjct: 191 HKLSPALLSRCTRFRFSPLKERDIRVLVDKVIEEEHVKIMSEATEALVKLSKGDMRRALN 250
Query: 238 CLQSC 242
LQ+C
Sbjct: 251 VLQAC 255
>gi|323307063|gb|EGA60346.1| Rfc4p [Saccharomyces cerevisiae FostersO]
Length = 382
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 126/347 (36%), Positives = 192/347 (55%), Gaps = 22/347 (6%)
Query: 15 PSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGP 74
P K S+ S KT + +PWVEKYRP+ + D++ +E + L++ ++PH + G
Sbjct: 51 PEDIKKSLIMS-KTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGM 109
Query: 75 PGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134
PG GKT+++ H+L G Y + +LELNASDDRGI V+R+++K FAQ+
Sbjct: 110 PGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIXVVRNQIKHFAQKKLH-------- 161
Query: 135 CPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
PP KIVILDEADSMT AQ ALRRTME + STRF CN + II+PL SRC+ R
Sbjct: 162 LPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILR 221
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
+ L++ +L RL I + E V LE ++ T+ GDMR+AI LQS G G+V
Sbjct: 222 YSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLV 278
Query: 253 NEDVLEVTGVIPNPWIEKLLKV-----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS 307
N D + P+P I K + + DS Q+L DL + YS+ + + +
Sbjct: 279 NADNVFKIVDSPHPLIVKKMLLASNLEDSIQILR---TDLWKKGYSSIDIVTTSFRVTKN 335
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
+ + + + +++++ + R+ +G Y+Q+ + + + K N A
Sbjct: 336 LAQVKESVRLEMMKEIGLTHMRILEGVGTYLQLASMLAKIHKLNNKA 382
>gi|195146716|ref|XP_002014330.1| GL19009 [Drosophila persimilis]
gi|194106283|gb|EDW28326.1| GL19009 [Drosophila persimilis]
Length = 333
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 181/315 (57%), Gaps = 28/315 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP ++DD+I E++ + + +S LPH L+YGPPGTGKTST++A QL+
Sbjct: 12 PWVEKYRPYSLDDLISHDEIILTINRFISQKQLPHLLYYGPPGTGKTSTILACARQLYPP 71
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+++ +LELNASDDRGI ++R ++ FA T + F C FK++ILDEAD+MT+
Sbjct: 72 ALFKSMVLELNASDDRGIGIVRGQILNFAS-TRTIF------CDTFKLIILDEADAMTND 124
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL+ + M+ RL+ I + E
Sbjct: 125 AQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDKMIPRLEQIVQSE 184
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP-NPWIEKL 271
+ + L+ S GDMR+ + LQS A +VNED + + P IE +
Sbjct: 185 DIKITENGKKALLTLSKGDMRKVLNVLQSTAM---AFDVVNEDNVYMCAGYPLRQDIENI 241
Query: 272 LKV----DSFQV------LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
LK +F+V + K L LE + + H IVM L++
Sbjct: 242 LKALLSGHNFEVSFQNVDVAKSARGLALE-----DIITELHLIVMRLEFPISVMNELVV- 295
Query: 322 KLAECNARLQDGASE 336
KLA RL G ++
Sbjct: 296 KLAHIEERLTKGCTD 310
>gi|371944797|gb|AEX62619.1| putative replication factor C small subunit [Moumouvirus Monve]
Length = 369
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 117/344 (34%), Positives = 184/344 (53%), Gaps = 34/344 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPW+EKYRP+ + D+ + + ++ + K S ++ HFLFYGPPGTGKTS ++A ++F
Sbjct: 8 VPWIEKYRPRRLQDIAQSENLIKLFKNSTSKGEMTHFLFYGPPGTGKTSAILAMGREIFK 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQ-TASGFNQDGKPCPPFKIVILDEADSMTH 151
+ + R++E NASDDRGI +R+K+ A++ S N DG P +KI+ILDEADSMT
Sbjct: 68 EHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSIINPDGTTIPSYKIIILDEADSMTD 127
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALR +E+ + +TRFC ICNY++ I + SRCS FK L + M+ +L I +
Sbjct: 128 EAQDALRVIIEQYSTTTRFCFICNYITKITDAIKSRCSAIYFKKLDDECMVNKLNEISIK 187
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG--------------------- 250
ES+ LET++E S GDMR+AI LQ+ L G +
Sbjct: 188 ESMKLSKDILETIIEVSNGDMRKAIMLLQNLKYLYGFKNRTKKNFEDVSTSELKTLSFKI 247
Query: 251 --------IVNEDVLEVTGVI----PNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLF 298
I E++ E+ I I + + S L + +I Y +
Sbjct: 248 LTNNNDNDITPENIYELAACITLTRAQEIINESVSCKSVIELSDLTKKIISLGYPIDTIL 307
Query: 299 DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
Q + ++ ++L+ QK+ I+ + ++++ +EYIQ+L+
Sbjct: 308 MQLNKGILKTNTLNTIQKSKIIINSGDILLKIKECGNEYIQLLN 351
>gi|296421944|ref|XP_002840523.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636741|emb|CAZ84714.1| unnamed protein product [Tuber melanosporum]
Length = 387
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 146/214 (68%), Gaps = 5/214 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++DV +++++ + K + LPH LFYGPPGTGKTST++A ++G
Sbjct: 43 LPWVEKYRPDTLNDVSGHEDILTTINKFVQTNRLPHLLFYGPPGTGKTSTILALARHIYG 102
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
R+++LELNASDDRGI+V+R+++KTFA Q + DG+ FK++ILDEAD+
Sbjct: 103 AHNIRQQVLELNASDDRGIEVVREQIKTFASTKQIFGASTKTDGE-LGSFKLIILDEADA 161
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + R+ ++
Sbjct: 162 MTSTAQNALRRIMEKYTANTRFCIIANYTHKLNAALLSRCTRFRFSPLPIDALRRRVDHV 221
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E V A++ L++ S GDMRR++ LQ+C
Sbjct: 222 IDAEKVKITPSAVDALLQLSRGDMRRSLNVLQAC 255
>gi|323303129|gb|EGA56931.1| Rfc4p [Saccharomyces cerevisiae FostersB]
Length = 323
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 187/335 (55%), Gaps = 21/335 (6%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
KT + +PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++
Sbjct: 3 KTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILD 144
H+L G Y + +LELNASDDRGI V+R+++K FAQ+ PP KIVILD
Sbjct: 63 AHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH--------LPPGKHKIVILD 114
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L R
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L I + E V LE ++ T+ GDMR+AI LQS G G+VN D + P
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSP 231
Query: 265 NPWIEKLLKV-----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
+P I K + + DS Q+L DL + YS+ + + + + + + + +
Sbjct: 232 HPLIVKKMLLASNLEDSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEM 288
Query: 320 LEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
++++ + R+ +G Y+Q+ + + + K N A
Sbjct: 289 MKEIGLTHMRILEGVGTYLQLASMLAKIHKLNNKA 323
>gi|159904872|ref|YP_001548534.1| replication factor C small subunit [Methanococcus maripaludis C6]
gi|226739142|sp|A9A6K6.1|RFCS_METM6 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|159886365|gb|ABX01302.1| Replication factor C [Methanococcus maripaludis C6]
Length = 315
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 180/320 (56%), Gaps = 32/320 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+GD
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKET 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ ++ S GDMR+AI LQ+ A + V E+++ P +++ K
Sbjct: 177 LTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS---DTVTEEIVYKVASKARP--DEIKK 231
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALIL 320
+ + K++E + QL++ D MS +S+K+K ++
Sbjct: 232 MTQLALNGKFVE-------AREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLV 284
Query: 321 EKLAECNARLQDGASEYIQI 340
E + EC+ R+ +G++E IQ+
Sbjct: 285 EAIGECDFRIVEGSNERIQL 304
>gi|6324478|ref|NP_014547.1| replication factor C subunit 4 [Saccharomyces cerevisiae S288c]
gi|730503|sp|P40339.1|RFC4_YEAST RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4; AltName: Full=Activator 1 37 kDa subunit
gi|499704|gb|AAA34970.1| 37 kDa subunit [Saccharomyces cerevisiae]
gi|600464|emb|CAA58185.1| orf 00923 [Saccharomyces cerevisiae]
gi|841468|gb|AAC49063.1| Rfc4p [Saccharomyces cerevisiae]
gi|1419942|emb|CAA99106.1| RFC4 [Saccharomyces cerevisiae]
gi|151945540|gb|EDN63781.1| replication factor C subunit 4 [Saccharomyces cerevisiae YJM789]
gi|207341418|gb|EDZ69479.1| YOL094Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256271406|gb|EEU06467.1| Rfc4p [Saccharomyces cerevisiae JAY291]
gi|259149392|emb|CAY86196.1| Rfc4p [Saccharomyces cerevisiae EC1118]
gi|285814797|tpg|DAA10690.1| TPA: replication factor C subunit 4 [Saccharomyces cerevisiae
S288c]
gi|323335629|gb|EGA76912.1| Rfc4p [Saccharomyces cerevisiae Vin13]
gi|323346696|gb|EGA80980.1| Rfc4p [Saccharomyces cerevisiae Lalvin QA23]
gi|349581076|dbj|GAA26234.1| K7_Rfc4p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763163|gb|EHN04693.1| Rfc4p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296734|gb|EIW07836.1| Rfc4p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 323
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 187/335 (55%), Gaps = 21/335 (6%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
KT + +PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++
Sbjct: 3 KTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILD 144
H+L G Y + +LELNASDDRGI V+R+++K FAQ+ PP KIVILD
Sbjct: 63 AHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH--------LPPGKHKIVILD 114
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L R
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L I + E V LE ++ T+ GDMR+AI LQS G G+VN D + P
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSP 231
Query: 265 NPWIEKLLKV-----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
+P I K + + DS Q+L DL + YS+ + + + + + + + +
Sbjct: 232 HPLIVKKMLLASNLEDSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEM 288
Query: 320 LEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
++++ + R+ +G Y+Q+ + + + K N A
Sbjct: 289 IKEIGLTHMRILEGVGTYLQLASMLAKIHKLNNKA 323
>gi|395334442|gb|EJF66818.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 344
Score = 214 bits (546), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 127/345 (36%), Positives = 189/345 (54%), Gaps = 17/345 (4%)
Query: 14 APSSSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
+ S++K +G P +PWVEKYRP+ +DDV+ + + LK + PH +
Sbjct: 2 SSSAAKGKAPANGAASTLPYELPWVEKYRPQVLDDVVGNTDTIERLKVIARDGNCPHIII 61
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R+K+K FAQ+ +
Sbjct: 62 SGMPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKAFAQKKVT----- 116
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
P KIVILDEADSMT AQ ALRRTME +TRF L CN + II+P+ SRC+
Sbjct: 117 -LPSGRHKIVILDEADSMTAGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCAIL 175
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + +L RL ICE E V + + LE L+ T+ GDMR+AI LQS G G
Sbjct: 176 RYSKLRDTEVLKRLLEICEMEKVQYNDEGLEALIFTAEGDMRQAINNLQSTW---SGFGF 232
Query: 252 VNEDVLEVTGVIPNP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
V+ D + P+P I LK D +++ + +L + YSA + +V
Sbjct: 233 VSGDNVFKVCDQPHPITVQAMIRSCLKGDIDAAMDR-LNELWDQGYSAVDIVVTIFRVVK 291
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
+ + + K ++++ + R+ +G +Q+ L + + + N
Sbjct: 292 TFDEIPEYTKLEFIKEIGWTHMRILEGVGTLVQLGGLMARLCRMN 336
>gi|393218168|gb|EJD03656.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 338
Score = 214 bits (545), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 127/326 (38%), Positives = 181/326 (55%), Gaps = 19/326 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T+DDV+ E + LK + PH + G PG GKT+++ HQ+ G
Sbjct: 17 LPWVEKYRPQTLDDVVGNSETIERLKVIARDGNCPHIIISGLPGIGKTTSIHCLAHQMLG 76
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
+ Y++ +LELNASD+RGI V+R+K+K FAQ+ + PP KIVILDEADSMT
Sbjct: 77 EAYKDGVLELNASDERGIDVVRNKIKAFAQKKVT--------LPPGRHKIVILDEADSMT 128
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF L CN + II+P+ SRC+ R+ L + +L RL ICE
Sbjct: 129 SGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYAKLRDQEILKRLLEICE 188
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP---- 266
E V + L L+ TS GDMR+AI LQS G G V+ D + P+P
Sbjct: 189 MEQVQYNDDGLTALIFTSEGDMRQAINNLQST---HSGFGFVSGDNVFKVCDQPHPILVQ 245
Query: 267 -WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
I +K D +EK E L + YSA + +V + L + K ++++
Sbjct: 246 AMIRACMKGDINTTMEKLTE-LWDQGYSAVDIVVTIFRVVKTFDELPEYTKLEYIKEIGF 304
Query: 326 CNARLQDGASEYIQILDLGSIVIKAN 351
+ R+ +G +Q+ L + + K N
Sbjct: 305 THMRILEGVGTLVQLGGLAARLCKMN 330
>gi|302501939|ref|XP_003012961.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
gi|291176522|gb|EFE32321.1| hypothetical protein ARB_00844 [Arthroderma benhamiae CBS 112371]
Length = 417
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 192/385 (49%), Gaps = 60/385 (15%)
Query: 13 DAPSSSKTSVSTSGKTRNK--------PV------PWVEKYRPKTIDDVIEQQEVVSVLK 58
DAP + T+ T+ T K PV PWVEKYRP T+DDV Q++++ +
Sbjct: 11 DAPPARDTAAFTADPTDVKGKRIVADLPVEAGDNLPWVEKYRPDTLDDVSGHQDIIATIN 70
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKV 117
+ + LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++
Sbjct: 71 RFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQI 130
Query: 118 KTFA----------------------QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
KTFA +Q S G FK++ILDEAD+MT AAQ
Sbjct: 131 KTFASTSLVYKGRSEAESLTAIIVGTKQIFSTAPSSGSGLGAFKLIILDEADAMTSAAQM 190
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + + E+E V
Sbjct: 191 ALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIEKEEVQ 250
Query: 216 CDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVI-------- 263
A+++LV+ S GDMRRA+ LQ+C L G NE E +
Sbjct: 251 IQPDAIDSLVKLSKGDMRRALNVLQACHASSMPLPSKNGDANEQQQERETITEETIYTCI 310
Query: 264 --PNPW-----IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQK 316
P+P +E LL ++ L+A L D + SL +
Sbjct: 311 AAPHPADIKIILETLLSTSDVTSCLNTVQ--TLKANKGLALADIISALSTELQSLEVPAQ 368
Query: 317 ALI--LEKLAECNARLQDGASEYIQ 339
+ +E LA+ RL G SE IQ
Sbjct: 369 VRVSWIEGLADVEWRLSGGGSEVIQ 393
>gi|291333464|gb|ADD93165.1| putative ATPase family associated with various cellular activities
AAA [uncultured archaeon MedDCM-OCT-S05-C724]
Length = 321
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/311 (38%), Positives = 177/311 (56%), Gaps = 16/311 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP + +V+ Q+ V + LK + + +PH LF GP G GKT++ +A ++FG++
Sbjct: 5 WIEKYRPNNLSEVVGQEAVTTRLKNYVKESSMPHLLFAGPAGIGKTTSALALAREMFGEL 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ + ELNASD+RGI V+R K+K FA+ G + G FKI+ LDEAD++T AAQ
Sbjct: 65 WQHNLHELNASDERGIDVVRGKIKEFARTAPLG--EKG-----FKIIFLDEADALTGAAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTMEK +++ RF + CNY S II P+ SRC+ FRF+P+ + L+++ +E+V
Sbjct: 118 AALRRTMEKYSRTCRFVMSCNYSSKIIDPIQSRCAVFRFRPIKAEDLEKYLKFVASKENV 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WIE 269
+A E+L + GD+RRAI LQ A K V DV+ P +E
Sbjct: 178 KVTKEAFESLTYLAQGDLRRAINGLQMAAAAKTE---VTPDVVYQAVAAARPEEVKDALE 234
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
L + EK I + + Q H V + D K L++EK+AE + R
Sbjct: 235 SALAGNFSTAREKLDTLQITYGLAGEDVLRQMHRTVRDL-EIPDNIKVLMIEKMAEADFR 293
Query: 330 LQDGASEYIQI 340
L +GA+ IQI
Sbjct: 294 LSEGANSRIQI 304
>gi|300123151|emb|CBK24424.2| unnamed protein product [Blastocystis hominis]
Length = 314
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 187/320 (58%), Gaps = 26/320 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PW+EK+RP+ ++D++ +E + +K +LPH L GPPGTGKT++M+ H + GD
Sbjct: 4 PWIEKHRPQCLEDIVGNEETIKRMKVITETGNLPHILLAGPPGTGKTTSMLCLAHAMLGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
Y+ ++ELNASDDRGI V+R+K+K FAQ S P K+V+LDEADSMT AA
Sbjct: 64 AYKTAVIELNASDDRGIDVVREKIKLFAQSKVS------LPEGSHKLVLLDEADSMTPAA 117
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME + +TRF L+CN S II+P+ SRC+ RF L + +L RL +ICE+E
Sbjct: 118 QQALRRIMELYSSTTRFALVCNISSKIIEPIQSRCAILRFNRLKDTEILDRLLHICEEEK 177
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ L L+ + GD+R A+ LQ A G + E+V++V P P + K
Sbjct: 178 ITYTNDGLSALLFCADGDLRVAVNSLQ--ATFYGFNVVNEENVIKVCDQ-PPPVVAK--- 231
Query: 274 VDSFQVLEKYI-EDLILEAYSATQLFDQFH---DIVMSA------SSLSDKQKALILEKL 323
Q+++ + +D++ TQL++ + DIV + + L++K K L+++
Sbjct: 232 ----QIVQCCVSKDMVGARSGMTQLWNLGYSSSDIVGTIFKVTKDADLTEKLKLEFLKEI 287
Query: 324 AECNARLQDGASEYIQILDL 343
C R+ +GA+ +Q+L L
Sbjct: 288 GICQLRIAEGATTLLQLLGL 307
>gi|389751171|gb|EIM92244.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 343
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 129/336 (38%), Positives = 187/336 (55%), Gaps = 19/336 (5%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
+T+G +PWVEKYRP +DDV+ + + LK ++PH + G PG GKT++
Sbjct: 12 ATNGSDIPYELPWVEKYRPNILDDVVGNSDTIDRLKVIARDGNVPHLIISGMPGIGKTTS 71
Query: 83 MIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKI 140
+ HQL GD Y+E +LELNASD+RGI V+R+K+K FAQ+ + PP KI
Sbjct: 72 IHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKAFAQKKVT--------LPPGRHKI 123
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
VILDEADSMT AQ ALRRTME + +TRFCL CN + II+P+ SRC+ R+ L +
Sbjct: 124 VILDEADSMTAGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDAE 183
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260
+L RL IC+ E V + L L+ TS GDMR+AI LQS G G V+ D +
Sbjct: 184 ILKRLLEICDIEKVEYNDDGLTALIFTSEGDMRQAINNLQSTW---SGFGFVSSDNVFKV 240
Query: 261 GVIPNPWIEKL-----LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 315
P+P I + +K + +EK + +L + YSA + +V + L +
Sbjct: 241 CDQPHPIIVQTIIRACMKSNVDLAMEK-LSELWGQGYSAVDIIVTIFRVVKTFDELPEYT 299
Query: 316 KALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
K ++++ + R+ +G IQ+ L + + K N
Sbjct: 300 KLEYIKEIGFTHMRILEGVGTLIQLAGLIARLCKLN 335
>gi|170589810|ref|XP_001899666.1| Putative activator 1 36 kDa subunit [Brugia malayi]
gi|158592792|gb|EDP31388.1| Putative activator 1 36 kDa subunit, putative [Brugia malayi]
Length = 347
Score = 214 bits (545), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 120/321 (37%), Positives = 189/321 (58%), Gaps = 15/321 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF- 91
+PWVEKYRP ++ +++ QE+ L K ++ LPH LFYGPPGTGKTST++AA L+
Sbjct: 15 MPWVEKYRPASLTELVSHQEITDTLMKLINENRLPHLLFYGPPGTGKTSTILAAARMLYT 74
Query: 92 GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+LELNASDDRGI ++R+++ FAQ + +++ P K++ILDEAD+MT
Sbjct: 75 SKQLSSMVLELNASDDRGIGIVREQIINFAQTSTLNVDKNQSSVP--KLIILDEADAMTK 132
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ+ALRR +EK T + RFC+ICNY+S II + SRC++ RF PL+ +L RL +I +
Sbjct: 133 DAQSALRRVIEKFTDNVRFCIICNYLSKIIPAIQSRCTRLRFAPLSNEQILPRLHHIVQV 192
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEK 270
E++ + L+ + GDMRR I LQS A + + +V G P P +EK
Sbjct: 193 ETLTVTEDGQKALLNLAEGDMRRVINILQSTA--MAFKTVDEPNVYRCVGY-PLPTDVEK 249
Query: 271 LLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
++K+ DS + IE++ E A++ + + + H+ + + L++ +A+
Sbjct: 250 IVKILLNDSIEDAYTKIEEIRTERAFALSDILNSMHEFIFRLVVPPELLSRLLI-CMADI 308
Query: 327 NARLQDGASEYIQILDLGSIV 347
L G S+ +Q LG+++
Sbjct: 309 EYHLSQGCSDRLQ---LGALI 326
>gi|242218752|ref|XP_002475163.1| predicted protein [Postia placenta Mad-698-R]
gi|220725657|gb|EED79635.1| predicted protein [Postia placenta Mad-698-R]
Length = 332
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 130/336 (38%), Positives = 184/336 (54%), Gaps = 24/336 (7%)
Query: 14 APSSSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
A SS+K +G T P +PWVEKYRP+ +DD++ E + LK + PH +
Sbjct: 2 ASSSAKGKAPANGDTSTVPYELPWVEKYRPQVLDDIVGNAETIDRLKVIAKDGNCPHIII 61
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R+K+K FAQ+ +
Sbjct: 62 SGMPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKAFAQKKVT----- 116
Query: 132 GKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
PP KIVILDEADSMT AQ ALRRTME +TRF L CN + II+P+ SRC+
Sbjct: 117 ---LPPGRHKIVILDEADSMTPGAQQALRRTMEIYANTTRFALACNMSNKIIEPIQSRCA 173
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
R+ L + +L RL ICE E V + L L+ TS GDMR+AI LQS G
Sbjct: 174 ILRYAKLRDTEILKRLLEICEMEKVQYNDDGLTALIFTSEGDMRQAINNLQST---HSGF 230
Query: 250 GIVNEDVLEVTGVIPNP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
G ++ D + P+P I +K D +EK + +L + YSA + +
Sbjct: 231 GFISGDNVFKVCDQPHPIIVQSIIRACIKSDIDGAMEK-LNELWDQGYSAVDIVVTVFRV 289
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
V ++ + K ++++ + R+ +G IQ+
Sbjct: 290 V---KTIPEYTKLEYIKEIGWTHMRILEGVGTLIQL 322
>gi|167045379|gb|ABZ10035.1| putative ATPase family associated with various cellular activities
(AAA) [uncultured marine microorganism HF4000_APKG10F13]
Length = 323
Score = 214 bits (545), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 121/310 (39%), Positives = 179/310 (57%), Gaps = 14/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP T+ +V+ Q V + L + +PH LF GPPGTGKT+ +A ++FG+
Sbjct: 5 WVEKYRPATLAEVVGQSVVTTRLASYVREKSMPHLLFAGPPGTGKTTCSLALAREMFGEH 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ + ELNASD+RGI V+R K+K FA+ G FKI+ LDEAD++T AAQ
Sbjct: 65 WQHNLHELNASDERGIDVVRGKIKEFARTAPIGGG-------GFKIIFLDEADALTSAAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTMEK +++ RF L CNY S II+P+ SRC+ FRF+PL + L++I +E +
Sbjct: 118 AALRRTMEKYSRTCRFVLSCNYSSKIIEPIQSRCAVFRFRPLQGEDVQRYLKFIAGREKL 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
+ A E L + GD+RRAI LQ A + I +E V + + ++L++
Sbjct: 178 KVNDDAYEALAYLAQGDLRRAINSLQMAA--AADKDITSEVVYQAVSAARPGEVREVLEL 235
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+F + ++ LI+ + + Q H V + D+ K ++EKLAE + RL
Sbjct: 236 ALQGNFAGARERLDALIITYGLAGEDILRQMHRTVREL-EIPDEAKVQLIEKLAEVDFRL 294
Query: 331 QDGASEYIQI 340
+GA+ IQI
Sbjct: 295 SEGATARIQI 304
>gi|308479944|ref|XP_003102180.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
gi|308262335|gb|EFP06288.1| hypothetical protein CRE_06764 [Caenorhabditis remanei]
Length = 365
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 181/332 (54%), Gaps = 24/332 (7%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
VST N +PWVEKYRP +D+++ ++VV L K + LPH LFYGPPGTGKT+
Sbjct: 2 VSTPAVVSN--LPWVEKYRPSKLDELVAHEQVVKTLTKFIENRTLPHLLFYGPPGTGKTT 59
Query: 82 TMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQ-------TASGFNQDGK 133
T++AA +++ +LELNASD+RGI V+R+ + FAQ TAS +Q
Sbjct: 60 TVLAAARKMYSPARMSSMVLELNASDERGIDVVRNTIVNFAQTKGLQSYATASSSDQ--- 116
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PFK+VILDEAD+MT AQ ALRR +EK T + RFC+ICNY++ II + SRC++FRF
Sbjct: 117 --VPFKMVILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIIPAIQSRCTRFRF 174
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
PL + ++ RL +I E++ + L+ S GDMR I LQS A + +
Sbjct: 175 APLDQKLIVPRLDFIVNSENIKMTSDGRQALLTVSNGDMRTVINTLQSTAM--SFDTVSE 232
Query: 254 EDVLEVTGVIPNP----WIEKLLKVDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSA 308
V + G P P + +L DS + I+ + + Y+ + HD V +
Sbjct: 233 STVYQCIGQ-PTPKEMKQVVSILLNDSAKTCMNLIKTKLFDNGYALQDVITHLHDWVFTL 291
Query: 309 SSLSDKQKALILEKLAECNARLQDGASEYIQI 340
+ D+ + I+ L E L G S Q+
Sbjct: 292 -DIPDEAMSAIVTGLGEVEQNLASGCSNETQL 322
>gi|157123250|ref|XP_001660080.1| replication factor c / DNA polymerase iii gamma-tau subunit [Aedes
aegypti]
gi|108874432|gb|EAT38657.1| AAEL009465-PA [Aedes aegypti]
Length = 330
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 188/322 (58%), Gaps = 26/322 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+ D+I +E++S + K + LPH LFYGPPGTGKTST++A QL+
Sbjct: 9 LPWVEKYRPATLSDLISHEEIISTINKFIQEEQLPHLLFYGPPGTGKTSTILACARQLYK 68
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ + +LELNASDDRGI ++R+++ FA T + F+ +K++ILDEAD+MT+
Sbjct: 69 PQSFNQMVLELNASDDRGINIVRNQILNFAS-TRTIFSGG------YKLIILDEADAMTN 121
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PL+ + +L RL+++ +
Sbjct: 122 DAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFAPLSPDQILPRLEHVIDA 181
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDV---------LEVTGV 262
E + + L+ +GGDMR+ + LQS + + ++V +++T +
Sbjct: 182 EGIKVSDDGKKALMTLAGGDMRKVLNVLQST--WMAYKDVTEDNVYTCVGHPLKIDITNI 239
Query: 263 IPNPWIEKLLKVDSF-QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
+ W LL V+SF + EK E + + + + H + + L + + +L
Sbjct: 240 V--NW---LLNVESFKETFEKIQELKTNKGLALEDILTEIH-LYVHRMELPPRVMSQLLI 293
Query: 322 KLAECNARLQDGASEYIQILDL 343
K+A RL G E Q+ L
Sbjct: 294 KMAAVEERLAAGCVEKPQMASL 315
>gi|452986023|gb|EME85779.1| hypothetical protein MYCFIDRAFT_41166 [Pseudocercospora fijiensis
CIRAD86]
Length = 353
Score = 214 bits (544), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 184/333 (55%), Gaps = 13/333 (3%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
KDA ++ +T G + +PWVEKYRP +DD++ E + LK ++PH +
Sbjct: 8 KDASTNGTKGHNTHGTSTTYELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVII 67
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT++++ QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 68 SGMPGIGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT----- 122
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
P KIVILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+
Sbjct: 123 -LPAGRQKIVILDEADSMTSGAQQALRRTMEIYSGTTRFAFACNLSNKIIEPLQSRCAIL 181
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + ++ RL ICE E V + LV ++ GDMR+AI LQS G G
Sbjct: 182 RYSRLTDAQVVKRLYQICEAEKVEYSDDGIAALVFSAEGDMRQAINNLQST---HAGFGF 238
Query: 252 VNEDVLEVTGVIPNPW-IEKLLKVDSFQVLEKYIED---LILEAYSATQLFDQFHDIVMS 307
VN D + P+P ++ ++K +++ ++D L YS+ + + +
Sbjct: 239 VNGDNVFRVVDSPHPIKVQAMIKSCQEGKIDEALDDLKELWNLGYSSHDIISTMFKVTKT 298
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
SLS+ K + ++ + R+ +G Y+Q+
Sbjct: 299 IPSLSEHTKLEFIREIGFTHMRILEGVQTYLQL 331
>gi|448113261|ref|XP_004202306.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
gi|359465295|emb|CCE89000.1| Piso0_001796 [Millerozyma farinosa CBS 7064]
Length = 331
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 152/226 (67%), Gaps = 8/226 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+V Q ++VS ++K + LPH LFYGPPGTGKTST+ A +++G
Sbjct: 10 LPWVEKYRPSSLDEVNGQNDIVSTVRKFVHEGKLPHLLFYGPPGTGKTSTITALAKEIYG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT
Sbjct: 70 SNYRNMVLELNASDDRGIDVVRNQIKEFA-STMQIFSKG------FKLIILDEADAMTST 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ +LRR +EK TK+TRFC++ NY + L SRC++FRF P+++ + T + + +E
Sbjct: 123 AQNSLRRIIEKYTKNTRFCILANYAHKLNPALVSRCTRFRFSPISQEAVNTTIATVITKE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVL 257
+ +A+E+L + GDMR+A+ LQ+C A L+ ++ D++
Sbjct: 183 QLKISSEAIESLCALARGDMRKALNVLQACKASLQDDNDEIDTDMI 228
>gi|307353132|ref|YP_003894183.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
gi|307156365|gb|ADN35745.1| Replication factor C [Methanoplanus petrolearius DSM 11571]
Length = 324
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 174/310 (56%), Gaps = 13/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+DDV+ Q+E+V+ LK + LPH LF GP G GKT++ +A + FG+
Sbjct: 8 WTEKYRPKTLDDVVGQKEIVARLKSYVKTGSLPHLLFTGPAGIGKTTSAVALAREFFGEN 67
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++ ELNASD+RGI V+R+++K FA+ G FKI+ LDEAD++T+ AQ
Sbjct: 68 WQVNFRELNASDERGIDVVRNQIKQFARTAPMG-------GAEFKILFLDEADALTNDAQ 120
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME + RF L CNY S II P+ SRC+ +RF+PL + L I + E +
Sbjct: 121 AALRRTMENYAYTCRFILSCNYSSKIIDPIQSRCALYRFRPLDREAVTEELNRIAKTEGL 180
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
A+ ++ + GDMR+AI LQ A + I E + E+T I +LL +
Sbjct: 181 SITEDAMSAIIYVAQGDMRKAINALQGGAII--SPEIKEEMIYEITSTARPDEIRELLSI 238
Query: 275 ---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+F E + LI + +L +QF+ ++ + K K ++ L + + R+
Sbjct: 239 IMDGNFNAAEHKLNGLITGRGIAPLELLNQFYRTLIDNQEIDRKMKVEMISHLGDADFRI 298
Query: 331 QDGASEYIQI 340
+GA+ IQ+
Sbjct: 299 SEGANPNIQM 308
>gi|441432472|ref|YP_007354514.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
gi|440383552|gb|AGC02078.1| putative replication factor C small subunit [Acanthamoeba polyphaga
moumouvirus]
Length = 369
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 117/344 (34%), Positives = 184/344 (53%), Gaps = 34/344 (9%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPW+EKYRP+ + D+ + + ++ + K S ++ HFLFYGPPGTGKTS ++A ++F
Sbjct: 8 VPWIEKYRPRRLQDIAQSENLIKLFKNSTSKGEMTHFLFYGPPGTGKTSAILAMGREIFK 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQ-TASGFNQDGKPCPPFKIVILDEADSMTH 151
+ + R++E NASDDRGI +R+K+ A++ S N DG P +KI+ILDEADSMT
Sbjct: 68 EHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSIINPDGTIIPSYKIIILDEADSMTD 127
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALR +E+ + +TRFC ICNY++ I + SRCS FK L + M+ +L I +
Sbjct: 128 EAQDALRVIIEQYSTTTRFCFICNYITKITDAIKSRCSAVYFKKLDDECMVNKLNEISIK 187
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG--------------------- 250
ES+ LET++E S GDMR+AI LQ+ L G +
Sbjct: 188 ESMKLSKDILETIIEVSNGDMRKAIMLLQNLKYLYGFKNRTKKNFEDVSTSELKTLSFKI 247
Query: 251 --------IVNEDVLEVTGVI----PNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLF 298
I E++ E+ I I + + S L + +I Y +
Sbjct: 248 LTNNNDNDITPENIYELAACITLTRAQEIINESVSCKSVIELSDLTKKIISLGYPIDTIL 307
Query: 299 DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
Q + ++ ++L+ QK+ I+ + ++++ +EYIQ+L+
Sbjct: 308 MQLNKGILKTNTLNTIQKSKIIINSGDILLKIKECGNEYIQLLN 351
>gi|45357990|ref|NP_987547.1| replication factor C small subunit [Methanococcus maripaludis S2]
gi|50400879|sp|Q6M044.1|RFCS_METMP RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|44920747|emb|CAF29983.1| Replication factor C, small subunit [Methanococcus maripaludis S2]
Length = 315
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 180/320 (56%), Gaps = 32/320 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+GD
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKEN 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ ++ S GDMR+AI LQ+ A + + E+++ P +++ K
Sbjct: 177 LNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDE---ITEEIVYKVASKARP--DEIKK 231
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALIL 320
+ + K++E + QL++ D MS +S+K+K ++
Sbjct: 232 MTQLALNGKFVE-------AREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLV 284
Query: 321 EKLAECNARLQDGASEYIQI 340
E + EC+ R+ +G++E IQ+
Sbjct: 285 EAIGECDFRIVEGSNERIQL 304
>gi|123399546|ref|XP_001301493.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121882680|gb|EAX88563.1| hypothetical protein TVAG_409150 [Trichomonas vaginalis G3]
Length = 324
Score = 214 bits (544), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 119/326 (36%), Positives = 179/326 (54%), Gaps = 15/326 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DDV+ V+ L+ + ++P+ + GPPG GKT++++A CHQL GD
Sbjct: 6 PWVEKYRPRVLDDVVGNTAVIERLRALAAEGNIPNLILTGPPGCGKTTSLLALCHQLLGD 65
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++ ++ELNASDDRGI V+R +K FA++ + P K+V+LDE+DSMT AA
Sbjct: 66 KEKDAVIELNASDDRGIDVVRKNIKEFAKRHVA------LPEGRHKVVLLDESDSMTDAA 119
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q A+RR ME TK+TRF CN +I+P+ SRC+ RF + EN + RL ICE E
Sbjct: 120 QQAMRRIMENYTKTTRFVFACNQSEKVIEPIQSRCAIVRFSRVEENEIAARLMKICELEG 179
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVLEVTGVIPNPW----I 268
+ + + TL + GDMR AI LQS R G+V ++ + T IPNP I
Sbjct: 180 FKPESEGIATLARLADGDMRTAINGLQSTYVRY----GLVTQENVLATVDIPNPTAIADI 235
Query: 269 EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
L D+F+ + L +S + + V ++ +K K +L+++
Sbjct: 236 FTALSTDNFRNALIILNGLEKRGHSPSDIVKSLFSFVRRTDTIQEKLKLNLLKEIGLAQM 295
Query: 329 RLQDGASEYIQILDLGSIVIKANKTA 354
R+ G S +Q+ L + + K A
Sbjct: 296 RVSQGMSSNLQLDGLLATLFKVYHQA 321
>gi|451927308|gb|AGF85186.1| replication factor C small subunit [Moumouvirus goulette]
Length = 369
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 95/214 (44%), Positives = 142/214 (66%), Gaps = 1/214 (0%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW+EKYRP+ + D+ + + ++ + K +S ++ HFLFYGPPGTGKTS ++A ++F
Sbjct: 8 IPWIEKYRPRRLQDIAQSENLIKLFKNSISKGEMTHFLFYGPPGTGKTSAILAMGREIFK 67
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF-NQDGKPCPPFKIVILDEADSMTH 151
+ + R++E NASDDRGI +R+K+ A++ + N DG P +KI+ILDEADSMT
Sbjct: 68 EHFPTRVIEFNASDDRGINAVREKITNEAKKYVTSISNPDGTIIPSYKIIILDEADSMTD 127
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALR +E+ + +TRFC ICNY++ I + SRCS FK L ++ M+ +L I +
Sbjct: 128 EAQDALRVIIEQYSTTTRFCFICNYITKITDAIKSRCSAIYFKKLDDDCMVNKLNEISIK 187
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245
ES+ + LET++E S GDMR+AI LQ+ L
Sbjct: 188 ESMKLSKEILETIIEVSNGDMRKAIMLLQNLKYL 221
>gi|225679164|gb|EEH17448.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb03]
Length = 391
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 140/215 (65%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV +++ + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+RD++KTFA + + + FK++ILDEAD
Sbjct: 105 VKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIILDEAD 164
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T + RFC+I NY + L SRC++FRF PL E + +
Sbjct: 165 AMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQ 224
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V +A+++LVE S GDMRRA+ LQ+C
Sbjct: 225 VIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQAC 259
>gi|448471999|ref|ZP_21601026.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
gi|445820426|gb|EMA70249.1| replication factor C small subunit [Halorubrum aidingense JCM
13560]
Length = 327
Score = 213 bits (543), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 118/310 (38%), Positives = 177/310 (57%), Gaps = 17/310 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP+++ D+ Q+ +V L+ + D+PH LF GP G GKT+ A +++G D
Sbjct: 18 WIEKYRPQSLGDIHGQEAIVERLQSYIDQDDIPHLLFSGPAGVGKTTAATAIAREVYGED 77
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD RGI V+RD++K FA+ S F D F+IV LDEADS+T A
Sbjct: 78 NWRGNFLELNASDQRGIDVVRDRIKGFAR---SSFGGD------FRIVFLDEADSLTDDA 128
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL++ + + + I E
Sbjct: 129 QSALRRTMEQFSDNTRFILSCNYSSKIIDPIQSRCAVFRFSPLSDAAVAGQTREIAAAEG 188
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ ++ LV + GDMRRAI LQ+ A G+ + E V +T IE ++
Sbjct: 189 IEVTDAGVDALVYAADGDMRRAINSLQAAATT--GDVVDEEAVYAITATARPEEIESMVT 246
Query: 274 ---VDSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
F ++ L+ E + + DQ H V LS+++ ++E++ E + R
Sbjct: 247 DALAGDFAKARATLDSLLTETGMAGGDVIDQLHRSVWE-FDLSEREAVKLMERIGEADYR 305
Query: 330 LQDGASEYIQ 339
+ +GA+E +Q
Sbjct: 306 IAEGANEQVQ 315
>gi|268325481|emb|CBH39069.1| replication factor C, small subunit [uncultured archaeon]
gi|268325789|emb|CBH39377.1| replication factor C, small subunit [uncultured archaeon]
Length = 322
Score = 213 bits (543), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 116/310 (37%), Positives = 181/310 (58%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+ +++V Q+ ++ L+ + +LPH +F GP G GKT+ +A + + D
Sbjct: 7 WTEKYRPRKLEEVSGQEAIIRNLQSYVKKRNLPHLIFSGPAGVGKTAAAVAMAREFYDDT 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ E ELNASD+RGI+V+R+ +K FA+ G FKI+ LDEAD++T AAQ
Sbjct: 67 WAENFTELNASDERGIEVVRNTIKNFARTMPIG-------DAAFKIIFLDEADALTDAAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II+P+ SRCS +RFK L+ + + +R +YI + E +
Sbjct: 120 SALRRTMERYSGTCRFILSCNYSSKIIEPIQSRCSVYRFKSLSYDAIASRAKYIADTEGL 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
AL + S GDMRRAI LQS + L I E + E+T IE L++
Sbjct: 180 TLSEDALRAINYVSMGDMRRAINALQSASVLSN--EIKPEMIYEITATARPDEIEALIET 237
Query: 275 ----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+ L+K + LI + S ++ Q H + + +S +QK +++++ E + R+
Sbjct: 238 AMAGEFLDALDK-LGVLIDKGISGDEILAQMHRLAIKM-DISARQKVELMDRIGETDYRI 295
Query: 331 QDGASEYIQI 340
+GA+E IQ+
Sbjct: 296 TEGANERIQL 305
>gi|171677049|ref|XP_001903476.1| hypothetical protein [Podospora anserina S mat+]
gi|170936592|emb|CAP61251.1| unnamed protein product [Podospora anserina S mat+]
Length = 389
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 151/243 (62%), Gaps = 10/243 (4%)
Query: 10 LGKDAPSSSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSG 63
+ KD SS + N PV PWVEKYRP ++DDV Q++++ + K +
Sbjct: 14 VSKDVTFSSSNAAKGKRSAANLPVEAEDSLPWVEKYRPVSLDDVSGHQDILATINKFVDS 73
Query: 64 ADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFA- 121
LPH L YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTFA
Sbjct: 74 NRLPHLLLYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGIDVVREQIKTFAS 133
Query: 122 --QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
Q + G + FK++ILDEAD+MT AQ ALRR MEK T +TRFC+I NY
Sbjct: 134 TKQIFSLGASTSKTGLAGFKLIILDEADAMTSTAQMALRRIMEKYTVNTRFCIIANYSHK 193
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
+ L SRC++FRF PL E + + + ++E + +A + LV+ S GDMRRA+ L
Sbjct: 194 LSPALLSRCTRFRFSPLKERDIRVLVDKVIDEEHIKIKPEAADALVKLSKGDMRRALNVL 253
Query: 240 QSC 242
Q+C
Sbjct: 254 QAC 256
>gi|302653321|ref|XP_003018488.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
gi|291182138|gb|EFE37843.1| hypothetical protein TRV_07502 [Trichophyton verrucosum HKI 0517]
Length = 416
Score = 213 bits (543), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 114/266 (42%), Positives = 154/266 (57%), Gaps = 36/266 (13%)
Query: 13 DAPSSSKTSVSTSGKTRNK--------PV------PWVEKYRPKTIDDVIEQQEVVSVLK 58
DAP + T+ T+ T K PV PWVEKYRP T+DDV Q++++ +
Sbjct: 11 DAPPARDTAAFTADPTDVKGKRIVADLPVEAGDNLPWVEKYRPDTLDDVSGHQDIIATIN 70
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKV 117
+ + LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++
Sbjct: 71 RFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGSKNMRQMVLELNASDDRGIDVVREQI 130
Query: 118 KTFA---------------------QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAA 156
KTFA +Q S G FK++ILDEAD+MT AAQ A
Sbjct: 131 KTFASTSLVYKGRSEAESLTAIVGTKQIFSTAPSSGSGLGAFKLIILDEADAMTSAAQMA 190
Query: 157 LRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMC 216
LRR MEK T +TRFC+I NY + L SRC++FRF PL E + + + E E V
Sbjct: 191 LRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRRLVDTVIETEEVQI 250
Query: 217 DFKALETLVETSGGDMRRAITCLQSC 242
A+++LV+ S GDMRRA+ LQ+C
Sbjct: 251 QPDAIDSLVKLSKGDMRRALNVLQAC 276
>gi|226290876|gb|EEH46304.1| replication factor C subunit 3 [Paracoccidioides brasiliensis Pb18]
Length = 395
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 140/215 (65%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV +++ + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNSLDDVSGHHDIIGTINRFIDSNRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+RD++KTFA + + + FK++ILDEAD
Sbjct: 105 VKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSMAPVAKSESSLGAFKLIILDEAD 164
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T + RFC+I NY + L SRC++FRF PL E + +
Sbjct: 165 AMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQ 224
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V +A+++LVE S GDMRRA+ LQ+C
Sbjct: 225 VIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQAC 259
>gi|224074887|ref|XP_002304476.1| predicted protein [Populus trichocarpa]
gi|222841908|gb|EEE79455.1| predicted protein [Populus trichocarpa]
Length = 330
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 189/332 (56%), Gaps = 26/332 (7%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
+++S + N +PWVEKYRP + D++ Q+ VS L+ ++P+ + GPPGTGKT+
Sbjct: 1 MASSSNSSNYDIPWVEKYRPNKVADIVGNQDAVSRLQVIARDGNMPNLILAGPPGTGKTT 60
Query: 82 TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FK 139
+++A H+L G +E +LELNASDDRGI V+R+K+K FAQ+ + PP K
Sbjct: 61 SILALAHELLGPNSKEAVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGQHK 112
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
IVILDEADSMT AQ ALRRTME + STRF L CN S II+P+ SRC+ RF L++
Sbjct: 113 IVILDEADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQ 172
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEV 259
+L RL + E V + LE ++ T+ GDMR+A+ LQ A G + E+V +V
Sbjct: 173 EILGRLMVVVGAEQVPYVPEGLEAIIFTADGDMRQALNNLQ--ATHSGFHFVNQENVFKV 230
Query: 260 TGVIPNPW-IEKLLKVDSFQVLEKYIED-------LILEAYSATQLFDQFHDIVMSASSL 311
P+P ++ +++ QVLE +D L YS T + I+ + +
Sbjct: 231 CDQ-PHPLHVKNMVR----QVLEGKFDDACSGLKHLYDMGYSPTDIITTLFRIIKN-YDM 284
Query: 312 SDKQKALILEKLAECNARLQDGASEYIQILDL 343
++ K +++ + R+ DG Y+Q+ L
Sbjct: 285 AEYMKLEFMKETGFAHMRICDGVGSYLQLCGL 316
>gi|448712798|ref|ZP_21701827.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
gi|445790224|gb|EMA40893.1| replication factor C small subunit [Halobiforma nitratireducens JCM
10879]
Length = 335
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 116/329 (35%), Positives = 188/329 (57%), Gaps = 19/329 (5%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S+ + T K W+EKYRP+ +DD+ + +V L + + DLPH +F GP GT
Sbjct: 2 SEADAEAAEPTPGKTEVWIEKYRPERLDDIKGHENIVPRLTRYVEQDDLPHLMFAGPAGT 61
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT+ A +++ D ++E LELNASD RGI V+RD++K FA+ + G++
Sbjct: 62 GKTTAAQAIAREVYEDDWQENFLELNASDQRGIDVVRDRIKDFARSSFGGYDH------- 114
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
+I+ LDEAD++T AQ+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L
Sbjct: 115 -RIIFLDEADALTSDAQSALRRTMEQFSSNTRFILSCNYSSQIIDPIQSRCAVFRFTELT 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
++ + +++ I +E + ++ LV + GDMR+ I LQ+ A + GE + + V
Sbjct: 174 DDAIEAQVREIATEEGIELTDDGVDALVYAADGDMRKGINGLQAAAVM--GETVDEDTVF 231
Query: 258 EVTGVIPNPWIEKLLK--VDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSD 313
+T +E+++ +D F +EDL+++ + + DQ H SA
Sbjct: 232 AITSTARPEEVEEMVDHAIDGDFTAARAALEDLLMDRGLAGGDVIDQLH---RSAWEFDI 288
Query: 314 KQKALI--LEKLAECNARLQDGASEYIQI 340
++A + LE+L E + R+ +GA+E +Q+
Sbjct: 289 PEQATVRLLERLGEVDYRITEGANERLQL 317
>gi|340518366|gb|EGR48607.1| replication factor C, subunit 3 [Trichoderma reesei QM6a]
Length = 391
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 145/372 (38%), Positives = 199/372 (53%), Gaps = 53/372 (14%)
Query: 13 DAPSSSK----TSVSTSGK--TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKC 60
D P S ++ +T GK N PV PWVEKYRP T+DDV Q++++ + K
Sbjct: 11 DGPGPSADITFSAEATKGKRSAANLPVEAEDTLPWVEKYRPVTLDDVSGHQDILATINKF 70
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKT 119
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KT
Sbjct: 71 VESNRLPHLLLYGPPGTGKTSTILALARRIYGTANMRQMVLELNASDDRGIDVVREQIKT 130
Query: 120 FAQQ----TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175
FA T G G FK++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I N
Sbjct: 131 FASTKQIFTMGGGAAKGNSIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIAN 190
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235
Y + L SRC++FRF PL E + ++ + E+E V +A++ LV+ S GDMRRA
Sbjct: 191 YAHKLSPALLSRCTRFRFSPLKEGDIRVLVEKVVEEEGVKIQGEAVDALVKLSKGDMRRA 250
Query: 236 ITCLQSCA------RLKGG----------EGIVNEDVLEVTGVIPNP-----WIEKLLK- 273
+ LQ+C RLK E I E + P P +E LL
Sbjct: 251 LNVLQACHASSTPLRLKNEPKPPESEIQRETITTETIYNCIAA-PQPDAIKEIMETLLST 309
Query: 274 ------VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
+++ L K + L L A T L +Q + +SA ++ LE LAE
Sbjct: 310 PDVTSCLNTINAL-KTTQGLAL-ADIITALMEQLTKLEVSAEAM-----ITWLEGLAEIE 362
Query: 328 ARLQDGASEYIQ 339
R+ G SE +Q
Sbjct: 363 HRVAGGGSEMVQ 374
>gi|325096741|gb|EGC50051.1| activator 1 subunit 3 [Ajellomyces capsulatus H88]
Length = 443
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/215 (46%), Positives = 142/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T++DV +++S + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNTLEDVSGHHDIISTINRFIDKNRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+RD++KTFA + + + FK++ILDEAD
Sbjct: 105 VKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPSTKSESTLGAFKLIILDEAD 164
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 165 AMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEEDIRVLVDQ 224
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V +A+++LV+ S GDMRRA+ LQ+C
Sbjct: 225 VVEKERVRIQPEAIDSLVQLSKGDMRRALNVLQAC 259
>gi|147918695|ref|YP_687582.1| replication factor C small subunit [Methanocella arvoryzae MRE50]
gi|121687726|sp|Q0W037.1|RFCS_UNCMA RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|110622978|emb|CAJ38256.1| replication factor C (clamp loader), small subunit [Methanocella
arvoryzae MRE50]
Length = 322
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 176/313 (56%), Gaps = 20/313 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+ ++DVI Q++ L + +LPH LF GPPG GKT+ +A +L+G+
Sbjct: 7 WTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGET 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ +ELNASD+RGI V+R+ +K FA+ G + FKI+ LDEAD++T AQ
Sbjct: 67 WHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAK-------FKIIFLDEADALTSDAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + RF + CNY S II+P+ SRC+ +RF PL + T + I + E +
Sbjct: 120 SALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGL 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
+ ++ L+ + GDMRRAI LQS A + + I + + + T IE +LK+
Sbjct: 180 KIEKDGMDALIYVARGDMRRAINALQSAATI--AKDITADVIYQTTSTAKPKEIEDMLKL 237
Query: 275 -------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
DS L+ E LI S T + DQ + + D AL+ +++ E +
Sbjct: 238 ALNGQFMDSRNKLD---ELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALV-DRIGEAD 293
Query: 328 ARLQDGASEYIQI 340
RL +GASE IQI
Sbjct: 294 FRLTEGASERIQI 306
>gi|134046237|ref|YP_001097722.1| replication factor C small subunit [Methanococcus maripaludis C5]
gi|166225155|sp|A4FZ74.1|RFCS_METM5 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|132663862|gb|ABO35508.1| replication factor C small subunit [Methanococcus maripaludis C5]
Length = 315
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 180/320 (56%), Gaps = 32/320 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+G+
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKET 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ ++ S GDMR+AI LQ+ A + V E+++ P +++ K
Sbjct: 177 LTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS---DTVTEEIVYKVASKARP--DEIKK 231
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALIL 320
+ + K++E + QL++ D MS +S+K+K ++
Sbjct: 232 MTHLALNGKFVE-------AKEQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLV 284
Query: 321 EKLAECNARLQDGASEYIQI 340
E + EC+ R+ +G++E IQ+
Sbjct: 285 EAIGECDFRIVEGSNERIQL 304
>gi|320594193|gb|EFX06596.1| DNA replication factor c subunit [Grosmannia clavigera kw1407]
Length = 386
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 150/237 (63%), Gaps = 14/237 (5%)
Query: 16 SSSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHF 69
+SSK ST+ N PV PWVEKYRP ++DDV Q++++ + K + LPH
Sbjct: 23 ASSKGKRSTAA---NLPVEAEDSLPWVEKYRPVSLDDVSGHQDILATINKFVDSNRLPHL 79
Query: 70 LFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF 128
L YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTFA T F
Sbjct: 80 LLYGPPGTGKTSTILALARRIYGAENTRQMVLELNASDDRGIDVVREQIKTFAS-TRQIF 138
Query: 129 NQDGKPCPP---FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
P P +K+++LDEAD+MT+ AQ ALRR MEK T +TRFC+I NY + L
Sbjct: 139 AASSGPAPSLARYKLIVLDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALL 198
Query: 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
SRC++FRF PL E + + + E V +A + LV S GDMRRA+ LQ+C
Sbjct: 199 SRCTRFRFSPLKEADIRVLVNKVIADEDVKIMSEAADALVTLSRGDMRRALNVLQAC 255
>gi|67902154|ref|XP_681333.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|40740496|gb|EAA59686.1| hypothetical protein AN8064.2 [Aspergillus nidulans FGSC A4]
gi|259480821|tpe|CBF73811.1| TPA: subunit of heteropentameric Replication factor (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 398
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/215 (47%), Positives = 144/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV +++++ + + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNTLDDVSGHKDILATINRFVEANQLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPC-PPFKIVILDEAD 147
R+ +LELNASDDRGI V+R+++KTFA Q + + GK FK++ILDEAD
Sbjct: 105 SKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAPSATGKSSLASFKLIILDEAD 164
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 165 AMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRVLIDQ 224
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V +A+++LV S GDMRRA+ LQ+C
Sbjct: 225 VIEKEDVRIQPEAVDSLVTLSRGDMRRALNVLQAC 259
>gi|84996647|ref|XP_953045.1| replication factor C subunit [Theileria annulata strain Ankara]
gi|65304041|emb|CAI76420.1| replication factor C subunit, putative [Theileria annulata]
Length = 347
Score = 213 bits (541), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 122/321 (38%), Positives = 181/321 (56%), Gaps = 9/321 (2%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ D+I ++++S L LPH LF+GPPG+GKTST++A ++G+
Sbjct: 8 PWVEKYRPETLQDIISHEDIMSTLMVFAEKGQLPHLLFHGPPGSGKTSTILAISRYMYGN 67
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQT---ASGFNQDGKPCPPFKIVILDEADSMT 150
+LELNASD+RGI +RD++K F++ + S + P K++ILDEAD MT
Sbjct: 68 SRNGFVLELNASDERGIDTVRDQIKAFSETSNTFTSSIPVEDPPRTNLKLIILDEADQMT 127
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
+AAQ ALRR ME + + RFCLICN+++ II P+ SRC+ FRF+PL + + R + I +
Sbjct: 128 NAAQNALRRIMEIYSNNVRFCLICNFMNKIIPPIQSRCTGFRFQPLKPDVVRERTKEIAK 187
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED---VLEVTGVIPNPW 267
E+V AL+ LVE GDMRR + CLQ + + D +L +G+ +
Sbjct: 188 LENVKITDCALDALVEIGQGDMRRVLNCLQVTSMSHSSKTDFTVDANLILSTSGLPQSSE 247
Query: 268 IEKLLKVDSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALI--LEKLA 324
I+ LLK ++ I +L +L L D + + +I L +LA
Sbjct: 248 IDHLLKSLMQNTFKECIYELNLLHHKKGHSLEDIVKGLYKCVVKIDWPNVPIIQLLIRLA 307
Query: 325 ECNARLQDGASEYIQILDLGS 345
+ RL GA+ IQI + S
Sbjct: 308 DVEERLSAGANSNIQIASIVS 328
>gi|209880093|ref|XP_002141486.1| replication factor C, subunit 5 [Cryptosporidium muris RN66]
gi|209557092|gb|EEA07137.1| replication factor C, subunit 5, putative [Cryptosporidium muris
RN66]
Length = 371
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/346 (34%), Positives = 186/346 (53%), Gaps = 39/346 (11%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP++++++I ++++ + K ++ LPH LF+GPPGTGKTST+ A ++G
Sbjct: 7 LPWVEKYRPESLEELISHKDIIGTIGKFINSGQLPHLLFHGPPGTGKTSTIHALSKFIYG 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN---------QDGKPCPPF----- 138
+ ++ +LELNASDDRGI V+RD +K+FA+ ++ + + G F
Sbjct: 67 EKKKQMVLELNASDDRGINVVRDAIKSFAESASTNMDCFEDIQTRGESGTTNLIFNRNFW 126
Query: 139 ---KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
K++ILDEAD MT AQ ALRR +EK ++ RFC+ICNYV+ II L SRC++FRF P
Sbjct: 127 RNVKLIILDEADMMTPVAQMALRRILEKYSEHVRFCIICNYVNKIIPALQSRCTRFRFSP 186
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG------- 248
L+ N M ++ I + E + + L+E + GDMR+ + LQSC G
Sbjct: 187 LSINEMENKILVISKAEGIYTSKDGITALIEAARGDMRKVLNILQSCHMDNYGNVHEYMS 246
Query: 249 -----------EGIVNEDVLEVTGVIPNP----WIEKLLKVDSFQVLEKYIEDLILEAYS 293
+NE ++ T IP ++ +L +F + + E
Sbjct: 247 SCDFTIMNENTNTYINEQMVHRTLGIPTSKEIDFLMNILTNKTFSEGTNALMNYYREYGY 306
Query: 294 ATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
ATQ F + + D LI+++LA+ RL GASE +Q
Sbjct: 307 ATQDFVNLLYRRLLKINWPDSVIPLIMKRLADIEYRLSCGASETVQ 352
>gi|15223967|ref|NP_177871.1| replication factor C subunit 3 [Arabidopsis thaliana]
gi|12323400|gb|AAG51681.1|AC010704_25 putative replication factor C; 24844-22715 [Arabidopsis thaliana]
gi|17529332|gb|AAL38893.1| putative replication factor C [Arabidopsis thaliana]
gi|21436375|gb|AAM51357.1| putative replication factor C [Arabidopsis thaliana]
gi|332197861|gb|AEE35982.1| replication factor C subunit 3 [Arabidopsis thaliana]
Length = 369
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 103/213 (48%), Positives = 140/213 (65%), Gaps = 5/213 (2%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
++K PWVEKYRP+++DDV ++++ + + + LPH L YGPPGTGKTST++A
Sbjct: 35 QSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVAR 94
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
+L+G YR ILELNASDDRGI V+R +++ FA + + K+V+LDEAD+
Sbjct: 95 KLYGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSS-----VKLVLLDEADA 149
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR +EK TKSTRF LI N+V+ II L SRC++FRF PL M RL+++
Sbjct: 150 MTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHV 209
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
E E ++ L LV S GDMR+A+ LQS
Sbjct: 210 IEAERLVVSDCGLAALVRLSNGDMRKALNILQS 242
>gi|50513622|pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 187/335 (55%), Gaps = 21/335 (6%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
KT + +PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++
Sbjct: 3 KTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILD 144
H+L G Y + +LELNASDDRGI V+R+++K FAQ+ PP KIVILD
Sbjct: 63 AHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH--------LPPGKHKIVILD 114
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME + STRF CN + II+PL S+C+ R+ L++ +L R
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKR 174
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L I + E V LE ++ T+ GDMR+AI LQS G G+VN D + P
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSP 231
Query: 265 NPWIEKLLKV-----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
+P I K + + DS Q+L DL + YS+ + + + + + + + +
Sbjct: 232 HPLIVKKMLLASNLEDSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEM 288
Query: 320 LEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
++++ + R+ +G Y+Q+ + + + K N A
Sbjct: 289 IKEIGLTHMRILEGVGTYLQLASMLAKIHKLNNKA 323
>gi|257076223|ref|ZP_05570584.1| replication factor C small subunit [Ferroplasma acidarmanus fer1]
Length = 318
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 177/310 (57%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP + DVI ++ ++ L + ++PH +F GP GTGKTST IA LFGD
Sbjct: 5 WTEKYRPSKLSDVIGEKGNINRLNAYVKDKNIPHLIFAGPQGTGKTSTAIALAISLFGDS 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++E +ELNAS+DRGI +IRD +K FA+ S N G FKI+ LDEAD +T AQ
Sbjct: 65 WKENFMELNASNDRGIDIIRDNIKNFAKIRPS--NDLG-----FKIIFLDEADHLTGDAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +TRF CNY S II P+ SRC RFKP+ +M RL+ I ++E+
Sbjct: 118 AALRRTMEMFYNTTRFIFSCNYSSKIIPPIQSRCVVLRFKPIDRESMKNRLKDIAKKENF 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
D +L+ + E S GDMR+A+ LQ+ +L G + + E++G I + L+ +
Sbjct: 178 EIDDDSLDAIYEISDGDMRKAVNVLQAV-KLSG--KVSATAIYEISGEINRDEYKNLINM 234
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+F Y++ ++++ S + H + ++ KQK I+ LAE R+
Sbjct: 235 AIEGNFNDARNYLDKMLIDYGLSGIDIIKGMHSSI-RGEQIAYKQKLEIIMALAEAEFRI 293
Query: 331 QDGASEYIQI 340
+G ++ IQ+
Sbjct: 294 VEGGTDNIQM 303
>gi|371943985|gb|AEX61813.1| putative replication factor C small subunit [Megavirus courdo7]
gi|425701544|gb|AFX92706.1| putative replication factor C small subunit [Megavirus courdo11]
Length = 364
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 191/345 (55%), Gaps = 36/345 (10%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPW+EKYRP+ + D ++ Q ++++ K + ++ HFLFYGPPGTGKTS ++A ++F
Sbjct: 9 VPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREIFK 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-DGKPCPPFKIVILDEADSMTH 151
+ + R++E NASDDRGI +R+K+ A++ + + DG P +KI+ILDEADSMT
Sbjct: 69 EHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADSMTD 128
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALR +E+ + +TRFC ICNY+S I + SRC+ FK L + M+ +L+ I +
Sbjct: 129 EAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDECMIDKLKEISTK 188
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQ-------------------SCARLK------ 246
ES+ + L T+++ S GDMR+AI LQ S A LK
Sbjct: 189 ESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYLYSFKKRKCVDFDKMSIAELKSLSFNN 248
Query: 247 ---GGEGIV-NEDVLEVTGVIPNPWIEKLLKVDSFQV-----LEKYIEDLILEAYSATQL 297
E I+ +ED+ ++ I K++ DS Q L + +I Y +
Sbjct: 249 LTQSQENIIESEDIYKLAASITMKQSLKIIH-DSIQCKNIIELSDLCKQIITIGYPIDTI 307
Query: 298 FDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
Q + ++ ++ L+ QK+ I+ + ++++ +EYIQ+L+
Sbjct: 308 LMQLNKAILESNKLNTIQKSKIIINSGDVLLKIKECGNEYIQLLN 352
>gi|115449001|ref|NP_001048280.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|46805779|dbj|BAD17147.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|46806135|dbj|BAD17365.1| putative replication factor C 36kDa subunit [Oryza sativa Japonica
Group]
gi|113537811|dbj|BAF10194.1| Os02g0775200 [Oryza sativa Japonica Group]
gi|215697717|dbj|BAG91711.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218191668|gb|EEC74095.1| hypothetical protein OsI_09136 [Oryza sativa Indica Group]
Length = 361
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 132/321 (41%), Positives = 180/321 (56%), Gaps = 29/321 (9%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+ PWVEKYRP+++ DV +++V + + + LPH L YGPPGTGKTST++A +L
Sbjct: 36 RAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 95
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G Y ILELNASD+RGI V+R +++ FA + F K+V+LDEAD+MT
Sbjct: 96 YGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAK----QSVKMVLLDEADAMT 151
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR +EK T+STRF LICN+V+ II L SRC++FRF PL + RL++I +
Sbjct: 152 KDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQ 211
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW--- 267
E + D L LV S GDMR+A+ LQS + I E V TG NP
Sbjct: 212 SEGLDVDDGGLTALVRLSNGDMRKALNILQSTH--MASKQITEEAVYLCTG---NPMPKD 266
Query: 268 IEKL---LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL---SDKQKALILE 321
IE++ L +SF K I D+ + A L D ++ M + SD + LI
Sbjct: 267 IEQIAYWLLNESFSTSFKCISDMKMRKGLA--LVDIIREVTMFVFKIQMPSDVRIKLI-N 323
Query: 322 KLAE--------CNARLQDGA 334
LA+ CN +LQ GA
Sbjct: 324 DLADIEYRLSFACNDKLQLGA 344
>gi|392597749|gb|EIW87071.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 334
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 133/340 (39%), Positives = 191/340 (56%), Gaps = 33/340 (9%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APSS+ T+ +PWVEKYRP +DDV+ E + LK + PH + G
Sbjct: 2 APSSAATAAYE--------LPWVEKYRPTLLDDVVGNVETIERLKVIAKDGNCPHIIISG 53
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R+K+K+FAQ+ +
Sbjct: 54 LPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIKSFAQKKVT------- 106
Query: 134 PCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PP KIVILDEADSMT AQ ALRRTME + +TRFCL CN + II+P+ SRC+
Sbjct: 107 -LPPGRHKIVILDEADSMTGGAQQALRRTMEIYSNTTRFCLACNMSNKIIEPIQSRCAIL 165
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + +L RL IC++E+V + L L+ T GDMR+AI LQS G G
Sbjct: 166 RYAKLRDTEVLARLLEICKEENVQYNDDGLTALIFTCEGDMRQAINNLQST---HSGFGF 222
Query: 252 VN-EDVLEVTGVIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHD 303
V+ E+V +V P+P I + + +VDS LEK + +L + YSA +
Sbjct: 223 VSGENVFKVCDQ-PHPVIVQAIIRACHKCEVDS--ALEK-LHELWDQGYSAVDIVVTLFR 278
Query: 304 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ + L + K ++++ + R+ +G +Q+ L
Sbjct: 279 VAKTFDELPEYTKLEYIKEIGFTHMRVLEGVGTLMQLAGL 318
>gi|388582885|gb|EIM23188.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 331
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 184/322 (57%), Gaps = 20/322 (6%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
K+ N VPWVEKYRP+ + D++ Q+ V L+ ++PH + G PG GKT+ ++A
Sbjct: 3 KSANYEVPWVEKYRPRVLSDIVGNQDTVKRLEVIAQDGNMPHMIMSGTPGIGKTTAVLAL 62
Query: 87 CHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVIL 143
H L G D+++E +LELNASD+RGI V+R+++K+FAQ+ + PP KIVIL
Sbjct: 63 AHTLLGPDVFKEAVLELNASDERGIDVVRNRIKSFAQKKIA--------LPPGRHKIVIL 114
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEADSMT AQ ALRRTME + +TRF CN + II+P+ SRC+ RF L + +L
Sbjct: 115 DEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPIQSRCAILRFSKLRDIELLQ 174
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
RL+ I E+E+ + E L+ TS GDMR+A+ LQS G G+V D +
Sbjct: 175 RLRQIAEKENADVTDEGYEALIFTSEGDMRQAVNNLQST---HTGLGLVTPDAVFKVCDQ 231
Query: 264 PNP-WIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
P+P ++ LL K D L K +++L Y+A + + + SL + K
Sbjct: 232 PHPLLVQNLLESCHKADIEDALSK-LDELWTHGYAAIDIIQTLFRVARNTQSLEESLKLE 290
Query: 319 ILEKLAECNARLQDGASEYIQI 340
++++ + R+ +G + +Q+
Sbjct: 291 YIKEIGWTHMRILEGVATIVQL 312
>gi|170290625|ref|YP_001737441.1| DNA replication ATPase HolB small subunit [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174705|gb|ACB07758.1| ATPase involved in DNA replication HolB, small subunit [Candidatus
Korarchaeum cryptofilum OPF8]
Length = 331
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 176/313 (56%), Gaps = 17/313 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-- 92
WVEKYRPKT+DDV+ Q +++ LK + +PH LF GP GTGKT+T +A + L+
Sbjct: 6 WVEKYRPKTLDDVVGQDDIIRALKGFVEKRSMPHLLFAGPAGTGKTTTALALANDLYKSE 65
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
++ LELNASD+RGI IR K+K FA+ G PFKI+ LDEAD++T
Sbjct: 66 ELVAANYLELNASDERGIDTIRTKIKDFAKTAPFG-------EVPFKIIHLDEADNLTAD 118
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR ME + +TRF CNY S II+P+ SRC+ FRF P+ E + RL I E+E
Sbjct: 119 AQQALRRIMEMYSATTRFIFACNYSSKIIEPIQSRCAVFRFGPIPEEAIKNRLIMIAERE 178
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----W 267
+ + ++ + GD+R+AI LQ+ + + V+ V+ + +P
Sbjct: 179 GLKYTEDGISAIIYVAEGDLRKAINLLQTASAMA---STVDSKVVYRVAGLAHPEEVRAM 235
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
I LK E +I SA + Q + +M++ SLSDK+KA+++ L+E +
Sbjct: 236 INSALKGKFLSAREALRNLMINYGMSAQDVIRQLNREIMASKSLSDKEKAMLMIFLSEVD 295
Query: 328 ARLQDGASEYIQI 340
R+ +GA +Q+
Sbjct: 296 FRVTEGAHGDVQL 308
>gi|366997707|ref|XP_003683590.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
gi|357521885|emb|CCE61156.1| hypothetical protein TPHA_0A00710 [Tetrapisispora phaffii CBS 4417]
Length = 325
Score = 212 bits (540), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 117/313 (37%), Positives = 175/313 (55%), Gaps = 17/313 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + D++ ++ + LK ++PH + G PG GKT+++ H+L G
Sbjct: 10 LPWVEKYRPHLLKDIVGNEDTIERLKHIAKDGNMPHMIISGLPGIGKTTSIHCLAHELLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y + +LELNASDDRGI V+R+++K FAQ+ P KI+ILDEADSMT
Sbjct: 70 DSYSQAVLELNASDDRGIDVVRNQIKHFAQKKCH------LPTGKHKIIILDEADSMTAG 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L++ +L RL I + E
Sbjct: 124 AQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYTKLSDEQVLKRLLEITKAE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
V LE L+ T+ GDMR+AI LQS G +VN D + P+P I K +
Sbjct: 184 DVKYTNDGLEALIFTAEGDMRQAINNLQSTV---AGHSLVNGDNVFKIVDSPHPLIVKKM 240
Query: 273 KV-----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
+ DS +L K + D + YSA + + + L + Q+ +++++ +
Sbjct: 241 ILAPTLDDSLLILRKELWD---KGYSAVDIVTTSFRVTKTLYELKEPQRLDMIKEIGITH 297
Query: 328 ARLQDGASEYIQI 340
R+ +G Y+Q+
Sbjct: 298 MRILEGVGTYLQL 310
>gi|323508283|emb|CBQ68154.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Sporisorium
reilianum SRZ2]
Length = 341
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 123/346 (35%), Positives = 197/346 (56%), Gaps = 22/346 (6%)
Query: 17 SSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
+S +S + + T +PWVEKYRP ++DV+ ++ + LK + + PH L G PG
Sbjct: 4 TSGSSAAPAAVTTGYELPWVEKYRPMRLNDVVGNKDTIDRLKVIQNDGNCPHLLISGLPG 63
Query: 77 TGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP 136
GKT++++ L GD Y+E +LELNASD+RG+ V+R+K+KTFAQ+ S P
Sbjct: 64 IGKTTSVLCLARALLGDAYKEGVLELNASDERGVDVVRNKIKTFAQKKVS--------LP 115
Query: 137 P--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
P KI+ILDEADSMT AAQ ALRRTME + +TRFC CN + II+P+ SRC+ R+
Sbjct: 116 PGRHKIIILDEADSMTPAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYG 175
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
+ + +L RL ICE E+V + L ++ T+ GDMR+AI LQS G G V+
Sbjct: 176 KVRDEQILKRLLEICEMEAVEYSDEGLAAIIFTTEGDMRQAINNLQSTWT---GLGFVSP 232
Query: 255 DVLEVTGVIPNPWIEKLL-----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 309
D + P+P++ + L K D +EK ++++ + Y+A + +V +
Sbjct: 233 DNVFKVCDQPHPFLIRALLLSCKKGDIDDAMEK-LDEIWSKGYAAVDIVTTLFRVVKTLD 291
Query: 310 SLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTAV 355
+ + K ++++ + R+ +G + +Q LG ++ + K ++
Sbjct: 292 GIPEATKLKFIKEIGWTHMRILEGVATVVQ---LGGLIARLCKLSM 334
>gi|443896635|dbj|GAC73979.1| replication factor C, subunit RFC2 [Pseudozyma antarctica T-34]
Length = 374
Score = 212 bits (539), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 126/344 (36%), Positives = 198/344 (57%), Gaps = 21/344 (6%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
S +S + SG T +PWVEKYRP +DDV+ ++ + LK + + PH L G PG
Sbjct: 7 SGSSAAPSG-TMGYELPWVEKYRPLNLDDVVGNKDTIDRLKVIQNDGNCPHLLISGLPGI 65
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKT++++ L GD Y+E +LELNASD+RG+ V+R+K+KTFAQ+ S P
Sbjct: 66 GKTTSVLCLARALLGDAYKEGVLELNASDERGVDVVRNKIKTFAQKKVS------LPAGR 119
Query: 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLA 197
KIVILDEADSMT AAQ ALRRTME + +TRFC CN + II+P+ SRC+ R+ +
Sbjct: 120 HKIVILDEADSMTPAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYGKVK 179
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDV 256
+ +L RL ICE E V + L ++ T+ GDMR+AI LQS G G VN E+V
Sbjct: 180 DEQILKRLLEICEMEKVEYTDEGLAAIIFTTEGDMRQAINNLQSTWT---GLGFVNPENV 236
Query: 257 LEVTGVIPNPWIEKLL-----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 311
+V P+P++ + L + D ++K ++++ + Y+A + +V + +
Sbjct: 237 FKVCDQ-PHPFLIRALLTACQEGDVDLAMDK-LDEIWAKGYAAVDIVTTLFRVVKTMDRI 294
Query: 312 SDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTAV 355
+ K ++++ + ++ +G + +Q LG ++ + K ++
Sbjct: 295 PEATKLEFIKEIGWTHMKILEGVATVVQ---LGGLIARLCKLSI 335
>gi|363539784|ref|YP_004894673.1| mg622 gene product [Megavirus chiliensis]
gi|350610949|gb|AEQ32393.1| putative replication factor C small subunit [Megavirus chiliensis]
Length = 364
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 118/345 (34%), Positives = 190/345 (55%), Gaps = 36/345 (10%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPW+EKYRP+ + D ++ Q ++++ K + ++ HFLFYGPPGTGKTS ++A ++F
Sbjct: 9 VPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREIFK 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-DGKPCPPFKIVILDEADSMTH 151
+ + R++E NASDDRGI +R+K+ A++ + + DG P +KI+ILDEADSMT
Sbjct: 69 EHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADSMTD 128
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALR +E+ + +TRFC ICNY+S I + SRC+ FK L + M+ +L+ I +
Sbjct: 129 EAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDGCMIDKLKEISTK 188
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQ-------------------SCARLK------ 246
ES+ + L T+++ S GDMR+AI LQ S A LK
Sbjct: 189 ESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYLYSFKKRKCVDFDKMSIAELKSLSFNN 248
Query: 247 ---GGEGIVN-EDVLEVTGVIPNPWIEKLLKVDSFQV-----LEKYIEDLILEAYSATQL 297
E I+ ED+ ++ I K++ DS Q L + +I Y +
Sbjct: 249 LTQSQENIIEPEDIYKLAASITMKQSLKIIH-DSIQCKNIIELSDLCKQIITIGYPIDTI 307
Query: 298 FDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
Q + ++ ++ L+ QK+ I+ + ++++ +EYIQ+L+
Sbjct: 308 LMQLNKAILESNKLNTIQKSKIIINSGDVLLKIKECGNEYIQLLN 352
>gi|402219931|gb|EJU00004.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dacryopinax sp. DJM-731 SS1]
Length = 343
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/345 (37%), Positives = 191/345 (55%), Gaps = 21/345 (6%)
Query: 16 SSSKTSVSTSGKTR--NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
SSSK +GK +PWVEKYRP+ +DDV+ + + LK + PH + G
Sbjct: 3 SSSKGKEVANGKATEPGYEMPWVEKYRPRVLDDVVGNTDTIDRLKVIARDGNCPHIIISG 62
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PG GKT+++ H L GD Y+E +LELNASD+RGI V+R+K+KTFAQ+ +
Sbjct: 63 MPGIGKTTSIHCLAHALLGDAYKEGVLELNASDERGIDVVRNKIKTFAQKKVT------- 115
Query: 134 PCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PP KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC+
Sbjct: 116 -LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAIL 174
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + +L RL ICE E V + + L L+ T+ GDMR+AI +QS G G
Sbjct: 175 RYSKLRDQEVLKRLLEICEAEKVKYNDEGLTALIFTAEGDMRQAINNIQSTW---SGFGF 231
Query: 252 VNEDVLEVTGVIPNP-WIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
VN D + P+P I+ +L K D ++K +++L + YSA + +
Sbjct: 232 VNGDNVFKVCDQPHPVLIQAMLRSCHKGDVQGTMDK-LDELWGQGYSAVDIVVTLFRVTK 290
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
+ + L + K + ++ + R+ +G +Q+ L + + K N
Sbjct: 291 TFNELQEYSKLEYIREIGWTHMRVLEGVGTKMQLAGLVARLCKMN 335
>gi|448825607|ref|YP_007418538.1| putative replication factor C small subunit [Megavirus lba]
gi|444236792|gb|AGD92562.1| putative replication factor C small subunit [Megavirus lba]
Length = 364
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 119/347 (34%), Positives = 193/347 (55%), Gaps = 40/347 (11%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPW+EKYRP+ + D ++ Q ++++ K + ++ HFLFYGPPGTGKTS ++A ++F
Sbjct: 9 VPWIEKYRPRKLKDFVQSQNLINLFKNSTAKGEMTHFLFYGPPGTGKTSVILAMGREIFK 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ-DGKPCPPFKIVILDEADSMTH 151
+ + R++E NASDDRGI +R+K+ A++ + + DG P +KI+ILDEADSMT
Sbjct: 69 EHFTTRVIEFNASDDRGINAVREKITNEAKKFVTQIVKPDGTIIPSYKIIILDEADSMTD 128
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALR +E+ + +TRFC ICNY+S I + SRC+ FK L + M+ +L+ I +
Sbjct: 129 EAQDALRVIIEQYSTTTRFCFICNYISKITDAIKSRCTAIYFKKLDDECMIDKLKEISTK 188
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQ-------------------SCARLK------ 246
ES+ + L T+++ S GDMR+AI LQ S A LK
Sbjct: 189 ESMKLSNEILSTIIDVSNGDMRKAIMLLQNLKYLYSFKKRKCVDFDKMSIAELKSLSFNN 248
Query: 247 ---GGEGIVN-EDVLEVTGVIPNPWIEKLLKV--DSFQV-----LEKYIEDLILEAYSAT 295
E I+ ED+ ++ I +++ LK+ DS Q L + +I Y
Sbjct: 249 LTQSQENIIEPEDIYKLAASIT---MKQSLKIIHDSIQCKNIIELSDLCKQIITIGYPID 305
Query: 296 QLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILD 342
+ Q + ++ ++ L+ QK+ I+ + ++++ +EYIQ+L+
Sbjct: 306 TILMQLNKAILESNKLNTIQKSKIIINSGDVLLKIKECGNEYIQLLN 352
>gi|302916499|ref|XP_003052060.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256732999|gb|EEU46347.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 389
Score = 212 bits (539), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 112/245 (45%), Positives = 153/245 (62%), Gaps = 15/245 (6%)
Query: 13 DAPSSSKT---SVSTSGKTR---NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKC 60
D P+ SK S TS R N PV PWVEKYRP T++DV ++++ + K
Sbjct: 11 DVPAPSKDVLFSADTSKGKRSAANLPVEAEDSLPWVEKYRPNTLEDVSGHHDILATINKF 70
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKT 119
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KT
Sbjct: 71 VDTNRLPHLLLYGPPGTGKTSTILALARRIYGAANMRQMVLELNASDDRGIDVVREQIKT 130
Query: 120 FA--QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
FA +Q S + FK+++LDEAD+MT AQ ALRR MEK T +TRFC+I NY
Sbjct: 131 FASTKQIFSLGGASARAGAGFKLIVLDEADAMTSTAQMALRRIMEKYTVNTRFCIIANYA 190
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
+ L SRC++FRF PL E + + + E+E V +A++ LV+ S GDMRRA+
Sbjct: 191 HKLSPALLSRCTRFRFSPLKEADIRVLVDKVVEEEHVKIGGEAVDALVKLSKGDMRRALN 250
Query: 238 CLQSC 242
LQ+C
Sbjct: 251 VLQAC 255
>gi|340623615|ref|YP_004742068.1| replication factor C small subunit [Methanococcus maripaludis X1]
gi|339903883|gb|AEK19325.1| replication factor C small subunit [Methanococcus maripaludis X1]
Length = 315
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 116/320 (36%), Positives = 180/320 (56%), Gaps = 32/320 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+G+
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKEN 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ ++ S GDMR+AI LQ+ A + + E+++ P +++ K
Sbjct: 177 LNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDE---ITEEIVYKVASKARP--DEIKK 231
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALIL 320
+ + K++E + QL++ D MS +S+K+K ++
Sbjct: 232 MTQLALNGKFVE-------AREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLV 284
Query: 321 EKLAECNARLQDGASEYIQI 340
E + EC+ R+ +G++E IQ+
Sbjct: 285 EAIGECDFRIVEGSNERIQL 304
>gi|50304813|ref|XP_452362.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641495|emb|CAH01213.1| KLLA0C03718p [Kluyveromyces lactis]
Length = 320
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 183/310 (59%), Gaps = 12/310 (3%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + D++ ++ V L+ + ++PH + G PG GKT+++ H+L G
Sbjct: 9 LPWVEKYRPHLLKDIVGNEDTVQRLQTIAADGNMPHMIISGLPGIGKTTSIHCLAHELLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y + +LELNASDDRGI+V+R+++K FAQ+ + P KI+ILDEADSMT
Sbjct: 69 DAYSQAVLELNASDDRGIEVVRNQIKHFAQKKCT------LPAGKHKIIILDEADSMTSG 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L + +L RL I + E
Sbjct: 123 AQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLTDEQVLKRLLEIIKLE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWI-EK 270
V LE ++ T+ GDMR+AI LQS G G+VN E+V ++ P+P I ++
Sbjct: 183 DVQYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGFGLVNGENVFQIVDS-PHPLIVKR 238
Query: 271 LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+L S +Y+++L ++ YSA + ++ + + + + +++++ + R+
Sbjct: 239 MLLSGSLDESLQYLKELWVKGYSAVDIVITCFRVMKNLDEVKETVRLEMIKEIGFTHMRI 298
Query: 331 QDGASEYIQI 340
+G ++Q+
Sbjct: 299 LEGVGTHLQL 308
>gi|403163867|ref|XP_003323926.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375164648|gb|EFP79507.2| replication factor C subunit 4 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 342
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 133/333 (39%), Positives = 185/333 (55%), Gaps = 19/333 (5%)
Query: 16 SSSKTSVSTSG--KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
SSSK + +T K VPWVEKYRP +DD+ + + LK + PH + G
Sbjct: 2 SSSKMNATTVDILKASGAEVPWVEKYRPIILDDITGNTDTIERLKVIARDGNCPHIIISG 61
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PG GKT++++ H L GD Y+E +LELNASD+RGI V+R+K+KTFA +
Sbjct: 62 APGIGKTTSILCLAHALLGDAYKEGVLELNASDERGIDVVRNKIKTFANTKVT------L 115
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
P KI+ILDEADSMT AQ ALRRTME + +TRF L CN S II+P+ SRC+ R+
Sbjct: 116 PAGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNNSSKIIEPIQSRCAILRY 175
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
L + +L RL I E+V L L+ TS GDMR+AI LQS G G V+
Sbjct: 176 GKLKDQEVLKRLVEIATAENVKYAEDGLAALIFTSEGDMRQAINNLQSTV---SGFGFVS 232
Query: 254 -EDVLEVTGVIPNP-WIEKLL----KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS 307
E V +V P+P I+KLL K D L++ +E L + YSA + +V S
Sbjct: 233 AESVFKVCDQ-PHPVVIQKLLSACEKGDLSDALDQ-LEHLWEQGYSALDIVGTLLKVVKS 290
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
+S+ K ++++ + R+ +G S +Q+
Sbjct: 291 MDRMSEFLKLEFIKEIGFTHMRILEGVSTLVQL 323
>gi|294657961|ref|XP_002770526.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
gi|199433083|emb|CAR65867.1| DEHA2E22286p [Debaryomyces hansenii CBS767]
Length = 343
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 124/314 (39%), Positives = 195/314 (62%), Gaps = 22/314 (7%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
VEKYRP ++D+V QQ++V ++K + LPH LFYGPPGTGKTST+IA +++G Y
Sbjct: 26 VEKYRPDSLDEVYGQQDIVDTVRKFVHEGKLPHLLFYGPPGTGKTSTIIALAREIYGPNY 85
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
+ +LELNASDDRGI V+R+++K FA T F++ FK++ILDEAD+MT AQ
Sbjct: 86 KNMVLELNASDDRGIDVVRNQIKNFA-STMQIFSKG------FKLIILDEADAMTSVAQN 138
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
+LRR +EK TK+TRFC++ NY + L SRC++FRF+P+ E+ + RL+ + +E++
Sbjct: 139 SLRRIIEKYTKNTRFCILANYSHKLNPALISRCTRFRFQPIGESAIQERLKNVIIKENLS 198
Query: 216 CDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVL-EVTGVIPNPW-----I 268
+ +A +TL++ S GDMRRA+ LQ+ A L + +++D++ E G P+P +
Sbjct: 199 INEEAEKTLLKLSNGDMRRALNVLQAVKASLDHDDDEIDQDMIYECIGA-PHPQDIETAL 257
Query: 269 EKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
+ +LK D SF +++Y + + + F +I ++ L K + IL+ L+E
Sbjct: 258 DSILKDDWTTSFLTIDQYKRT---KGLALIDMISGFVEI-LNNYQLKPKTRIEILKGLSE 313
Query: 326 CNARLQDGASEYIQ 339
+ G +E IQ
Sbjct: 314 VEYGISKGGNEKIQ 327
>gi|321261085|ref|XP_003195262.1| subunit of heteropentameric Replication factor C (RF-C); Rfc3p
[Cryptococcus gattii WM276]
gi|317461735|gb|ADV23475.1| Subunit of heteropentameric Replication factor C (RF-C), putative;
Rfc3p [Cryptococcus gattii WM276]
Length = 347
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 123/329 (37%), Positives = 188/329 (57%), Gaps = 20/329 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD++ + V LK +LPH + G PG GKT+++ H L G
Sbjct: 26 MPWVEKYRPVLLDDIVGNSDTVERLKVIAEDGNLPHIIISGMPGIGKTTSIHCLAHALLG 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
+ Y+E +LELNASD+RGI V+R+K+K+FAQ+ + PP KI+ILDEADSMT
Sbjct: 86 EAYKEGVLELNASDERGIDVVRNKIKSFAQRKVT--------LPPGRHKIIILDEADSMT 137
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF L CN + II+P+ SRC+ R+ L + +L RL+ IC+
Sbjct: 138 AGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICD 197
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IE 269
ESV + + L L+ T+ GDMR+AI LQS G G V++D + P+P I
Sbjct: 198 MESVKYNDEGLAALIFTAEGDMRQAINNLQSTW---SGFGFVSQDNVFKICDQPHPIVIR 254
Query: 270 KLLKVDSFQVLEK---YIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
+++K + +++ + L + YSA + +V L + K + ++
Sbjct: 255 QMIKDCQYGKIDEALARVNALWDQGYSAVDIVVTVFRVVKGMEELPEYLKLEFIREIGWT 314
Query: 327 NARLQDGASEYIQILDLGSIVIKANKTAV 355
+ R+ +G +Q LG+++ + NK A+
Sbjct: 315 HMRILEGVGTLVQ---LGAMIARLNKFAL 340
>gi|336377010|gb|EGO05345.1| hypothetical protein SERLA73DRAFT_174456 [Serpula lacrymans var.
lacrymans S7.3]
gi|336390053|gb|EGO31196.1| hypothetical protein SERLADRAFT_455984 [Serpula lacrymans var.
lacrymans S7.9]
Length = 343
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 130/326 (39%), Positives = 182/326 (55%), Gaps = 19/326 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ +DDV+ + + LK + PH + G PG GKT+++ HQL G
Sbjct: 22 LPWVEKYRPQNLDDVVGNVDTIERLKVIAKDGNCPHIIISGLPGIGKTTSIHCLAHQLLG 81
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D Y+E +LELNASD+RGI V+R+K+K FAQ+ + PP KIVILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGIDVVRNKIKAFAQKKVT--------LPPARHKIVILDEADSMT 133
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRFCL CN + II+P+ SRC+ R+ L + +L RL ICE
Sbjct: 134 PGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLEICE 193
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTG----VIPN 265
E V + L L+ T GDMR+AI LQS G G V+ E+V +V VI
Sbjct: 194 MEKVEYNDDGLTALIFTCEGDMRQAINNLQST---HSGFGFVSGENVFKVCDQPHPVIVQ 250
Query: 266 PWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
I LK D + K + +L + YSA + +V + L + K ++++
Sbjct: 251 SIIRACLKGDIDGAMGK-LNELWEQGYSAVDIVVTVFRVVKTFDELPEYTKLEYIKEIGF 309
Query: 326 CNARLQDGASEYIQILDLGSIVIKAN 351
+ R+ +G IQ+ L + + K N
Sbjct: 310 THMRILEGVGTIIQLGGLVARLCKLN 335
>gi|453083984|gb|EMF12029.1| replication factor C subunit 3 [Mycosphaerella populorum SO2202]
Length = 399
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 140/385 (36%), Positives = 203/385 (52%), Gaps = 57/385 (14%)
Query: 13 DAPS----------SSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSV 56
DAPS SS T+ N PV PWVEKYRP + DV Q++++
Sbjct: 11 DAPSRASNTDDIVFSSNTNSKGKRSAANLPVEAEDTLPWVEKYRPNALADVSGHQDILAT 70
Query: 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRD 115
+ K + LPH L YGPPGTGKTST++A +++G+ R+ +LELNASDDRGI V+R+
Sbjct: 71 INKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRGIDVVRE 130
Query: 116 KVKTFA---QQTASGFNQ---DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTR 169
++KTF+ Q A F++ D +K++ILDEAD+MT AQ ALRR MEK T +TR
Sbjct: 131 QIKTFSSTKQIFAGSFDKTRRDDSSIAHYKLIILDEADAMTSTAQMALRRIMEKYTANTR 190
Query: 170 FCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSG 229
FC+I NY + L SRC++FRF PL + + + + +E+V + A ++LV S
Sbjct: 191 FCIIANYTHKLSPALLSRCTRFRFSPLKDADIRQLIDRVITEENVNIEPTAADSLVTLSK 250
Query: 230 GDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV---------------IPNPW-IEKLLK 273
GDMRRA+ LQ+C I E V++ + P+P I+ ++K
Sbjct: 251 GDMRRALNVLQACHASSTPLHIPGEPVVDDKAIPRDLITQETIYDCIAAPHPADIQTIMK 310
Query: 274 -----------VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
+++ L+K + L L A T L +Q +++ SA + + +E
Sbjct: 311 TLLNTQNVGSCMNTINTLKKA-KGLAL-ADILTALGEQLNEVEASAQT-----RVTWMEG 363
Query: 323 LAECNARLQDGASEYIQILDLGSIV 347
LA+ RL G SE IQ L IV
Sbjct: 364 LADIEYRLSGGGSESIQTGGLIGIV 388
>gi|119499175|ref|XP_001266345.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
gi|119414509|gb|EAW24448.1| DNA replication factor C subunit Rfc3, putative [Neosartorya
fischeri NRRL 181]
Length = 396
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 143/216 (66%), Gaps = 6/216 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQ-----QTASGFNQDGKPCPPFKIVILDEA 146
+ R+ +LELNASDDRGI V+R+++KTFA A+ G FK++ILDEA
Sbjct: 105 SNNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLASFKLIILDEA 164
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR ME+ T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 165 DAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVD 224
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E + +A+ +LV S GDMRRA+ LQ+C
Sbjct: 225 QVIEKEQIHIQPEAVSSLVRLSKGDMRRALNVLQAC 260
>gi|50290299|ref|XP_447581.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526891|emb|CAG60518.1| unnamed protein product [Candida glabrata]
Length = 322
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 191/327 (58%), Gaps = 24/327 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + D++ +E V L++ + ++PH + G PG GKT+++ H++ G
Sbjct: 10 LPWVEKYRPHLLKDIVGNEETVERLQQIAADGNMPHMIISGLPGIGKTTSIHCLAHEMLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC--PP--FKIVILDEADS 148
+ Y + +LELNASDDRGI V+R+++K FAQ K C PP KI+ILDEADS
Sbjct: 70 ESYSQAVLELNASDDRGIDVVRNQIKHFAQ----------KKCHLPPGKHKIIILDEADS 119
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L RL I
Sbjct: 120 MTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEI 179
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPW 267
+ E V LE ++ T+ GDMR+AI LQS G G+VN E+V ++ P+P
Sbjct: 180 IKAEDVQYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNGENVFKIVDS-PHPL 235
Query: 268 I-EKLLKVDSF-QVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
I +K+L ++ + ++ ++L + YSA + + + L + + +++++
Sbjct: 236 IVKKMLLAETLDESIDCLRQELWAKGYSAVDIVTTCFRVTKNLFQLKESVRLEMIKEIGT 295
Query: 326 CNARLQDGASEYIQILDLGSIVIKANK 352
+ R+ +G S Y+Q L S++ K +K
Sbjct: 296 THMRILEGVSTYLQ---LASMLAKIHK 319
>gi|367013632|ref|XP_003681316.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
gi|359748976|emb|CCE92105.1| hypothetical protein TDEL_0D05210 [Torulaspora delbrueckii]
Length = 322
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 183/317 (57%), Gaps = 19/317 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + D++ +E V L++ ++PH + G PG GKT+++ H+L G
Sbjct: 11 LPWVEKYRPEKLKDIVGNEETVERLEQIAKDGNMPHMIISGLPGIGKTTSVHCLAHELLG 70
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC--PP--FKIVILDEADS 148
Y + +LELNASDDRGI V+R+++K FAQ K C PP KI+ILDEADS
Sbjct: 71 KSYSQAVLELNASDDRGIDVVRNQIKHFAQ----------KKCHLPPGKHKIIILDEADS 120
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L++ +L RL I
Sbjct: 121 MTAGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLMEI 180
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
+ E+V LE ++ T+ GDMR+AI LQS G G+V+ D + P+P I
Sbjct: 181 IKAENVSFTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVSGDNVFKIVDSPHPLI 237
Query: 269 -EKLLKVDSFQVLEKYIE-DLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
+K+L D+ + +++ DL + YSA + + S + + Q+ +++++
Sbjct: 238 VKKMLLADTLEESISHLKNDLWDKGYSAVDIVTTSFRVTKSLYQVKEAQRLEMIKEIGIT 297
Query: 327 NARLQDGASEYIQILDL 343
+ R+ +G Y+Q+ L
Sbjct: 298 HMRILEGVGTYLQLASL 314
>gi|401623752|gb|EJS41840.1| rfc4p [Saccharomyces arboricola H-6]
Length = 323
Score = 211 bits (537), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 117/324 (36%), Positives = 182/324 (56%), Gaps = 17/324 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++ H+L G
Sbjct: 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y + +LELNASDDRGI V+R+++K FAQ+ P KI+ILDEADSMT
Sbjct: 69 SSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH------LPQGKHKIIILDEADSMTAG 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L RL I + E
Sbjct: 123 AQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLEIIKLE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
V LE ++ T+ GDMR+AI LQS G G+VN D + P+P I K +
Sbjct: 183 DVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSPHPLIVKKM 239
Query: 273 KV-----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
+ DS Q+L DL + YS+ + + + + + + + +++++ +
Sbjct: 240 LLATNLDDSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLTQVKESVRLEMIKEIGLTH 296
Query: 328 ARLQDGASEYIQILDLGSIVIKAN 351
R+ +G Y+Q+ + + + K N
Sbjct: 297 MRILEGVGTYLQLASMLAKIHKLN 320
>gi|134083012|emb|CAK42775.1| unnamed protein product [Aspergillus niger]
Length = 342
Score = 211 bits (536), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 156/251 (62%), Gaps = 22/251 (8%)
Query: 13 DAPSSSK---TSVSTSGKTR----NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKK 59
D PS S +S +TSGK + + PV PWVEKYRP T++DV Q++++ + K
Sbjct: 11 DVPSKSAIQFSSDNTSGKAKRVAADLPVEAQDNLPWVEKYRPNTLEDVSGHQDILATINK 70
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++K
Sbjct: 71 FVEANRLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIK 130
Query: 119 TFAQQTASGFNQ-------DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171
TFA T F+ +K++ILDEAD+MT AQ ALRR MEK T +TRFC
Sbjct: 131 TFAS-TKQIFSMAPSSTSTSSSTLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFC 189
Query: 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGD 231
+I NY + L SRC++FRF PL E + + + E+E V +A+++LV S GD
Sbjct: 190 IIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDIVIEKEQVNIQPEAVDSLVRLSKGD 249
Query: 232 MRRAITCLQSC 242
MRRA+ LQ+C
Sbjct: 250 MRRALNVLQAC 260
>gi|295658083|ref|XP_002789604.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
gi|226283157|gb|EEH38723.1| replication factor C subunit 3 [Paracoccidioides sp. 'lutzii' Pb01]
Length = 404
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 100/215 (46%), Positives = 139/215 (64%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +++DV +V+ + + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 MPWVEKYRPNSLEDVSGHHDVIGTINTFIDSNRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEAD 147
R+ +LELNASDDRGI V+RD++KTFA + + + FK++ILDEAD
Sbjct: 105 AKNMRQMVLELNASDDRGIDVVRDQIKTFASTKQIFSVAPVAKSESSLGAFKLIILDEAD 164
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T + RFC+I NY + L SRC++FRF PL E + +
Sbjct: 165 AMTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEKDIRALVNQ 224
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V +A+++LVE S GDMRRA+ LQ+C
Sbjct: 225 VIEKEQVRIQPEAIDSLVELSKGDMRRALNVLQAC 259
>gi|45187984|ref|NP_984207.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|44982768|gb|AAS52031.1| ADR111Wp [Ashbya gossypii ATCC 10895]
gi|374107422|gb|AEY96330.1| FADR111Wp [Ashbya gossypii FDAG1]
Length = 321
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 179/311 (57%), Gaps = 14/311 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK + DV+ E V L++ ++PH + G PG GKT+++ H+L G
Sbjct: 10 LPWVEKYRPKLLKDVVGNDETVERLQQIARDGNMPHMIISGLPGIGKTTSIHCLAHELLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D Y + +LELNASDDRGI V+R+++K FAQ+ + PP KI+ILDEADSMT
Sbjct: 70 DAYSQAVLELNASDDRGIDVVRNQIKQFAQKKCT--------LPPGKHKIIILDEADSMT 121
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L++ +L RL I +
Sbjct: 122 SGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLFEIIK 181
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IE 269
E+V LE L+ T+ GDMR+AI LQS G +VN D + P+P I+
Sbjct: 182 AENVQYTNDGLEALIFTAEGDMRQAINNLQSTV---AGFTLVNGDNVFKIVDSPHPLVIK 238
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
K+L + Y+ +L + YSA + ++ + + + + + +++++ + R
Sbjct: 239 KMLLSATLDESLNYLRELWGKGYSAVDIITTCFRVMKNLTEIKEPLRLEMIKEIGFTHMR 298
Query: 330 LQDGASEYIQI 340
+ +G Y+Q+
Sbjct: 299 ILEGVGTYLQL 309
>gi|389625115|ref|XP_003710211.1| replication factor C subunit 3 [Magnaporthe oryzae 70-15]
gi|351649740|gb|EHA57599.1| replication factor C subunit 3 [Magnaporthe oryzae 70-15]
gi|440464833|gb|ELQ34198.1| replication factor C subunit 3 [Magnaporthe oryzae Y34]
Length = 404
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 129/348 (37%), Positives = 187/348 (53%), Gaps = 44/348 (12%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ DV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 44 LPWVEKYRPVSLADVSGHQDILATVNKFVDANRLPHLLLYGPPGTGKTSTILALARRIYG 103
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQ------------------QTASGFNQDGK 133
D R+ +LELNASDDRGI V+R+++KTFA + S +
Sbjct: 104 ADNVRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSTKPAAASSSASTSNNPSATR 163
Query: 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
P P +K++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY + L SRC++FRF
Sbjct: 164 PTPSYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAHKLSPALLSRCTRFRF 223
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA------RLKG 247
PL E + + + E+E+V A++ LV + GDMRRA+ LQ+C R KG
Sbjct: 224 SPLKEADIRVLVDRVVEEETVNIRPDAVDALVRLARGDMRRALNVLQACHASSTPLREKG 283
Query: 248 G---------EGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDL-ILEAYSATQL 297
+ I E + P I+++L D+ + L + A T+
Sbjct: 284 AAADDKPVVRDTITVETIYNCIAAPPPEAIKEIL--DTLLATSDVVSCLGTINALKTTRG 341
Query: 298 FDQFHDIVMSASS----LSDKQKALI--LEKLAECNARLQDGASEYIQ 339
DI+ + S L K + +I L+ LAE R+ GA E +Q
Sbjct: 342 L-ALADIITALSEELVKLEVKPEVMITWLDGLAEIEHRVAGGAGEAVQ 388
>gi|297620154|ref|YP_003708259.1| Replication factor C [Methanococcus voltae A3]
gi|297379131|gb|ADI37286.1| Replication factor C [Methanococcus voltae A3]
Length = 314
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 177/320 (55%), Gaps = 32/320 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP T+ +++ Q+E++ LK + +PH LF G PG GKT+ + L+GD
Sbjct: 4 PWVEKYRPTTLSEIVGQKEIIERLKNYVEKQSMPHLLFSGSPGIGKTTAALCLAKDLYGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 DWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL +L + YI E E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDVLDYMNYISENEN 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + + ++ S GDMR+++ LQ+ A + +++ED++ P +++ K
Sbjct: 177 ITIEKSGSDAIIYVSEGDMRKSVNVLQTAAAVS---NVIDEDIVYKVSSRARP--DEIKK 231
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALIL 320
+ + +++E + QL+ D M + + +K ++
Sbjct: 232 MIDLAINARFME-------AREQLYKLMIDWGMGGQDILTQVFREVPYLDIEENEKVSLI 284
Query: 321 EKLAECNARLQDGASEYIQI 340
E +AEC+ R+ +G ++ IQ+
Sbjct: 285 EAIAECDFRIVEGGNDRIQL 304
>gi|70985298|ref|XP_748155.1| DNA replication factor C subunit Rfc3 [Aspergillus fumigatus Af293]
gi|66845783|gb|EAL86117.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus Af293]
gi|159125922|gb|EDP51038.1| DNA replication factor C subunit Rfc3, putative [Aspergillus
fumigatus A1163]
Length = 396
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 102/216 (47%), Positives = 143/216 (66%), Gaps = 6/216 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP T+DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 45 LPWVEKYRPNTLDDVSGHQDILATINKFIEANRLPHLLLYGPPGTGKTSTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQ-----QTASGFNQDGKPCPPFKIVILDEA 146
+ R+ +LELNASDDRGI V+R+++KTFA A+ G FK++ILDEA
Sbjct: 105 SNNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMAAPSASSGSSLASFKLIILDEA 164
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR ME+ T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 165 DAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQDIRSLVD 224
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E + +A+ +LV S GDMRRA+ LQ+C
Sbjct: 225 QVIEKEQIRIQPEAVSSLVRLSKGDMRRALNVLQAC 260
>gi|10798790|dbj|BAB16439.1| replication factor C 36kDa subunit [Oryza sativa Japonica Group]
Length = 367
Score = 211 bits (536), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 101/211 (47%), Positives = 137/211 (64%), Gaps = 4/211 (1%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+ PWVEKYRP+++ DV +++V + + + LPH L YGPPGTGKTST++A +L
Sbjct: 36 RAAPWVEKYRPQSLGDVAAHRDIVDTIDRLTNENRLPHLLLYGPPGTGKTSTILAVARKL 95
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G Y ILELNASD+RGI V+R +++ FA + F K+V+LDEAD+MT
Sbjct: 96 YGSQYGNMILELNASDERGIDVVRQQIQDFASARSLSFGAK----QSVKMVLLDEADAMT 151
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRR +EK T+STRF LICN+V+ II L SRC++FRF PL + RL++I +
Sbjct: 152 KDAQFALRRVIEKHTRSTRFALICNHVNKIIPALQSRCTRFRFAPLDGTHVRERLKHIIQ 211
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQS 241
E + D L LV S GDMR+A+ LQS
Sbjct: 212 SEGLDVDDGGLTALVRLSNGDMRKALNILQS 242
>gi|410720678|ref|ZP_11360031.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
gi|410600389|gb|EKQ54917.1| DNA polymerase III, gamma/tau subunit [Methanobacterium sp.
Maddingley MBC34]
Length = 321
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 184/315 (58%), Gaps = 19/315 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+D+V+ Q ++ LK+ ++ A++P+ +F GP G GKT+T IA + G+
Sbjct: 4 PWVEKYRPQTLDEVVGQDHIIQRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+++ LELNASD RGI+ +R +K+F + A G PF+I+ LDE D+MT A
Sbjct: 64 YWKQNFLELNASDARGIETVRKDIKSFCRLKAMG--------APFRIIFLDEVDNMTKDA 115
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF P+ + ++ RL+ I + E+
Sbjct: 116 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPIKGHQVIKRLEVIAKAEN 175
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
V LE++V + GDMRRA+ LQS A + GE + E V EV + +++
Sbjct: 176 VNYAPGTLESIVYFAEGDMRRAVNILQSTASM--GEEVNEETVHEVVSKAKPKDVRRIVN 233
Query: 274 V----DSFQVLEKYIEDLILEAYSA----TQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
+ D + E ++++ S TQ++ + + M +S + ++E + E
Sbjct: 234 LALDGDFMGARDLLREVMVVQGTSGEDMVTQVYQEVSKMAMD-DLISSEDYIKLVEHIGE 292
Query: 326 CNARLQDGASEYIQI 340
+ R+++GA+ IQ+
Sbjct: 293 YDFRIREGANPRIQL 307
>gi|302851817|ref|XP_002957431.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
gi|300257235|gb|EFJ41486.1| DNA replication factor C complex subunit 2 [Volvox carteri f.
nagariensis]
Length = 335
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 125/318 (39%), Positives = 186/318 (58%), Gaps = 26/318 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PW+EKYRP+ I +++ E V+ L+ ++P+ + GPPGTGKT++++ HQL G
Sbjct: 19 LPWLEKYRPQYIHEIVGNMEAVARLQVIAEEGNMPNVILAGPPGTGKTTSILCLAHQLLG 78
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
Y+E +LELNASDDRGI V+R+K+K FAQ+ + PP KIVILDEADSMT
Sbjct: 79 PTYKEAVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGRHKIVILDEADSMT 130
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF L CN S II+P+ SRC+ R+ +++ +L+RL+ +CE
Sbjct: 131 AGAQQALRRTMEIYSNTTRFALACNQSSKIIEPIQSRCAIVRYSRISDVDILSRLRLVCE 190
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP---- 266
+E V + + +E L+ T+ GDMR+A+ LQ A G I E+V +V P+P
Sbjct: 191 KEGVTYNDEGMEALIFTADGDMRQALNNLQ--ATHSGFGFISQENVFKVCDQ-PHPKLVM 247
Query: 267 -WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
IE K D ++ L+ YS+ + +V +A D + L LE L E
Sbjct: 248 SIIENCSKAD-LDAAYAGLKGLVDLGYSSHDIITTVFRVVRNA----DIPEFLKLEYLRE 302
Query: 326 ---CNARLQDGASEYIQI 340
C+ R+ +G + +Q+
Sbjct: 303 VGFCHMRIAEGVNSRLQL 320
>gi|317036017|ref|XP_001397471.2| replication factor C subunit 3 [Aspergillus niger CBS 513.88]
gi|350633381|gb|EHA21746.1| hypothetical protein ASPNIDRAFT_49138 [Aspergillus niger ATCC 1015]
Length = 396
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 113/251 (45%), Positives = 156/251 (62%), Gaps = 22/251 (8%)
Query: 13 DAPSSSK---TSVSTSGKTR----NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKK 59
D PS S +S +TSGK + + PV PWVEKYRP T++DV Q++++ + K
Sbjct: 11 DVPSKSAIQFSSDNTSGKAKRVAADLPVEAQDNLPWVEKYRPNTLEDVSGHQDILATINK 70
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++K
Sbjct: 71 FVEANRLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIK 130
Query: 119 TFAQQTASGFNQ-------DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171
TFA T F+ +K++ILDEAD+MT AQ ALRR MEK T +TRFC
Sbjct: 131 TFAS-TKQIFSMAPSSTSTSSSTLASYKLIILDEADAMTATAQMALRRIMEKYTANTRFC 189
Query: 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGD 231
+I NY + L SRC++FRF PL E + + + E+E V +A+++LV S GD
Sbjct: 190 IIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDIVIEKEQVNIQPEAVDSLVRLSKGD 249
Query: 232 MRRAITCLQSC 242
MRRA+ LQ+C
Sbjct: 250 MRRALNVLQAC 260
>gi|311977891|ref|YP_003987011.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|81999791|sp|Q5UP47.1|RFCS3_MIMIV RecName: Full=Putative replication factor C small subunit L499;
Short=RFC small subunit L499; AltName: Full=Clamp loader
small subunit L499
gi|55417114|gb|AAV50764.1| putative replication factor C [Acanthamoeba polyphaga mimivirus]
gi|308204440|gb|ADO18241.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|339061437|gb|AEJ34741.1| putative replication factor C [Acanthamoeba polyphaga mimivirus]
gi|351737656|gb|AEQ60691.1| putative replication factor C small subunit [Acanthamoeba
castellanii mamavirus]
gi|398257325|gb|EJN40933.1| putative replication factor C [Acanthamoeba polyphaga
lentillevirus]
Length = 344
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 121/305 (39%), Positives = 177/305 (58%), Gaps = 13/305 (4%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRP+ ID +I ++++ LKK + LPH LF+GP G+GKTST+ ++
Sbjct: 15 KQLPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREI 74
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G ILELNAS++RGI+ +R K+K F +S F G FK+VILDE DSMT
Sbjct: 75 YGKYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVR-DIFKLVILDEIDSMT 133
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ LR+T+EK + +TRFCLICN + I L SRC+ FRF PL E M RL IC
Sbjct: 134 VEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICR 193
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG-----VIPN 265
E V + +A+ ++++ S GDMR AI LQ + GG I EDV +++G ++ +
Sbjct: 194 LEGVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIGG-SINTEDVYKISGHCMPEIVTD 252
Query: 266 PW-IEKLLKVDSFQVLEKYIEDLIL----EAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
+ I L + + L+K + D+I + L ++ +IVM S + QK ++
Sbjct: 253 VFDILFSLNKNKTKSLKKSVNDIITIVTENNITIFNLLEELKNIVME-SKFTTSQKIFLI 311
Query: 321 EKLAE 325
+ A+
Sbjct: 312 DNFAK 316
>gi|402080324|gb|EJT75469.1| replication factor C subunit 3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 410
Score = 210 bits (535), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 139/384 (36%), Positives = 199/384 (51%), Gaps = 57/384 (14%)
Query: 13 DAPSSSKT---SVSTSGK--TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCL 61
D P+ SK S T GK N PV PWVEKYRP ++ DV Q++++ + K +
Sbjct: 11 DVPAKSKDVTFSAETKGKRSAANLPVEAEDSLPWVEKYRPVSLADVSGHQDILATINKFV 70
Query: 62 SGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTF 120
LPH L YGPPGTGKTST++A +++G D R+ +LELNASDDRGI V+R+++KTF
Sbjct: 71 DSNRLPHLLLYGPPGTGKTSTILALARRIYGADNMRQMVLELNASDDRGIDVVREQIKTF 130
Query: 121 AQ------------------------QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAA 156
A +A + G +K++ILDEAD+MT+ AQ A
Sbjct: 131 ASTKQIFSMGPRNTAAAAAAAPSSSSSSAPSAARTGSTMALYKLIILDEADAMTNTAQMA 190
Query: 157 LRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMC 216
LRR MEK T +TRFC+I NY + L SRC++FRF PL E + + + ++ESV
Sbjct: 191 LRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEADIRVLVDRVVDEESVNV 250
Query: 217 DFKALETLVETSGGDMRRAITCLQSC-----------ARLKGGEGIVNEDVLEVTGVI-- 263
+A++ LV S GDMRRA+ LQ+C A+ G V DV+ V +
Sbjct: 251 VPEAVDALVRLSRGDMRRALNVLQACHASSTPLRERGAKAPGPGDAVARDVVTVESIYSC 310
Query: 264 ----PNPWIEKLLK--VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 317
P + ++LK + + V++ L+A L D + L K +
Sbjct: 311 IAAPPPDAVAEILKTLLGTADVVQCLGTINALKASRGLALADIITALSEEVVKLEVKPEV 370
Query: 318 LI--LEKLAECNARLQDGASEYIQ 339
+I L+ LA+ R+ GASE +Q
Sbjct: 371 MIRWLDGLAQIEHRVAGGASETVQ 394
>gi|410730707|ref|XP_003980174.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
gi|401780351|emb|CCK73498.1| hypothetical protein NDAI_0G05150 [Naumovozyma dairenensis CBS 421]
Length = 321
Score = 210 bits (535), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 120/314 (38%), Positives = 177/314 (56%), Gaps = 19/314 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + D++ +E + L++ ++PH + G PG GKT+++ H+L G
Sbjct: 10 LPWVEKYRPHVLKDIVGNEETILRLEQIAQDGNMPHMIISGLPGIGKTTSIHCLAHELLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC--PP--FKIVILDEADS 148
D Y +LELNASDDRGI V+R+++K FAQ K C PP KI+ILDEADS
Sbjct: 70 DAYSRAVLELNASDDRGIDVVRNQIKHFAQ----------KKCYLPPGKHKIIILDEADS 119
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L RL I
Sbjct: 120 MTAGAQQALRRTMELFSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEI 179
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
+ E V LE ++ T+ GDMR+AI LQS G G+VN D + P+P I
Sbjct: 180 IKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNGDNVFKIVDSPHPLI 236
Query: 269 EK--LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
+ LL + L +DL + YSA + + + L + ++ +++++
Sbjct: 237 VRRMLLAPTLDEALTYLRDDLWGKGYSAVDIVTTSFRVTKNLFELKENKRLEMIKEIGIT 296
Query: 327 NARLQDGASEYIQI 340
+ R+ +G S Y+Q+
Sbjct: 297 HMRILEGVSTYLQL 310
>gi|345560437|gb|EGX43562.1| hypothetical protein AOL_s00215g298 [Arthrobotrys oligospora ATCC
24927]
Length = 393
Score = 210 bits (534), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 99/220 (45%), Positives = 143/220 (65%), Gaps = 10/220 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+++DDV +++++ + K ++ LPH LFYGPPGTGKTST++A +++
Sbjct: 41 LPWVEKYRPQSLDDVSGHEDILTTINKFIAQNKLPHLLFYGPPGTGKTSTILALARRIYN 100
Query: 93 D----MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC------PPFKIVI 142
R +LELNASDDRGI V+R+++KTFA + +P FK++I
Sbjct: 101 TKSEAALRHHVLELNASDDRGIDVVREQIKTFASTKQIFSSAKLEPSNTTSSIAQFKLII 160
Query: 143 LDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTML 202
LDEAD+MT AQ ALRR MEK T + RFC+I NY + L SRC++FRF PL +
Sbjct: 161 LDEADAMTSTAQNALRRIMEKYTSNVRFCIIANYTHKLNAALLSRCTRFRFSPLPIPALR 220
Query: 203 TRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
R++++ + E+V D A++ L+ S GDMRRA+ LQ+C
Sbjct: 221 RRVEHVIDSENVRIDDTAVDALLHLSRGDMRRALNVLQAC 260
>gi|297842523|ref|XP_002889143.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
gi|297334984|gb|EFH65402.1| hypothetical protein ARALYDRAFT_476911 [Arabidopsis lyrata subsp.
lyrata]
Length = 369
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 139/213 (65%), Gaps = 5/213 (2%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
++K PWVEKYRP+++DDV ++++ + + + LPH L YGPPGTGKTST++A
Sbjct: 35 QSKATPWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVAR 94
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
+L+G YR ILELNASDDRGI V+R +++ FA + + K+V+LDEAD+
Sbjct: 95 KLYGPKYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSS-----VKLVLLDEADA 149
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR +EK TKSTRF LI N+V+ II L SRC++FRF PL + RL+++
Sbjct: 150 MTKDAQFALRRVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDPLHVSQRLKHV 209
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
E E + L LV S GDMR+A+ LQS
Sbjct: 210 IEAEGLGVSDCGLAALVRLSNGDMRKALNILQS 242
>gi|380489807|emb|CCF36452.1| replication factor C [Colletotrichum higginsianum]
Length = 392
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 151/248 (60%), Gaps = 18/248 (7%)
Query: 13 DAPSSSKTSVSTSGK-----TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCL 61
D P S + S+ K N PV PWVEKYRP ++ DV Q++++ + K +
Sbjct: 11 DVPVSKDITFSSDAKQGKRSAANLPVEAEDSLPWVEKYRPVSLADVSGHQDILATINKFV 70
Query: 62 SGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTF 120
LPH L YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTF
Sbjct: 71 DSNRLPHLLLYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGIDVVREQIKTF 130
Query: 121 AQQT------ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
A S + G +K++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I
Sbjct: 131 ASTKQIFTLGPSAKSGGGGSMASYKLIILDEADAMTNTAQMALRRIMEKYTVNTRFCIIA 190
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NY + L SRC++FRF PL E + + + E+E V +A + LV+ S GDMRR
Sbjct: 191 NYSHKLSPALLSRCTRFRFSPLKERDIRVLVDKVVEEEHVKILPEATDALVKLSKGDMRR 250
Query: 235 AITCLQSC 242
A+ LQ+C
Sbjct: 251 ALNVLQAC 258
>gi|213402449|ref|XP_002171997.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
gi|212000044|gb|EEB05704.1| DNA replication factor C complex subunit Rfc4 [Schizosaccharomyces
japonicus yFS275]
Length = 344
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 123/347 (35%), Positives = 193/347 (55%), Gaps = 19/347 (5%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
+ A SS+ T + +PWVEKYRP +DD++ ++ ++ LK ++PH +
Sbjct: 2 QGAGSSASTGYTGQKVATTYELPWVEKYRPVVLDDIVGNEDTIARLKVIARDGNMPHMII 61
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT++++ HQL G YRE +LELNASD+RGI V+R+K+K FAQ+ +
Sbjct: 62 SGMPGIGKTTSVLCLAHQLLGSAYREGVLELNASDERGIDVVRNKIKGFAQKKVN----- 116
Query: 132 GKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
PP KIVILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC+
Sbjct: 117 ---LPPGRHKIVILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCA 173
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
R+ L E + RL IC+ ESV + L+ T+ GDMR+AI LQS + G +
Sbjct: 174 ILRYSRLNEQQIQKRLSEICKAESVSITDDGMAALIMTAEGDMRQAINNLQST--VAGFD 231
Query: 250 GIVNEDVLEVTGVIPNP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
+ +E+V +V P+P I + D + LE+ ++ + +S + +
Sbjct: 232 LVNSENVFKVADQ-PSPVAVLDMIRHCMHGDIDKALER-LKGIWGLGFSPVDIITTMFRV 289
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
V + + + + + +L ++ + + +G Y+Q+ L + + KA+
Sbjct: 290 VKTMNEVPEYSRLEMLREIGSAHMIVLEGVQTYLQLSALIARLAKAH 336
>gi|398390788|ref|XP_003848854.1| replication factor C subunit 4 [Zymoseptoria tritici IPO323]
gi|339468730|gb|EGP83830.1| hypothetical protein MYCGRDRAFT_76271 [Zymoseptoria tritici IPO323]
Length = 351
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/333 (36%), Positives = 184/333 (55%), Gaps = 14/333 (4%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
KDA ++ +T G N +PWVEKYRP +DD++ E + LK ++PH +
Sbjct: 8 KDAETNG-VKANTRGAPANYELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVII 66
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT++++ QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 67 SGMPGIGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT----- 121
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
P KIVILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+
Sbjct: 122 -LPAGRQKIVILDEADSMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAIL 180
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + ++ RL IC+ E V + LV ++ GDMR+AI LQS G G
Sbjct: 181 RYARLTDGQVVKRLYQICQAEKVEYSDDGIAALVFSAEGDMRQAINNLQST---HAGFGF 237
Query: 252 VNEDVLEVTGVIPNPW-IEKLLKVDSFQVLEKYIE---DLILEAYSATQLFDQFHDIVMS 307
VN D + P+P ++ ++K Q ++ ++ +L YS+ + + +
Sbjct: 238 VNGDNVFRVVDSPHPIKVQAMIKNCQEQKIDDALDGLKELWDLGYSSHDIISTMFKVTKT 297
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
SLS+ K + ++ + R+ +G Y+Q+
Sbjct: 298 IPSLSEHTKLEFIREIGFTHMRILEGMQTYLQL 330
>gi|115443244|ref|XP_001218429.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
gi|114188298|gb|EAU29998.1| activator 1 subunit 3 [Aspergillus terreus NIH2624]
Length = 398
Score = 210 bits (534), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/249 (42%), Positives = 150/249 (60%), Gaps = 19/249 (7%)
Query: 13 DAPSSSKTSVST--SGKTRNKP-----------VPWVEKYRPKTIDDVIEQQEVVSVLKK 59
D PS S+ +GK +P +PWVEKYRP T+DDV Q++++ + +
Sbjct: 11 DVPSKGDVQFSSDNAGKKAKRPAADLPVEAQDNLPWVEKYRPNTLDDVSGHQDILATINR 70
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVK 118
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++K
Sbjct: 71 FIEANRLPHLLLYGPPGTGKTSTILALARKIYGSKNMRQMVLELNASDDRGIDVVREQIK 130
Query: 119 TFAQ-----QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
TFA FK++ILDEAD+MT AQ ALRR ME+ T +TRFC+I
Sbjct: 131 TFASTKQIFSMGPQSGSGSSSLASFKLIILDEADAMTSTAQMALRRIMERYTANTRFCII 190
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
NY + L SRC++FRF PL E + + + + E+E + +A+++LV S GDMR
Sbjct: 191 ANYTHKLSPALLSRCTRFRFSPLKEPDIRSLVDLVVEKEQINIQPEAVDSLVTLSKGDMR 250
Query: 234 RAITCLQSC 242
RA+ LQ+C
Sbjct: 251 RALNVLQAC 259
>gi|451999620|gb|EMD92082.1| hypothetical protein COCHEDRAFT_1193657 [Cochliobolus
heterostrophus C5]
Length = 392
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 144/214 (67%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV +++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 42 LPWVEKYRPASLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG 101
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDG-KPCPPFKIVILDEADS 148
+ R+ +LELNASDDRGI+V+R+++KTF+ +Q S + G FK+++LDEAD+
Sbjct: 102 NKNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFSAAPKAGDSSLATFKLIVLDEADA 161
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + + +
Sbjct: 162 MTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRHLVDKV 221
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E+E V A ++LV S GDMRRA+ LQ+C
Sbjct: 222 IEEEKVNITQDATDSLVTLSKGDMRRALNVLQAC 255
>gi|307191665|gb|EFN75139.1| Replication factor C subunit 5 [Harpegnathos saltator]
Length = 329
Score = 209 bits (533), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 130/335 (38%), Positives = 185/335 (55%), Gaps = 22/335 (6%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
TS + +PWVEKYRPK +D++I + ++ + K + LPH L YGPPGTGKTST+
Sbjct: 2 TSNDEQLVNLPWVEKYRPKNLDELISHETIIKTINKFIDENQLPHLLLYGPPGTGKTSTI 61
Query: 84 IAACHQLF--GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141
+A +L+ +LELNASDDRGI ++R ++ +FA T + + FK++
Sbjct: 62 LACARKLYTPAQFNSMVVLELNASDDRGIGIVRGQILSFAS-TGTMYKS------AFKLI 114
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEAD+MT AQ ALRR +EK T + RFC+ICNY+S II L SRC++FRF PLA +
Sbjct: 115 ILDEADAMTIDAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTRFRFLPLAAEQI 174
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ RL ++ E E++ + L+ SGGDMR+ I+ LQS GIVNE V
Sbjct: 175 IPRLNHVIEAENLNVTEDGKQALMTLSGGDMRKVISVLQSTW---FAYGIVNEG--NVYN 229
Query: 262 VIPNPWIEKLLKVDSFQVLEKY------IEDLILEAYSATQ-LFDQFHDIVMSASSLSDK 314
+ +P + + ++ + E Y I+ L L A Q + + H V+ D
Sbjct: 230 CVGHPLPSDIRNIVNWLLNEPYDTCYKNIQQLKLNKGLALQDILTEIHLCVIKI-DFPDS 288
Query: 315 QKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+L KLAE RL G + IQ+ L S K
Sbjct: 289 IFIDLLCKLAEIEKRLASGCRDAIQVNSLISAFYK 323
>gi|336467972|gb|EGO56135.1| hypothetical protein NEUTE1DRAFT_130196 [Neurospora tetrasperma
FGSC 2508]
gi|350289788|gb|EGZ71013.1| P-loop containing nucleoside triphosphate hydrolase protein
[Neurospora tetrasperma FGSC 2509]
Length = 389
Score = 209 bits (532), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/214 (48%), Positives = 142/214 (66%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ DV QQ++++ + K + LPH LFYGPPGTGKTST++A Q++G
Sbjct: 43 LPWVEKYRPVSLSDVSGQQDILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQIYG 102
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
R+ +LELNASDDRGI V+R+++KTFA Q + G + FK++ILDEAD+
Sbjct: 103 TANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDEADA 162
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 163 MTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDKV 222
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
++E+V A + LV S GDMRRA+ LQ+C
Sbjct: 223 IDEENVKILPDATDALVRLSKGDMRRALNVLQAC 256
>gi|449300715|gb|EMC96727.1| hypothetical protein BAUCODRAFT_34119 [Baudoinia compniacensis UAMH
10762]
Length = 350
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 185/333 (55%), Gaps = 15/333 (4%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
KDA K T+G N +PWVEKYRP +DD++ E + LK ++PH +
Sbjct: 8 KDAGVGVKAH--TNGAPTNFELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHLII 65
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT++++ QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 66 SGMPGIGKTTSILCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT----- 120
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
P KIVILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+
Sbjct: 121 -LPAGRHKIVILDEADSMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAIL 179
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + ++ RL IC+ E+V + LV ++ GDMR+AI LQS G G
Sbjct: 180 RYSRLTDAQVVKRLYQICKAENVEYSDDGIAALVFSAEGDMRQAINNLQSTF---AGFGF 236
Query: 252 VNEDVLEVTGVIPNPW-IEKLLKVDSFQVLEKY---IEDLILEAYSATQLFDQFHDIVMS 307
V+ D + P+P ++ +LK Q +++ +++L YS+ + + +
Sbjct: 237 VSGDNVFRVVDSPHPVKVQAMLKSCQEQKVDEALDSLQELWGLGYSSHDIITTMFRVTKT 296
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
SLS+ K + ++ + R+ +G Y+Q+
Sbjct: 297 LPSLSEHSKLEFIREIGFTHMRILEGVQTYLQL 329
>gi|294496335|ref|YP_003542828.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
gi|292667334|gb|ADE37183.1| replication factor C small subunit [Methanohalophilus mahii DSM
5219]
Length = 318
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/314 (36%), Positives = 181/314 (57%), Gaps = 22/314 (7%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP ++DV+ Q + + L+ + +LPH LF GPPG GKT+T ++ +LFGD
Sbjct: 6 WIEKYRPYRLEDVVGQSDAIERLRSYIKTNNLPHLLFSGPPGVGKTATAVSIARELFGDD 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE ELNASD+RGI V+R K+K FA+ + G FKI+ LDEAD++T AQ
Sbjct: 66 WRENFTELNASDERGIDVVRTKIKNFAKTSPIG-------GADFKIIFLDEADALTPDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ T + RF L CNY S II+P+ SRC+ +RF+PL+++ + R ++I E+E +
Sbjct: 119 SALRRTMERYTNNCRFILSCNYSSKIIEPIQSRCAVYRFRPLSDDAIGKRCRHIAEKEGL 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
+E + + GDMR+AI +Q+ + I + + +T I+ LL+
Sbjct: 179 DIADDGIEAIKYVAEGDMRKAINAVQAASMFD--TSIHADSIYRITATAHPEEIKALLES 236
Query: 275 ---DSFQVLEKYIEDLILEAYSA-----TQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
+F K ++DL++ + Q++ D+ + A L I++ L E
Sbjct: 237 ALGGNFISSRKKLDDLMVSRGLSGEDVVGQVYRSLFDLDIPARKL-----VSIVDVLGEI 291
Query: 327 NARLQDGASEYIQI 340
+ R+ +GA E IQ+
Sbjct: 292 DFRITEGADERIQL 305
>gi|158292645|ref|XP_314028.3| AGAP005144-PA [Anopheles gambiae str. PEST]
gi|157017089|gb|EAA09454.3| AGAP005144-PA [Anopheles gambiae str. PEST]
Length = 327
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 184/319 (57%), Gaps = 20/319 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL-- 90
+PWVEKYRP ++D+I +E++ + K + LPH LFYGPPGTGKTST++A QL
Sbjct: 9 LPWVEKYRPAKLNDLISHEEIIGTINKFIKEEQLPHLLFYGPPGTGKTSTILACARQLYK 68
Query: 91 ---FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
FG M +LELNASDDRGI ++R ++ FA T + F +K++ILDEAD
Sbjct: 69 PQSFGSM----VLELNASDDRGINIVRGQILDFAS-TRTIFKGG------YKLIILDEAD 117
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT+ AQ ALRR +EK T++ RFC+ICNY+S II + SRC++FRF PL+ + +L RL++
Sbjct: 118 AMTNDAQNALRRIIEKYTENVRFCIICNYLSKIIPAIQSRCTRFRFAPLSPDQILPRLEH 177
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC--ARLKGGEGIVNEDVLEVTGVIPN 265
+ E E + + L+ +GGDMR+ + LQS A K E V V N
Sbjct: 178 VVEAEGIDVTDDGKKALMTLAGGDMRKVLNVLQSTWMAYKKVTEVNVYNCVGHPLKEDIN 237
Query: 266 PWIEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDIVMSASSLSDKQKALILEKLA 324
I LL +SF+ + I+ L + A + + + H +V++ + + + +L LA
Sbjct: 238 NIIFWLLNEESFKACYEKIQQLKTQKGLALEDILTEIH-LVVNRLEIPPRVSSQLLINLA 296
Query: 325 ECNARLQDGASEYIQILDL 343
RL DG E QI L
Sbjct: 297 SIEERLADGCVEKPQITAL 315
>gi|85110311|ref|XP_963397.1| activator 1 subunit 3 [Neurospora crassa OR74A]
gi|28881264|emb|CAD70523.1| related to replication factor C chain Rfc3 [Neurospora crassa]
gi|28925076|gb|EAA34161.1| activator 1 subunit 3 [Neurospora crassa OR74A]
Length = 389
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/214 (48%), Positives = 142/214 (66%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ DV QQ++++ + K + LPH LFYGPPGTGKTST++A Q++G
Sbjct: 43 LPWVEKYRPVSLSDVSGQQDILATINKFVDTNRLPHLLFYGPPGTGKTSTVLALARQIYG 102
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
R+ +LELNASDDRGI V+R+++KTFA Q + G + FK++ILDEAD+
Sbjct: 103 AANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSLGSSSSRSGLAGFKLIILDEADA 162
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 163 MTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDKV 222
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
++E+V A + LV S GDMRRA+ LQ+C
Sbjct: 223 IDEENVKILPDATDALVRLSKGDMRRALNVLQAC 256
>gi|336258765|ref|XP_003344190.1| hypothetical protein SMAC_08123 [Sordaria macrospora k-hell]
gi|380095124|emb|CCC07626.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 389
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/214 (47%), Positives = 140/214 (65%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ DV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 43 LPWVEKYRPVSLADVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYG 102
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
R+ +LELNASDDRGI V+R+++KTFA Q G + FK++ILDEAD+
Sbjct: 103 TANMRQMVLELNASDDRGIDVVREQIKTFASTKQIFTLGSSASRSGLAGFKLIILDEADA 162
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 163 MTSTAQMALRRIMEKYTANTRFCIIANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDKV 222
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E+E+V A + LV+ S GDMRRA+ LQ+C
Sbjct: 223 IEEENVQIMPDATDALVKLSKGDMRRALNVLQAC 256
>gi|311977902|ref|YP_003987022.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|82050828|sp|Q5UQ72.1|RFCS4_MIMIV RecName: Full=Putative replication factor C small subunit L510;
Short=RFC small subunit L510; AltName: Full=Clamp loader
small subunit L510
gi|55417124|gb|AAV50774.1| putative replication factor C subunit [Acanthamoeba polyphaga
mimivirus]
gi|308204876|gb|ADO18677.1| putative replication factor C small subunit [Acanthamoeba polyphaga
mimivirus]
gi|339061447|gb|AEJ34751.1| putative replication factor C subunit [Acanthamoeba polyphaga
mimivirus]
gi|351737669|gb|AEQ60704.1| putative replication factor C small subunit [Acanthamoeba
castellanii mamavirus]
gi|398257335|gb|EJN40943.1| putative replication factor C subunit [Acanthamoeba polyphaga
lentillevirus]
Length = 363
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 141/213 (66%), Gaps = 1/213 (0%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
++ VPW+EKYRPK ++D+ + Q ++ + K ++ HFLFYGPPGTGKTS ++A +
Sbjct: 4 DESVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGRE 63
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN-QDGKPCPPFKIVILDEADS 148
+F + ++ R++E NASDDRGI +R+K+ A++ + +DG P +KI+ILDEADS
Sbjct: 64 IFKEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADS 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALR +E+ + +TRFC ICNY++ I + SRCS FK L++ M+ +L I
Sbjct: 124 MTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+ES+ L T+++ S GDMR+AI LQ+
Sbjct: 184 SLKESMELPKNILHTIIDVSNGDMRKAIMLLQN 216
>gi|345484012|ref|XP_001599543.2| PREDICTED: replication factor C subunit 5-like [Nasonia
vitripennis]
Length = 285
Score = 209 bits (532), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 115/273 (42%), Positives = 166/273 (60%), Gaps = 24/273 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD+I +E++ + K + LPH L YGPPGTGKTST++A +L+
Sbjct: 12 LPWVEKYRPSKLDDLISHEEIIQTINKFIDENQLPHLLLYGPPGTGKTSTILACAKKLYT 71
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
+ +LELNASDDRGI ++R ++ +FA T + + +K++ILDEAD+MT+
Sbjct: 72 PQQFNSMVLELNASDDRGIGIVRGQILSFAS-TGTMYRSG------YKLIILDEADAMTN 124
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR +EK T + RFC+ICNY+S II L SRC+KFRF PLA +L RL+++ +
Sbjct: 125 DAQNALRRIIEKYTDNVRFCIICNYLSKIIPALQSRCTKFRFGPLAPEQILPRLEHVITE 184
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E+V + L+ SGGDMR+ I LQS G VNE+ V + +P
Sbjct: 185 ENVTVTEDGKKALMTLSGGDMRKVINVLQSTWL---AFGCVNEE--NVYTCVGHP----- 234
Query: 272 LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
L VD ++ I L+ E+Y A +++ D+
Sbjct: 235 LPVD----IKNIINWLLNESYEAA--YNKVQDL 261
>gi|330922359|ref|XP_003299806.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
gi|311326367|gb|EFQ92093.1| hypothetical protein PTT_10878 [Pyrenophora teres f. teres 0-1]
Length = 393
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 139/214 (64%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV +++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 43 LPWVEKYRPNSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG 102
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
+ R+ +LELNASDDRGI V+R+++KTF+ Q AS FK++ILDEAD+
Sbjct: 103 NKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFASAPKTGDSSLATFKLIILDEADA 162
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + + +
Sbjct: 163 MTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKV 222
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E E V A +LV S GDMRRA+ LQ+C
Sbjct: 223 IEDEKVNITQDATGSLVTLSKGDMRRALNVLQAC 256
>gi|14325757|dbj|BAB60660.1| replication factor C subunit [Thermoplasma volcanium GSS1]
Length = 330
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 185/327 (56%), Gaps = 32/327 (9%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK++ ++ + E + LK + +LPH LF G GTGKTST IA +LFG+
Sbjct: 17 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGES 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTHA 152
++E +E+NAS++ GI VIR+K+K A+ +P P FKI+ LDEAD +T
Sbjct: 77 WKENFIEMNASNENGIDVIRNKIKDIARI---------RPSNPLGFKILFLDEADQLTAE 127
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRRTME +++TRF CNY S II P+ SR RF+P+ + + +L I + E
Sbjct: 128 AQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNE 187
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
D +++E +VE SGGDMR+AI LQ+ GE I + + E+ G + KL+
Sbjct: 188 GFTIDDESMEAMVEVSGGDMRKAINVLQAV--YTSGE-ISPKKIYEIIGYASPESVNKLI 244
Query: 273 KV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
++ Q+++K +I + S + H IV AS + KQK I++ LA+
Sbjct: 245 SRAINGLFDEARQIVDKM---MIEDGLSGIDIVKSVHSIV-RASVVPPKQKIEIIKALAD 300
Query: 326 CNARLQDGASEYIQ-------ILDLGS 345
R+ +G+++ IQ I D+GS
Sbjct: 301 AEFRIVEGSNDRIQLDALIARIADIGS 327
>gi|13542322|ref|NP_112010.1| replication factor C small subunit [Thermoplasma volcanium GSS1]
gi|73920753|sp|Q977Z9.2|RFCS_THEVO RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 185/327 (56%), Gaps = 32/327 (9%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK++ ++ + E + LK + +LPH LF G GTGKTST IA +LFG+
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGES 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTHA 152
++E +E+NAS++ GI VIR+K+K A+ +P P FKI+ LDEAD +T
Sbjct: 65 WKENFIEMNASNENGIDVIRNKIKDIARI---------RPSNPLGFKILFLDEADQLTAE 115
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRRTME +++TRF CNY S II P+ SR RF+P+ + + +L I + E
Sbjct: 116 AQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNE 175
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
D +++E +VE SGGDMR+AI LQ+ GE I + + E+ G + KL+
Sbjct: 176 GFTIDDESMEAMVEVSGGDMRKAINVLQAV--YTSGE-ISPKKIYEIIGYASPESVNKLI 232
Query: 273 KV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
++ Q+++K +I + S + H IV AS + KQK I++ LA+
Sbjct: 233 SRAINGLFDEARQIVDKM---MIEDGLSGIDIVKSVHSIV-RASVVPPKQKIEIIKALAD 288
Query: 326 CNARLQDGASEYIQ-------ILDLGS 345
R+ +G+++ IQ I D+GS
Sbjct: 289 AEFRIVEGSNDRIQLDALIARIADIGS 315
>gi|405121785|gb|AFR96553.1| activator 1 40 kDa subunit [Cryptococcus neoformans var. grubii
H99]
Length = 347
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 192/349 (55%), Gaps = 29/349 (8%)
Query: 16 SSSKTSVSTSGK---TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
SS+ +S + K +PWVEKYRP +DD++ + + LK ++PH +
Sbjct: 6 SSNNKGISATAKHIDAEGYEMPWVEKYRPVLLDDIVGNSDTIDRLKVIAEDGNVPHIIIS 65
Query: 73 GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
G PG GKT+++ H L G+ Y+E +LELNASD+RGI V+R+K+K+FAQ+ +
Sbjct: 66 GMPGIGKTTSIHCLAHALLGEAYKEGVLELNASDERGIDVVRNKIKSFAQRKVT------ 119
Query: 133 KPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PP KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC+
Sbjct: 120 --LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAI 177
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
R+ L + +L RL+ IC+ ES+ + + L L+ T+ GDMR+AI LQS G G
Sbjct: 178 LRYSKLNDAEVLKRLKEICDMESIKYNDEGLAALIFTAEGDMRQAINNLQSTW---SGFG 234
Query: 251 IVNEDVLEVTGVIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHD 303
VN+D + P+P + + + K+D + L + I L + YSA +
Sbjct: 235 FVNQDNVFKICDQPHPIVIRQMIKDCQHGKID--EALAR-INALWDQGYSAVDIVVTVFR 291
Query: 304 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+V L + K + ++ + R+ +G +Q LG+++ + K
Sbjct: 292 VVKGMEELPEYLKLEFIREIGWTHMRVLEGVGTLVQ---LGAMIARLTK 337
>gi|398392868|ref|XP_003849893.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
gi|339469771|gb|EGP84869.1| hypothetical protein MYCGRDRAFT_110326 [Zymoseptoria tritici
IPO323]
Length = 460
Score = 209 bits (531), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/248 (43%), Positives = 152/248 (61%), Gaps = 12/248 (4%)
Query: 7 TGKLGKDAPSSSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKC 60
T K D SS T+ N P+ PWVEKYRP ++DDV Q++++ + K
Sbjct: 15 TSKPSDDITFSSSTTAKGKRSAANLPIEAEDTLPWVEKYRPSSLDDVHGHQDILATINKF 74
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKT 119
+ LPH L YGPPGTGKTST++A +++G+ R+ +LELNASDDRGI V+R+++KT
Sbjct: 75 VDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKNMRQMVLELNASDDRGIDVVREQIKT 134
Query: 120 FA---QQTASGFNQDGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
F+ Q A F++ + +K++ILDEAD+MT AQ ALRR MEK T +TRFC+I
Sbjct: 135 FSSTKQIFAGSFDKSAQQSTIANYKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIA 194
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NY + L SRC++FRF PL E + + + +E V A ++LV S GDMRR
Sbjct: 195 NYTHKLSPALLSRCTRFRFSPLKEVDIRQLVDKVVREEDVNIAPDATDSLVTLSKGDMRR 254
Query: 235 AITCLQSC 242
A+ LQ+C
Sbjct: 255 ALNVLQAC 262
>gi|297837097|ref|XP_002886430.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
gi|297332271|gb|EFH62689.1| hypothetical protein ARALYDRAFT_475032 [Arabidopsis lyrata subsp.
lyrata]
Length = 334
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 193/333 (57%), Gaps = 30/333 (9%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP + D++ ++ VS L+ ++P+ + GPPGTGKT++++A H+L G
Sbjct: 17 PWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 76
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTH 151
Y+E +LELNASDDRGI V+R+K+K FAQ+ + PP K+VILDEADSMT
Sbjct: 77 NYKEAVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGRHKVVILDEADSMTS 128
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRT+E + STRF L CN S II+P+ SRC+ RF L++ +L RL + E
Sbjct: 129 GAQQALRRTIEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQQILGRLLVVVEA 188
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW-IEK 270
E+V + LE ++ T+ GDMR+A+ LQ A G + E+V +V P+P ++
Sbjct: 189 ENVPYVPEGLEAIIFTADGDMRQALNNLQ--ATFSGFRFVNQENVFKVCDQ-PHPLHVKN 245
Query: 271 LLKVDSFQVLEKYIEDLILEAYSATQLFDQFH---DIVMSASSL---SDKQKALILEKLA 324
+++ VLE +D + QL+D + DI+ + + D + L LE +
Sbjct: 246 IVR----NVLESKFDD---ACHGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMK 298
Query: 325 E---CNARLQDGASEYIQILDLGSIVIKANKTA 354
E + R+ DG Y+Q+ L + + A +TA
Sbjct: 299 ETGFAHMRICDGVGSYLQLCGLLAKLSIARETA 331
>gi|371945111|gb|AEX62932.1| putative replication factor C small subunit [Moumouvirus Monve]
Length = 346
Score = 208 bits (530), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 175/324 (54%), Gaps = 22/324 (6%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S +T + + K + K +PW EKYRP+ ID +I +++ LK + LPH LF+GP
Sbjct: 2 SYYETVIDKTEKGKEKNIPWTEKYRPRDIDQIISHKQITRSLKNFIKSKTLPHLLFFGPS 61
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G+GKTST+ +L+G ILELNAS++RGI+ +R K+K F S F
Sbjct: 62 GSGKTSTIKCCAAKLYGSYLNCMILELNASNERGIETVRTKIKNFVSNKNSIF------L 115
Query: 136 PP-----FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PP FK+VILDE DSMT AQ LR+T+EK + +TRFCLICN + I L SRC+
Sbjct: 116 PPELRNIFKLVILDEIDSMTVEAQGMLRQTIEKNSSTTRFCLICNDIDKINLALQSRCAL 175
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
FRF PL N M RL+ IC+ E+V ++ ++ S GDMR AI LQ L +
Sbjct: 176 FRFSPLNNNEMHKRLKDICDIENVKYSTGVIDAVINISKGDMRSAINTLQH-VNLTVNDL 234
Query: 251 IVNEDVLEVTGVIPNPWIEKLLKV---------DSFQVLEKYIEDLILEAYSATQLFDQF 301
I DV +++G I ++ + D + +EK I ++ + L +
Sbjct: 235 ITVNDVYKISGHCMPELILEIFNILLQLSKKKKDLDKYVEKIINIVVENNITIFNLLSEL 294
Query: 302 HDIVMSASSLSDKQKALILEKLAE 325
+IV+ S L D QK +++ A+
Sbjct: 295 KNIVLD-SDLLDDQKIFLIDNFAK 317
>gi|322698624|gb|EFY90393.1| activator 1 subunit 3 [Metarhizium acridum CQMa 102]
Length = 921
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 114/245 (46%), Positives = 161/245 (65%), Gaps = 15/245 (6%)
Query: 13 DAPSSSK----TSVSTSGK--TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKC 60
DAP++SK +S +T GK T N PV PW+EKYRP T+DDV Q++++ + K
Sbjct: 11 DAPATSKDVIFSSEATKGKRSTANLPVEAEDSLPWIEKYRPATLDDVSGHQDILATINKF 70
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKT 119
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KT
Sbjct: 71 VDSNRLPHLLLYGPPGTGKTSTILALARRIYGAANMRQMVLELNASDDRGIDVVREQIKT 130
Query: 120 FA--QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
FA +Q + FK++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY
Sbjct: 131 FASTKQIFTMGASAKSSIAGFKLIILDEADAMTNTAQMALRRIMEKYTVNTRFCIIANYS 190
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAIT 237
+ L SRC++FRF PL E + ++ + E+E+V +A++ L++ S GDMRRA+
Sbjct: 191 HKLSPALLSRCTRFRFSPLKEGDIRVLVEKVVEEENVQIGGEAVDALIKLSKGDMRRALN 250
Query: 238 CLQSC 242
LQ+C
Sbjct: 251 VLQAC 255
>gi|242770327|ref|XP_002341956.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
gi|218725152|gb|EED24569.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
stipitatus ATCC 10500]
Length = 399
Score = 208 bits (529), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/219 (46%), Positives = 143/219 (65%), Gaps = 13/219 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+V Q++++ + + + LPH L YGPPGTGKT+T++A +++G
Sbjct: 45 LPWVEKYRPNSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIYG 104
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQT--------ASGFNQDGKPCPPFKIVIL 143
R+ +LELNASDDRGI V+R+++KTFA A+ N G FK++IL
Sbjct: 105 IKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAAKENSLGA----FKLIIL 160
Query: 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLT 203
DEAD+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 161 DEADAMTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEADIRS 220
Query: 204 RLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ + E E+V +A E+LV S GDMRRA+ LQ+C
Sbjct: 221 LVDKVIEAENVRIQPEATESLVRLSKGDMRRALNVLQAC 259
>gi|261200183|ref|XP_002626492.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239593564|gb|EEQ76145.1| activator 1 subunit 3 [Ajellomyces dermatitidis SLH14081]
gi|239607557|gb|EEQ84544.1| replication factor C [Ajellomyces dermatitidis ER-3]
gi|327357386|gb|EGE86243.1| replication factor C [Ajellomyces dermatitidis ATCC 18188]
Length = 404
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 152/249 (61%), Gaps = 19/249 (7%)
Query: 13 DAPSSSKT------SVSTSGK--TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLK 58
DAP S T + + GK T + P+ PWVEKYRP T++DV Q+++ +
Sbjct: 11 DAPPSKNTVQFSSDNTNARGKRITADLPIEAEDNLPWVEKYRPNTLEDVSGHQDIIGTIN 70
Query: 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKV 117
+ + LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+RD++
Sbjct: 71 RFIDTNRLPHLLLYGPPGTGKTSTILALARRIYGVKNMRQMVLELNASDDRGIDVVRDQI 130
Query: 118 KTFAQQ----TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
KTFA + + + FK++ILDEAD+MT AQ ALRR MEK T + RFC+I
Sbjct: 131 KTFASTKQIFSMAPAAKAESTLGAFKLIILDEADAMTAVAQMALRRIMEKYTANARFCII 190
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
NY + L SRC++FRF PL E + + + E E V +A+++LV+ S GDMR
Sbjct: 191 ANYSHKLSPALLSRCTRFRFSPLKEKDIRVLVDQVIETEQVRIQPEAIDSLVKLSKGDMR 250
Query: 234 RAITCLQSC 242
RA+ LQ+C
Sbjct: 251 RALNVLQAC 259
>gi|58269654|ref|XP_571983.1| Activator 1 40 kDa subunit [Cryptococcus neoformans var. neoformans
JEC21]
gi|134114003|ref|XP_774249.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256884|gb|EAL19602.1| hypothetical protein CNBG2300 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57228219|gb|AAW44676.1| Activator 1 40 kDa subunit, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 347
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 125/349 (35%), Positives = 194/349 (55%), Gaps = 29/349 (8%)
Query: 16 SSSKTSVSTSGKTRNKP---VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFY 72
SS+ +S + K + +PWVEKYRP +DD++ + V LK ++PH +
Sbjct: 6 SSNNKLISATAKHTDAEGYEMPWVEKYRPVLLDDIVGNSDTVDRLKVIAEDGNVPHIIIS 65
Query: 73 GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
G PG GKT+++ H L G+ Y+E +LELNASD+RGI V+R+K+K+FAQ+ +
Sbjct: 66 GMPGIGKTTSIHCLAHALLGEAYKEGVLELNASDERGIDVVRNKIKSFAQRKVT------ 119
Query: 133 KPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190
PP KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC+
Sbjct: 120 --LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAI 177
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
R+ L + +L RL+ IC+ ES+ + + L L+ T+ GDMR+AI LQS G G
Sbjct: 178 LRYSKLNDAEVLKRLKEICDMESIKHNDEGLAALIFTAEGDMRQAINNLQSTW---SGFG 234
Query: 251 IVNEDVLEVTGVIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHD 303
VN+D + P+P + + + K+D + L + + L + YSA +
Sbjct: 235 FVNQDNVFKICDQPHPIVIRQMIKDCQHGKID--EALAR-VNALWDQGYSAVDIVVTVFR 291
Query: 304 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352
+V L + K + ++ + R+ +G +Q LG+++ + +K
Sbjct: 292 VVKGMEELPEYLKLEFIREIGWTHMRVLEGVGTLVQ---LGAMIARLSK 337
>gi|253745639|gb|EET01440.1| Replication factor C, sub 2 [Giardia intestinalis ATCC 50581]
Length = 351
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 104/257 (40%), Positives = 156/257 (60%), Gaps = 18/257 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PW EK+RP +D ++ Q V K+C+ ++PH L YGP GTGKT+ + A H+ FG
Sbjct: 4 PWTEKHRPLALDRIVHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLVHAMMHEFFGP 63
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
+R R+ E NAS DRGI+++R+++K+ A+ + +D K PCP F++++LDEAD++
Sbjct: 64 RFWRARVNEFNASTDRGIKIVRERIKSIARTVIAVAPEDVKALYPCPDFQVIVLDEADAL 123
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T +QAALRR +E +++TRFC++CNY S II P+ SRC++F F PL + ++ RL IC
Sbjct: 124 TRESQAALRRIIEDYSETTRFCILCNYPSQIIAPIVSRCARFAFSPLPQTLIIDRLTAIC 183
Query: 210 -----------EQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--KGGEGIVNEDV 256
EQ S++ AL + S GDMR AIT LQ+ + GE + E V
Sbjct: 184 YAEMHQLRNANEQLSLLAS-DALSEVAILSQGDMRAAITLLQTTVQFCQSMGEELSPEHV 242
Query: 257 LEVTGVIPNPWIEKLLK 273
+ G IP+ I L++
Sbjct: 243 RLLAGKIPDELIASLIE 259
>gi|290986773|ref|XP_002676098.1| predicted protein [Naegleria gruberi]
gi|284089698|gb|EFC43354.1| predicted protein [Naegleria gruberi]
Length = 337
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 126/330 (38%), Positives = 189/330 (57%), Gaps = 21/330 (6%)
Query: 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82
S+SG PWVE+YRP +DD++ +E V L+ ++P+ + GPPGTGKT++
Sbjct: 7 SSSGVPTEMDRPWVERYRPIDMDDIVGNEEAVMRLRVIAEEGNMPNLILSGPPGTGKTTS 66
Query: 83 MIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FK 139
++ L G ++Y+E +LELNASD+R + V+R+K+K FAQ+ + PP K
Sbjct: 67 IMCLARSLLGKEVYKEAVLELNASDERTLDVVRNKIKQFAQKKVN--------LPPNRHK 118
Query: 140 IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAEN 199
IVILDEADSMT AAQ A+RR ME + +TRF L CN S II+P+ SRC+ R+K L +
Sbjct: 119 IVILDEADSMTSAAQQAMRRIMEIYSSTTRFALACNDSSKIIEPIQSRCALVRYKRLTDA 178
Query: 200 TMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLE 258
+LTRL ICE E V LE+++ TS GDMR AI LQ+ + G GIVN +V +
Sbjct: 179 ELLTRLIVICELEHVQKTEDGLESILYTSDGDMRNAINSLQATYQ---GFGIVNATNVFK 235
Query: 259 VTGVIPNPWIEKLLKVDSFQ----VLEKYIEDLILEAYSATQLFDQFHDIVMS-ASSLSD 313
V P+P + + Q +K + L+ E YS+ + +V S A + +
Sbjct: 236 VCDQ-PHPVAIQTIIGSCIQGDLMSSQKELTKLMGEGYSSQDVISTLSKVVRSGAVQMPE 294
Query: 314 KQKALILEKLAECNARLQDGASEYIQILDL 343
+ ++++ +C+ R+ DG +Q+ L
Sbjct: 295 YAQLQFIKEIGDCHLRISDGVDTPLQLTAL 324
>gi|255712733|ref|XP_002552649.1| KLTH0C09900p [Lachancea thermotolerans]
gi|238934028|emb|CAR22211.1| KLTH0C09900p [Lachancea thermotolerans CBS 6340]
Length = 322
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 180/312 (57%), Gaps = 16/312 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + D++ +E ++ L++ ++PH + G PG GKT+++ H+L G
Sbjct: 10 LPWVEKYRPHLLKDIVGNEETITRLQQIAQDGNMPHLIISGLPGIGKTTSVSCLAHELLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
+ Y + +LELNASDDRGI V+R+++K FAQ+ S PP KIVILDEADSMT
Sbjct: 70 NAYSQAVLELNASDDRGIDVVRNQIKQFAQKKCS--------LPPGRHKIVILDEADSMT 121
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L ++ +L RL + +
Sbjct: 122 AGAQQALRRTMEIYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLQDDQVLRRLLEVIQ 181
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWI- 268
E+V LE ++ T+ GDMR+A+ LQS G G+VN E+V ++ P+P I
Sbjct: 182 AENVQYTNDGLEAIIFTAEGDMRQALNNLQSTV---AGYGLVNGENVFKIVDS-PHPLIV 237
Query: 269 EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
+++L S ++L + YSA + + + + + + ++ ++ +
Sbjct: 238 KRMLLAPSLDESLALFKELWNKGYSAVDIVTTCFRVTKNLDEIKEAVRLEMIREIGFAHM 297
Query: 329 RLQDGASEYIQI 340
R+ +G Y+Q+
Sbjct: 298 RILEGVGTYLQL 309
>gi|169626367|ref|XP_001806584.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
gi|111055048|gb|EAT76168.1| hypothetical protein SNOG_16470 [Phaeosphaeria nodorum SN15]
Length = 393
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/214 (47%), Positives = 141/214 (65%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV +++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 43 LPWVEKYRPTSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG 102
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPC-PPFKIVILDEADS 148
+ R+ +LELNASDDRGI V+R+++KTF+ +Q S + G FK++ILDEAD+
Sbjct: 103 NKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDSALATFKLIILDEADA 162
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + + +
Sbjct: 163 MTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKV 222
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E E V A +LV S GDMRRA+ LQ+C
Sbjct: 223 IEDEKVNITQDAASSLVTLSKGDMRRALNVLQAC 256
>gi|310831184|ref|YP_003969827.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
gi|309386368|gb|ADO67228.1| putative replication factor C subunit [Cafeteria roenbergensis
virus BV-PW1]
Length = 314
Score = 208 bits (529), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 112/326 (34%), Positives = 187/326 (57%), Gaps = 22/326 (6%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N+ W EKYRPK ++++I Q E + V+K + +LPH +FYGPPGTGKTST++A C++
Sbjct: 2 NQLTLWNEKYRPKKLNEIIHQNETILVIKNLIDNHNLPHLIFYGPPGTGKTSTILAVCNE 61
Query: 90 LFGDMYR-ERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148
+F D + R E NAS+DRGI+ IR+K+K + Q + P KI+ILDE D+
Sbjct: 62 IFPDEIKYNRCFEFNASNDRGIKFIREKIKKISNQKIKNYPN----TPHIKIIILDEVDT 117
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
+T +Q ALRR ME + +TRFCLICNY + +I+P+ SRC++FRFKP+ M +L I
Sbjct: 118 LTTDSQYALRRIMENSSSNTRFCLICNYPNKLIEPIISRCAQFRFKPIPTKIMEEKLTDI 177
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWI 268
+QE + ++E S GD+R +I+ LQ + NE + ++ G+I +
Sbjct: 178 LKQEKIKNKKDITNLIIENSYGDLRLSISYLQRYYK-------YNESLNKIYGIIGTKEL 230
Query: 269 EKLLKVDSFQV-----LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 323
+++ + ++ ++++I+ A+ L + ++S ++ D K ++E L
Sbjct: 231 LSFIQLYNNEIKFWDKIKEFIQKKYHLAFQIKTLLE-----LVSKLNIDDIIKINLIEDL 285
Query: 324 AECNARLQDGASEYIQILDLGSIVIK 349
+E + + +G + I LG ++K
Sbjct: 286 SEMDYYIINGVNNTILWNFLGVSLLK 311
>gi|346325998|gb|EGX95594.1| activator 1 subunit 3 [Cordyceps militaris CM01]
Length = 420
Score = 207 bits (528), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 110/250 (44%), Positives = 157/250 (62%), Gaps = 22/250 (8%)
Query: 14 APSSSKTSV----STSGK--TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCL 61
AP+ + ++ ++ GK T N PV PW+EKYRP ++DDV Q++++ + K +
Sbjct: 13 APAQNNAALFSADASKGKRSTANLPVEAEDTLPWIEKYRPVSLDDVEGHQDILATINKFV 72
Query: 62 SGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTF 120
LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTF
Sbjct: 73 DSNRLPHLLLYGPPGTGKTSTILALARRIYGAAQARQMVLELNASDDRGIDVVREQIKTF 132
Query: 121 AQQTASGFNQDGKPCPP--------FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
A T FN G +K++ILDEAD+MT+ AQ ALRR MEK T +TRFC+
Sbjct: 133 AS-TKQIFNMGGAAAAAGRSSAMAGYKLIILDEADAMTNTAQMALRRIMEKYTANTRFCI 191
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
I NY + L SRC++FRF PL E + + + ++E V +A++ LV+ S GDM
Sbjct: 192 IANYAHKLSPALLSRCTRFRFSPLKEADIRQLVVKVVDEEGVRIGAEAVDALVKLSKGDM 251
Query: 233 RRAITCLQSC 242
RRA+ LQ+C
Sbjct: 252 RRALNVLQAC 261
>gi|66802182|ref|XP_629875.1| replication factor C subunit [Dictyostelium discoideum AX4]
gi|74851260|sp|Q54E21.1|RFC2_DICDI RecName: Full=Probable replication factor C subunit 2; AltName:
Full=Activator 1 subunit 2
gi|60463272|gb|EAL61464.1| replication factor C subunit [Dictyostelium discoideum AX4]
Length = 338
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 181/318 (56%), Gaps = 15/318 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP I D++ +E VS L+ +LP+ + GPPGTGKTS+++ L G
Sbjct: 20 LPWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLG 79
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y+E + ELNASDDR + V+RDK+K+FA + + P KI+ILDE DSMT
Sbjct: 80 ANYKEAVYELNASDDRTLDVVRDKIKSFAMKKVT------LPAGRHKIIILDEVDSMTSG 133
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR ME + +TRF CN + II+P+ SRC+ RF L+++ +LTRL+ + + E
Sbjct: 134 AQQALRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIE 193
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEK- 270
V L ++ T+ GDMR+A+ LQ+ G G++N E+V +V P+P I K
Sbjct: 194 KVPYTDDGLAAIIFTAEGDMRQALNNLQAT---HSGFGLINAENVTKVCDQ-PHPLIIKQ 249
Query: 271 ---LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
L F+ +++ L + YS+ + I S++++ + QK L+++ CN
Sbjct: 250 IIALCAKSDFKEAYPFLKKLWDDGYSSIDIISALFSITKSSNNIPEYQKLEFLKEIGFCN 309
Query: 328 ARLQDGASEYIQILDLGS 345
R G + +Q+ L S
Sbjct: 310 LRATTGVNTLVQLTGLLS 327
>gi|255537345|ref|XP_002509739.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
gi|223549638|gb|EEF51126.1| replication factor C / DNA polymerase III gamma-tau subunit,
putative [Ricinus communis]
Length = 333
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 124/325 (38%), Positives = 186/325 (57%), Gaps = 26/325 (8%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
+N VPWVEKYRP I D++ ++ VS L+ ++P+ + GPPGTGKT++++A H
Sbjct: 11 QNYDVPWVEKYRPSKICDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAH 70
Query: 89 QLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEA 146
+L G Y+E +LELNASDDRGI V+R+K+K FAQ+ + PP K+VILDEA
Sbjct: 71 ELLGPNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGRHKVVILDEA 122
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
DSMT AQ ALRRTME + STRF L CN S II+P+ SRC+ RF L++ +L RL
Sbjct: 123 DSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCALVRFSRLSDQEILGRLI 182
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
+ + E V + LE ++ T+ GDMR+A+ LQ A G + E+V +V P+P
Sbjct: 183 IVVQAEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFRFVNQENVFKVCDQ-PHP 239
Query: 267 W-IEKLLKVDSFQVLEKYIED-------LILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318
++ +++ V+E +D L YS T + I+ + +++ K
Sbjct: 240 LHVKNMVR----HVMEGKYDDACSGLKQLYDLGYSPTDIITTLFRIIKN-YDMAEYLKLE 294
Query: 319 ILEKLAECNARLQDGASEYIQILDL 343
+++ + R+ DG Y+Q+ L
Sbjct: 295 FMKETGFAHMRICDGVGSYLQLCGL 319
>gi|23271821|gb|AAH23674.1| Rfc5 protein, partial [Mus musculus]
Length = 333
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 127/315 (40%), Positives = 177/315 (56%), Gaps = 29/315 (9%)
Query: 41 PKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERI 99
P+T+ D+I Q+++S ++K +S LPH L YGPPGTGKTST++A QL+ D + +
Sbjct: 21 PQTLADLISHQDILSTIQKFISEDRLPHLLLYGPPGTGKTSTILACAKQLYKDKEFGSMV 80
Query: 100 LELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRR 159
LELNASDDRGI ++R + +FA T + F + FK+VILDEAD+MT AQ ALRR
Sbjct: 81 LELNASDDRGIDIVRGPILSFAS-TRTIFKKG------FKLVILDEADAMTQDAQNALRR 133
Query: 160 TMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFK 219
+EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+++ ++E+V
Sbjct: 134 VIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISED 193
Query: 220 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV 279
++ LV S GDMRRA+ LQS G + E V TG +P LK D +
Sbjct: 194 GMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP-----LKTDIANI 243
Query: 280 LEKYIEDLILEAYSATQLFDQ-----FHDIVMSASSLSDK------QKALILEKLAECNA 328
L+ + AY HDI+ + + +L K+A+
Sbjct: 244 LDWMLNQDFTTAYKNIMELKTLKGLALHDILTEVHLFVHRVDFPSSVRIHLLTKMADIEY 303
Query: 329 RLQDGASEYIQILDL 343
RL G SE IQ+ L
Sbjct: 304 RLSVGTSEKIQLSSL 318
>gi|408383246|ref|ZP_11180783.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
gi|407814028|gb|EKF84666.1| replication factor C small subunit [Methanobacterium formicicum DSM
3637]
Length = 321
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 184/315 (58%), Gaps = 19/315 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+D+V+ Q ++ LK+ ++ A++P+ +F GP G GKT+T IA + G+
Sbjct: 4 PWVEKYRPQTLDEVVGQDHIIHRLKQYINEANMPNLMFTGPAGVGKTTTAIALAKAMLGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+++ LELNASD RGI+ +R +K+F + A G PF+I+ LDE D+MT A
Sbjct: 64 YWKQNFLELNASDARGIETVRKDIKSFCRLKAVG--------SPFRIIFLDEVDNMTKDA 115
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF P+ + ++ RL+ I + E+
Sbjct: 116 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFAPIKGHQVIERLEIIAKAEN 175
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
V LE++V + GDMRRA+ LQS A + GE I + V +V + +++
Sbjct: 176 VNYAPGTLESIVYFAEGDMRRAVNILQSTASM--GEEITEDIVHDVVSKAKPKDVRRIVN 233
Query: 274 V----DSFQVLEKYIEDLILEAYSA----TQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
+ D + E ++++ S TQ++ + + M +S + ++E + E
Sbjct: 234 LALDGDFMGARDLLREVMVVQGTSGEDMVTQVYQEVSRMAMD-DLISSEDYIKLVEHIGE 292
Query: 326 CNARLQDGASEYIQI 340
+ R+++GA+ IQ+
Sbjct: 293 YDFRIREGANPRIQL 307
>gi|189189278|ref|XP_001930978.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972584|gb|EDU40083.1| replication factor C subunit 3 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 393
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 100/214 (46%), Positives = 139/214 (64%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DDV +++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 43 LPWVEKYRPNSLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG 102
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
+ R+ +LELNASDDRGI V+R+++KTF+ Q A+ FK++ILDEAD+
Sbjct: 103 NKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAAAPRAGDSSLATFKLIILDEADA 162
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + + +
Sbjct: 163 MTATAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKV 222
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E E V A +LV S GDMRRA+ LQ+C
Sbjct: 223 IEDEKVNITQDATGSLVTLSKGDMRRALNVLQAC 256
>gi|410077369|ref|XP_003956266.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
gi|372462850|emb|CCF57131.1| hypothetical protein KAFR_0C01380 [Kazachstania africana CBS 2517]
Length = 321
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 116/322 (36%), Positives = 181/322 (56%), Gaps = 14/322 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ + D++ +E + LK+ ++PH + G PG GKT+++ H+L G
Sbjct: 10 LPWVEKYRPQLLKDIVGNEETIERLKQIAQDGNMPHMIISGLPGIGKTTSVHCLAHELLG 69
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y + +LELNASDDRGI VIR+++K FAQ+ + P KI+ILDEADSMT
Sbjct: 70 SHYSQAVLELNASDDRGIDVIRNQIKHFAQKKLN------LPVGKHKIIILDEADSMTAG 123
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L++ +L RL + E E
Sbjct: 124 AQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEQVLKRLLEVIELE 183
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK-- 270
V LE ++ T+ GDMR+AI LQS G G+VN D + P+P I +
Sbjct: 184 KVEYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNGDNVFKIVDSPHPLIVRKM 240
Query: 271 LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
LL + + +L + YS+ + + + + + ++ +++++ + R+
Sbjct: 241 LLSTTLDESMNILRNELWNKGYSSVDIVTTCFRVTKTLPQVKEAKRLEMIKEIGFTHMRI 300
Query: 331 QDGASEYIQILDLGSIVIKANK 352
+G Y+Q L S++ K +K
Sbjct: 301 LEGVGTYLQ---LASMLAKIHK 319
>gi|449460473|ref|XP_004147970.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
gi|449494241|ref|XP_004159490.1| PREDICTED: replication factor C subunit 2-like [Cucumis sativus]
Length = 331
Score = 207 bits (528), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 121/324 (37%), Positives = 183/324 (56%), Gaps = 26/324 (8%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP + D++ ++ VS L+ ++P+ + GPPGTGKT++++A H+
Sbjct: 10 NYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHE 69
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEAD 147
L G Y+E +LELNASDDRGI V+R+K+K FAQ+ + PP K+VILDEAD
Sbjct: 70 LLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGRHKVVILDEAD 121
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L + +L RL
Sbjct: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 181
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW 267
+ + E V + LE ++ T+ GDMR+A+ LQ+ G VN+D + P+P
Sbjct: 182 VIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT---HSGFRFVNQDNVFKVCDQPHPL 238
Query: 268 -IEKLLKVDSFQVLEKYIED-------LILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
++ +++ VLE +D L YS T + I+ + +++ K
Sbjct: 239 HVKNVVR----NVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKN-YDMAEYLKLEF 293
Query: 320 LEKLAECNARLQDGASEYIQILDL 343
+++ + R+ DG Y+Q+ L
Sbjct: 294 MKETGFAHMRICDGVGSYLQLCGL 317
>gi|16082630|ref|NP_394950.1| replication factor C small subunit [Thermoplasma acidophilum DSM
1728]
gi|73920752|sp|Q9HI47.2|RFCS_THEAC RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
Length = 318
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 180/312 (57%), Gaps = 19/312 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK++ ++ + E + LK + ++PH LF G GTGKTST IA +LFGD
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDS 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTHA 152
++E ++E+NAS++ GI VIR+K+K A+ KP P FKI+ LDEAD +T
Sbjct: 65 WKENMVEMNASNENGIDVIRNKIKDIARI---------KPSNPLGFKILFLDEADQLTAE 115
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRRTME +++TRF CNY S II P+ SR RF+P+ + + +LQ I + E
Sbjct: 116 AQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNE 175
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
D +++ LVE S GDMR+AI LQ+ GE I + + E+ G I+K++
Sbjct: 176 GFQIDEESMHALVEVSAGDMRKAINVLQAV--YTSGE-ISPKKIYEIIGYASPEKIQKMI 232
Query: 273 K--VDSFQVLEKYIED--LILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
++ + I D LI + S + H V S S +S KQK I++ LA+
Sbjct: 233 SRAINGLFDEAREIVDGMLIYDGLSGIDIVRSLHSYVRS-SMISPKQKIEIIKALADAEF 291
Query: 329 RLQDGASEYIQI 340
R+ +G+++ IQ+
Sbjct: 292 RIVEGSNDRIQL 303
>gi|453087153|gb|EMF15194.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 349
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 117/331 (35%), Positives = 185/331 (55%), Gaps = 17/331 (5%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+S+ + +G N +PWVEKYRP +DD++ E + LK ++PH + G P
Sbjct: 8 ASNGVKANANGTPSNYELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVIISGMP 67
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G GKT++++ QL G+ Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 68 GIGKTTSVLCLARQLLGEAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT--------L 119
Query: 136 PPF--KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PP KIVILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+ R+
Sbjct: 120 PPGRQKIVILDEADSMTSGAQQALRRTMEIYSGTTRFAFACNQSNKIIEPLQSRCAILRY 179
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
L + ++ R+ IC+ E+V L LV ++ GDMR+AI LQS G G VN
Sbjct: 180 ARLTDAQVVKRINQICKAENVQFSDDGLAALVFSAEGDMRQAINNLQST---HAGFGFVN 236
Query: 254 EDVLEVTGVIPNPW-IEKLLKVDSFQVLEKYIE---DLILEAYSATQLFDQFHDIVMSAS 309
D + P+P ++ ++K + +++ ++ +L YS+ + + +
Sbjct: 237 SDNVFRVVDSPHPIKVQAMIKSCHERNVDEALDALKELWGLGYSSHDIISSMFKVTKTIP 296
Query: 310 SLSDKQKALILEKLAECNARLQDGASEYIQI 340
SL++ K + ++ + R+ +G Y+Q+
Sbjct: 297 SLAEHTKLEFIREIGFTHMRILEGVQTYLQL 327
>gi|358368166|dbj|GAA84783.1| activator 1 subunit 3 [Aspergillus kawachii IFO 4308]
Length = 402
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 111/253 (43%), Positives = 156/253 (61%), Gaps = 24/253 (9%)
Query: 13 DAPSSSK---TSVSTSGKTR----NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKK 59
D PS + +S +T+GK + + PV PWVEKYRP T++DV Q++++ + K
Sbjct: 11 DVPSKNAIQFSSDNTNGKAKRVAADLPVEAQDNLPWVEKYRPNTLEDVSGHQDILATINK 70
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVK 118
+ LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++K
Sbjct: 71 FVEANRLPHLLLYGPPGTGKTSTILALARRIYGAKNMRQMVLELNASDDRGIDVVREQIK 130
Query: 119 TFAQQTASGFNQ---------DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTR 169
TFA T F+ +K++ILDEAD+MT AQ ALRR MEK T +TR
Sbjct: 131 TFAS-TKQIFSMAPSSSTSTSTSSNLASYKLIILDEADAMTATAQMALRRIMEKYTANTR 189
Query: 170 FCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSG 229
FC+I NY + L SRC++FRF PL E + + + E+E V +A+++LV S
Sbjct: 190 FCIIANYTHKLSPALLSRCTRFRFSPLKEADIRVLVDLVIEKEEVNIQPEAVDSLVRLSK 249
Query: 230 GDMRRAITCLQSC 242
GDMRRA+ LQ+C
Sbjct: 250 GDMRRALNVLQAC 262
>gi|302698263|ref|XP_003038810.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
gi|300112507|gb|EFJ03908.1| hypothetical protein SCHCODRAFT_84256 [Schizophyllum commune H4-8]
Length = 340
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 130/343 (37%), Positives = 185/343 (53%), Gaps = 19/343 (5%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
SSS + +T +PWVEKYRP+ +DDV+ + + LK + PH + G P
Sbjct: 2 SSSSKAKATGPADAPYELPWVEKYRPQVLDDVVGNADTIDRLKVIARDGNCPHIIISGMP 61
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G GKT+++ HQL G Y+E +LELNASD+RGI V+R+K+K FAQ+ +
Sbjct: 62 GIGKTTSIHCLAHQLLGPAYKEGVLELNASDERGIDVVRNKIKNFAQKKVT--------L 113
Query: 136 PP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PP KI+ILDEADSMT AQ ALRRTME + +TRFCL CN + II+P+ SRC+ R+
Sbjct: 114 PPGRHKIIILDEADSMTAGAQQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRY 173
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
L + +L RL ICE E V + L L+ T+ GDMR+AI LQS G G V+
Sbjct: 174 GKLKDQEILKRLLEICEAEKVEYNDDGLTALIFTAEGDMRQAINNLQSTW---SGFGFVS 230
Query: 254 EDVLEVTGVIPNP-----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA 308
D + P+P I LK D + K E L + YSA + +V +
Sbjct: 231 GDNVFKVCDQPHPITIQTIIRCCLKGDIDGAMVKLTE-LWDQGYSAVDIVVTLFRVVKNF 289
Query: 309 SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
+ + K ++++ + R+ +G IQ+ L + + K N
Sbjct: 290 DEIPEYTKLEYIKEIGFTHMRILEGVGTIIQLSGLLARLCKMN 332
>gi|10640840|emb|CAC12618.1| probable replication factor C, 40 KD subunit [Thermoplasma
acidophilum]
Length = 330
Score = 207 bits (526), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 180/312 (57%), Gaps = 19/312 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK++ ++ + E + LK + ++PH LF G GTGKTST IA +LFGD
Sbjct: 17 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDS 76
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTHA 152
++E ++E+NAS++ GI VIR+K+K A+ KP P FKI+ LDEAD +T
Sbjct: 77 WKENMVEMNASNENGIDVIRNKIKDIARI---------KPSNPLGFKILFLDEADQLTAE 127
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRRTME +++TRF CNY S II P+ SR RF+P+ + + +LQ I + E
Sbjct: 128 AQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNE 187
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
D +++ LVE S GDMR+AI LQ+ GE I + + E+ G I+K++
Sbjct: 188 GFQIDEESMHALVEVSAGDMRKAINVLQAV--YTSGE-ISPKKIYEIIGYASPEKIQKMI 244
Query: 273 K--VDSFQVLEKYIED--LILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
++ + I D LI + S + H V S S +S KQK I++ LA+
Sbjct: 245 SRAINGLFDEAREIVDGMLIYDGLSGIDIVRSLHSYVRS-SMISPKQKIEIIKALADAEF 303
Query: 329 RLQDGASEYIQI 340
R+ +G+++ IQ+
Sbjct: 304 RIVEGSNDRIQL 315
>gi|388504120|gb|AFK40126.1| unknown [Medicago truncatula]
Length = 333
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 129/329 (39%), Positives = 185/329 (56%), Gaps = 30/329 (9%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
T + VPWVEKYRP + D++ ++ VS L+ ++P+ + GPPGTGKT++++A
Sbjct: 9 NTASYDVPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILAL 68
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILD 144
H+L G YRE +LELNASDDRGI V+R+K+K FAQ+ + PP K+VILD
Sbjct: 69 AHELLGPNYREAVLELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGRHKVVILD 120
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME + STRF L CN S II+P+ SRC+ RF L++ +L R
Sbjct: 121 EADSMTSGAQQALRRTMEIYSNSTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGR 180
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L + + E V + LE ++ T+ GDMR+ + LQ A G + + +V +V P
Sbjct: 181 LMVVVQAEKVPYVPEGLEAIIFTADGDMRQGLNNLQ--ATFSGFQFVNQANVFKVCDQ-P 237
Query: 265 NPWIEKLLKVDSFQVLEKYIEDLILEAYSA-TQLFDQFH---DIVMSASSL---SDKQKA 317
+P K ++ IE EA S QL+D + DI+ + + D +
Sbjct: 238 HPLHVK-------NMVRNVIEGNFDEACSGLKQLYDLGYSPTDIITTLFRIIKSYDMAEY 290
Query: 318 LILEKLAE---CNARLQDGASEYIQILDL 343
L LE + E + R+ DG Y+Q+ L
Sbjct: 291 LKLEFMKETGFAHMRICDGVGSYLQMCGL 319
>gi|308198335|ref|XP_001386998.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
gi|149388978|gb|EAZ62975.2| DNA replication factor C [Scheffersomyces stipitis CBS 6054]
Length = 325
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 121/323 (37%), Positives = 188/323 (58%), Gaps = 27/323 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+ +DDV+ +E + LK ++PH + G PG GKT+++ ++L G
Sbjct: 11 LPWVEKYRPRRLDDVVGNEETIERLKLIAKDGNMPHMIISGLPGIGKTTSIHCLAYELLG 70
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSM 149
D Y++ LELNASDDRGI V+R+++K FAQ PP KI+ILDEADSM
Sbjct: 71 DDYYQQATLELNASDDRGIDVVRNRIKQFAQTKIK--------LPPGRHKIIILDEADSM 122
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ ALRRTME + +TRF CN S II+PL SRC+ R+ LA++ +LTRL +
Sbjct: 123 TPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLTRLLEVS 182
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPNPW- 267
E+V + + L+ L+ T+ GDMR+AI LQS G G VN+ +V ++ P+P
Sbjct: 183 AAENVKFNSEGLQALIFTAEGDMRQAINNLQSTV---AGFGFVNDINVFKIVDQ-PHPLV 238
Query: 268 IEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
I+++L +D L ++DL + YSA + + + + ++++ ++
Sbjct: 239 IQRILIHCTKDRDIDRALAL---LDDLWAKGYSAIDIVTSTFKVSKTLPGIGEQKRLELI 295
Query: 321 EKLAECNARLQDGASEYIQILDL 343
+++ + R+ +G S Y+Q+ L
Sbjct: 296 KEVGFVHMRVLEGVSSYLQLCGL 318
>gi|403411420|emb|CCL98120.1| predicted protein [Fibroporia radiculosa]
Length = 361
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 132/363 (36%), Positives = 190/363 (52%), Gaps = 36/363 (9%)
Query: 14 APSSSKTSVSTSGKTRNKP--VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFL- 70
A SS+K +G N P +PWVEKYRP +DD++ E + LK + PH +
Sbjct: 2 ASSSAKGKAPANGNATNLPYELPWVEKYRPHALDDIVGNTETIERLKVIAKDGNCPHIII 61
Query: 71 --------FY--------GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIR 114
F+ G PG GKT+++ HQL GD Y+E +LELNASD+RGI V+R
Sbjct: 62 SVGPPKHPFFARLMARPKGMPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVR 121
Query: 115 DKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
+K+K FAQ+ + PP KIVILDEADSMT AQ ALRRTME +TRF L
Sbjct: 122 NKIKAFAQKKVT--------LPPGRHKIVILDEADSMTPGAQQALRRTMEIYANTTRFAL 173
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
CN + II+P+ SRC+ R+ L + +L RL ICE E V + L L+ TS GDM
Sbjct: 174 ACNMSNKIIEPIQSRCAILRYAKLRDTEILKRLLEICEMEKVQYNDDGLTALIFTSEGDM 233
Query: 233 RRAITCLQSCARLKGGEGIVNEDVLEVTG----VIPNPWIEKLLKVDSFQVLEKYIEDLI 288
R+AI LQS G + ++V +V +I I LK + ++K + +L
Sbjct: 234 RQAINNLQSTN--SGFSFVSGDNVFKVCDQPHPIIVQSIIRACLKSNIDDAMDK-LNELW 290
Query: 289 LEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVI 348
+ YSA + +V + + + K ++++ + R+ +G IQ+ L + +
Sbjct: 291 DQGYSAVDIIVTIFRVVKTFDEMPEYTKLEYIKEIGWTHMRILEGVGTLIQLGGLMARLC 350
Query: 349 KAN 351
K N
Sbjct: 351 KMN 353
>gi|444320537|ref|XP_004180925.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
gi|387513968|emb|CCH61406.1| hypothetical protein TBLA_0E03520 [Tetrapisispora blattae CBS 6284]
Length = 324
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 178/315 (56%), Gaps = 21/315 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK + D++ E + L++ ++PH + G PG GKT+++ H+L G
Sbjct: 12 LPWVEKYRPKVLKDIVGNNETIDRLQQIALDGNMPHMIISGMPGIGKTTSIHCLAHELLG 71
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D Y++ +LELNASDDRGI+V+R+++K FAQ+ PP KI+ILDEADSMT
Sbjct: 72 DSYKQAVLELNASDDRGIEVVRNQIKHFAQKKCH--------LPPGKNKIIILDEADSMT 123
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L++ +L RL I E
Sbjct: 124 SGAQQALRRTMELYSNTTRFAFACNQSNKIIEPLQSRCAILRYNKLSDEEVLKRLLQIIE 183
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
E+V LE ++ T+ GDMR+AI LQS G +VN D + P+P I K
Sbjct: 184 LENVQYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHTLVNGDNVFKIVDSPHPLIVK 240
Query: 271 LLKV-----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
+ + +S +L + D + YS+ + ++ + + + I++++
Sbjct: 241 KMLLSKELDESIDILRNELWD---KGYSSIDIVTTCFRVMKILYQIKESLRLEIIKEIGF 297
Query: 326 CNARLQDGASEYIQI 340
+ R+ +G Y+Q+
Sbjct: 298 THMRILEGVGTYLQL 312
>gi|212541869|ref|XP_002151089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
gi|210065996|gb|EEA20089.1| DNA replication factor C subunit Rfc3, putative [Talaromyces
marneffei ATCC 18224]
Length = 397
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 99/214 (46%), Positives = 141/214 (65%), Gaps = 4/214 (1%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++D+V Q++++ + + + LPH L YGPPGTGKT+T++A +++G
Sbjct: 44 LPWVEKYRPSSLDEVQGHQDILATINRFIDSHRLPHLLLYGPPGTGKTTTILALARRIYG 103
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPFKIVILDEADS 148
R+ +LELNASDDRGI V+R+++KTFA Q + FK++ILDEAD+
Sbjct: 104 SKNMRQMVLELNASDDRGIDVVREQIKTFASTKQIFSVAAPAKENSLGAFKLIILDEADA 163
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALRR MEK T + RFC+I NY + L SRC++FRF PL E + + + +
Sbjct: 164 MTATAQMALRRIMEKYTANARFCIIANYTHKLSPALLSRCTRFRFSPLKEVDIRSLVDKV 223
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E E+V +A+E+LV S GDMRRA+ LQ+C
Sbjct: 224 IEAENVRIQPQAIESLVRLSKGDMRRALNVLQAC 257
>gi|294461526|gb|ADE76324.1| unknown [Picea sitchensis]
gi|294463669|gb|ADE77361.1| unknown [Picea sitchensis]
Length = 335
Score = 207 bits (526), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 121/314 (38%), Positives = 182/314 (57%), Gaps = 26/314 (8%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
N +PWVEKYRP + D++ Q+ +S L+ ++P+ + GPPGTGKT++++A H+
Sbjct: 14 NYDLPWVEKYRPSKVSDIVGNQDALSRLQVIARDGNMPNLILAGPPGTGKTTSILALAHE 73
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEAD 147
L G Y+E ++ELNASDDRGI V+R+K+K FAQ+ + PP KI+ILDEAD
Sbjct: 74 LLGSNYKEGVIELNASDDRGIDVVRNKIKMFAQKKVT--------LPPGRHKIIILDEAD 125
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
SMT AQ ALRRTME + STRF L CN + II+P+ SRC+ RF L++ +L RL
Sbjct: 126 SMTGGAQQALRRTMEIFSNSTRFALACNTSAKIIEPIQSRCAIVRFSKLSDQEILGRLMR 185
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP- 266
+ E E V + LE ++ T+ GDMR+A+ LQ A G + + E+V +V P+P
Sbjct: 186 VVEAEKVAYVPEGLEAIIFTADGDMRQALNNLQ--ATYSGFQFVNQENVFKVCDQ-PHPL 242
Query: 267 ----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
++ +L+ +F +++L YSAT + ++ + D + L LE
Sbjct: 243 HVKSMVQNVLE-GNFDEACSRLKNLYDLGYSATDIITTLFRVIKN----YDMPEYLKLEF 297
Query: 323 LAE---CNARLQDG 333
+ E + R+ DG
Sbjct: 298 IRETGFAHMRISDG 311
>gi|401840377|gb|EJT43220.1| RFC4-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 323
Score = 207 bits (526), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 116/327 (35%), Positives = 182/327 (55%), Gaps = 17/327 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK + D++ +E + L++ ++PH + G P GKT+++ H+L G
Sbjct: 9 LPWVEKYRPKVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPSIGKTTSVHCLAHELLG 68
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ Y + +LELNASDDRGI V+R+++K FAQ+ P KI+ILDEADSMT
Sbjct: 69 NSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH------LPQGRHKIIILDEADSMTAG 122
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L RL I + E
Sbjct: 123 AQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLEIIKLE 182
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
V LE ++ T+ GDMR+AI LQS G +VN D + P+P I K +
Sbjct: 183 DVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHDLVNADNVFRIVDSPHPLIVKKM 239
Query: 273 KV-----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
+ DS Q+L DL + YS+ + + + + + + + +++++ +
Sbjct: 240 LLATNLDDSIQILRT---DLWKKGYSSIDIVTTSFRVTKNLTQVKESVRLEMIKEIGLTH 296
Query: 328 ARLQDGASEYIQILDLGSIVIKANKTA 354
R+ +G Y+Q+ + + + + N A
Sbjct: 297 MRILEGVGTYLQLAGMLAKIHRLNTKA 323
>gi|320593090|gb|EFX05499.1| aaa ATPase domain containing protein [Grosmannia clavigera kw1407]
Length = 357
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 189/346 (54%), Gaps = 16/346 (4%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVS-TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKK 59
M A + + G+ + S++K +++ TS T N +PWVEKYRP +DD++ E + LK
Sbjct: 1 MPAAAKPEEKGESSTSAAKKALAATSNGTPNYELPWVEKYRPAFLDDIVGNTETIERLKI 60
Query: 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119
++PH + G PG GKT++++ QL GD Y+E +LELNASD+RGI V+R+++K
Sbjct: 61 IAKDGNMPHIIISGMPGIGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKG 120
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
FAQ+ + P KIVILDEADSMT AQ ALRRTME + +TRF CN +
Sbjct: 121 FAQKKVT------LPAGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNK 174
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239
II+PL SRC+ R+ L + ++ RL I E E V L LV ++ GDMR+AI L
Sbjct: 175 IIEPLQSRCAILRYARLTDAQVVKRLLQIIEAEQVRYSDDGLAALVFSAEGDMRQAINNL 234
Query: 240 QSCARLKGGEGIVNED-VLEVTGVIPNPW-IEKLLKV---DSFQVLEKYIEDLILEAYSA 294
QS G G V+ D V +V P+P ++ +LK + + +L YS+
Sbjct: 235 QST---HAGFGFVSGDNVFKVVDA-PHPIKVQAMLKACHEGNVDAALDILHELWRLGYSS 290
Query: 295 TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
+ + + LS+ K + ++ + ++ +G +Q+
Sbjct: 291 HDIISTMFRVTKTMPGLSEHAKLEFIREIGFTHMKILEGVQTLLQL 336
>gi|190345167|gb|EDK37005.2| hypothetical protein PGUG_01103 [Meyerozyma guilliermondii ATCC
6260]
Length = 327
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/324 (38%), Positives = 188/324 (58%), Gaps = 26/324 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD++ +E V LK ++PH + G PG GKT+++ ++L G
Sbjct: 10 LPWVEKYRPHKLDDIVGNEETVERLKLIAQDGNMPHMIISGLPGIGKTTSIHCLAYELLG 69
Query: 93 D-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSM 149
MY + LELNASDDRGI V+R+K+K FAQ S PP KI+ILDEADSM
Sbjct: 70 KTMYDQATLELNASDDRGIDVVRNKIKQFAQTKIS--------LPPGRHKIIILDEADSM 121
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ ALRRTME + +TRF CN S II+PL SRC+ R+ LA++ +L+RL I
Sbjct: 122 TPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLSRLLEIA 181
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPNPW- 267
+ E V + + L+ L+ T+ GDMR+AI +QS G G V++ +V ++ P+P
Sbjct: 182 KAEDVKYNSQGLQALIFTAEGDMRQAINNMQSTV---AGFGFVDDVNVFKIVDQ-PHPLV 237
Query: 268 IEKLL--------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
I+K+L K D L + ++DL + YSA + + + +S+ ++ I
Sbjct: 238 IKKILNSCCSNDGKGDIDTAL-RLLDDLWNKGYSAIDIVTSTFRVAKTLPGISESKRLDI 296
Query: 320 LEKLAECNARLQDGASEYIQILDL 343
++++ + R+ +G S Y+Q+ L
Sbjct: 297 IKEVGLVHMRVLEGVSTYLQLCGL 320
>gi|344231186|gb|EGV63068.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 325
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 120/317 (37%), Positives = 190/317 (59%), Gaps = 21/317 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +D+++ +E V LK + ++PH + G PG GKT+++ +L G
Sbjct: 11 LPWVEKYRPHKLDNIVGNEETVERLKLIANDGNMPHMIISGLPGIGKTTSIHCLALELLG 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSM 149
++Y+ LELNASDDRGI V+R+++K FAQ PP KI+ILDEADSM
Sbjct: 71 PELYKSATLELNASDDRGIDVVRNRIKQFAQTKIQ--------LPPGRHKIIILDEADSM 122
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ ALRRTME + +TRF CN S II+PL SRC+ R+ LA++ +LTRL +C
Sbjct: 123 TPGAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYNKLADDQVLTRLLEVC 182
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPNPW- 267
+ E+V + + L+ L+ T+ GDMR+AI LQS G G+VN+ +V ++ P+P
Sbjct: 183 KLENVQFNTEGLQALIFTAEGDMRQAINNLQSTV---AGFGMVNDVNVFKIVDQ-PHPLV 238
Query: 268 IEKLLK-VDSFQVLEKYI---EDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 323
I K+L+ S Q ++ I + L ++ YSA + + + +++ ++ +++++
Sbjct: 239 IRKMLRSCCSSQDIDNAIDLLDGLWVKGYSAIDIVTSAFKVAKTLPDINESKRLEVIKEI 298
Query: 324 AECNARLQDGASEYIQI 340
+ R+ +G S Y+Q+
Sbjct: 299 GFTHMRVLEGVSTYLQL 315
>gi|255931513|ref|XP_002557313.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211581932|emb|CAP80071.1| Pc12g04440 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 352
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/329 (36%), Positives = 179/329 (54%), Gaps = 13/329 (3%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S + +T+G + +PWVEKYRP +DD++ E V LK ++PH + G P
Sbjct: 11 SRNGARANTAGAAVDYELPWVEKYRPIFLDDIVGNTETVERLKIIAKDGNMPHVIISGMP 70
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G GKT++++ QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ + P
Sbjct: 71 GIGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT------LPQ 124
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
K+VILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+ R+
Sbjct: 125 GRHKLVILDEADSMTAGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYAR 184
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L + ++ RL ICE E V + LV ++ GDMR+AI LQS G G V+ D
Sbjct: 185 LTDAQVVKRLMQICEAEKVQHSEDGIAALVFSAEGDMRQAINNLQSTW---SGFGFVSGD 241
Query: 256 VLEVTGVIPNPW-IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 311
+ P+P ++ ++K V + + +L YSA + + + +L
Sbjct: 242 NVFRVVDSPHPVKVQAMIKACWEGKVDVALEGLNELWTLGYSAHDIISTMFRVTKTIPTL 301
Query: 312 SDKQKALILEKLAECNARLQDGASEYIQI 340
S+ K + ++ + R+ DG +Q+
Sbjct: 302 SEHSKLEFIREIGFTHMRILDGVQSLLQL 330
>gi|384501081|gb|EIE91572.1| hypothetical protein RO3G_16283 [Rhizopus delemar RA 99-880]
Length = 343
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 124/340 (36%), Positives = 191/340 (56%), Gaps = 21/340 (6%)
Query: 7 TGKLGKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADL 66
T + D P S ++S + +PWVEKYRP + D++ +E VS L ++
Sbjct: 2 TTAMDIDTPKQS----TSSNAEEDFILPWVEKYRPLYLKDIVGNEEAVSRLMTIAKDGNM 57
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTAS 126
P+ + G PG GKT++++ H++ G Y++ +LELNASDDRGI VIR ++KTFAQ+ +
Sbjct: 58 PNLILTGMPGIGKTTSIVCLAHEMLGASYKDAVLELNASDDRGIDVIRSRIKTFAQKKVT 117
Query: 127 GFNQDGKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184
PP KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+
Sbjct: 118 --------LPPGMHKIIILDEADSMTGGAQQALRRTMEIYSNTTRFALACNQSNKIIEPI 169
Query: 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244
SR + R+ L +L RL IC+ E V + + LE L+ T+ GDMR+AI LQS
Sbjct: 170 QSRTAVLRYTKLTNEEVLKRLLEICQMEKVNYNDEGLEALIFTADGDMRQAINNLQST-- 227
Query: 245 LKGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQV-LEKYI---EDLILEAYSATQLFDQ 300
G + + E+V +V P+P + + + +V L++ + E+L YSA +
Sbjct: 228 FYGFKYVNAENVFKVCDQ-PHPMVAQHIITCCSEVKLDEAVQCMEELYYLGYSALDIITT 286
Query: 301 FHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
F +V S ++L + + L+++ + R+ DG +Q+
Sbjct: 287 FFRMVRSYNALDEGLRLDYLKEIGLTHMRILDGHQSILQL 326
>gi|388855091|emb|CCF51222.1| probable RFC4-DNA replication factor C, 37 kDa subunit [Ustilago
hordei]
Length = 343
Score = 206 bits (525), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 123/330 (37%), Positives = 189/330 (57%), Gaps = 22/330 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DDV+ ++ + LK + + PH L G PG GKT++++ L G
Sbjct: 22 LPWVEKYRPLRLDDVVGNRDTIDRLKVIQNDGNCPHLLISGLPGIGKTTSVLCLARALLG 81
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
D Y+E +LELNASD+RG+ ++R+K+K FAQ+ S PP KIVILDEADSMT
Sbjct: 82 DAYKEGVLELNASDERGVDIVRNKIKNFAQKKVS--------LPPGRHKIVILDEADSMT 133
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AAQ ALRRTME + +TRFC CN + II+P+ SRC+ R+ + + +L RL IC+
Sbjct: 134 PAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKIRDEQILKRLLEICK 193
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPW-I 268
E V + L ++ TS GDMR+AI LQS G G VN E+V +V P+P+ I
Sbjct: 194 MEGVEYSDEGLGAIIFTSEGDMRQAINNLQSTYT---GLGFVNPENVFKVCDQ-PHPFLI 249
Query: 269 EKLLKVDSFQVLEKYIEDL---ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
LL V+++ +E L + Y+A + +V + + + K ++++
Sbjct: 250 RSLLMACKKGVVDEAMEKLDEIWSKGYAAVDIVTTLFRVVKTLDGVPEATKLEFIKEIGW 309
Query: 326 CNARLQDGASEYIQILDLGSIVIKANKTAV 355
+ ++ +G + +Q LG ++ + K ++
Sbjct: 310 THMKILEGVATVVQ---LGGLIARLCKLSM 336
>gi|224013894|ref|XP_002296611.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
gi|220968963|gb|EED87307.1| replication factor C 37 KD subunit [Thalassiosira pseudonana
CCMP1335]
Length = 336
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/320 (37%), Positives = 181/320 (56%), Gaps = 22/320 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DDV+ ++ + L+ ++P+ + GPPGTGKT+++ A QL G
Sbjct: 19 PWVEKYRPRNLDDVVGNEDTLVRLRAIAEDGNMPNLILCGPPGTGKTTSVHALARQLLGS 78
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
Y +LELNASD RGI V+R+K+K FA N+ P KI+ILDEADSMT AA
Sbjct: 79 AYSNGVLELNASDSRGIDVVRNKIKGFA------MNKVNLPVGRHKIIILDEADSMTSAA 132
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME + +TRF L CN + II+P+ SR + R+ L + +L RL+++C +E
Sbjct: 133 QQALRRTMEIYSNTTRFALACNVSTKIIEPIQSRAAILRYSRLTDEQILNRLKFVCGEEE 192
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WI 268
V D LE ++ T+ GDMR A+ +Q A + G E + +V +V P+P +
Sbjct: 193 VSYDDGGLEAIIFTAEGDMRNALNNIQ--ATVSGFEHVSQTNVFKVCDQ-PHPKTVRGIL 249
Query: 269 EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE--- 325
+ +K D+ + + + + +L YS + + + S + +AL LE L E
Sbjct: 250 DSCIKGDTTKAVVE-VRNLWNTGYSCSDIIGTLFKVAKS----YEMPEALKLEYLREIGF 304
Query: 326 CNARLQDGASEYIQILDLGS 345
+ R+ DG +Q+L L +
Sbjct: 305 THMRIADGVGTLLQLLGLAA 324
>gi|68490424|ref|XP_710962.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
gi|46432227|gb|EAK91721.1| hypothetical protein CaO19.10723 [Candida albicans SC5314]
Length = 361
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 128/333 (38%), Positives = 192/333 (57%), Gaps = 42/333 (12%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM- 94
VEKYRP ++++V QQE+V ++K + LPH LFYGPPGTGKTST+IA +++G
Sbjct: 26 VEKYRPDSLEEVKGQQEIVDTVRKFVETGKLPHLLFYGPPGTGKTSTIIALAKEIYGATN 85
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQ----------QTASGFNQDGKPCPPFKIVILD 144
Y+ ILELNASDDRGI V+R+++K FA QTAS NQ FK++ILD
Sbjct: 86 YKNMILELNASDDRGIDVVRNQIKNFASTRQIFTKNTSQTASN-NQ-------FKLIILD 137
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EAD+MT+ AQ +LRR +EK TK+ RFC++ NY + L SRC++FRF P+ + + R
Sbjct: 138 EADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDISAIKDR 197
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE-----GIVNED---- 255
L + +E+V +A++ L++ S GDMRRA+ LQSC G E G N++
Sbjct: 198 LNTVIIKENVNISPEAIDALLKLSNGDMRRALNVLQSCKAALGDEEKEEDGHANDEIDVD 257
Query: 256 -VLEVTGVIPNPW-----IEKLLKVD---SFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
+ + G P+P ++ +LK D ++ L KY ++ + L F +I +
Sbjct: 258 MIYDCVGA-PHPQDVETCLDSILKDDWTTAYLTLNKY---KTIKGLALIDLITGFIEI-L 312
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
+ L K + IL+ L++ + G ++ IQ
Sbjct: 313 NNYKLKPKTRLEILKGLSDIEYGISKGGNDKIQ 345
>gi|288560386|ref|YP_003423872.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
gi|288543096|gb|ADC46980.1| replication factor C small subunit RfcS [Methanobrevibacter
ruminantium M1]
Length = 314
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 177/317 (55%), Gaps = 24/317 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+DD++ Q+ +V LKK + +P+ +F GP G GKT++ +A + GD
Sbjct: 4 PWVEKYRPQTLDDIVGQKHIVESLKKYVDQGSMPNLMFTGPAGVGKTTSALALVKAILGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R+ LELNASD RGI+ +R +K F + G PF+I+ LDE D+MT A
Sbjct: 64 YWRQNFLELNASDARGIETVRTNIKNFCRLKPVG--------APFRIIFLDEVDNMTKDA 115
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK+ F L CNY S II P+ SRC+ FRF P+ + RL+YI E E
Sbjct: 116 QHALRREMEMYTKTCSFILSCNYSSKIIDPIQSRCAIFRFAPIKAEEIADRLKYIAEAEG 175
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ KA+ET+V GDMR+++ LQS A G + ED V V+ +++ +
Sbjct: 176 CEYEEKAIETIVLFGEGDMRKSVNMLQSAA----STGNITED--HVYEVVTKARPQEIKE 229
Query: 274 VDSFQVLEKYIED-------LILEAYSATQLFDQFHDIVMSA---SSLSDKQKALILEKL 323
+ + K++E +IL+ S + +Q + V +S + ++ +
Sbjct: 230 MVDAALRGKFMESRNILRDVMILQGTSGEDMVNQIYQDVAGRVMDGKMSGEVYMELIGAI 289
Query: 324 AECNARLQDGASEYIQI 340
A+ + R+++GA+ IQ+
Sbjct: 290 ADTDFRIREGANPRIQL 306
>gi|154322657|ref|XP_001560643.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
gi|347837173|emb|CCD51745.1| similar to replication factor C subunit [Botryotinia fuckeliana]
Length = 355
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 125/343 (36%), Positives = 195/343 (56%), Gaps = 26/343 (7%)
Query: 9 KLGKDAPSSSKTSV--STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADL 66
++G+ + S++K ++ +T+G T N +PWVEKYRP +DDV+ E + LK ++
Sbjct: 8 EVGESSTSAAKKALKANTNGVT-NYELPWVEKYRPVFLDDVVGNTETIERLKIIAKDGNM 66
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTAS 126
PH + G PG GKT++++ QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 67 PHVIISGMPGIGKTTSVLCLARQLLGDSYKEAVLELNASDERGIDVVRNRIKGFAQKKVT 126
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
P K+VILDEADSMT AQ ALRRTME + +TRF CN + II+PL S
Sbjct: 127 ------LPAGRHKLVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQS 180
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RC+ R+ L + ++ RL I E E V L LV ++ GDMR+AI LQS
Sbjct: 181 RCAILRYARLTDQQVVKRLLQIIETEKVEYSDDGLAALVFSAEGDMRQAINNLQSTF--- 237
Query: 247 GGEGIVNEDVLEVTGVIPNPW---IEKLL------KVDSFQVLEKYIEDLILEAYSATQL 297
G G+VN D V V+ +P ++ ++ K+DS LE + +L YS+ +
Sbjct: 238 AGFGLVNGD--NVFKVVDSPHPIKVQAMIKACYEGKIDS--ALET-LNELWGLGYSSHDI 292
Query: 298 FDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
+ + ++LS+ K ++++ + ++ +G +Q+
Sbjct: 293 ISTMFRVTKTVNTLSEHSKLEFIKEIGFTHMKILEGVQTLLQL 335
>gi|342888810|gb|EGU88029.1| hypothetical protein FOXB_01512 [Fusarium oxysporum Fo5176]
Length = 1431
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/213 (46%), Positives = 138/213 (64%), Gaps = 6/213 (2%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM- 94
VEKYRP T+DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 623 VEKYRPNTLDDVSGHQDILATINKFIDQNRLPHLLLYGPPGTGKTSTILALARRIYGAAN 682
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQ-----QTASGFNQDGKPCPPFKIVILDEADSM 149
R+ +LELNASDDRGI V+R+++KTFA + G FK+++LDEAD+M
Sbjct: 683 MRQMVLELNASDDRGIDVVREQIKTFASTKQIFSMGGASARSGNSMAGFKLIVLDEADAM 742
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL E + + +
Sbjct: 743 TSTAQMALRRIMEKYTTNTRFCIIANYSHKLSPALLSRCTRFRFSPLKEGDIRVLVDKVV 802
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E+E V +A++ LV+ S GDMRRA+ LQ+C
Sbjct: 803 EEEHVRIGGEAVDALVKLSKGDMRRALNVLQAC 835
>gi|449301028|gb|EMC97039.1| hypothetical protein BAUCODRAFT_147217 [Baudoinia compniacensis
UAMH 10762]
Length = 397
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 99/215 (46%), Positives = 143/215 (66%), Gaps = 5/215 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ DV ++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 46 LPWVEKYRPASLSDVSGHHDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYG 105
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGK-PCPPFKIVILDEAD 147
+ R+ +LELNASDDRGI+V+R+++KTF+ Q A F++ + FK++ILDEAD
Sbjct: 106 NRNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFAGSFDKTQQDSIANFKLIILDEAD 165
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + +
Sbjct: 166 AMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDADIRHLVDK 225
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ +E V A+++LV S GDMRRA+ LQ+C
Sbjct: 226 VIVEEGVNIAPDAVDSLVSLSKGDMRRALNVLQAC 260
>gi|310795633|gb|EFQ31094.1| replication factor C [Glomerella graminicola M1.001]
Length = 393
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/249 (43%), Positives = 150/249 (60%), Gaps = 19/249 (7%)
Query: 13 DAPSSSKTSVSTSGK-----TRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCL 61
D P S + S+ K N PV PWVEKYRP ++ DV Q+++ + K +
Sbjct: 11 DVPVSKDITFSSDAKQGKRSAANLPVEAEDSLPWVEKYRPVSLADVSGHQDILVTINKFV 70
Query: 62 SGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTF 120
LPH L YGPPGTGKTST++A +++G + R+ +LELNASDDRGI V+R+++KTF
Sbjct: 71 DSNRLPHLLLYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGIDVVREQIKTF 130
Query: 121 AQQT-------ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173
A ++ G +K++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I
Sbjct: 131 ASTKQIFTLGPSAKSGGGGGGMASYKLIILDEADAMTNTAQMALRRIMEKYTVNTRFCII 190
Query: 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
NY + L SRC++FRF PL E + + + E+E V +A E LV+ S GDMR
Sbjct: 191 ANYSHKLSPALLSRCTRFRFSPLKERDIRVLVDKVIEEEHVKIMPEATEALVKLSKGDMR 250
Query: 234 RAITCLQSC 242
RA+ LQ+C
Sbjct: 251 RALNVLQAC 259
>gi|308810180|ref|XP_003082399.1| Replication factor C 2 (ISS) [Ostreococcus tauri]
gi|116060867|emb|CAL57345.1| Replication factor C 2 (ISS) [Ostreococcus tauri]
Length = 354
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/290 (40%), Positives = 178/290 (61%), Gaps = 24/290 (8%)
Query: 21 SVSTSGKTRNKPV---PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
+++ K + P+ PW+EKYRPKT+DD++ + V ++ ++ +P+ +F GPPG
Sbjct: 6 ALAAGAKAQTAPIDTLPWLEKYRPKTLDDIVGNDDAVDRMRSMVASGFMPNLMFCGPPGC 65
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GKTS + L GD Y++ +LE+NASD+RGI V+R+K+K FAQ+ + PP
Sbjct: 66 GKTSAIGVLSRALLGDKYKDAVLEMNASDERGIDVVRNKIKMFAQKKVT--------LPP 117
Query: 138 --FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
KIVILDEAD+MT AAQ ALRRTME + +TRFCL CN +I+P+ SRC+ RF
Sbjct: 118 GRTKIVILDEADAMTTAAQQALRRTMEIFSATTRFCLACNTSDKVIEPIQSRCAIVRFVK 177
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L + +L RL + E+E V K LE +V T+ GDMR+A+ LQS A+ G G+++E+
Sbjct: 178 LTDEQVLKRLMTVIEREKVAYVPKGLEAIVFTADGDMRQALNNLQSTAQ---GFGLIDEE 234
Query: 256 VLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQ-LFDQFHDI 304
+ P+P I + SF +L++ I+D AY+ + L+D+ + +
Sbjct: 235 NVFRVCDQPHPNIVR--DALSF-ILQENIDD----AYARIKSLYDKGYSV 277
>gi|451994907|gb|EMD87376.1| hypothetical protein COCHEDRAFT_1144919 [Cochliobolus
heterostrophus C5]
Length = 353
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 123/340 (36%), Positives = 183/340 (53%), Gaps = 27/340 (7%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
K A S++ + N +PWVEKYRP +DDV+ E + LK ++PH +
Sbjct: 8 KAAASNTVKPNPNAAGGANYELPWVEKYRPVYLDDVVGNTETIERLKIIAKDGNMPHMII 67
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT++++ HQL GD Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 68 SGMPGIGKTTSILCLAHQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT----- 122
Query: 132 GKPCPPF--KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189
PP K+VILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+
Sbjct: 123 ---LPPGRQKLVILDEADSMTSGAQQALRRTMEIYSATTRFAFACNQSNKIIEPLQSRCA 179
Query: 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249
R+ L + ++ R+ ICE E V + LV ++ GDMR+AI LQS G
Sbjct: 180 ILRYARLTDAQVVRRIMQICEAEDVKYSDDGIAALVFSAEGDMRQAINNLQSTF---AGF 236
Query: 250 GIVNEDVLEVTGVIPNPW---IEKLLK------VDSFQVLEKYIEDLILEAYSATQLFDQ 300
G VN D V V+ +P ++ ++K +D K + DL YS +
Sbjct: 237 GFVNGD--NVFKVVDSPHPIKVQSMIKACHEQRIDDALAALKELWDL---GYSCHDIIST 291
Query: 301 FHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
+ + +LS+ K ++++ + R+ +G +Q+
Sbjct: 292 MFKVTKTIDTLSEHAKLEFIKEIGFTHMRILEGVQTLLQL 331
>gi|452820599|gb|EME27639.1| replication factor C subunit 2/4 [Galdieria sulphuraria]
Length = 321
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 126/332 (37%), Positives = 186/332 (56%), Gaps = 29/332 (8%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRPKT+D+V+ +VVS L+ + G LPH L GPPG GKT+ ++ QL G+
Sbjct: 4 PWVEKYRPKTLDEVVGNPQVVSRLQAVVHGGSLPHLLLSGPPGCGKTTMILCLARQLLGE 63
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ + +LELNASDDRGI VIR KVKTFAQQ S P KIVILDEADSMT
Sbjct: 64 EWFSQAVLELNASDDRGIDVIRSKVKTFAQQKMS------LPSGKHKIVILDEADSMTEG 117
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME +TRF L CN S II+P+ SRC+ R + L ++ + RL+ + E
Sbjct: 118 AQQALRRTMEIYATTTRFALACNTPSKIIEPIQSRCAVVRLRRLEDSEIAERLEQVLRLE 177
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+V + LE ++ T+ GDMR A+ Q A + G + E+V +V P+P + K
Sbjct: 178 NVEWENSGLEAILFTADGDMRNALNNAQ--ATVCGFGKLSQENVFKVCDQ-PHPNLVK-- 232
Query: 273 KVDSFQVLEKYIE-----------DLILEAYSATQLFDQFHDIVMSASSLSDKQKALILE 321
Q+LE +E L + YSA + + S +++ + +++
Sbjct: 233 -----QILESALEQNVTKSNEILCSLWNKGYSALDIVQTLFRVARS-HEMNEHLRLEVMK 286
Query: 322 KLAECNARLQDGASEYIQILDLGSIVIKANKT 353
+ + + ++ +G + IQ+ L S + + +++
Sbjct: 287 IVGKTHMKIMEGCASLIQLTALTSFLSEVSES 318
>gi|222445467|ref|ZP_03607982.1| hypothetical protein METSMIALI_01106 [Methanobrevibacter smithii
DSM 2375]
gi|261349971|ref|ZP_05975388.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
gi|222435032|gb|EEE42197.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2375]
gi|288860754|gb|EFC93052.1| replication factor C small subunit [Methanobrevibacter smithii DSM
2374]
Length = 315
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 172/315 (54%), Gaps = 19/315 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD+I Q+++V+ L+K + +P+ +F GP G GKT+T IA + G+
Sbjct: 4 PWVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R+ LELNASD RGI +R+ +K F + G PF+I+ LDE D+MT A
Sbjct: 64 YWRQNFLELNASDARGIDTVRNDIKNFCRLKPVG--------APFRIIFLDEVDNMTKDA 115
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK+ F L CNY S II P+ SRC+ FRF P+ + RL+YIC E
Sbjct: 116 QHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSEG 175
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP----NPWIE 269
+E + + GDMR+A+ LQ+ A G+ + + V EV + I
Sbjct: 176 FEYTDGGIEAIEYFAEGDMRKAVNVLQAAA--SEGKQVDEDAVYEVVSKAKPQDVHNLIT 233
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI----LEKLAE 325
K L D E ++L+ S + Q + V S K +A I +E +A+
Sbjct: 234 KALSGDFMGARNLLRETMVLQGTSGEDMVSQIYQDV-SKRVFEGKMEADIYIDLIEAIAD 292
Query: 326 CNARLQDGASEYIQI 340
C+ R+++GA+ IQ+
Sbjct: 293 CDFRIREGANPRIQL 307
>gi|154339736|ref|XP_001565825.1| putative replication factor C, subunit 4 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063143|emb|CAM45343.1| putative replication factor C, subunit 4 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 360
Score = 206 bits (523), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 125/351 (35%), Positives = 187/351 (53%), Gaps = 37/351 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF-- 91
PWVEKYRP+T+ D++ E +S L+ +LP+ L GPPGTGKT++M+ L
Sbjct: 7 PWVEKYRPQTVTDIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLARDLLLQ 66
Query: 92 ---------------GDMYRERILELNASDDRGIQVIRDKVKTFAQ----------QTAS 126
D+ ++ +LELNASDDRG+ V+R+K+K FAQ T
Sbjct: 67 STDASSAGTSLGGSTKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKFFSTGE 126
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
G +D KIV+LDEADSMT AAQ ALRRTME + +TRF CN S II+P+ S
Sbjct: 127 GPTRDEHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSKIIEPIQS 186
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RC+ RFK L++ +L RL Y+ +QESV LE L+ + GD+R+A+ LQ+
Sbjct: 187 RCAVVRFKKLSDADILKRLVYVIQQESVSYTDDGLEALLYLAEGDLRQALNSLQAT---H 243
Query: 247 GGEGIVNEDVLEVTGVIPNP-WIEKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQF 301
G G+VN D + P+P +E ++ S K + L+ Y+ + F
Sbjct: 244 TGYGLVNADNVFKVCDQPHPVLVENIITACITKRSIDEAHKEMNRLLNRGYAPVDVIATF 303
Query: 302 HDIVMSASSL--SDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
+V + + L S+ Q+ +L+ + E R+ +G +Q+ + + +I A
Sbjct: 304 FKVVQTNARLFRSELQQLEVLKIVGETTMRIAEGVGTSLQLAAMLARMITA 354
>gi|159041324|ref|YP_001540576.1| ATPase central domain-containing protein [Caldivirga maquilingensis
IC-167]
gi|157920159|gb|ABW01586.1| AAA ATPase central domain protein [Caldivirga maquilingensis
IC-167]
Length = 318
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/205 (48%), Positives = 136/205 (66%), Gaps = 7/205 (3%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
+E++RP + D+++Q+ V L + + DLPH LFYGPPG GKT+ +A +L+GD +
Sbjct: 1 MERFRPVRLVDLVDQEGVKVGLMEFVRRGDLPHLLFYGPPGVGKTTAALALARELYGDSW 60
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
R +LELNASD+RGI VIR+KVK FA+ +G P P FK+VILDEAD+MT AQ
Sbjct: 61 RSSVLELNASDERGIDVIREKVKEFARTIPTG------PVP-FKLVILDEADNMTSDAQQ 113
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRR ME +TRF L+ NY+S II+P+ SRC+ FRF PL + ++ RL+ I ++ V
Sbjct: 114 ALRRIMEMYASTTRFILLANYISGIIEPIQSRCAIFRFNPLPKEAVIERLRQIAKETGVE 173
Query: 216 CDFKALETLVETSGGDMRRAITCLQ 240
LE + E S GDMR+AI LQ
Sbjct: 174 VTEDGLEAIWEVSQGDMRKAINTLQ 198
>gi|358391339|gb|EHK40743.1| hypothetical protein TRIATDRAFT_127338 [Trichoderma atroviride IMI
206040]
Length = 391
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 110/244 (45%), Positives = 155/244 (63%), Gaps = 15/244 (6%)
Query: 14 APSSSKTSVSTSGKTR----NKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSG 63
APS+ T + + K + N PV PWVEKYRP T++DV Q++++ + K +
Sbjct: 14 APSADITFSAEAAKGKRSAANLPVEAEDSLPWVEKYRPVTLEDVSGHQDILATINKFVEQ 73
Query: 64 ADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQ 122
LPH L YGPPGTGKTST++A +++G R+ +LELNASDDRGI V+R+++KTFA
Sbjct: 74 NRLPHLLLYGPPGTGKTSTILALARRIYGVSNMRQMVLELNASDDRGIDVVREQIKTFAS 133
Query: 123 Q----TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
+ G FK++ILDEAD+MT+ AQ ALRR MEK T +TRFC+I NY
Sbjct: 134 TKQIFSMGGGASKSNSIAGFKLIILDEADAMTNTAQMALRRIMEKYTANTRFCIIANYAH 193
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC 238
+ L SRC++FRF PL E + ++ + E+E+V +A++ LV+ S GDMRRA+
Sbjct: 194 KLSPALLSRCTRFRFSPLKEGDIRVLVEKVVEEENVKIQGEAVDALVKLSKGDMRRALNV 253
Query: 239 LQSC 242
LQ+C
Sbjct: 254 LQAC 257
>gi|425773728|gb|EKV12062.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum PHI26]
gi|425782289|gb|EKV20208.1| DNA replication factor C subunit Rfc4, putative [Penicillium
digitatum Pd1]
Length = 352
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/329 (35%), Positives = 180/329 (54%), Gaps = 13/329 (3%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S + +T+G + +PWVEKYRP +DD++ E V LK ++PH + G P
Sbjct: 11 SRNGAKANTAGAPVDYELPWVEKYRPTFLDDIVGNTETVERLKIIAKDGNMPHVIISGMP 70
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G GKT++++ QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ + P
Sbjct: 71 GIGKTTSVLCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT------LPQ 124
Query: 136 PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKP 195
K+VILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+ R+
Sbjct: 125 GRHKLVILDEADSMTAGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYAR 184
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255
L + ++ RL ICE E+V + LV ++ GDMR+AI LQS G G V+ D
Sbjct: 185 LTDAQVVKRLMQICEAENVEHSEDGIAALVFSAEGDMRQAINNLQSTW---SGFGFVSGD 241
Query: 256 VLEVTGVIPNPW-IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSL 311
+ P+P ++ ++K V + + +L YS+ + + + +L
Sbjct: 242 NVFRVVDSPHPVKVQAMIKACWEGKVDVALEGLNELWTLGYSSHDIISTMFRVTKTIPTL 301
Query: 312 SDKQKALILEKLAECNARLQDGASEYIQI 340
S+ K + ++ + R+ DG +Q+
Sbjct: 302 SEHSKLEFIREIGFTHMRILDGVQSLLQL 330
>gi|451854539|gb|EMD67832.1| hypothetical protein COCSADRAFT_112005 [Cochliobolus sativus
ND90Pr]
Length = 394
Score = 205 bits (522), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/216 (46%), Positives = 144/216 (66%), Gaps = 6/216 (2%)
Query: 33 VPW--VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+PW VEKYRP ++DDV +++++ + K + LPH L YGPPGTGKTST++A ++
Sbjct: 42 LPWYVVEKYRPASLDDVEGHKDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRI 101
Query: 91 FGDM-YRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDG-KPCPPFKIVILDEA 146
+G+ R+ +LELNASDDRGI+V+R+++KTF+ +Q S + G FK++ILDEA
Sbjct: 102 YGNKNMRQMVLELNASDDRGIEVVREQIKTFSSTKQIFSAAPKTGDSSLATFKLIILDEA 161
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + +
Sbjct: 162 DAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRHLVD 221
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ E+E V A ++LV S GDMRRA+ LQ+C
Sbjct: 222 KVIEEEKVNITQDATDSLVTLSKGDMRRALNVLQAC 257
>gi|452840856|gb|EME42793.1| hypothetical protein DOTSEDRAFT_80413 [Dothistroma septosporum
NZE10]
Length = 401
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 145/240 (60%), Gaps = 13/240 (5%)
Query: 16 SSSKTSVSTSGKTRNKPV------PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHF 69
SS+ T N PV PWVEKYRP ++ DV ++++ + K + LPH
Sbjct: 25 SSNNTDSKGKRSAANLPVELEDNLPWVEKYRPNSLSDVSGHHDILATINKFVDTNRLPHL 84
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFA---QQTA 125
L YGPPGTGKTST +A +++G+ R+ +LELNASDDRGI V+R+++KTF+ Q A
Sbjct: 85 LLYGPPGTGKTSTALAMARRIYGNKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFA 144
Query: 126 SGF---NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
F N FK++ILDEAD+MT AQ ALRR MEK T +TRFC+I NY +
Sbjct: 145 GSFDKSNNQNDTIAHFKLIILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSP 204
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
L SRC++FRF PL + + + + +E V +A ++LV S GDMRRA+ LQ+C
Sbjct: 205 ALLSRCTRFRFSPLKDADIRQLVDKVISEEVVNIAPEAADSLVTLSKGDMRRALNVLQAC 264
>gi|148643236|ref|YP_001273749.1| replication factor C small subunit [Methanobrevibacter smithii ATCC
35061]
gi|158513780|sp|A5UMF3.1|RFCS_METS3 RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|148552253|gb|ABQ87381.1| replication factor C, small subunit, RfcS [Methanobrevibacter
smithii ATCC 35061]
Length = 315
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 172/315 (54%), Gaps = 19/315 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD+I Q+++V+ L+K + +P+ +F GP G GKT+T IA + G+
Sbjct: 4 PWVEKYRPQNLDDIIGQKQIVNRLQKYVGEESMPNLMFTGPAGVGKTTTAIALVKAILGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R+ LELNASD RGI +R+ +K F + G PF+I+ LDE D+MT A
Sbjct: 64 YWRQNFLELNASDARGIDTVRNDIKNFCRLKPVG--------APFRIIFLDEVDNMTKDA 115
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK+ F L CNY S II P+ SRC+ FRF P+ + RL+YIC E
Sbjct: 116 QHALRREMEMYTKTASFILSCNYSSKIIDPIQSRCAIFRFGPIKGEEIANRLKYICTSER 175
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP----NPWIE 269
+E + + GDMR+A+ LQ+ A G+ + + V EV + I
Sbjct: 176 FEYTDGGIEAIEYFAEGDMRKAVNVLQAAA--SEGKQVDEDAVYEVVSKAKPQDVHNLIT 233
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI----LEKLAE 325
K L D E ++L+ S + Q + V S K +A I +E +A+
Sbjct: 234 KALSGDFMGARNLLRETMVLQGTSGEDMVSQIYQDV-SKRVFEGKMEADIYIDLIEAIAD 292
Query: 326 CNARLQDGASEYIQI 340
C+ R+++GA+ IQ+
Sbjct: 293 CDFRIREGANPRIQL 307
>gi|212546239|ref|XP_002153273.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
marneffei ATCC 18224]
gi|210064793|gb|EEA18888.1| DNA replication factor C subunit Rfc4, putative [Talaromyces
marneffei ATCC 18224]
Length = 350
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 181/333 (54%), Gaps = 17/333 (5%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
A + + VST+G + +PWVEKYRP +DD++ E + LK ++PH + G
Sbjct: 9 AAARNGLHVSTAGAPPDYELPWVEKYRPVYLDDIVGNTETIERLKIIAKDGNMPHVIISG 68
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PG GKT++++ Q+ GD Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 69 MPGIGKTTSILCLARQMLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT------- 121
Query: 134 PCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PP K+VILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+
Sbjct: 122 -LPPGRHKLVILDEADSMTPGAQQALRRTMEIYSTTTRFAFACNQSNKIIEPLQSRCAIL 180
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + ++ RL ICE E V + LV ++ GDMR+AI LQS G G
Sbjct: 181 RYSRLTDGQVVKRLSQICEAEKVDFSEDGIAALVFSAEGDMRQAINNLQSTW---AGFGF 237
Query: 252 VNEDVLEVTGVIPNPW-IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS 307
V+ D + P+P ++ ++K + +L YS+ + + +
Sbjct: 238 VSGDNVFRVVDSPHPIKVQAMIKACWEGKVDAALDILNELWNLGYSSHDIISTMFRVTKT 297
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
+LS+ K ++++ + R+ DG +Q+
Sbjct: 298 IQTLSEHAKLEFIKEIGFTHMRILDGVGTLLQL 330
>gi|401424285|ref|XP_003876628.1| putative replication factor C, subunit 4 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322492871|emb|CBZ28150.1| putative replication factor C, subunit 4 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 360
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 125/353 (35%), Positives = 191/353 (54%), Gaps = 41/353 (11%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF-- 91
PWVEKYRP+T+ D++ E +S L+ +LP+ L GPPGTGKT++M+ L
Sbjct: 7 PWVEKYRPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLARDLLLQ 66
Query: 92 ---------------GDMYRERILELNASDDRGIQVIRDKVKTFAQ----------QTAS 126
D+ ++ +LELNASDDRG+ V+R+K+K FAQ T
Sbjct: 67 STDAGSAGASPGGATKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPKKFFSTGE 126
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
G +D KIV+LDEADSMT AAQ ALRRTME + +TRF CN S II+P+ S
Sbjct: 127 GVAKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSKIIEPIQS 186
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RC+ RFK L++ +L RL Y+ +QE+V LE L+ + GD+R+A+ LQ+
Sbjct: 187 RCAVVRFKKLSDADILKRLVYVIQQENVSYTDDGLEALLYLAEGDLRQALNALQAT---H 243
Query: 247 GGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIED-------LILEAYSATQLFD 299
G G+VN D + P+P + + V + V+++ IE+ L+ Y+ +
Sbjct: 244 TGYGLVNADNVFKVCDQPHPLLVE--NVITACVMKRNIEEAHREMNRLLNRGYAPVDVIA 301
Query: 300 QFHDIVMSASSL--SDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
F +V + + L S+ Q+ +L+ + E R+ +G +Q+ + + +I A
Sbjct: 302 TFFKVVQTNARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARMIAA 354
>gi|357165331|ref|XP_003580347.1| PREDICTED: replication factor C subunit 2-like [Brachypodium
distachyon]
Length = 333
Score = 205 bits (521), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 123/320 (38%), Positives = 183/320 (57%), Gaps = 24/320 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + DV+ + VS L+ ++P+ + GPPGTGKT++++A H++ G
Sbjct: 16 IPWVEKYRPSRVADVVGNSDAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLG 75
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
YRE +LELNASDDRG+ V+R+K+K FAQ+ + PP KIVILDEADSMT
Sbjct: 76 PSYREGVLELNASDDRGLDVVRNKIKMFAQKKVT--------LPPGRHKIVILDEADSMT 127
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L++ +L RL +
Sbjct: 128 TGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVA 187
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP---- 266
E V + LE ++ T+ GDMR+A+ LQ A + G + E+V +V P+P
Sbjct: 188 AEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATVSGFRFVNQENVFKVCDQ-PHPLHVK 244
Query: 267 -WIEKLL--KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 323
++ +L K D K + DL YS T + +V + +++ K +L++
Sbjct: 245 NMVKNVLDGKFDEACSGLKQLYDL---GYSPTDIITTLFRVVKN-YDMAEYLKLELLKET 300
Query: 324 AECNARLQDGASEYIQILDL 343
+ R+ DG ++Q+ L
Sbjct: 301 GFAHMRICDGVGSFLQLSGL 320
>gi|328772590|gb|EGF82628.1| hypothetical protein BATDEDRAFT_86526 [Batrachochytrium
dendrobatidis JAM81]
Length = 340
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 127/343 (37%), Positives = 196/343 (57%), Gaps = 21/343 (6%)
Query: 17 SSKTSVSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
+S + ST+ P +PW+EKYRP + D++ +E V+ L+ ++P+ + G P
Sbjct: 3 NSLANSSTAQPISESPELPWIEKYRPLVLSDIVGNEETVARLQIIAQEGNMPNIIIAGSP 62
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G GKT++++ H+L G Y+E +LELNASDDRGI+V+R+++K FAQ+ +
Sbjct: 63 GIGKTTSILCLAHELLGSAYKEGVLELNASDDRGIEVVRNRIKMFAQKKVT--------L 114
Query: 136 PP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRF 193
PP KIVILDEADSMT AQ ALRRTME + +TRF L CN S II+P+ SRC+ R+
Sbjct: 115 PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNLSSKIIEPIQSRCAILRY 174
Query: 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253
L + +L RL ICE E+V + L ++ T+ GDMR+A+ LQS G G VN
Sbjct: 175 TRLTDLQLLRRLLEICEMENVKHTPEGLSAIIFTADGDMRQAVNNLQST---NSGFGFVN 231
Query: 254 -EDVLEVTGVIPNP-WIEKLLKVDSFQVLEKYIE---DLILEAYSATQLFDQFHDIVMSA 308
E+V +V P+P ++K++ +E I+ +L + YSA + +V S
Sbjct: 232 PENVFKVCDQ-PHPVLVQKIVDACVRTEVEIGIQGMTELWDKGYSALDIITTLFRVVKSF 290
Query: 309 SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
S+++ K ++++ + RL +G +Q+ L + K N
Sbjct: 291 -SMAEYIKLEFVKEIGFAHMRLLEGCQSLLQLHGLIGKLCKVN 332
>gi|121703562|ref|XP_001270045.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
clavatus NRRL 1]
gi|119398189|gb|EAW08619.1| DNA replication factor C subunit Rfc4, putative [Aspergillus
clavatus NRRL 1]
Length = 352
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 118/323 (36%), Positives = 178/323 (55%), Gaps = 17/323 (5%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
T+G + +PWVEKYRP +DD++ E V LK ++PH + G PG GKT+++
Sbjct: 19 TAGAPADYELPWVEKYRPIFLDDIVGNTETVERLKIIAKDGNMPHVIISGMPGIGKTTSV 78
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIV 141
+ QL GD Y+E +LELNASD+RGI V+R+++K FAQ+ + PP KIV
Sbjct: 79 LCLARQLLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT--------LPPGRHKIV 130
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+ R+ L + +
Sbjct: 131 ILDEADSMTPGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYARLTDAQV 190
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261
+ RL+ IC+ E V + LV ++ GDMR+AI LQS G G+VN D +
Sbjct: 191 VQRLKQICDAEKVEHTEDGIAALVFSAEGDMRQAINNLQSTW---SGFGLVNGDNVFRVV 247
Query: 262 VIPNPW-IEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 317
P+P ++ ++K + + +L YS+ + + + +LS+ K
Sbjct: 248 DSPHPIKVQAMIKACWEGKIDAALETLNELWNLGYSSHDIISTMFRVTKTIPTLSEHSKL 307
Query: 318 LILEKLAECNARLQDGASEYIQI 340
+ ++ + R+ DG +Q+
Sbjct: 308 EFIREIGFTHMRILDGVQSLLQL 330
>gi|242074030|ref|XP_002446951.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
gi|241938134|gb|EES11279.1| hypothetical protein SORBIDRAFT_06g025740 [Sorghum bicolor]
Length = 333
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 181/318 (56%), Gaps = 26/318 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + DV+ + V+ L+ ++P+ + GPPGTGKT++++A H+L G
Sbjct: 15 IPWVEKYRPNRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 74
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YRE +LELNASDDRG+ V+R+K+K FAQ+ + Q G+ KIVILDEADSMT
Sbjct: 75 PSYREAVLELNASDDRGLDVVRNKIKMFAQKKVT--LQPGR----HKIVILDEADSMTTG 128
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L++ +L RL + E
Sbjct: 129 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAE 188
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----W 267
V + LE ++ T+ GDMR+A+ LQ A G + E+V +V P+P
Sbjct: 189 KVPYVPEGLEAIIFTADGDMRQALNNLQ--ATFSGFRFVNQENVFKVCDQ-PHPLHVKNM 245
Query: 268 IEKLL--KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
++ +L K D K + DL YS T + +V + D + L LE L E
Sbjct: 246 VKNVLDGKFDEACAALKQLYDL---GYSPTDIITTLFRVVKN----YDMPEYLKLEMLKE 298
Query: 326 ---CNARLQDGASEYIQI 340
+ R+ DG ++Q+
Sbjct: 299 TGFAHMRICDGVGSFLQL 316
>gi|194706108|gb|ACF87138.1| unknown [Zea mays]
Length = 331
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 181/318 (56%), Gaps = 26/318 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + DV+ + V+ L+ ++P+ + GPPGTGKT++++A H+L G
Sbjct: 13 IPWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 72
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR+ +LELNASDDRG+ V+R+K+K FAQ+ + Q G+ KIVILDEADSMT
Sbjct: 73 PSYRDAVLELNASDDRGLDVVRNKIKMFAQKKVT--LQPGR----HKIVILDEADSMTSG 126
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L++ +L RL + E
Sbjct: 127 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAE 186
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----W 267
V + LE ++ T+ GDMR+A+ LQ A G I E+V +V P+P
Sbjct: 187 KVPYAPEGLEAIIFTADGDMRQALNNLQ--ATFSGFRFINQENVFKVCDQ-PHPLHVKNM 243
Query: 268 IEKLL--KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
++ +L K D K + DL YS T + +V + D + L LE L E
Sbjct: 244 VKNVLDGKFDEACSALKQLYDL---GYSPTDIITTLFRVVKN----YDMAEYLKLEMLKE 296
Query: 326 ---CNARLQDGASEYIQI 340
+ R+ DG ++Q+
Sbjct: 297 TGFAHMRICDGVGSFLQL 314
>gi|344303413|gb|EGW33662.1| hypothetical protein SPAPADRAFT_59031 [Spathaspora passalidarum
NRRL Y-27907]
Length = 324
Score = 204 bits (520), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 121/325 (37%), Positives = 184/325 (56%), Gaps = 20/325 (6%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
++G +PWVEKYRP + D++ +E V LK ++P+ + G PG GKT+++
Sbjct: 2 STGTKVTLELPWVEKYRPYKLQDIVGNEETVERLKIIAKDGNMPNMIISGLPGIGKTTSV 61
Query: 84 IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIV 141
H+L G+ Y + LELNASDDRGI V+R+K+K FAQ PP KI+
Sbjct: 62 HCLAHELLGEYYHQATLELNASDDRGIDVVRNKIKQFAQTKIV--------LPPGRHKII 113
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEADSMT AQ ALRRTME + STRF CN S II+PL SRC+ R+ LA+ +
Sbjct: 114 ILDEADSMTPGAQQALRRTMEIYSNSTRFAFACNQSSKIIEPLQSRCAILRYNKLADEEV 173
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVT 260
L RL I + E V + + L+ L+ T+ GDMR+AI LQS G G VN+ +V ++
Sbjct: 174 LARLLEIAKMEEVKYNSEGLQALIFTAEGDMRQAINNLQSTV---AGFGFVNDVNVFKIV 230
Query: 261 GVIPNPWIEK--LLKVDSFQVLEKYIE---DLILEAYSATQLFDQFHDIVMSASSLSDKQ 315
P+P + + LL + L+K +E L + YSA + + + ++++
Sbjct: 231 DQ-PHPLVIQNILLSCVKDKDLDKAMELLDSLWSKGYSAIDIVTSTFKVAKTIPDINEQT 289
Query: 316 KALILEKLAECNARLQDGASEYIQI 340
+ +++++ + R+ +G S Y+Q+
Sbjct: 290 RLDVIKEIGFVHMRILEGVSTYLQL 314
>gi|156083805|ref|XP_001609386.1| replication factor C subunit 4 [Babesia bovis T2Bo]
gi|154796637|gb|EDO05818.1| replication factor C subunit 4 [Babesia bovis]
Length = 306
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 117/289 (40%), Positives = 175/289 (60%), Gaps = 24/289 (8%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP + DVI EV L+ ++P+ L GPPGTGKT++++ H++ G+
Sbjct: 6 WIEKYRPGILKDVIGNPEVTRRLEVIAREGNMPNLLLCGPPGTGKTTSILCLAHEMLGNH 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTHA 152
++ +LELNASDDRG+ V+R +K FA+++ PP KI+ILDE DSMT A
Sbjct: 66 FKNAVLELNASDDRGVDVVRGAIKNFAKKSVV--------LPPNKHKIIILDEVDSMTEA 117
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR ME +K+TRF L CN + II+P+ SRC+ R++PL + +LTRL +IC++E
Sbjct: 118 AQQALRRIMEIYSKTTRFALACNQSTKIIEPIQSRCAVIRYEPLQDEMILTRLIHICKEE 177
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-WIEKL 271
+V +E L+ T+ GDMRRA+ LQ+ + G I +++V +V V P+P I KL
Sbjct: 178 NVQYTNDGMEALLFTANGDMRRAVNNLQNVS--SGYNLITSQNVYKVCDV-PSPELIRKL 234
Query: 272 LK--VDS-FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKA 317
L+ +D ++ + EDL+ +S DI+M+ S+ KA
Sbjct: 235 LQDCLDGQWRPAHEKAEDLLALGHSP-------FDILMTVRSVLKTLKA 276
>gi|294654838|ref|XP_456919.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
gi|199429188|emb|CAG84897.2| DEHA2A13574p [Debaryomyces hansenii CBS767]
Length = 327
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 119/320 (37%), Positives = 187/320 (58%), Gaps = 19/320 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DD++ +E V LK + ++PH + G PG GKT+++ ++L G
Sbjct: 11 LPWVEKYRPHKLDDIVGNEETVERLKLLVEDGNMPHMIISGLPGIGKTTSIHCLAYELLG 70
Query: 93 -DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
++Y++ LELNASDDRGI V+R+K+K FAQ S P KI+ILDEADSMT
Sbjct: 71 PELYQQATLELNASDDRGIDVVRNKIKQFAQTKIS------LPAGRHKIIILDEADSMTP 124
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME + +TRF CN S II+PL SRC+ R+ L++ +L RL + +
Sbjct: 125 GAQQALRRTMEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYTKLSDEQVLERLLEVTKL 184
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE-DVLEVTGVIPNPW-IE 269
E V + + L+ L+ T+ GDMR+AI LQS G G VN+ +V ++ P+P I+
Sbjct: 185 EDVKYNSEGLQALIFTAEGDMRQAINNLQSTV---AGFGFVNDINVFKIVDQ-PHPLVIK 240
Query: 270 KLL------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 323
K+L K + + +++L + YSA + + + +S+ ++ +++++
Sbjct: 241 KILASCCSNKGGNIDEALELLDNLWEKGYSAIDIVTSSFRVAKTLPGISESKRLDMIKEI 300
Query: 324 AECNARLQDGASEYIQILDL 343
+ R+ +G S Y+Q+ L
Sbjct: 301 GFVHMRVLEGVSSYLQLCGL 320
>gi|396495754|ref|XP_003844622.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
gi|312221202|emb|CBY01143.1| similar to replication factor C subunit 3 [Leptosphaeria maculans
JN3]
Length = 409
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 100/211 (47%), Positives = 141/211 (66%), Gaps = 4/211 (1%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM- 94
VEKYRP ++DDV Q++++ + K + LPH L YGPPGTGKTST++A +++G+
Sbjct: 62 VEKYRPNSLDDVEGHQDIIATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARRIYGNKN 121
Query: 95 YRERILELNASDDRGIQVIRDKVKTFA--QQTASGFNQDGKPC-PPFKIVILDEADSMTH 151
R+ +LELNASDDRGI V+R+++KTF+ +Q S + G FK++ILDEAD+MT
Sbjct: 122 MRQMVLELNASDDRGIDVVREQIKTFSSTKQIFSAAPKAGDTALATFKLIILDEADAMTA 181
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRR MEK T +TRFC+I NY + L SRC++FRF PL + + + + E+
Sbjct: 182 TAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKDQDIRNLVDKVIEE 241
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSC 242
E+V A ++LV S GDMRRA+ LQ+C
Sbjct: 242 ENVNITQDATDSLVSLSKGDMRRALNVLQAC 272
>gi|84489225|ref|YP_447457.1| replication factor C small subunit [Methanosphaera stadtmanae DSM
3091]
gi|110287813|sp|Q2NH89.1|RFCS_METST RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|84372544|gb|ABC56814.1| RfcS [Methanosphaera stadtmanae DSM 3091]
Length = 321
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 116/314 (36%), Positives = 180/314 (57%), Gaps = 17/314 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+DDV+ Q+++V LK+ + LP+ +F G G GKT+ +A L G+
Sbjct: 4 PWVEKYRPQTLDDVVGQEQIVGRLKRYVEEKSLPNIMFTGFAGVGKTTCALALAKSLLGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+++ LELNASD RGI +R+++K+F + A G PF+I+ LDE D+MT A
Sbjct: 64 YWQQNFLELNASDARGIDTVRNEIKSFCKLKAVG--------APFRIIFLDEVDNMTKDA 115
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF P+ ++ RL+YI +E
Sbjct: 116 QQALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFSPIKAANIIKRLKYIASEEG 175
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQ-SCARLKGGEGIVNEDVLEVTGVIPN---PWIE 269
+ + ALE +V + GDMR++I LQ S DV ++ P I
Sbjct: 176 IEAEQSALENIVYFTQGDMRKSINILQASTTTENTVTEEAVYDV--ISRAKPKDVRKIIN 233
Query: 270 KLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIV--MSASSLSDKQKAL-ILEKLAEC 326
K L D + + + +I+E S L QF+ V M+ L + + + ++E ++EC
Sbjct: 234 KALNHDFMEARDLLRDIMIIEGVSGDDLITQFYQEVAQMTQEELIPEVEFIKLMEYMSEC 293
Query: 327 NARLQDGASEYIQI 340
+ R+++G++ +Q+
Sbjct: 294 DYRIREGSNPRLQL 307
>gi|407837802|gb|EKF99863.1| replication factor C, subunit 4, putative [Trypanosoma cruzi]
Length = 340
Score = 204 bits (519), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 185/337 (54%), Gaps = 22/337 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRPK+++D++ + VS L+ +LP+ L GPPGTGKT++++ L
Sbjct: 6 VPWVEKYRPKSMEDIVGNADAVSRLRVISKEGNLPNLLLCGPPGTGKTTSVLCLARTLLS 65
Query: 93 DM-------YRERILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQDGK-PCPPFKIV 141
D +E +LELNASDDRG+ V+R+K+K FAQ + N+ + KIV
Sbjct: 66 DQDGGDTTALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVNESSQQKINLHKIV 125
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEADSMT AAQ ALRRTME + +TRF CN II+P+ SRC+ RFK L +
Sbjct: 126 ILDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLTHADI 185
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVT 260
L RL YI +QE+V LE L+ + GD+R A+ LQ+ + G G+VN E+V +V
Sbjct: 186 LKRLTYIIQQENVTYTDDGLEALLYLAEGDLRSAVNALQAT---QSGYGMVNAENVFKVC 242
Query: 261 GVIPNPWI-----EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 315
P+P + + L+ K ++ L+ Y+A+ + F + ++Q
Sbjct: 243 DQ-PHPLLVESIMDGCLQKKDLPSAHKELQRLLGRGYAASDVISTFFRTAQNPKLFRNEQ 301
Query: 316 KAL-ILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
+ L +L + E R+ +G +Q+ + + + N
Sbjct: 302 QQLTVLRIIGETTMRIAEGVGTPLQLASMLARITMVN 338
>gi|452846354|gb|EME48287.1| hypothetical protein DOTSEDRAFT_147627 [Dothistroma septosporum
NZE10]
Length = 352
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 124/336 (36%), Positives = 183/336 (54%), Gaps = 20/336 (5%)
Query: 12 KDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLF 71
KDA S+ + +T+ + N +PWVEKYRP +DD++ E + LK ++PH +
Sbjct: 8 KDAESNGVKANATAS-SANYELPWVEKYRPVFLDDIVGNTETIERLKIIAKDGNMPHVII 66
Query: 72 YGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131
G PG GKT++++ QL G Y+E +LELNASD+RGI V+R+++K FAQ+ +
Sbjct: 67 SGMPGIGKTTSVLCLARQLLGAAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT----- 121
Query: 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
P KIVILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+
Sbjct: 122 -LPAGRQKIVILDEADSMTSGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAIL 180
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + ++ RL I + E V + LV ++ GDMR+AI LQS G G
Sbjct: 181 RYARLTDGQVVKRLYQIAKAEGVEYSDDGIAALVFSAEGDMRQAINNLQST---HAGFGF 237
Query: 252 VNEDVLEVTGVIPNPW-IEKLL------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDI 304
VN D + P+P ++ ++ KVD K + DL YS+ + +
Sbjct: 238 VNGDNVFRVVDSPHPIKVQGMIRSCQDSKVDEALDSLKELWDL---GYSSHDIISTMFKV 294
Query: 305 VMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
S SLS+ K + ++ + R+ +G Y+Q+
Sbjct: 295 TKSIPSLSEHTKLEFIREIGFTHMRILEGMQTYLQL 330
>gi|124485340|ref|YP_001029956.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
gi|158512813|sp|A2SQT3.1|RFCS_METLZ RecName: Full=Replication factor C small subunit; Short=RFC small
subunit; AltName: Full=Clamp loader small subunit
gi|124362881|gb|ABN06689.1| replication factor C small subunit [Methanocorpusculum labreanum Z]
Length = 321
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 113/323 (34%), Positives = 180/323 (55%), Gaps = 13/323 (4%)
Query: 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91
P W+EKYRPK + +V+ QQ+VV L+ ++ LPH LF G G GKT+ +A ++F
Sbjct: 5 PEIWIEKYRPKNLAEVVGQQDVVERLRSYVATKALPHLLFTGSAGVGKTTCAVALAREMF 64
Query: 92 GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
GD + ELNASD+RGI V+R+++K FA+ G FKI+ LDEAD++T
Sbjct: 65 GDTWNMNFRELNASDERGIDVVRNQIKQFARTAPLG-------DATFKILFLDEADALTQ 117
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQAALRRTME ++ RF L CNY S II P+ SRC+ +RF+PL + + + I ++
Sbjct: 118 DAQAALRRTMENYAETCRFILSCNYSSKIIDPIQSRCAIYRFRPLTDEAISEEIARIAKK 177
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL 271
E + D A + S GDMR+AI LQ A + + + E++ +T I L
Sbjct: 178 EGITIDEGAYVAITYVSLGDMRKAINALQGAAIV--SDHVTAENIYAITSNAKPQEITDL 235
Query: 272 LKV---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
L F+ E+ + L+ + + +L +Q + + + +L + K +++ L E +
Sbjct: 236 LARCLEGDFETAERMLHALMYDKGIAPNELLNQLYREISRSETLDRRLKVDLIDHLGEAD 295
Query: 328 ARLQDGASEYIQILDLGSIVIKA 350
R+ +GA IQ+ L + ++++
Sbjct: 296 FRMSEGADADIQMDALLARIVRS 318
>gi|226493143|ref|NP_001149058.1| LOC100282678 [Zea mays]
gi|195624372|gb|ACG34016.1| replication factor C subunit 4 [Zea mays]
Length = 331
Score = 204 bits (519), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 126/318 (39%), Positives = 179/318 (56%), Gaps = 26/318 (8%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + DV+ + V+ L+ ++P+ + GPPGTGKT++++A H+L G
Sbjct: 13 IPWVEKYRPSRVADVVGNSDAVARLEVIARDGNMPNLILSGPPGTGKTTSILALAHELLG 72
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR+ +LELNASDDRG+ V+R+K+K FAQ+ + Q G+ KIVILDEADSMT
Sbjct: 73 PSYRDAVLELNASDDRGLDVVRNKIKMFAQKKVT--LQPGR----HKIVILDEADSMTSG 126
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L++ +L RL + E
Sbjct: 127 AQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMIVVAAE 186
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
V + LE ++ T+ GDMR+A+ LQ A G I E+V +V P+P K +
Sbjct: 187 KVPYAPEGLEAIIFTADGDMRQALNNLQ--ATFSGFRFINQENVFKVCDQ-PHPLHVKNM 243
Query: 273 -------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
K D K + DL YS T + +V + D + L LE L E
Sbjct: 244 VKNVLDGKFDEPCSALKQLYDL---GYSPTDIITTLFRVVKN----YDMAEYLKLEMLKE 296
Query: 326 ---CNARLQDGASEYIQI 340
+ R+ DG ++Q+
Sbjct: 297 TGFAHMRICDGVGSFLQL 314
>gi|451927566|gb|AGF85444.1| replication factor C small subunit [Moumouvirus goulette]
Length = 346
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 121/322 (37%), Positives = 173/322 (53%), Gaps = 18/322 (5%)
Query: 16 SSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPP 75
S +T + + K + K +PW EKYRP ID +I +E+ LK + LPH LF+GP
Sbjct: 2 SYYETVLDKNEKGKQKNIPWTEKYRPHDIDQIISHKEITRSLKNFIKSKTLPHLLFFGPS 61
Query: 76 GTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPC 135
G+GKTST+ +L+G IL+LNAS++RGI+ +R K+K F S F P
Sbjct: 62 GSGKTSTIKCCAAKLYGSYINCMILQLNASNERGIETVRTKIKNFVSNKNSIF----LPV 117
Query: 136 P---PFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
FK+VILDE DSMT AQ LR+T+EK + +TRFCLICN + I L SRC+ FR
Sbjct: 118 ELRNIFKLVILDEIDSMTVEAQGMLRQTIEKNSSTTRFCLICNDIDKINLALQSRCALFR 177
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F PL N M RL+ IC E+V ++ ++ S GDMR AI LQ L + I
Sbjct: 178 FSPLNNNEMHKRLKDICNIENVKHSKGVIDAIINISKGDMRSAINTLQH-VNLTINDLIT 236
Query: 253 NEDVLEVTGVIPNPWIEKLLKV-----DSFQVLEKYIEDLIL----EAYSATQLFDQFHD 303
DV +++G I ++ V + L+KY++ +I + L + +
Sbjct: 237 VNDVYKISGHCMPELILEIFNVLLELSKKKKYLDKYVDKIINIVVENNITIFNLLSELKN 296
Query: 304 IVMSASSLSDKQKALILEKLAE 325
IV+ S L D QK +++ A+
Sbjct: 297 IVLD-SDLLDDQKIFLIDNFAK 317
>gi|256090013|ref|XP_002581023.1| replication factor C / DNA polymerase III gamma-tau subunit
[Schistosoma mansoni]
Length = 245
Score = 204 bits (518), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 105/206 (50%), Positives = 141/206 (68%), Gaps = 7/206 (3%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
+EKYRP +I+D+I ++ +K+ + LPH LFYGPPGTGKTST++AA +L+ +
Sbjct: 5 IEKYRPSSIEDLISHDDISKTIKRFIDNDRLPHLLFYGPPGTGKTSTILAAAKRLYSRQF 64
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQA 155
+LELNASDDRGI V+R++V +FA T + F GK FK+VILDEADSMT AQ
Sbjct: 65 SSMVLELNASDDRGIDVVREQVLSFAS-TKTLFA--GK----FKLVILDEADSMTKDAQN 117
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
ALRR +EK T++TRFCLICNY+S II + SRC+KFRF PLA N + T L+ I E V
Sbjct: 118 ALRRIIEKFTENTRFCLICNYLSKIIPAIQSRCTKFRFAPLAFNDVSTCLRKIASNEGVD 177
Query: 216 CDFKALETLVETSGGDMRRAITCLQS 241
++ + + + GDMR++I LQS
Sbjct: 178 LTDDGIKAIYQFASGDMRKSINLLQS 203
>gi|452981800|gb|EME81559.1| hypothetical protein MYCFIDRAFT_188590 [Pseudocercospora fijiensis
CIRAD86]
Length = 367
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 142/216 (65%), Gaps = 6/216 (2%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++ DV Q++++ + K + LPH L YGPPGTGKTST++A +++G
Sbjct: 44 LPWVEKYRPNSLSDVSGHQDILATINKFVDSNRLPHLLLYGPPGTGKTSTVLALARKIYG 103
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGK--PCPPFKIVILDEA 146
+ R+ +LELNASDDRGI V+R+++KTF+ Q A F++ + +K++ILDEA
Sbjct: 104 NKNMRQMVLELNASDDRGIDVVREQIKTFSSTKQIFAGSFDKSKQDDSMATYKLIILDEA 163
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR ME+ T +TRFC+I NY + L SRC++FRF PL E + +
Sbjct: 164 DAMTSTAQMALRRIMERYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEPDIRRLVD 223
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242
+ +E V A ++LV S GDMRRA+ LQ+C
Sbjct: 224 KVIIEEGVNIASDATDSLVTLSKGDMRRALNVLQAC 259
>gi|339898595|ref|XP_003392626.1| putative replication factor C, subunit 4 [Leishmania infantum
JPCM5]
gi|321398414|emb|CBZ08802.1| putative replication factor C, subunit 4 [Leishmania infantum
JPCM5]
Length = 360
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 125/353 (35%), Positives = 190/353 (53%), Gaps = 41/353 (11%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF-- 91
PWVEKYRP+T+ D++ E +S L+ +LP+ L GPPGTGKT++M+ L
Sbjct: 7 PWVEKYRPQTVADIVGNTEAISRLQVIAKEGNLPNLLLCGPPGTGKTTSMLCLARDLLLQ 66
Query: 92 ---------------GDMYRERILELNASDDRGIQVIRDKVKTFAQ----------QTAS 126
D+ ++ +LELNASDDRG+ V+R+K+K FAQ T
Sbjct: 67 STDTGSAGASPGGATKDILKDAVLELNASDDRGLDVVREKIKLFAQTKKTLPRKFFSTGE 126
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
G +D KIV+LDEADSMT AAQ ALRRTME + +TRF CN S II+P+ S
Sbjct: 127 GVAKDDHVVHLHKIVLLDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSSRIIEPIQS 186
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246
RC+ RFK L++ +L RL Y+ +QE+V LE L+ + GD+R+A+ LQ+
Sbjct: 187 RCAVVRFKKLSDADILKRLVYVIQQENVSYTDDGLEALLYLAEGDLRQALNALQAT---H 243
Query: 247 GGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIED-------LILEAYSATQLFD 299
G G+VN D + P+P + + V + V ++ IE+ L+ Y+ +
Sbjct: 244 TGYGLVNADNVFKVCDQPHPLLVE--NVITACVTKRNIEEAHREMNRLLNRGYAPVDVIA 301
Query: 300 QFHDIVMSASSL--SDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350
F +V + + L S+ Q+ +L+ + E R+ +G +Q+ + + +I A
Sbjct: 302 TFFKVVQTNARLFRSELQQLEVLKIVGETTMRIAEGVGTPLQLAAMLARMIAA 354
>gi|392575134|gb|EIW68268.1| hypothetical protein TREMEDRAFT_44679 [Tremella mesenterica DSM
1558]
Length = 346
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 124/346 (35%), Positives = 187/346 (54%), Gaps = 26/346 (7%)
Query: 11 GKDAPSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFL 70
GKD S+ + G +PWVEKYRP +DD++ + V LK ++PH +
Sbjct: 7 GKDNISAIAKHIDAEGYE----MPWVEKYRPVLLDDIVGNTDTVERLKVIAEDGNVPHII 62
Query: 71 FYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130
G PG GKT+++ H L G+ Y+E +LELNASD+RGI V+R+K+K+FAQ+ +
Sbjct: 63 ISGMPGIGKTTSIHCLAHALLGESYKEGVLELNASDERGIDVVRNKIKSFAQRKVT---- 118
Query: 131 DGKPCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRC 188
PP KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC
Sbjct: 119 ----LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRC 174
Query: 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG 248
+ R+ L + +L RL+ +CE E V + L L+ T+ GDMR+AI LQS G
Sbjct: 175 AILRYSKLKDAEVLKRLKELCEMEDVKHNDAGLSALIFTAEGDMRQAINNLQST---HSG 231
Query: 249 EGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLE-----KYIEDLILEAYSATQLFDQFHD 303
G V++D + P+P + + + + + Q E I +L + YSA +
Sbjct: 232 FGFVSQDNVFKICDQPHPIVVRHM-IKACQKGEIDDALARINELWDQGYSAVDIVTTVFR 290
Query: 304 IVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
+ L + K + ++ + R+ +G +Q LG++V +
Sbjct: 291 VTKGMEELPEVLKLDYIREIGWTHMRILEGVGTLVQ---LGAMVAR 333
>gi|308159615|gb|EFO62141.1| Replication factor C, sub 2 [Giardia lamblia P15]
Length = 351
Score = 204 bits (518), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 104/258 (40%), Positives = 155/258 (60%), Gaps = 20/258 (7%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PW EK+RP ++D V+ Q V K+C+ ++PH L YGP GTGKT+ + A H+ FG
Sbjct: 4 PWTEKHRPMSLDRVMHQDHAVRAAKRCIESGNMPHMLLYGPAGTGKTTLIHAMMHEFFGP 63
Query: 94 -MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK---PCPPFKIVILDEADSM 149
+R R+ E NAS DRGI+++R+++K+ A+ + D K PCP F+++ILDEAD++
Sbjct: 64 RFWRARVNEFNASTDRGIKIVRERIKSIARTVIAVAPDDVKAVYPCPDFQVIILDEADAL 123
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T +QAALRR +E +++TRFC+ICNY S II P+ SRC++F F L ++ ++ RL+ IC
Sbjct: 124 TRESQAALRRIIEDFSETTRFCIICNYPSQIIAPIVSRCARFAFSSLPQSLIIDRLEAIC 183
Query: 210 EQESVMCDFK------------ALETLVETSGGDMRRAITCLQSCARL--KGGEGIVNED 255
E M + AL + S GDMR AIT LQ+ + GE + +
Sbjct: 184 YAE--MHQLRNANEKLSSSASEALGEVATLSQGDMRAAITLLQATVQFCQNMGEELSPKH 241
Query: 256 VLEVTGVIPNPWIEKLLK 273
V + G IP+ I L++
Sbjct: 242 VYLLAGKIPDELIASLIE 259
>gi|299756140|ref|XP_001829123.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130]
gi|298411540|gb|EAU92758.2| replication factor C subunit 4 [Coprinopsis cinerea okayama7#130]
Length = 323
Score = 204 bits (518), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 122/315 (38%), Positives = 175/315 (55%), Gaps = 19/315 (6%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95
VEKYRP+ +DD++ + + LK + PH + G PG GKT+++ HQL GD Y
Sbjct: 5 VEKYRPQVLDDIVGNTDTIERLKVIARDGNCPHLIISGMPGIGKTTSIHCLAHQLLGDAY 64
Query: 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTHAA 153
+E +LELNASD+RGI V+R+K+K FAQ+ + PP KI+ILDEADSMT A
Sbjct: 65 KEGVLELNASDERGIDVVRNKIKAFAQKKVT--------LPPGRHKIIILDEADSMTPGA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME + +TRFCL CN + II+P+ SRC+ R+ L + +L RL ICE E
Sbjct: 117 QQALRRTMEIFSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEVLKRLLEICEMEK 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WI 268
V + L L+ T+ GDMR+AI LQS G G V+ D + P+P I
Sbjct: 177 VQYNDDGLTALIFTAEGDMRQAINNLQST---HSGFGFVSADNVFKVCDQPHPIVVQSMI 233
Query: 269 EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
LK + LEK + +L + YSA + +V + + + K ++++ +
Sbjct: 234 RACLKGEIDPALEK-LHELWDQGYSAVDIVVTLFRVVKTFDDMPEYTKLEYIKEIGFTHM 292
Query: 329 RLQDGASEYIQILDL 343
R+ +G IQ+ L
Sbjct: 293 RILEGVGTLIQLAGL 307
>gi|326512276|dbj|BAJ96119.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 335
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 122/320 (38%), Positives = 181/320 (56%), Gaps = 24/320 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP + DV+ + VS L+ ++P+ + GPPGTGKT++++A H++ G
Sbjct: 18 IPWVEKYRPSRVADVVGNADAVSRLEVIARDGNMPNLILSGPPGTGKTTSILALAHEMLG 77
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
YRE +LELNASDDRG+ V+R+K+K FAQ+ + PP KIVILDEADSMT
Sbjct: 78 PSYREGVLELNASDDRGLDVVRNKIKMFAQKKVT--------LPPGRHKIVILDEADSMT 129
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ ALRRTME + +TRF L CN S II+P+ SRC+ RF L++ +L RL +
Sbjct: 130 TGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMVVVA 189
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
E V + LE ++ T+ GDMR+A+ LQ A + G + E+V +V P+P K
Sbjct: 190 AEKVPYVPEGLEAIIFTADGDMRQALNNLQ--ATVSGFRFVNQENVFKVCDQ-PHPLHVK 246
Query: 271 LL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKL 323
+ K D K + DL YS T + ++ + +++ K +L++
Sbjct: 247 SMVKNVLDGKFDEACSGLKQLYDL---GYSPTDIITTLFRVIKN-YDMAEFLKLELLKET 302
Query: 324 AECNARLQDGASEYIQILDL 343
+ R+ DG ++Q+ L
Sbjct: 303 GFAHMRICDGVGSFLQLSGL 322
>gi|71004420|ref|XP_756876.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
gi|46095885|gb|EAK81118.1| hypothetical protein UM00729.1 [Ustilago maydis 521]
Length = 343
Score = 203 bits (517), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 117/315 (37%), Positives = 183/315 (58%), Gaps = 19/315 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +DDV+ ++ + LK + PH L G PG GKT++++ L G
Sbjct: 22 LPWVEKYRPLRLDDVVGNKDTIDRLKVIQKDGNCPHLLISGLPGIGKTTSVLCLARALLG 81
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMT 150
+ Y+E +LELNASD+RG+ V+R+K+KTFAQ+ S PP KI+ILDEADSMT
Sbjct: 82 EAYKEGVLELNASDERGVDVVRNKIKTFAQKKVS--------LPPGRHKIIILDEADSMT 133
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AAQ ALRRTME + +TRFC CN + II+P+ SRC+ R+ + + +L RL ICE
Sbjct: 134 PAAQQALRRTMEIYSNTTRFCFACNQSNKIIEPIQSRCAILRYAKVRDEHILKRLLEICE 193
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270
E+V + L ++ T+ GDMR+AI LQS G G V+ D + P+P++ +
Sbjct: 194 MENVEYSDEGLAAIIFTTEGDMRQAINNLQSTWT---GLGFVSPDNVFKVCDQPHPFLIR 250
Query: 271 --LLKVDSFQV---LEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
LL V LEK ++++ + Y+A + +V + ++ + K ++++
Sbjct: 251 SILLACKDGHVDEALEK-LDEISSKGYAAVDIVTTLFRVVKTLDAIPEATKLDFIKEIGW 309
Query: 326 CNARLQDGASEYIQI 340
+ ++ +G + +Q+
Sbjct: 310 THIKILEGVATLVQL 324
>gi|71654812|ref|XP_816018.1| replication factor C, subunit 4 [Trypanosoma cruzi strain CL
Brener]
gi|70881118|gb|EAN94167.1| replication factor C, subunit 4, putative [Trypanosoma cruzi]
Length = 340
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 184/337 (54%), Gaps = 22/337 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRPK+++D++ + VS L+ +LP+ L GPPGTGKT++++ L
Sbjct: 6 VPWVEKYRPKSMEDIVGNADAVSRLRVISKEGNLPNLLLCGPPGTGKTTSVLCLARTLLS 65
Query: 93 DM-------YRERILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQDGK-PCPPFKIV 141
D +E +LELNASDDRG+ V+R+K+K FAQ + N+ + KIV
Sbjct: 66 DQDGGDTTALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVNESSQQKINLHKIV 125
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEADSMT AAQ ALRRTME + +TRF CN II+P+ SRC+ RFK L +
Sbjct: 126 ILDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLTHADI 185
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVT 260
L RL YI +QE+V LE L+ + GD+R A+ LQ+ G G+VN E+V +V
Sbjct: 186 LKRLTYIIQQENVTYTDDGLEALLYLAEGDLRSAVNALQAT---HSGYGMVNAENVFKVC 242
Query: 261 GVIPNPWI-----EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 315
P+P + + L+ K ++ L+ Y+A+ + F + ++Q
Sbjct: 243 DQ-PHPLLVESIMDGCLQKKDLPSAHKELQRLLGRGYAASDVISTFFRTAQNPKLFRNEQ 301
Query: 316 KAL-ILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
+ L +L + E R+ +G +Q+ + + + N
Sbjct: 302 QQLAVLRIIGETTMRIAEGVGTPLQLASMLARITMVN 338
>gi|407399789|gb|EKF28431.1| replication factor C, subunit 4, putative [Trypanosoma cruzi
marinkellei]
Length = 340
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 123/337 (36%), Positives = 184/337 (54%), Gaps = 22/337 (6%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
VPWVEKYRPK+++D++ + VS L+ +LP+ L GPPGTGKT++++ L
Sbjct: 6 VPWVEKYRPKSMEDIVGNADAVSRLRVISKEGNLPNLLLCGPPGTGKTTSVLCLARTLLS 65
Query: 93 DM-------YRERILELNASDDRGIQVIRDKVKTFAQQTAS---GFNQDGK-PCPPFKIV 141
D +E +LELNASDDRG+ V+R+K+K FAQ + N+ + KIV
Sbjct: 66 DQDGGDTTALKEAVLELNASDDRGLDVVREKIKLFAQTKKTLPQKVNESSQQKMNLHKIV 125
Query: 142 ILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
ILDEADSMT AAQ ALRRTME + +TRF CN II+P+ SRC+ RFK L +
Sbjct: 126 ILDEADSMTPAAQQALRRTMELHSSTTRFAFACNNSHKIIEPIQSRCAVVRFKKLTHADI 185
Query: 202 LTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVT 260
L RL YI +QE+V LE L+ + GD+R A+ LQ+ G G+VN E+V +V
Sbjct: 186 LKRLTYIIQQENVTYTDDGLEALLYLAEGDLRSAVNALQAT---HSGYGMVNAENVFKVC 242
Query: 261 GVIPNPWI-----EKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 315
P+P + + L+ K ++ L+ Y+A+ + F + ++Q
Sbjct: 243 DQ-PHPLLVESIMDGCLQKKDLPSAHKELQRLLGRGYAASDVISTFFRTAQNPKLFRNEQ 301
Query: 316 KAL-ILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351
+ L +L + E R+ +G +Q+ + + + N
Sbjct: 302 QQLAVLRIIGETTMRIAEGVGTPLQLASMLARITMVN 338
>gi|296419853|ref|XP_002839506.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295635667|emb|CAZ83697.1| unnamed protein product [Tuber melanosporum]
Length = 358
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 123/333 (36%), Positives = 185/333 (55%), Gaps = 24/333 (7%)
Query: 17 SSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPG 76
++ + +TSG T +PWVEKYRP ++D++ E V LK ++PH + G PG
Sbjct: 15 AATVATNTSG-TPAYELPWVEKYRPIFLEDIVGNSETVERLKIIGKDGNMPHLIISGMPG 73
Query: 77 TGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP 136
GKT++++ L GD Y+E +LELNASD+RGI V+R+++K FAQ+ + P
Sbjct: 74 IGKTTSVLCLARALLGDAYKEAVLELNASDERGIDVVRNRIKGFAQKKVT--------LP 125
Query: 137 PF--KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194
P K+VILDEADSMT AQ ALRRTME + +TRF CN + II+PL SRC+ R+
Sbjct: 126 PGRQKVVILDEADSMTAGAQQALRRTMEIYSSTTRFAFACNQSNKIIEPLQSRCAILRYS 185
Query: 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNE 254
L + +L RL IC E V + L L+ ++ GDMR+AI LQS G G V+
Sbjct: 186 RLTDAQVLHRLLEICLAEKVEHSEEGLAALIFSAEGDMRQAINNLQSTV---AGFGFVSA 242
Query: 255 DVLEVTGVIPNPWIEKLL-------KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS 307
D + P+P + L K+D+ LEK +E+L + YSA + + +
Sbjct: 243 DNVFKVVDSPHPIAVQALIKACYTGKIDA--ALEK-LEELWGKGYSAIDIISTMFRVTKT 299
Query: 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQI 340
+LS+ K ++ + + R+ +G + +Q+
Sbjct: 300 VDALSEHSKLEFIKVIGFTHMRILEGVATLLQL 332
>gi|19114033|ref|NP_593121.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|30913230|sp|O94449.1|RFC4_SCHPO RecName: Full=Replication factor C subunit 4; Short=Replication
factor C4
gi|4106657|emb|CAA22597.1| DNA replication factor C complex subunit Rfc4 (predicted)
[Schizosaccharomyces pombe]
Length = 342
Score = 203 bits (517), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 121/337 (35%), Positives = 186/337 (55%), Gaps = 22/337 (6%)
Query: 17 SSKTSVSTSGKTRNK---PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
S+ S S G+ N +PWVEKYRP +DD++ +E + LK ++PH + G
Sbjct: 2 SNAVSSSVFGEKNNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVISG 61
Query: 74 PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133
PG GKT++++ H L G Y+E +LELNASD+RGI V+R+++K FAQ+
Sbjct: 62 MPGIGKTTSILCLAHALLGPAYKEGVLELNASDERGIDVVRNRIKAFAQKKVI------- 114
Query: 134 PCPP--FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKF 191
PP KI+ILDEADSMT AQ ALRRTME + +TRF L CN + II+P+ SRC+
Sbjct: 115 -LPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAIL 173
Query: 192 RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251
R+ L + +L RL IC+ E V L L+ T+ GDMR+A+ LQS G G+
Sbjct: 174 RYSRLTDQQVLQRLLNICKAEKVNYTDDGLAALIMTAEGDMRQAVNNLQSTV---AGFGL 230
Query: 252 VN-EDVLEVTGVIPNP-WIEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306
VN E+V V P+P I +L + + V + ++ + +SA + +V
Sbjct: 231 VNGENVFRVADQ-PSPVAIHAMLTACQSGNIDVALEKLQGIWDLGFSAVDIVTNMFRVVK 289
Query: 307 SASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ S+ + + +L+++ + + + +G +Q+ L
Sbjct: 290 TMDSIPEFSRLEMLKEIGQTHMIILEGVQTLLQLSGL 326
>gi|145353045|ref|XP_001420841.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581076|gb|ABO99134.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 334
Score = 203 bits (517), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 121/318 (38%), Positives = 183/318 (57%), Gaps = 23/318 (7%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPKT+DD++ + V ++ + +P+ +F GPPG GKTS + +L G
Sbjct: 1 MPWVEKYRPKTLDDLVGNDDAVDRMRTMVRSGFMPNLIFSGPPGCGKTSAIGVLARELLG 60
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y+E +LE+NASD+RGI V+R+K+K FAQ+ + G+ K+VILDEADSMT A
Sbjct: 61 DKYKEAVLEMNASDERGIDVVRNKIKMFAQKKVT--LAPGRT----KLVILDEADSMTTA 114
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ A+RRTME + +TRF L CN +I+P+ SRC+ RF L + +L RL + E E
Sbjct: 115 AQQAMRRTMEIYSATTRFALACNTSEKVIEPIQSRCAIVRFGKLTDAQVLKRLMTVVEAE 174
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
V K LE +V T+ GDMR+A+ LQS A G G+VNE+ + P+P I +
Sbjct: 175 KVTYVPKGLEAIVFTADGDMRQALNNLQSTAL---GFGMVNEENVFRVCDQPHPNIVR-- 229
Query: 273 KVDSFQ-VLEKYIED-------LILEAYSATQLFDQFHDIV--MSASSLSDKQKALILEK 322
D+F +L+ ++D L + YS + + + +++ + K ++
Sbjct: 230 --DAFSFILQGNVDDAYARLKSLHDQGYSVFDIIGTMYRVCKNFDDTAMPEFIKLELIRI 287
Query: 323 LAECNARLQDGASEYIQI 340
+ + RL +G + IQI
Sbjct: 288 IGFTHLRLSEGCATMIQI 305
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,265,622,425
Number of Sequences: 23463169
Number of extensions: 212593950
Number of successful extensions: 750690
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7747
Number of HSP's successfully gapped in prelim test: 6512
Number of HSP's that attempted gapping in prelim test: 725579
Number of HSP's gapped (non-prelim): 16490
length of query: 355
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 212
effective length of database: 9,003,962,200
effective search space: 1908839986400
effective search space used: 1908839986400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)