BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17903
(355 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35249|RFC4_HUMAN Replication factor C subunit 4 OS=Homo sapiens GN=RFC4 PE=1 SV=2
Length = 363
Score = 396 bits (1017), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/358 (56%), Positives = 263/358 (73%), Gaps = 10/358 (2%)
Query: 1 MEAFLRTGKLGKDAPSSSKTSVSTSGKT-----RNKPVPWVEKYRPKTIDDVIEQQEVVS 55
M+AFL+ + P + V+ S + + KPVPWVEKYRPK +D+V Q+EVV+
Sbjct: 1 MQAFLKGTSISTKPPLTKDRGVAASAGSSGENKKAKPVPWVEKYRPKCVDEVAFQEEVVA 60
Query: 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIR 114
VLKK L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV+R
Sbjct: 61 VLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQVVR 120
Query: 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC 174
+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCLIC
Sbjct: 121 EKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLIC 180
Query: 175 NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234
NYVS II+PLTSRCSKFRFKPL++ RL I ++E+V + + LV+ S GD+R+
Sbjct: 181 NYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRK 240
Query: 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL---KVDSFQVLEKYIEDLILEA 291
AIT LQS RL GG+ I + + ++ GVIP I+ + + SF LE ++DLI E
Sbjct: 241 AITFLQSATRLTGGKEITEKVITDIAGVIPAEKIDGVFAACQSGSFDKLEAVVKDLIDEG 300
Query: 292 YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
++ATQL +Q HD+V+ ++LSDKQK++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 301 HAATQLVNQLHDVVVE-NNLSDKQKSIITEKLAEVDKCLADGADEHLQLISLCATVMQ 357
>sp|Q99J62|RFC4_MOUSE Replication factor C subunit 4 OS=Mus musculus GN=Rfc4 PE=1 SV=1
Length = 364
Score = 392 bits (1007), Expect = e-108, Method: Compositional matrix adjust.
Identities = 200/360 (55%), Positives = 262/360 (72%), Gaps = 13/360 (3%)
Query: 1 MEAFLR------TGKLGKDAPSSSKTSVSTSGKTRN-KPVPWVEKYRPKTIDDVIEQQEV 53
M+AFL+ +L KD + + +SG+T+ KPVPWVEKYRPK +D+V Q EV
Sbjct: 1 MQAFLKGTSVSAKAQLTKD--RGTPATAGSSGETKKVKPVPWVEKYRPKCVDEVAFQDEV 58
Query: 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQV 112
V+VL+K L GADLP+ LFYGPPGTGKTST++AA +LFG +++R R+LELNASD+RGIQV
Sbjct: 59 VAVLRKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPELFRLRVLELNASDERGIQV 118
Query: 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172
+R+KVK FAQ T SG DGKPCPPFKIVILDEADSMT AAQAALRRTMEKE+K+TRFCL
Sbjct: 119 VREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCL 178
Query: 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232
ICNYVS II+PLTSRCSKFRFKPL++ RL I E+E+V + + LV+ S GD+
Sbjct: 179 ICNYVSRIIEPLTSRCSKFRFKPLSDKIQQERLLDIAEKENVKIGNEEIAYLVKISEGDL 238
Query: 233 RRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLIL 289
R+AIT LQS RL GG+ + + + ++ GVIP I+ + SF LE +++LI
Sbjct: 239 RKAITFLQSATRLTGGKEVSEDVITDIAGVIPAATIDGIFTACHSGSFDKLEAVVKNLID 298
Query: 290 EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349
E ++ATQL +Q HD ++ +LSDK K++I EKLAE + L DGA E++Q++ L + V++
Sbjct: 299 EGHAATQLVNQLHDAIIENENLSDKHKSIITEKLAEVDKCLADGADEHLQLMSLCATVMQ 358
>sp|Q09843|RFC2_SCHPO Replication factor C subunit 2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc2 PE=1 SV=1
Length = 340
Score = 324 bits (831), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 169/338 (50%), Positives = 216/338 (63%), Gaps = 10/338 (2%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
AP + KT + K +PWVE YRPKT+D V Q+ V VLKK L +LPH LFYG
Sbjct: 5 APRNKKTE-----QEAKKSIPWVELYRPKTLDQVSSQESTVQVLKKTLLSNNLPHMLFYG 59
Query: 74 PPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PGTGKTST++A +LFG + + R+LELNASD+RGI +IR+KVK+FA+ T + DG
Sbjct: 60 SPGTGKTSTILALSRELFGPQLMKSRVLELNASDERGISIIREKVKSFAKTTVTN-KVDG 118
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
PCPPFKI+ILDEADSMT AQAALRRTME + TRFCLICNY++ II PL+SRCSK+R
Sbjct: 119 YPCPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYR 178
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
FKPL M+ RL++I ++V + + LVE SGGDMR+AIT LQS A L G I
Sbjct: 179 FKPLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPIT 238
Query: 253 NEDVLEVTGVIPNPWIEKLLK---VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS 309
V E+ G +P I LL + +E D+ E YS + Q HD+++
Sbjct: 239 ISSVEELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIILSQLHDVLLKEE 298
Query: 310 SLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIV 347
+LS K I KL+E + RL DGA E +Q+LDL S +
Sbjct: 299 TLSSPVKYKIFMKLSEVDKRLNDGADETLQLLDLLSSI 336
>sp|P40348|RFC2_YEAST Replication factor C subunit 2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC2 PE=1 SV=1
Length = 353
Score = 311 bits (798), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 159/321 (49%), Positives = 216/321 (67%), Gaps = 11/321 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 85
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 86 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 145
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL SRCSKFRFK L + + RL++I
Sbjct: 146 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASNAIDRLRFIS 205
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGVIPN 265
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV+P+
Sbjct: 206 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGVVPH 265
Query: 266 P-WIEKLLKVDS--FQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
IE + KV S F ++KY+ + +SA + +Q H+ ++ + K I
Sbjct: 266 DILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWL 325
Query: 323 LAECNARLQDGASEYIQILDL 343
L ++RL +G +E+IQ+L+L
Sbjct: 326 LFTTDSRLNNGTNEHIQLLNL 346
>sp|Q54MD4|RFC4_DICDI Probable replication factor C subunit 4 OS=Dictyostelium discoideum
GN=rfc4 PE=3 SV=1
Length = 347
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 150/325 (46%), Positives = 217/325 (66%), Gaps = 14/325 (4%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWV KYRPKT+DDV Q++V+S LKK L+ +LPH LFYGPPGTGKTST++A ++G
Sbjct: 11 PWVAKYRPKTVDDVSYQEDVISALKKSLNTGNLPHLLFYGPPGTGKTSTILAIAMDIYGP 70
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFA----QQTASGFNQDGKPCPPFKIVILDEADS 148
++ ++R+LELNASD+RGI+V+R K+K FA +T +G P FK++ILDEADS
Sbjct: 71 ELMKQRVLELNASDERGIEVVRTKIKNFAGYAVNKTTTG---TSNPGATFKLIILDEADS 127
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQAALRRT+E +K+TRFCL+CNY+S II PL SRC+KFRFKPL + RL++I
Sbjct: 128 MTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTVATIERLKFI 187
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL-EVTGVIPNPW 267
+QE + C+ + + S GDMR+AIT LQS R + ++EDV+ + G +P
Sbjct: 188 SQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANK--ISEDVIYNIAGSLPPQL 245
Query: 268 IEKLL---KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
I++L+ K +SF L+ ++ +I + Y +Q+ Q D V++ L+ QK+ I K+
Sbjct: 246 IKQLVDCCKKNSFDRLQSMVQSIIAQGYPVSQVISQLFDYVLTTKDLNQSQKSHITMKIG 305
Query: 325 ECNARLQDGASEYIQILDLGSIVIK 349
+ L DG+ E++Q+ DL S ++K
Sbjct: 306 NVDRNLIDGSEEFLQLFDLSSYIMK 330
>sp|P0C7N7|RFC2_PHANO Replication factor C subunit 2 OS=Phaeosphaeria nodorum (strain
SN15 / ATCC MYA-4574 / FGSC 10173) GN=RFC2 PE=3 SV=1
Length = 411
Score = 286 bits (733), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/378 (41%), Positives = 212/378 (56%), Gaps = 57/378 (15%)
Query: 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM 83
TS + N+ PWVEKYRPKT+ +V Q + +L + L ++LPH LFYGPPGTGKTST+
Sbjct: 24 TSKQESNRLQPWVEKYRPKTLSEVTAQDNTIQILSRTLQSSNLPHMLFYGPPGTGKTSTI 83
Query: 84 IAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFN---------- 129
+A QL+G ++ + R+LELNASD+RGI ++R KVK FA+Q A +N
Sbjct: 84 LALAKQLYGPELMKSRVLELNASDERGISIVRQKVKDFARQQLSVAPTYNVMTEDKDGGE 143
Query: 130 ------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
+D CPPFKI++LDEADSMT AQ+ALRRTME ++ TRFCL+CNYV+ II P
Sbjct: 144 AKMVRYRDKYSCPPFKIIVLDEADSMTQDAQSALRRTMETYSRMTRFCLVCNYVTRIIDP 203
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243
L SRCSKFRFK L + + R+ I + E V D E LV + GD+R+AIT LQS A
Sbjct: 204 LASRCSKFRFKSLDQGNAVRRVDDIAKLEDVKLDAGVSEELVRVADGDLRKAITFLQSAA 263
Query: 244 RLKGG----------------------------EGIVNEDVLEVTGVIPNPWIEKL---- 271
RL G I E + E+ GVIP P +
Sbjct: 264 RLVGATQTAGRKKKVVVDDEDEMDIDPPSAPSKTTISLEQIAEIAGVIPAPTLASFSDAL 323
Query: 272 -----LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
K + + K +E++I E +SA+Q Q ++ VM + D +K + +E
Sbjct: 324 FPKSAAKSIRYNEIAKVVENMIAEGWSASQTVSQLYEQVMFDERVEDIKKVRLAGVFSET 383
Query: 327 NARLQDGASEYIQILDLG 344
+ RL DG E++ +LDLG
Sbjct: 384 DKRLVDGGDEHLAVLDLG 401
>sp|Q975D3|RFCS_SULTO Replication factor C small subunit OS=Sulfolobus tokodaii (strain
DSM 16993 / JCM 10545 / NBRC 100140 / 7) GN=rfcS PE=3
SV=1
Length = 327
Score = 253 bits (646), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 133/313 (42%), Positives = 196/313 (62%), Gaps = 15/313 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRP+++DD++ Q+++V LK+ + ++PH LF GPPGTGKT+ +A H L+G
Sbjct: 7 ILWAEKYRPRSLDDIVNQKDIVERLKRFVKDKNMPHLLFSGPPGTGKTTAALALVHDLYG 66
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D YR+ LELNASD+RGI VIR+KVK FA+ A G PFK+V+LDEAD+MT
Sbjct: 67 DNYRQYFLELNASDERGIDVIRNKVKEFARTVAGG-------NVPFKVVLLDEADNMTAD 119
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL YI + E
Sbjct: 120 AQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVARLAYIAKNE 179
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKL- 271
V D KALET+ + + GDMR+AI LQ+ + + G + E V +V G+ I ++
Sbjct: 180 KVEYDQKALETIYDITQGDMRKAINILQASS-VYG--KVTVEAVYKVLGLAQPKEIREMI 236
Query: 272 ---LKVDSFQVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECN 327
L+ + + EK E L+ S + Q H ++ + ++ D K L+++ + E
Sbjct: 237 MLALQGNFLKAREKLRELLVNYGLSGEDIIKQIHREVTGNEINIPDDLKVLLVDYIGEVE 296
Query: 328 ARLQDGASEYIQI 340
R+ +GA + IQ+
Sbjct: 297 YRIMEGADDEIQL 309
>sp|Q9UXF5|RFCS_SULSO Replication factor C small subunit OS=Sulfolobus solfataricus
(strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=rfcS
PE=1 SV=1
Length = 330
Score = 248 bits (633), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 139/331 (41%), Positives = 199/331 (60%), Gaps = 16/331 (4%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + + W EKYRPKT+DD++ Q+E++ LKK + ++PH LF GPPGTGKT+ +A
Sbjct: 3 TKVEEILWAEKYRPKTLDDIVNQREIIDRLKKFVKEKNMPHLLFAGPPGTGKTTAALALV 62
Query: 88 HQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
H L+GD Y E LELNASD+RGI VIR+KVK FA+ G PFK+V+LDEAD
Sbjct: 63 HDLYGDNYTEYFLELNASDERGIDVIRNKVKEFARTVIPG-------DIPFKVVLLDEAD 115
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL Y
Sbjct: 116 NMTADAQQALRRTMELYTENTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIY 175
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW 267
I + E D KALET+ + + GDMR++I LQ+ + I E V +V G+
Sbjct: 176 IAKNEKAEYDQKALETIYDITMGDMRKSINILQAAS---AYGKISVEAVFKVLGLAQPKE 232
Query: 268 IEKLLKV---DSF-QVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEK 322
+ +++ + F Q +K LI S + Q H +I S +S++ + L+L+
Sbjct: 233 VREMINLALQGKFTQARDKLRTLLITYGLSGEDIVKQIHREITSSEIQISEELRVLLLDY 292
Query: 323 LAECNARLQDGASEYIQILD-LGSIVIKANK 352
+ E R+ +GA + IQ+ L + I NK
Sbjct: 293 IGETEFRIIEGADDEIQLSALLAKMAIYGNK 323
>sp|A3DNV9|RFCS_STAMF Replication factor C small subunit OS=Staphylothermus marinus
(strain ATCC 43588 / DSM 3639 / F1) GN=rfcS PE=3 SV=1
Length = 329
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 139/312 (44%), Positives = 191/312 (61%), Gaps = 17/312 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPKT+D++++Q+E+VS LK+ + ++PH LF GPPGTGKT+ H LFG+
Sbjct: 13 WAEKYRPKTLDEIVDQEEIVSRLKQFVKERNMPHLLFAGPPGTGKTTAAHCLAHDLFGEN 72
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI VIR KVK FA+ + PFKIV+LDEAD+MT AQ
Sbjct: 73 YRQYMLELNASDERGIDVIRSKVKEFARTRVAA-------NIPFKIVLLDEADNMTADAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME T +TRF LI NY S II+P+ SRC+ FRF PL + +++RL++I EQE V
Sbjct: 126 QALRRLMEMYTATTRFILIANYPSKIIEPIQSRCAVFRFAPLKKEDVISRLKWIAEQEKV 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLK 273
D +ALE + + S GDMRRAI LQ+ A L G V D V +V G+ I ++++
Sbjct: 186 EIDEEALEAIHDLSEGDMRRAINILQAAAAL----GKVTVDSVYKVVGLAHPREIRQMIQ 241
Query: 274 V----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNA 328
+ + EK E +I S + Q H + S + D+ K +I + E
Sbjct: 242 LALAGNFNDAREKLRELMINYGLSGVDVIKQVHREIFSTDIKIPDEFKIIIADLAGEIQF 301
Query: 329 RLQDGASEYIQI 340
RL +GA + IQ+
Sbjct: 302 RLVEGADDEIQL 313
>sp|O28219|RFCS_ARCFU Replication factor C small subunit OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rfcS PE=1 SV=1
Length = 319
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 134/311 (43%), Positives = 192/311 (61%), Gaps = 16/311 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+T+D+V+ Q EV+ LK + ++PH LF GPPGTGKT+T IA LFG+
Sbjct: 7 WVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ +E+NASD+RGI V+R K+K FA+ G PFKI+ LDEAD++T AQ
Sbjct: 67 WRDNFIEMNASDERGIDVVRHKIKEFARTAPIG-------GAPFKIIFLDEADALTADAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +KS RF L CNYVS II+P+ SRC+ FRFKP+ + M RL ICE+E V
Sbjct: 120 AALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
LE L+ SGGD R+AI LQ A + GE + + + ++T + +L++
Sbjct: 180 KITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATARPEEMTELIQT 237
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQ-FHDIVMSASSLSDKQKALILEKLAECNAR 329
+F + ++ L++E S + Q F +I+ + + D K +++KL E + R
Sbjct: 238 ALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREII--SMPIKDSLKVQLIDKLGEVDFR 295
Query: 330 LQDGASEYIQI 340
L +GA+E IQ+
Sbjct: 296 LTEGANERIQL 306
>sp|O74111|RFC3_BLAAD Replication factor C subunit 3 OS=Blastobotrys adeninivorans
GN=RFC3 PE=3 SV=1
Length = 338
Score = 241 bits (616), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/333 (41%), Positives = 191/333 (57%), Gaps = 34/333 (10%)
Query: 22 VSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTS 81
V T K N +PWVEKYRP T+D+V + V++ +KK + LPH LF+GPPGTGKT+
Sbjct: 7 VETVEKQENS-LPWVEKYRPTTLDEVAGHEGVITTIKKFVEEGKLPHLLFHGPPGTGKTT 65
Query: 82 TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA---QQTASGFNQDGKPCPPF 138
T+IA Q++G YR ILELNASD+RGI V+RD++KTFA Q +SG F
Sbjct: 66 TIIAVARQIYGKNYRNMILELNASDERGIDVVRDQIKTFASTRQIFSSG----------F 115
Query: 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAE 198
K+VILDEAD+MT+AAQ ALRR +EK + TRFC++ NY + L SRC++FRF PL E
Sbjct: 116 KLVILDEADAMTNAAQNALRRIIEKYSAHTRFCILANYTHKLNPALLSRCTRFRFSPLKE 175
Query: 199 NTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKGGEGIVNEDVL 257
+ + RL ++ EQESV +A ++L+ S GDMRRA+ LQ+C A + GE I E V
Sbjct: 176 DAIKHRLAHVIEQESVDLSPEAFQSLLHLSSGDMRRALNVLQACYASVDAGEQISEELVY 235
Query: 258 EVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS---------- 307
+ G P P D VL+ ++ A Q + ++
Sbjct: 236 DCVGS-PRP-------ADIRTVLQAVLDGSWESALHTFSYIKQSKGLALADMLTAFAVEF 287
Query: 308 -ASSLSDKQKALILEKLAECNARLQDGASEYIQ 339
L +K + +L+ L+E RL G +E IQ
Sbjct: 288 QKLDLQNKTRIALLDGLSEIEWRLSSGGNESIQ 320
>sp|A1RWU7|RFCS_THEPD Replication factor C small subunit OS=Thermofilum pendens (strain
Hrk 5) GN=rfcS PE=3 SV=1
Length = 325
Score = 241 bits (614), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 134/328 (40%), Positives = 196/328 (59%), Gaps = 19/328 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+++D++++Q+E+V LK+ + ++PH LF GPPGTGKT+ +A H L+G+
Sbjct: 6 WVEKYRPRSLDEIVDQEEIVKRLKEFVKNKNMPHLLFAGPPGTGKTTAALALAHDLYGES 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+R+ LELNASD+RGI VIR ++K +A+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRDNTLELNASDERGIDVIRSRIKDYARTLPIG-------DVPFKLVILDEADNMTGDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRRTME +++TRF LI NY S II+P+ SRC+ FRF+PL + RL++I +QE +
Sbjct: 119 QALRRTMELFSRNTRFILIANYASKIIEPIQSRCAVFRFQPLPKGDAFQRLRWIAQQEGI 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP----NPWIEK 270
D ALE + E S GD+R+AI LQ+ + + + E V G + IE
Sbjct: 179 TVDDGALEAIWEESQGDLRKAINTLQAASAI--SRNVTEEVVYAALGRVKPKEVREMIES 236
Query: 271 LLKVDSFQVLEKYIEDLILEAY--SATQLFDQFHDIVMSASS--LSDKQKALILEKLAEC 326
LK + + +K L+L Y S + H V+S S L D A +L + E
Sbjct: 237 ALKGNLLEARDKL--RLLLYNYGLSGVDIIRFIHREVLSQKSVRLDDATLAELLVLVGET 294
Query: 327 NARLQDGASEYIQILDLGSIVIKANKTA 354
N R+ +G+ + IQ++ L S + +K A
Sbjct: 295 NYRIVEGSDDEIQLMALLSKLALVSKKA 322
>sp|Q4JAB0|RFCS_SULAC Replication factor C small subunit OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rfcS PE=3 SV=1
Length = 325
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 189/313 (60%), Gaps = 15/313 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+ W EKYRPK++D+++ Q+E+V LKK + ++PH LF GPPGTGKT+ +A L+G
Sbjct: 5 ILWAEKYRPKSLDEIVNQKEIVERLKKFVKEKNMPHLLFAGPPGTGKTTAALALVRDLYG 64
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
+ YR+ LELNASD+RGI VIR+KVK FA+ AS PFK+++LDEAD+MT
Sbjct: 65 NNYRQYFLELNASDERGIDVIRNKVKEFARTVASN-------NVPFKVILLDEADNMTAD 117
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRRTME T++TRF L CNY+S II+P+ SR + FRF PL + ++ RL I + E
Sbjct: 118 AQQALRRTMELYTETTRFILACNYLSKIIEPIQSRTALFRFYPLKKEDVVNRLIQIAKNE 177
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
V D K +ET+ + + GDMR+AI +Q+ + I E V +V G+ I ++L
Sbjct: 178 KVEFDPKGIETIFDITQGDMRKAINVIQAASAYG---KITVETVYKVLGLAQPKEIREML 234
Query: 273 KV----DSFQVLEKYIEDLILEAYSATQLFDQFH-DIVMSASSLSDKQKALILEKLAECN 327
+ Q +K E LI S + Q H ++ + S+ D K ++++ E
Sbjct: 235 HLALSGKFLQARDKLRELLINYGLSGEDIIKQVHKELTGNEISIPDDLKVILVDYAGEVE 294
Query: 328 ARLQDGASEYIQI 340
R+ +GA + IQ+
Sbjct: 295 FRIMEGADDEIQL 307
>sp|A1RSA2|RFCS1_PYRIL Replication factor C small subunit 1 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 238 bits (608), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 134/321 (41%), Positives = 187/321 (58%), Gaps = 20/321 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV S L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL+YI + E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLKYIAKSEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL--EVTGVIPNPWIEKL- 271
A++ + E S GDMR+AI LQ A IV+ +V+ + P +E
Sbjct: 179 EVKEDAIDLIYELSEGDMRKAINILQVAA---ATNKIVDRNVVAAAAAAIRPTDIVELFN 235
Query: 272 --LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
L D + EK E + ++ + F ++ SL D+ KA + E LA+ + R
Sbjct: 236 LALSGDYLKAREKMRELMYVKGVAGVDFIRAFQRELIRM-SLDDETKAEVAELLADVDYR 294
Query: 330 LQDGASEYIQ----ILDLGSI 346
L GA E IQ + LGSI
Sbjct: 295 LTQGADEEIQLSYFLAKLGSI 315
>sp|Q9YBS7|RFCS_AERPE Replication factor C small subunit OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=rfcS PE=3 SV=3
Length = 325
Score = 238 bits (606), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 132/312 (42%), Positives = 188/312 (60%), Gaps = 17/312 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+++DD+++Q+ VV LK+ + ++PH LF GPPGTGKT+ A H LFG+
Sbjct: 9 WVEKYRPRSLDDIVDQKHVVERLKQFVKQRNMPHLLFAGPPGTGKTTAAHALAHDLFGEN 68
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
YR+ +LELNASD+RGI VIR+KVK FA+ P PFKIV+LDEAD+MT AQ
Sbjct: 69 YRQYMLELNASDERGINVIREKVKEFARSRTP-------PEIPFKIVLLDEADNMTSDAQ 121
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME + TRF LI NY S II P+ SRC+ FRF+PL++ ++ RL+YI E E V
Sbjct: 122 QALRRLMELYSSVTRFILIANYPSKIIDPIQSRCAFFRFQPLSKQDVIERLRYIAENEGV 181
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLK 273
+ +AL+ + E S GDMR+AI LQ+ + L G V D V V G+ + ++L
Sbjct: 182 DYEEEALDAIYEISEGDMRKAINVLQAASYL----GKVTVDAVYRVVGMAKPREVREMLA 237
Query: 274 V---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSAS-SLSDKQKALILEKLAECNA 328
F + +++E S + Q H + S + ++ + L + L E +
Sbjct: 238 TALKGDFTAARSLLRKIMIEYGMSGEDVARQIHRELFSTELKMPEELRVLAADYLGEVHY 297
Query: 329 RLQDGASEYIQI 340
RL +G+ + IQ+
Sbjct: 298 RLVEGSDDDIQL 309
>sp|Q54ST4|RFC5_DICDI Probable replication factor C subunit 5 OS=Dictyostelium discoideum
GN=rfc5 PE=3 SV=1
Length = 347
Score = 236 bits (602), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/320 (41%), Positives = 186/320 (58%), Gaps = 15/320 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRPK +DD+I +++ + K + LPH LFYGPPGTGKTST+ A +L+G
Sbjct: 24 LPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPGTGKTSTIQAIARKLYG 83
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
D Y +LELNASDDRGI V+R+++KTFA + FN P+K++ILDEADSMT+
Sbjct: 84 DNYSRMVLELNASDDRGIDVVREQIKTFAS-SMFFFNT----TVPYKLIILDEADSMTNI 138
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+TRFC++CNYV II L SRC++FRF PL RL+ I E+E
Sbjct: 139 AQTALRRVIEKYTKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKE 198
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----W 267
+V D KA+ ++E GDMR+ + LQS + I E + + TG P P
Sbjct: 199 NVKVDSKAMNAVLELGCGDMRKCLNILQSVSMSSIDNNITEEAIYKCTGY-PMPSDIELM 257
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
++ LL D + + + + S + V+ L + +L L++
Sbjct: 258 VDWLLNSDYEEAFQNISDLKKKKGLSLNDIIATLQKFVVQI-DLDNVILCKLLSHLSDIE 316
Query: 328 ARLQDGASEYIQILDLGSIV 347
L G+SE +Q LGS+V
Sbjct: 317 YNLSIGSSEKLQ---LGSLV 333
>sp|Q9D0F6|RFC5_MOUSE Replication factor C subunit 5 OS=Mus musculus GN=Rfc5 PE=2 SV=1
Length = 339
Score = 230 bits (586), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 138/342 (40%), Positives = 192/342 (56%), Gaps = 34/342 (9%)
Query: 14 APSSSKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYG 73
APS + + + R + +PWVEKYRP+T+ D+I Q+++S ++K +S LPH L YG
Sbjct: 5 APSQQRPAAA-----RARNLPWVEKYRPQTLADLISHQDILSTIQKFISEDRLPHLLLYG 59
Query: 74 PPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
PPGTGKTST++A QL+ D + +LELNASDDRGI ++R + +FA T + F +
Sbjct: 60 PPGTGKTSTILACAKQLYKDKEFGSMVLELNASDDRGIDIVRGPILSFAS-TRTIFKKG- 117
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192
FK+VILDEAD+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FR
Sbjct: 118 -----FKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFR 172
Query: 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252
F PL M+ RL+++ ++E+V ++ LV S GDMRRA+ LQS G +
Sbjct: 173 FGPLTPELMVPRLEHVVQEENVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVT 230
Query: 253 NEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQ-----FHDIVMS 307
E V TG +P LK D +L+ + AY HDI+
Sbjct: 231 EETVYTCTG---HP-----LKTDIANILDWMLNQDFTTAYKNIMELKTLKGLALHDILTE 282
Query: 308 AS------SLSDKQKALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G SE IQ+ L
Sbjct: 283 VHLFVHRVDFPSSVRIHLLTKMADIEYRLSVGTSEKIQLSSL 324
>sp|P40937|RFC5_HUMAN Replication factor C subunit 5 OS=Homo sapiens GN=RFC5 PE=1 SV=1
Length = 340
Score = 228 bits (582), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 137/328 (41%), Positives = 192/328 (58%), Gaps = 29/328 (8%)
Query: 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87
T+ + +PWVEKYRP+T++D+I Q+++S ++K ++ LPH L YGPPGTGKTST++A
Sbjct: 15 TKIRNLPWVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACA 74
Query: 88 HQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146
QL+ D + +LELNASDDRGI +IR + +FA T + F + FK+VILDEA
Sbjct: 75 KQLYKDKEFGSMVLELNASDDRGIDIIRGPILSFAS-TRTIFKKG------FKLVILDEA 127
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
D+MT AQ ALRR +EK T++TRFCLICNY+S II L SRC++FRF PL M+ RL+
Sbjct: 128 DAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLE 187
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266
++ E+E V ++ LV S GDMRRA+ LQS G + E V TG +P
Sbjct: 188 HVVEEEKVDISEDGMKALVTLSSGDMRRALNILQSTNMAFG--KVTEETVYTCTG---HP 242
Query: 267 WIEKLLKVDSFQVLEKYIEDLILEAY-SATQLFD----QFHDIV------MSASSLSDKQ 315
LK D +L+ + AY + T+L HDI+ +
Sbjct: 243 -----LKSDIANILDWMLNQDFTTAYRNITELKTLKGLALHDILTEIHLFVHRVDFPSSV 297
Query: 316 KALILEKLAECNARLQDGASEYIQILDL 343
+ +L K+A+ RL G +E IQ+ L
Sbjct: 298 RIHLLTKMADIEYRLSVGTNEKIQLSSL 325
>sp|A4WGV2|RFCS1_PYRAR Replication factor C small subunit 1 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 228 bits (580), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 181/307 (58%), Gaps = 16/307 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + G ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL++I + E +
Sbjct: 119 QALRRIMEMYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLRHIAKSEGI 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED-VLEVTGVIPNPWIEKLLK 273
A++ + E S GDMR+AI LQ A +V+ + V T +I + +L
Sbjct: 179 ELRDDAIDLIYEVSEGDMRKAINLLQVAA---ATSKVVDANAVASATTMIRPADVVELFN 235
Query: 274 V----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ D + EK E + ++ + F ++ L D+ KA I E LAE + R
Sbjct: 236 LAFNGDVTKAREKLRELMYVKGIAGIDFIRAFQRELIRM-PLDDEVKAEIAELLAEVDYR 294
Query: 330 LQDGASE 336
L G+ E
Sbjct: 295 LTQGSDE 301
>sp|Q8ZYK4|RFCS1_PYRAE Replication factor C small subunit 1 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS1 PE=3 SV=1
Length = 329
Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 127/311 (40%), Positives = 177/311 (56%), Gaps = 16/311 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL++I + E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRSLMAERLKFIAKNEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN--EDVLEVTGVIPNPWIEKL- 271
A+ + E S GDMR+AI LQ A +V+ V P IE
Sbjct: 179 ELREDAINMIYELSEGDMRKAINLLQVAA---ATNKVVDANAVASAAIAVRPADIIELFN 235
Query: 272 --LKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329
+ D + EK E + L+ + F ++ + D KA I E LA+ + R
Sbjct: 236 LAISGDFVKAREKLRELMYLKGIAGADFIRAFQRELIRM-PIDDDIKAEIAELLADVDYR 294
Query: 330 LQDGASEYIQI 340
L GA E IQ+
Sbjct: 295 LTQGADEEIQL 305
>sp|P53016|RFC4_CAEEL Replication factor C subunit 4 OS=Caenorhabditis elegans GN=rfc-4
PE=1 SV=1
Length = 334
Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 127/319 (39%), Positives = 191/319 (59%), Gaps = 8/319 (2%)
Query: 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88
R K + W EKYRPKT+DD+ Q EVV++LK L G DLPH LFYGPPGTGKTS +A C
Sbjct: 11 RPKVLTWTEKYRPKTLDDIAYQDEVVTMLKGALQGRDLPHLLFYGPPGTGKTSAALAFCR 70
Query: 89 QLF-GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147
QLF +++ +R+L+LNASD+RGI V+R K+++F++ + +++ KI+ILDE D
Sbjct: 71 QLFPKNIFHDRVLDLNASDERGIAVVRQKIQSFSKSSLGHSHRED--VLKLKIIILDEVD 128
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQAA+RR +E +K+TRF LICNYVS +I P+ SRC+KFRFK L + RL+
Sbjct: 129 AMTREAQAAMRRVIEDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRT 188
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR-LKGGEGIVNEDVLEVT--GVIP 264
IC+ E L+ ++E S GD+RRA+ LQS A LK G+ L + ++
Sbjct: 189 ICDAEGTPMSDDELKQVMEYSEGDLRRAVCTLQSLAPILKSGDDNARNCYLRGSSDSLLI 248
Query: 265 NPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
+ + +L D Q++ + I ++ + + +M ++D+ ++ + +A
Sbjct: 249 SNVCKSILTADVPQIIA--LTKDITKSCTGVAFIRRCFQQLMDEDVINDENIGVMGKLVA 306
Query: 325 ECNARLQDGASEYIQILDL 343
C R+ DG +LD
Sbjct: 307 TCEKRILDGCDLENNLLDF 325
>sp|P38629|RFC3_YEAST Replication factor C subunit 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC3 PE=1 SV=1
Length = 340
Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 138/348 (39%), Positives = 201/348 (57%), Gaps = 33/348 (9%)
Query: 22 VSTSGKTRNKP-VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKT 80
+STS + R+K +PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKT
Sbjct: 1 MSTSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKT 60
Query: 81 STMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKI 140
ST++A +++G Y +LELNASDDRGI V+R+++K FA T F++ FK+
Sbjct: 61 STIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA-STRQIFSKG------FKL 113
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200
+ILDEAD+MT+AAQ ALRR +E+ TK+TRFC++ NY + L SRC++FRF+PL +
Sbjct: 114 IILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEA 173
Query: 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC-ARLKG-GEGIVNEDVLE 258
+ R+ + E + A + L+E S GDMRR + LQSC A L E +++DV+
Sbjct: 174 IERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIY 233
Query: 259 VTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAY---------SATQLFDQFHDIV--MS 307
P P D VL+ +ED A+ L D IV +
Sbjct: 234 ECCGAPRP-------SDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILE 286
Query: 308 ASSLSDKQ-KALILEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
L +++ + +L KLA+ + G ++ IQ GS VI A K +
Sbjct: 287 DYELQNEETRVHLLTKLADIEYSISKGGNDQIQ----GSAVIGAIKAS 330
>sp|A4WLY0|RFCS2_PYRAR Replication factor C small subunit 2 OS=Pyrobaculum arsenaticum
(strain DSM 13514 / JCM 11321) GN=rfcS2 PE=3 SV=1
Length = 322
Score = 225 bits (573), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 155/244 (63%), Gaps = 10/244 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + G ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLREFVRGGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NY+S II+P+ SR RF PL + + RL+YI + E V
Sbjct: 119 QALRRIMEMYAQNTRFILLANYISGIIEPIQSRTVMIRFSPLPKEAVFARLRYIADNEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
ALE + E + GDMRRAI LQ A G+ I E V + G++ + + L
Sbjct: 179 KISDDALEAIYEFTQGDMRRAINALQIAA--TTGKEITEETVAKALGMVSPRLLRETLN- 235
Query: 275 DSFQ 278
D+F+
Sbjct: 236 DAFR 239
>sp|A1RV38|RFCS2_PYRIL Replication factor C small subunit 2 OS=Pyrobaculum islandicum
(strain DSM 4184 / JCM 9189) GN=rfcS2 PE=3 SV=1
Length = 320
Score = 225 bits (573), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 108/223 (48%), Positives = 147/223 (65%), Gaps = 10/223 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV S L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKSRLREFVKSGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NY+S II+P+ SR RF PL + +++RL+YI E E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYISGIIEPIQSRVVMIRFNPLPKEAVISRLRYIAENEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVL 257
ALET+ E + GDMR+AI LQ A E + EDV+
Sbjct: 179 KISDDALETIYEFTQGDMRKAINALQIAA---ATEKEITEDVV 218
>sp|P60374|RFCS_NANEQ Replication factor C small subunit OS=Nanoarchaeum equitans (strain
Kin4-M) GN=rfcS PE=3 SV=1
Length = 322
Score = 224 bits (572), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 129/321 (40%), Positives = 185/321 (57%), Gaps = 34/321 (10%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK IDD+I Q+E+ LK + ++PH LF GPPGTGKT+ +A H+L+GD
Sbjct: 4 WTEKYRPKRIDDIINQEEIKKALKSFVEKKNMPHLLFAGPPGTGKTTAALALAHELYGDA 63
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR KVK FA+ G PFKIV LDEAD++T AQ
Sbjct: 64 WRENFLELNASDERGIDVIRHKVKEFARAKPIG-------DVPFKIVFLDEADALTRDAQ 116
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR MEK ++STRF L CNY S II+P+ SR + F+FKPL + + I + E +
Sbjct: 117 QALRRIMEKYSQSTRFILSCNYFSKIIEPIQSRVTVFKFKPLEKEAFRELINRIVKGEGL 176
Query: 215 MCDF--KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
+ + + + L + + GD+R+AI LQ+ A + + I + + E+ I K
Sbjct: 177 ILENEDEIINALYDIAEGDLRKAINILQAAAMM--SKTITVDRLYEIAS------IAKPK 228
Query: 273 KVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASS-------------LSDKQKALI 319
++D +VL K ++ LEA S L D MS +SD++K +I
Sbjct: 229 EID--EVLNKAMQGNFLEARS--MLIDLMLKYGMSGEDVIKAIQKRVWSLPISDREKLMI 284
Query: 320 LEKLAECNARLQDGASEYIQI 340
L+K+ + R+ +GA + +Q+
Sbjct: 285 LDKIGDIEFRIVEGADDLVQL 305
>sp|Q8ZWS2|RFCS2_PYRAE Replication factor C small subunit 2 OS=Pyrobaculum aerophilum
(strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC
100827) GN=rfcS2 PE=3 SV=1
Length = 319
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 147/229 (64%), Gaps = 9/229 (3%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ D+V++ +EV + L++ + ++PH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFDEVVDLEEVKARLRQFVKAGNMPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGINVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II+P+ SR RF PL + + RL+YI E E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSGIIEPIQSRTVMIRFSPLPKEAVFARLRYIAENEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263
ALE + E + GDMRRAI LQ A + + + E V + G++
Sbjct: 179 KVSDDALEAIYEFTQGDMRRAINALQIAATV--SKAVTEEVVAKALGMV 225
>sp|A3MS28|RFCS_PYRCJ Replication factor C small subunit OS=Pyrobaculum calidifontis
(strain JCM 11548 / VA1) GN=rfcS PE=3 SV=1
Length = 326
Score = 223 bits (567), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/326 (39%), Positives = 182/326 (55%), Gaps = 30/326 (9%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP++ ++V++ +EV + L++ + +LPH LFYGPPGTGKT+ + +L+G+
Sbjct: 6 WFEKYRPRSFEEVVDLEEVKARLREFVKAGNLPHLLFYGPPGTGKTTMALVLARELYGEY 65
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI VIR++VK FA+ G PFK+VILDEAD+MT AQ
Sbjct: 66 WRENTLELNASDERGIGVIRERVKEFARTAPVG-------KAPFKLVILDEADNMTSDAQ 118
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
ALRR ME ++TRF L+ NYVS II P+ SRC+ FRF P+ + M RL+ I E V
Sbjct: 119 QALRRIMEIYAQNTRFILLANYVSRIIDPIISRCAVFRFSPMPRHLMAERLREIARSEGV 178
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN----------EDVLEVTGVIP 264
A++ + E S GDMR+AI LQ A + DVLE+ +
Sbjct: 179 ELKDDAIDLIYEISEGDMRKAINLLQVAAAVSKVVDANAVASAAAAVRPSDVLELFNLA- 237
Query: 265 NPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLA 324
+ D + +K E + ++ + L F ++ L D KA + E L+
Sbjct: 238 -------MGGDLAKARDKLRELMYIKGVAGVDLIRVFQRELIRM-QLDDDVKAEVAELLS 289
Query: 325 ECNARLQDGASEYIQ----ILDLGSI 346
E + RL GA E IQ ++ LGSI
Sbjct: 290 EVDYRLTQGADEEIQLMYFLMKLGSI 315
>sp|Q6L1I0|RFCS_PICTO Replication factor C small subunit OS=Picrophilus torridus (strain
ATCC 700027 / DSM 9790 / JCM 10055 / NBRC 100828)
GN=rfcS PE=3 SV=1
Length = 318
Score = 221 bits (562), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 129/313 (41%), Positives = 181/313 (57%), Gaps = 21/313 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK +DDVI + E ++ LK + DLPH +F GP GTGKTST IA +LFGD
Sbjct: 5 WTEKYRPKRLDDVIGEDENINTLKSFVKNGDLPHLIFAGPAGTGKTSTAIALTIELFGDD 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
++E LELNASD+RGI +IR+ +K FA+ S N+ G FKI+ LDEAD +T+ AQ
Sbjct: 65 WKENFLELNASDERGIDIIRNNIKDFAKIRPS--NKLG-----FKIIFLDEADQLTNEAQ 117
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
AALRRTME +TRF CNY S II P+ SRC RF+PL + M +L+ I + E
Sbjct: 118 AALRRTMEMFYSTTRFIFSCNYSSKIIPPIQSRCVVLRFRPLDKEAMERKLREIAKNEKF 177
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
D +L+ + E S GDMR+AI +Q+ GE I + E++G I + L+ +
Sbjct: 178 DIDDDSLDAIYEISDGDMRKAINVMQAIQ--STGE-IKPSKIYEISGEINKNEYKNLISL 234
Query: 275 -------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
D+ +L+K + D L S + H + + ++++QK IL LAE
Sbjct: 235 SLNGAFSDAKSLLDKMLVDYGL---SGIDIIRGMHSAIRN-ERIANRQKLEILIALAEFE 290
Query: 328 ARLQDGASEYIQI 340
R+ G S+ +Q+
Sbjct: 291 FRISQGGSDNVQM 303
>sp|Q5UZE5|RFCS_HALMA Replication factor C small subunit OS=Haloarcula marismortui
(strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809)
GN=rfcS PE=3 SV=2
Length = 325
Score = 220 bits (560), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 117/310 (37%), Positives = 178/310 (57%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DDV+ + +V LK +S DL H LF GP GTGKT+ A +L+GD
Sbjct: 16 WIEKYRPQTLDDVMGHENIVGRLKSYVSRNDLSHMLFSGPAGTGKTTCATAIARELYGDD 75
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD+RGI V+RD++K FA+ + G ++I+ LDEAD++T AQ
Sbjct: 76 WREHFLELNASDERGIDVVRDRIKNFARTSFGGV--------EYRIIFLDEADALTSDAQ 127
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + + RF L CNY S II P+ SRC+ FRF PLA++ + ++ I +E +
Sbjct: 128 SALRRTMEQFSNNVRFILSCNYSSQIIDPIQSRCAVFRFSPLADDAVAEEIRTIAAEEDI 187
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK- 273
L+ LV + GDMR+AI LQ+ + G+ + V +T I +++
Sbjct: 188 ELTEDGLDALVYAADGDMRKAINGLQAAS--VSGDTVDESAVYAITSTARPEEIRTMVQS 245
Query: 274 -VDSFQVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D + D +L E + + DQ H + + D +LE++ E + R+
Sbjct: 246 ALDGDFTASRATLDRLLTEEGIAGGDIIDQLHRSIWEF-DIDDDAAVRVLERIGETDYRI 304
Query: 331 QDGASEYIQI 340
GA+E +Q+
Sbjct: 305 TRGANERVQL 314
>sp|A6US36|RFCS_METVS Replication factor C small subunit OS=Methanococcus vannielii
(strain SB / ATCC 35089 / DSM 1224) GN=rfcS PE=3 SV=1
Length = 315
Score = 219 bits (557), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 120/320 (37%), Positives = 180/320 (56%), Gaps = 32/320 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +D+V+ QE++ LK + +PH LF G PG GKT+ + L+G+
Sbjct: 4 PWVEKYRPENLDEVVGHQEIIKRLKNYVEKKSMPHLLFSGSPGVGKTTAALCLAKDLYGN 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++E LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWKENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+ES
Sbjct: 117 QNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVKNLKEISEKES 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ ++ S GDMR+AI LQ+ A + +NE V+ P +++ K
Sbjct: 177 INVEKSGMDAIIYVSEGDMRKAINVLQTGAAVSKN---INETVIYKVASKARP--DEIKK 231
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALIL 320
+ + K++E + QL+ D MS +S+K+K ++
Sbjct: 232 MTELALNGKFVE-------AREQLYKLMIDWGMSGEDIIIQIFREVPNLEISEKEKVHLV 284
Query: 321 EKLAECNARLQDGASEYIQI 340
E + EC+ R+ +GA+E IQ+
Sbjct: 285 EAIGECDFRIVEGANERIQL 304
>sp|Q9HN27|RFCS_HALSA Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 700922 / JCM 11081 / NRC-1) GN=rfcS PE=3
SV=1
Length = 322
Score = 218 bits (556), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 179/310 (57%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+ ++DV+ ++ L+ + DLPH LF GP GTGKT++ ++ +L+GD
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+++ LELNASD+RGI V+RD++K FA+ + G N ++++ LDEAD++T AQ
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFARSSFGGHN--------YRVIFLDEADALTDDAQ 123
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L ++ + L+ I E E +
Sbjct: 124 SALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGL 183
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
++ LV + GDMRRAI LQ+ + G+ + E V +T IE ++
Sbjct: 184 EHTDDGIDALVYAADGDMRRAINALQAAS--ATGDSVNEETVYAITATARPEEIETMVTE 241
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
F ++DL+ + + DQ H V + + +L++L E + R+
Sbjct: 242 ALGGDFAAARATLDDLLTNRGLAGGDIIDQVHRSVWE-FDVEEAAAVRLLDRLGEADYRI 300
Query: 331 QDGASEYIQI 340
+GA+E +Q+
Sbjct: 301 AEGANERVQL 310
>sp|B0R7H7|RFCS_HALS3 Replication factor C small subunit OS=Halobacterium salinarum
(strain ATCC 29341 / DSM 671 / R1) GN=rfcS PE=3 SV=1
Length = 322
Score = 218 bits (556), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 113/310 (36%), Positives = 179/310 (57%), Gaps = 15/310 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
WVEKYRP+ ++DV+ ++ L+ + DLPH LF GP GTGKT++ ++ +L+GD
Sbjct: 12 WVEKYRPERLEDVVGHPDITERLQSYVDRDDLPHLLFAGPAGTGKTASSVSIAKELYGDD 71
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+++ LELNASD+RGI V+RD++K FA+ + G N ++++ LDEAD++T AQ
Sbjct: 72 WQDNFLELNASDERGIDVVRDRIKDFARSSFGGHN--------YRVIFLDEADALTDDAQ 123
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF L ++ + L+ I E E +
Sbjct: 124 SALRRTMEQFSNNTRFILSCNYSSKIIDPIQSRCAVFRFAQLGDDAVAAHLREIAETEGL 183
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
++ LV + GDMRRAI LQ+ + G+ + E V +T IE ++
Sbjct: 184 EHTDDGIDALVYAADGDMRRAINALQAAS--ATGDSVNEETVYAITATARPEEIETMVTE 241
Query: 275 ---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
F ++DL+ + + DQ H V + + +L++L E + R+
Sbjct: 242 ALGGDFAAARATLDDLLTNRGLAGGDIIDQVHRSVWE-FDVEEAAAVRLLDRLGEADYRI 300
Query: 331 QDGASEYIQI 340
+GA+E +Q+
Sbjct: 301 AEGANERVQL 310
>sp|Q3ITJ2|RFCS_NATPD Replication factor C small subunit OS=Natronomonas pharaonis
(strain DSM 2160 / ATCC 35678) GN=rfcS PE=3 SV=1
Length = 325
Score = 218 bits (554), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 179/305 (58%), Gaps = 15/305 (4%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W+EKYRP+T+DD++ + + LK+ ++ DLPH LF GP G GKT+ A +++GD
Sbjct: 14 WIEKYRPQTLDDIVGHESITERLKQYIAQNDLPHLLFAGPAGVGKTTAATAIAKEVYGDD 73
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+RE LELNASD RGI V+RD++K+FA+ + G++ +I+ LDEAD++T AQ
Sbjct: 74 WRENFLELNASDQRGIDVVRDRIKSFARASFGGYDH--------RIIFLDEADALTSDAQ 125
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + +TRF L CNY S II P+ SRC+ FRF PL + + +++ I + E +
Sbjct: 126 SALRRTMEQFSDNTRFILSCNYSSQIIDPIQSRCAVFRFSPLGDAAVDEQIRIIADTEGI 185
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL-- 272
++ LV + GDMR+AI LQ+ A + G + E V +T I +++
Sbjct: 186 ELTDDGVDALVYAADGDMRKAINGLQAAAVMGG--TVDEEAVYTITSTARPEEIREMVTE 243
Query: 273 KVDS-FQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARL 330
+D F +E L+ + + + DQ H V L +++ ++E++ E + R+
Sbjct: 244 AMDGDFTAARSQLETLLTDVGIAGGDIIDQLHRSVWE-FDLEEREAVQLMERIGEADYRI 302
Query: 331 QDGAS 335
GAS
Sbjct: 303 TAGAS 307
>sp|O14003|RFC3_SCHPO Replication factor C subunit 3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rfc3 PE=1 SV=2
Length = 342
Score = 217 bits (553), Expect = 9e-56, Method: Compositional matrix adjust.
Identities = 125/337 (37%), Positives = 193/337 (57%), Gaps = 38/337 (11%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP ++DV+ ++++S L+K +S +PH LFYGPPGTGKTST++A +++G
Sbjct: 23 LPWVEKYRPANLEDVVSHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILACARKIYG 82
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
YR +++ELNASDDRGI +R+++K FA T F FK++ILDEAD+MT A
Sbjct: 83 PNYRNQLMELNASDDRGIDAVREQIKNFA-STRQIF------ASTFKMIILDEADAMTLA 135
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +EK TK+ RFC+ICNY++ I + SRC++FRF+PL + + ++ + E
Sbjct: 136 AQNALRRVIEKYTKNVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSE 195
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI-----PNP- 266
D A ++ S GDMR+A+ LQ+C D ++V+ + P+P
Sbjct: 196 HCNIDPDAKMAVLRLSKGDMRKALNILQACH--------AAYDHIDVSAIYNCVGHPHPS 247
Query: 267 ---WIEKLLKVDSFQVLEKYIEDLILEAYSATQ-----LFDQFHDIVMSASSLSDKQKAL 318
+ K + D F + I + + A Q +F+ ++ + ++ K
Sbjct: 248 DIDYFLKSIMNDEFVIAFNTISSIKQQKGLALQDILTCIFEALDELEIKPNA-----KIF 302
Query: 319 ILEKLAECNARLQDGASEYIQILDLGSIVIKANKTAV 355
IL++LA R+ G SE IQ+ S +I + KT V
Sbjct: 303 ILDQLATIEHRMSFGCSEKIQL----SAMIASIKTGV 335
>sp|Q8PVY4|RFCS_METMA Replication factor C small subunit OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=rfcS PE=3 SV=1
Length = 338
Score = 216 bits (551), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 116/318 (36%), Positives = 185/318 (58%), Gaps = 19/318 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP ++ V Q+E + L ++ +LPH LF GPPG GKT++ ++ ++FG D
Sbjct: 15 WIEKYRPVRLNQVAGQEETIERLMSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++RE ELNASD+RGI ++R+K+K FA+ G PFKI+ LDEAD++T A
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPMG-------GAPFKIIFLDEADALTSDA 127
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTMEK + + RF L CNY S II+P+ SRC+ +RF+ L++ + RL+YI +++
Sbjct: 128 QSALRRTMEKFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDKAIRERLEYIAKEQD 187
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ E L+ + GDMR+A+ LQ+ A + + I E + T I+ L++
Sbjct: 188 LSITDGGYEALIYVAQGDMRKAVNSLQAAAFIDVEKPISRETIYRTTATANPEEIKNLIE 247
Query: 274 V---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASS-------LSDKQKALILEK 322
+F+V K + L+ E S + Q + +V + LS++ +++
Sbjct: 248 TALRGNFRVARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMILDLGLSERDIVGLVDI 307
Query: 323 LAECNARLQDGASEYIQI 340
+ E + RL +GASE IQ+
Sbjct: 308 IGETDFRLTEGASEKIQL 325
>sp|Q8TSX5|RFCS_METAC Replication factor C small subunit OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rfcS
PE=3 SV=1
Length = 338
Score = 216 bits (551), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 114/318 (35%), Positives = 183/318 (57%), Gaps = 19/318 (5%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP ++ V Q E + LK ++ +LPH LF GPPG GKT++ ++ ++FG D
Sbjct: 15 WIEKYRPVRLNQVAGQDETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 74
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++RE ELNASD+RGI ++R+K+K FA+ G PFKI+ LDEAD++T A
Sbjct: 75 LWRENFTELNASDERGIDIVRNKIKNFAKTAPIG-------GAPFKIIFLDEADALTADA 127
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + + RF L CNY S II+P+ SRC+ +RF+ L++ + RL+YI +
Sbjct: 128 QSALRRTMERFSSNCRFILSCNYSSKIIEPIQSRCAVYRFRRLSDEAIKERLEYIAGDQG 187
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ E L+ + GDMR+A+ LQ+ A + + I E + T I+ L++
Sbjct: 188 LSITEGGYEALIYVAQGDMRKAVNSLQAAAFIDTDKSISRETIYRTTATANPEEIKNLIE 247
Query: 274 V---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASS-------LSDKQKALILEK 322
+F++ K + L+ E S + Q + +V + L+++ +++
Sbjct: 248 TALRGNFRIARKELNRLLYEEGLSGEDIVGQIYRVVSEMDNLMVLDLGLTERDIVALVDV 307
Query: 323 LAECNARLQDGASEYIQI 340
+ E + RL +GASE IQ+
Sbjct: 308 IGETDFRLTEGASEKIQL 325
>sp|O26343|RFCS_METTH Replication factor C small subunit OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rfcS PE=1 SV=1
Length = 321
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 180/315 (57%), Gaps = 19/315 (6%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q+ ++ LK+ + +P+ +F GP G GKT+ +A ++ G+
Sbjct: 7 PWVEKYRPQKLDDIVGQEHIIPRLKRYVEEKSMPNLMFTGPAGVGKTTAALALAREILGE 66
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R+ LELNASD RGI +R +K F + G PF+I+ LDE D+MT A
Sbjct: 67 YWRQNFLELNASDARGIDTVRTSIKNFCRLKPVG--------APFRIIFLDEVDNMTKDA 118
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRR ME TK++ F L CNY S II P+ SRC+ FRF PL + ++ RL+YI E+E+
Sbjct: 119 QHALRREMEMYTKTSSFILSCNYSSKIIDPIQSRCAIFRFLPLKGHQIIKRLEYIAEKEN 178
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ALET+V + GD+R+AI LQS A L GE I + +V + K++K
Sbjct: 179 LEYEAHALETIVYFAEGDLRKAINLLQSAASL--GEKITESSIYDVVSRARPKDVRKMIK 236
Query: 274 V----DSFQVLEKYIEDLILEAYSA----TQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
+ + E ++L+ S TQ++ + + M D+ LI + + E
Sbjct: 237 TILDGKFMEARDMLREIMVLQGISGEDMVTQIYQELSRLAMEGEVDGDRYVGLI-DAIGE 295
Query: 326 CNARLQDGASEYIQI 340
+ R+++GA+ IQ+
Sbjct: 296 YDFRIREGANPRIQL 310
>sp|P34429|RFC5_CAEEL Probable replication factor C subunit 5 OS=Caenorhabditis elegans
GN=F44B9.8 PE=3 SV=3
Length = 368
Score = 216 bits (550), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 122/318 (38%), Positives = 175/318 (55%), Gaps = 16/318 (5%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP +D+++ +++V L K + LPH LFYGPPGTGKT+T++AA Q++
Sbjct: 29 LPWVEKYRPSKLDELVAHEQIVKTLTKFIENRTLPHLLFYGPPGTGKTTTVLAAARQMYS 88
Query: 93 DM-YRERILELNASDDRGIQVIRDKVKTFAQ----QTASGFNQDGKPCPPFKIVILDEAD 147
+LELNASD+RGI V+R+ + FAQ Q S + G PFK+VILDEAD
Sbjct: 89 PTKMASMVLELNASDERGIDVVRNTIVNFAQTKGLQAFSTSSNTG--TVPFKLVILDEAD 146
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207
+MT AQ ALRR +EK T + RFC+ICNY++ I+ + SRC++FRF PL + ++ RL+Y
Sbjct: 147 AMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLIVPRLEY 206
Query: 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP- 266
I E E + + L+ S GDMR I LQS A + + V + G P P
Sbjct: 207 IVETEQLKMTPDGKDALLIVSKGDMRTVINTLQSTAM--SFDTVSENTVYQCIGQ-PTPK 263
Query: 267 ----WIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322
++ LL S + + L Y+ + HD V + + D+ + I+
Sbjct: 264 EMKEVVKTLLNDPSKKCMNTIQTKLFENGYALQDVITHLHDFVFTL-DIPDEAMSAIITG 322
Query: 323 LAECNARLQDGASEYIQI 340
L E L G S Q+
Sbjct: 323 LGEVEENLSTGCSNETQL 340
>sp|Q46C63|RFCS_METBF Replication factor C small subunit OS=Methanosarcina barkeri
(strain Fusaro / DSM 804) GN=rfcS PE=3 SV=1
Length = 334
Score = 216 bits (549), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 121/320 (37%), Positives = 184/320 (57%), Gaps = 23/320 (7%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-D 93
W+EKYRP +D V Q+E + LK ++ +LPH LF GPPG GKT++ ++ ++FG D
Sbjct: 11 WIEKYRPVRLDQVAGQEETIERLKSYVATKNLPHLLFSGPPGVGKTASAVSIAREIFGED 70
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
++RE ELNASD+RGI V+R K+K FA+ G FKI+ LDEAD++T A
Sbjct: 71 LWRENFTELNASDERGIDVVRTKIKNFAKTAPMG-------GAEFKIIFLDEADALTSDA 123
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q+ALRRTME+ + + RF L CNY S II+P+ SRC+ FRF+ L++ + RL+YI + +
Sbjct: 124 QSALRRTMERFSNNCRFILSCNYSSRIIEPIQSRCAVFRFRRLSDEAIRKRLEYIAKDQV 183
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP-----WI 268
+ E LV S GDMR+A+ LQ+ A ++ + I + T NP I
Sbjct: 184 LSITEDGYEALVYVSQGDMRKAVNSLQAAAFVEPNKSISRGTIYRTTAT-ANPEDIRNLI 242
Query: 269 EKLLKVDSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASS-------LSDKQKALIL 320
E L+ +F+V K + L+ E S + Q + + + LS+K+ ++
Sbjct: 243 ETALR-GNFRVARKELNRLLYEEGLSGEDIVGQIYRAISEMDNRMILDLGLSEKRIVELV 301
Query: 321 EKLAECNARLQDGASEYIQI 340
+ + E + RL +GA+E IQ+
Sbjct: 302 DIIGEIDFRLTEGATEKIQL 321
>sp|A6VJ61|RFCS_METM7 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C7 / ATCC BAA-1331) GN=rfcS PE=3 SV=1
Length = 315
Score = 215 bits (547), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 180/320 (56%), Gaps = 32/320 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+G+
Sbjct: 4 PWVEKYRPQTLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFVLSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKEISEKEN 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ ++ S GDMR+AI LQ+ A + V E+++ P +++ K
Sbjct: 177 LTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS---DTVTEEIVYKVASKARP--DEIKK 231
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALIL 320
+ + K++E S QL++ D MS +S+K+K ++
Sbjct: 232 MTQLALNGKFVE-------SREQLYNLMIDWGMSGEDILIQIFREVPNLDISEKEKVHLV 284
Query: 321 EKLAECNARLQDGASEYIQI 340
E + EC+ R+ +G++E IQ+
Sbjct: 285 EAIGECDFRIVEGSNERIQL 304
>sp|A9A6K6|RFCS_METM6 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C6 / ATCC BAA-1332) GN=rfcS PE=3 SV=1
Length = 315
Score = 214 bits (546), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 118/320 (36%), Positives = 180/320 (56%), Gaps = 32/320 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+GD
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKET 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ ++ S GDMR+AI LQ+ A + V E+++ P +++ K
Sbjct: 177 LTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS---DTVTEEIVYKVASKARP--DEIKK 231
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALIL 320
+ + K++E + QL++ D MS +S+K+K ++
Sbjct: 232 MTQLALNGKFVE-------AREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLV 284
Query: 321 EKLAECNARLQDGASEYIQI 340
E + EC+ R+ +G++E IQ+
Sbjct: 285 EAIGECDFRIVEGSNERIQL 304
>sp|P40339|RFC4_YEAST Replication factor C subunit 4 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RFC4 PE=1 SV=1
Length = 323
Score = 214 bits (546), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 122/335 (36%), Positives = 187/335 (55%), Gaps = 21/335 (6%)
Query: 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86
KT + +PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++
Sbjct: 3 KTLSLQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCL 62
Query: 87 CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILD 144
H+L G Y + +LELNASDDRGI V+R+++K FAQ+ PP KIVILD
Sbjct: 63 AHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLH--------LPPGKHKIVILD 114
Query: 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204
EADSMT AQ ALRRTME + STRF CN + II+PL SRC+ R+ L++ +L R
Sbjct: 115 EADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSRCAILRYSKLSDEDVLKR 174
Query: 205 LQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264
L I + E V LE ++ T+ GDMR+AI LQS G G+VN D + P
Sbjct: 175 LLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTV---AGHGLVNADNVFKIVDSP 231
Query: 265 NPWIEKLLKV-----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
+P I K + + DS Q+L DL + YS+ + + + + + + + +
Sbjct: 232 HPLIVKKMLLASNLEDSIQILR---TDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEM 288
Query: 320 LEKLAECNARLQDGASEYIQILDLGSIVIKANKTA 354
++++ + R+ +G Y+Q+ + + + K N A
Sbjct: 289 IKEIGLTHMRILEGVGTYLQLASMLAKIHKLNNKA 323
>sp|Q6M044|RFCS_METMP Replication factor C small subunit OS=Methanococcus maripaludis
(strain S2 / LL) GN=rfcS PE=3 SV=1
Length = 315
Score = 214 bits (544), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 180/320 (56%), Gaps = 32/320 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+GD
Sbjct: 4 PWVEKYRPETLSEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGD 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKEN 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ ++ S GDMR+AI LQ+ A + + E+++ P +++ K
Sbjct: 177 LNLEKGGIDAIIYVSEGDMRKAINVLQTAAAVSDE---ITEEIVYKVASKARP--DEIKK 231
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALIL 320
+ + K++E + QL++ D MS +S+K+K ++
Sbjct: 232 MTQLALNGKFVE-------AREQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLV 284
Query: 321 EKLAECNARLQDGASEYIQI 340
E + EC+ R+ +G++E IQ+
Sbjct: 285 EAIGECDFRIVEGSNERIQL 304
>sp|Q0W037|RFCS_UNCMA Replication factor C small subunit OS=Uncultured methanogenic
archaeon RC-I GN=rfcS PE=3 SV=1
Length = 322
Score = 213 bits (542), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 119/313 (38%), Positives = 176/313 (56%), Gaps = 20/313 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRP+ ++DVI Q++ L + +LPH LF GPPG GKT+ +A +L+G+
Sbjct: 7 WTEKYRPRRLEDVIGHQQITRRLISYVKSGNLPHLLFSGPPGVGKTACAVALARELYGET 66
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ +ELNASD+RGI V+R+ +K FA+ G + FKI+ LDEAD++T AQ
Sbjct: 67 WHSNFIELNASDERGIDVVRNNIKNFARTAPLGEAK-------FKIIFLDEADALTSDAQ 119
Query: 155 AALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214
+ALRRTME+ + RF + CNY S II+P+ SRC+ +RF PL + T + I + E +
Sbjct: 120 SALRRTMERYAATCRFIISCNYSSKIIEPIQSRCAVYRFGPLNATDITTGITRIAKNEGL 179
Query: 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274
+ ++ L+ + GDMRRAI LQS A + + I + + + T IE +LK+
Sbjct: 180 KIEKDGMDALIYVARGDMRRAINALQSAATI--AKDITADVIYQTTSTAKPKEIEDMLKL 237
Query: 275 -------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
DS L+ E LI S T + DQ + + D AL+ +++ E +
Sbjct: 238 ALNGQFMDSRNKLD---ELLITYGLSGTDIIDQIYRSMFELGLDEDVLVALV-DRIGEAD 293
Query: 328 ARLQDGASEYIQI 340
RL +GASE IQI
Sbjct: 294 FRLTEGASERIQI 306
>sp|A4FZ74|RFCS_METM5 Replication factor C small subunit OS=Methanococcus maripaludis
(strain C5 / ATCC BAA-1333) GN=rfcS PE=3 SV=1
Length = 315
Score = 213 bits (541), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 180/320 (56%), Gaps = 32/320 (10%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+T+ +V+ E++ L + +PH LF G PG GKT+ +A L+G+
Sbjct: 4 PWVEKYRPETLPEVVGHHEIIKRLTNYVEKKSMPHLLFSGSPGVGKTTAALALAKDLYGE 63
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+RE LELN+SD+RGI VIR KVK FA+ G PFK++ LDE+D++T A
Sbjct: 64 TWRENFLELNSSDERGIDVIRTKVKDFARTKPIG-------DAPFKVIFLDESDALTSDA 116
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTMEK + RF L CNY S II P+ SRC+ FRF PL ++ L+ I E+E+
Sbjct: 117 QNALRRTMEKYSDICRFILSCNYPSKIIPPIQSRCAIFRFSPLKTEDLVENLKDISEKET 176
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLK 273
+ + ++ ++ S GDMR+AI LQ+ A + V E+++ P +++ K
Sbjct: 177 LTLEKGGIDAIIYVSEGDMRKAINVLQTAAAVS---DTVTEEIVYKVASKARP--DEIKK 231
Query: 274 VDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSAS-------------SLSDKQKALIL 320
+ + K++E + QL++ D MS +S+K+K ++
Sbjct: 232 MTHLALNGKFVE-------AKEQLYNLMIDWGMSGEDILIQVFREVPNLDISEKEKVHLV 284
Query: 321 EKLAECNARLQDGASEYIQI 340
E + EC+ R+ +G++E IQ+
Sbjct: 285 EAIGECDFRIVEGSNERIQL 304
>sp|Q5UP47|RFCS3_MIMIV Putative replication factor C small subunit L499 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L499 PE=3 SV=1
Length = 344
Score = 210 bits (535), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 121/305 (39%), Positives = 177/305 (58%), Gaps = 13/305 (4%)
Query: 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
K +PWVEKYRP+ ID +I ++++ LKK + LPH LF+GP G+GKTST+ ++
Sbjct: 15 KQLPWVEKYRPQEIDHIISNRDIILSLKKFIESRTLPHLLFFGPSGSGKTSTIKCCAREI 74
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+G ILELNAS++RGI+ +R K+K F +S F G FK+VILDE DSMT
Sbjct: 75 YGKYINYMILELNASNERGIETVRTKIKNFVSSKSSIFLPMGVR-DIFKLVILDEIDSMT 133
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE 210
AQ LR+T+EK + +TRFCLICN + I L SRC+ FRF PL E M RL IC
Sbjct: 134 VEAQGMLRQTIEKNSGTTRFCLICNDIDKINIALQSRCASFRFSPLNELDMHGRLSDICR 193
Query: 211 QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG-----VIPN 265
E V + +A+ ++++ S GDMR AI LQ + GG I EDV +++G ++ +
Sbjct: 194 LEGVKYEKEAINSIIKISKGDMRSAINTLQHVNLVIGG-SINTEDVYKISGHCMPEIVTD 252
Query: 266 PW-IEKLLKVDSFQVLEKYIEDLIL----EAYSATQLFDQFHDIVMSASSLSDKQKALIL 320
+ I L + + L+K + D+I + L ++ +IVM S + QK ++
Sbjct: 253 VFDILFSLNKNKTKSLKKSVNDIITIVTENNITIFNLLEELKNIVME-SKFTTSQKIFLI 311
Query: 321 EKLAE 325
+ A+
Sbjct: 312 DNFAK 316
>sp|Q5UQ72|RFCS4_MIMIV Putative replication factor C small subunit L510 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R510 PE=3 SV=1
Length = 363
Score = 209 bits (532), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 93/213 (43%), Positives = 141/213 (66%), Gaps = 1/213 (0%)
Query: 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89
++ VPW+EKYRPK ++D+ + Q ++ + K ++ HFLFYGPPGTGKTS ++A +
Sbjct: 4 DESVPWIEKYRPKKLEDITQSQNLLDLFKNSTKKGEMTHFLFYGPPGTGKTSAILAMGRE 63
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN-QDGKPCPPFKIVILDEADS 148
+F + ++ R++E NASDDRGI +R+K+ A++ + +DG P +KI+ILDEADS
Sbjct: 64 IFKEHFQNRVIEFNASDDRGINAVREKITNEAKKYVAEIKLEDGTIIPSYKIIILDEADS 123
Query: 149 MTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI 208
MT AQ ALR +E+ + +TRFC ICNY++ I + SRCS FK L++ M+ +L I
Sbjct: 124 MTDEAQDALRVIIEQYSTATRFCFICNYITKITDAIKSRCSSVYFKKLSDECMVEKLNDI 183
Query: 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQS 241
+ES+ L T+++ S GDMR+AI LQ+
Sbjct: 184 SLKESMELPKNILHTIIDVSNGDMRKAIMLLQN 216
>sp|Q977Z9|RFCS_THEVO Replication factor C small subunit OS=Thermoplasma volcanium
(strain ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 /
GSS1) GN=rfcS PE=3 SV=2
Length = 318
Score = 209 bits (531), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 124/327 (37%), Positives = 185/327 (56%), Gaps = 32/327 (9%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK++ ++ + E + LK + +LPH LF G GTGKTST IA +LFG+
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKELPHLLFAGSVGTGKTSTAIALAIELFGES 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTHA 152
++E +E+NAS++ GI VIR+K+K A+ +P P FKI+ LDEAD +T
Sbjct: 65 WKENFIEMNASNENGIDVIRNKIKDIARI---------RPSNPLGFKILFLDEADQLTAE 115
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRRTME +++TRF CNY S II P+ SR RF+P+ + + +L I + E
Sbjct: 116 AQAALRRTMEMYSETTRFVFACNYSSKIIPPIQSRTVVMRFRPVQDEFIKKKLNEIAKNE 175
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
D +++E +VE SGGDMR+AI LQ+ GE I + + E+ G + KL+
Sbjct: 176 GFTIDDESMEAMVEVSGGDMRKAINVLQAV--YTSGE-ISPKKIYEIIGYASPESVNKLI 232
Query: 273 KV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAE 325
++ Q+++K +I + S + H IV AS + KQK I++ LA+
Sbjct: 233 SRAINGLFDEARQIVDKM---MIEDGLSGIDIVKSVHSIV-RASVVPPKQKIEIIKALAD 288
Query: 326 CNARLQDGASEYIQ-------ILDLGS 345
R+ +G+++ IQ I D+GS
Sbjct: 289 AEFRIVEGSNDRIQLDALIARIADIGS 315
>sp|Q54E21|RFC2_DICDI Probable replication factor C subunit 2 OS=Dictyostelium discoideum
GN=rfc2 PE=3 SV=1
Length = 338
Score = 207 bits (528), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 119/318 (37%), Positives = 181/318 (56%), Gaps = 15/318 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP I D++ +E VS L+ +LP+ + GPPGTGKTS+++ L G
Sbjct: 20 LPWVEKYRPILIKDIVGNEETVSRLESISKDGNLPNIIISGPPGTGKTSSILCLARALLG 79
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y+E + ELNASDDR + V+RDK+K+FA + + P KI+ILDE DSMT
Sbjct: 80 ANYKEAVYELNASDDRTLDVVRDKIKSFAMKKVT------LPAGRHKIIILDEVDSMTSG 133
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR ME + +TRF CN + II+P+ SRC+ RF L+++ +LTRL+ + + E
Sbjct: 134 AQQALRRIMEIYSGTTRFAFACNQSTKIIEPIQSRCAVLRFTRLSDSQILTRLREVVQIE 193
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTGVIPNPWIEK- 270
V L ++ T+ GDMR+A+ LQ+ G G++N E+V +V P+P I K
Sbjct: 194 KVPYTDDGLAAIIFTAEGDMRQALNNLQAT---HSGFGLINAENVTKVCDQ-PHPLIIKQ 249
Query: 271 ---LLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
L F+ +++ L + YS+ + I S++++ + QK L+++ CN
Sbjct: 250 IIALCAKSDFKEAYPFLKKLWDDGYSSIDIISALFSITKSSNNIPEYQKLEFLKEIGFCN 309
Query: 328 ARLQDGASEYIQILDLGS 345
R G + +Q+ L S
Sbjct: 310 LRATTGVNTLVQLTGLLS 327
>sp|Q9HI47|RFCS_THEAC Replication factor C small subunit OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=rfcS PE=3 SV=2
Length = 318
Score = 207 bits (527), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 122/312 (39%), Positives = 180/312 (57%), Gaps = 19/312 (6%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
W EKYRPK++ ++ + E + LK + ++PH LF G GTGKTST IA +LFGD
Sbjct: 5 WTEKYRPKSLSEIYGEDENIQKLKSFVEKKEIPHLLFAGSVGTGKTSTAIALAIELFGDS 64
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP--FKIVILDEADSMTHA 152
++E ++E+NAS++ GI VIR+K+K A+ KP P FKI+ LDEAD +T
Sbjct: 65 WKENMVEMNASNENGIDVIRNKIKDIARI---------KPSNPLGFKILFLDEADQLTAE 115
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQAALRRTME +++TRF CNY S II P+ SR RF+P+ + + +LQ I + E
Sbjct: 116 AQAALRRTMEIYSETTRFIFSCNYSSKIIPPIQSRTVVMRFRPVPDEYISRKLQEIAKNE 175
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272
D +++ LVE S GDMR+AI LQ+ GE I + + E+ G I+K++
Sbjct: 176 GFQIDEESMHALVEVSAGDMRKAINVLQAV--YTSGE-ISPKKIYEIIGYASPEKIQKMI 232
Query: 273 K--VDSFQVLEKYIED--LILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNA 328
++ + I D LI + S + H V S S +S KQK I++ LA+
Sbjct: 233 SRAINGLFDEAREIVDGMLIYDGLSGIDIVRSLHSYVRS-SMISPKQKIEIIKALADAEF 291
Query: 329 RLQDGASEYIQI 340
R+ +G+++ IQ+
Sbjct: 292 RIVEGSNDRIQL 303
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 127,541,408
Number of Sequences: 539616
Number of extensions: 5264516
Number of successful extensions: 17974
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 676
Number of HSP's that attempted gapping in prelim test: 17233
Number of HSP's gapped (non-prelim): 1004
length of query: 355
length of database: 191,569,459
effective HSP length: 118
effective length of query: 237
effective length of database: 127,894,771
effective search space: 30311060727
effective search space used: 30311060727
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)