Query psy17903
Match_columns 355
No_of_seqs 263 out of 2994
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 17:05:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0991|consensus 100.0 4.7E-54 1E-58 352.7 26.4 321 25-354 7-330 (333)
2 KOG0989|consensus 100.0 1.7E-53 3.7E-58 363.4 30.9 319 31-351 22-345 (346)
3 PLN03025 replication factor C 100.0 4.7E-50 1E-54 365.3 36.1 313 33-354 1-316 (319)
4 PRK00440 rfc replication facto 100.0 1.7E-44 3.8E-49 330.4 37.5 311 30-350 2-316 (319)
5 PRK08451 DNA polymerase III su 100.0 8.3E-45 1.8E-49 343.3 36.0 307 33-351 2-336 (535)
6 PRK14952 DNA polymerase III su 100.0 1.3E-44 2.8E-49 346.8 35.6 307 34-349 2-362 (584)
7 PRK06305 DNA polymerase III su 100.0 2E-44 4.3E-49 339.6 34.9 311 32-352 4-351 (451)
8 PRK09111 DNA polymerase III su 100.0 4.2E-44 9.1E-49 345.2 36.4 310 30-349 9-373 (598)
9 PRK14971 DNA polymerase III su 100.0 4E-44 8.6E-49 347.8 34.8 308 33-350 5-362 (614)
10 PRK14956 DNA polymerase III su 100.0 5.7E-44 1.2E-48 331.1 33.9 310 30-349 3-368 (484)
11 PRK07003 DNA polymerase III su 100.0 7E-44 1.5E-48 341.4 34.8 308 32-349 3-357 (830)
12 PRK07764 DNA polymerase III su 100.0 5.7E-44 1.2E-48 354.4 35.0 309 32-349 2-364 (824)
13 PRK14958 DNA polymerase III su 100.0 6.3E-44 1.4E-48 339.8 33.2 308 32-349 3-355 (509)
14 PRK06645 DNA polymerase III su 100.0 1.8E-43 4E-48 334.2 36.0 312 29-349 5-370 (507)
15 PRK14965 DNA polymerase III su 100.0 5.9E-44 1.3E-48 346.0 33.4 308 32-349 3-360 (576)
16 PRK14955 DNA polymerase III su 100.0 7.1E-44 1.5E-48 332.9 32.4 308 33-349 4-372 (397)
17 PRK14964 DNA polymerase III su 100.0 2.1E-43 4.5E-48 331.1 34.4 304 34-349 2-353 (491)
18 PRK14954 DNA polymerase III su 100.0 1.8E-43 3.9E-48 341.2 34.9 310 33-351 4-374 (620)
19 PRK14961 DNA polymerase III su 100.0 5.5E-43 1.2E-47 323.5 35.1 308 32-349 3-359 (363)
20 PRK12402 replication factor C 100.0 1E-42 2.2E-47 321.2 36.5 304 32-347 2-336 (337)
21 PRK05563 DNA polymerase III su 100.0 7.5E-43 1.6E-47 336.7 35.7 308 32-349 3-359 (559)
22 PRK14960 DNA polymerase III su 100.0 6.5E-43 1.4E-47 331.8 34.1 307 33-349 3-357 (702)
23 PRK14951 DNA polymerase III su 100.0 6.7E-43 1.5E-47 336.0 34.6 307 32-348 3-362 (618)
24 PRK12323 DNA polymerase III su 100.0 5.1E-43 1.1E-47 331.7 32.4 309 31-349 2-362 (700)
25 PRK14949 DNA polymerase III su 100.0 1.1E-42 2.4E-47 339.2 34.9 308 32-349 3-356 (944)
26 PRK14970 DNA polymerase III su 100.0 4.5E-42 9.8E-47 319.5 35.3 308 32-349 4-348 (367)
27 PRK08691 DNA polymerase III su 100.0 3E-42 6.5E-47 330.3 33.6 308 32-349 3-357 (709)
28 PRK06647 DNA polymerase III su 100.0 3.7E-42 7.9E-47 330.6 34.3 309 32-350 3-358 (563)
29 TIGR02397 dnaX_nterm DNA polym 100.0 6.3E-42 1.4E-46 318.0 34.1 306 33-348 2-355 (355)
30 PRK14963 DNA polymerase III su 100.0 9.2E-42 2E-46 324.2 35.8 304 35-350 4-341 (504)
31 PRK07133 DNA polymerase III su 100.0 6.4E-42 1.4E-46 331.2 34.8 311 30-350 3-355 (725)
32 PRK07994 DNA polymerase III su 100.0 7.4E-42 1.6E-46 329.3 34.9 308 32-349 3-358 (647)
33 PRK14957 DNA polymerase III su 100.0 1E-41 2.2E-46 324.0 35.3 308 32-349 3-357 (546)
34 PRK14962 DNA polymerase III su 100.0 2E-41 4.3E-46 319.4 34.6 306 34-349 3-332 (472)
35 PRK14953 DNA polymerase III su 100.0 2.4E-41 5.2E-46 320.4 34.9 307 32-349 3-353 (486)
36 PRK14950 DNA polymerase III su 100.0 2E-41 4.3E-46 330.0 34.8 307 33-349 4-360 (585)
37 PRK14959 DNA polymerase III su 100.0 2.4E-41 5.1E-46 323.0 33.7 309 31-349 2-361 (624)
38 COG2812 DnaX DNA polymerase II 100.0 6.6E-42 1.4E-46 319.6 27.8 308 33-350 4-360 (515)
39 PRK14969 DNA polymerase III su 100.0 6.5E-41 1.4E-45 321.2 33.1 308 32-349 3-357 (527)
40 KOG2035|consensus 100.0 5.1E-41 1.1E-45 282.5 28.0 310 33-352 1-344 (351)
41 PRK05896 DNA polymerase III su 100.0 2.5E-40 5.5E-45 314.4 32.7 266 32-307 3-291 (605)
42 PRK14948 DNA polymerase III su 100.0 5.1E-40 1.1E-44 319.1 35.3 307 32-349 3-361 (620)
43 PHA02544 44 clamp loader, smal 100.0 2.7E-36 5.8E-41 275.6 34.5 297 30-352 6-314 (316)
44 KOG0990|consensus 100.0 1.8E-36 3.8E-41 260.5 23.8 326 25-354 21-354 (360)
45 PRK04132 replication factor C 100.0 1.6E-35 3.5E-40 292.0 32.9 271 69-349 567-843 (846)
46 COG2256 MGS1 ATPase related to 100.0 4.3E-35 9.2E-40 259.7 30.8 297 33-348 12-335 (436)
47 PRK04195 replication factor C 100.0 4.5E-34 9.7E-39 273.7 29.0 296 33-348 2-311 (482)
48 PRK13342 recombination factor 100.0 3.8E-32 8.2E-37 255.7 30.9 294 34-348 1-316 (413)
49 PRK13341 recombination factor 100.0 6.4E-31 1.4E-35 258.7 31.4 284 30-329 13-326 (725)
50 PRK05564 DNA polymerase III su 100.0 1.2E-30 2.6E-35 237.4 29.8 289 43-349 2-312 (313)
51 PF05496 RuvB_N: Holliday junc 100.0 3.1E-30 6.8E-35 215.0 16.9 198 29-246 8-229 (233)
52 PRK07940 DNA polymerase III su 100.0 7.3E-29 1.6E-33 229.1 27.4 292 43-351 3-393 (394)
53 KOG2028|consensus 100.0 2.5E-28 5.4E-33 213.3 23.5 301 33-348 126-465 (554)
54 PRK07399 DNA polymerase III su 100.0 1.3E-27 2.8E-32 215.3 27.4 272 43-349 2-312 (314)
55 PRK07993 DNA polymerase III su 100.0 9E-27 1.9E-31 211.4 28.8 289 49-353 6-325 (334)
56 PRK09112 DNA polymerase III su 100.0 2E-26 4.4E-31 210.3 29.8 194 37-241 15-243 (351)
57 PRK08058 DNA polymerase III su 100.0 1.1E-26 2.5E-31 211.7 25.8 288 43-348 3-327 (329)
58 PRK05707 DNA polymerase III su 100.0 9.1E-26 2E-30 204.3 30.5 276 58-353 13-327 (328)
59 PRK07471 DNA polymerase III su 100.0 8.4E-26 1.8E-30 207.3 29.6 189 39-240 13-240 (365)
60 PRK08769 DNA polymerase III su 99.9 3.2E-25 6.9E-30 198.9 27.0 275 49-353 8-312 (319)
61 PRK06871 DNA polymerase III su 99.9 1.5E-24 3.2E-29 194.8 31.2 283 49-350 6-322 (325)
62 PRK00080 ruvB Holliday junctio 99.9 1.2E-25 2.7E-30 205.8 23.9 213 30-262 10-249 (328)
63 PRK06964 DNA polymerase III su 99.9 2.4E-24 5.2E-29 194.9 29.2 273 50-350 6-340 (342)
64 COG0470 HolB ATPase involved i 99.9 6.8E-25 1.5E-29 201.3 24.8 286 45-350 1-317 (325)
65 TIGR02902 spore_lonB ATP-depen 99.9 2.8E-25 6.1E-30 214.1 19.4 231 32-263 52-332 (531)
66 PRK06090 DNA polymerase III su 99.9 5.5E-23 1.2E-27 184.3 31.6 279 49-351 7-317 (319)
67 PRK05907 hypothetical protein; 99.9 4.3E-23 9.3E-28 185.2 30.0 273 54-349 7-310 (311)
68 PRK05917 DNA polymerase III su 99.9 3.1E-23 6.7E-28 182.2 26.9 255 52-352 4-278 (290)
69 COG2255 RuvB Holliday junction 99.9 1.8E-24 4E-29 183.8 18.5 211 33-263 14-251 (332)
70 TIGR00635 ruvB Holliday juncti 99.9 1.6E-23 3.4E-28 190.5 24.0 201 42-262 1-228 (305)
71 TIGR00678 holB DNA polymerase 99.9 2.2E-24 4.7E-29 182.1 16.6 165 55-235 2-188 (188)
72 PRK07452 DNA polymerase III su 99.9 5.7E-23 1.2E-27 188.4 27.0 273 67-352 2-326 (326)
73 PRK05629 hypothetical protein; 99.9 1.9E-22 4.1E-27 183.8 28.4 267 68-349 8-315 (318)
74 PRK07132 DNA polymerase III su 99.9 3.5E-22 7.5E-27 178.0 29.0 274 51-350 2-297 (299)
75 KOG1969|consensus 99.9 1.1E-22 2.3E-27 192.1 26.3 217 31-257 257-531 (877)
76 PRK07914 hypothetical protein; 99.9 4.2E-22 9.1E-27 181.6 29.2 270 67-351 6-317 (320)
77 PF13177 DNA_pol3_delta2: DNA 99.9 2.7E-23 6E-28 170.2 13.9 140 49-197 1-162 (162)
78 PRK06585 holA DNA polymerase I 99.9 5.8E-21 1.3E-25 176.3 30.5 282 57-353 9-340 (343)
79 PRK08487 DNA polymerase III su 99.9 1E-20 2.2E-25 173.0 30.3 278 55-352 4-327 (328)
80 PRK08699 DNA polymerase III su 99.9 8.1E-21 1.7E-25 171.9 28.1 273 50-353 6-323 (325)
81 PRK08084 DNA replication initi 99.9 1E-21 2.2E-26 171.0 20.3 212 31-261 7-234 (235)
82 PRK05574 holA DNA polymerase I 99.9 2.5E-20 5.5E-25 172.1 29.8 280 55-349 6-338 (340)
83 PRK07276 DNA polymerase III su 99.9 4.2E-20 9.1E-25 163.1 27.7 260 49-344 6-289 (290)
84 PTZ00112 origin recognition co 99.9 1.6E-20 3.5E-25 182.2 26.3 268 36-306 749-1055(1164)
85 TIGR01128 holA DNA polymerase 99.9 4.1E-20 8.8E-25 167.9 27.5 254 82-348 3-302 (302)
86 PRK08727 hypothetical protein; 99.9 6.2E-21 1.4E-25 165.9 21.0 212 32-262 5-230 (233)
87 PRK06893 DNA replication initi 99.9 4.2E-21 9.2E-26 166.6 19.4 211 32-261 2-228 (229)
88 TIGR00602 rad24 checkpoint pro 99.9 5.6E-21 1.2E-25 185.0 18.6 211 29-244 68-329 (637)
89 TIGR02928 orc1/cdc6 family rep 99.9 2.6E-19 5.6E-24 167.0 28.8 238 33-273 6-284 (365)
90 PRK08903 DnaA regulatory inact 99.9 4E-20 8.6E-25 160.9 20.9 200 40-262 13-225 (227)
91 TIGR02881 spore_V_K stage V sp 99.9 1.7E-20 3.7E-25 166.3 17.8 190 44-245 5-237 (261)
92 PRK00411 cdc6 cell division co 99.9 3.4E-19 7.3E-24 167.9 27.5 290 32-325 20-351 (394)
93 COG1223 Predicted ATPase (AAA+ 99.9 9.6E-21 2.1E-25 159.0 14.8 207 37-262 113-354 (368)
94 TIGR03420 DnaA_homol_Hda DnaA 99.8 5.5E-20 1.2E-24 160.0 17.8 201 41-260 11-225 (226)
95 TIGR02903 spore_lon_C ATP-depe 99.8 1.7E-19 3.7E-24 176.7 22.9 231 33-264 142-431 (615)
96 COG1222 RPT1 ATP-dependent 26S 99.8 2.1E-19 4.4E-24 157.9 20.1 219 24-261 130-390 (406)
97 PRK05818 DNA polymerase III su 99.8 3.2E-19 6.9E-24 153.5 19.8 161 65-242 5-194 (261)
98 PRK05642 DNA replication initi 99.8 7E-19 1.5E-23 153.0 20.8 212 31-261 4-233 (234)
99 PRK06620 hypothetical protein; 99.8 7.8E-19 1.7E-23 150.2 18.6 186 43-260 14-213 (214)
100 COG1474 CDC6 Cdc6-related prot 99.8 1E-17 2.2E-22 153.7 26.9 270 34-308 9-311 (366)
101 COG1466 HolA DNA polymerase II 99.8 2.9E-17 6.4E-22 150.4 29.1 281 56-350 5-332 (334)
102 CHL00181 cbbX CbbX; Provisiona 99.8 1.1E-18 2.4E-23 155.8 18.7 190 45-246 23-254 (287)
103 PRK09087 hypothetical protein; 99.8 1.5E-18 3.2E-23 149.7 18.0 204 30-263 5-222 (226)
104 TIGR02880 cbbX_cfxQ probable R 99.8 3E-18 6.6E-23 153.1 18.5 185 46-246 23-253 (284)
105 TIGR02639 ClpA ATP-dependent C 99.8 2.4E-18 5.2E-23 172.8 19.6 220 32-262 169-428 (731)
106 PF03215 Rad17: Rad17 cell cyc 99.8 3E-18 6.5E-23 163.4 18.5 215 30-244 4-269 (519)
107 PRK14087 dnaA chromosomal repl 99.8 2.2E-17 4.9E-22 156.2 23.4 212 41-263 111-348 (450)
108 PRK14086 dnaA chromosomal repl 99.8 1.2E-16 2.7E-21 153.0 27.9 217 35-262 277-514 (617)
109 TIGR01241 FtsH_fam ATP-depende 99.8 1.1E-17 2.3E-22 161.5 20.9 212 32-262 42-294 (495)
110 TIGR00362 DnaA chromosomal rep 99.8 6.9E-17 1.5E-21 152.3 25.9 207 43-262 108-336 (405)
111 PRK00149 dnaA chromosomal repl 99.8 8.8E-17 1.9E-21 153.4 25.9 208 43-263 120-349 (450)
112 PTZ00361 26 proteosome regulat 99.8 1.5E-17 3.3E-22 155.4 18.3 215 29-262 167-423 (438)
113 KOG0733|consensus 99.8 8.9E-18 1.9E-22 156.2 16.4 182 43-243 188-407 (802)
114 KOG0730|consensus 99.8 9.6E-18 2.1E-22 157.8 16.6 208 38-265 427-676 (693)
115 KOG1970|consensus 99.8 2.8E-17 6.1E-22 151.5 18.5 207 31-244 68-321 (634)
116 CHL00176 ftsH cell division pr 99.8 5.9E-17 1.3E-21 158.4 20.7 202 42-262 180-422 (638)
117 PRK03992 proteasome-activating 99.8 9.5E-17 2.1E-21 149.8 20.3 205 41-264 127-373 (389)
118 PRK14088 dnaA chromosomal repl 99.8 5E-17 1.1E-21 153.7 18.4 208 43-262 103-331 (440)
119 CHL00195 ycf46 Ycf46; Provisio 99.8 9.5E-17 2.1E-21 152.3 20.1 206 42-265 225-465 (489)
120 PRK06581 DNA polymerase III su 99.7 3.2E-16 6.9E-21 131.9 20.3 177 54-242 2-191 (263)
121 PTZ00454 26S protease regulato 99.7 1.8E-16 4E-21 147.2 20.6 206 38-262 138-385 (398)
122 PF00308 Bac_DnaA: Bacterial d 99.7 4E-17 8.6E-22 140.4 14.7 193 43-246 6-216 (219)
123 COG2204 AtoC Response regulato 99.7 3.4E-16 7.4E-21 145.3 21.6 213 42-257 138-385 (464)
124 COG1224 TIP49 DNA helicase TIP 99.7 2.6E-16 5.7E-21 138.1 19.5 121 139-260 293-429 (450)
125 TIGR03345 VI_ClpV1 type VI sec 99.7 5.3E-17 1.2E-21 164.2 17.2 200 32-245 174-409 (852)
126 PRK12422 chromosomal replicati 99.7 1.6E-16 3.6E-21 149.8 19.1 209 39-262 104-342 (445)
127 COG0593 DnaA ATPase involved i 99.7 3.4E-16 7.3E-21 143.3 19.5 215 35-264 80-314 (408)
128 COG3829 RocR Transcriptional r 99.7 3.2E-16 6.9E-21 145.4 18.4 213 42-257 242-491 (560)
129 TIGR01817 nifA Nif-specific re 99.7 7.3E-16 1.6E-20 150.3 20.3 217 38-257 189-439 (534)
130 TIGR01242 26Sp45 26S proteasom 99.7 4.7E-16 1E-20 144.5 16.6 206 38-262 115-362 (364)
131 KOG0727|consensus 99.7 1.2E-15 2.7E-20 128.0 16.7 209 33-260 142-393 (408)
132 TIGR00763 lon ATP-dependent pr 99.7 7.3E-16 1.6E-20 155.7 18.2 202 46-263 321-586 (775)
133 PRK15424 propionate catabolism 99.7 3.4E-15 7.3E-20 143.2 21.6 214 43-257 217-479 (538)
134 TIGR02974 phageshock_pspF psp 99.7 2.4E-15 5.2E-20 137.1 19.5 206 47-255 1-242 (329)
135 PRK11608 pspF phage shock prot 99.7 3.7E-15 8E-20 136.0 20.7 211 43-256 4-250 (326)
136 PRK10820 DNA-binding transcrip 99.7 4.5E-15 9.7E-20 143.6 21.1 213 41-256 200-447 (520)
137 TIGR01243 CDC48 AAA family ATP 99.7 7.6E-16 1.7E-20 155.3 16.4 172 41-232 449-657 (733)
138 KOG0734|consensus 99.7 1.5E-15 3.1E-20 139.6 15.7 199 42-260 301-538 (752)
139 TIGR03689 pup_AAA proteasome A 99.7 8.6E-15 1.9E-19 138.9 21.4 178 32-219 169-387 (512)
140 KOG0733|consensus 99.7 1.9E-15 4.1E-20 140.9 16.2 168 42-227 508-711 (802)
141 PF06068 TIP49: TIP49 C-termin 99.7 2.5E-15 5.4E-20 134.1 16.1 103 139-242 280-395 (398)
142 KOG0731|consensus 99.7 3.8E-15 8.2E-20 144.4 18.5 204 40-261 306-551 (774)
143 TIGR02329 propionate_PrpR prop 99.7 1.2E-14 2.7E-19 139.4 21.5 216 42-260 209-467 (526)
144 PRK11388 DNA-binding transcrip 99.7 1E-14 2.3E-19 145.2 21.3 215 42-260 322-568 (638)
145 TIGR02640 gas_vesic_GvpN gas v 99.7 2.4E-14 5.3E-19 126.8 21.1 198 52-261 9-255 (262)
146 PRK11034 clpA ATP-dependent Cl 99.6 9.3E-15 2E-19 145.5 19.5 212 35-261 176-431 (758)
147 PRK05022 anaerobic nitric oxid 99.6 3E-14 6.5E-19 137.9 22.1 212 43-257 185-437 (509)
148 COG3604 FhlA Transcriptional r 99.6 2.5E-15 5.4E-20 137.7 12.9 203 43-255 221-464 (550)
149 TIGR03015 pepcterm_ATPase puta 99.6 5.9E-14 1.3E-18 125.3 21.7 204 49-263 27-266 (269)
150 COG1221 PspF Transcriptional r 99.6 7.3E-15 1.6E-19 134.2 15.7 208 42-252 75-315 (403)
151 KOG0738|consensus 99.6 4.4E-15 9.5E-20 131.8 13.6 179 43-239 210-424 (491)
152 TIGR03346 chaperone_ClpB ATP-d 99.6 5E-15 1.1E-19 151.0 15.8 201 32-246 160-396 (852)
153 CHL00095 clpC Clp protease ATP 99.6 1.5E-14 3.2E-19 147.2 19.0 197 34-245 168-400 (821)
154 KOG1942|consensus 99.6 4.6E-14 9.9E-19 121.0 17.7 121 139-260 298-435 (456)
155 PRK10865 protein disaggregatio 99.6 7.6E-15 1.6E-19 149.2 14.7 200 32-245 165-400 (857)
156 PF05673 DUF815: Protein of un 99.6 4.6E-14 9.9E-19 120.0 16.7 190 37-243 19-246 (249)
157 PRK13407 bchI magnesium chelat 99.6 5.1E-14 1.1E-18 127.6 17.8 217 40-261 3-304 (334)
158 TIGR03345 VI_ClpV1 type VI sec 99.6 3.6E-14 7.8E-19 143.9 18.3 195 45-243 566-827 (852)
159 PRK10733 hflB ATP-dependent me 99.6 4.2E-14 9.2E-19 139.8 18.3 208 34-260 141-389 (644)
160 TIGR01243 CDC48 AAA family ATP 99.6 9.4E-14 2E-18 140.2 20.9 229 41-289 174-470 (733)
161 PRK10787 DNA-binding ATP-depen 99.6 1.3E-14 2.8E-19 145.6 14.2 209 46-263 323-582 (784)
162 KOG0743|consensus 99.6 2.3E-14 5.1E-19 130.3 14.4 159 31-209 185-383 (457)
163 PLN00020 ribulose bisphosphate 99.6 2.8E-14 6.1E-19 127.7 14.5 151 65-231 146-331 (413)
164 KOG0728|consensus 99.6 4.2E-14 9.2E-19 118.7 14.6 211 32-261 134-386 (404)
165 PRK11034 clpA ATP-dependent Cl 99.6 6.1E-14 1.3E-18 139.7 17.2 189 46-241 459-710 (758)
166 COG0466 Lon ATP-dependent Lon 99.6 1.1E-13 2.4E-18 132.0 18.0 224 32-263 301-584 (782)
167 KOG0730|consensus 99.6 2.4E-13 5.2E-18 128.5 19.6 240 40-299 180-461 (693)
168 KOG0737|consensus 99.6 2.5E-14 5.5E-19 126.7 11.8 186 43-246 90-310 (386)
169 CHL00206 ycf2 Ycf2; Provisiona 99.6 7.2E-14 1.6E-18 145.4 16.8 124 140-263 1735-1877(2281)
170 COG0464 SpoVK ATPases of the A 99.6 1.8E-13 3.9E-18 132.5 18.8 207 41-265 238-485 (494)
171 KOG2227|consensus 99.6 6.3E-13 1.4E-17 121.1 20.8 202 45-246 150-379 (529)
172 KOG2004|consensus 99.6 2.2E-14 4.8E-19 136.1 11.7 186 45-245 411-644 (906)
173 CHL00095 clpC Clp protease ATP 99.6 2E-13 4.3E-18 139.0 19.5 193 45-241 509-776 (821)
174 KOG1514|consensus 99.6 4.4E-13 9.5E-18 127.4 20.3 224 47-272 398-664 (767)
175 PRK15429 formate hydrogenlyase 99.6 2.2E-13 4.8E-18 136.6 19.3 210 42-254 373-617 (686)
176 KOG0726|consensus 99.6 2.9E-14 6.4E-19 122.1 10.7 211 30-260 170-423 (440)
177 TIGR02915 PEP_resp_reg putativ 99.5 4.6E-13 1E-17 128.2 20.1 212 43-257 137-383 (445)
178 PRK10923 glnG nitrogen regulat 99.5 6.6E-13 1.4E-17 128.0 21.1 213 43-258 136-383 (469)
179 TIGR03346 chaperone_ClpB ATP-d 99.5 2.4E-13 5.2E-18 138.8 18.8 196 45-244 565-823 (852)
180 KOG0736|consensus 99.5 9.7E-14 2.1E-18 132.8 14.6 170 42-231 669-878 (953)
181 KOG0739|consensus 99.5 5.5E-14 1.2E-18 120.8 11.4 172 43-231 131-334 (439)
182 PF00004 AAA: ATPase family as 99.5 5.3E-14 1.1E-18 111.4 10.4 108 69-193 1-130 (132)
183 TIGR02639 ClpA ATP-dependent C 99.5 2.5E-13 5.5E-18 136.7 17.8 190 45-241 454-706 (731)
184 PRK08485 DNA polymerase III su 99.5 1.5E-13 3.3E-18 112.7 13.2 129 104-245 33-174 (206)
185 KOG0742|consensus 99.5 4.3E-13 9.3E-18 120.0 16.5 151 44-211 354-530 (630)
186 PRK10865 protein disaggregatio 99.5 6.3E-13 1.4E-17 135.3 19.8 193 44-242 567-824 (857)
187 KOG0729|consensus 99.5 1.9E-13 4E-18 115.9 13.2 208 33-260 165-415 (435)
188 PRK15115 response regulator Gl 99.5 1.5E-12 3.3E-17 124.6 20.9 212 46-260 135-381 (444)
189 KOG0652|consensus 99.5 3.6E-13 7.8E-18 113.8 13.9 200 42-260 168-409 (424)
190 COG0465 HflB ATP-dependent Zn 99.5 3.4E-13 7.4E-18 128.7 14.9 201 41-260 146-387 (596)
191 CHL00081 chlI Mg-protoporyphyr 99.5 2.1E-12 4.5E-17 117.3 19.1 226 36-262 7-321 (350)
192 KOG1968|consensus 99.5 1.8E-13 3.9E-18 136.6 13.1 206 32-244 307-537 (871)
193 TIGR02030 BchI-ChlI magnesium 99.5 1.9E-12 4E-17 117.7 18.3 218 44-261 3-307 (337)
194 PRK14700 recombination factor 99.5 5.1E-12 1.1E-16 110.5 19.7 181 166-348 7-212 (300)
195 PRK11361 acetoacetate metaboli 99.5 6.9E-12 1.5E-16 120.6 22.5 212 44-258 142-388 (457)
196 COG0542 clpA ATP-binding subun 99.5 4.6E-13 1E-17 131.0 14.4 191 45-241 491-749 (786)
197 PRK13531 regulatory ATPase Rav 99.5 3.8E-12 8.3E-17 118.9 19.5 210 45-262 20-282 (498)
198 COG3283 TyrR Transcriptional r 99.5 1.6E-12 3.5E-17 114.5 15.4 206 43-257 202-443 (511)
199 PRK05342 clpX ATP-dependent pr 99.5 6.3E-13 1.4E-17 124.0 13.5 189 44-242 69-374 (412)
200 TIGR01818 ntrC nitrogen regula 99.5 1.2E-11 2.6E-16 119.1 22.0 214 44-260 133-381 (463)
201 PF01637 Arch_ATPase: Archaeal 99.4 2.1E-12 4.5E-17 112.5 14.3 188 47-237 1-233 (234)
202 KOG2680|consensus 99.4 3.5E-12 7.6E-17 109.9 15.1 120 139-259 290-425 (454)
203 KOG0735|consensus 99.4 4.8E-12 1E-16 120.4 16.8 179 42-239 664-877 (952)
204 COG2607 Predicted ATPase (AAA+ 99.4 7.5E-12 1.6E-16 104.8 15.8 189 39-244 54-279 (287)
205 cd00009 AAA The AAA+ (ATPases 99.4 3.3E-12 7.2E-17 102.6 13.5 138 48-194 1-150 (151)
206 TIGR02442 Cob-chelat-sub cobal 99.4 9E-12 2E-16 123.3 19.0 213 44-260 3-301 (633)
207 KOG0732|consensus 99.4 7.7E-12 1.7E-16 125.0 17.2 191 41-244 261-486 (1080)
208 KOG0740|consensus 99.4 7.4E-12 1.6E-16 114.9 14.7 179 37-232 145-356 (428)
209 KOG0735|consensus 99.4 1.1E-10 2.4E-15 111.2 22.4 223 67-299 432-694 (952)
210 TIGR00764 lon_rel lon-related 99.4 1.6E-11 3.4E-16 120.5 17.1 126 136-261 216-389 (608)
211 TIGR01650 PD_CobS cobaltochela 99.4 2.7E-11 6E-16 108.3 16.5 177 38-227 38-251 (327)
212 COG3284 AcoR Transcriptional a 99.4 1.6E-11 3.5E-16 116.3 15.0 246 49-304 317-602 (606)
213 TIGR00382 clpX endopeptidase C 99.3 3.1E-11 6.7E-16 112.1 15.5 187 46-242 78-380 (413)
214 PRK10365 transcriptional regul 99.3 1.4E-10 3E-15 111.0 20.6 211 46-259 140-385 (441)
215 PF05621 TniB: Bacterial TniB 99.3 4.7E-11 1E-15 104.9 15.3 215 46-260 35-286 (302)
216 TIGR00390 hslU ATP-dependent p 99.3 3.7E-11 7.9E-16 110.3 14.9 109 136-244 246-402 (441)
217 PRK13765 ATP-dependent proteas 99.3 4.5E-11 9.7E-16 116.9 16.4 126 136-261 225-398 (637)
218 PF06144 DNA_pol3_delta: DNA p 99.3 1.5E-11 3.2E-16 102.2 10.1 163 69-244 1-172 (172)
219 KOG0744|consensus 99.3 6E-11 1.3E-15 103.5 13.7 156 44-210 141-341 (423)
220 PF00158 Sigma54_activat: Sigm 99.3 4.8E-11 1E-15 98.1 12.0 128 47-177 1-144 (168)
221 PRK05201 hslU ATP-dependent pr 99.3 8E-11 1.7E-15 108.1 14.2 108 137-244 249-404 (443)
222 KOG0651|consensus 99.3 4.4E-11 9.6E-16 103.7 11.1 170 43-230 130-339 (388)
223 COG0714 MoxR-like ATPases [Gen 99.3 1.4E-10 2.9E-15 106.5 14.8 154 46-206 25-199 (329)
224 PF07728 AAA_5: AAA domain (dy 99.3 3.5E-12 7.6E-17 102.1 3.7 116 68-188 1-139 (139)
225 COG0542 clpA ATP-binding subun 99.2 1.1E-10 2.4E-15 114.6 12.9 199 33-246 158-393 (786)
226 PHA02244 ATPase-like protein 99.2 2.5E-10 5.4E-15 103.4 14.1 129 55-198 110-263 (383)
227 TIGR00368 Mg chelatase-related 99.2 6E-10 1.3E-14 106.6 17.5 216 42-261 189-497 (499)
228 smart00350 MCM minichromosome 99.2 1.3E-09 2.9E-14 105.4 19.9 153 46-207 204-398 (509)
229 TIGR02031 BchD-ChlD magnesium 99.2 8.8E-10 1.9E-14 108.1 18.0 194 63-261 13-256 (589)
230 PF01078 Mg_chelatase: Magnesi 99.2 7.5E-11 1.6E-15 98.5 8.9 128 43-176 1-158 (206)
231 PRK11331 5-methylcytosine-spec 99.2 8.5E-10 1.8E-14 102.6 14.6 150 44-206 174-369 (459)
232 PF07724 AAA_2: AAA domain (Cd 99.1 6.1E-11 1.3E-15 97.8 6.1 103 68-177 5-130 (171)
233 PTZ00111 DNA replication licen 99.1 1E-08 2.2E-13 102.5 20.8 136 46-189 451-635 (915)
234 PF13173 AAA_14: AAA domain 99.1 3E-09 6.6E-14 83.7 12.1 119 68-201 4-127 (128)
235 smart00763 AAA_PrkA PrkA AAA d 99.1 4.5E-09 9.7E-14 95.3 14.7 91 136-226 235-347 (361)
236 PF00931 NB-ARC: NB-ARC domain 99.1 3.4E-09 7.3E-14 95.5 13.9 188 50-242 1-206 (287)
237 PF14532 Sigma54_activ_2: Sigm 99.0 4.1E-10 8.8E-15 89.9 6.7 107 48-177 1-110 (138)
238 KOG0741|consensus 99.0 9.2E-10 2E-14 101.9 9.3 177 43-228 217-436 (744)
239 PF08542 Rep_fac_C: Replicatio 99.0 7.3E-09 1.6E-13 75.9 12.0 83 264-347 4-89 (89)
240 COG1239 ChlI Mg-chelatase subu 99.0 2.1E-08 4.6E-13 91.4 16.9 165 44-209 16-232 (423)
241 COG3267 ExeA Type II secretory 99.0 2.4E-08 5.2E-13 85.0 14.7 200 50-256 36-266 (269)
242 PRK09862 putative ATP-dependen 99.0 2.7E-08 5.8E-13 95.0 16.1 217 42-261 188-490 (506)
243 KOG2170|consensus 99.0 2.2E-08 4.9E-13 86.9 14.0 125 47-179 84-227 (344)
244 PF07726 AAA_3: ATPase family 98.9 3.4E-10 7.4E-15 86.7 2.2 89 68-165 1-90 (131)
245 PRK12377 putative replication 98.9 5.2E-09 1.1E-13 91.2 9.6 129 38-177 67-206 (248)
246 COG1219 ClpX ATP-dependent pro 98.9 1.9E-08 4.1E-13 88.0 12.8 187 46-242 62-363 (408)
247 COG4650 RtcR Sigma54-dependent 98.9 1.3E-08 2.8E-13 88.1 11.0 192 69-261 211-441 (531)
248 PRK08116 hypothetical protein; 98.9 7.8E-09 1.7E-13 91.7 9.0 147 37-198 77-251 (268)
249 COG0606 Predicted ATPase with 98.9 8.2E-08 1.8E-12 88.9 14.9 119 41-164 175-310 (490)
250 COG1220 HslU ATP-dependent pro 98.9 8E-08 1.7E-12 84.7 14.1 107 137-243 250-404 (444)
251 KOG1051|consensus 98.8 2E-08 4.4E-13 100.2 11.4 118 45-177 562-711 (898)
252 PRK08181 transposase; Validate 98.8 1.9E-08 4.2E-13 88.8 9.8 108 57-177 99-209 (269)
253 PRK07952 DNA replication prote 98.8 2.2E-08 4.8E-13 87.1 9.9 127 36-177 63-205 (244)
254 smart00382 AAA ATPases associa 98.8 6.6E-08 1.4E-12 76.7 11.9 95 67-176 3-125 (148)
255 PRK13406 bchD magnesium chelat 98.8 2E-07 4.3E-12 90.9 17.1 205 50-261 8-248 (584)
256 PRK06526 transposase; Provisio 98.8 1.2E-08 2.6E-13 89.6 7.8 122 67-198 99-236 (254)
257 PF05729 NACHT: NACHT domain 98.8 5.8E-08 1.3E-12 79.7 11.0 142 69-210 3-164 (166)
258 KOG0745|consensus 98.8 7.1E-08 1.5E-12 87.6 11.3 87 67-163 227-331 (564)
259 KOG0736|consensus 98.8 5.8E-07 1.3E-11 87.2 18.1 224 47-287 403-687 (953)
260 PRK04841 transcriptional regul 98.8 6.5E-07 1.4E-11 93.6 19.9 191 41-241 10-228 (903)
261 PLN03210 Resistant to P. syrin 98.8 6.1E-07 1.3E-11 95.5 19.6 193 42-238 181-395 (1153)
262 PF13401 AAA_22: AAA domain; P 98.7 3.3E-08 7.1E-13 78.0 6.9 107 68-176 6-125 (131)
263 PF01695 IstB_IS21: IstB-like 98.7 4.7E-08 1E-12 81.2 6.6 94 67-177 48-150 (178)
264 PF12774 AAA_6: Hydrolytic ATP 98.7 4.1E-06 9E-11 72.4 18.7 138 55-216 23-184 (231)
265 PF14516 AAA_35: AAA-like doma 98.6 1.8E-05 3.9E-10 72.6 23.0 201 47-258 13-255 (331)
266 COG1618 Predicted nucleotide k 98.6 8.7E-07 1.9E-11 70.3 12.0 125 69-208 8-171 (179)
267 PRK06835 DNA replication prote 98.6 3E-07 6.5E-12 83.6 10.5 132 53-195 168-316 (329)
268 PRK04132 replication factor C 98.6 2.4E-08 5.2E-13 100.3 3.6 52 31-82 5-56 (846)
269 PF12775 AAA_7: P-loop contain 98.6 1.4E-07 3E-12 83.8 7.7 148 56-211 25-195 (272)
270 PRK06921 hypothetical protein; 98.6 5.7E-07 1.2E-11 79.7 10.5 100 66-177 117-225 (266)
271 PHA00729 NTP-binding motif con 98.6 3.5E-07 7.7E-12 77.9 8.7 126 57-207 8-138 (226)
272 PRK08939 primosomal protein Dn 98.5 1.9E-07 4.2E-12 84.2 7.4 122 41-177 123-261 (306)
273 COG1241 MCM2 Predicted ATPase 98.5 2.5E-06 5.4E-11 83.6 15.5 136 45-191 286-463 (682)
274 PRK09183 transposase/IS protei 98.5 3.6E-07 7.8E-12 80.7 8.3 97 67-177 103-206 (259)
275 KOG0741|consensus 98.5 2.2E-06 4.9E-11 80.0 13.1 152 69-243 541-720 (744)
276 PF13191 AAA_16: AAA ATPase do 98.5 1.2E-07 2.7E-12 79.3 4.7 48 46-93 1-51 (185)
277 KOG0482|consensus 98.5 4.1E-06 8.8E-11 77.8 14.4 284 33-329 330-709 (721)
278 PF12169 DNA_pol3_gamma3: DNA 98.4 3.6E-06 7.8E-11 67.5 11.4 99 251-349 1-129 (143)
279 PF10443 RNA12: RNA12 protein; 98.4 3.6E-05 7.7E-10 71.2 18.8 107 137-244 148-284 (431)
280 COG1484 DnaC DNA replication p 98.4 1.4E-06 2.9E-11 76.7 9.3 116 51-177 89-209 (254)
281 PRK15455 PrkA family serine pr 98.4 6.2E-05 1.3E-09 72.3 20.6 50 42-91 73-128 (644)
282 KOG0480|consensus 98.4 2.9E-06 6.3E-11 80.8 11.4 135 44-189 344-520 (764)
283 TIGR02688 conserved hypothetic 98.4 2.6E-05 5.7E-10 72.2 17.3 94 59-176 204-312 (449)
284 PF13604 AAA_30: AAA domain; P 98.4 3.5E-06 7.6E-11 71.3 10.9 121 51-177 4-131 (196)
285 KOG0478|consensus 98.4 8.5E-06 1.8E-10 78.3 13.8 118 68-199 464-616 (804)
286 KOG2543|consensus 98.3 3.9E-05 8.6E-10 69.2 16.4 196 45-255 6-247 (438)
287 PF03266 NTPase_1: NTPase; In 98.3 6E-07 1.3E-11 73.8 4.6 61 139-202 97-164 (168)
288 KOG2228|consensus 98.3 9.2E-06 2E-10 72.0 11.9 164 46-209 25-219 (408)
289 KOG0477|consensus 98.3 2.6E-05 5.6E-10 74.3 15.2 205 46-261 450-731 (854)
290 PHA02774 E1; Provisional 98.3 6.6E-06 1.4E-10 78.8 11.5 138 52-215 419-587 (613)
291 COG1373 Predicted ATPase (AAA+ 98.3 0.0001 2.2E-09 69.3 18.9 133 52-203 24-161 (398)
292 PF07693 KAP_NTPase: KAP famil 98.3 0.00012 2.5E-09 67.2 18.9 108 137-245 172-321 (325)
293 COG5271 MDN1 AAA ATPase contai 98.3 1.5E-05 3.2E-10 83.3 13.5 146 69-228 891-1061(4600)
294 PF00493 MCM: MCM2/3/5 family 98.3 8.7E-07 1.9E-11 81.2 4.6 139 46-197 25-209 (331)
295 PF00910 RNA_helicase: RNA hel 98.2 3.6E-06 7.7E-11 63.9 7.0 72 69-163 1-79 (107)
296 COG2909 MalT ATP-dependent tra 98.2 0.00036 7.7E-09 69.3 21.8 190 40-236 14-231 (894)
297 PTZ00202 tuzin; Provisional 98.2 8E-05 1.7E-09 69.1 16.3 52 40-91 257-311 (550)
298 COG5271 MDN1 AAA ATPase contai 98.2 6.3E-05 1.4E-09 78.9 15.9 227 55-306 1534-1809(4600)
299 PRK10536 hypothetical protein; 98.1 6.3E-05 1.4E-09 65.4 13.1 44 44-89 54-97 (262)
300 PF06309 Torsin: Torsin; Inte 98.1 1.9E-05 4E-10 60.7 8.5 56 46-101 26-88 (127)
301 PF03969 AFG1_ATPase: AFG1-lik 98.0 9.4E-06 2E-10 74.9 6.7 116 67-196 63-201 (362)
302 PHA02624 large T antigen; Prov 98.0 2.7E-05 5.9E-10 75.0 10.0 116 55-195 419-561 (647)
303 PRK04296 thymidine kinase; Pro 98.0 3.8E-05 8.3E-10 64.7 9.7 93 69-176 5-115 (190)
304 PF10236 DAP3: Mitochondrial r 98.0 0.00057 1.2E-08 62.0 16.4 48 190-237 258-308 (309)
305 COG2842 Uncharacterized ATPase 97.9 0.0002 4.4E-09 62.8 12.1 185 43-246 70-279 (297)
306 PF09848 DUF2075: Uncharacteri 97.9 2.5E-05 5.5E-10 72.4 6.9 92 69-163 4-117 (352)
307 PF05272 VirE: Virulence-assoc 97.9 0.00019 4E-09 60.7 11.1 99 69-195 55-169 (198)
308 cd01120 RecA-like_NTPases RecA 97.9 0.00012 2.5E-09 59.6 9.6 24 69-92 2-25 (165)
309 PRK12723 flagellar biosynthesi 97.9 0.00012 2.6E-09 68.1 10.6 139 69-211 177-337 (388)
310 KOG4658|consensus 97.9 0.00024 5.2E-09 73.0 13.7 187 48-243 161-367 (889)
311 KOG0481|consensus 97.8 0.0013 2.8E-08 61.7 16.6 106 46-163 332-454 (729)
312 PF00448 SRP54: SRP54-type pro 97.8 6.6E-05 1.4E-09 63.4 7.3 108 69-177 4-126 (196)
313 PF12780 AAA_8: P-loop contain 97.8 0.00097 2.1E-08 59.1 14.9 152 46-211 9-212 (268)
314 PF04851 ResIII: Type III rest 97.8 0.00021 4.6E-09 59.3 10.3 44 49-92 7-51 (184)
315 PF04665 Pox_A32: Poxvirus A32 97.8 0.00073 1.6E-08 58.4 13.2 131 68-207 15-168 (241)
316 KOG3347|consensus 97.7 1.6E-05 3.5E-10 62.2 2.1 26 65-90 6-31 (176)
317 PF02562 PhoH: PhoH-like prote 97.7 6.2E-05 1.3E-09 63.5 5.7 36 138-176 120-155 (205)
318 COG3899 Predicted ATPase [Gene 97.7 0.0051 1.1E-07 63.5 20.6 104 139-244 156-266 (849)
319 TIGR01618 phage_P_loop phage n 97.7 8.2E-05 1.8E-09 63.6 6.3 20 69-88 15-34 (220)
320 COG1419 FlhF Flagellar GTP-bin 97.7 0.00056 1.2E-08 63.0 11.7 137 69-209 206-361 (407)
321 PRK11889 flhF flagellar biosyn 97.7 0.00024 5.1E-09 65.5 9.2 26 69-94 244-269 (436)
322 COG4088 Predicted nucleotide k 97.7 0.00023 5E-09 59.1 7.8 30 67-96 2-31 (261)
323 PF13207 AAA_17: AAA domain; P 97.6 5.9E-05 1.3E-09 58.4 4.2 22 69-90 2-23 (121)
324 cd00046 DEXDc DEAD-like helica 97.6 0.0002 4.3E-09 56.3 7.3 25 68-92 2-26 (144)
325 TIGR01448 recD_rel helicase, p 97.6 0.00065 1.4E-08 68.7 12.5 120 50-176 325-452 (720)
326 TIGR01447 recD exodeoxyribonuc 97.6 0.00065 1.4E-08 66.9 12.1 105 68-176 162-295 (586)
327 TIGR02858 spore_III_AA stage I 97.6 0.00029 6.2E-09 62.5 8.7 35 58-92 103-137 (270)
328 PRK14974 cell division protein 97.6 0.00047 1E-08 63.0 10.3 25 69-93 143-167 (336)
329 PRK05703 flhF flagellar biosyn 97.6 0.00063 1.4E-08 64.4 11.4 23 69-91 224-246 (424)
330 PF10923 DUF2791: P-loop Domai 97.6 0.0032 6.9E-08 58.9 15.4 91 138-228 240-371 (416)
331 PRK10875 recD exonuclease V su 97.6 0.00088 1.9E-08 66.2 12.4 104 69-176 170-301 (615)
332 KOG1051|consensus 97.6 0.00078 1.7E-08 68.2 12.0 171 44-223 185-381 (898)
333 PRK13695 putative NTPase; Prov 97.6 0.00099 2.1E-08 55.2 10.7 69 138-209 97-172 (174)
334 TIGR01359 UMP_CMP_kin_fam UMP- 97.6 0.0014 3E-08 54.7 11.6 23 69-91 2-24 (183)
335 PF05970 PIF1: PIF1-like helic 97.5 0.0005 1.1E-08 64.0 9.6 43 50-92 6-48 (364)
336 TIGR02237 recomb_radB DNA repa 97.5 0.00061 1.3E-08 58.2 9.4 52 61-115 5-58 (209)
337 PRK06067 flagellar accessory p 97.5 0.0013 2.8E-08 57.3 11.3 35 56-90 13-49 (234)
338 cd00561 CobA_CobO_BtuR ATP:cor 97.5 0.0007 1.5E-08 54.8 8.8 42 137-178 95-139 (159)
339 TIGR02768 TraA_Ti Ti-type conj 97.5 0.0003 6.4E-09 71.4 7.8 115 50-175 354-475 (744)
340 PF13671 AAA_33: AAA domain; P 97.5 7.7E-05 1.7E-09 59.6 2.9 23 69-91 2-24 (143)
341 cd01124 KaiC KaiC is a circadi 97.5 0.00083 1.8E-08 56.2 9.3 23 69-91 2-24 (187)
342 cd01121 Sms Sms (bacterial rad 97.5 0.0007 1.5E-08 62.9 9.3 49 55-105 69-119 (372)
343 PRK13889 conjugal transfer rel 97.4 0.00048 1E-08 71.2 8.7 115 50-175 348-469 (988)
344 PF05707 Zot: Zonular occluden 97.4 0.00013 2.9E-09 61.5 3.9 58 138-195 80-145 (193)
345 TIGR03574 selen_PSTK L-seryl-t 97.4 0.00098 2.1E-08 58.7 9.4 24 69-92 2-25 (249)
346 PRK09435 membrane ATPase/prote 97.4 0.0057 1.2E-07 55.8 14.4 39 69-107 59-97 (332)
347 PF00519 PPV_E1_C: Papillomavi 97.4 0.0011 2.3E-08 60.7 9.4 118 53-196 248-383 (432)
348 PRK14532 adenylate kinase; Pro 97.4 0.0038 8.3E-08 52.3 12.5 24 68-91 2-25 (188)
349 COG1485 Predicted ATPase [Gene 97.4 0.0005 1.1E-08 61.9 7.1 121 69-196 68-204 (367)
350 cd02021 GntK Gluconate kinase 97.4 0.00073 1.6E-08 54.4 7.6 22 69-90 2-23 (150)
351 PRK00771 signal recognition pa 97.4 0.0015 3.2E-08 61.9 10.4 35 69-103 98-132 (437)
352 PRK08118 topology modulation p 97.4 0.00022 4.7E-09 58.7 4.3 25 68-92 3-27 (167)
353 TIGR03878 thermo_KaiC_2 KaiC d 97.4 0.00089 1.9E-08 59.3 8.4 22 69-90 39-60 (259)
354 smart00487 DEXDc DEAD-like hel 97.3 0.0014 3.1E-08 54.6 9.0 38 51-90 11-49 (201)
355 PRK11823 DNA repair protein Ra 97.3 0.0014 2.9E-08 62.7 9.6 49 55-105 67-117 (446)
356 COG3854 SpoIIIAA ncharacterize 97.3 0.0021 4.5E-08 54.5 9.4 28 66-93 137-164 (308)
357 COG1066 Sms Predicted ATP-depe 97.3 0.0037 8E-08 57.5 11.7 50 54-106 79-130 (456)
358 PRK12727 flagellar biosynthesi 97.3 0.0032 7E-08 60.4 11.7 23 69-91 353-375 (559)
359 COG2884 FtsE Predicted ATPase 97.3 0.0042 9.1E-08 51.2 10.6 55 138-193 156-212 (223)
360 TIGR02012 tigrfam_recA protein 97.3 0.0024 5.3E-08 57.9 10.4 36 56-91 42-80 (321)
361 PF13479 AAA_24: AAA domain 97.3 0.00026 5.6E-09 60.8 3.9 19 68-86 5-23 (213)
362 PRK06762 hypothetical protein; 97.3 0.0046 1E-07 50.7 11.3 22 69-90 5-26 (166)
363 PRK08533 flagellar accessory p 97.3 0.0023 4.9E-08 55.6 9.7 22 69-90 27-48 (230)
364 PF13245 AAA_19: Part of AAA d 97.3 0.0012 2.6E-08 46.4 6.5 24 68-91 12-35 (76)
365 KOG1808|consensus 97.3 0.0013 2.9E-08 71.0 9.5 150 52-210 427-600 (1856)
366 PRK12726 flagellar biosynthesi 97.3 0.0017 3.7E-08 59.8 9.1 25 69-93 209-233 (407)
367 PRK05800 cobU adenosylcobinami 97.2 0.0027 5.8E-08 52.4 9.4 23 68-90 3-25 (170)
368 PRK05986 cob(I)alamin adenolsy 97.2 0.0021 4.6E-08 53.5 8.7 42 137-178 115-159 (191)
369 cd01128 rho_factor Transcripti 97.2 0.0014 3.1E-08 57.4 8.1 26 68-93 18-43 (249)
370 TIGR00708 cobA cob(I)alamin ad 97.2 0.0046 1E-07 50.7 10.5 39 137-178 97-141 (173)
371 PF13086 AAA_11: AAA domain; P 97.2 0.0008 1.7E-08 58.2 6.3 39 50-90 3-41 (236)
372 cd01394 radB RadB. The archaea 97.2 0.0059 1.3E-07 52.5 11.6 48 56-105 7-56 (218)
373 PRK13826 Dtr system oriT relax 97.2 0.0012 2.7E-08 68.7 8.1 115 50-175 383-504 (1102)
374 PRK12724 flagellar biosynthesi 97.2 0.0025 5.3E-08 59.6 9.2 22 69-90 226-247 (432)
375 PRK13900 type IV secretion sys 97.2 0.016 3.4E-07 53.2 14.4 38 53-92 149-186 (332)
376 TIGR01613 primase_Cterm phage/ 97.1 0.014 3.1E-07 52.9 13.9 132 45-195 48-203 (304)
377 cd00983 recA RecA is a bacter 97.1 0.0054 1.2E-07 55.7 10.8 36 56-91 42-80 (325)
378 PRK07261 topology modulation p 97.1 0.0016 3.4E-08 53.9 6.8 24 69-92 3-26 (171)
379 cd01123 Rad51_DMC1_radA Rad51_ 97.1 0.0032 7E-08 54.8 9.2 63 57-119 8-76 (235)
380 COG4178 ABC-type uncharacteriz 97.1 0.0026 5.7E-08 61.8 9.2 40 138-177 534-574 (604)
381 cd00267 ABC_ATPase ABC (ATP-bi 97.1 0.0041 8.8E-08 50.5 9.2 96 68-178 27-141 (157)
382 PF01443 Viral_helicase1: Vira 97.1 0.00073 1.6E-08 58.7 5.0 22 69-90 1-22 (234)
383 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0031 6.6E-08 55.1 8.8 35 56-90 9-45 (237)
384 PRK14722 flhF flagellar biosyn 97.1 0.0023 4.9E-08 59.3 8.3 22 69-90 140-161 (374)
385 COG2804 PulE Type II secretory 97.1 0.0026 5.7E-08 60.1 8.7 55 40-96 233-288 (500)
386 cd01131 PilT Pilus retraction 97.1 0.0056 1.2E-07 51.8 10.1 24 69-92 4-27 (198)
387 cd01393 recA_like RecA is a b 97.1 0.0067 1.5E-07 52.4 10.8 63 56-118 7-75 (226)
388 COG0529 CysC Adenylylsulfate k 97.1 0.0062 1.4E-07 49.5 9.5 27 69-95 26-52 (197)
389 PRK06731 flhF flagellar biosyn 97.1 0.0047 1E-07 54.7 9.8 26 67-92 76-101 (270)
390 PRK00131 aroK shikimate kinase 97.1 0.00083 1.8E-08 55.4 4.8 24 68-91 6-29 (175)
391 PRK06696 uridine kinase; Valid 97.1 0.0011 2.4E-08 57.3 5.7 43 50-92 3-48 (223)
392 PRK04328 hypothetical protein; 97.1 0.0042 9E-08 54.7 9.3 35 56-90 11-47 (249)
393 PRK03839 putative kinase; Prov 97.0 0.00067 1.4E-08 56.5 4.1 22 69-90 3-24 (180)
394 cd02020 CMPK Cytidine monophos 97.0 0.024 5.3E-07 45.1 13.1 22 69-90 2-23 (147)
395 TIGR00416 sms DNA repair prote 97.0 0.0049 1.1E-07 59.0 10.2 50 54-105 80-131 (454)
396 PRK14527 adenylate kinase; Pro 97.0 0.007 1.5E-07 50.9 10.0 25 68-92 8-32 (191)
397 PF13238 AAA_18: AAA domain; P 97.0 0.00062 1.4E-08 53.0 3.4 22 69-90 1-22 (129)
398 PRK10416 signal recognition pa 97.0 0.0062 1.3E-07 55.5 10.2 25 69-93 117-141 (318)
399 PRK06547 hypothetical protein; 97.0 0.0016 3.5E-08 53.7 5.9 33 60-92 9-41 (172)
400 PRK14528 adenylate kinase; Pro 97.0 0.0034 7.3E-08 52.6 7.9 25 67-91 2-26 (186)
401 PRK09354 recA recombinase A; P 97.0 0.0085 1.8E-07 54.9 11.0 36 56-91 47-85 (349)
402 PRK13947 shikimate kinase; Pro 97.0 0.00096 2.1E-08 55.0 4.6 25 68-92 3-27 (171)
403 PRK09376 rho transcription ter 97.0 0.0021 4.6E-08 59.3 7.0 26 68-93 171-196 (416)
404 cd03115 SRP The signal recogni 97.0 0.0035 7.7E-08 51.8 7.9 25 69-93 3-27 (173)
405 TIGR02788 VirB11 P-type DNA tr 97.0 0.0082 1.8E-07 54.6 10.8 25 67-91 145-169 (308)
406 PF01745 IPT: Isopentenyl tran 97.0 0.0017 3.7E-08 54.5 5.7 143 69-228 4-160 (233)
407 PRK14737 gmk guanylate kinase; 97.0 0.016 3.5E-07 48.5 11.7 22 69-90 7-28 (186)
408 COG1067 LonB Predicted ATP-dep 97.0 0.0045 9.7E-08 61.2 9.4 227 36-262 95-398 (647)
409 PRK13808 adenylate kinase; Pro 97.0 0.014 3E-07 53.1 11.9 24 68-91 2-25 (333)
410 PRK00625 shikimate kinase; Pro 97.0 0.001 2.2E-08 54.9 4.3 24 68-91 2-25 (173)
411 cd02019 NK Nucleoside/nucleoti 96.9 0.00099 2.2E-08 45.9 3.5 22 69-90 2-23 (69)
412 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.9 0.0097 2.1E-07 47.6 9.8 94 68-178 28-128 (144)
413 PRK13709 conjugal transfer nic 96.9 0.012 2.6E-07 64.5 13.1 123 50-176 969-1099(1747)
414 PHA02530 pseT polynucleotide k 96.9 0.0058 1.2E-07 55.4 9.4 22 69-90 5-26 (300)
415 PF00406 ADK: Adenylate kinase 96.9 0.0065 1.4E-07 49.0 8.7 20 71-90 1-20 (151)
416 PRK05973 replicative DNA helic 96.9 0.0062 1.3E-07 52.8 8.9 23 69-91 67-89 (237)
417 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0022 4.7E-08 50.3 5.5 24 69-92 25-48 (133)
418 PRK14712 conjugal transfer nic 96.9 0.012 2.5E-07 63.8 12.5 123 50-176 837-967 (1623)
419 PRK10263 DNA translocase FtsK; 96.9 0.017 3.6E-07 60.8 13.2 70 138-207 1141-1218(1355)
420 cd03281 ABC_MSH5_euk MutS5 hom 96.9 0.0093 2E-07 51.1 9.9 21 68-88 31-51 (213)
421 TIGR02782 TrbB_P P-type conjug 96.9 0.0026 5.7E-08 57.4 6.6 49 42-92 106-158 (299)
422 TIGR00767 rho transcription te 96.9 0.0028 6E-08 58.8 6.8 26 68-93 170-195 (415)
423 COG1119 ModF ABC-type molybden 96.9 0.0088 1.9E-07 51.3 9.2 48 137-184 189-240 (257)
424 TIGR03499 FlhF flagellar biosy 96.9 0.0024 5.3E-08 57.2 6.3 23 69-91 197-219 (282)
425 PRK07667 uridine kinase; Provi 96.9 0.0026 5.6E-08 53.7 6.1 39 57-95 6-46 (193)
426 PRK13894 conjugal transfer ATP 96.9 0.0096 2.1E-07 54.2 10.1 47 42-90 122-172 (319)
427 cd03247 ABCC_cytochrome_bd The 96.9 0.015 3.3E-07 48.2 10.7 44 137-180 116-160 (178)
428 PF08433 KTI12: Chromatin asso 96.8 0.003 6.6E-08 56.0 6.6 74 67-150 2-83 (270)
429 COG1936 Predicted nucleotide k 96.8 0.0012 2.6E-08 53.4 3.6 22 68-90 2-23 (180)
430 PRK06217 hypothetical protein; 96.8 0.0013 2.9E-08 54.9 4.1 25 68-92 3-27 (183)
431 cd03238 ABC_UvrA The excision 96.8 0.0092 2E-07 49.5 9.0 41 138-178 108-150 (176)
432 cd03216 ABC_Carb_Monos_I This 96.8 0.012 2.5E-07 48.2 9.5 97 68-178 28-143 (163)
433 PRK12608 transcription termina 96.8 0.0038 8.2E-08 57.5 7.1 30 64-93 131-160 (380)
434 TIGR00064 ftsY signal recognit 96.8 0.0045 9.6E-08 55.1 7.4 35 69-103 75-109 (272)
435 cd03214 ABC_Iron-Siderophores_ 96.8 0.0025 5.5E-08 53.1 5.5 42 137-178 115-159 (180)
436 TIGR01663 PNK-3'Pase polynucle 96.8 0.004 8.7E-08 60.3 7.5 22 69-90 372-393 (526)
437 KOG0479|consensus 96.8 0.0086 1.9E-07 57.3 9.4 142 46-198 302-487 (818)
438 cd00544 CobU Adenosylcobinamid 96.8 0.0097 2.1E-07 48.9 8.8 21 69-89 2-22 (169)
439 PF08298 AAA_PrkA: PrkA AAA do 96.8 0.002 4.2E-08 58.5 5.0 50 43-92 58-114 (358)
440 cd02027 APSK Adenosine 5'-phos 96.8 0.019 4.1E-07 46.2 10.3 23 69-91 2-24 (149)
441 cd01129 PulE-GspE PulE/GspE Th 96.8 0.0032 6.8E-08 55.9 6.1 51 41-92 56-106 (264)
442 cd04124 RabL2 RabL2 subfamily. 96.8 0.0079 1.7E-07 48.9 8.1 23 68-90 2-24 (161)
443 cd00464 SK Shikimate kinase (S 96.8 0.0018 4E-08 52.2 4.3 23 69-91 2-24 (154)
444 KOG0086|consensus 96.8 0.02 4.3E-07 45.1 9.6 95 69-178 12-125 (214)
445 COG4619 ABC-type uncharacteriz 96.7 0.0035 7.6E-08 50.6 5.6 53 69-124 32-86 (223)
446 COG1100 GTPase SAR1 and relate 96.7 0.012 2.7E-07 50.4 9.6 100 68-179 7-123 (219)
447 PRK13949 shikimate kinase; Pro 96.7 0.0016 3.5E-08 53.7 3.9 24 68-91 3-26 (169)
448 PF00437 T2SE: Type II/IV secr 96.7 0.002 4.2E-08 57.5 4.7 51 43-93 102-154 (270)
449 TIGR01360 aden_kin_iso1 adenyl 96.7 0.0017 3.7E-08 54.3 4.0 26 66-91 3-28 (188)
450 COG3910 Predicted ATPase [Gene 96.7 0.036 7.9E-07 45.7 11.3 51 40-91 12-62 (233)
451 PF08303 tRNA_lig_kinase: tRNA 96.7 0.027 5.8E-07 45.4 10.4 74 72-163 5-79 (168)
452 PRK14531 adenylate kinase; Pro 96.7 0.0018 3.9E-08 54.2 4.0 24 68-91 4-27 (183)
453 COG0563 Adk Adenylate kinase a 96.7 0.0017 3.7E-08 53.8 3.8 23 68-90 2-24 (178)
454 PLN02674 adenylate kinase 96.7 0.032 7E-07 48.6 11.8 25 67-91 32-56 (244)
455 cd03228 ABCC_MRP_Like The MRP 96.7 0.014 3.1E-07 48.0 9.3 43 138-180 115-158 (171)
456 PRK06995 flhF flagellar biosyn 96.7 0.015 3.3E-07 55.7 10.5 23 69-91 259-281 (484)
457 TIGR02760 TraI_TIGR conjugativ 96.7 0.015 3.2E-07 65.2 11.8 124 46-175 427-565 (1960)
458 TIGR02236 recomb_radA DNA repa 96.7 0.008 1.7E-07 54.8 8.3 63 56-118 83-151 (310)
459 KOG3928|consensus 96.7 0.11 2.3E-06 48.0 15.1 50 187-236 402-454 (461)
460 cd04162 Arl9_Arfrp2_like Arl9/ 96.7 0.0085 1.8E-07 49.0 7.6 21 69-89 2-22 (164)
461 COG0703 AroK Shikimate kinase 96.7 0.002 4.4E-08 52.5 3.8 26 67-92 3-28 (172)
462 TIGR00174 miaA tRNA isopenteny 96.7 0.0087 1.9E-07 53.4 8.1 24 69-92 2-25 (287)
463 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.6 0.0037 8E-08 53.3 5.6 27 66-92 38-64 (205)
464 cd00227 CPT Chloramphenicol (C 96.6 0.0022 4.7E-08 53.2 4.0 25 68-92 4-28 (175)
465 PRK14530 adenylate kinase; Pro 96.6 0.0019 4.2E-08 55.5 3.8 25 67-91 4-28 (215)
466 TIGR01313 therm_gnt_kin carboh 96.6 0.0014 3.1E-08 53.5 2.8 22 69-90 1-22 (163)
467 PRK09361 radB DNA repair and r 96.6 0.0076 1.6E-07 52.1 7.5 47 57-105 12-60 (225)
468 COG1102 Cmk Cytidylate kinase 96.6 0.0017 3.7E-08 51.9 3.0 23 69-91 3-25 (179)
469 PF13337 Lon_2: Putative ATP-d 96.6 0.04 8.6E-07 51.8 12.4 90 68-177 210-311 (457)
470 TIGR02655 circ_KaiC circadian 96.6 0.014 3E-07 56.7 9.8 37 55-91 250-288 (484)
471 PRK09270 nucleoside triphospha 96.6 0.0063 1.4E-07 52.8 6.8 41 52-92 18-59 (229)
472 TIGR01425 SRP54_euk signal rec 96.6 0.011 2.4E-07 55.7 8.8 25 69-93 103-127 (429)
473 PRK10867 signal recognition pa 96.6 0.024 5.2E-07 53.7 11.1 25 69-93 103-127 (433)
474 cd03223 ABCD_peroxisomal_ALDP 96.6 0.011 2.4E-07 48.5 7.8 40 137-178 109-149 (166)
475 PF03308 ArgK: ArgK protein; 96.6 0.0053 1.1E-07 53.3 6.0 53 54-106 16-69 (266)
476 PRK00091 miaA tRNA delta(2)-is 96.6 0.0069 1.5E-07 54.8 7.0 24 69-92 7-30 (307)
477 cd03227 ABC_Class2 ABC-type Cl 96.6 0.026 5.6E-07 46.1 9.9 24 68-91 23-46 (162)
478 cd03246 ABCC_Protease_Secretio 96.6 0.025 5.3E-07 46.8 9.8 42 137-178 114-157 (173)
479 PF06745 KaiC: KaiC; InterPro 96.5 0.0046 1E-07 53.5 5.6 33 57-89 8-42 (226)
480 cd01428 ADK Adenylate kinase ( 96.5 0.0027 5.9E-08 53.4 4.1 22 69-90 2-23 (194)
481 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 96.5 0.032 7E-07 45.4 10.4 22 68-89 4-25 (166)
482 PRK05541 adenylylsulfate kinas 96.5 0.0028 6.1E-08 52.6 4.0 26 68-93 9-34 (176)
483 PRK13833 conjugal transfer pro 96.5 0.0082 1.8E-07 54.6 7.2 54 36-91 110-169 (323)
484 PRK14721 flhF flagellar biosyn 96.5 0.014 3.1E-07 54.9 9.0 22 69-90 194-215 (420)
485 COG0572 Udk Uridine kinase [Nu 96.5 0.014 3.1E-07 49.4 8.1 25 69-93 11-35 (218)
486 PRK04301 radA DNA repair and r 96.5 0.011 2.3E-07 54.1 8.0 64 55-118 89-158 (317)
487 PF13555 AAA_29: P-loop contai 96.5 0.004 8.7E-08 41.6 3.8 26 68-93 25-50 (62)
488 TIGR02868 CydC thiol reductant 96.5 0.016 3.5E-07 56.9 9.8 24 68-91 363-386 (529)
489 PTZ00088 adenylate kinase 1; P 96.5 0.0032 7E-08 54.5 4.3 24 68-91 8-31 (229)
490 cd01130 VirB11-like_ATPase Typ 96.5 0.0053 1.1E-07 51.5 5.4 39 51-91 12-50 (186)
491 TIGR03880 KaiC_arch_3 KaiC dom 96.5 0.0081 1.8E-07 51.9 6.7 34 57-90 5-40 (224)
492 cd00876 Ras Ras family. The R 96.5 0.016 3.5E-07 46.6 8.2 21 69-89 2-22 (160)
493 PF01583 APS_kinase: Adenylyls 96.5 0.0028 6.1E-08 51.1 3.5 27 69-95 5-31 (156)
494 cd04106 Rab23_lke Rab23-like s 96.5 0.04 8.8E-07 44.5 10.6 21 69-89 3-23 (162)
495 TIGR02533 type_II_gspE general 96.5 0.005 1.1E-07 59.4 5.8 53 40-93 217-269 (486)
496 cd04110 Rab35 Rab35 subfamily. 96.5 0.013 2.8E-07 49.6 7.8 23 68-90 8-30 (199)
497 PRK08233 hypothetical protein; 96.5 0.0024 5.1E-08 53.1 3.2 23 69-91 6-28 (182)
498 PRK11176 lipid transporter ATP 96.5 0.015 3.3E-07 57.8 9.5 42 137-178 498-540 (582)
499 COG2274 SunT ABC-type bacterio 96.5 0.011 2.4E-07 59.5 8.3 42 137-178 627-669 (709)
500 cd03222 ABC_RNaseL_inhibitor T 96.5 0.019 4.1E-07 47.7 8.4 96 68-178 27-133 (177)
No 1
>KOG0991|consensus
Probab=100.00 E-value=4.7e-54 Score=352.65 Aligned_cols=321 Identities=34% Similarity=0.574 Sum_probs=298.4
Q ss_pred CCCCCCCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC
Q psy17903 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (355)
Q Consensus 25 ~~~~~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 104 (355)
.++.-..+.||+|||||..+.++||+++.++++.-..+.|+.||++|.||||+||||.+.++++++.++.++..++++|+
T Consensus 7 ~~~~~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNA 86 (333)
T KOG0991|consen 7 MSKSDKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNA 86 (333)
T ss_pred CCccccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccC
Confidence 33444567779999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred CCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccc
Q psy17903 105 SDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184 (355)
Q Consensus 105 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 184 (355)
+++++++.+++.++.|++..+... ....|+||+||+|.|+..+|++|++.||-++..++|.++||...++++++
T Consensus 87 SdeRGIDvVRn~IK~FAQ~kv~lp------~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~s~KIiEPI 160 (333)
T KOG0991|consen 87 SDERGIDVVRNKIKMFAQKKVTLP------PGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQSEKIIEPI 160 (333)
T ss_pred ccccccHHHHHHHHHHHHhhccCC------CCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcchhhhhhhH
Confidence 999999999999999998765431 12678999999999999999999999999999999999999999999999
Q ss_pred cCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCC
Q psy17903 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264 (355)
Q Consensus 185 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~ 264 (355)
.|||..++|..+++.++...+..+++.+++.++++.+++++..+.||+|+++|.||.... +-+.|+.+.|.+++....
T Consensus 161 QSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~--g~g~Vn~enVfKv~d~Ph 238 (333)
T KOG0991|consen 161 QSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVN--GFGLVNQENVFKVCDEPH 238 (333)
T ss_pred HhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhc--cccccchhhhhhccCCCC
Confidence 999999999999999999999999999999999999999999999999999999997665 558899999999999999
Q ss_pred hHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHH
Q psy17903 265 NPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQIL 341 (355)
Q Consensus 265 ~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~ 341 (355)
+..+.+++.+ ++++.+.+++..+++.|||+.+|+..+++.+... +.++..+.+.+..++-+..++.+|.+.++||.
T Consensus 239 P~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~-~~~E~~rlE~ikeig~thmrI~eGv~s~LQl~ 317 (333)
T KOG0991|consen 239 PLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNM-DVAESLRLEFIKEIGLTHMRILEGVNSLLQLS 317 (333)
T ss_pred hHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhhHHhHHHhhHhHHHHHH
Confidence 9999999987 8999999999999999999999999999988876 47788888999999999999999999999999
Q ss_pred HHHHHHHHHHhhc
Q psy17903 342 DLGSIVIKANKTA 354 (355)
Q Consensus 342 ~~~~~~~~~~~~~ 354 (355)
.+++++|+.-.++
T Consensus 318 glla~l~~~~~k~ 330 (333)
T KOG0991|consen 318 GLLAKLCKVGEKA 330 (333)
T ss_pred HHHHHHHHhcccc
Confidence 9999999765443
No 2
>KOG0989|consensus
Probab=100.00 E-value=1.7e-53 Score=363.37 Aligned_cols=319 Identities=47% Similarity=0.710 Sum_probs=298.2
Q ss_pred CCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC-CccccceeeecCCCccc
Q psy17903 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRG 109 (355)
Q Consensus 31 ~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~ 109 (355)
....|+|||||++|++++||+.++..|.+.+..+..||||||||||||||+.|+++++++++ +..+..+.+.|++++++
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderG 101 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERG 101 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccc
Confidence 55679999999999999999999999999999988999999999999999999999999998 55666788999999999
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCee
Q psy17903 110 IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189 (355)
Q Consensus 110 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 189 (355)
+..+++.++.|+..........+.++..+||+|+||+|.|+.++|++|++.||+++.+++||++||..++++.++.|||.
T Consensus 102 isvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~ 181 (346)
T KOG0989|consen 102 ISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQ 181 (346)
T ss_pred ccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHH
Confidence 99999999999998877777788888889999999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC-HHHHHHHhCCCChHHH
Q psy17903 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV-NEDVLEVTGVIPNPWI 268 (355)
Q Consensus 190 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It-~~~v~~~~~~~~~~~~ 268 (355)
.+.|+++..+++...|+.+|.++|+.+++++++.++..++||+|+|+..||.++. .++.|| .-.++++.+.++.+.+
T Consensus 182 KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~--~gk~It~~~~~e~~~GvVp~~~l 259 (346)
T KOG0989|consen 182 KFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSL--LGKRITTSLVNEELAGVVPDEKL 259 (346)
T ss_pred HhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhc--cCcccchHHHHHHHhccCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999998 567888 5555566668888888
Q ss_pred HHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy17903 269 EKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGS 345 (355)
Q Consensus 269 ~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~ 345 (355)
.++++. +|+.+....++++++.|+++.++++++..++....+.++..+..+-..++..+.++.+|.+.+++|-.++.
T Consensus 260 ~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~g~~d~~k~~~~~kl~~~~~~~~dg~~l~~~L~~L~~ 339 (346)
T KOG0989|consen 260 LDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDIIGLSDEQKAQISLKLFTRDKRLEDGEDLELALKDLLE 339 (346)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhccccchHHHHHHHHHHHhccchhhcchhHHHHHHHHHH
Confidence 888887 99999999999999999999999999999999887889999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy17903 346 IVIKAN 351 (355)
Q Consensus 346 ~~~~~~ 351 (355)
.+.+.+
T Consensus 340 ~~~ql~ 345 (346)
T KOG0989|consen 340 AEKQLR 345 (346)
T ss_pred HHHHHh
Confidence 887654
No 3
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=4.7e-50 Score=365.27 Aligned_cols=313 Identities=38% Similarity=0.585 Sum_probs=285.7
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHH
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQV 112 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (355)
.||++||||++|++++||++++..|+.++.+++.+|++|+||||+|||++|+++++++.+..+...++++|+++..+++.
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~ 80 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDV 80 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHH
Confidence 48999999999999999999999999999999999999999999999999999999998776666789999999889999
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeeeEE
Q psy17903 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192 (355)
Q Consensus 113 i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~ 192 (355)
+++.+..++....... .+.++++||||+|.|+.++|++|++++|.++.+++||++||...++.++|+|||..++
T Consensus 81 vr~~i~~~~~~~~~~~------~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~ 154 (319)
T PLN03025 81 VRNKIKMFAQKKVTLP------PGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVR 154 (319)
T ss_pred HHHHHHHHHhccccCC------CCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhccc
Confidence 9988887765432110 0156899999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHHHH
Q psy17903 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLL 272 (355)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~ 272 (355)
|++++.+++..+++.+++++|+.++++++++++..++||+|.+++.||.... +.+.||.+++.++++...++.+++++
T Consensus 155 f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~--~~~~i~~~~v~~~~~~~~~~~i~~~i 232 (319)
T PLN03025 155 FSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHS--GFGFVNQENVFKVCDQPHPLHVKNIV 232 (319)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh--cCCCCCHHHHHHHcCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999995443 45689999999999999999999999
Q ss_pred hc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 273 KV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 273 ~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
++ ++.+.+...+++|+..|+++.+|+..+.+++... ++++..+..++..++++++++..|.++.+||+.|+..++.
T Consensus 233 ~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~~ 311 (319)
T PLN03025 233 RNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNY-DMPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLCL 311 (319)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 87 8999999999999999999999999998887654 6789999999999999999999999999999999999988
Q ss_pred HHhhc
Q psy17903 350 ANKTA 354 (355)
Q Consensus 350 ~~~~~ 354 (355)
....|
T Consensus 312 ~~~~~ 316 (319)
T PLN03025 312 VRETA 316 (319)
T ss_pred HHHHh
Confidence 76554
No 4
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=1.7e-44 Score=330.45 Aligned_cols=311 Identities=41% Similarity=0.692 Sum_probs=280.3
Q ss_pred CCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 109 (355)
.+..+|.+||||++|++++|++++++.+..+++.+..++++|+||+|+|||++++.+++.+.+..+...++++++++..+
T Consensus 2 ~~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~ 81 (319)
T PRK00440 2 MMEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG 81 (319)
T ss_pred CccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc
Confidence 45789999999999999999999999999999999888999999999999999999999998777777788888877666
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCee
Q psy17903 110 IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCS 189 (355)
Q Consensus 110 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~ 189 (355)
.+.+++.+..+........ +++++|+|||+|.+..+.++.|+++++.++.++++|++++...++.+++++||.
T Consensus 82 ~~~~~~~i~~~~~~~~~~~-------~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~ 154 (319)
T PRK00440 82 IDVIRNKIKEFARTAPVGG-------APFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCA 154 (319)
T ss_pred hHHHHHHHHHHHhcCCCCC-------CCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhh
Confidence 6666666666654332210 146799999999999999999999999999999999999999999999999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHH
Q psy17903 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIE 269 (355)
Q Consensus 190 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~ 269 (355)
.++|.+++.+++..+++.++.++|+.+++++++.+++.++||+|.+++.|++++.+ ++.||.++|.+++....+..++
T Consensus 155 ~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~--~~~it~~~v~~~~~~~~~~~i~ 232 (319)
T PRK00440 155 VFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT--GKEVTEEAVYKITGTARPEEIR 232 (319)
T ss_pred eeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHhCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999998875 4689999999999999999999
Q ss_pred HHHhc---CCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Q psy17903 270 KLLKV---DSFQVLEKYIEDLI-LEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGS 345 (355)
Q Consensus 270 ~l~~~---~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~ 345 (355)
+++++ ++..+++.++++|+ ..|+++.+++..+..++.. ++++...+.++++.++++|+++|+|.++.++||.|++
T Consensus 233 ~l~~~~~~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~~-~~~~~~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i~ 311 (319)
T PRK00440 233 EMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQIHREVWS-LDIPEELKVELIDAIGEADFRITEGANERIQLEALLA 311 (319)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99987 89999999999997 4899999999999876654 5899999999999999999999999999999999999
Q ss_pred HHHHH
Q psy17903 346 IVIKA 350 (355)
Q Consensus 346 ~~~~~ 350 (355)
++|..
T Consensus 312 ~~~~~ 316 (319)
T PRK00440 312 KLALL 316 (319)
T ss_pred HHHHh
Confidence 99865
No 5
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.3e-45 Score=343.31 Aligned_cols=307 Identities=27% Similarity=0.397 Sum_probs=276.9
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc-----------------
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM----------------- 94 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~----------------- 94 (355)
..|.+||||++|++++||++++..|...++.++.+| ||||||+|+|||++|+++++.+.+..
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 469999999999999999999999999999999999 89999999999999999999997532
Q ss_pred --cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEE
Q psy17903 95 --YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (355)
Q Consensus 95 --~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il 172 (355)
.+..++++++....+++.+++.+......+.. +++||+||||+|.|+.+++++|+++||+++.+++||+
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~---------~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL 152 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSM---------ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFIL 152 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCccc---------CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEE
Confidence 34467888887777899999888764433222 2678999999999999999999999999999999999
Q ss_pred EecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy17903 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (355)
Q Consensus 173 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It 252 (355)
+|+++.++.++|+|||..++|.+++.+++..|+..++.++|+.++++++..+++.++||+|.+++.|+++..++ ++.||
T Consensus 153 ~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~-~~~It 231 (535)
T PRK08451 153 ATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYC-KNAIT 231 (535)
T ss_pred EECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhc-CCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988876 56899
Q ss_pred HHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----cCCCCHHHHHHHHHHHH
Q psy17903 253 NEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS-----ASSLSDKQKALILEKLA 324 (355)
Q Consensus 253 ~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-----~~~~~~~~~~~i~~~l~ 324 (355)
.++|.++++...++.+++++++ ++...+..++.++ .|+++.+++..+..+++. ...++...+.+.+..++
T Consensus 232 ~~~V~~~lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~~~~~~l~~l~r~~riL~ 309 (535)
T PRK08451 232 ESKVADMLGLLDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSKDSEFSILLYERFFRILS 309 (535)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHH
Confidence 9999999999999999999987 8999999999998 479999999999888872 23467777889999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHHH
Q psy17903 325 ECNARLQDGASEYIQILDLGSIVIKAN 351 (355)
Q Consensus 325 ~~~~~l~~g~~~~~~l~~~~~~~~~~~ 351 (355)
++...++.|.+++++++.++.+++...
T Consensus 310 ~~k~~l~~g~~~~i~l~~~~~~~~~~~ 336 (535)
T PRK08451 310 SAKSLLKEGADDGFVLLLMLFKMKEAL 336 (535)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence 999999999999999999999998743
No 6
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-44 Score=346.83 Aligned_cols=307 Identities=21% Similarity=0.298 Sum_probs=273.0
Q ss_pred ccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc------------------
Q psy17903 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM------------------ 94 (355)
Q Consensus 34 ~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~------------------ 94 (355)
.|.+||||++|++++||+++++.|++++..++.+| |||+||+|+|||++|+.+++.+++..
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 46799999999999999999999999999999999 89999999999999999999998631
Q ss_pred ---cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 95 ---YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 95 ---~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
...++++++++...+++.+++.+......+..+ ++||+||||+|.|+.+++++|+++||+++.+++||
T Consensus 82 ~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~---------~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fI 152 (584)
T PRK14952 82 NGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQS---------RYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFI 152 (584)
T ss_pred ccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcC---------CceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEE
Confidence 134678899887788999988776654443322 67899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++|++++++.++|+|||..++|.+++.+++.+|+..+++++|+.++++++..+++.++||+|.++++|++++.+.+++.|
T Consensus 153 L~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~I 232 (584)
T PRK14952 153 FATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHV 232 (584)
T ss_pred EEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988767789
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
|.+++.++++......+++++++ ++...+..++++++..|.++..++..|.++++.
T Consensus 233 t~~~v~~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~ 312 (584)
T PRK14952 233 TYQRALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPED 312 (584)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCHH
Confidence 99999999999999999999888 899999999999999999999888887776652
Q ss_pred --------cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 --------ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 --------~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+.++++.+......++.+.+.++.||.++.++|.
T Consensus 313 ~~~~l~~qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~ 362 (584)
T PRK14952 313 VLERMREQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLL 362 (584)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc
Confidence 123666777888886666666666668999999999999984
No 7
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2e-44 Score=339.61 Aligned_cols=311 Identities=23% Similarity=0.322 Sum_probs=277.9
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc----------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM---------------- 94 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~---------------- 94 (355)
-..|++||||.+|++++||+.++..|.++++.++.+| +|||||+|+|||++|+.+++.+.+..
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~ 83 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKE 83 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHH
Confidence 4579999999999999999999999999999999988 99999999999999999999997631
Q ss_pred ----cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccE
Q psy17903 95 ----YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRF 170 (355)
Q Consensus 95 ----~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~ 170 (355)
...+++++++....+++.+++........+.. +++++|||||+|.|+.+.++.|+++||+++.+++|
T Consensus 84 i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~---------~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~ 154 (451)
T PRK06305 84 ISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSK---------SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKF 154 (451)
T ss_pred HhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhc---------CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceE
Confidence 12357778776667788887765544433221 26789999999999999999999999999999999
Q ss_pred EEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCC
Q psy17903 171 CLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250 (355)
Q Consensus 171 Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~ 250 (355)
|++++...++.++|++||..++|.+++.+++..|+..+++++|+.+++++++.|+..++||+|.++++++++..+.+ +.
T Consensus 155 Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~-~~ 233 (451)
T PRK06305 155 FLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFP-KS 233 (451)
T ss_pred EEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987754 56
Q ss_pred CCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------cCCCCHH
Q psy17903 251 IVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS-------------ASSLSDK 314 (355)
Q Consensus 251 It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-------------~~~~~~~ 314 (355)
|+.++|.++++....+.+++++++ ++...+..++++++..|.++..++..+.++++. .+.++..
T Consensus 234 It~~~V~~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~~~~~~~a~~~s~~ 313 (451)
T PRK06305 234 LDPDSVAKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYNKQLSSVATKYSSE 313 (451)
T ss_pred cCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhCCHH
Confidence 999999999999999999999988 899999999999999999999998887766553 2578999
Q ss_pred HHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHh
Q psy17903 315 QKALILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352 (355)
Q Consensus 315 ~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~~~~ 352 (355)
.+.++++.+.++|+.+++|.++.+.||.|+.+++..+.
T Consensus 314 ~L~~ii~~l~e~d~~lk~~~~~k~~lE~lll~l~~~~~ 351 (451)
T PRK06305 314 QLLEIIDFLGESAKHIQLTIFEKTFLETVIIHLIRIYQ 351 (451)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999987654
No 8
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=4.2e-44 Score=345.23 Aligned_cols=310 Identities=19% Similarity=0.288 Sum_probs=279.3
Q ss_pred CCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc-------------
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY------------- 95 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~------------- 95 (355)
..-.+|.+||||++|++++||+.+++.|.+++..++.+| +||+||+|+|||++|+.+++.+++...
T Consensus 9 ~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 9 TPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred ccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 345779999999999999999999999999999999998 999999999999999999999986421
Q ss_pred -----------ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc
Q psy17903 96 -----------RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164 (355)
Q Consensus 96 -----------~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 164 (355)
+.+++++++....+++.+++.+......+... ++|||||||+|.|+..+++.|+++||++
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a---------~~KVvIIDEad~Ls~~a~naLLKtLEeP 159 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSA---------RYKVYIIDEVHMLSTAAFNALLKTLEEP 159 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcC---------CcEEEEEEChHhCCHHHHHHHHHHHHhC
Confidence 13467788777788999998887665444332 6789999999999999999999999999
Q ss_pred cCCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 165 TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 165 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
+.+++|||+++..+++.++|+|||..++|.+++.+++..|+.++++++|+.+++++++.|++.++|++|.++++|+++..
T Consensus 160 p~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~ 239 (598)
T PRK09111 160 PPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIA 239 (598)
T ss_pred CCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhCCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------------
Q psy17903 245 LKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS-------------- 307 (355)
Q Consensus 245 ~~~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-------------- 307 (355)
+. .+.||.++|.++++......+++++++ ++...+...+++++..|.++..++..|.++++.
T Consensus 240 ~g-~g~It~e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~ 318 (598)
T PRK09111 240 HG-AGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDP 318 (598)
T ss_pred hc-CCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcc
Confidence 74 568999999999999999999999997 999999999999999999999999887765552
Q ss_pred -------------cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 -------------ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 -------------~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
.+.++...+.++++.|.+.++.++++.|..+.+|.++.+++.
T Consensus 319 ~~~p~~~~kl~~~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~ 373 (598)
T PRK09111 319 SLSEAERTRGAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAY 373 (598)
T ss_pred cCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHh
Confidence 235677889999999999999999999999999999999974
No 9
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4e-44 Score=347.80 Aligned_cols=308 Identities=20% Similarity=0.358 Sum_probs=279.4
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc-----------------
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM----------------- 94 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~----------------- 94 (355)
..|++||||.+|++++||++++..|.++++.++.+| ||||||+|+|||++|+.+++.+.+..
T Consensus 5 ~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 5 IVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 579999999999999999999999999999999999 99999999999999999999997421
Q ss_pred ---cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 95 ---YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 95 ---~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
...+++++++.+..+++.+++.+......+..+ ++||+||||+|.|+.++++.|+++||+++.+++||
T Consensus 85 ~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~---------~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifI 155 (614)
T PRK14971 85 NEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIG---------KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFI 155 (614)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhCcccC---------CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEE
Confidence 235778888877777888998887765544332 67899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++++...++.++|+|||..++|.+++.+++..|+..++.++|+.+++++++.|+..++||+|.++++|++++.|.+++ |
T Consensus 156 L~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~-I 234 (614)
T PRK14971 156 LATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGN-I 234 (614)
T ss_pred EEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCC-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999887555 9
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
+.+++.+.+.....+.+|+++++ ++...+...+++|+..|+++..++..|.++++.
T Consensus 235 t~~~V~~~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~~~~ 314 (614)
T PRK14971 235 TYKSVIENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQ 314 (614)
T ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHHHHH
Confidence 99999999999999999999998 899999999999999999999999887765542
Q ss_pred -----cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q psy17903 308 -----ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350 (355)
Q Consensus 308 -----~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~~ 350 (355)
+++++...+.++++.+.++|+.||+|.|.++.||.++.+++..
T Consensus 315 ~~~~qa~~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~ 362 (614)
T PRK14971 315 RYLEQAQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQL 362 (614)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 2467788889999999999999999999999999999999864
No 10
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.7e-44 Score=331.06 Aligned_cols=310 Identities=20% Similarity=0.318 Sum_probs=265.0
Q ss_pred CCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc--------------
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM-------------- 94 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~-------------- 94 (355)
.+..+|.+||||++|++++||++++..|..++..++.+| +||+||+|+|||++|+.+++.+++..
T Consensus 3 ~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 345789999999999999999999999999999999998 99999999999999999999998742
Q ss_pred -----cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCcc
Q psy17903 95 -----YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTR 169 (355)
Q Consensus 95 -----~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 169 (355)
...+++++++....+++.+++.+......+.. +.++|+||||+|.|+.+++++|++.||+++.+++
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~---------g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~vi 153 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMG---------GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIV 153 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhc---------CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceE
Confidence 12357788887778888888876665433221 1568999999999999999999999999999999
Q ss_pred EEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCC
Q psy17903 170 FCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249 (355)
Q Consensus 170 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~ 249 (355)
||++|+...++.++|+|||..++|.+++.+++..++++++..+|+.++++++..|++.++|++|.+++.|+.+..+. ++
T Consensus 154 FILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~-~~ 232 (484)
T PRK14956 154 FILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFT-DS 232 (484)
T ss_pred EEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877654 45
Q ss_pred CCCHHHHHHHhCCCChHHHHHHHhc---CC-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------------
Q psy17903 250 GIVNEDVLEVTGVIPNPWIEKLLKV---DS-FQVLEKYIEDLILEAYSATQLFDQFHDIVMS------------------ 307 (355)
Q Consensus 250 ~It~~~v~~~~~~~~~~~~~~l~~~---~~-~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~------------------ 307 (355)
.||.+.|.++++....+.+.+++++ ++ ...+...+..++..|.++..++..+.++++.
T Consensus 233 ~it~~~V~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~ 312 (484)
T PRK14956 233 KLTGVKIRKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPK 312 (484)
T ss_pred CcCHHHHHHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCH
Confidence 7999999999999999999999887 34 4689999999999999999999888877663
Q ss_pred ---------cCCCCHHHHHHHHHHHHH----H-HHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 ---------ASSLSDKQKALILEKLAE----C-NARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 ---------~~~~~~~~~~~i~~~l~~----~-~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+.++++.+.. . +..++...+.++.+|..+.+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~ 368 (484)
T PRK14956 313 EDLQKMKSDFENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVE 368 (484)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhc
Confidence 123444445554444422 2 34567778999999999999984
No 11
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7e-44 Score=341.44 Aligned_cols=308 Identities=21% Similarity=0.322 Sum_probs=271.1
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc---------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~--------------- 95 (355)
...|.+||||++|++++||+++++.|.+++.+++.+| |||+||+|+|||++++.+++.++++..
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 4569999999999999999999999999999999999 899999999999999999999986311
Q ss_pred ----ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 96 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
..+++++|..+..+++++++.+......+.. .++||+||||+|.|+...+|.|+++||+++.+++||
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~---------gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FI 153 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVD---------ARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFI 153 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhcccc---------CCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEE
Confidence 1257889988888899999888765433322 267899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
|+|++..++.++|+|||..++|++++.+++..+|++++..+++.++++++..|++.++||+|.++++++.+..+. ++.|
T Consensus 154 LaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~-~~~I 232 (830)
T PRK07003 154 LATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYS-ANEV 232 (830)
T ss_pred EEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998877664 4579
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
+.+.|..+++....+.++++++. ++...+...+.++...|++...++..|..++.+
T Consensus 233 t~~~V~~~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~ 312 (830)
T PRK07003 233 TETAVSGMLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADL 312 (830)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHH
Confidence 99999999999999999999988 999999999999999898877666555443331
Q ss_pred ---cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 ---ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 ---~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+...++.+......|+...+.++.+|+.+.+++.
T Consensus 313 ~~~a~~~s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~ 357 (830)
T PRK07003 313 RRFAELLSPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLA 357 (830)
T ss_pred HHHHHhCCHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhc
Confidence 235677777888899999999998889999999999999863
No 12
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.7e-44 Score=354.41 Aligned_cols=309 Identities=21% Similarity=0.321 Sum_probs=272.9
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc----------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM---------------- 94 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~---------------- 94 (355)
...|.+||||.+|++|+||+++++.|++++.+++.+| |||+||+|||||++|+.|++.++|..
T Consensus 2 ~~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~ 81 (824)
T PRK07764 2 ALALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVAL 81 (824)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHH
Confidence 4568899999999999999999999999999999999 99999999999999999999998631
Q ss_pred -----cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCcc
Q psy17903 95 -----YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTR 169 (355)
Q Consensus 95 -----~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 169 (355)
...+++++++....+++.+++........... +++||+||||+|.|+.+.+|.|+++||+++.+++
T Consensus 82 ~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~---------~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~ 152 (824)
T PRK07764 82 APGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAE---------SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLK 152 (824)
T ss_pred HcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhc---------CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeE
Confidence 23467888887778899998866554332221 2678999999999999999999999999999999
Q ss_pred EEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCC
Q psy17903 170 FCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249 (355)
Q Consensus 170 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~ 249 (355)
|||+|++.++++++|+|||..|.|.+++.+++..||.++++++|+.++++++..|++.++||+|.++++|+++..+.+.+
T Consensus 153 fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~ 232 (824)
T PRK07764 153 FIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPE 232 (824)
T ss_pred EEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876677
Q ss_pred CCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------------
Q psy17903 250 GIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS------------------- 307 (355)
Q Consensus 250 ~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~------------------- 307 (355)
.||.+++..+++......+++++++ ++...+..++++++..|+++..++..|.++++.
T Consensus 233 ~IT~e~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p 312 (824)
T PRK07764 233 GVTYERAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAP 312 (824)
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCC
Confidence 8999999999999999999999987 789999999999999999987776665554442
Q ss_pred ----------cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 ----------ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 ----------~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...|+...+.++++.+.++...++.+.+.++.+|.||.+++.
T Consensus 313 ~d~~~~L~~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll 364 (824)
T PRK07764 313 ADQLDRMRAQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLL 364 (824)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Confidence 135667778888999999977787779999999999999974
No 13
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.3e-44 Score=339.77 Aligned_cols=308 Identities=19% Similarity=0.265 Sum_probs=271.1
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc----------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM---------------- 94 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~---------------- 94 (355)
-.+|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.+++..
T Consensus 3 y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred chhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 4679999999999999999999999999999999999 89999999999999999999998632
Q ss_pred ---cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 95 ---YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 95 ---~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
...++++++++...+++.+++.+......+.. +.+||+||||+|.|+.+++++|+++||+++.+++||
T Consensus 83 ~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~---------~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 83 DEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTK---------GRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred hcCCCceEEEEcccccCCHHHHHHHHHHHhhcccc---------CCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 12357889988888999999887765543322 267899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++|+++.++.++|+|||..++|.+++.+++..+++.+++++|+.++++++..+++.++|++|.++++++++..+ +++.|
T Consensus 154 lattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~-~~~~I 232 (509)
T PRK14958 154 LATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAY-GNGKV 232 (509)
T ss_pred EEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhc-CCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877 46789
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
|.++|.++++....+.+++++++ ++.+.+...++++...|.++..++..+..++.+
T Consensus 233 t~~~V~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (509)
T PRK14958 233 LIADVKTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQLRQ 312 (509)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccccchHHHHHH
Confidence 99999999999999999999997 899999999999999999988777666554442
Q ss_pred -cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 -ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 -~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+...++.+......|+...+.++.+|..+.+++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 355 (509)
T PRK14958 313 LAKLLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLA 355 (509)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Confidence 123455555556666666778888889999999999999874
No 14
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.8e-43 Score=334.18 Aligned_cols=312 Identities=20% Similarity=0.312 Sum_probs=277.8
Q ss_pred CCCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc-------------
Q psy17903 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM------------- 94 (355)
Q Consensus 29 ~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~------------- 94 (355)
+++..+|.+||||++|++++||++++..|...+..++.+| +||+||+|+|||++|+.+++.+++..
T Consensus 5 ~~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 5 SNQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred cccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 3567899999999999999999999999999999999887 99999999999999999999997632
Q ss_pred ----------cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc
Q psy17903 95 ----------YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164 (355)
Q Consensus 95 ----------~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 164 (355)
...+++++++....+++.+++.+......+..+ +++|+||||+|.|+..+++.|+++||++
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~---------~~KVvIIDEa~~Ls~~a~naLLk~LEep 155 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQG---------KHKIFIIDEVHMLSKGAFNALLKTLEEP 155 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccC---------CcEEEEEEChhhcCHHHHHHHHHHHhhc
Confidence 123678888888889999999887765444332 6789999999999999999999999999
Q ss_pred cCCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 165 TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 165 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
+.+++||++|+..+++.+++++||..++|.+++.+++..|++.+++++|+.+++++++.|++.++||+|.++++|++++.
T Consensus 156 p~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~ 235 (507)
T PRK06645 156 PPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAAS 235 (507)
T ss_pred CCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhC--CCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------
Q psy17903 245 LKG--GEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS------------ 307 (355)
Q Consensus 245 ~~~--~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~------------ 307 (355)
+++ ++.||.++|.++++....+.+++++++ ++...+...+++++..|.++..++..+.++++.
T Consensus 236 ~~~~~~~~It~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~ 315 (507)
T PRK06645 236 MSAKSDNIISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSL 315 (507)
T ss_pred hhccCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 764 347999999999999999999999998 999999999999999999999888765554431
Q ss_pred -------------cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 -------------ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 -------------~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+.++.+.+.+....++...+.++.+|..+.+++.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~ 370 (507)
T PRK06645 316 PIYESFNDRTKSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIY 370 (507)
T ss_pred ccchhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHH
Confidence 124556677788899999999999999999999999999874
No 15
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.9e-44 Score=345.97 Aligned_cols=308 Identities=22% Similarity=0.347 Sum_probs=277.4
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc---------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~--------------- 95 (355)
...|.+||||++|++++||+++++.|.+++..++.+| ||||||+|+|||++|+.+++.+++...
T Consensus 3 y~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 3 YLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 3568999999999999999999999999999999999 899999999999999999999986421
Q ss_pred ----ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 96 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
..+++++++....+++.+++.+......+.. +++||+||||+|.|+.+++++|+++||+++.+++||
T Consensus 83 ~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~---------~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fI 153 (576)
T PRK14965 83 TEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSR---------SRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFI 153 (576)
T ss_pred hcCCCCCeeeeeccCccCHHHHHHHHHHHHhcccc---------CCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEE
Confidence 3457888888778889988877665543322 267899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++|++++++.++|+|||..++|.+++.+++..++..+++++|+.++++++..+++.++||+|.++++|+++..+.+ +.|
T Consensus 154 l~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g-~~I 232 (576)
T PRK14965 154 FATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCG-DAV 232 (576)
T ss_pred EEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998865 479
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
|.++|.++++....+.+++++++ ++...+..++.++...|.++..++..+.++++.
T Consensus 233 t~edV~~llG~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~~ 312 (576)
T PRK14965 233 GDDDVAELLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAEL 312 (576)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHH
Confidence 99999999999999999999887 899999999999999999998888877666552
Q ss_pred ------cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 ------ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 ------~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+.++++.+.++++.++.+.+.++.||.++.+++.
T Consensus 313 ~~~~~~A~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~ 360 (576)
T PRK14965 313 AELRAQAAAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMAT 360 (576)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence 134677888889999999999999999999999999999976
No 16
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.1e-44 Score=332.95 Aligned_cols=308 Identities=20% Similarity=0.299 Sum_probs=276.4
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc-----------------
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM----------------- 94 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~----------------- 94 (355)
..+++||||.+|++++||+.+++.|.+++.+++.+| +||+||+|+|||++|+++++.+.+..
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 467899999999999999999999999999999999 99999999999999999999998732
Q ss_pred ----------cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc
Q psy17903 95 ----------YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164 (355)
Q Consensus 95 ----------~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 164 (355)
...+++++++....+++.+++....+...+..+ +++++||||+|.++.+.++.|++++|++
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~---------~~kvvIIdea~~l~~~~~~~LLk~LEep 154 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKG---------RYRVYIIDEVHMLSIAAFNAFLKTLEEP 154 (397)
T ss_pred CHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcC---------CeEEEEEeChhhCCHHHHHHHHHHHhcC
Confidence 013566777766677888888776665444332 6789999999999999999999999999
Q ss_pred cCCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 165 TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 165 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
+..++||++++...++.+++++||..++|.+++.+++..|+..+++.+++.+++++++.++..++||+|.+.++++++..
T Consensus 155 ~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~ 234 (397)
T PRK14955 155 PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIA 234 (397)
T ss_pred CCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hh----CCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------
Q psy17903 245 LK----GGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS---------- 307 (355)
Q Consensus 245 ~~----~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~---------- 307 (355)
+. +++.||.++|.+++.....+.+++++++ ++...+..+++++...|.++..++..+.++++.
T Consensus 235 ~~~~~~~~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~~~ 314 (397)
T PRK14955 235 FSVESEGEGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRST 314 (397)
T ss_pred hccccCCCCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 85 2468999999999999999999999998 999999999999999999999888877766552
Q ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 ----------------ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 ----------------~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
.++++...+.++++.+.++|+.+|++.|..+.||.|+.+++.
T Consensus 315 ~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~ 372 (397)
T PRK14955 315 RLVERPDAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIE 372 (397)
T ss_pred ccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 246888899999999999999999999999999999999864
No 17
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.1e-43 Score=331.12 Aligned_cols=304 Identities=20% Similarity=0.305 Sum_probs=272.5
Q ss_pred ccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCC-------------------
Q psy17903 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGD------------------- 93 (355)
Q Consensus 34 ~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~------------------- 93 (355)
.|++||||++|++++||+++++.|.+.+..++.+| +||+||+|+|||++|+.+++.+++.
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 58999999999999999999999999999999997 9999999999999999999998752
Q ss_pred ccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEE
Q psy17903 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173 (355)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~ 173 (355)
....+++++|+++..+++.+++.+......+..+ ++|++||||+|.|+.+++++|+++||+++.+++||++
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~---------~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPISS---------KFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhccccC---------CceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 1345789999998899999999887766554332 6789999999999999999999999999999999999
Q ss_pred ecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCH
Q psy17903 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253 (355)
Q Consensus 174 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~ 253 (355)
|+...++.++++|||..++|.+++.+++..|+..+++++|+.+++++++.|++.++||+|.++++|+++..+.+ +.||.
T Consensus 153 tte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~-~~It~ 231 (491)
T PRK14964 153 TTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSN-NKISE 231 (491)
T ss_pred eCChHHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcC-CCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988764 58999
Q ss_pred HHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-----------------------
Q psy17903 254 EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS----------------------- 307 (355)
Q Consensus 254 ~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~----------------------- 307 (355)
++|.++++....+.+++++++ ++...+...+++++..| ++..++..+..++..
T Consensus 232 e~V~~llg~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T PRK14964 232 KSVRDLLGCVDKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIK 310 (491)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHH
Confidence 999999999999999999998 99999999999999865 677777766654432
Q ss_pred --cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 --ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 --~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
.. ++...+.++++.+.+....++...+.++++|.++.+++.
T Consensus 311 ~~~~-~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~ 353 (491)
T PRK14964 311 SLKI-GSTIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCY 353 (491)
T ss_pred HHhC-CCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHh
Confidence 11 566677788899999999999999999999999999874
No 18
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.8e-43 Score=341.16 Aligned_cols=310 Identities=19% Similarity=0.291 Sum_probs=279.4
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc-----------------
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM----------------- 94 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~----------------- 94 (355)
..+.+||||.+|++++||+.++..|++++.+++.+| +||+||+|+|||++|+.+++.+++..
T Consensus 4 ~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~ 83 (620)
T PRK14954 4 QVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE 83 (620)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc
Confidence 457899999999999999999999999999999999 99999999999999999999998732
Q ss_pred ----------cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc
Q psy17903 95 ----------YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE 164 (355)
Q Consensus 95 ----------~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 164 (355)
.+.++.++++....+++.+++.+..+...+..+ ++||+||||+|.|+..+++.|+++||++
T Consensus 84 C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~---------~~KVvIIdEad~Lt~~a~naLLK~LEeP 154 (620)
T PRK14954 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKG---------RYRVYIIDEVHMLSTAAFNAFLKTLEEP 154 (620)
T ss_pred CHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcC---------CCEEEEEeChhhcCHHHHHHHHHHHhCC
Confidence 123566777766677889998877765544332 6789999999999999999999999999
Q ss_pred cCCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 165 TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 165 ~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
+.+++||+++++..++.++|++||..++|.+++.+++..|+..+++.+|+.+++++++.|+..++||+|.++++|+++..
T Consensus 155 p~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~ 234 (620)
T PRK14954 155 PPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIA 234 (620)
T ss_pred CCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hh----CCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------
Q psy17903 245 LK----GGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS---------- 307 (355)
Q Consensus 245 ~~----~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~---------- 307 (355)
|. .++.||.++|.+++.....+.+++++++ ++..++..+++++...|.++..++..+.++++.
T Consensus 235 y~~~~~~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~~ 314 (620)
T PRK14954 235 FSVGSEAEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRST 314 (620)
T ss_pred hccccccCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 86 2568999999999999999999999998 899999999999999999999999888776652
Q ss_pred ----------------cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHH
Q psy17903 308 ----------------ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351 (355)
Q Consensus 308 ----------------~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~~~ 351 (355)
++.++...+.++++.+.++|+.||++.+.++.||.|+.++++..
T Consensus 315 ~l~~~~~~v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~ 374 (620)
T PRK14954 315 RLIERPESVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELV 374 (620)
T ss_pred ccccCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcc
Confidence 24577788888999999999999999999999999999998754
No 19
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.5e-43 Score=323.48 Aligned_cols=308 Identities=20% Similarity=0.280 Sum_probs=271.4
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc---------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~--------------- 95 (355)
-.+|.+||||++|++++||+++++.|.+.+..++.+| ++|+||+|+|||++|+++++.+.+...
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~ 82 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEI 82 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 4679999999999999999999999999999999999 899999999999999999999975311
Q ss_pred ----ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 96 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
..+++++++.....++.+++.+......+.. ++++++||||+|.++..+++.|++++|+++.+++||
T Consensus 83 ~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~---------~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fI 153 (363)
T PRK14961 83 EKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSK---------SRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFI 153 (363)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhcCccc---------CCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 1245667766556677777766654432221 256799999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++|++..++.++++|||..++|.+++.+++.+|+..+++.+|+.+++++++.++..++||+|.+++.+++++.+ +.+.|
T Consensus 154 l~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~-~~~~I 232 (363)
T PRK14961 154 LATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINL-GKGNI 232 (363)
T ss_pred EEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887 46789
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
|.++|.++++...+..+++++++ ++...+...++++...|+++.+++..+..+++.
T Consensus 233 t~~~v~~~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~~ 312 (363)
T PRK14961 233 NIKNVTDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKN 312 (363)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHHH
Confidence 99999999999999999999998 899999999999999999999999887766662
Q ss_pred -----cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 -----ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 -----~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+.++++.+.+...+|+.+.+.++.+|.++.+++.
T Consensus 313 ~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~ 359 (363)
T PRK14961 313 QIQKIAQNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAIN 359 (363)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHh
Confidence 123566777778999999999999999999999999999864
No 20
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=1e-42 Score=321.21 Aligned_cols=304 Identities=32% Similarity=0.515 Sum_probs=262.7
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc---
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR--- 108 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--- 108 (355)
..+|.+||||++|++++|++++++.|.+++..+..+|++|+||+|+|||++|+++++.+.+..+...++++++.+..
T Consensus 2 ~~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~ 81 (337)
T PRK12402 2 APLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG 81 (337)
T ss_pred CCchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc
Confidence 45899999999999999999999999999999988899999999999999999999999776544556777765421
Q ss_pred -----------------------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc
Q psy17903 109 -----------------------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET 165 (355)
Q Consensus 109 -----------------------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~ 165 (355)
..+.+++.+..+....... +++++|||||+|.++.+.++.|++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~vlilDe~~~l~~~~~~~L~~~le~~~ 153 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLS--------ADYKTILLDNAEALREDAQQALRRIMEQYS 153 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCC--------CCCcEEEEeCcccCCHHHHHHHHHHHHhcc
Confidence 0122222222222211110 145699999999999999999999999988
Q ss_pred CCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q psy17903 166 KSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245 (355)
Q Consensus 166 ~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 245 (355)
..++||++++.+.++.+++++||..+.|.+++.+++..+++.++.++++.+++++++.++..++||+|.+++.+++++.
T Consensus 154 ~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~- 232 (337)
T PRK12402 154 RTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAAL- 232 (337)
T ss_pred CCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 8899999998888889999999999999999999999999999999999999999999999999999999999998773
Q ss_pred hCCCCCCHHHHHHHhCC-CChHHHHHHHhc---CCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy17903 246 KGGEGIVNEDVLEVTGV-IPNPWIEKLLKV---DSFQVLEKYIEDLI-LEAYSATQLFDQFHDIVMSASSLSDKQKALIL 320 (355)
Q Consensus 246 ~~~~~It~~~v~~~~~~-~~~~~~~~l~~~---~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~ 320 (355)
+++.||.+++.+++.. ..++.+++++++ ++..++...+++++ ..|+++..++..+..++.. .++...+.+++
T Consensus 233 -~~~~It~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~--~~~~~~l~~~~ 309 (337)
T PRK12402 233 -AAGEITMEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVARS--RYRGDNLARLH 309 (337)
T ss_pred -cCCCCCHHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--HCCHHHHHHHH
Confidence 4468999999999987 457899999988 89999999999987 7899999999999887665 49999999999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHH
Q psy17903 321 EKLAECNARLQDGASEYIQILDLGSIV 347 (355)
Q Consensus 321 ~~l~~~~~~l~~g~~~~~~l~~~~~~~ 347 (355)
+.++++|+.+|+|.+++++||.||.++
T Consensus 310 ~~l~~~d~~lk~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 310 RLAADADARLTDGANDRIQLEALLAEL 336 (337)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 999999999999999999999999876
No 21
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.5e-43 Score=336.75 Aligned_cols=308 Identities=23% Similarity=0.374 Sum_probs=278.3
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc----------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM---------------- 94 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~---------------- 94 (355)
-..|.+||||++|++++||+++++.|++++..++.+| |||+||+|+|||++|+.+++.+++..
T Consensus 3 y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 3 YQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred cHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 3568899999999999999999999999999999999 99999999999999999999998632
Q ss_pred ---cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 95 ---YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 95 ---~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
...++++++++...+++.+++.+......+.. +++||+||||+|.|+.+++++|+++||+++.+++||
T Consensus 83 ~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~---------~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifI 153 (559)
T PRK05563 83 TNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSE---------AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFI 153 (559)
T ss_pred hcCCCCCeEEeeccccCCHHHHHHHHHHHhhCccc---------CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEE
Confidence 13467888888778888888877765443322 267899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++|+.++++.++|+|||..++|.+++.+++..|++.+++++|+.+++++++.++..++|++|.+++.|+++..+. ++.|
T Consensus 154 latt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~-~~~I 232 (559)
T PRK05563 154 LATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFG-DGKV 232 (559)
T ss_pred EEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998875 6689
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
|.++|.++++....+.+++++++ ++...+...+.+++..|.++..++..+..+++.
T Consensus 233 t~~~V~~vlg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~~ 312 (559)
T PRK05563 233 TYEDALEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDE 312 (559)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHHH
Confidence 99999999999999999999987 899999999999999999999888887766552
Q ss_pred -----cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 -----ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 -----~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+.++++.+.+++..++.|.+.++.+|.++.+++.
T Consensus 313 ~~~~~a~~~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~ 359 (559)
T PRK05563 313 LFKELSEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCE 359 (559)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHh
Confidence 125778889999999999999999999999999999999987
No 22
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.5e-43 Score=331.81 Aligned_cols=307 Identities=21% Similarity=0.330 Sum_probs=272.3
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc-----------------
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM----------------- 94 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~----------------- 94 (355)
.+|.+||||++|++++||+++++.|.+++.+++.+| +||+||+|+|||++|+++++.+++..
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 578999999999999999999999999999999998 89999999999999999999998632
Q ss_pred --cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEE
Q psy17903 95 --YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (355)
Q Consensus 95 --~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il 172 (355)
...+++++++++..+++.+++.+......+..+ ++||+||||+|.|+...+++|+++||+++.+++||+
T Consensus 83 ~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~g---------k~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FIL 153 (702)
T PRK14960 83 EGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQG---------RFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLF 153 (702)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhhhhhcC---------CcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEE
Confidence 123678899887788999998877655433221 568999999999999999999999999999999999
Q ss_pred EecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy17903 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (355)
Q Consensus 173 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It 252 (355)
+|+++.++.++++|||..++|++++.+++..++..++.++|+.++++++..|++.++||+|.+++.++++..+ +++.|+
T Consensus 154 aTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIay-g~g~IT 232 (702)
T PRK14960 154 ATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAY-GQGAVH 232 (702)
T ss_pred EECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988776 567899
Q ss_pred HHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------------------
Q psy17903 253 NEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS---------------------- 307 (355)
Q Consensus 253 ~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~---------------------- 307 (355)
.++|.++++....+.+++++++ ++...+...++++...|+++..++..+..+++.
T Consensus 233 ~edV~~lLG~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~ 312 (702)
T PRK14960 233 HQDVKEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKI 312 (702)
T ss_pred HHHHHHHhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHH
Confidence 9999999999999999999998 889999999999999999988776665544331
Q ss_pred ---cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 ---ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 ---~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+.+.++.+.+....|+...+.++.+|.++.+++.
T Consensus 313 ~~la~~~s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~ 357 (702)
T PRK14960 313 LQLSKLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLA 357 (702)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Confidence 134667777888899999999999999999999999999974
No 23
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.7e-43 Score=336.05 Aligned_cols=307 Identities=22% Similarity=0.359 Sum_probs=275.6
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc----------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM---------------- 94 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~---------------- 94 (355)
...|.+||||++|++++||++++..|.+++..++.+| |||+||+|+|||++|+.+++.+++..
T Consensus 3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 4679999999999999999999999999999999999 89999999999999999999998631
Q ss_pred --------cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccC
Q psy17903 95 --------YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETK 166 (355)
Q Consensus 95 --------~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~ 166 (355)
...+++++++....+++.+++.+......+.. +++||+||||+|.|+.+.++.|+++||+++.
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~---------g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~ 153 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQ---------GRFKVFMIDEVHMLTNTAFNAMLKTLEEPPE 153 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCccc---------CCceEEEEEChhhCCHHHHHHHHHhcccCCC
Confidence 12357888888888999999888765444322 2678999999999999999999999999999
Q ss_pred CccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q psy17903 167 STRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246 (355)
Q Consensus 167 ~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 246 (355)
+++|||+|+++.++.++++|||..++|++++.+++..+++.++.++|+.++++++..|++.++||+|.++++++++..+
T Consensus 154 ~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~- 232 (618)
T PRK14951 154 YLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAF- 232 (618)
T ss_pred CeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999988877
Q ss_pred CCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------------
Q psy17903 247 GGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS---------------- 307 (355)
Q Consensus 247 ~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~---------------- 307 (355)
+++.||.++|.++++....+.+++++++ ++...+...++++...|+++..++..+..+++.
T Consensus 233 ~~~~It~~~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~ 312 (618)
T PRK14951 233 GSGQLQEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATD 312 (618)
T ss_pred cCCCcCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccccCh
Confidence 4678999999999999999999999998 899999999999999999999999887765542
Q ss_pred ---------cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy17903 308 ---------ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVI 348 (355)
Q Consensus 308 ---------~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~ 348 (355)
...++...+...++.+......++...+.++.+|+.+.+++
T Consensus 313 ~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~ 362 (618)
T PRK14951 313 PEAAEVARLAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLL 362 (618)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHh
Confidence 12456677778889999999999888999999999999986
No 24
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.1e-43 Score=331.74 Aligned_cols=309 Identities=20% Similarity=0.314 Sum_probs=271.0
Q ss_pred CCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc---------------
Q psy17903 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM--------------- 94 (355)
Q Consensus 31 ~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~--------------- 94 (355)
+...|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.+++..
T Consensus 2 sy~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C 81 (700)
T PRK12323 2 SYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQC 81 (700)
T ss_pred cchhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCccc
Confidence 35679999999999999999999999999999999999 89999999999999999999998721
Q ss_pred ---------cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc
Q psy17903 95 ---------YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET 165 (355)
Q Consensus 95 ---------~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~ 165 (355)
...+++++++....+++.+++.+......+.. +++||+||||+|.|+...+|.|++.||+++
T Consensus 82 ~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~---------gr~KViIIDEah~Ls~~AaNALLKTLEEPP 152 (700)
T PRK12323 82 RACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTA---------GRFKVYMIDEVHMLTNHAFNAMLKTLEEPP 152 (700)
T ss_pred HHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhc---------CCceEEEEEChHhcCHHHHHHHHHhhccCC
Confidence 11267889988888999999888765544322 167899999999999999999999999999
Q ss_pred CCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q psy17903 166 KSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245 (355)
Q Consensus 166 ~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 245 (355)
.+++||++|++..++.++|+|||..++|++++.+++.+++++++.++++.+++++++.|++.++|++|.++++++.+..+
T Consensus 153 ~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~ 232 (700)
T PRK12323 153 EHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAY 232 (700)
T ss_pred CCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876665
Q ss_pred hCCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------
Q psy17903 246 KGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------- 307 (355)
Q Consensus 246 ~~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------- 307 (355)
+++.|+.+.|.++++....+.+.++++. ++...+..++..+...|++...++..+..++..
T Consensus 233 -~~~~It~~~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~ 311 (700)
T PRK12323 233 -SAGNVSEEAVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDW 311 (700)
T ss_pred -ccCCcCHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhccccc
Confidence 3457999999999999988888888877 889999999999999999976555554433331
Q ss_pred ---------cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 ---------ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 ---------~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+...++.+......|+...+.++.+|+.+.+++.
T Consensus 312 ~~~~~~~~~a~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~ 362 (700)
T PRK12323 312 PEADDIRRLAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLA 362 (700)
T ss_pred chHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence 123677788888999999999999999999999999999864
No 25
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.1e-42 Score=339.22 Aligned_cols=308 Identities=22% Similarity=0.317 Sum_probs=271.7
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc---------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~--------------- 95 (355)
-.+|.+||||.+|++++||++++..|++++..++.+| |||+||+|+|||++|+.+++.+++...
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 4689999999999999999999999999999999999 799999999999999999999987421
Q ss_pred ----ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 96 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
...++++++.+..+++.+++.+..+...+.. +++||+||||+|.|+.++++.|+++||+++.+++||
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~---------gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFI 153 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSR---------GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFL 153 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhhc---------CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 1235677877667888898887766543322 267899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++|++..++.++|+|||..++|++++.+++..+|++++..+++.++++++..|+..++|++|.++++++.+..+ +.+.|
T Consensus 154 LaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~-~~~~I 232 (944)
T PRK14949 154 LATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAF-GGGQV 232 (944)
T ss_pred EECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877655 45679
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
+.+.|.++++......+.++++. ++...+..++..++..|+++..++..|..+++.
T Consensus 233 t~~~V~~llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~~e~i~ 312 (944)
T PRK14949 233 MLTQVQTMLGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQIR 312 (944)
T ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccchHHHHH
Confidence 99999999999887777777776 799999999999999999999999988776663
Q ss_pred --cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 --ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 --~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+.++++.+.+...+|+.+.+.++.||.++.+++.
T Consensus 313 ~~a~~~s~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~ 356 (944)
T PRK14949 313 AFAEQLSPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVA 356 (944)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence 123556667778999999999999999999999999999874
No 26
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.5e-42 Score=319.51 Aligned_cols=308 Identities=20% Similarity=0.326 Sum_probs=275.2
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCC-------ccccceeeec
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGD-------MYRERILELN 103 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~-------~~~~~~~~~~ 103 (355)
..+|++||||.+|++++||+.+++.+.+.++.+..+| +|||||+|+|||++++++++.+.+. ..+..+++++
T Consensus 4 ~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~ 83 (367)
T PRK14970 4 FVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD 83 (367)
T ss_pred hHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec
Confidence 4689999999999999999999999999999998886 9999999999999999999998762 2345567777
Q ss_pred CCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCcccccc
Q psy17903 104 ASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183 (355)
Q Consensus 104 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 183 (355)
.....+.+.+++.+......+..+ ++++|||||+|.++...++.|++++++++..++||++++...++.++
T Consensus 84 ~~~~~~~~~i~~l~~~~~~~p~~~---------~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~ 154 (367)
T PRK14970 84 AASNNSVDDIRNLIDQVRIPPQTG---------KYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPT 154 (367)
T ss_pred cccCCCHHHHHHHHHHHhhccccC---------CcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHH
Confidence 666666778877776654333222 56799999999999999999999999998899999999999999999
Q ss_pred ccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCC
Q psy17903 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263 (355)
Q Consensus 184 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~ 263 (355)
+++||..++|.+++.+++..|+..+++++|+.+++++++.++..++||+|.+.+++++++.|.+.. ||.+++.+++...
T Consensus 155 l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~-it~~~v~~~~~~~ 233 (367)
T PRK14970 155 ILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKN-ITRQAVTENLNIL 233 (367)
T ss_pred HHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC-CCHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999999987655 9999999999999
Q ss_pred ChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------------------------cCCCCHH
Q psy17903 264 PNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------------ASSLSDK 314 (355)
Q Consensus 264 ~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------------~~~~~~~ 314 (355)
..+.+++++++ ++...+...++++...|.++..++..+.++++. .+.++..
T Consensus 234 ~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~a~~~s~~ 313 (367)
T PRK14970 234 DYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQSQKVSQS 313 (367)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHHHHcCCHH
Confidence 99999999998 899999999999999999999999888776552 2568899
Q ss_pred HHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 315 QKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 315 ~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
.+.++++.+.++|+.+|++.+..+.+|.++.+++.
T Consensus 314 ~L~~~l~~l~~~d~~lK~~~~~~l~lE~~l~~l~~ 348 (367)
T PRK14970 314 FLLSGIDIANDCDLKYKLSKNQRLLVELALMQLAS 348 (367)
T ss_pred HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhh
Confidence 99999999999999999999999999999999975
No 27
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3e-42 Score=330.28 Aligned_cols=308 Identities=22% Similarity=0.345 Sum_probs=275.8
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc---------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~--------------- 95 (355)
...|.+||||++|++++||+++++.|.+++..++.+| +||+||+|+|||++|+.+++.+++...
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i 82 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQI 82 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHH
Confidence 4579999999999999999999999999999999998 999999999999999999999876421
Q ss_pred ----ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 96 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
..+++++++....+++.+++.+......+..+ +++|+||||+|.|+...++.|+++||+++.+++||
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~g---------k~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fI 153 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAG---------KYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhC---------CcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEE
Confidence 12467888888888888988877644333222 56899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++|++..++.++++|||..+.|++++.+++..+|.++++++|+.++++++..|++.++||+|.++++|+++..+ +.+.|
T Consensus 154 LaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~-g~g~I 232 (709)
T PRK08691 154 LATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIAL-GSGKV 232 (709)
T ss_pred EEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHh-cCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998887 46689
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
+.++|..+++......+++++++ ++...+...+++++..|++...++..|..+++.
T Consensus 233 t~e~V~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~ 312 (709)
T PRK08691 233 AENDVRQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDIL 312 (709)
T ss_pred CHHHHHHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHH
Confidence 99999999999999999999998 999999999999999999999998887766553
Q ss_pred ---cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 ---ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 ---~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+...++.+......|+...+.++.+|..+.+++.
T Consensus 313 ~~~a~~~~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~ 357 (709)
T PRK08691 313 HRLAQTISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLA 357 (709)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 245677778888999999999999899999999999999864
No 28
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=3.7e-42 Score=330.56 Aligned_cols=309 Identities=21% Similarity=0.292 Sum_probs=276.3
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc----------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM---------------- 94 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~---------------- 94 (355)
...|.+||||.+|++++||++++..|.+++.+++.+| ||||||+|+|||++|+++++.+.+..
T Consensus 3 y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i 82 (563)
T PRK06647 3 YRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSI 82 (563)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHH
Confidence 3568999999999999999999999999999999999 99999999999999999999998631
Q ss_pred ---cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 95 ---YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 95 ---~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
...+++++++....+++.+++........+.. ++++++||||+|.|+.+++++|++++|+++.+++||
T Consensus 83 ~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~---------~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI 153 (563)
T PRK06647 83 DNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPAS---------SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFI 153 (563)
T ss_pred HcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhc---------CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEE
Confidence 12456778777667788888766554433322 267899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++++++.++.++|+|||..++|.+++.+++..|++.+++.+|+.++++++..|++.++||+|.++++|++++.+. ++.|
T Consensus 154 ~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~-~~~I 232 (563)
T PRK06647 154 FATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFS-DSDI 232 (563)
T ss_pred EecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhc-CCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998875 4679
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
|.+++.++++....+.+++++++ ++...+..++.+++..|.++..++..+.++++.
T Consensus 233 t~e~V~~llg~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~l 312 (563)
T PRK06647 233 TLEQIRSKMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAERL 312 (563)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHHH
Confidence 99999999999999999999988 899999999999999999999999888776652
Q ss_pred ---cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q psy17903 308 ---ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350 (355)
Q Consensus 308 ---~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~~ 350 (355)
...++...+.++++.+.++++.++.+.+.++.||.++.+++..
T Consensus 313 ~k~~~~~s~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~ 358 (563)
T PRK06647 313 PEKLREFDLSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRL 358 (563)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence 1247888889999999999999999999999999999999853
No 29
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=6.3e-42 Score=318.02 Aligned_cols=306 Identities=25% Similarity=0.384 Sum_probs=269.9
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc----------------
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY---------------- 95 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~---------------- 95 (355)
.||++||||.+|++++|++++++.|.+++..++.+| +||+||+|+|||++|+.+++.+.+...
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 489999999999999999999999999999999988 999999999999999999999875321
Q ss_pred ---ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEE
Q psy17903 96 ---RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (355)
Q Consensus 96 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il 172 (355)
..+++++++....+.+.+++.+......+.. +++++|||||+|.++...++.|++++++++.+++||+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~---------~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSS---------GKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCccc---------CCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEE
Confidence 2456777776556666777666654433322 2668999999999999999999999999999999999
Q ss_pred EecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy17903 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (355)
Q Consensus 173 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It 252 (355)
+++++.++.+++++||..++|.+++.+++..|+..+++++|+.+++++++.+++.++||+|.+.++++++..+.+ +.||
T Consensus 153 ~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~-~~it 231 (355)
T TIGR02397 153 ATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGN-GNIT 231 (355)
T ss_pred EeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcC-CCCC
Confidence 999999899999999999999999999999999999999999999999999999999999999999999998754 5699
Q ss_pred HHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------------------
Q psy17903 253 NEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS---------------------- 307 (355)
Q Consensus 253 ~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~---------------------- 307 (355)
.++|++++.......+++++++ ++...+..++.++...|.++..++..+.++++.
T Consensus 232 ~~~v~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l 311 (355)
T TIGR02397 232 YEDVNELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFL 311 (355)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHH
Confidence 9999999999999999999888 899999999999999999998888877665542
Q ss_pred ---cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy17903 308 ---ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVI 348 (355)
Q Consensus 308 ---~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~ 348 (355)
...++...+..+++.+.++++.+|+|.|..+.||.|+.++|
T Consensus 312 ~~~a~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 312 KELALKLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 24567777888899999999999999999999999999886
No 30
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.2e-42 Score=324.17 Aligned_cols=304 Identities=23% Similarity=0.305 Sum_probs=270.5
Q ss_pred cccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCC------------------cc
Q psy17903 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGD------------------MY 95 (355)
Q Consensus 35 ~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~------------------~~ 95 (355)
+.+||||.+|++++||++++..|.+++..++.+| +||+||||+|||++|+++++.+.+. ..
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~ 83 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGA 83 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCC
Confidence 4599999999999999999999999999999999 7999999999999999999999752 12
Q ss_pred ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEec
Q psy17903 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175 (355)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 175 (355)
..+++++++....+++.+++........+..+ ++++|||||+|.++.+.++.|++++++++.+++||++++
T Consensus 84 h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~---------~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~ 154 (504)
T PRK14963 84 HPDVLEIDAASNNSVEDVRDLREKVLLAPLRG---------GRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATT 154 (504)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccC---------CCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcC
Confidence 34578888887788888888655544333221 567999999999999999999999999999999999999
Q ss_pred CCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHH
Q psy17903 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNED 255 (355)
Q Consensus 176 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~ 255 (355)
.+.++.+++++||..++|.+++.+++..|++.+++++|+.+++++++.+++.++||+|.++++|+++..+ ++.||.++
T Consensus 155 ~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~--~~~It~~~ 232 (504)
T PRK14963 155 EPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL--GTPVTRKQ 232 (504)
T ss_pred ChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc--CCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998765 45899999
Q ss_pred HHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh------------cCCCCHHHHHHHH
Q psy17903 256 VLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS------------ASSLSDKQKALIL 320 (355)
Q Consensus 256 v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~------------~~~~~~~~~~~i~ 320 (355)
|.++++...++.+++++++ ++...+...+++|+..|+++..|+..+.++++. ...+++..+.+++
T Consensus 233 V~~~l~~~~~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~~~~~~~~~~~~l 312 (504)
T PRK14963 233 VEEALGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPRLEGAEPRLLAAM 312 (504)
T ss_pred HHHHHCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCcccccccCcHHHHHHH
Confidence 9999999999999999998 899999999999999999999999999999882 1245778889999
Q ss_pred HHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q psy17903 321 EKLAECNARLQDGASEYIQILDLGSIVIKA 350 (355)
Q Consensus 321 ~~l~~~~~~l~~g~~~~~~l~~~~~~~~~~ 350 (355)
..|.+.++++.+|.+ +..||.-+++++..
T Consensus 313 ~~l~~~~~~~~~~~~-~~~l~~~l~~~~~~ 341 (504)
T PRK14963 313 TALDEQMERFARRSD-ALSLELALLHALLA 341 (504)
T ss_pred HHHHHHHHHHHhccc-hhHHHHHHHHHHhh
Confidence 999999999999875 56688888888753
No 31
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=6.4e-42 Score=331.23 Aligned_cols=311 Identities=24% Similarity=0.377 Sum_probs=274.7
Q ss_pred CCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc-------------
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY------------- 95 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~------------- 95 (355)
+.-.+|.+||||.+|++++||+.+++.|.+++..++.+| |||+||+|+|||++|+++++.+.+...
T Consensus 3 m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred cchhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 455799999999999999999999999999999999999 899999999999999999999987321
Q ss_pred ---ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEE
Q psy17903 96 ---RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (355)
Q Consensus 96 ---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il 172 (355)
+.+++++++....+++.+++.+......+..+ +++|+||||+|.|+.+++++|+++||+++.+++||+
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g---------~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifIL 153 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS---------KYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFIL 153 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcC---------CCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEE
Confidence 23456777766677888888877766554332 678999999999999999999999999999999999
Q ss_pred EecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy17903 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (355)
Q Consensus 173 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It 252 (355)
+|+.++++.++|+|||..++|.+++.+++..|+..++.++|+.+++++++.++..++|++|.+++.+++++.+. .+.|+
T Consensus 154 aTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~-~~~It 232 (725)
T PRK07133 154 ATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFG-NNKIT 232 (725)
T ss_pred EcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998875 55699
Q ss_pred HHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---------------------
Q psy17903 253 NEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA--------------------- 308 (355)
Q Consensus 253 ~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--------------------- 308 (355)
.+++.++++....+.+++++++ ++...+..++.++...|.++..++..+..+++..
T Consensus 233 ~e~V~ellg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~~~l~ 312 (725)
T PRK07133 233 LKNVEELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLE 312 (725)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHH
Confidence 9999999999999989998887 7899999999999999999998888776655520
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q psy17903 309 -SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350 (355)
Q Consensus 309 -~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~~ 350 (355)
..++...+.++++.+.++...|+.+.+.++.+|.++.+++..
T Consensus 313 ~~~~s~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~~ 355 (725)
T PRK07133 313 KLKIDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLAL 355 (725)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhc
Confidence 024455666778999999999999999999999999999753
No 32
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=7.4e-42 Score=329.35 Aligned_cols=308 Identities=21% Similarity=0.302 Sum_probs=268.0
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc---------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~--------------- 95 (355)
..+|.+||||++|++++||++++..|.+.+..++.+| |||+||+|+|||++|+.+++.+++...
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 4679999999999999999999999999999999999 899999999999999999999987421
Q ss_pred ----ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 96 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
..+++++++....+++.+++.+..+...+..+ ++||+||||+|.|+..++|+|+++||+++.+++||
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g---------~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FI 153 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARG---------RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcC---------CCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEE
Confidence 12567888876678889998877665443322 67899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++|+++.++.++|+|||..++|++++.+++..+|.+++..+++.++++++..|+..++|++|.+++.++.+..+ +++.|
T Consensus 154 L~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~-~~~~i 232 (647)
T PRK07994 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIAS-GNGQV 232 (647)
T ss_pred EecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999877655 45679
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
+.+++.++++....+.+.+++++ ++...+..++.++...|.++..++..+...++.
T Consensus 233 t~~~v~~~lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~~ 312 (647)
T PRK07994 233 TTDDVSAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELR 312 (647)
T ss_pred CHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHHH
Confidence 99999999998877778788876 789999999999998899888777665543331
Q ss_pred ----cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 ----ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 ----~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+...++.+.+....|+.+.|.++.+|.++.++..
T Consensus 313 l~~la~~~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~ 358 (647)
T PRK07994 313 LRELARTLPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLA 358 (647)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 123556666677888999999999999999999999999853
No 33
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1e-41 Score=324.03 Aligned_cols=308 Identities=19% Similarity=0.306 Sum_probs=272.2
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc----------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM---------------- 94 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~---------------- 94 (355)
..+|++||||.+|++++||++++..|.+.+..++.+| +||+||+|+|||++|+.+++.+++..
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i 82 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAI 82 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 5689999999999999999999999999999999999 99999999999999999999997621
Q ss_pred ---cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 95 ---YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 95 ---~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
...+++++++....+++.+++.+..+...+..+ +++|+||||+|.|+.++++.|+++||+++.+++||
T Consensus 83 ~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g---------~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fI 153 (546)
T PRK14957 83 NNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQG---------RYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFI 153 (546)
T ss_pred hcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcC---------CcEEEEEechhhccHHHHHHHHHHHhcCCCCceEE
Confidence 113567788777788888888887765444322 67899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++|++..++.++|+|||..++|.+++.+++..++..+++++|+.+++++++.+++.++||+|.+++.|+++..+.+ +.|
T Consensus 154 L~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~-~~I 232 (546)
T PRK14957 154 LATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCG-GEL 232 (546)
T ss_pred EEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc-CCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988765 689
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH----------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVM---------------------- 306 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~---------------------- 306 (355)
+.+++.++++....+.+++++++ ++...+...+..+...|.+...++..+.+...
T Consensus 233 t~~~V~~~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~~~~~~~~~~i 312 (546)
T PRK14957 233 KQAQIKQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVNDIDVDII 312 (546)
T ss_pred CHHHHHHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchhhHHHH
Confidence 99999999999888889999988 79999999999999989888888877662111
Q ss_pred --hcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 307 --SASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 307 --~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
....++...+..+++.+.+....|+.+.+.++.+|..+.+++.
T Consensus 313 ~~~a~~~s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~ 357 (546)
T PRK14957 313 NNILAKISIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIA 357 (546)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 0134677778888999999999999999999999999999864
No 34
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2e-41 Score=319.43 Aligned_cols=306 Identities=22% Similarity=0.345 Sum_probs=269.7
Q ss_pred ccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc-----------------
Q psy17903 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY----------------- 95 (355)
Q Consensus 34 ~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~----------------- 95 (355)
.|.+||||++|++++||+++...|.+.+..++.+| +||+||||+|||++|+++++.+++...
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 68899999999999999999999999999999988 999999999999999999999876321
Q ss_pred --ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEE
Q psy17903 96 --RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173 (355)
Q Consensus 96 --~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~ 173 (355)
...+++++++...+++.++.........+.. +++++|||||+|.|+.++++.|++++++++.+++||++
T Consensus 83 g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~---------~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ila 153 (472)
T PRK14962 83 GTFMDVIELDAASNRGIDEIRKIRDAVGYRPME---------GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLA 153 (472)
T ss_pred CCCCccEEEeCcccCCHHHHHHHHHHHhhChhc---------CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEE
Confidence 2257888888778888888655443332222 15679999999999999999999999999999999999
Q ss_pred ecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCH
Q psy17903 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN 253 (355)
Q Consensus 174 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~ 253 (355)
|+++.++.+++++||..++|.+++.+++..+++.+++.+++.+++++++.|++.++||+|.+++.|++++.+.+ +.||.
T Consensus 154 ttn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~-~~It~ 232 (472)
T PRK14962 154 TTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSE-GKITL 232 (472)
T ss_pred eCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC-CCCCH
Confidence 99888999999999999999999999999999999999999999999999999999999999999999887654 45999
Q ss_pred HHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHHHHH
Q psy17903 254 EDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSD-KQKALILEKLAECNAR 329 (355)
Q Consensus 254 ~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~-~~~~~i~~~l~~~~~~ 329 (355)
+++.++++....+.+++++++ +|...+..++.+++..|+++..++..+..++....+..+ .....+...+.++-..
T Consensus 233 e~V~~~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~~a~~~~~~~~~~~~~~~~~~ 312 (472)
T PRK14962 233 ETVHEALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLERERANDIIQVSRQLLNILRE 312 (472)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHH
Confidence 999999999999999999998 899999999999999999999999999999987655555 6777788888888888
Q ss_pred hhCCCChHHHHHHHHHHHHH
Q psy17903 330 LQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 330 l~~g~~~~~~l~~~~~~~~~ 349 (355)
++..-...+..+..+..++.
T Consensus 313 i~~~e~~~~l~~~~~~~~~~ 332 (472)
T PRK14962 313 IKFAEEKRLVCKLGSASIAT 332 (472)
T ss_pred hCCcchHHHHHHHHHHHHHH
Confidence 86666777788888888775
No 35
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.4e-41 Score=320.37 Aligned_cols=307 Identities=24% Similarity=0.355 Sum_probs=271.6
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc---------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~--------------- 95 (355)
..+|.+||||.+|++++||++++..|.+++..++.+| ||||||+|+|||++|+.+++.+++...
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i 82 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEI 82 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHH
Confidence 4699999999999999999999999999999999999 899999999999999999999975210
Q ss_pred ----ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 96 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
..++++++++...+++.++.........+..+ +++|+||||+|.|+.++++.|++++++++.+++||
T Consensus 83 ~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~---------~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~I 153 (486)
T PRK14953 83 DKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKG---------KYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFI 153 (486)
T ss_pred hcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccC---------CeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEE
Confidence 12466777777778888887655544433322 67899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++|++.+++.+++++||..+.|.+++.+++..|+..+++.+|+.+++++++.++..++||+|.+.++|+++..++ ++.|
T Consensus 154 l~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~-~~~I 232 (486)
T PRK14953 154 LCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYG-EGKV 232 (486)
T ss_pred EEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-CCCc
Confidence 999999899999999999999999999999999999999999999999999999999999999999999998774 6689
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA-------------------- 308 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~-------------------- 308 (355)
|.++|.++++......+++++++ ++...+..+++++...|+++..++..+.++++..
T Consensus 233 t~~~V~~~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~~~~~ 312 (486)
T PRK14953 233 TIKVVEEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFYR 312 (486)
T ss_pred CHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchHHHHH
Confidence 99999999999999999999988 8999999999999999999999999988877641
Q ss_pred -CCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 309 -SSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 309 -~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
..++...+.++++.+.++...|+. .|.++.+|.++.+++.
T Consensus 313 ~~~~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~ 353 (486)
T PRK14953 313 KLEKPLEALLYLEDVINKAFSEART-RDPLRAYELAILKLLY 353 (486)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHh
Confidence 113355666788999999999999 9999999999999974
No 36
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2e-41 Score=330.00 Aligned_cols=307 Identities=20% Similarity=0.290 Sum_probs=274.0
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc----------------
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY---------------- 95 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~---------------- 95 (355)
..|.+||||.+|++++||++++..|..++..++.+| +||+||+|+|||++|+.+++.+++...
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 347899999999999999999999999999999888 899999999999999999999975321
Q ss_pred ----ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 96 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
..+++++++....+++.+++.+......+.. ++++||||||+|.|+.+.++.|+++||+++.+++||
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~---------~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~I 154 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDAREIIERVQFRPAL---------ARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFI 154 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHHHHHHHHHhhCccc---------CCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEE
Confidence 1346677776667888888777654433322 267899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
+++++.+++.+++++||..+.|.+++..++..++..++.++|+.+++++++.|++.++||+|.++++|++++.+ +++.|
T Consensus 155 l~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y-~~~~I 233 (585)
T PRK14950 155 LATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATT-YGGEI 233 (585)
T ss_pred EEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887 45689
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
|.+++.+++.......+++++++ ++...+..+++++...|.++.+++..+.++++.
T Consensus 234 t~e~V~~ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~~ 313 (585)
T PRK14950 234 SLSQVQSLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKA 313 (585)
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHH
Confidence 99999999999999999999998 899999999999999999999999877766542
Q ss_pred -----cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 -----ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 -----~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
.+.++...+.++++.+.++|+.+|+|.++++.+|.+|.+++.
T Consensus 314 ~~~~qa~~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~ 360 (585)
T PRK14950 314 ALQKVSQIANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALL 360 (585)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhc
Confidence 246888899999999999999999998789999999999874
No 37
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.4e-41 Score=323.01 Aligned_cols=309 Identities=19% Similarity=0.280 Sum_probs=267.1
Q ss_pred CCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc---------------
Q psy17903 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM--------------- 94 (355)
Q Consensus 31 ~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~--------------- 94 (355)
+..+|++||||++|++++||++++..|.+++.+++.+| |||+||+|+|||++|+.+++.+++..
T Consensus 2 s~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~ 81 (624)
T PRK14959 2 SHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRK 81 (624)
T ss_pred CcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHH
Confidence 35689999999999999999999999999999998777 99999999999999999999998632
Q ss_pred ----cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccE
Q psy17903 95 ----YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRF 170 (355)
Q Consensus 95 ----~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~ 170 (355)
...+++++++....+++.++.....+...+..+ +++||||||+|.|+.+.++.|+++||+++..++|
T Consensus 82 i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g---------~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~if 152 (624)
T PRK14959 82 VTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEG---------RYKVFIIDEAHMLTREAFNALLKTLEEPPARVTF 152 (624)
T ss_pred HhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcC---------CceEEEEEChHhCCHHHHHHHHHHhhccCCCEEE
Confidence 123477888776778888887655544333221 5689999999999999999999999999999999
Q ss_pred EEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCC
Q psy17903 171 CLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250 (355)
Q Consensus 171 Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~ 250 (355)
|++|+...++.++|+|||..++|++++.+++..+|..++.++++.+++++++.|++.++||+|.++++|+++.. .+.+.
T Consensus 153 ILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~-~g~~~ 231 (624)
T PRK14959 153 VLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLA-LGESR 231 (624)
T ss_pred EEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH-hcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998763 45668
Q ss_pred CCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------------------
Q psy17903 251 IVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS-------------------- 307 (355)
Q Consensus 251 It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-------------------- 307 (355)
||.++|.++++....+.+++++++ ++...+..++..++..|.++..++..|..+++.
T Consensus 232 It~d~V~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~ 311 (624)
T PRK14959 232 LTIDGARGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPED 311 (624)
T ss_pred cCHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHH
Confidence 999999999999988888888887 789999999999988888887777665544431
Q ss_pred --------cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 --------ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 --------~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+.++++.+.+....|+.+.+.++.+|.++.+++.
T Consensus 312 ~~~~~~~~A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~ 361 (624)
T PRK14959 312 EARQWLGWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAM 361 (624)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 123556666677889999999999999999999999999863
No 38
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=6.6e-42 Score=319.59 Aligned_cols=308 Identities=24% Similarity=0.366 Sum_probs=277.5
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc-----------------
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM----------------- 94 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~----------------- 94 (355)
..+..||||++|++++||+++...|...+..++..| |+|+||.|+|||++|+.+++.+++..
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~ 83 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEIN 83 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhh
Confidence 467899999999999999999999999999999999 99999999999999999999998753
Q ss_pred --cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEE
Q psy17903 95 --YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCL 172 (355)
Q Consensus 95 --~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il 172 (355)
...+++++|+....+++++|+........+..+ ++||.||||+|.|+.+++|+|++.||+||.+++|||
T Consensus 84 ~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~---------ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIl 154 (515)
T COG2812 84 EGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEG---------RYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFIL 154 (515)
T ss_pred cCCcccchhhhhhhccChHHHHHHHHHhccCCccc---------cceEEEEecHHhhhHHHHHHHhcccccCccCeEEEE
Confidence 124678999999999999999888765444332 788999999999999999999999999999999999
Q ss_pred EecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCC
Q psy17903 173 ICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIV 252 (355)
Q Consensus 173 ~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It 252 (355)
+|++++++.+++.|||+.++|+.++.+++...+..++.++++.++++++..+++.++|++|.+++.|+.+..+++ +.||
T Consensus 155 ATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~-~~It 233 (515)
T COG2812 155 ATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGE-GEIT 233 (515)
T ss_pred ecCCcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccC-Cccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998865 7899
Q ss_pred HHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------------------
Q psy17903 253 NEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS---------------------- 307 (355)
Q Consensus 253 ~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~---------------------- 307 (355)
.+.|.++++....+.+..++.+ +|...+...++++.+.|+++..++..+..+++.
T Consensus 234 ~~~v~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 313 (515)
T COG2812 234 LESVRDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIEER 313 (515)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhhHH
Confidence 9999999999999999988888 999999999999999999999888887766642
Q ss_pred ----cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q psy17903 308 ----ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350 (355)
Q Consensus 308 ----~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~~ 350 (355)
...++...+.++++.+......++.+.+.++.+|.++.+++..
T Consensus 314 ~~~~a~~~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~ 360 (515)
T COG2812 314 TKELASQISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEA 360 (515)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhh
Confidence 1224445566677888888888888999999999999999764
No 39
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.5e-41 Score=321.19 Aligned_cols=308 Identities=23% Similarity=0.332 Sum_probs=271.5
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc---------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~--------------- 95 (355)
...|++||||++|++++||+++++.|.+++..++.+| |||+||+|+|||++|+.+++.++++..
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i 82 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEI 82 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 4579999999999999999999999999999999999 899999999999999999999986321
Q ss_pred ----ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 96 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
..++++++++...+++.+++.+......+.. +++||+||||+|.|+.++++.|+++||+++.+++||
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~---------~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fI 153 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTR---------GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFI 153 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHHHHHHHHhhCccc---------CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEE
Confidence 1256778877677888888877765433322 267899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++|+++.++.++++|||..++|++++.+++..++.++++++|+.++++++..+++.++||+|.+++.++++..+ +++.|
T Consensus 154 L~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~-~~~~I 232 (527)
T PRK14969 154 LATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAY-GGGTV 232 (527)
T ss_pred EEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCc
Confidence 99999999998999999999999999999999999999999999999999999999999999999999998887 57789
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
+.++|.++++....+.+++++++ ++...+...++++...|.+...++..+..+++.
T Consensus 233 ~~~~v~~~~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~~ 312 (527)
T PRK14969 233 NESEVRAMLGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRL 312 (527)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHHH
Confidence 99999999999888889999887 789999999999999898888777766544442
Q ss_pred ---cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 ---ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 ---~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
...++...+..+++.+.+....|+...+.++.+|.++.+++.
T Consensus 313 ~~~a~~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~ 357 (527)
T PRK14969 313 LDLAKRLSPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLA 357 (527)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhc
Confidence 234677778888999999999999899999999999999863
No 40
>KOG2035|consensus
Probab=100.00 E-value=5.1e-41 Score=282.49 Aligned_cols=310 Identities=27% Similarity=0.444 Sum_probs=260.5
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCcc-----------------
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY----------------- 95 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~----------------- 95 (355)
..|.+||||++++.+.++.+....++.....+.+||+++|||+|.||.|.+.++.+++++...
T Consensus 1 ~LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk 80 (351)
T KOG2035|consen 1 MLWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK 80 (351)
T ss_pred CcchhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce
Confidence 379999999999999999999999999999999999999999999999999999999987211
Q ss_pred -------ccceeeecCCCccch--HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccC
Q psy17903 96 -------RERILELNASDDRGI--QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETK 166 (355)
Q Consensus 96 -------~~~~~~~~~~~~~~~--~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~ 166 (355)
....+++++++.... -.+++.+++.++......... ..+|+|+|.|+|.|+.++|.+|++.||.++.
T Consensus 81 lEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~q----r~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 81 LEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQ----RPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred EEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccc----cceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 123467777775444 467788888877654332211 1789999999999999999999999999999
Q ss_pred CccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q psy17903 167 STRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246 (355)
Q Consensus 167 ~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 246 (355)
++++|++||..++++++++|||..+.++.|+++|+..++..+++++|+.++.+.+..+++.++||+|+++-.|+.+....
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n 236 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNN 236 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred -----CCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHH
Q psy17903 247 -----GGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKAL 318 (355)
Q Consensus 247 -----~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~ 318 (355)
.+..|..-|.+..+.++ ...++.. ...-+.+..+|+|+.+.++|..|+..+...+.. +.+...+..
T Consensus 237 ~~~~a~~~~i~~~dWe~~i~e~----a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~--~~d~~~k~~ 310 (351)
T KOG2035|consen 237 EPFTANSQVIPKPDWEIYIQEI----ARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLL--KCDTQLKLE 310 (351)
T ss_pred ccccccCCCCCCccHHHHHHHH----HHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh--cCCchhHHH
Confidence 11334333333332211 1112221 334568889999999999999999999998888 677888899
Q ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHHh
Q psy17903 319 ILEKLAECNARLQDGASEYIQILDLGSIVIKANK 352 (355)
Q Consensus 319 i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~~~~ 352 (355)
+++..+++++++..|....+|||.|++++|...+
T Consensus 311 ~~~~Aa~yEhRl~lG~KaIfHLEaFVA~fM~iy~ 344 (351)
T KOG2035|consen 311 VIQHAAKYEHRLRLGQKAIFHLEAFVAKFMCIYK 344 (351)
T ss_pred HHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998765
No 41
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.5e-40 Score=314.36 Aligned_cols=266 Identities=23% Similarity=0.404 Sum_probs=240.7
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc---------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~--------------- 95 (355)
..+|.+||||.+|++++||+.+++.|.+++..++.+| +||+||+|+|||++|+.+++.+.+..+
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i 82 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESI 82 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 4689999999999999999999999999999999998 999999999999999999999986322
Q ss_pred ----ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 96 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
..++++++++...+++.+++.+..+...+..+ ++||+||||+|.|+.+++++|+++||+++.+++||
T Consensus 83 ~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~---------~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfI 153 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTF---------KYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFI 153 (605)
T ss_pred HcCCCCceEEeccccccCHHHHHHHHHHHHhchhhC---------CcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEE
Confidence 13567788777778888988877666544332 57899999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++|+.+.++.++++|||..++|.+++.+++..|+..++.++|+.+++++++.++..++||+|.+++.|++++.+.++ .|
T Consensus 154 L~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~-~I 232 (605)
T PRK05896 154 FATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNS-EI 232 (605)
T ss_pred EECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888653 49
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~ 307 (355)
+.+++.++++....+.+++++++ ++...+..++++++..|.++.+++..+..+++.
T Consensus 233 t~e~V~ellg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RD 291 (605)
T PRK05896 233 DIEDINKTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLID 291 (605)
T ss_pred CHHHHHHHhccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 99999999998888888998887 799999999999999999999999998877763
No 42
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.1e-40 Score=319.07 Aligned_cols=307 Identities=22% Similarity=0.343 Sum_probs=269.7
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc---------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~--------------- 95 (355)
..||.+||||++|++++||++++..|.+++..++.+| +||+||+|+|||++|+++++.+++...
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~ 82 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCR 82 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHH
Confidence 4689999999999999999999999999999988766 999999999999999999999987321
Q ss_pred ------ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCcc
Q psy17903 96 ------RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTR 169 (355)
Q Consensus 96 ------~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 169 (355)
..++++++.....+++.+++.+......+..+ ++||+||||+|.|+.++++.|+++||+++..++
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~---------~~KViIIDEad~Lt~~a~naLLK~LEePp~~tv 153 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQA---------RWKVYVIDECHMLSTAAFNALLKTLEEPPPRVV 153 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcC---------CceEEEEECccccCHHHHHHHHHHHhcCCcCeE
Confidence 12466777766678889998887654433322 678999999999999999999999999999999
Q ss_pred EEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCC
Q psy17903 170 FCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249 (355)
Q Consensus 170 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~ 249 (355)
||++|+++.++.++|+|||..++|.+++.+++..++..++.++++.++++++..+++.++|++|.++++|++++.+. +
T Consensus 154 fIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~--~ 231 (620)
T PRK14948 154 FVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLP--G 231 (620)
T ss_pred EEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc--C
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998875 5
Q ss_pred CCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------------------
Q psy17903 250 GIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS------------------- 307 (355)
Q Consensus 250 ~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~------------------- 307 (355)
.||.++|.++++......+++++++ ++...+..++.+++..|.++..++..+..+++.
T Consensus 232 ~It~e~V~~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~d 311 (620)
T PRK14948 232 PITPEAVWDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQQ 311 (620)
T ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCHH
Confidence 7999999999999888888888887 888999999999988888888777766554432
Q ss_pred --------cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 --------ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 --------~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
++.++...+..+++.+.++++.++.+.+.++.+|.++.+++.
T Consensus 312 ~~~~l~~~A~~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~ 361 (620)
T PRK14948 312 TWDELCKLAKQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLP 361 (620)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhc
Confidence 134677778888999999999999999999999999999974
No 43
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=100.00 E-value=2.7e-36 Score=275.65 Aligned_cols=297 Identities=28% Similarity=0.378 Sum_probs=245.6
Q ss_pred CCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 108 (355)
.+..+|.+||||++|++++|++++...+..+++.+..++ ++|+||+|+|||++++++++.+. .+++++++.+ .
T Consensus 6 ~~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~-----~~~~~i~~~~-~ 79 (316)
T PHA02544 6 PNEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVG-----AEVLFVNGSD-C 79 (316)
T ss_pred CCCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-----ccceEeccCc-c
Confidence 578999999999999999999999999999999999888 66699999999999999999873 3567788877 3
Q ss_pred chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCC-CHHHHHHHHHHhhhccCCccEEEEecCCccccccccCC
Q psy17903 109 GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM-THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187 (355)
Q Consensus 109 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l-~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 187 (355)
..+.+++.+..+....... +++++|||||+|.+ ..+.++.|..++++++.+++||+++|...++.+++++|
T Consensus 80 ~~~~i~~~l~~~~~~~~~~--------~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR 151 (316)
T PHA02544 80 RIDFVRNRLTRFASTVSLT--------GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSR 151 (316)
T ss_pred cHHHHHHHHHHHHHhhccc--------CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhh
Confidence 3566666555554332111 14579999999999 66778888889999999999999999999999999999
Q ss_pred eeeEEecCCCHHHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHh
Q psy17903 188 CSKFRFKPLAENTMLTRLQ-------YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260 (355)
Q Consensus 188 ~~~i~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~ 260 (355)
|..+.|+.|+.++...++. .++..+|+.++++++..+++.+.||+|.+++.++..+. ++.|+.+++....
T Consensus 152 ~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~---~~~i~~~~l~~~~ 228 (316)
T PHA02544 152 CRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS---TGKIDAGILSEVT 228 (316)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc---cCCCCHHHHHHhh
Confidence 9999999999988775544 44556899999999999999999999999999997653 3679988887755
Q ss_pred CCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChH
Q psy17903 261 GVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEY 337 (355)
Q Consensus 261 ~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~ 337 (355)
...+++++++ .+..+++. +...+ +.++.+++..+.+.+.. .+....+.++++.+++++..+..|.|..
T Consensus 229 ----~~~~~~l~~~l~~~d~~~~~~-~~~~~--~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 299 (316)
T PHA02544 229 ----NSDIDDVVEALKAKDFKAVRA-LAPNY--ANDYASFVGKLYDELYP--QVTPPSIIRLIEIIGENNQYHGFAADQE 299 (316)
T ss_pred ----HHHHHHHHHHHHcCCHHHHHH-HHHHh--ccCHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 4455666655 67777777 33322 67889999998887766 4678889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy17903 338 IQILDLGSIVIKANK 352 (355)
Q Consensus 338 ~~l~~~~~~~~~~~~ 352 (355)
+++|.|+.++|.+++
T Consensus 300 l~le~~l~~~~~~~~ 314 (316)
T PHA02544 300 IHLLYLLTQLMLECE 314 (316)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999997764
No 44
>KOG0990|consensus
Probab=100.00 E-value=1.8e-36 Score=260.52 Aligned_cols=326 Identities=33% Similarity=0.420 Sum_probs=277.5
Q ss_pred CCCCCCCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC-Cccccceeeec
Q psy17903 25 SGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELN 103 (355)
Q Consensus 25 ~~~~~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~-~~~~~~~~~~~ 103 (355)
++..+.+..||.+||||..+++++++++++..+.+....++.||+|+|||||+|||+...+.++.+.+ ..+...+.++|
T Consensus 21 ~p~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~leln 100 (360)
T KOG0990|consen 21 IPQSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELN 100 (360)
T ss_pred CCCCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhh
Confidence 34556788999999999999999999999999999999999999999999999999999999999988 44555578999
Q ss_pred CCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCcccccc
Q psy17903 104 ASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183 (355)
Q Consensus 104 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 183 (355)
+++..+++..++.+..|+.......-.. .+.+|+||+||+|.++.++|++|++.++++..+++|++.+|.+.++.|+
T Consensus 101 aSd~rgid~vr~qi~~fast~~~~~fst---~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ii~n~~~ki~pa 177 (360)
T KOG0990|consen 101 ASDDRGIDPVRQQIHLFASTQQPTTYST---HAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFATISNPPQKIHPA 177 (360)
T ss_pred ccCccCCcchHHHHHHHHhhccceeccc---cCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEEEeccChhhcCch
Confidence 9999999999999988876643211100 1267899999999999999999999999999999999999999999999
Q ss_pred ccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCC---CCCCHHHHHHHh
Q psy17903 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG---EGIVNEDVLEVT 260 (355)
Q Consensus 184 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~---~~It~~~v~~~~ 260 (355)
+++||..+.|.+++..+....+.+++..+....+++....+++.+.||+|.++|.|+..+.+.+. ..++.+.+..+.
T Consensus 178 ~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e~~~~~~~vy~c~ 257 (360)
T KOG0990|consen 178 QQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKELNNPNDLVYQCK 257 (360)
T ss_pred hhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCCCCchhhHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999988766522 236677799999
Q ss_pred CCCChHHHHHHHhc---CCHHHHHHHHHHH-HHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCCh
Q psy17903 261 GVIPNPWIEKLLKV---DSFQVLEKYIEDL-ILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASE 336 (355)
Q Consensus 261 ~~~~~~~~~~l~~~---~~~~~~~~~l~~l-~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~ 336 (355)
+...+.++.++++. ..+..+..-+..+ ...|+...+++..+...+... ++.......|+..++.+.++++.|-++
T Consensus 258 g~p~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~-~~~~~~~~~I~~~l~~Ie~~ls~g~~~ 336 (360)
T KOG0990|consen 258 GAPQPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIV-ISKTPVEGHILYQLADIEERLSKGCMQ 336 (360)
T ss_pred CCCChhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHH-hcchHHHHHHHHhHHHHHHHHhcchhH
Confidence 99999899888876 4443333333333 235777778887777665554 445577888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q psy17903 337 YIQILDLGSIVIKANKTA 354 (355)
Q Consensus 337 ~~~l~~~~~~~~~~~~~~ 354 (355)
.+++..+|..+...+++.
T Consensus 337 ~~ql~aii~~~~~~~~~~ 354 (360)
T KOG0990|consen 337 KEQLKAIIKNFAAELKAL 354 (360)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998877653
No 45
>PRK04132 replication factor C small subunit; Provisional
Probab=100.00 E-value=1.6e-35 Score=292.02 Aligned_cols=271 Identities=38% Similarity=0.614 Sum_probs=247.2
Q ss_pred EEEEC--CCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCC
Q psy17903 69 FLFYG--PPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146 (355)
Q Consensus 69 ~ll~G--p~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 146 (355)
.++.| |.+.||||+|.+++++++++.++.+++++|+++..+++.+++.+..++...... + .+++|+||||+
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~~----~---~~~KVvIIDEa 639 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIG----G---ASFKIIFLDEA 639 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC----C---CCCEEEEEECc
Confidence 56678 888899999999999998887888999999999999999999998877553321 1 14689999999
Q ss_pred CCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q psy17903 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVE 226 (355)
Q Consensus 147 d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 226 (355)
|.|+.++|++|+++||+++.+++||++||++.++.++|+|||..+.|++++.+++...+..+|+++++.++++++..++.
T Consensus 640 D~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~ 719 (846)
T PRK04132 640 DALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILY 719 (846)
T ss_pred ccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHH-HcCCCHHHHHHHHH
Q psy17903 227 TSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLI-LEAYSATQLFDQFH 302 (355)
Q Consensus 227 ~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~-~~g~~~~~i~~~l~ 302 (355)
.++||+|.+++.||.++.. ...||.+++..+.....++.++++++. ++...++..+++++ ..|+++.+++..+.
T Consensus 720 ~s~GDlR~AIn~Lq~~~~~--~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~~~~~iL~~l~ 797 (846)
T PRK04132 720 IAEGDMRRAINILQAAAAL--DDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMH 797 (846)
T ss_pred HcCCCHHHHHHHHHHHHHh--cCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999988754 367999999999999988888888886 78999999999987 78999999999999
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 303 DIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 303 ~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
+.+... .+++..+.++++.++++++++..|.++.+||+.|++.++.
T Consensus 798 ~~l~~~-~i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~~ 843 (846)
T PRK04132 798 REVFNL-PIDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFTL 843 (846)
T ss_pred HHHHhc-CCCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHHh
Confidence 988654 5788999999999999999999999999999999999964
No 46
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.3e-35 Score=259.74 Aligned_cols=297 Identities=23% Similarity=0.299 Sum_probs=240.1
Q ss_pred CccccccCCCCCCcccccHHHH---HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVV---SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~---~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 109 (355)
.|++++.||+++++++||++.+ ..|.+.++.+..++++|||||||||||+|+.++... +..|..+++.. .+
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~-----~~~f~~~sAv~-~g 85 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT-----NAAFEALSAVT-SG 85 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh-----CCceEEecccc-cc
Confidence 6999999999999999999998 678999999999999999999999999999999998 45677888765 68
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEec--CCccccccccCC
Q psy17903 110 IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN--YVSCIIQPLTSR 187 (355)
Q Consensus 110 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~--~~~~l~~~l~sr 187 (355)
+.++++.++........+ .+.|+||||+|+++..+|+.|+..+|++ .+++|.+|+ ....+.++|+||
T Consensus 86 vkdlr~i~e~a~~~~~~g---------r~tiLflDEIHRfnK~QQD~lLp~vE~G--~iilIGATTENPsF~ln~ALlSR 154 (436)
T COG2256 86 VKDLREIIEEARKNRLLG---------RRTILFLDEIHRFNKAQQDALLPHVENG--TIILIGATTENPSFELNPALLSR 154 (436)
T ss_pred HHHHHHHHHHHHHHHhcC---------CceEEEEehhhhcChhhhhhhhhhhcCC--eEEEEeccCCCCCeeecHHHhhh
Confidence 888898888875554332 3469999999999999999999999954 566777664 345689999999
Q ss_pred eeeEEecCCCHHHHHHHHHHHHHH--cCCC-----CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhC-CCCCCHHHHHHH
Q psy17903 188 CSKFRFKPLAENTMLTRLQYICEQ--ESVM-----CDFKALETLVETSGGDMRRAITCLQSCARLKG-GEGIVNEDVLEV 259 (355)
Q Consensus 188 ~~~i~~~~~~~~~~~~~l~~~~~~--~~~~-----~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~-~~~It~~~v~~~ 259 (355)
|+++.|++++.+++...+++.+.. .++. +++++.+.++..++||.|.++|.|+.++..+. +..++.+.+.++
T Consensus 155 ~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~~~~~~~~l~~~ 234 (436)
T COG2256 155 ARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPDEVLILELLEEI 234 (436)
T ss_pred hheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCCcccCHHHHHHH
Confidence 999999999999999999995443 4444 78999999999999999999999999988773 334568888888
Q ss_pred hCCCCh----------HHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Q psy17903 260 TGVIPN----------PWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326 (355)
Q Consensus 260 ~~~~~~----------~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~ 326 (355)
+..... +.+..+.+. .|.+.+.-++..+++-|.+|..|...+........+.-+.+...+.....++
T Consensus 235 l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~AsEDIGlAdP~Al~~a~aa~da 314 (436)
T COG2256 235 LQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIASEDIGLADPNALQVAVAALDA 314 (436)
T ss_pred HhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhhccCCChhHHHHHHHHHHH
Confidence 865321 233344443 7899999999999999999999999999988886666665555444444444
Q ss_pred HHHhhCC-CChHHHHHHHHHHHH
Q psy17903 327 NARLQDG-ASEYIQILDLGSIVI 348 (355)
Q Consensus 327 ~~~l~~g-~~~~~~l~~~~~~~~ 348 (355)
-.++ | ..-++.|...+..++
T Consensus 315 ~~~l--G~PE~~i~LAqavvyLA 335 (436)
T COG2256 315 VERL--GSPEARIALAQAVVYLA 335 (436)
T ss_pred HHHh--CCchHHHHHHHHHHHHH
Confidence 4443 6 466788887777775
No 47
>PRK04195 replication factor C large subunit; Provisional
Probab=100.00 E-value=4.5e-34 Score=273.67 Aligned_cols=296 Identities=27% Similarity=0.371 Sum_probs=236.2
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhc---CC-CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG---AD-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~---~~-~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 108 (355)
.+|++||||++|++++|++.++..|..|+.. |. .+++||+||||+|||++|+++++++ ...++++|+++..
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el-----~~~~ielnasd~r 76 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY-----GWEVIELNASDQR 76 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEEcccccc
Confidence 5899999999999999999999999999864 33 3459999999999999999999998 4578899998877
Q ss_pred chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH----HHHHHHHHHhhhccCCccEEEEecCCccccc-c
Q psy17903 109 GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH----AAQAALRRTMEKETKSTRFCLICNYVSCIIQ-P 183 (355)
Q Consensus 109 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~----~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~-~ 183 (355)
..+.+...+.......... + .++++|||||+|.+.. ..++.|+++++. ....+|+++|+...+.+ +
T Consensus 77 ~~~~i~~~i~~~~~~~sl~----~---~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~ 147 (482)
T PRK04195 77 TADVIERVAGEAATSGSLF----G---ARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRE 147 (482)
T ss_pred cHHHHHHHHHHhhccCccc----C---CCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhh
Confidence 7777777666554332111 1 1457999999999976 567889999984 34567888988877665 8
Q ss_pred ccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCC
Q psy17903 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263 (355)
Q Consensus 184 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~ 263 (355)
++++|..+.|++|+..++..+++.++..+++.+++++++.|++.++||+|.+++.|+.++. +.+.|+.+++..+....
T Consensus 148 Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~--~~~~it~~~v~~~~~~d 225 (482)
T PRK04195 148 LRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAE--GYGKLTLEDVKTLGRRD 225 (482)
T ss_pred HhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhc--CCCCCcHHHHHHhhcCC
Confidence 9999999999999999999999999999999999999999999999999999999998443 45789999999888766
Q ss_pred ChHHHHHHHhc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCC-CChHH
Q psy17903 264 PNPWIEKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG-ASEYI 338 (355)
Q Consensus 264 ~~~~~~~l~~~----~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g-~~~~~ 338 (355)
....++++++. ++...+...+++ ...++..++..+.+.+... .-......++++.++..|..+..- ....+
T Consensus 226 ~~~~if~~l~~i~~~k~~~~a~~~~~~---~~~~~~~i~~~l~en~~~~-~~~~~~~~~a~~~ls~ad~~~~~~~~~~~~ 301 (482)
T PRK04195 226 REESIFDALDAVFKARNADQALEASYD---VDEDPDDLIEWIDENIPKE-YDDPEDIARAYDALSRADIFLGRVKRTQNY 301 (482)
T ss_pred CCCCHHHHHHHHHCCCCHHHHHHHHHc---ccCCHHHHHHHHHhccccc-cCCHHHHHHHHHHHhHHHHHHHHHHhcCCc
Confidence 66777887775 667777665554 4678899999988877652 123477788888888887776543 22236
Q ss_pred HHHHHHHHHH
Q psy17903 339 QILDLGSIVI 348 (355)
Q Consensus 339 ~l~~~~~~~~ 348 (355)
+|..+...+|
T Consensus 302 ~l~~~~~~~m 311 (482)
T PRK04195 302 DLWRYASDLM 311 (482)
T ss_pred chHHHHHHHh
Confidence 6766666653
No 48
>PRK13342 recombination factor protein RarA; Reviewed
Probab=100.00 E-value=3.8e-32 Score=255.72 Aligned_cols=294 Identities=23% Similarity=0.294 Sum_probs=232.8
Q ss_pred ccccccCCCCCCcccccHHHHHH---HHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccch
Q psy17903 34 PWVEKYRPKTIDDVIEQQEVVSV---LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (355)
Q Consensus 34 ~~~~k~~p~~~~~~vg~~~~~~~---l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 110 (355)
||++||||++|++++||++++.. |.+++.++..++++|+||||||||++|+.+++.+. ..++.+++.. .+.
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~-----~~~~~l~a~~-~~~ 74 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATD-----APFEALSAVT-SGV 74 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeccc-ccH
Confidence 79999999999999999999766 99999999888899999999999999999999873 4567777764 355
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecC--CccccccccCCe
Q psy17903 111 QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY--VSCIIQPLTSRC 188 (355)
Q Consensus 111 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~--~~~l~~~l~sr~ 188 (355)
..++..+......... ..+++|||||+|.++...++.|+..+++. .+++|.+++. ...+.+++++||
T Consensus 75 ~~ir~ii~~~~~~~~~---------g~~~vL~IDEi~~l~~~~q~~LL~~le~~--~iilI~att~n~~~~l~~aL~SR~ 143 (413)
T PRK13342 75 KDLREVIEEARQRRSA---------GRRTILFIDEIHRFNKAQQDALLPHVEDG--TITLIGATTENPSFEVNPALLSRA 143 (413)
T ss_pred HHHHHHHHHHHHhhhc---------CCceEEEEechhhhCHHHHHHHHHHhhcC--cEEEEEeCCCChhhhccHHHhccc
Confidence 6666666554332211 14469999999999999999999999863 4555555432 346889999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHc--CC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCC-
Q psy17903 189 SKFRFKPLAENTMLTRLQYICEQE--SV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP- 264 (355)
Q Consensus 189 ~~i~~~~~~~~~~~~~l~~~~~~~--~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~- 264 (355)
..+.|.+++.+++..++.+.+... ++ .+++++++.+++.++||+|.+++.++.++.. +..|+.+++.+++....
T Consensus 144 ~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~--~~~It~~~v~~~~~~~~~ 221 (413)
T PRK13342 144 QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG--VDSITLELLEEALQKRAA 221 (413)
T ss_pred eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc--cCCCCHHHHHHHHhhhhh
Confidence 999999999999999999988753 44 8999999999999999999999999998775 56799999998886421
Q ss_pred ---------hHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhC
Q psy17903 265 ---------NPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD 332 (355)
Q Consensus 265 ---------~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~ 332 (355)
.+.+..+.+. .|.+.+..++..++..|+++..|..++...+....++.+.....+...+..+-..+
T Consensus 222 ~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~edig~a~~~~~~~~~~~~~~~~~~-- 299 (413)
T PRK13342 222 RYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIASEDIGLADPNALQVAVAAADAVERI-- 299 (413)
T ss_pred ccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHh--
Confidence 1223334443 78899999999999999999999999999888766666666666655555555544
Q ss_pred C-CChHHHHHHHHHHHH
Q psy17903 333 G-ASEYIQILDLGSIVI 348 (355)
Q Consensus 333 g-~~~~~~l~~~~~~~~ 348 (355)
| ..-++.|...+..++
T Consensus 300 g~pe~~~~l~~~~~~l~ 316 (413)
T PRK13342 300 GMPEGRIALAQAVIYLA 316 (413)
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 6 355667766666654
No 49
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=100.00 E-value=6.4e-31 Score=258.71 Aligned_cols=284 Identities=19% Similarity=0.276 Sum_probs=222.1
Q ss_pred CCCCccccccCCCCCCcccccHHHH---HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCC
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVV---SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~---~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 106 (355)
..+.||.+||||++|++++||++++ ..|.+.+..++.++++||||||+|||++|+++++.+. ..++.+++..
T Consensus 13 ~~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~-----~~f~~lna~~ 87 (725)
T PRK13341 13 QSEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTR-----AHFSSLNAVL 87 (725)
T ss_pred cccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhc-----Ccceeehhhh
Confidence 3566999999999999999999998 4788899999999999999999999999999999873 3456667653
Q ss_pred ccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecC--Cccccccc
Q psy17903 107 DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY--VSCIIQPL 184 (355)
Q Consensus 107 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~--~~~l~~~l 184 (355)
.+...+++.+.......... ..+++|||||+|.++...|+.|+..+++. .+++|.+++. ...+.+++
T Consensus 88 -~~i~dir~~i~~a~~~l~~~--------~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g--~IiLI~aTTenp~~~l~~aL 156 (725)
T PRK13341 88 -AGVKDLRAEVDRAKERLERH--------GKRTILFIDEVHRFNKAQQDALLPWVENG--TITLIGATTENPYFEVNKAL 156 (725)
T ss_pred -hhhHHHHHHHHHHHHHhhhc--------CCceEEEEeChhhCCHHHHHHHHHHhcCc--eEEEEEecCCChHhhhhhHh
Confidence 34445555554432211100 13459999999999999999999999863 3455555533 34678999
Q ss_pred cCCeeeEEecCCCHHHHHHHHHHHHH-------HcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhC---C--CCCC
Q psy17903 185 TSRCSKFRFKPLAENTMLTRLQYICE-------QESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG---G--EGIV 252 (355)
Q Consensus 185 ~sr~~~i~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~---~--~~It 252 (355)
.|||..+.|++++.+++..++++.+. .+++.+++++++.|++.++||+|.+++.|+.++.... . ..||
T Consensus 157 ~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~~~~~~~~i~It 236 (725)
T PRK13341 157 VSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVESTPPDEDGLIDIT 236 (725)
T ss_pred hccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccCCCCceecc
Confidence 99999999999999999999999987 4578899999999999999999999999998765331 1 1378
Q ss_pred HHHHHHHhC----------CCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy17903 253 NEDVLEVTG----------VIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319 (355)
Q Consensus 253 ~~~v~~~~~----------~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i 319 (355)
.+.+.+++. ....+.+.++++. +|.+.+..++..+++.|+++..|+..|...+....++.+.....+
T Consensus 237 ~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~asEdigladp~al~~ 316 (725)
T PRK13341 237 LAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAASEDVGLADPQALVV 316 (725)
T ss_pred HHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCChHHHHH
Confidence 888877653 3455677878776 899999999999999999999999999999987656655555555
Q ss_pred HHHHHHHHHH
Q psy17903 320 LEKLAECNAR 329 (355)
Q Consensus 320 ~~~l~~~~~~ 329 (355)
......+...
T Consensus 317 ~~~~~~a~~~ 326 (725)
T PRK13341 317 VEACAAAFER 326 (725)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 50
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.2e-30 Score=237.35 Aligned_cols=289 Identities=17% Similarity=0.281 Sum_probs=206.3
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc---ccceeeecC--CCccchHHHHHH
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY---RERILELNA--SDDRGIQVIRDK 116 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~---~~~~~~~~~--~~~~~~~~i~~~ 116 (355)
+|++++||+.+++.|.+++..++.+| |||+||+|+||+++|+.+++.+.+... ..++.++.. ....+++.+++.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~ir~~ 81 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDDIRNI 81 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHHHHHH
Confidence 58999999999999999999999999 899999999999999999999977422 224444443 234567888888
Q ss_pred HHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeeeEEecCC
Q psy17903 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPL 196 (355)
Q Consensus 117 i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~ 196 (355)
+..+...+..+ ++||+|||++|.|+.+++++|+++||+|+.+++||++|++++++.++|+|||..++|.++
T Consensus 82 ~~~~~~~p~~~---------~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~ 152 (313)
T PRK05564 82 IEEVNKKPYEG---------DKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRL 152 (313)
T ss_pred HHHHhcCcccC---------CceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCc
Confidence 77665444332 678999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHh---CCCChHHHHHHHh
Q psy17903 197 AENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT---GVIPNPWIEKLLK 273 (355)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~---~~~~~~~~~~l~~ 273 (355)
+.+++..|+...+. .++++.++.++..++|+++.+...+....... -.+.+.+.+ .........++.+
T Consensus 153 ~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~l~~~~ 223 (313)
T PRK05564 153 SKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDSLKN-----IRNMSLEILKDIKKSNINILLKYEN 223 (313)
T ss_pred CHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccHHHH-----HHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999986543 57788899999999999998876653211100 001111111 1111111111111
Q ss_pred c-----CC----HHHHHHHHHHHHHc--CCCHHHHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHH
Q psy17903 274 V-----DS----FQVLEKYIEDLILE--AYSATQLF--DQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340 (355)
Q Consensus 274 ~-----~~----~~~~~~~l~~l~~~--g~~~~~i~--~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l 340 (355)
. .+ ..-+..++++++.. +.....++ .........+..++...+.++++.+.++++.++.+.|..+.+
T Consensus 224 ~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a~~~s~~~L~~~~~~l~~~~~~l~~n~n~~l~l 303 (313)
T PRK05564 224 FLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHISEKFSYKKLNKMIEIINDTRDNLSSNVNPTLVF 303 (313)
T ss_pred HHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHcCCccHHH
Confidence 1 11 12223334444311 11110000 001111112346889999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy17903 341 LDLGSIVIK 349 (355)
Q Consensus 341 ~~~~~~~~~ 349 (355)
|.++.++..
T Consensus 304 e~lll~~~~ 312 (313)
T PRK05564 304 DSMLIKMQE 312 (313)
T ss_pred HHHHHhhhc
Confidence 999998853
No 51
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.97 E-value=3.1e-30 Score=215.03 Aligned_cols=198 Identities=23% Similarity=0.305 Sum_probs=146.4
Q ss_pred CCCCCccccccCCCCCCcccccHHHHHHHHHHHh-----cCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeec
Q psy17903 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-----GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (355)
Q Consensus 29 ~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~-----~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 103 (355)
.....++.+++||++|++++||++++..+.-+++ +...+|++||||||+||||+|..+++++. .++...+
T Consensus 8 ~~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~-----~~~~~~s 82 (233)
T PF05496_consen 8 QEEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELG-----VNFKITS 82 (233)
T ss_dssp ----S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT-------EEEEE
T ss_pred CCcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccC-----CCeEecc
Confidence 3556889999999999999999999998876654 34567899999999999999999999984 3455666
Q ss_pred CCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc------------------
Q psy17903 104 ASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET------------------ 165 (355)
Q Consensus 104 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------ 165 (355)
++......++...+..+. ++.|+||||+|+|++..|+.|+..||++.
T Consensus 83 g~~i~k~~dl~~il~~l~---------------~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l 147 (233)
T PF05496_consen 83 GPAIEKAGDLAAILTNLK---------------EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINL 147 (233)
T ss_dssp CCC--SCHHHHHHHHT-----------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE-
T ss_pred chhhhhHHHHHHHHHhcC---------------CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccC
Confidence 654444455544443322 33499999999999999999999999743
Q ss_pred CCccEEEEecCCccccccccCCeeeE-EecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 166 KSTRFCLICNYVSCIIQPLTSRCSKF-RFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 166 ~~~~~Il~~~~~~~l~~~l~sr~~~i-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
+...+|.+|+....+.++|++|+..+ ++..++.+++..++.+.+...+++++++++..|+..|.|.+|-+.+.|+++-.
T Consensus 148 ~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rvrD 227 (233)
T PF05496_consen 148 PPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIANRLLRRVRD 227 (233)
T ss_dssp ---EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHHHHHHHHHCC
T ss_pred CCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 23567888889999999999999965 79999999999999999999999999999999999999999999999999876
Q ss_pred hh
Q psy17903 245 LK 246 (355)
Q Consensus 245 ~~ 246 (355)
|+
T Consensus 228 ~a 229 (233)
T PF05496_consen 228 FA 229 (233)
T ss_dssp CC
T ss_pred HH
Confidence 65
No 52
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=7.3e-29 Score=229.15 Aligned_cols=292 Identities=18% Similarity=0.275 Sum_probs=205.5
Q ss_pred CCCcccccHHHHHHHHHHHhcCC---------CCe-EEEECCCCCCHHHHHHHHHHHhcCCcc-----------------
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGAD---------LPH-FLFYGPPGTGKTSTMIAACHQLFGDMY----------------- 95 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~~---------~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~----------------- 95 (355)
.|++++||++++..|++++..++ .+| +||+||+|+|||++|+.+++.+.++..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 58999999999999999999876 778 999999999999999999999987531
Q ss_pred -ccceeeecCC-CccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEE
Q psy17903 96 -RERILELNAS-DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLI 173 (355)
Q Consensus 96 -~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~ 173 (355)
..++..+... ...+++.+++.+......+.. ++++|+||||+|.|+...++.|+++||+++.+++||++
T Consensus 83 ~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~---------~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~ 153 (394)
T PRK07940 83 THPDVRVVAPEGLSIGVDEVRELVTIAARRPST---------GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLC 153 (394)
T ss_pred CCCCEEEeccccccCCHHHHHHHHHHHHhCccc---------CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEE
Confidence 1122233222 235678888777666544322 26789999999999999999999999999999999999
Q ss_pred ecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH---------H
Q psy17903 174 CNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA---------R 244 (355)
Q Consensus 174 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~---------~ 244 (355)
|+++..+.++|+|||..+.|++|+.+++.+|+... . .++++.+..++..++|+++.++..++.-. .
T Consensus 154 a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~---~--~~~~~~a~~la~~s~G~~~~A~~l~~~~~~~~~r~~~~~ 228 (394)
T PRK07940 154 APSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR---D--GVDPETARRAARASQGHIGRARRLATDEEARARRAEVLN 228 (394)
T ss_pred ECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHh---c--CCCHHHHHHHHHHcCCCHHHHHHHhcChHHHHHHHHHHH
Confidence 99999999999999999999999999999999832 2 36788889999999999998876653211 0
Q ss_pred h----hCCC-CCC---------HHHHHHHhCCCChHHHHHHHhc------------------------------------
Q psy17903 245 L----KGGE-GIV---------NEDVLEVTGVIPNPWIEKLLKV------------------------------------ 274 (355)
Q Consensus 245 ~----~~~~-~It---------~~~v~~~~~~~~~~~~~~l~~~------------------------------------ 274 (355)
. .... .+. .+.+...++.........+...
T Consensus 229 ~l~~l~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (394)
T PRK07940 229 LALRLARVSDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGPAKALRGAAGALKDLEKRQKRRATRAS 308 (394)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHhhhchhhh
Confidence 0 0000 000 0011111111111111111110
Q ss_pred -----CCHHHHHHHHHHHHH--cCCCH----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHH
Q psy17903 275 -----DSFQVLEKYIEDLIL--EAYSA----TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDL 343 (355)
Q Consensus 275 -----~~~~~~~~~l~~l~~--~g~~~----~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~ 343 (355)
.-.+.+..+++|++. .|.+. .+....+.+. ...++...+.++++.+.++...+..+.|..+.+|.+
T Consensus 309 ~~~l~~~l~~l~~~~rDll~~~~g~~~~~~n~d~~~~l~~~---a~~~~~~~l~~~~~~~~~a~~~l~~n~n~~L~lE~l 385 (394)
T PRK07940 309 RDALDRALVDLAGLYRDVLVVQLGAEVGLINPDMADRLAEL---AARSTPEGLLRRIDAVLACRERLAGNVKPLLAVEAM 385 (394)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 011224455666542 22111 1122223332 225688889999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy17903 344 GSIVIKAN 351 (355)
Q Consensus 344 ~~~~~~~~ 351 (355)
+.++.+.+
T Consensus 386 ll~l~~~~ 393 (394)
T PRK07940 386 VAALRQAL 393 (394)
T ss_pred HHHHHHhc
Confidence 99997765
No 53
>KOG2028|consensus
Probab=99.97 E-value=2.5e-28 Score=213.35 Aligned_cols=301 Identities=20% Similarity=0.236 Sum_probs=232.6
Q ss_pred CccccccCCCCCCcccccHHHH---HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVV---SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~---~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 109 (355)
.|++|+.||+++++++||++.+ ..|+.++++++.|.++||||||||||++|+.++....... ..++++++.. ..
T Consensus 126 ~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvelSAt~-a~ 202 (554)
T KOG2028|consen 126 KPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVELSATN-AK 202 (554)
T ss_pred CChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEEeccc-cc
Confidence 5999999999999999999887 4688899999999999999999999999999998864443 4688888765 45
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEec--CCccccccccCC
Q psy17903 110 IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN--YVSCIIQPLTSR 187 (355)
Q Consensus 110 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~--~~~~l~~~l~sr 187 (355)
..+++..+++......... .+.|+||||+|+++..+|+.|+..+|++ .+.+|.+|+ ....+..+|.||
T Consensus 203 t~dvR~ife~aq~~~~l~k--------rkTilFiDEiHRFNksQQD~fLP~VE~G--~I~lIGATTENPSFqln~aLlSR 272 (554)
T KOG2028|consen 203 TNDVRDIFEQAQNEKSLTK--------RKTILFIDEIHRFNKSQQDTFLPHVENG--DITLIGATTENPSFQLNAALLSR 272 (554)
T ss_pred hHHHHHHHHHHHHHHhhhc--------ceeEEEeHHhhhhhhhhhhcccceeccC--ceEEEecccCCCccchhHHHHhc
Confidence 6667766665443322211 4569999999999999999999999964 456776664 345688999999
Q ss_pred eeeEEecCCCHHHHHHHHHHHHHH----c----C-----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh-------C
Q psy17903 188 CSKFRFKPLAENTMLTRLQYICEQ----E----S-----VMCDFKALETLVETSGGDMRRAITCLQSCARLK-------G 247 (355)
Q Consensus 188 ~~~i~~~~~~~~~~~~~l~~~~~~----~----~-----~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~-------~ 247 (355)
|.++.+.+++.+.+..+|.+...- + + +.+++.++++++..+.||.|.++|.|+...... .
T Consensus 273 C~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~~ 352 (554)
T KOG2028|consen 273 CRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQSS 352 (554)
T ss_pred cceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCcc
Confidence 999999999999999999884431 1 1 236778999999999999999999999874332 1
Q ss_pred CCCCCHHHHHHHhCCCC----------hHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHH
Q psy17903 248 GEGIVNEDVLEVTGVIP----------NPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDK 314 (355)
Q Consensus 248 ~~~It~~~v~~~~~~~~----------~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~ 314 (355)
...++.+|+.+.+.... -..|..+-+. +|.....-++..+++.|.+|.++...+.+......++.+.
T Consensus 353 ~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARRlvR~ASEDIGlaD~ 432 (554)
T KOG2028|consen 353 RVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARRLVRFASEDIGLADP 432 (554)
T ss_pred cceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHHHHHHhhcccCcCCc
Confidence 23689999998886542 2244444444 7888899999999999999999999999998875555544
Q ss_pred HHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Q psy17903 315 QKALILEKLAECNARLQDGA-SEYIQILDLGSIVI 348 (355)
Q Consensus 315 ~~~~i~~~l~~~~~~l~~g~-~~~~~l~~~~~~~~ 348 (355)
. .+-+..+-++....-|+ .-...|.-++..+.
T Consensus 433 S--~L~~Avaa~qav~~vGmPE~dviLAqC~v~lA 465 (554)
T KOG2028|consen 433 S--ALTQAVAAYQAVHFVGMPECDVILAQCVVYLA 465 (554)
T ss_pred h--hhHHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 3 33555666666666675 55566666666654
No 54
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=1.3e-27 Score=215.31 Aligned_cols=272 Identities=17% Similarity=0.253 Sum_probs=194.0
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc-------------ccceeeecCC---
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------RERILELNAS--- 105 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~-------------~~~~~~~~~~--- 105 (355)
.|++++||+.+++.|.+.+..++.+| +||+||+|+||+++|.++++.+.+... ..++..+.+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 48899999999999999999999988 999999999999999999999987431 1122222211
Q ss_pred --------------------CccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc
Q psy17903 106 --------------------DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET 165 (355)
Q Consensus 106 --------------------~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~ 165 (355)
....++.+++....+...+..+ ++||+|||++|.|+..++|+|+++||+|+
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~---------~~kVvII~~ae~m~~~aaNaLLK~LEEPp 152 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEA---------PRKVVVIEDAETMNEAAANALLKTLEEPG 152 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccC---------CceEEEEEchhhcCHHHHHHHHHHHhCCC
Confidence 1233566776655544433332 67899999999999999999999999999
Q ss_pred CCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q psy17903 166 KSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245 (355)
Q Consensus 166 ~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 245 (355)
+++||++|+++++++++|+|||..++|.+++.+++.+|+......++.. .....++..++|+++.+++.++....
T Consensus 153 -~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~~~- 227 (314)
T PRK07399 153 -NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQLQS- 227 (314)
T ss_pred -CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHHHH-
Confidence 8899999999999999999999999999999999999999875433222 22567888999999999998875332
Q ss_pred hCCCCCCHHHHHHHhCCCChHHHHHHHhcCCHHHHHHHHHHHH-HcCCCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy17903 246 KGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLI-LEAYSAT-QLFDQFHDIVMSASSLSDKQKALILEKL 323 (355)
Q Consensus 246 ~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~-~~g~~~~-~i~~~l~~~~~~~~~~~~~~~~~i~~~l 323 (355)
+..+.+..+.. .. .+...+..+-..+- ..+...+ .++..+..++.+. .....+++.+
T Consensus 228 -----~~~~~~~~~~~-~~----------~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~~~~~~~-----~~~~~~~~~l 286 (314)
T PRK07399 228 -----IPPELLQKLEQ-PP----------KSPLEALELAKDISEELDIEQQLWLIDYLQQHYWQK-----TKNRQLLKQL 286 (314)
T ss_pred -----HHHHHHHHHHh-cc----------cCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-----hcchHHHHHH
Confidence 11222222221 11 22233333322222 1121111 2222222233221 1246789999
Q ss_pred HHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 324 AECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 324 ~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
.++.+.+..+++.++.++.+..+++.
T Consensus 287 ~~a~~~l~~nvn~~lv~e~~~l~l~~ 312 (314)
T PRK07399 287 EKLRKQLLSYVQPRLAWEVTLLELSQ 312 (314)
T ss_pred HHHHHHHHHcCCcchhHHHHHHHHhc
Confidence 99999999999999999999999864
No 55
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=9e-27 Score=211.40 Aligned_cols=289 Identities=20% Similarity=0.221 Sum_probs=204.7
Q ss_pred ccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc-------------------ccceeeecCC---
Q psy17903 49 EQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------------RERILELNAS--- 105 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~~~~~--- 105 (355)
.+....+.|.+.+.+++.+| +||+||+|+||+++|.++++.+.+... ..++..+...
T Consensus 6 Wl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (334)
T PRK07993 6 WLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK 85 (334)
T ss_pred CChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc
Confidence 46677889999999999999 999999999999999999999986321 1234444332
Q ss_pred CccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCcccccccc
Q psy17903 106 DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185 (355)
Q Consensus 106 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~ 185 (355)
...+++.+++....+...+..+ ++||+|||++|.|+.++.|+|+++||+|+.+++||++|+++++++|+|+
T Consensus 86 ~~I~idqiR~l~~~~~~~~~~g---------~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIr 156 (334)
T PRK07993 86 SSLGVDAVREVTEKLYEHARLG---------GAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLR 156 (334)
T ss_pred ccCCHHHHHHHHHHHhhccccC---------CceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 2477899999888777665443 6789999999999999999999999999999999999999999999999
Q ss_pred CCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCCh
Q psy17903 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPN 265 (355)
Q Consensus 186 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~ 265 (355)
|||+.+.|++++.+++..|+... ..++++.+..++..++|+++.+++.++.-.... ...+ .+.+.........
T Consensus 157 SRCq~~~~~~~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~~~~~~~-r~~~-~~~l~~~~~~~~~ 229 (334)
T PRK07993 157 SRCRLHYLAPPPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQPERWQQ-REAL-CQALAYALPSGDW 229 (334)
T ss_pred hccccccCCCCCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhcCchHHH-HHHH-HHHHHHHhcCCCH
Confidence 99999999999999999999742 347777788889999999999988874211000 0000 0111111111111
Q ss_pred HHHHHHHhcCC----HHHHHHHHHHHHHcCCCHHHHH-HHHHH-HHHhcCCCCHHHHHHHHHHHHHHHHHhhC--CCChH
Q psy17903 266 PWIEKLLKVDS----FQVLEKYIEDLILEAYSATQLF-DQFHD-IVMSASSLSDKQKALILEKLAECNARLQD--GASEY 337 (355)
Q Consensus 266 ~~~~~l~~~~~----~~~~~~~l~~l~~~g~~~~~i~-~~l~~-~~~~~~~~~~~~~~~i~~~l~~~~~~l~~--g~~~~ 337 (355)
......++..+ .+-+..+++|++........++ ..... .......++...+..+++.+.++...+.. +.|..
T Consensus 230 ~~~~~~~~~~~~~~~L~~l~~~~rD~l~~~~~~~~~~n~d~~~~i~~~a~~~~~~~l~~~~~~l~~~~~~l~~~~N~N~~ 309 (334)
T PRK07993 230 LSLLPALNHEQAPARLHWLATLLMDALKRQHGAAYVTNQDQPPLVAQLANHLSPARLQAILGDVCHCREQLLSVTGVNRE 309 (334)
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHHHHHhcCCcceeCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 11112222112 2334455666543222111111 01111 01112257888888999999999999996 78999
Q ss_pred HHHHHHHHHHHHHHhh
Q psy17903 338 IQILDLGSIVIKANKT 353 (355)
Q Consensus 338 ~~l~~~~~~~~~~~~~ 353 (355)
+.++.++.++...++.
T Consensus 310 L~le~lll~~~~~~~~ 325 (334)
T PRK07993 310 LLLTDLLLRIEHYLQP 325 (334)
T ss_pred HHHHHHHHHHHHHHcc
Confidence 9999999999877653
No 56
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=2e-26 Score=210.28 Aligned_cols=194 Identities=23% Similarity=0.395 Sum_probs=161.5
Q ss_pred cccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc--------------------
Q psy17903 37 EKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------------- 95 (355)
Q Consensus 37 ~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~-------------------- 95 (355)
...+|..+++++||+++...|...+..++.+| +||+||+|+|||++|+.+++.+.+...
T Consensus 15 ~~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 15 GVPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred CCCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 34799999999999999999999999999999 999999999999999999999987210
Q ss_pred -----ccceeeecCC---------CccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHh
Q psy17903 96 -----RERILELNAS---------DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTM 161 (355)
Q Consensus 96 -----~~~~~~~~~~---------~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~l 161 (355)
..++..+... ...+++.++.....+...+.. ++++|+||||+|.|+..++++|++.|
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~---------g~~rVviIDeAd~l~~~aanaLLk~L 165 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGD---------GNWRIVIIDPADDMNRNAANAILKTL 165 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhcccc---------CCceEEEEEchhhcCHHHHHHHHHHH
Confidence 0012223211 123467777665555443322 26789999999999999999999999
Q ss_pred hhccCCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q psy17903 162 EKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241 (355)
Q Consensus 162 e~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 241 (355)
|+++.+++||++++.+.++.++++|||..++|++++.+++..|+...+...+ ++++++..+++.++|++|.+++.++.
T Consensus 166 EEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 166 EEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred hcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999998654333 77889999999999999999999863
No 57
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=1.1e-26 Score=211.68 Aligned_cols=288 Identities=21% Similarity=0.241 Sum_probs=199.8
Q ss_pred CCCcccc-cHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc-------------------ccceee
Q psy17903 43 TIDDVIE-QQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------------RERILE 101 (355)
Q Consensus 43 ~~~~~vg-~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~ 101 (355)
.|+.++| |+.+++.|.+.+..++.+| +||+||+|+||+++|+.+++.+.+... ..++..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 3778888 9999999999999999999 899999999999999999999986421 112222
Q ss_pred ecC-CCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccc
Q psy17903 102 LNA-SDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180 (355)
Q Consensus 102 ~~~-~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 180 (355)
+.. ....+++.+++.+..+...+..+ ++||+||||+|.|+.+++++|+++||+|+.+++||++|+++.++
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~~~---------~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVES---------NKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCccc---------CceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 222 22356788888887766554332 67899999999999999999999999999999999999999999
Q ss_pred cccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHh
Q psy17903 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260 (355)
Q Consensus 181 ~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~ 260 (355)
.++|+|||..++|.+++.+++..++.. +| ++++....++.. .|+++.++..++.-....... ....+.+.+
T Consensus 154 l~TIrSRc~~i~~~~~~~~~~~~~L~~----~g--i~~~~~~~l~~~-~g~~~~A~~l~~~~~~~~~~~--~~~~~~~~~ 224 (329)
T PRK08058 154 LPTILSRCQVVEFRPLPPESLIQRLQE----EG--ISESLATLLAGL-TNSVEEALALSEDDWFAQARA--LVIKLYEAL 224 (329)
T ss_pred cHHHHhhceeeeCCCCCHHHHHHHHHH----cC--CChHHHHHHHHH-cCCHHHHHHHhcCchHHHHHH--HHHHHHHHH
Confidence 999999999999999999999888863 34 566666666665 478999887765321100000 001111111
Q ss_pred CCCChHHHH----HHHhc-CC-------HHHHHHHHHHHHH--cCCCHHHHHHH-HHHHHHhcCCCCHHHHHHHHHHHHH
Q psy17903 261 GVIPNPWIE----KLLKV-DS-------FQVLEKYIEDLIL--EAYSATQLFDQ-FHDIVMSASSLSDKQKALILEKLAE 325 (355)
Q Consensus 261 ~~~~~~~~~----~l~~~-~~-------~~~~~~~l~~l~~--~g~~~~~i~~~-l~~~~~~~~~~~~~~~~~i~~~l~~ 325 (355)
......... .+... .+ .+-+..++++++. .|.....+... .......+..++...+..+++.+.+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~~~a~~~s~~~l~~~~~~~~~ 304 (329)
T PRK08058 225 HEKDLQSFVFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQQLALSYSQQQIVAALELILE 304 (329)
T ss_pred HcCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 111111111 11111 11 1223445555542 22211111111 1111112235789999999999999
Q ss_pred HHHHhhCCCChHHHHHHHHHHHH
Q psy17903 326 CNARLQDGASEYIQILDLGSIVI 348 (355)
Q Consensus 326 ~~~~l~~g~~~~~~l~~~~~~~~ 348 (355)
+...+..+.|..+.+|.++.++.
T Consensus 305 ~~~~l~~n~n~~L~le~lll~~~ 327 (329)
T PRK08058 305 AKRRLNSNVNFQLVMEQLVLRLQ 327 (329)
T ss_pred HHHHHHHcCCHHHHHHHHHHhcc
Confidence 99999999999999999999875
No 58
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=9.1e-26 Score=204.34 Aligned_cols=276 Identities=17% Similarity=0.203 Sum_probs=193.9
Q ss_pred HHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc-------------------ccceeeecCC---CccchHHHH
Q psy17903 58 KKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------------RERILELNAS---DDRGIQVIR 114 (355)
Q Consensus 58 ~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~~~~~---~~~~~~~i~ 114 (355)
.+++..++.+| +||+||+|+||+++|+.+++.+.+... ..++..+... ...+++.++
T Consensus 13 ~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR 92 (328)
T PRK05707 13 QQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVR 92 (328)
T ss_pred HHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHH
Confidence 44456688899 999999999999999999999987421 1234444332 346789999
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeeeEEec
Q psy17903 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194 (355)
Q Consensus 115 ~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 194 (355)
+.+..+...+..+ ++||+|||++|.|+.+++|+|+++||+|+.+++||++|+++..++++|+|||..+.|.
T Consensus 93 ~l~~~~~~~~~~~---------~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~ 163 (328)
T PRK05707 93 ELVSFVVQTAQLG---------GRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACP 163 (328)
T ss_pred HHHHHHhhccccC---------CCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCC
Confidence 9877766554332 6789999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHHHHhc
Q psy17903 195 PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274 (355)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~ 274 (355)
+++.+++..|+.... ...+++....++..++|++..++..++.-.... ..--.+.+..+.... .....+.+.
T Consensus 164 ~~~~~~~~~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~~~~~~~--r~~~~~~l~~~~~~~--~~~~~~~~~ 235 (328)
T PRK05707 164 LPSNEESLQWLQQAL----PESDERERIELLTLAGGSPLRALQLHEQGVREQ--RARVLDGVKKLLKQQ--QSASQLAES 235 (328)
T ss_pred CcCHHHHHHHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHCcchHHH--HHHHHHHHHHHhcCc--ccHHHHHHH
Confidence 999999999998653 134566677788899999999987764211000 000001111111111 011122211
Q ss_pred ---CCH----HHHHHHHHHHHH--cCCCH-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh--CCCChHH
Q psy17903 275 ---DSF----QVLEKYIEDLIL--EAYSA-----TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQ--DGASEYI 338 (355)
Q Consensus 275 ---~~~----~~~~~~l~~l~~--~g~~~-----~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~--~g~~~~~ 338 (355)
.+. .-+..+++|++. .|.+. .+....+... ...++...+..+++.+.++...+. .+.|..+
T Consensus 236 ~~k~~~~~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~---a~~~~~~~L~~~~~~l~~~~~~l~~~~NvN~~L 312 (328)
T PRK05707 236 WLKVPLLLLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYL---AQKSPQAKVLALQDWLLEQRQKVLGKANLNRQL 312 (328)
T ss_pred HccCCHHHHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHhhccCCCCHHH
Confidence 222 234445556543 22221 2222223322 235788889999999999999986 6789999
Q ss_pred HHHHHHHHHHHHHhh
Q psy17903 339 QILDLGSIVIKANKT 353 (355)
Q Consensus 339 ~l~~~~~~~~~~~~~ 353 (355)
.+|.++.++...+++
T Consensus 313 ~le~lll~~~~~~~~ 327 (328)
T PRK05707 313 LLEALLVQWAGLPGA 327 (328)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999877665
No 59
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=8.4e-26 Score=207.26 Aligned_cols=189 Identities=22% Similarity=0.343 Sum_probs=156.9
Q ss_pred cCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccc---------------------
Q psy17903 39 YRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR--------------------- 96 (355)
Q Consensus 39 ~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~--------------------- 96 (355)
.+|+++++++||+.++..|.+.+..++.+| +||+||+|+||+++|.++++.+.++...
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 799999999999999999999999999999 9999999999999999999999864310
Q ss_pred --------cceeeecC--C-------CccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHH
Q psy17903 97 --------ERILELNA--S-------DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRR 159 (355)
Q Consensus 97 --------~~~~~~~~--~-------~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~ 159 (355)
.++..+.. . ....++.+++....+...+.. ++++|+||||+|.++...++.|++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~---------~~~kVviIDead~m~~~aanaLLK 163 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAE---------GGWRVVIVDTADEMNANAANALLK 163 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCccc---------CCCEEEEEechHhcCHHHHHHHHH
Confidence 12222321 0 224567777766555433222 256799999999999999999999
Q ss_pred HhhhccCCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q psy17903 160 TMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239 (355)
Q Consensus 160 ~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 239 (355)
.+|+++.+++||++|+++..+.++++|||..+.|.+++.+++.+|+.... ...+++.+..++..++|+++.+++.+
T Consensus 164 ~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~----~~~~~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 164 VLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG----PDLPDDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred HHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc----ccCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999998642 33455666788999999999999988
Q ss_pred H
Q psy17903 240 Q 240 (355)
Q Consensus 240 ~ 240 (355)
+
T Consensus 240 ~ 240 (365)
T PRK07471 240 G 240 (365)
T ss_pred c
Confidence 5
No 60
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=3.2e-25 Score=198.90 Aligned_cols=275 Identities=18% Similarity=0.201 Sum_probs=192.0
Q ss_pred ccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc----------------ccceeee--cCC----
Q psy17903 49 EQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY----------------RERILEL--NAS---- 105 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~----------------~~~~~~~--~~~---- 105 (355)
.+..+.+.|.+.+..++.+| +||+||+|+||+++|.++++.+.+... ..++..+ ...
T Consensus 8 W~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~ 87 (319)
T PRK08769 8 WQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGD 87 (319)
T ss_pred cHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccc
Confidence 56788899999999999999 999999999999999999999987431 1123333 221
Q ss_pred ---CccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccc
Q psy17903 106 ---DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182 (355)
Q Consensus 106 ---~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 182 (355)
...+++.+++........+..+ ++||+|||++|.|+..+.|+|+++||+|+.+++||++++++++++|
T Consensus 88 k~~~~I~idqIR~l~~~~~~~p~~g---------~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLp 158 (319)
T PRK08769 88 KLRTEIVIEQVREISQKLALTPQYG---------IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPA 158 (319)
T ss_pred cccccccHHHHHHHHHHHhhCcccC---------CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCch
Confidence 1245777887776665544332 6789999999999999999999999999999999999999999999
Q ss_pred cccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCC
Q psy17903 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGV 262 (355)
Q Consensus 183 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~ 262 (355)
+|+|||..+.|.+|+.+++..||.. . .++++.+..++..++|++..+...++.-.... ...+ .+.+..+...
T Consensus 159 TIrSRCq~i~~~~~~~~~~~~~L~~----~--~~~~~~a~~~~~l~~G~p~~A~~~~~~~~~~~-r~~~-~~~l~~~~~~ 230 (319)
T PRK08769 159 TIRSRCQRLEFKLPPAHEALAWLLA----Q--GVSERAAQEALDAARGHPGLAAQWLREDGLAL-RRAV-AQDLEQIASG 230 (319)
T ss_pred HHHhhheEeeCCCcCHHHHHHHHHH----c--CCChHHHHHHHHHcCCCHHHHHHHhcCchHHH-HHHH-HHHHHHhccC
Confidence 9999999999999999999999974 2 35566666778899999999988774211000 0000 1112211111
Q ss_pred CChHHHHHHHhc----CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHH
Q psy17903 263 IPNPWIEKLLKV----DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYI 338 (355)
Q Consensus 263 ~~~~~~~~l~~~----~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~ 338 (355)
. ....++.+. ...+....+++|++..... ...+ .. + ....+.+....+.+....+.+|.|.++
T Consensus 231 ~--~~~~~~a~~~~~~~~~~~l~~~~~Dll~~~~~-~~~~--------~~-~-~~~~L~~~~~~l~~~~~~~~~~lN~~L 297 (319)
T PRK08769 231 R--AGAVDVAQRWTNDGQADQRLRHAADLALAQAS-AGLT--------DP-S-RLHKLATWFDAANRTRDLLRTTVRADL 297 (319)
T ss_pred c--ccHHHHHHHHccCCcHHHHHHHHHHHHHHhcC-Cccc--------Ch-h-hHHHHHHHHHHHHHHHHhccCCCCHHH
Confidence 1 112222221 2234555566665532111 0000 00 0 244455566667777777888999999
Q ss_pred HHHHHHHHHHHHHhh
Q psy17903 339 QILDLGSIVIKANKT 353 (355)
Q Consensus 339 ~l~~~~~~~~~~~~~ 353 (355)
.+|.++..+...+.+
T Consensus 298 ~le~lll~~~~~~~~ 312 (319)
T PRK08769 298 AVTELLLAWREGERQ 312 (319)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999776543
No 61
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=1.5e-24 Score=194.84 Aligned_cols=283 Identities=17% Similarity=0.189 Sum_probs=198.0
Q ss_pred ccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc-------------------ccceeeecC--CC
Q psy17903 49 EQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------------RERILELNA--SD 106 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~~~~--~~ 106 (355)
.+....+.|.+.+..++.+| +||+||+|+||+++|+.+++.+.+... ..++..+.. ..
T Consensus 6 W~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~ 85 (325)
T PRK06871 6 WLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNK 85 (325)
T ss_pred chHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCC
Confidence 46677888999999999999 999999999999999999999987321 123444433 23
Q ss_pred ccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccC
Q psy17903 107 DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186 (355)
Q Consensus 107 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 186 (355)
..+++.+|+........+..+ ++||+|||++|.|+..++|+|+++||+|+.+++||++|+++.+++|+|+|
T Consensus 86 ~I~id~iR~l~~~~~~~~~~g---------~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S 156 (325)
T PRK06871 86 DIGVDQVREINEKVSQHAQQG---------GNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS 156 (325)
T ss_pred CCCHHHHHHHHHHHhhccccC---------CceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh
Confidence 467899998877766555433 67899999999999999999999999999999999999999999999999
Q ss_pred CeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChH
Q psy17903 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266 (355)
Q Consensus 187 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~ 266 (355)
||..+.|.+++.+++.+||.... ..+...+..++..++|++..++..++.-.... ...+ .+.+..........
T Consensus 157 RC~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~~~-r~~~-~~~l~~~~~~~~~~ 229 (325)
T PRK06871 157 RCQTWLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLLEQ-RKTF-LRQFWLFYRRRSPL 229 (325)
T ss_pred hceEEeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChHHH-HHHH-HHHHHHHhccCCHH
Confidence 99999999999999999998653 23444566677889999998887764311100 0000 00000001111111
Q ss_pred HHHHHHhcCC----HHHHHHHHHHHHH--cCCCH----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCC--C
Q psy17903 267 WIEKLLKVDS----FQVLEKYIEDLIL--EAYSA----TQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG--A 334 (355)
Q Consensus 267 ~~~~l~~~~~----~~~~~~~l~~l~~--~g~~~----~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g--~ 334 (355)
.....++..+ ..-+..+++|++. .|.+. .+....+... +.+++...+.++++.+.++..++..+ .
T Consensus 230 ~~~~~~~k~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~---a~~~s~~~L~~~i~~i~~~r~~L~~~~~i 306 (325)
T PRK06871 230 ELLPLFDKELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQF---SQQQSAQGLLKAHQIIQKVRSDLLQINAV 306 (325)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHH---HHhCCHHHHHHHHHHHHHHHHHHHccccc
Confidence 1111111111 2334556666643 23221 1222222222 23688999999999999999999665 6
Q ss_pred ChHHHHHHHHHHHHHH
Q psy17903 335 SEYIQILDLGSIVIKA 350 (355)
Q Consensus 335 ~~~~~l~~~~~~~~~~ 350 (355)
|..+.++..+..+.-+
T Consensus 307 N~~L~l~~~l~~~~~~ 322 (325)
T PRK06871 307 NQELILLDGLTRLVTE 322 (325)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8899999988887543
No 62
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.95 E-value=1.2e-25 Score=205.78 Aligned_cols=213 Identities=19% Similarity=0.203 Sum_probs=169.3
Q ss_pred CCCCccccccCCCCCCcccccHHHHHHHHHHHhc-----CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 104 (355)
....+|..+|||.+|++++|+++.++.+..++.. ...++++|+||||+|||++|+++++.+.. .+...++
T Consensus 10 ~~~~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~-----~~~~~~~ 84 (328)
T PRK00080 10 EEEDEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGV-----NIRITSG 84 (328)
T ss_pred cccchhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCC-----CeEEEec
Confidence 4447788899999999999999999999877752 33456999999999999999999999843 2333333
Q ss_pred CCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc------------------C
Q psy17903 105 SDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET------------------K 166 (355)
Q Consensus 105 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------~ 166 (355)
........+...+.... ...+|||||+|.++...++.|+..+++.. +
T Consensus 85 ~~~~~~~~l~~~l~~l~---------------~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~ 149 (328)
T PRK00080 85 PALEKPGDLAAILTNLE---------------EGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLP 149 (328)
T ss_pred ccccChHHHHHHHHhcc---------------cCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCC
Confidence 32222233333222211 23499999999999888888888887542 2
Q ss_pred CccEEEEecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q psy17903 167 STRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245 (355)
Q Consensus 167 ~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 245 (355)
..++|++|+....+.+++++||. .+.|.+++.+++.++++..+...++.++++++..|++.++|++|.+.+.++.+..+
T Consensus 150 ~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~~ 229 (328)
T PRK00080 150 PFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRLLRRVRDF 229 (328)
T ss_pred CceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence 35678888888888899999985 78999999999999999999999999999999999999999999999999987765
Q ss_pred h---CCCCCCHHHHHHHhCC
Q psy17903 246 K---GGEGIVNEDVLEVTGV 262 (355)
Q Consensus 246 ~---~~~~It~~~v~~~~~~ 262 (355)
+ +.+.|+.+.+..++..
T Consensus 230 a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 230 AQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HHHcCCCCCCHHHHHHHHHH
Confidence 5 3568999999987743
No 63
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.94 E-value=2.4e-24 Score=194.85 Aligned_cols=273 Identities=17% Similarity=0.153 Sum_probs=187.0
Q ss_pred cHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccc--------------------cceeeecCC---
Q psy17903 50 QQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR--------------------ERILELNAS--- 105 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~--------------------~~~~~~~~~--- 105 (355)
+....+.|... .++.+| +||+||+|+||+++|+.+++.+.+.... .++..+...
T Consensus 6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~ 83 (342)
T PRK06964 6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALA 83 (342)
T ss_pred cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc
Confidence 44556666664 568888 9999999999999999999999874311 122333211
Q ss_pred --------------------------CccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHH
Q psy17903 106 --------------------------DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRR 159 (355)
Q Consensus 106 --------------------------~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~ 159 (355)
...+++.+++........+.. +++||+|||++|.|+.++.|+|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~---------~~~kV~iI~~ae~m~~~AaNaLLK 154 (342)
T PRK06964 84 AEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHR---------GGARVVVLYPAEALNVAAANALLK 154 (342)
T ss_pred ccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCcc---------CCceEEEEechhhcCHHHHHHHHH
Confidence 235667888776655433322 267899999999999999999999
Q ss_pred HhhhccCCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q psy17903 160 TMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239 (355)
Q Consensus 160 ~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 239 (355)
+||+|+.+++||++|+++++++|+|+|||..+.|++|+.+++..|+... + +++. +.++..++|++..++..+
T Consensus 155 tLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~--~~~~--~~~l~~~~Gsp~~Al~~~ 226 (342)
T PRK06964 155 TLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----G--VADA--DALLAEAGGAPLAALALA 226 (342)
T ss_pred HhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----C--CChH--HHHHHHcCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999853 3 3332 335667899999998776
Q ss_pred HHHHHhhCCCCCCHHHHHHHhCCCChHHHHHHHhc---CC----HHHHHHHHHHHHH--cCCCHH---HHHHHHHHHHHh
Q psy17903 240 QSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DS----FQVLEKYIEDLIL--EAYSAT---QLFDQFHDIVMS 307 (355)
Q Consensus 240 ~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~----~~~~~~~l~~l~~--~g~~~~---~i~~~l~~~~~~ 307 (355)
+.-. .-..+.+.+.+.........++.+. .+ .+-+..+++|++. .|.... +....+.. .
T Consensus 227 ~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~~k~~~~~~l~~l~~~lrD~l~~~~~~~~~~~~d~~~~l~~---~ 297 (342)
T PRK06964 227 SDEN------RPLRDWTLGQLAAGAACDAFACAETLQKLPVPAVLGWLQRWLYDLLAQRLAGAPRYFPAQRAALAR---C 297 (342)
T ss_pred CCCh------HHHHHHHHHHHhccCchhHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHcCCCceecHhHHHHHHH---H
Confidence 3210 0001111111111111111222111 12 2334556666643 232211 11122222 2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q psy17903 308 ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350 (355)
Q Consensus 308 ~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~~ 350 (355)
...++...+..+++.+.++...+..+.|..+.+|.++.++...
T Consensus 298 a~~~~~~~L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~~~ 340 (342)
T PRK06964 298 AAAVDANALARFAKAVTRQRAVENHPLAARLVFEELFLGYREL 340 (342)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHHHH
Confidence 2367899999999999999999999999999999999998654
No 64
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.94 E-value=6.8e-25 Score=201.34 Aligned_cols=286 Identities=34% Similarity=0.472 Sum_probs=209.9
Q ss_pred CcccccHHHHHHHHHHHh-cCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc-------------------cccceeeec
Q psy17903 45 DDVIEQQEVVSVLKKCLS-GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM-------------------YRERILELN 103 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~-~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~-------------------~~~~~~~~~ 103 (355)
++++++..+...+..++. .++.+| +||+||||+|||++|.++++.+.+.. ...++++++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 367888888888888877 678899 99999999999999999999998754 346899999
Q ss_pred CCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCcccccc
Q psy17903 104 ASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183 (355)
Q Consensus 104 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 183 (355)
+++....+...+.++.+......... .+++++|||||+|.|+.+++++|++.+|+++.+++||++||++.++.++
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~-----~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPL-----EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCC-----CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccch
Confidence 99987765555555555443322111 1267899999999999999999999999999999999999999999999
Q ss_pred ccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCC
Q psy17903 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI 263 (355)
Q Consensus 184 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~ 263 (355)
|+|||..+.|++++......+.. ++++..++..+.||+|.+++.++.++.. ......+.+.....
T Consensus 156 I~SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~----~~~~~~~~~~~~~~ 220 (325)
T COG0470 156 IRSRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL----EIGEESIYEALLLA 220 (325)
T ss_pred hhhcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh----cccHHHHHHHHHhh
Confidence 99999999999855544444333 6678888889999999999999988875 34444444444333
Q ss_pred ChH-----HHHHHHhc-C-CHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHHHHhhCC
Q psy17903 264 PNP-----WIEKLLKV-D-SFQVLEKYIED-LILEAYSATQLFDQFHDIVMSAS--SLSDKQKALILEKLAECNARLQDG 333 (355)
Q Consensus 264 ~~~-----~~~~l~~~-~-~~~~~~~~l~~-l~~~g~~~~~i~~~l~~~~~~~~--~~~~~~~~~i~~~l~~~~~~l~~g 333 (355)
... ...+++.. . +...+...... +...+.........+........ ..........+..+...+.++..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (325)
T COG0470 221 LPESLAQLAALELLKLAENKFLEALEKLWLLLLLEGLLGEDLLDQLQRELLKLDKALIQEEKAAELLDALAQARRRLLDG 300 (325)
T ss_pred ChhhcccccHHHHHHHHHhcchhHHHHHHHHHHHcCcchhHHHHHHHHHHhhchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 332 33333333 1 33333333333 33455655555555555544321 134555566788999999999999
Q ss_pred CChHHHHHHHHHHHHHH
Q psy17903 334 ASEYIQILDLGSIVIKA 350 (355)
Q Consensus 334 ~~~~~~l~~~~~~~~~~ 350 (355)
..+.+++..++..++..
T Consensus 301 ~~~~~~~~~~~~~~~~~ 317 (325)
T COG0470 301 LLALIQLENLLAELLLL 317 (325)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999988887654
No 65
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.93 E-value=2.8e-25 Score=214.10 Aligned_cols=231 Identities=24% Similarity=0.365 Sum_probs=174.2
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCC---cc--ccceeeecCCC
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD---MY--RERILELNASD 106 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~---~~--~~~~~~~~~~~ 106 (355)
..||.+||||.+|++++|++..+..+...+......|++|+||+|||||++|+++++..... .+ +..++++|+..
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 56999999999999999999999999988877777789999999999999999998765321 11 35788888864
Q ss_pred cc-chHHHHH-HHHH-----HHHhhccCC------CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc---------
Q psy17903 107 DR-GIQVIRD-KVKT-----FAQQTASGF------NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE--------- 164 (355)
Q Consensus 107 ~~-~~~~i~~-~i~~-----~~~~~~~~~------~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~--------- 164 (355)
.. ....+.+ .+.. +......+. ....-..+++++|||||++.|++..|+.|++.||+.
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~ 211 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYY 211 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccc
Confidence 21 1111110 0000 000000000 000001145679999999999999999999999763
Q ss_pred -------------------cCCccEEEEec-CCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q psy17903 165 -------------------TKSTRFCLICN-YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETL 224 (355)
Q Consensus 165 -------------------~~~~~~Il~~~-~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 224 (355)
+.++++|++|+ ++..+.+++++||..+.|++++.+++..+++..+++.++.+++++++.+
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I 291 (531)
T TIGR02902 212 NSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELI 291 (531)
T ss_pred cccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 12346666654 6788999999999999999999999999999999999999999999988
Q ss_pred HHHcCCCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCC
Q psy17903 225 VETSGGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVI 263 (355)
Q Consensus 225 ~~~~~g~~r~~~~~l~~~~~~~---~~~~It~~~v~~~~~~~ 263 (355)
..++. |.|.+.|.++.++.++ +...|+.+++.+++...
T Consensus 292 ~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 292 VKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 87664 9999999999987655 33469999999998744
No 66
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=5.5e-23 Score=184.27 Aligned_cols=279 Identities=13% Similarity=0.142 Sum_probs=191.4
Q ss_pred ccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc------------------ccceeeecCC---C
Q psy17903 49 EQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY------------------RERILELNAS---D 106 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~------------------~~~~~~~~~~---~ 106 (355)
.+....+.|.+.+..++.+| +||+||.|+||+++|+.+++.+.+... ..++..+... .
T Consensus 7 Wl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (319)
T PRK06090 7 WLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGK 86 (319)
T ss_pred cHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCC
Confidence 45677889999999999999 999999999999999999999986321 1234445432 2
Q ss_pred ccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccC
Q psy17903 107 DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186 (355)
Q Consensus 107 ~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 186 (355)
..+++.+++........+.. +++||+|||++|.|+..+.|+|+++||+|+.+++||++|+++++++|+|+|
T Consensus 87 ~I~vdqiR~l~~~~~~~~~~---------~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 87 SITVEQIRQCNRLAQESSQL---------NGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred cCCHHHHHHHHHHHhhCccc---------CCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 46778888766554443322 267899999999999999999999999999999999999999999999999
Q ss_pred CeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChH
Q psy17903 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNP 266 (355)
Q Consensus 187 r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~ 266 (355)
||..+.|.+|+.+++.+|+.. .++. ....++..++|++..+...++.-.... ..--.+.+.+.+.... .
T Consensus 158 RCq~~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~~~~~~~--~~~~~~~l~~~l~~~~-~ 226 (319)
T PRK06090 158 RCQQWVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMKEGGLEK--YHKLERQLVDALSGPV-S 226 (319)
T ss_pred cceeEeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhCCCcHHH--HHHHHHHHHHHHhcCc-c
Confidence 999999999999999999974 3433 234567889999999988764110000 0000112222222211 1
Q ss_pred HHHHHHhc--C-C---HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCC--CCh
Q psy17903 267 WIEKLLKV--D-S---FQVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG--ASE 336 (355)
Q Consensus 267 ~~~~l~~~--~-~---~~~~~~~l~~l~~--~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g--~~~ 336 (355)
....+... + + .+-+..++.|++. .|....+....+... ..++...+...++.+.++...+..+ .|.
T Consensus 227 ~~~~~a~~~~~~~~~~l~~L~~ll~Dll~~~~g~~~~~~~~~~~~l----~~~~~~~l~~~~~~l~~~~~~L~~~~~ln~ 302 (319)
T PRK06090 227 DQLKCASLIAADPLTHLSWLWLLLTDAQKVHFGVQNEYYLPGSAAL----GPFTYSGLYVSTAKLERLKEQLQQFSGLNT 302 (319)
T ss_pred cHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhCCcchhhhHHHHHH----HhhCHHHHHHHHHHHHHHHHHHHhccccCH
Confidence 11222211 1 1 1123334555542 232222222222221 1346777777889999999999855 588
Q ss_pred HHHHHHHHHHHHHHH
Q psy17903 337 YIQILDLGSIVIKAN 351 (355)
Q Consensus 337 ~~~l~~~~~~~~~~~ 351 (355)
.+.++.++..+..++
T Consensus 303 elll~~lll~~~~~~ 317 (319)
T PRK06090 303 ELLIMNWLIESREEL 317 (319)
T ss_pred HHHHHHHHHHHHHHh
Confidence 899999999887664
No 67
>PRK05907 hypothetical protein; Provisional
Probab=99.93 E-value=4.3e-23 Score=185.19 Aligned_cols=273 Identities=9% Similarity=0.040 Sum_probs=218.9
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCC
Q psy17903 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133 (355)
Q Consensus 54 ~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 133 (355)
...+.+.+++|. |.|++||..- ....+.+.+.+..+.. ..+++.+. ..+. .+......+.++
T Consensus 7 ~~~~~~~~~~~~-~~y~~~g~~~---~~~~~~l~~~~~~~~~----~~fdg~~~-~~~~---ii~~aetlPfFa------ 68 (311)
T PRK05907 7 FKDFSQYYEEKR-PAVIVIGSSS---EEDKDIFIELLVSGRK----SEFDGQGL-LQQE---LLSWTEHFGLFA------ 68 (311)
T ss_pred HHHHHHHHhcCC-ceEEEecCCc---HHHHHHHHHHhCCCcc----ceecCCCC-CHHH---HHHHHhcCCccc------
Confidence 345566688888 8899999987 5566777666543221 23455442 3333 344444444443
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE-EEecCCc---cccccccCCeeeE----EecCCCHHHHHHHH
Q psy17903 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC-LICNYVS---CIIQPLTSRCSKF----RFKPLAENTMLTRL 205 (355)
Q Consensus 134 ~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I-l~~~~~~---~l~~~l~sr~~~i----~~~~~~~~~~~~~l 205 (355)
++|+|++.+.+.+.....+.|..+++++++.+++| ++.+ .+ ++.+.+.. +..+ .|.++.+.++..|+
T Consensus 69 ---erRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~~-~d~~kkl~K~i~k-~~~v~~~~e~~~l~e~~L~~Wi 143 (311)
T PRK05907 69 ---SQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTTK-QECFSSLSKKLSS-ALCLSLFGEWFADRDKRIAQLL 143 (311)
T ss_pred ---CeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEec-ccHHHHHHHHHhh-cceeccccccCCCCHHHHHHHH
Confidence 78899999888777667889999999999875555 5542 22 23444543 4444 89999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhh-CCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHH
Q psy17903 206 QYICEQESVMCDFKALETLVETS-GGDMRRAITCLQSCARLK-GGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVL 280 (355)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~-~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~ 280 (355)
..++++.|+.+++++++.++..+ ++|+..+.+++++++.|. +++.||.++|++++....+.++|+++++ ++..++
T Consensus 144 ~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L~dai~~~~~~~A 223 (311)
T PRK05907 144 IQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKLRDALLRRDRVEG 223 (311)
T ss_pred HHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHHHHHHHccCHHHH
Confidence 99999999999999999999999 699999999999999996 4678999999999999999999999999 999999
Q ss_pred HHHHHHHHHc-CCCHHHHHHHHHHHHHh-------c-----CC----CCHHHHHHHHHHHHHHHHHhhCC-CChHHHHHH
Q psy17903 281 EKYIEDLILE-AYSATQLFDQFHDIVMS-------A-----SS----LSDKQKALILEKLAECNARLQDG-ASEYIQILD 342 (355)
Q Consensus 281 ~~~l~~l~~~-g~~~~~i~~~l~~~~~~-------~-----~~----~~~~~~~~i~~~l~~~~~~l~~g-~~~~~~l~~ 342 (355)
.+++++|... |.+|..|+..+.+++.. . .. |+...+.+++..|.++|+.+|+| .++.+.||.
T Consensus 224 l~il~~Ll~~~ge~p~~ILall~rQfl~~~k~l~~~g~~~~~p~~vafs~~~L~~~~~~l~~~D~~iKtg~~d~~~~lEl 303 (311)
T PRK05907 224 HSLLRSLLSDMGEDPLGIIAFLRSQCLYGLRSIEEQSKERKHRIFVAYGKERLLQALNLLFYAESLIKNNVQDPILAVET 303 (311)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEECHHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 9999999999 99999999999987731 0 12 67899999999999999999999 699999999
Q ss_pred HHHHHHH
Q psy17903 343 LGSIVIK 349 (355)
Q Consensus 343 ~~~~~~~ 349 (355)
|+.++|.
T Consensus 304 li~~~~~ 310 (311)
T PRK05907 304 LVIRMTN 310 (311)
T ss_pred HHHHHhc
Confidence 9999874
No 68
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=3.1e-23 Score=182.24 Aligned_cols=255 Identities=15% Similarity=0.161 Sum_probs=183.6
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCc-----------cccceeeecCCC---ccchHHHHHH
Q psy17903 52 EVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDM-----------YRERILELNASD---DRGIQVIRDK 116 (355)
Q Consensus 52 ~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~-----------~~~~~~~~~~~~---~~~~~~i~~~ 116 (355)
...+.|.+.++.++.+| +||+||+|+||+.+|.++++.+.+.. ...++..+.+.. ..+++.+++.
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l 83 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAI 83 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHH
Confidence 45678999999999999 99999999999999999999998732 123344443322 2578889888
Q ss_pred HHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeeeEEecCC
Q psy17903 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPL 196 (355)
Q Consensus 117 i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~ 196 (355)
...+...+..+ ++||+|||++|.|+.+++|+|+++||+|+.+++||++|+++++++|+++|||..+.|+++
T Consensus 84 ~~~~~~~p~e~---------~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~ 154 (290)
T PRK05917 84 KKQIWIHPYES---------PYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME 154 (290)
T ss_pred HHHHhhCccCC---------CceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence 77776655433 678999999999999999999999999999999999999999999999999999999886
Q ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH--HHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHHHHhc
Q psy17903 197 AENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR--RAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV 274 (355)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r--~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~ 274 (355)
+...++++.+..++..++|+++ .+...++. . .+...... .+.+..++
T Consensus 155 ---------------~~~~i~~~~~~~l~~~~~g~~~~~~~~~~l~~------~----~~~~~~~~----re~~~~~L-- 203 (290)
T PRK05917 155 ---------------EKTLVSKEDIAYLIGYAQGKESVTEVGQIVKG------S----ADTDKQVL----RDKTKAML-- 203 (290)
T ss_pred ---------------hccCCCHHHHHHHHHHhCCChhHHHHHHHHhc------c----hHHHHHHH----HHHHHHHH--
Confidence 1124788888999999999996 22222221 0 01111111 22222222
Q ss_pred CCHHHHHHHHHHHHH--cCCCHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHH
Q psy17903 275 DSFQVLEKYIEDLIL--EAYSAT-QLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351 (355)
Q Consensus 275 ~~~~~~~~~l~~l~~--~g~~~~-~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~~~ 351 (355)
+-+..+++|++. .|.+.. .+...+...+.. ++......+++.+.++.+.+..++|..+.++.++.++.+.+
T Consensus 204 ---~~ll~~~RD~l~~~~~~~~~~l~~~d~~~~l~~---~~~~~l~~~i~~i~~a~~~l~~N~N~~l~le~l~l~l~~~~ 277 (290)
T PRK05917 204 ---EVLLQLFRDRFLLALKVPASALAYPDLLKEILT---LPVLPLEKVLSIIERAVQALDNSSSAPSCLEWVALQLWSLK 277 (290)
T ss_pred ---HHHHHHHHHHHHHHcCCchhhhccHHHHHHHHh---cccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 334555666542 333322 122222222222 12222678999999999999999999999999999998776
Q ss_pred h
Q psy17903 352 K 352 (355)
Q Consensus 352 ~ 352 (355)
+
T Consensus 278 ~ 278 (290)
T PRK05917 278 N 278 (290)
T ss_pred H
Confidence 5
No 69
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.93 E-value=1.8e-24 Score=183.78 Aligned_cols=211 Identities=18% Similarity=0.217 Sum_probs=171.5
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhc-----CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
.......||+.|++++||+++++.|.-+++. ....|+|||||||.||||+|..++++++. ++-..+++-.
T Consensus 14 ~~~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv-----n~k~tsGp~l 88 (332)
T COG2255 14 MKIERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV-----NLKITSGPAL 88 (332)
T ss_pred hhhhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC-----CeEecccccc
Confidence 3456678999999999999999999877743 34567999999999999999999999943 3333344333
Q ss_pred cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc------------------CCcc
Q psy17903 108 RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET------------------KSTR 169 (355)
Q Consensus 108 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------~~~~ 169 (355)
....++...+.... ++.|+||||+|++++...+.|+..||+.. +...
T Consensus 89 eK~gDlaaiLt~Le---------------~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFT 153 (332)
T COG2255 89 EKPGDLAAILTNLE---------------EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFT 153 (332)
T ss_pred cChhhHHHHHhcCC---------------cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCee
Confidence 33334443333321 44599999999999999999999998742 2355
Q ss_pred EEEEecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--
Q psy17903 170 FCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK-- 246 (355)
Q Consensus 170 ~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~-- 246 (355)
+|.+|+....+..+|+.|+. ..++..++.+|+..++.+.+...++.++++++..+++++.|.+|-+.+.|.++-.++
T Consensus 154 LIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLrRVRDfa~V 233 (332)
T COG2255 154 LIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLRRVRDFAQV 233 (332)
T ss_pred EeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHHHHHHHHHH
Confidence 78889999999999999988 678889999999999999999999999999999999999999999999999998877
Q ss_pred -CCCCCCHHHHHHHhCCC
Q psy17903 247 -GGEGIVNEDVLEVTGVI 263 (355)
Q Consensus 247 -~~~~It~~~v~~~~~~~ 263 (355)
+...|+.+...+++...
T Consensus 234 ~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 234 KGDGDIDRDIADKALKML 251 (332)
T ss_pred hcCCcccHHHHHHHHHHh
Confidence 56778888777766543
No 70
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.92 E-value=1.6e-23 Score=190.53 Aligned_cols=201 Identities=18% Similarity=0.206 Sum_probs=158.8
Q ss_pred CCCCcccccHHHHHHHHHHHh-----cCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLS-----GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK 116 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~-----~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 116 (355)
++|++++|++++++.|..++. .+..++++|+||||+|||++|+++++.+.. .+...++........+...
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~-----~~~~~~~~~~~~~~~l~~~ 75 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV-----NLKITSGPALEKPGDLAAI 75 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEEeccchhcCchhHHHH
Confidence 479999999999999999886 344567999999999999999999999843 2333333322223333333
Q ss_pred HHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc------------------CCccEEEEecCCc
Q psy17903 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET------------------KSTRFCLICNYVS 178 (355)
Q Consensus 117 i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------~~~~~Il~~~~~~ 178 (355)
+.... ...++||||+|.++++.++.|+..+++.. ...++|.+++...
T Consensus 76 l~~~~---------------~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~ 140 (305)
T TIGR00635 76 LTNLE---------------EGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG 140 (305)
T ss_pred HHhcc---------------cCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcc
Confidence 22211 22499999999999998888988876433 2356777888888
Q ss_pred cccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh---CCCCCCHH
Q psy17903 179 CIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK---GGEGIVNE 254 (355)
Q Consensus 179 ~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~---~~~~It~~ 254 (355)
.+.+++++||. .+.|.+++.+++.+++++.+...++.++++++..+++.++|++|.+.+.++.+..++ +...|+.+
T Consensus 141 ~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~~~~~~~it~~ 220 (305)
T TIGR00635 141 MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQVRGQKIINRD 220 (305)
T ss_pred ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHcCCCCcCHH
Confidence 88899999995 679999999999999999999999999999999999999999999999998876554 44669999
Q ss_pred HHHHHhCC
Q psy17903 255 DVLEVTGV 262 (355)
Q Consensus 255 ~v~~~~~~ 262 (355)
.+.+++..
T Consensus 221 ~v~~~l~~ 228 (305)
T TIGR00635 221 IALKALEM 228 (305)
T ss_pred HHHHHHHH
Confidence 99887754
No 71
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.92 E-value=2.2e-24 Score=182.05 Aligned_cols=165 Identities=28% Similarity=0.434 Sum_probs=136.9
Q ss_pred HHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCC---------------------ccccceeeecCCCccchHH
Q psy17903 55 SVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGD---------------------MYRERILELNASDDRGIQV 112 (355)
Q Consensus 55 ~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~---------------------~~~~~~~~~~~~~~~~~~~ 112 (355)
+.|.+.+..++.+| +||+||+|+|||++++.+++.+.+. ..+..++..+. ...+++.
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-~~~~~~~ 80 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-QSIKVDQ 80 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-CcCCHHH
Confidence 46788889999988 9999999999999999999999763 11112222222 2356677
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeeeEE
Q psy17903 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFR 192 (355)
Q Consensus 113 i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~ 192 (355)
++..+..+...+..+ ++++|||||+|.++.++++.|+++||+++.+++||+++++..++.+++++||..++
T Consensus 81 i~~i~~~~~~~~~~~---------~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~ 151 (188)
T TIGR00678 81 VRELVEFLSRTPQES---------GRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLP 151 (188)
T ss_pred HHHHHHHHccCcccC---------CeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEee
Confidence 877776655443322 67899999999999999999999999999999999999988899999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHH
Q psy17903 193 FKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRA 235 (355)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~ 235 (355)
|.+++.+++.+|+.+. | +++++++.++..++||+|++
T Consensus 152 ~~~~~~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 152 FPPLSEEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred CCCCCHHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 9999999999999876 4 78999999999999999864
No 72
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.92 E-value=5.7e-23 Score=188.40 Aligned_cols=273 Identities=16% Similarity=0.136 Sum_probs=216.2
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCc-cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeC
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe 145 (355)
|.++|||+...-+...++.+.+.+..+. ..+++..+++.+... +...+......+.. +++|+|+|++
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~~~fn~~~~d~~~~~~---~~~~~~~~~t~pff---------~~~rlVvv~~ 69 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEWKSFNYSRLDGDDADQ---AIQALNEAMTPPFG---------SGGRLVWLKN 69 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchhhhcchhhcCCccchH---HHHHHHHhcCCCCC---------CCceEEEEeC
Confidence 4589999999888888888888765432 245667777655322 23333332222222 2678999999
Q ss_pred CCCC---CHHHHHHHHHHhhhccCCccEEEEec-CCc---cccccccCCeeeEEecCC---CHHHHHHHHHHHHHHcCCC
Q psy17903 146 ADSM---THAAQAALRRTMEKETKSTRFCLICN-YVS---CIIQPLTSRCSKFRFKPL---AENTMLTRLQYICEQESVM 215 (355)
Q Consensus 146 ~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~-~~~---~l~~~l~sr~~~i~~~~~---~~~~~~~~l~~~~~~~~~~ 215 (355)
++.+ +.+..+.|.++++++++++++|+++. ..+ +..+.+++.+..+.|.++ +.+++..|++..+++.|+.
T Consensus 70 ~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~~~~~~~g~~ 149 (326)
T PRK07452 70 SPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVERTAQELGVK 149 (326)
T ss_pred chhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHHHHHHHcCCC
Confidence 8654 55677899999999888888888643 332 345667777888888765 4577999999999999999
Q ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHc
Q psy17903 216 CDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILE 290 (355)
Q Consensus 216 ~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~ 290 (355)
+++++++.|+..+++|++.+.+++++++.|. +++.||.++|++++... ...+++++++ ++...+...+++++..
T Consensus 150 i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~~~l~~L~~~ 228 (326)
T PRK07452 150 LTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKALALLDDLLDA 228 (326)
T ss_pred CCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 9999999999999999999999999999995 46689999999999876 5789999998 9999999999999999
Q ss_pred CCCHHHHHHHHHHHHHh------------------------------------cCCCCHHHHHHHHHHHHHHHHHhhCCC
Q psy17903 291 AYSATQLFDQFHDIVMS------------------------------------ASSLSDKQKALILEKLAECNARLQDGA 334 (355)
Q Consensus 291 g~~~~~i~~~l~~~~~~------------------------------------~~~~~~~~~~~i~~~l~~~~~~l~~g~ 334 (355)
|.++..|+..+.++++. .++++...+.+++..|.++|+.+|+|.
T Consensus 229 g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l~~L~~~D~~iK~g~ 308 (326)
T PRK07452 229 NEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLLPLLLDLEASLKQGA 308 (326)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC
Confidence 99888777766544331 245777778889999999999999998
Q ss_pred ChHHHHHHHHHHHHHHHh
Q psy17903 335 SEYIQILDLGSIVIKANK 352 (355)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~ 352 (355)
++...||.++.++|+.++
T Consensus 309 ~~~~~le~~i~~~~~~~~ 326 (326)
T PRK07452 309 NPINALQDKLIELCQLLQ 326 (326)
T ss_pred ChHHHHHHHHHHHHHhhC
Confidence 888899999999998764
No 73
>PRK05629 hypothetical protein; Validated
Probab=99.92 E-value=1.9e-22 Score=183.85 Aligned_cols=267 Identities=10% Similarity=0.029 Sum_probs=219.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcC-CccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 146 (355)
.|||||+.-.-.......+.+.+.. +...+++..+++.+.. ...+.+ ....+.++ ++|+|+|++.
T Consensus 8 vyL~~G~e~~l~~~~~~~i~~~~~~~~~~~~n~~~~d~~e~~-~~~l~~----~~t~slF~---------~~rlV~v~~~ 73 (318)
T PRK05629 8 VHLVLGDDEFLAERARLNIVHDIRSSMADSLQVTTLKASEVS-QGELLD----ALSPSLFG---------EDRVIVLTNM 73 (318)
T ss_pred eEEEEeCHHHHHHHHHHHHHHHHhccCCCCCceEEeecccCC-HHHHHH----hhCcCccC---------CceEEEEeCh
Confidence 3999999866655565666666544 3335688888877643 333332 22233332 6789999998
Q ss_pred CCCCHHHHHHHHHHhhhccCCccEEEEecCC---ccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q psy17903 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYV---SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALET 223 (355)
Q Consensus 147 d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~---~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 223 (355)
+.......+.++.++.++++.+++|+++... .++.+.++..+..++|.++...++..|+.+++++.|+.+++++++.
T Consensus 74 ~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~~~g~~i~~~A~~~ 153 (318)
T PRK05629 74 EQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFKNHGVRPTPDVVHA 153 (318)
T ss_pred HhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 8876666788999999998888888877543 2355678888999999999999999999999999999999999999
Q ss_pred HHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHH
Q psy17903 224 LVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQ 300 (355)
Q Consensus 224 l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~ 300 (355)
|+..+++|+..+.+++++++.+. ++.||.++|++++......++|+++++ ++..++..++++++..|.+|..|+..
T Consensus 154 L~~~~g~dl~~l~~EleKL~~~~-~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~~~g~~pi~il~~ 232 (318)
T PRK05629 154 LLEGVGSDLRELASAISQLVEDT-QGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRALQLGVSPVALAAA 232 (318)
T ss_pred HHHHHCccHHHHHHHHHHHHhcC-CCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHH
Confidence 99999999999999999998764 568999999999999999999999999 99999999999999999999988777
Q ss_pred HHHHHH---------------------------------hcCCCCHHHHHHHHHHHHHHHHHhhCC-CChHHHHHHHHHH
Q psy17903 301 FHDIVM---------------------------------SASSLSDKQKALILEKLAECNARLQDG-ASEYIQILDLGSI 346 (355)
Q Consensus 301 l~~~~~---------------------------------~~~~~~~~~~~~i~~~l~~~~~~l~~g-~~~~~~l~~~~~~ 346 (355)
+.++++ +.+.++...+.+++..|.++|+.+|+| .++.+.||.+|.+
T Consensus 233 l~~~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~K~~~~d~~~~lE~~i~~ 312 (318)
T PRK05629 233 LSMKVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKGQGGDPEFAIESAVRR 312 (318)
T ss_pred HHHHHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHH
Confidence 654422 136789999999999999999999986 6999999999999
Q ss_pred HHH
Q psy17903 347 VIK 349 (355)
Q Consensus 347 ~~~ 349 (355)
+.+
T Consensus 313 ~~~ 315 (318)
T PRK05629 313 VAE 315 (318)
T ss_pred HHh
Confidence 976
No 74
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.92 E-value=3.5e-22 Score=177.96 Aligned_cols=274 Identities=11% Similarity=0.122 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCC--------ccccceeeecC-CCccchHHHHHHHHHH
Q psy17903 51 QEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGD--------MYRERILELNA-SDDRGIQVIRDKVKTF 120 (355)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~--------~~~~~~~~~~~-~~~~~~~~i~~~i~~~ 120 (355)
..++..+.+.+++++.+| |||+|++|+||+.++..+++.+.|. ..+.++..++. ....+++.+++.+..+
T Consensus 2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~ 81 (299)
T PRK07132 2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKL 81 (299)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHh
Confidence 356788999999999999 9999999999999999999999652 12224445552 2336678888777766
Q ss_pred HHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeeeEEecCCCHHH
Q psy17903 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200 (355)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~ 200 (355)
...+... +++||+|||+++.++..++++|+++||+||.+++||++++.+.++.++++|||..++|.+++.++
T Consensus 82 ~~~~~~~--------~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~ 153 (299)
T PRK07132 82 YFSSFVQ--------SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQK 153 (299)
T ss_pred ccCCccc--------CCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHH
Confidence 5443221 16789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCC--ChHHHHHHHhc--C-
Q psy17903 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVI--PNPWIEKLLKV--D- 275 (355)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~--~~~~~~~l~~~--~- 275 (355)
+..|+... .++++....++..++ ++++++..+..... -....+.+.+... ....+....+. +
T Consensus 154 l~~~l~~~------~~~~~~a~~~a~~~~-~~~~a~~~~~~~~~------~~~~~~~~~l~~~~~~~~~l~~~~~~~~~k 220 (299)
T PRK07132 154 ILAKLLSK------NKEKEYNWFYAYIFS-NFEQAEKYINKESE------NLLKKFEEALNKSLKEKYELILFLNKKLTK 220 (299)
T ss_pred HHHHHHHc------CCChhHHHHHHHHcC-CHHHHHHHHhcCCH------HHHHHHHHHHHHhhhhHHHHHHHHHhhcCh
Confidence 99998742 367777777777766 59988887642110 0000111111000 00111111111 1
Q ss_pred -C----HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHH
Q psy17903 276 -S----FQVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVI 348 (355)
Q Consensus 276 -~----~~~~~~~l~~l~~--~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~ 348 (355)
+ ..-+.-+.++++. .+.+...+... ...+.... ++... +++.+.++..+|..++|..+++|.|+.++.
T Consensus 221 e~~~~ll~~l~~~~rd~l~~~~~~~~~~i~~~-~~~i~~~~-~s~~~---li~~i~~~~~~L~~N~N~~l~~e~lll~l~ 295 (299)
T PRK07132 221 ENALFLLKLLKFFFKSIFANKKKKNPKNIKVA-FSKKKKFK-IEFFE---LITIIDEFLNSLETNENFNLQKQAFLVKIY 295 (299)
T ss_pred hhHHHHHHHHHHHHHHHHHHhccCChHhHhhH-HHHHHHHh-cCHHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 0 1222334444432 23333333333 23222221 44433 488999999999999999999999999987
Q ss_pred HH
Q psy17903 349 KA 350 (355)
Q Consensus 349 ~~ 350 (355)
+.
T Consensus 296 e~ 297 (299)
T PRK07132 296 EI 297 (299)
T ss_pred Hh
Confidence 54
No 75
>KOG1969|consensus
Probab=99.92 E-value=1.1e-22 Score=192.15 Aligned_cols=217 Identities=27% Similarity=0.441 Sum_probs=174.2
Q ss_pred CCCccccccCCCCCCcccccHHHHHHHHHHHhc--------------------------------CCCCe--EEEECCCC
Q psy17903 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG--------------------------------ADLPH--FLFYGPPG 76 (355)
Q Consensus 31 ~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~--------------------------------~~~~~--~ll~Gp~G 76 (355)
.+.+|++||+|+.|-+++|.+.+-+.+-.|++. ++++. +||+||||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 344999999999999999999888777777631 12233 99999999
Q ss_pred CCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHH
Q psy17903 77 TGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAA 156 (355)
Q Consensus 77 ~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~ 156 (355)
.||||+|+.+|++. .+.++++|+++.+....+.+.+........... .+++| ..+||||||.-...+.+.
T Consensus 337 lGKTTLAHViAkqa-----GYsVvEINASDeRt~~~v~~kI~~avq~~s~l~-adsrP----~CLViDEIDGa~~~~Vdv 406 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQA-----GYSVVEINASDERTAPMVKEKIENAVQNHSVLD-ADSRP----VCLVIDEIDGAPRAAVDV 406 (877)
T ss_pred CChhHHHHHHHHhc-----CceEEEecccccccHHHHHHHHHHHHhhccccc-cCCCc----ceEEEecccCCcHHHHHH
Confidence 99999999999997 568999999999999999999887665432211 12333 389999999999888888
Q ss_pred HHHHhhh------ccC---------------CccEEEEecCCc-cccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCC
Q psy17903 157 LRRTMEK------ETK---------------STRFCLICNYVS-CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESV 214 (355)
Q Consensus 157 Ll~~le~------~~~---------------~~~~Il~~~~~~-~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~ 214 (355)
++..++. ++. .--+|++||+.. ..+.+|+--|.++.|.+|+..-+.+.|+.+|.++|+
T Consensus 407 ilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~m 486 (877)
T KOG1969|consen 407 ILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENM 486 (877)
T ss_pred HHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcC
Confidence 8888862 111 123677888754 456778888999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCC--CCCCHHHHH
Q psy17903 215 MCDFKALETLVETSGGDMRRAITCLQSCARLKGG--EGIVNEDVL 257 (355)
Q Consensus 215 ~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~--~~It~~~v~ 257 (355)
.++..++..|++.+++|+|..+|.||.++..... ..|...++-
T Consensus 487 r~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~ 531 (877)
T KOG1969|consen 487 RADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLIC 531 (877)
T ss_pred CCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhh
Confidence 9999999999999999999999999999886522 235544444
No 76
>PRK07914 hypothetical protein; Reviewed
Probab=99.92 E-value=4.2e-22 Score=181.63 Aligned_cols=270 Identities=12% Similarity=0.052 Sum_probs=222.4
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcC--CccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEe
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFG--DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiD 144 (355)
|-|+|||+.-.........+.+.... +...+++..+++.+... .. +......+.++ ++|+|+|+
T Consensus 6 ~iYll~G~E~~l~~~~~~~i~~~~~~~~~~~~~n~~~~d~~~~~~-~~----i~~~~t~plF~---------~rRlV~v~ 71 (320)
T PRK07914 6 PLHLVLGDEELLVERAVAAVLRSARQRAGTADVPVSRMRAGDVST-YE----LAELLSPSLFA---------EERVVVLE 71 (320)
T ss_pred ceEEEEecHHHHHHHHHHHHHHHHhcCcCCCCCceEEeccccCCH-HH----HHHhcCCCCCC---------CceEEEEe
Confidence 34999999977777777788776543 33466788888866432 22 23333333332 77899999
Q ss_pred CCCCCCHHHHHHHHHHhhhccCCccEEEEecCC---ccccccccCCe-eeEEecCC-CHHHHHHHHHHHHHHcCCCCCHH
Q psy17903 145 EADSMTHAAQAALRRTMEKETKSTRFCLICNYV---SCIIQPLTSRC-SKFRFKPL-AENTMLTRLQYICEQESVMCDFK 219 (355)
Q Consensus 145 e~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~---~~l~~~l~sr~-~~i~~~~~-~~~~~~~~l~~~~~~~~~~~~~~ 219 (355)
+...+..+..+.|..+++++++.+++|++++.. .++.++++..+ ..+.|.++ +..++..|+..++++.|+.++++
T Consensus 72 ~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~~a~~~g~~i~~~ 151 (320)
T PRK07914 72 AAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRKEFRSLRVKVDDD 151 (320)
T ss_pred ChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 987777667788999999999888888876432 23456777665 48899998 99999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHH
Q psy17903 220 ALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQ 296 (355)
Q Consensus 220 ~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~ 296 (355)
+++.|++.+++|+..+.+++++++.+. ++.||.++|++++......++|+++++ ++..++..++++|+..|.++..
T Consensus 152 A~~~L~~~~g~dl~~l~~EleKL~~~~-~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~~L~~~ge~p~~ 230 (320)
T PRK07914 152 TVTALLDAVGSDLRELASACSQLVADT-GGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALRWAMMRGEPHVV 230 (320)
T ss_pred HHHHHHHHHCccHHHHHHHHHHHhcCC-CCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHHHHHHCCCchHH
Confidence 999999999999999999999987654 468999999999999999999999998 9999999999999999999988
Q ss_pred HHHHHHHHHHh-------------------------------cCCCCHHHHHHHHHHHHHHHHHhhCC-CChHHHHHHHH
Q psy17903 297 LFDQFHDIVMS-------------------------------ASSLSDKQKALILEKLAECNARLQDG-ASEYIQILDLG 344 (355)
Q Consensus 297 i~~~l~~~~~~-------------------------------~~~~~~~~~~~i~~~l~~~~~~l~~g-~~~~~~l~~~~ 344 (355)
++..+.++++. .+.++...+.+++..|.++|..+|+| .++.+.||.++
T Consensus 231 il~~l~~~~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~lK~~~~~~~~~lE~~i 310 (320)
T PRK07914 231 LADALAEAVHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNADVKGAAADADYALESAV 310 (320)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHH
Confidence 88776655442 36899999999999999999999998 79999999999
Q ss_pred HHHHHHH
Q psy17903 345 SIVIKAN 351 (355)
Q Consensus 345 ~~~~~~~ 351 (355)
.++|...
T Consensus 311 ~~~~~~~ 317 (320)
T PRK07914 311 RRVAELV 317 (320)
T ss_pred HHHHHHh
Confidence 9998743
No 77
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.90 E-value=2.7e-23 Score=170.15 Aligned_cols=140 Identities=33% Similarity=0.576 Sum_probs=110.2
Q ss_pred ccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc------------------ccceeeecCCCc--
Q psy17903 49 EQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY------------------RERILELNASDD-- 107 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~------------------~~~~~~~~~~~~-- 107 (355)
||+.+++.|.+.+..++.+| +||+||+|+||+++|.++++.+.+... ..++..++....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~~ 80 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKKK 80 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccccc
Confidence 89999999999999999999 999999999999999999999987432 235566665543
Q ss_pred -cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccC
Q psy17903 108 -RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186 (355)
Q Consensus 108 -~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~s 186 (355)
..++.+++....+...+.. +++||+||||+|.|+.+++++|+++||+|+.+++||++|++..+++++++|
T Consensus 81 ~i~i~~ir~i~~~~~~~~~~---------~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~S 151 (162)
T PF13177_consen 81 SIKIDQIREIIEFLSLSPSE---------GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRS 151 (162)
T ss_dssp SBSHHHHHHHHHHCTSS-TT---------SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHT
T ss_pred hhhHHHHHHHHHHHHHHHhc---------CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHh
Confidence 6778888666654433322 267899999999999999999999999999999999999999999999999
Q ss_pred CeeeEEecCCC
Q psy17903 187 RCSKFRFKPLA 197 (355)
Q Consensus 187 r~~~i~~~~~~ 197 (355)
||..+.|++++
T Consensus 152 Rc~~i~~~~ls 162 (162)
T PF13177_consen 152 RCQVIRFRPLS 162 (162)
T ss_dssp TSEEEEE----
T ss_pred hceEEecCCCC
Confidence 99999998864
No 78
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.90 E-value=5.8e-21 Score=176.32 Aligned_cols=282 Identities=12% Similarity=0.089 Sum_probs=219.9
Q ss_pred HHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHhcCCc-cccceeeecCCCcc-chHHHHHHHHHHHHhhccCCCCCC
Q psy17903 57 LKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDR-GIQVIRDKVKTFAQQTASGFNQDG 132 (355)
Q Consensus 57 l~~~l~~--~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~-~~~~i~~~i~~~~~~~~~~~~~~~ 132 (355)
+...+.. +..|-|+|||+........++.+.+.+.... ..+++..+++.+.. ... +.+......+.++
T Consensus 9 ~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~~fn~~~~~~~e~~~~~~---~~~~~~~t~slF~----- 80 (343)
T PRK06585 9 VDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLDDPFAVVRLDGDDLDADPA---RLEDEANAISLFG----- 80 (343)
T ss_pred HHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCCCcceeeccHHHhhcCHH---HHHHHHhCCCCCC-----
Confidence 3444443 3445599999999888888888888875422 23456666654321 123 3333433344433
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCc---ccccccc--CCeeeEEecCCCHHHHHHHHHH
Q psy17903 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS---CIIQPLT--SRCSKFRFKPLAENTMLTRLQY 207 (355)
Q Consensus 133 ~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~---~l~~~l~--sr~~~i~~~~~~~~~~~~~l~~ 207 (355)
++++|+|++.+ ....+.|..+++.++..+++|+.+...+ ++.+.+. ..+..+.|.+++..++..|+..
T Consensus 81 ----~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~ 153 (343)
T PRK06585 81 ----GRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDD 153 (343)
T ss_pred ----CceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHH
Confidence 67899999664 3445678889998888888887765432 2333332 3355789999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhC-CCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHH
Q psy17903 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKY 283 (355)
Q Consensus 208 ~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~-~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~ 283 (355)
.+++.|+.+++++++.|++.++||++.+.++|++++.|.+ ++.||.++|.+++.......+++++++ ++..++..+
T Consensus 154 ~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~ 233 (343)
T PRK06585 154 ELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERA 233 (343)
T ss_pred HHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999999999999999999999999999974 468999999999999999999999998 999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHh------------------------------------cCCCCHHHHHHHHHHHHHHH
Q psy17903 284 IEDLILEAYSATQLFDQFHDIVMS------------------------------------ASSLSDKQKALILEKLAECN 327 (355)
Q Consensus 284 l~~l~~~g~~~~~i~~~l~~~~~~------------------------------------~~~~~~~~~~~i~~~l~~~~ 327 (355)
+..++..|.+|..|+..+.++++. .+.++...+.+++..|.++|
T Consensus 234 l~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d 313 (343)
T PRK06585 234 LDRALAEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQAAE 313 (343)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 999999999999888877765552 24577778888999999999
Q ss_pred HHhhCC-CChHHHHHHHHHHHHHHHhh
Q psy17903 328 ARLQDG-ASEYIQILDLGSIVIKANKT 353 (355)
Q Consensus 328 ~~l~~g-~~~~~~l~~~~~~~~~~~~~ 353 (355)
..+|+| .++.+.+|.++.++|..-++
T Consensus 314 ~~lK~~~~~~~~~le~~i~~~~~~~~~ 340 (343)
T PRK06585 314 LDCRRNPALADAIARRVLLSIAVRARR 340 (343)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence 999998 58889999999999976543
No 79
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.90 E-value=1e-20 Score=173.05 Aligned_cols=278 Identities=18% Similarity=0.174 Sum_probs=216.5
Q ss_pred HHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCC
Q psy17903 55 SVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133 (355)
Q Consensus 55 ~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 133 (355)
..+...++++..++ |+|||+.-.-....+..+.+.+..+....+ +.++. ...+ +.+......+.++
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~~~-~~~~~---~~~~---~i~~~~~t~plF~------ 70 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENELKT-LYFDE---YDFE---QAKDFLSQSSLFG------ 70 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHhhh-hchhh---ccHH---HHHHHHhcccccC------
Confidence 45677788887766 999999988888888888877654322222 33332 2233 3344444444443
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCcc---ccccccCC--eeeEEecCCCHHHHHHHHHHH
Q psy17903 134 PCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC---IIQPLTSR--CSKFRFKPLAENTMLTRLQYI 208 (355)
Q Consensus 134 ~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~---l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~ 208 (355)
++|+|+|.+...+.......|..++++++..+++|++.....+ +.+.+... +..+.|.+++..++..|+...
T Consensus 71 ---~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~~~l~~~i~~~ 147 (328)
T PRK08487 71 ---GKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNAREALELLQER 147 (328)
T ss_pred ---CceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCHHHHHHHHHHH
Confidence 7789999998777776778999999988877777765543322 22333332 568999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHH
Q psy17903 209 CEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIE 285 (355)
Q Consensus 209 ~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~ 285 (355)
+++.|+.+++++++.|+..+++|+..+.++|++++.|. +.||.++|.+++....+.++++++++ ++ .+..+++
T Consensus 148 ~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~--~~It~edV~~~v~~~~e~~vF~l~dai~~g~--~a~~~l~ 223 (328)
T PRK08487 148 AKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILN--EPITLKDIQELVFGLGSVSFEDFFEKLLNKK--DIKDDLE 223 (328)
T ss_pred HHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhc--CCCCHHHHHHHhcccccccHHHHHHHHHCCC--cHHHHHH
Confidence 99999999999999999999999999999999999995 37999999999999999999999998 55 5778898
Q ss_pred HHHHcCCCHHHHHHHHHHHHHh-----------------------------------cCCCCHHHHHHHHHHHHHHHHHh
Q psy17903 286 DLILEAYSATQLFDQFHDIVMS-----------------------------------ASSLSDKQKALILEKLAECNARL 330 (355)
Q Consensus 286 ~l~~~g~~~~~i~~~l~~~~~~-----------------------------------~~~~~~~~~~~i~~~l~~~~~~l 330 (355)
+|...|.+|..|+..+.++++. .++++...+.+++..|.++|+.+
T Consensus 224 ~L~~~g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L~~~l~~L~e~D~~l 303 (328)
T PRK08487 224 KLLEEGFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQYKEIFELLLEWELEL 303 (328)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 9988899988887766654431 34677888889999999999999
Q ss_pred hCC--CChHHHHHHHHHHHHHHHh
Q psy17903 331 QDG--ASEYIQILDLGSIVIKANK 352 (355)
Q Consensus 331 ~~g--~~~~~~l~~~~~~~~~~~~ 352 (355)
|+| .+..+.+|.+++++.+.+.
T Consensus 304 K~g~~~~~~~~~~~~~~~~~~~~~ 327 (328)
T PRK08487 304 KTGQKIDKNLFLLSTLIKIQKILN 327 (328)
T ss_pred HcCCCccHHHHHHHHHHHHHHHhc
Confidence 999 3667899999999987764
No 80
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.90 E-value=8.1e-21 Score=171.92 Aligned_cols=273 Identities=18% Similarity=0.203 Sum_probs=182.2
Q ss_pred cHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc--------------------ccceeeecCCC--
Q psy17903 50 QQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------------RERILELNASD-- 106 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~--------------------~~~~~~~~~~~-- 106 (355)
+....+.+... .++.+| +||+||+|+||+++|+.+++.+.+... ..+++++++..
T Consensus 6 ~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~ 83 (325)
T PRK08699 6 HQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE 83 (325)
T ss_pred cHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc
Confidence 44445555544 468888 999999999999999999999986321 13466665521
Q ss_pred --------ccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCc
Q psy17903 107 --------DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178 (355)
Q Consensus 107 --------~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 178 (355)
..+++.+++........+..+ ++||++||+++.|+...++.|++.||+++.++.||++|+++.
T Consensus 84 ~~~g~~~~~I~id~iR~l~~~~~~~p~~~---------~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~ 154 (325)
T PRK08699 84 PENGRKLLQIKIDAVREIIDNVYLTSVRG---------GLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAAD 154 (325)
T ss_pred ccccccCCCcCHHHHHHHHHHHhhCcccC---------CceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChH
Confidence 256888998766655443332 678999999999999999999999999988899999999999
Q ss_pred cccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHH
Q psy17903 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258 (355)
Q Consensus 179 ~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~ 258 (355)
.+.++++|||..+.|.+++.+++..||.. .+.. ... ..+ ..++|.+..+... +... -.+.+.+
T Consensus 155 ~ll~ti~SRc~~~~~~~~~~~~~~~~L~~----~~~~--~~~-~~l-~~~~g~p~~~~~~-~~~~--------~r~~~~~ 217 (325)
T PRK08699 155 KVLPTIKSRCRKMVLPAPSHEEALAYLRE----RGVA--EPE-ERL-AFHSGAPLFDEEP-ELRA--------LRIKLLD 217 (325)
T ss_pred hChHHHHHHhhhhcCCCCCHHHHHHHHHh----cCCC--cHH-HHH-HHhCCChhhhcCc-hHHH--------HHHHHHH
Confidence 99999999999999999999999999974 2432 221 122 3567766433110 0000 0011111
Q ss_pred HhCCCChHHHHHHHhc--C---C----HHHHHHHHHHHHHc--CCCH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q psy17903 259 VTGVIPNPWIEKLLKV--D---S----FQVLEKYIEDLILE--AYSA---TQLFDQFHDIVMSASSLSDKQKALILEKLA 324 (355)
Q Consensus 259 ~~~~~~~~~~~~l~~~--~---~----~~~~~~~l~~l~~~--g~~~---~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~ 324 (355)
.+.......+..+.+. + + .+-+..+++|++.. |... .+....+.. ....++...+..+++.+.
T Consensus 218 ~l~~~~~~~~l~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~~~~~~d~~~~l~~---~a~~~~~~~L~~~~~~l~ 294 (325)
T PRK08699 218 ILAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMKPVYYPAYEDRLLQ---TASGFRPRNVFAAEDMLK 294 (325)
T ss_pred HHHccChhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCCcccCHhHHHHHHH---HHHhcCHHHHHHHHHHHH
Confidence 1212112222222211 1 1 23344556665432 2111 111222222 223578888999999999
Q ss_pred HHHHHhhCCCChHHHHHHHHHHHHHHHhh
Q psy17903 325 ECNARLQDGASEYIQILDLGSIVIKANKT 353 (355)
Q Consensus 325 ~~~~~l~~g~~~~~~l~~~~~~~~~~~~~ 353 (355)
++...+..+.|..+.+|.++.++...+++
T Consensus 295 ~~~~~l~~n~n~~L~le~lll~~~~~~~~ 323 (325)
T PRK08699 295 QLAPYGFHTLNVKMQIEHLLINYLELKKE 323 (325)
T ss_pred HHHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999877653
No 81
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.89 E-value=1e-21 Score=171.02 Aligned_cols=212 Identities=14% Similarity=0.184 Sum_probs=153.5
Q ss_pred CCCccccccCCC-CCCccc--ccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 31 KPVPWVEKYRPK-TIDDVI--EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 31 ~~~~~~~k~~p~-~~~~~v--g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
.|.++--.+.|. +|++++ ++..++..+.++......++++||||+|+|||++++++++.+........++..+....
T Consensus 7 ~Ql~l~~~~~~~~~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~ 86 (235)
T PRK08084 7 AQLSLPLYLPDDETFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW 86 (235)
T ss_pred cceecCCCCCCcCCccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh
Confidence 466665445544 688887 36677888888887666667999999999999999999998764333223333332111
Q ss_pred cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHhhhc--cCCccEEEEecCC-c---c
Q psy17903 108 RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKE--TKSTRFCLICNYV-S---C 179 (355)
Q Consensus 108 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~--~~~~~~Il~~~~~-~---~ 179 (355)
...+.+..+. ...+|+|||++.+.. ..+..|...+... .....+|++++.+ . .
T Consensus 87 ----~~~~~~~~~~---------------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~ 147 (235)
T PRK08084 87 ----FVPEVLEGME---------------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNL 147 (235)
T ss_pred ----hhHHHHHHhh---------------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCc
Confidence 0111112211 123899999999864 3344555554432 2234577777754 2 2
Q ss_pred ccccccCCe---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh--hCCCCCCHH
Q psy17903 180 IIQPLTSRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--KGGEGIVNE 254 (355)
Q Consensus 180 l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~--~~~~~It~~ 254 (355)
+.+.|+||+ ..+.+.+|+.+++.+++++.+...|+.++++++++|++.++||+|.+.+.++.+... ..+..||.+
T Consensus 148 ~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~ 227 (235)
T PRK08084 148 GLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIP 227 (235)
T ss_pred ccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 579999999 699999999999999999989989999999999999999999999999999998643 356789999
Q ss_pred HHHHHhC
Q psy17903 255 DVLEVTG 261 (355)
Q Consensus 255 ~v~~~~~ 261 (355)
.+++++.
T Consensus 228 ~~k~~l~ 234 (235)
T PRK08084 228 FVKEILK 234 (235)
T ss_pred HHHHHHc
Confidence 9988764
No 82
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.89 E-value=2.5e-20 Score=172.13 Aligned_cols=280 Identities=18% Similarity=0.141 Sum_probs=217.6
Q ss_pred HHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcC-CccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCC
Q psy17903 55 SVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132 (355)
Q Consensus 55 ~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~ 132 (355)
..+...++++ .++ ++|||+.-.-+...++.+.+.+.. +....++..+++.+. ..+.+. ......+.++
T Consensus 6 ~~~~~~~~~~-~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~-~~~~l~---~~~~t~~lF~----- 75 (340)
T PRK05574 6 EQLEKQLKKG-LAPLYLLYGDEPLLLQEAKDAIRAAARAQGFDERNVFTFDGSET-DWDDVL---EACQSLPLFS----- 75 (340)
T ss_pred HHHHHHHhCC-CCceEEEEcCcHHHHHHHHHHHHHHHHcCCCceeeEEEeecCCC-CHHHHH---HHhhccCccc-----
Confidence 3455666666 444 999999966666666777665432 334556677777643 233333 3333333332
Q ss_pred CCCCCcEEEEEeCCCCCCHH----HHHHHHHHhhhccC--CccEEEEecCCc---cc---cccccCCeeeEEecCCCHHH
Q psy17903 133 KPCPPFKIVILDEADSMTHA----AQAALRRTMEKETK--STRFCLICNYVS---CI---IQPLTSRCSKFRFKPLAENT 200 (355)
Q Consensus 133 ~~~~~~~vliiDe~d~l~~~----~~~~Ll~~le~~~~--~~~~Il~~~~~~---~l---~~~l~sr~~~i~~~~~~~~~ 200 (355)
++++|+|++++.+... ....|..++ ++++ ..++++..+..+ ++ .+++.++|..+.|.+++..+
T Consensus 76 ----~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~~~~~~~~~~ 150 (340)
T PRK05574 76 ----DRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVVEAQPPKEAE 150 (340)
T ss_pred ----cCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEEEcCCCCHHH
Confidence 6689999999998654 334555556 4443 345555544332 23 67788889999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHHHHhc---CCH
Q psy17903 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSF 277 (355)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~ 277 (355)
+..|+...++..|+.+++++++.|++.++||+..+.+++++++.+.+++.||.++|.+++.......+++++++ ++.
T Consensus 151 ~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l~dai~~~~~ 230 (340)
T PRK05574 151 LPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDLVDAILAGKI 230 (340)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCH
Confidence 99999999999999999999999999999999999999999999985555999999999999988999999998 889
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------------------------------cCCCCHHHHHHHHHHH
Q psy17903 278 QVLEKYIEDLILEAYSATQLFDQFHDIVMS----------------------------------ASSLSDKQKALILEKL 323 (355)
Q Consensus 278 ~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~----------------------------------~~~~~~~~~~~i~~~l 323 (355)
..+...+..+...|.++..++..+.++++. .+.++...+.+++..|
T Consensus 231 ~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~~L~~~l~~L 310 (340)
T PRK05574 231 KRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLKQLKQAIQLL 310 (340)
T ss_pred HHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999998899888888877655442 2578888999999999
Q ss_pred HHHHHHhhCC--CChHHHHHHHHHHHHH
Q psy17903 324 AECNARLQDG--ASEYIQILDLGSIVIK 349 (355)
Q Consensus 324 ~~~~~~l~~g--~~~~~~l~~~~~~~~~ 349 (355)
.++|..+|+| .+..+.||.|+.++|.
T Consensus 311 ~~~d~~iK~~~~~~~~~~le~~ii~l~~ 338 (340)
T PRK05574 311 AETDYQIKTGYGGDKWLELELLLLKLAG 338 (340)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhcc
Confidence 9999999999 5889999999999985
No 83
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.88 E-value=4.2e-20 Score=163.14 Aligned_cols=260 Identities=17% Similarity=0.182 Sum_probs=173.3
Q ss_pred ccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc-------------------ccceeeecCCC-c
Q psy17903 49 EQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------------RERILELNASD-D 107 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~~~~~~-~ 107 (355)
.|+.+++.|.+.+.+++.+| |||+|| +||+++|..+++.+.+... ..++..+.... .
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 57889999999999999999 999996 6899999999999986321 12344444332 3
Q ss_pred cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCC
Q psy17903 108 RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187 (355)
Q Consensus 108 ~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr 187 (355)
.+++.+++.+..+...+..+ ++||+|||++|.|+..+.|+|+++||+|+.+++||++|++++.++|+|+||
T Consensus 84 I~idqIR~l~~~~~~~p~~~---------~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SR 154 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGYEG---------KQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSR 154 (290)
T ss_pred CCHHHHHHHHHHHhhCcccC---------CcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHc
Confidence 56789998888877655433 678999999999999999999999999999999999999999999999999
Q ss_pred eeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHH
Q psy17903 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPW 267 (355)
Q Consensus 188 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~ 267 (355)
|+.++|++ +.+++.+++. +.| ++.+....++.. .|+++.++..++.-.... + .+.+........
T Consensus 155 cq~i~f~~-~~~~~~~~L~----~~g--~~~~~a~~la~~-~~s~~~A~~l~~~~~~~~----~-~~~~~~~~~~l~--- 218 (290)
T PRK07276 155 TQIFHFPK-NEAYLIQLLE----QKG--LLKTQAELLAKL-AQSTSEAEKLAQNKKFLE----L-IDQAERFVTILL--- 218 (290)
T ss_pred ceeeeCCC-cHHHHHHHHH----HcC--CChHHHHHHHHH-CCCHHHHHHHhCChhHHH----H-HHHHHHHHHHhc---
Confidence 99999976 7777777775 345 444444555544 468999988773111100 0 011111110000
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHH
Q psy17903 268 IEKLLKVDSFQVLEKYIEDLILEAYS---ATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLG 344 (355)
Q Consensus 268 ~~~l~~~~~~~~~~~~l~~l~~~g~~---~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~ 344 (355)
.+...+.-.+..+.....+ ...++..+..++.+ ++........++.....+.....+++-...||.|+
T Consensus 219 -------~~~~~~~l~~~~l~~~~~~~e~q~~~l~~l~~~~~~--~~~~~~~~~~L~~~~~~r~~w~~Nv~~~~~le~l~ 289 (290)
T PRK07276 219 -------KDKDEAYLQVARLVQLADEKEEQDQVLTLLTLLLAQ--ERMQVNVRTQLEAVYQARKMWQSNVSFQNALEYMV 289 (290)
T ss_pred -------cChHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhHHHHHHhccCHHHHHHHHh
Confidence 1110111111111111111 11222222222212 23334456667888888888888999999999886
No 84
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.88 E-value=1.6e-20 Score=182.17 Aligned_cols=268 Identities=18% Similarity=0.219 Sum_probs=179.6
Q ss_pred ccccCCCCCCcccccHHHHHHHHHHHhc----CCCCe-EEEECCCCCCHHHHHHHHHHHhcC-----CccccceeeecCC
Q psy17903 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSG----ADLPH-FLFYGPPGTGKTSTMIAACHQLFG-----DMYRERILELNAS 105 (355)
Q Consensus 36 ~~k~~p~~~~~~vg~~~~~~~l~~~l~~----~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~-----~~~~~~~~~~~~~ 105 (355)
...|.| +.|.|+++.++.|..++.. ....+ ++|+|+||||||++++.+.+++.. ....+.++++||.
T Consensus 749 ~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm 825 (1164)
T PTZ00112 749 QLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGM 825 (1164)
T ss_pred CcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCC
Confidence 334555 5688999998888776643 33334 579999999999999999988742 1223678899997
Q ss_pred CccchHHHHHHHH-HHHHhhc-cC----------CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc---cCCccE
Q psy17903 106 DDRGIQVIRDKVK-TFAQQTA-SG----------FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE---TKSTRF 170 (355)
Q Consensus 106 ~~~~~~~i~~~i~-~~~~~~~-~~----------~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~---~~~~~~ 170 (355)
.......+...+. .+....+ .+ ............||||||+|.|....++.|+.+++.+ ...+++
T Consensus 826 ~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiL 905 (1164)
T PTZ00112 826 NVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVL 905 (1164)
T ss_pred ccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEE
Confidence 6544443332222 1100000 00 0000000012348999999999877777787777643 334677
Q ss_pred EEEecC---CccccccccCCee--eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HcCCCHHHHHHHHHHH
Q psy17903 171 CLICNY---VSCIIQPLTSRCS--KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVE---TSGGDMRRAITCLQSC 242 (355)
Q Consensus 171 Il~~~~---~~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~---~~~g~~r~~~~~l~~~ 242 (355)
|+++|. +..+.+.+++|+. .+.|+|++.+++.++|..++......+++++++++++ ...||+|.|++.|+.+
T Consensus 906 IGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrA 985 (1164)
T PTZ00112 906 IAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKA 985 (1164)
T ss_pred EEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHH
Confidence 788875 3567789999987 4999999999999999999986555689999999988 5689999999999999
Q ss_pred HHhhCCCCCCHHHHHHHhCCCChHHHHHHHhc-CCHHH--HHHHHHHHHHc---CCCHHHHHHHHHHHHH
Q psy17903 243 ARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV-DSFQV--LEKYIEDLILE---AYSATQLFDQFHDIVM 306 (355)
Q Consensus 243 ~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~-~~~~~--~~~~l~~l~~~---g~~~~~i~~~l~~~~~ 306 (355)
....++..|+.++|.++......+.+.+.+.. ....+ +..++..+... +.....|+..+...+.
T Consensus 986 gEikegskVT~eHVrkAleeiE~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce 1055 (1164)
T PTZ00112 986 FENKRGQKIVPRDITEATNQLFDSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVE 1055 (1164)
T ss_pred HhhcCCCccCHHHHHHHHHHHHhhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHH
Confidence 88777778999999998876655555555543 11111 11222222221 3556667776666665
No 85
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.88 E-value=4.1e-20 Score=167.93 Aligned_cols=254 Identities=14% Similarity=0.087 Sum_probs=204.9
Q ss_pred HHHHHHHHhcCC-ccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-HHHHHHHH
Q psy17903 82 TMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-AAQAALRR 159 (355)
Q Consensus 82 la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-~~~~~Ll~ 159 (355)
.+..+++....+ ..+.+++.+++.+. ..+.+. ......+..+ ++++|+|++++.+.. ...+.|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~l~---~~~~~~slf~---------~~kliii~~~~~~~~~~~~~~L~~ 69 (302)
T TIGR01128 3 AADAIRAAALAQGFDEFNVFRIDGEEF-DWNQLL---EEAQTLPLFS---------ERRLVELRNPEGKPGAKGLKALEE 69 (302)
T ss_pred HHHHHHHHHHhCCCchheeeeeccCCC-CHHHHH---HHhhccCccc---------CCeEEEEECCCCCCCHHHHHHHHH
Confidence 345555555433 33567788887653 333332 2322233322 567999999999864 56789999
Q ss_pred HhhhccCCccEEEEecCCcc---cccccc--CCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHH
Q psy17903 160 TMEKETKSTRFCLICNYVSC---IIQPLT--SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRR 234 (355)
Q Consensus 160 ~le~~~~~~~~Il~~~~~~~---l~~~l~--sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~ 234 (355)
++++++.++++|+.++..++ +.+.+. ++|..+.|.+++..++..|+...+++.|+.+++++++.++..++||++.
T Consensus 70 ~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~ 149 (302)
T TIGR01128 70 YLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLA 149 (302)
T ss_pred HHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHH
Confidence 99999888888888875432 222333 4999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----
Q psy17903 235 AITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS---- 307 (355)
Q Consensus 235 ~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~---- 307 (355)
+.+++++++.+.+++.||.++|..++.......+++++++ ++...+...++.+...|.++..++..+.++++.
T Consensus 150 l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~~ 229 (302)
T TIGR01128 150 IAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQL 229 (302)
T ss_pred HHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999987778999999999998888889999998 899999999999999999998888877765542
Q ss_pred ------------------------------cCCCCHHHHHHHHHHHHHHHHHhh-CC-CChHHHHHHHHHHHH
Q psy17903 308 ------------------------------ASSLSDKQKALILEKLAECNARLQ-DG-ASEYIQILDLGSIVI 348 (355)
Q Consensus 308 ------------------------------~~~~~~~~~~~i~~~l~~~~~~l~-~g-~~~~~~l~~~~~~~~ 348 (355)
.+.++...+..++..|.++|..+| +| .+..+.||.++.++|
T Consensus 230 k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 230 KRLAQQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQELAEADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred HHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 245778888899999999999999 46 799999999999886
No 86
>PRK08727 hypothetical protein; Validated
Probab=99.88 E-value=6.2e-21 Score=165.86 Aligned_cols=212 Identities=17% Similarity=0.242 Sum_probs=151.8
Q ss_pred CCccccccCCC-CCCcccccH-HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc
Q psy17903 32 PVPWVEKYRPK-TIDDVIEQQ-EVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (355)
Q Consensus 32 ~~~~~~k~~p~-~~~~~vg~~-~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 109 (355)
|.++--.++|. +|+.+++.+ ..+..+.....+.....++|+||+|+|||+++.++++++..... .+..++..+.
T Consensus 5 Ql~l~~~~~~~~~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~--~~~y~~~~~~-- 80 (233)
T PRK08727 5 QLPLALRYPSDQRFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGR--SSAYLPLQAA-- 80 (233)
T ss_pred CccccCCCCCcCChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--cEEEEeHHHh--
Confidence 66676666665 799887654 44555555544333334999999999999999999998755433 3334433221
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHhhhcc-CCccEEEEecCC-c---cccc
Q psy17903 110 IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT--HAAQAALRRTMEKET-KSTRFCLICNYV-S---CIIQ 182 (355)
Q Consensus 110 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~-~~~~~Il~~~~~-~---~l~~ 182 (355)
...+...+..+. ...+|+|||++.+. ...+..+..+++... ....+|++++.+ . .+.+
T Consensus 81 ~~~~~~~~~~l~---------------~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 81 AGRLRDALEALE---------------GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred hhhHHHHHHHHh---------------cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhH
Confidence 111222222221 22399999999986 344566777665432 234577777743 3 3468
Q ss_pred cccCC---eeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH--hhCCCCCCHHHHH
Q psy17903 183 PLTSR---CSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR--LKGGEGIVNEDVL 257 (355)
Q Consensus 183 ~l~sr---~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~--~~~~~~It~~~v~ 257 (355)
.++|| |..+.|++|+.+++.+++++++...++.++++++++|++.++||+|.+++.|+.+.. ...+..||.+.++
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~ 225 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLR 225 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 99999 779999999999999999999999999999999999999999999999999998763 2345689999998
Q ss_pred HHhCC
Q psy17903 258 EVTGV 262 (355)
Q Consensus 258 ~~~~~ 262 (355)
+++..
T Consensus 226 ~~l~~ 230 (233)
T PRK08727 226 RVLEE 230 (233)
T ss_pred HHHhh
Confidence 87743
No 87
>PRK06893 DNA replication initiation factor; Validated
Probab=99.88 E-value=4.2e-21 Score=166.57 Aligned_cols=211 Identities=15% Similarity=0.212 Sum_probs=145.7
Q ss_pred CCccccccC-CCCCCcccccHHHH--HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc
Q psy17903 32 PVPWVEKYR-PKTIDDVIEQQEVV--SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (355)
Q Consensus 32 ~~~~~~k~~-p~~~~~~vg~~~~~--~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 108 (355)
|.++--.++ +.+|++++++++.. ..+.+.......+.++||||+|+|||++++++++++.....+..++..+.....
T Consensus 2 Ql~l~~~~~~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~ 81 (229)
T PRK06893 2 QLPLPIHQIDDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF 81 (229)
T ss_pred CcccCCCCCCcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh
Confidence 344433333 45899999766432 333333333334558999999999999999999997544333333333321111
Q ss_pred chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHhhhccC--CccEEEEecCC-cc---c
Q psy17903 109 GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKETK--STRFCLICNYV-SC---I 180 (355)
Q Consensus 109 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~--~~~~Il~~~~~-~~---l 180 (355)
. ...+..+. +..+|+|||++.+.. ..+..|..+++.... ..++|++++.. .. .
T Consensus 82 ~----~~~~~~~~---------------~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~ 142 (229)
T PRK06893 82 S----PAVLENLE---------------QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIK 142 (229)
T ss_pred h----HHHHhhcc---------------cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHcccc
Confidence 1 11111111 234999999998853 334566666654332 33455666643 22 4
Q ss_pred cccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh--hCCCCCCHHH
Q psy17903 181 IQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL--KGGEGIVNED 255 (355)
Q Consensus 181 ~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~--~~~~~It~~~ 255 (355)
.+.++||+. .+.+++|+.++...++++.+...++.++++++++|++.++||+|.+.+.++.+... ..+..||.+.
T Consensus 143 ~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~ 222 (229)
T PRK06893 143 LPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIPF 222 (229)
T ss_pred chhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHHH
Confidence 488999987 89999999999999999999999999999999999999999999999999988543 2456799999
Q ss_pred HHHHhC
Q psy17903 256 VLEVTG 261 (355)
Q Consensus 256 v~~~~~ 261 (355)
+++++.
T Consensus 223 v~~~L~ 228 (229)
T PRK06893 223 VKEILG 228 (229)
T ss_pred HHHHhc
Confidence 988764
No 88
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=5.6e-21 Score=185.03 Aligned_cols=211 Identities=20% Similarity=0.286 Sum_probs=138.0
Q ss_pred CCCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-----EEEECCCCCCHHHHHHHHHHHhcCCccc-ccee-e
Q psy17903 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-----FLFYGPPGTGKTSTMIAACHQLFGDMYR-ERIL-E 101 (355)
Q Consensus 29 ~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-----~ll~Gp~G~GKt~la~~l~~~l~~~~~~-~~~~-~ 101 (355)
.+...||++||||+++++++||++.+..+..++.....+. ++|+||+|+|||++++.+++.+...... .+.+ .
T Consensus 68 ~~~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~ 147 (637)
T TIGR00602 68 LDGNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLP 147 (637)
T ss_pred ccccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhh
Confidence 3456799999999999999999999999999997654332 9999999999999999999987542211 0100 0
Q ss_pred ecCCC---------------ccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH---HHHHHHH--Hh
Q psy17903 102 LNASD---------------DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA---AQAALRR--TM 161 (355)
Q Consensus 102 ~~~~~---------------~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~---~~~~Ll~--~l 161 (355)
....+ ....+.+...+...... .. ... +....+++||+|||++.+... .+..++. +.
T Consensus 148 ~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~-~~-~~g-~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~ 224 (637)
T TIGR00602 148 DFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNK-LQ-MLG-DDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYV 224 (637)
T ss_pred cccccccccchhhhhccccccchHHHHHHHHHHHHhh-hc-ccc-cccCCceeEEEeecchhhchhhHHHHHHHHHHHhh
Confidence 00000 01122222222221110 00 000 001125679999999776542 2333333 33
Q ss_pred hhccCCccEEEEecCC-c-------c-------ccccccC--CeeeEEecCCCHHHHHHHHHHHHHHcCCC------C-C
Q psy17903 162 EKETKSTRFCLICNYV-S-------C-------IIQPLTS--RCSKFRFKPLAENTMLTRLQYICEQESVM------C-D 217 (355)
Q Consensus 162 e~~~~~~~~Il~~~~~-~-------~-------l~~~l~s--r~~~i~~~~~~~~~~~~~l~~~~~~~~~~------~-~ 217 (355)
+. ..+.+|+++++. . . +.+++.+ |+..|.|.|+...++.+.|..++..++.. + +
T Consensus 225 e~--~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~ 302 (637)
T TIGR00602 225 SI--GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPK 302 (637)
T ss_pred cC--CCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCC
Confidence 32 234455555421 1 1 2267876 55689999999999999999999876432 2 4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 218 FKALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 218 ~~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
+++++.|+..++||+|.|++.||.++.
T Consensus 303 ~~~l~~I~~~s~GDiRsAIn~LQf~~~ 329 (637)
T TIGR00602 303 KTSVELLCQGCSGDIRSAINSLQFSSS 329 (637)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 689999999999999999999998754
No 89
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.87 E-value=2.6e-19 Score=166.99 Aligned_cols=238 Identities=18% Similarity=0.208 Sum_probs=158.6
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhc----CCCCeEEEECCCCCCHHHHHHHHHHHhcCCc----cccceeeecC
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG----ADLPHFLFYGPPGTGKTSTMIAACHQLFGDM----YRERILELNA 104 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~----~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~ 104 (355)
..+...|.|. +++|+++.++.|..++.. +..++++|+||||+|||++++.+++.+.... ....++++|+
T Consensus 6 ~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 6 DLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred hhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 4567889986 689999999888888753 3444599999999999999999999875321 1256788888
Q ss_pred CCccchH-HHHHHHHHHHH--hhccCCC-C---------C-CCCCCCcEEEEEeCCCCCCHHH---HHHHHHH--hhhcc
Q psy17903 105 SDDRGIQ-VIRDKVKTFAQ--QTASGFN-Q---------D-GKPCPPFKIVILDEADSMTHAA---QAALRRT--MEKET 165 (355)
Q Consensus 105 ~~~~~~~-~i~~~i~~~~~--~~~~~~~-~---------~-~~~~~~~~vliiDe~d~l~~~~---~~~Ll~~--le~~~ 165 (355)
....... .+......+.. ....... . . -.......+|||||+|.+.... ...|.+. ..+.+
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~ 162 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLD 162 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCC
Confidence 7654432 22223333211 0000000 0 0 0001134589999999995332 2334433 12222
Q ss_pred -CCccEEEEecCCc---cccccccCCee--eEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH---HcCCCHHH
Q psy17903 166 -KSTRFCLICNYVS---CIIQPLTSRCS--KFRFKPLAENTMLTRLQYICEQ--ESVMCDFKALETLVE---TSGGDMRR 234 (355)
Q Consensus 166 -~~~~~Il~~~~~~---~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~---~~~g~~r~ 234 (355)
..+.+|+++|.+. .+.+.+.+|+. .+.|+|++.+++.++++.+++. .+..+++++++.++. .+.||+|.
T Consensus 163 ~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~ 242 (365)
T TIGR02928 163 NAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARK 242 (365)
T ss_pred CCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHH
Confidence 4577888888764 46777888874 7999999999999999999863 233478887776554 45799999
Q ss_pred HHHHHHHHHHhh---CCCCCCHHHHHHHhCCCChHHHHHHHh
Q psy17903 235 AITCLQSCARLK---GGEGIVNEDVLEVTGVIPNPWIEKLLK 273 (355)
Q Consensus 235 ~~~~l~~~~~~~---~~~~It~~~v~~~~~~~~~~~~~~l~~ 273 (355)
+++.++.+...+ +...||.++|.++......+...+.+.
T Consensus 243 al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~~~~~~~~i~ 284 (365)
T TIGR02928 243 AIDLLRVAGEIAEREGAERVTEDHVEKAQEKIEKDRLLELIR 284 (365)
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887655 346799999998877664444333343
No 90
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.86 E-value=4e-20 Score=160.86 Aligned_cols=200 Identities=17% Similarity=0.236 Sum_probs=151.0
Q ss_pred CCCCCCccc--ccHHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH
Q psy17903 40 RPKTIDDVI--EQQEVVSVLKKCLSGA-DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK 116 (355)
Q Consensus 40 ~p~~~~~~v--g~~~~~~~l~~~l~~~-~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 116 (355)
+|.+|++++ ++..++..++.+.... ...+++|+||+|+|||++++++++....... .++.+++.... ..
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~--~~~~i~~~~~~------~~ 84 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGR--NARYLDAASPL------LA 84 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC--cEEEEehHHhH------HH
Confidence 455799988 3467778888887743 2335999999999999999999998754332 45556654321 11
Q ss_pred HHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccC--CccEEEEecCCc---cccccccCCe---
Q psy17903 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETK--STRFCLICNYVS---CIIQPLTSRC--- 188 (355)
Q Consensus 117 i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~---~l~~~l~sr~--- 188 (355)
+. + . .+..+|||||+|.+....+..|+.+++.... ..++|++++... .+.+.+.+|+
T Consensus 85 ~~-~--~------------~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~ 149 (227)
T PRK08903 85 FD-F--D------------PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWG 149 (227)
T ss_pred Hh-h--c------------ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcC
Confidence 10 0 0 0234999999999998888899888875432 233555555332 2456677785
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHhCC
Q psy17903 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVTGV 262 (355)
Q Consensus 189 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~~~It~~~v~~~~~~ 262 (355)
..+++++|+.++...++...+.+.++.++++++++|++.++||+|.+.+.++.+..++ .+..||.+.+.+++..
T Consensus 150 ~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~~~~l~~ 225 (227)
T PRK08903 150 LVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLLREMLAQ 225 (227)
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Confidence 6899999999999999999999999999999999999999999999999999887655 5678999999998763
No 91
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=1.7e-20 Score=166.27 Aligned_cols=190 Identities=18% Similarity=0.216 Sum_probs=136.7
Q ss_pred CCcccccHHHHHHHHHHHh----------c-----CCCCeEEEECCCCCCHHHHHHHHHHHhcCC--ccccceeeecCCC
Q psy17903 44 IDDVIEQQEVVSVLKKCLS----------G-----ADLPHFLFYGPPGTGKTSTMIAACHQLFGD--MYRERILELNASD 106 (355)
Q Consensus 44 ~~~~vg~~~~~~~l~~~l~----------~-----~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~--~~~~~~~~~~~~~ 106 (355)
+++++|.+.++..+++.+. . +...|++|+||||||||++|+.+++.+... .....++++++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 5789999999887765431 1 133469999999999999999999987431 1223566666654
Q ss_pred ccch--HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC--------HHHHHHHHHHhhhccCCccEEEEecC
Q psy17903 107 DRGI--QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT--------HAAQAALRRTMEKETKSTRFCLICNY 176 (355)
Q Consensus 107 ~~~~--~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------~~~~~~Ll~~le~~~~~~~~Il~~~~ 176 (355)
..+. ......+....... ...||||||+|.|. .+.++.|++.+++....+++|+++..
T Consensus 85 l~~~~~g~~~~~~~~~~~~a------------~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~ 152 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKA------------LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYS 152 (261)
T ss_pred hhhhhccchHHHHHHHHHhc------------cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCc
Confidence 2211 00011111111111 12399999999986 34678899999988777777777653
Q ss_pred C-----ccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----------cCCCHHHHHHHHH
Q psy17903 177 V-----SCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET----------SGGDMRRAITCLQ 240 (355)
Q Consensus 177 ~-----~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----------~~g~~r~~~~~l~ 240 (355)
. ..+.|++++|+. .++|++++.+++.++++..+...+..++++++..+.+. +.||.|.+.|.++
T Consensus 153 ~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e 232 (261)
T TIGR02881 153 DEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIE 232 (261)
T ss_pred chhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 2 235789999994 79999999999999999999999999999999888543 3699999999999
Q ss_pred HHHHh
Q psy17903 241 SCARL 245 (355)
Q Consensus 241 ~~~~~ 245 (355)
.+...
T Consensus 233 ~a~~~ 237 (261)
T TIGR02881 233 KAIRR 237 (261)
T ss_pred HHHHH
Confidence 86653
No 92
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.86 E-value=3.4e-19 Score=167.91 Aligned_cols=290 Identities=19% Similarity=0.260 Sum_probs=186.6
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHh----cCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS----GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~----~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
..+|...|.| +.++|++..++.|...+. ++..++++|+||||+|||++++.+++.+........++++|+...
T Consensus 20 ~~~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~ 96 (394)
T PRK00411 20 EEVLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQID 96 (394)
T ss_pred hhhCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcC
Confidence 3455556666 468899999888887763 334456999999999999999999998855433456788888654
Q ss_pred cchHHH-HHHHHHHHHhhc--cCCCCC---------CCCCCCcEEEEEeCCCCCC----HHHHHHHHHHhhhccC-CccE
Q psy17903 108 RGIQVI-RDKVKTFAQQTA--SGFNQD---------GKPCPPFKIVILDEADSMT----HAAQAALRRTMEKETK-STRF 170 (355)
Q Consensus 108 ~~~~~i-~~~i~~~~~~~~--~~~~~~---------~~~~~~~~vliiDe~d~l~----~~~~~~Ll~~le~~~~-~~~~ 170 (355)
.....+ ......+..... .+.... -.......+|+|||+|.+. .+....|++.++..+. .+.+
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~v 176 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGV 176 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEE
Confidence 433222 222222211000 000000 0000123589999999986 3345555565554333 5668
Q ss_pred EEEecCCc---cccccccCCee--eEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---CCCHHHHHHHHH
Q psy17903 171 CLICNYVS---CIIQPLTSRCS--KFRFKPLAENTMLTRLQYICEQE--SVMCDFKALETLVETS---GGDMRRAITCLQ 240 (355)
Q Consensus 171 Il~~~~~~---~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~---~g~~r~~~~~l~ 240 (355)
|++++... .+.+.+++|+. .+.|++++.+++.++++.+++.. ...+++++++.+++.+ .||+|.+++.+.
T Consensus 177 I~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~ 256 (394)
T PRK00411 177 IGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLR 256 (394)
T ss_pred EEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 88888653 35566777764 78999999999999999998653 3368999999998887 899999999998
Q ss_pred HHHHhh---CCCCCCHHHHHHHhCCCChHHHHHHHhc--CCHHHHHHHHHHHHH---cCCCHHHHHHHHHHHHHhcCCCC
Q psy17903 241 SCARLK---GGEGIVNEDVLEVTGVIPNPWIEKLLKV--DSFQVLEKYIEDLIL---EAYSATQLFDQFHDIVMSASSLS 312 (355)
Q Consensus 241 ~~~~~~---~~~~It~~~v~~~~~~~~~~~~~~l~~~--~~~~~~~~~l~~l~~---~g~~~~~i~~~l~~~~~~~~~~~ 312 (355)
.++..+ +...|+.+++.+++...........+.. .....+...+..+.. ...+..+++..+...+... +.+
T Consensus 257 ~a~~~a~~~~~~~I~~~~v~~a~~~~~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~-~~~ 335 (394)
T PRK00411 257 RAGLIAEREGSRKVTEEDVRKAYEKSEIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEEL-GYE 335 (394)
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHc-CCC
Confidence 876655 4467999999998877655454555543 122222233333322 3457778888887777543 343
Q ss_pred H---HHHHHHHHHHHH
Q psy17903 313 D---KQKALILEKLAE 325 (355)
Q Consensus 313 ~---~~~~~i~~~l~~ 325 (355)
+ ......+..|..
T Consensus 336 ~~~~~~~~~~l~~L~~ 351 (394)
T PRK00411 336 PRTHTRFYEYINKLDM 351 (394)
T ss_pred cCcHHHHHHHHHHHHh
Confidence 3 444444444444
No 93
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.86 E-value=9.6e-21 Score=159.02 Aligned_cols=207 Identities=25% Similarity=0.309 Sum_probs=150.4
Q ss_pred cccCCCCCCcccccHHHHHH---HHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 37 EKYRPKTIDDVIEQQEVVSV---LKKCLSG------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 37 ~k~~p~~~~~~vg~~~~~~~---l~~~l~~------~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
+-..-.+|++++||+.++.. |..++++ ..+.++|||||||+|||++|++++++. +.+++.+++...
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-----kvp~l~vkat~l 187 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-----KVPLLLVKATEL 187 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-----CCceEEechHHH
Confidence 44445589999999988854 4455544 345569999999999999999999997 556777777654
Q ss_pred cch------HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH------------HHHHHHHHHhhhc--cCC
Q psy17903 108 RGI------QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH------------AAQAALRRTMEKE--TKS 167 (355)
Q Consensus 108 ~~~------~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~~Ll~~le~~--~~~ 167 (355)
.+. ..+++........ .|| |+||||+|.+.- +..|+|+.-|+.. ...
T Consensus 188 iGehVGdgar~Ihely~rA~~~---------aPc----ivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG 254 (368)
T COG1223 188 IGEHVGDGARRIHELYERARKA---------APC----IVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG 254 (368)
T ss_pred HHHHhhhHHHHHHHHHHHHHhc---------CCe----EEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc
Confidence 332 2344433333332 233 999999998843 3457787777643 356
Q ss_pred ccEEEEecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Q psy17903 168 TRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSCARL 245 (355)
Q Consensus 168 ~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~~ 245 (355)
++.|.+||++..++++++||+. .|+|.-|+.++...+++..+++-.++++.. +++++..+.| +-|.+..-+-+.+..
T Consensus 255 VvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK~aLh 333 (368)
T COG1223 255 VVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLKTALH 333 (368)
T ss_pred eEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 8899999999999999999998 899999999999999999999887777666 7888887755 444444333222221
Q ss_pred ----hCCCCCCHHHHHHHhCC
Q psy17903 246 ----KGGEGIVNEDVLEVTGV 262 (355)
Q Consensus 246 ----~~~~~It~~~v~~~~~~ 262 (355)
-+...|+.++++.++..
T Consensus 334 ~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 334 RAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred HHHHhchhhhhHHHHHHHHHh
Confidence 15678999998887754
No 94
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.85 E-value=5.5e-20 Score=159.98 Aligned_cols=201 Identities=18% Similarity=0.246 Sum_probs=147.9
Q ss_pred CCCCCcccc--cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHH
Q psy17903 41 PKTIDDVIE--QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK 118 (355)
Q Consensus 41 p~~~~~~vg--~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 118 (355)
+.+|+++++ ++.+++.+++++......+++|+||+|||||++|+++++...... ..++.+++...... ....+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~--~~~~~i~~~~~~~~--~~~~~~ 86 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEERG--KSAIYLPLAELAQA--DPEVLE 86 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhcC--CcEEEEeHHHHHHh--HHHHHh
Confidence 446888873 667899999998766666699999999999999999999875432 24556665442211 111111
Q ss_pred HHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHH--HHHHHHHhhhcc-CCccEEEEecCC-cc--cc-ccccCCe---
Q psy17903 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA--QAALRRTMEKET-KSTRFCLICNYV-SC--II-QPLTSRC--- 188 (355)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~--~~~Ll~~le~~~-~~~~~Il~~~~~-~~--l~-~~l~sr~--- 188 (355)
.+. +.++|+|||+|.+.... ++.|...++... ....+|++++.. .. .. +.+.+|+
T Consensus 87 ~~~---------------~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~ 151 (226)
T TIGR03420 87 GLE---------------QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWG 151 (226)
T ss_pred hcc---------------cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcC
Confidence 100 22499999999997643 777877776532 224667777643 22 22 6677775
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHh
Q psy17903 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVT 260 (355)
Q Consensus 189 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~~~It~~~v~~~~ 260 (355)
..+.+++++.++...+++..+.+.++.+++++++.|++.++||+|.+.+.++.+...+ .++.||.+.+.+++
T Consensus 152 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~~~~~ 225 (226)
T TIGR03420 152 LVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFVKEVL 225 (226)
T ss_pred eeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHh
Confidence 4899999999999999999988889999999999999999999999999998876533 56679999988875
No 95
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.85 E-value=1.7e-19 Score=176.68 Aligned_cols=231 Identities=18% Similarity=0.221 Sum_probs=165.2
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCC-----ccccceeeecCCCc
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-----MYRERILELNASDD 107 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~-----~~~~~~~~~~~~~~ 107 (355)
.+..+.|||.+|++++|++..+..+.+.+......+++|+||+|||||++|+.+++..... ..+..++.+++...
T Consensus 142 ~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 142 KSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred hHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 5567789999999999999999988888877766679999999999999999998876321 01346788887653
Q ss_pred c-chHHHHHH------------HH-HHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc--------
Q psy17903 108 R-GIQVIRDK------------VK-TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------- 165 (355)
Q Consensus 108 ~-~~~~i~~~------------i~-~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------- 165 (355)
. ....+... .. .+...+........-.....++|||||++.|....|+.|++.|++..
T Consensus 222 ~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~ 301 (615)
T TIGR02903 222 RWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYY 301 (615)
T ss_pred cCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeeccee
Confidence 2 11111100 00 01110100000000001234599999999999999999999997632
Q ss_pred --------------------CCccEEEEe-cCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Q psy17903 166 --------------------KSTRFCLIC-NYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETL 224 (355)
Q Consensus 166 --------------------~~~~~Il~~-~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l 224 (355)
..+++|.++ +++..+.+++++||..+.|.+++.+++..++++.+.+.++.+++++++.|
T Consensus 302 ~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L 381 (615)
T TIGR02903 302 DPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELI 381 (615)
T ss_pred ccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 113344434 34667889999999999999999999999999999988888999999999
Q ss_pred HHHcCCCHHHHHHHHHHHHHhh-----------CCCCCCHHHHHHHhCCCC
Q psy17903 225 VETSGGDMRRAITCLQSCARLK-----------GGEGIVNEDVLEVTGVIP 264 (355)
Q Consensus 225 ~~~~~g~~r~~~~~l~~~~~~~-----------~~~~It~~~v~~~~~~~~ 264 (355)
.+++ ++.|++++.|+.+..+. ....|+.+++.++++...
T Consensus 382 ~~ys-~~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 382 ARYT-IEGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHCC-CcHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 8876 47799999997765442 112589999999987663
No 96
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.1e-19 Score=157.87 Aligned_cols=219 Identities=20% Similarity=0.254 Sum_probs=154.2
Q ss_pred CCCCCCCCCCccccccCCCCCCcccccHHHHHHHHHHHhc-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHh
Q psy17903 24 TSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------A-DLPH-FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 24 ~~~~~~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKt~la~~l~~~l 90 (355)
|+-..+.-..+-.++-.-.+++++.|-+++++.|+..+.- | .+|. +|+|||||||||.+|+++|++.
T Consensus 130 p~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T 209 (406)
T COG1222 130 PPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT 209 (406)
T ss_pred CCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc
Confidence 3333444445556664555899999999999999998842 2 3333 9999999999999999999997
Q ss_pred cCCccccceeeecCCCc------cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HH
Q psy17903 91 FGDMYRERILELNASDD------RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AA 153 (355)
Q Consensus 91 ~~~~~~~~~~~~~~~~~------~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~ 153 (355)
+..|+.+.+++. .+...+++.+.-.... .|+ ||||||+|.+.. +.
T Consensus 210 -----~AtFIrvvgSElVqKYiGEGaRlVRelF~lArek---------aPs----IIFiDEIDAIg~kR~d~~t~gDrEV 271 (406)
T COG1222 210 -----DATFIRVVGSELVQKYIGEGARLVRELFELAREK---------APS----IIFIDEIDAIGAKRFDSGTSGDREV 271 (406)
T ss_pred -----CceEEEeccHHHHHHHhccchHHHHHHHHHHhhc---------CCe----EEEEechhhhhcccccCCCCchHHH
Confidence 446677766652 1223344333322222 222 999999998843 45
Q ss_pred HHHHHHHhhh-----ccCCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q psy17903 154 QAALRRTMEK-----ETKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLV 225 (355)
Q Consensus 154 ~~~Ll~~le~-----~~~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 225 (355)
|..++.+|.+ +..++.+|++||.++.++|+|.+.++ .|+|+.|+.+....+++-++++.++. ++-.++.|+
T Consensus 272 QRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la 350 (406)
T COG1222 272 QRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLA 350 (406)
T ss_pred HHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHH
Confidence 6667777653 56789999999999999999999887 79999999999999999988775542 223467777
Q ss_pred HHcCCCHH-HHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 226 ETSGGDMR-RAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 226 ~~~~g~~r-~~~~~l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
..++|--+ .+...+..+..++ ....||.+|+.++..
T Consensus 351 ~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~ 390 (406)
T COG1222 351 RLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVE 390 (406)
T ss_pred HhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHH
Confidence 77755333 3333333333333 667899999988664
No 97
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.84 E-value=3.2e-19 Score=153.50 Aligned_cols=161 Identities=11% Similarity=0.117 Sum_probs=123.7
Q ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc-----------------ccceeeecCC-CccchHHHHHHHHHHHHhhc
Q psy17903 65 DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-----------------RERILELNAS-DDRGIQVIRDKVKTFAQQTA 125 (355)
Q Consensus 65 ~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~-----------------~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~~ 125 (355)
+.+| +||+||+|+||..+|.++++.+.+... ..++..+... ...+++.+++....+...+.
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 4567 999999999999999999999986421 1123332222 23567888887776654331
Q ss_pred cCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeeeEEecCC---------
Q psy17903 126 SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPL--------- 196 (355)
Q Consensus 126 ~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~--------- 196 (355)
.. +++||+||+++|.|+.++.|+|+++||+|+.+++||++|++++.++++++|||+.+.|+++
T Consensus 85 e~--------~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~ 156 (261)
T PRK05818 85 ES--------NGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVE 156 (261)
T ss_pred hc--------CCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccc
Confidence 11 1578999999999999999999999999999999999999999999999999999999888
Q ss_pred -CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy17903 197 -AENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242 (355)
Q Consensus 197 -~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 242 (355)
++.++...+... ..+++ .++..++|+..+++..++.+
T Consensus 157 ~~~~~i~~~L~~~-----~~~d~----~i~~~a~g~~~~a~~l~~~l 194 (261)
T PRK05818 157 SNDRYFQYILLSF-----YSVDE----QLQAYNNGSFSKLKNIIETL 194 (261)
T ss_pred cChHHHHHHHHHc-----cCccH----HHHHHcCCCHHHHHHHHHHH
Confidence 555555554432 12343 56667899999999999854
No 98
>PRK05642 DNA replication initiation factor; Validated
Probab=99.83 E-value=7e-19 Score=153.02 Aligned_cols=212 Identities=15% Similarity=0.188 Sum_probs=148.9
Q ss_pred CCCccccccCCC-CCCccc-cc-HHHHHHHHHHHhcC---CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC
Q psy17903 31 KPVPWVEKYRPK-TIDDVI-EQ-QEVVSVLKKCLSGA---DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (355)
Q Consensus 31 ~~~~~~~k~~p~-~~~~~v-g~-~~~~~~l~~~l~~~---~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 104 (355)
.|.++--.+.|. +|+.++ |. ..++..+.++.... ..+.++|+||+|+|||++++++++++.... ..+++++.
T Consensus 4 ~Ql~l~~~~~~~~tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~--~~v~y~~~ 81 (234)
T PRK05642 4 IQLPLGVRLRDDATFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRG--EPAVYLPL 81 (234)
T ss_pred cccccCCCCCCcccccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC--CcEEEeeH
Confidence 456665556654 799887 33 23344455554421 123499999999999999999998875432 24455554
Q ss_pred CCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHhhhcc-CCccEEEEecC-C---
Q psy17903 105 SDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKET-KSTRFCLICNY-V--- 177 (355)
Q Consensus 105 ~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~-~~~~~Il~~~~-~--- 177 (355)
.+... .....+..+. +..+|+|||++.+.. ..+..|..+++... .+..+|++++. +
T Consensus 82 ~~~~~--~~~~~~~~~~---------------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l 144 (234)
T PRK05642 82 AELLD--RGPELLDNLE---------------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPREL 144 (234)
T ss_pred HHHHh--hhHHHHHhhh---------------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHc
Confidence 33211 0111111111 123899999998853 44566777776433 23556667764 2
Q ss_pred ccccccccCCe---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCC
Q psy17903 178 SCIIQPLTSRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIV 252 (355)
Q Consensus 178 ~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~~~It 252 (355)
....+.++||+ ..+.+.+|+.++...+++..+...++.++++++++|++.++||+|.+.+.++.+...+ .+..||
T Consensus 145 ~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it 224 (234)
T PRK05642 145 PIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLT 224 (234)
T ss_pred CccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCC
Confidence 22468999998 6899999999999999998888889999999999999999999999999999987544 457899
Q ss_pred HHHHHHHhC
Q psy17903 253 NEDVLEVTG 261 (355)
Q Consensus 253 ~~~v~~~~~ 261 (355)
.+.+++++.
T Consensus 225 ~~~~~~~L~ 233 (234)
T PRK05642 225 IPFLKETLG 233 (234)
T ss_pred HHHHHHHhc
Confidence 999988764
No 99
>PRK06620 hypothetical protein; Validated
Probab=99.82 E-value=7.8e-19 Score=150.20 Aligned_cols=186 Identities=14% Similarity=0.138 Sum_probs=131.2
Q ss_pred CCCccc-c--cHHHHHHHHHHHhcC--CC--CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH
Q psy17903 43 TIDDVI-E--QQEVVSVLKKCLSGA--DL--PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (355)
Q Consensus 43 ~~~~~v-g--~~~~~~~l~~~l~~~--~~--~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (355)
+|++++ | +..+...+..+.+.. +. +.++||||+|+|||++++++++.... .+ +..... .
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~--~~~~~~--~----- 79 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA-----YI--IKDIFF--N----- 79 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----EE--cchhhh--c-----
Confidence 466665 3 345677777777632 22 34999999999999999998887521 11 111100 0
Q ss_pred HHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecC-Ccc-ccccccCCee---e
Q psy17903 116 KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY-VSC-IIQPLTSRCS---K 190 (355)
Q Consensus 116 ~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~-~~~-l~~~l~sr~~---~ 190 (355)
..+.. ...+++|||+|.+.....-.+.+.+.+.. ..++++++. +.. -++.|+||+. .
T Consensus 80 --~~~~~--------------~~d~lliDdi~~~~~~~lf~l~N~~~e~g--~~ilits~~~p~~l~l~~L~SRl~~gl~ 141 (214)
T PRK06620 80 --EEILE--------------KYNAFIIEDIENWQEPALLHIFNIINEKQ--KYLLLTSSDKSRNFTLPDLSSRIKSVLS 141 (214)
T ss_pred --hhHHh--------------cCCEEEEeccccchHHHHHHHHHHHHhcC--CEEEEEcCCCccccchHHHHHHHhCCce
Confidence 01110 12389999999875443334444443332 245555543 222 1388999988 8
Q ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHh
Q psy17903 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVT 260 (355)
Q Consensus 191 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~~~It~~~v~~~~ 260 (355)
+.+++|+.+++..++++.+...++.++++++++|++.++||+|.+.+.|+.+..++ .+..||.+.+++++
T Consensus 142 ~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~~~~~~l 213 (214)
T PRK06620 142 ILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKITISLVKEVL 213 (214)
T ss_pred EeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 99999999999999999999899999999999999999999999999999986543 45679999888865
No 100
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1e-17 Score=153.73 Aligned_cols=270 Identities=20% Similarity=0.287 Sum_probs=184.6
Q ss_pred ccccccCCCCCCcccccHHHHHHHHHH----HhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc
Q psy17903 34 PWVEKYRPKTIDDVIEQQEVVSVLKKC----LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (355)
Q Consensus 34 ~~~~k~~p~~~~~~vg~~~~~~~l~~~----l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 109 (355)
.+.+-|-|.. +.+++..++.+... +.++.+.++++||++|||||++++.+.+++........++++||.....
T Consensus 9 vl~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t 85 (366)
T COG1474 9 VLLEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRT 85 (366)
T ss_pred ccCCCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCC
Confidence 3445666655 78888888776655 4566666699999999999999999999997765555589999987655
Q ss_pred hHHHHHHH-HHHHHhhccCCCCC---------CCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhh---ccCCccEEEEecC
Q psy17903 110 IQVIRDKV-KTFAQQTASGFNQD---------GKPCPPFKIVILDEADSMTHAAQAALRRTMEK---ETKSTRFCLICNY 176 (355)
Q Consensus 110 ~~~i~~~i-~~~~~~~~~~~~~~---------~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~---~~~~~~~Il~~~~ 176 (355)
...+...+ ..+...+..+.... -......-||++||+|.|....++.|+.++.. ....+.+|+++|+
T Consensus 86 ~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~ 165 (366)
T COG1474 86 PYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSND 165 (366)
T ss_pred HHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEecc
Confidence 54433332 22211111110000 00002445999999999987655555555543 3334567777776
Q ss_pred C---ccccccccCCee--eEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHH---HcCCCHHHHHHHHHHHHHhh
Q psy17903 177 V---SCIIQPLTSRCS--KFRFKPLAENTMLTRLQYICEQ--ESVMCDFKALETLVE---TSGGDMRRAITCLQSCARLK 246 (355)
Q Consensus 177 ~---~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~---~~~g~~r~~~~~l~~~~~~~ 246 (355)
. ..+.+.++|+.. .+.|+|++.+|+.+++..+++. ..-.+++++++.++. ..+||.|.++..|+.++..+
T Consensus 166 ~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiA 245 (366)
T COG1474 166 DKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIA 245 (366)
T ss_pred HHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHH
Confidence 5 346788888876 6889999999999999999885 234577877777664 45789999999999998887
Q ss_pred ---CCCCCCHHHHHHHhCCCChHHHHHHHhc-CCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhc
Q psy17903 247 ---GGEGIVNEDVLEVTGVIPNPWIEKLLKV-DSFQVLEKYIEDLIL--EAYSATQLFDQFHDIVMSA 308 (355)
Q Consensus 247 ---~~~~It~~~v~~~~~~~~~~~~~~l~~~-~~~~~~~~~l~~l~~--~g~~~~~i~~~l~~~~~~~ 308 (355)
+.+.++.+++..+..........+.++. ...+++. +..+.. ...+...++..+...+...
T Consensus 246 e~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~~~ki~--L~~i~~~~~~~~~~~~y~~y~~~~~~~ 311 (366)
T COG1474 246 EREGSRKVSEDHVREAQEEIERDVLEEVLKTLPLHQKIV--LLAIVELTVEISTGELYDVYESLCERL 311 (366)
T ss_pred HhhCCCCcCHHHHHHHHHHhhHHHHHHHHHcCCHhHHHH--HHHHHHhcCCCChHHHHHHHHHHHhhh
Confidence 5678999999999776666666666654 2222221 222221 5677778888877777664
No 101
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.82 E-value=2.9e-17 Score=150.44 Aligned_cols=281 Identities=19% Similarity=0.202 Sum_probs=213.7
Q ss_pred HHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCC
Q psy17903 56 VLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134 (355)
Q Consensus 56 ~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~ 134 (355)
.+...+.+++... +++||+.-.-....+..+......+.........+..+ .... ..+......+.++
T Consensus 5 ~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~s~~lF~------- 73 (334)
T COG1466 5 ELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRALADGFDENYSFFDDSE-LDWA---DLLSELESPSLFG------- 73 (334)
T ss_pred HHHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHhccchhhHHhhccccc-CCHH---HHHHHhhcccccc-------
Confidence 3445555553444 99999997777777777777765333333333322222 1222 2233333333332
Q ss_pred CCCcEEEEEeCCCCCC-HHHHHHHHHHhhhcc-CCccEEEEecCCcc---c---cccccCCeeeEEecCCCHHHHHHHHH
Q psy17903 135 CPPFKIVILDEADSMT-HAAQAALRRTMEKET-KSTRFCLICNYVSC---I---IQPLTSRCSKFRFKPLAENTMLTRLQ 206 (355)
Q Consensus 135 ~~~~~vliiDe~d~l~-~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~---l---~~~l~sr~~~i~~~~~~~~~~~~~l~ 206 (355)
++++++|+..+... .+....+.......+ ..+++++..+..++ . ...+.. +..+.+.+++..++.+|+.
T Consensus 74 --~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~-~~~~~~~~~~~~~l~~~i~ 150 (334)
T COG1466 74 --EKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAK-AVVVECKPLDEAELPQWIK 150 (334)
T ss_pred --CCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhcc-CceEecCCCCHHHHHHHHH
Confidence 55799999998875 444455555555555 55555555544332 2 333333 6689999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHH
Q psy17903 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKY 283 (355)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~ 283 (355)
..+++.|+.+++++++.++...+||++.+.+++++++.+++++.||.++|..++....+.++++++++ ++..++...
T Consensus 151 ~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~g~~~~a~~~ 230 (334)
T COG1466 151 KRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGDVKKALRL 230 (334)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999999999997779999999999999999999999998 999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHh----------------------------------cCCCCHHHHHHHHHHHHHHHHH
Q psy17903 284 IEDLILEAYSATQLFDQFHDIVMS----------------------------------ASSLSDKQKALILEKLAECNAR 329 (355)
Q Consensus 284 l~~l~~~g~~~~~i~~~l~~~~~~----------------------------------~~~~~~~~~~~i~~~l~~~~~~ 329 (355)
+++++.+|+.|..|+..+.++++. ..+++...+.++++.+.++|+.
T Consensus 231 l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~l~~~l~~l~~~d~~ 310 (334)
T COG1466 231 LRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQLLKALRLLAQLDYQ 310 (334)
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999988877662 1238999999999999999999
Q ss_pred hhCCC-ChHHHHHHHHHHHHHH
Q psy17903 330 LQDGA-SEYIQILDLGSIVIKA 350 (355)
Q Consensus 330 l~~g~-~~~~~l~~~~~~~~~~ 350 (355)
+|+|. ++.+.++.++..++..
T Consensus 311 ~K~~~~d~~~~l~~~l~~~~~~ 332 (334)
T COG1466 311 IKTGYGDPVWALELFLLRLLEL 332 (334)
T ss_pred HhcCCccchHHHHHHHHHHhhc
Confidence 99994 8889999999988753
No 102
>CHL00181 cbbX CbbX; Provisional
Probab=99.82 E-value=1.1e-18 Score=155.78 Aligned_cols=190 Identities=17% Similarity=0.181 Sum_probs=134.9
Q ss_pred CcccccHHHHHHHHHHHh----------cC-----CCCeEEEECCCCCCHHHHHHHHHHHhcCCc--cccceeeecCCCc
Q psy17903 45 DDVIEQQEVVSVLKKCLS----------GA-----DLPHFLFYGPPGTGKTSTMIAACHQLFGDM--YRERILELNASDD 107 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~----------~~-----~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~--~~~~~~~~~~~~~ 107 (355)
++++|.+.++++|.+++. .| ...|++|+||||||||++|+++++.+.... ....+++++..+.
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l 102 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDL 102 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHH
Confidence 378999999887766541 11 223599999999999999999999874321 1224666664431
Q ss_pred cchH--HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHhhhccCCccEEEEecC
Q psy17903 108 RGIQ--VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM---------THAAQAALRRTMEKETKSTRFCLICNY 176 (355)
Q Consensus 108 ~~~~--~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l---------~~~~~~~Ll~~le~~~~~~~~Il~~~~ 176 (355)
.+.- ............. .++||||||++.+ ..+.++.|+..|++...++++|++++.
T Consensus 103 ~~~~~g~~~~~~~~~l~~a------------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~ 170 (287)
T CHL00181 103 VGQYIGHTAPKTKEVLKKA------------MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYK 170 (287)
T ss_pred HHHHhccchHHHHHHHHHc------------cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 1100 0000011111111 2249999999987 456788999999988888888888753
Q ss_pred C--c---cccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------cCCCHHHHHHHHHHH
Q psy17903 177 V--S---CIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET--------SGGDMRRAITCLQSC 242 (355)
Q Consensus 177 ~--~---~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------~~g~~r~~~~~l~~~ 242 (355)
. . ...|++++|+. .+.|++++.+++.+++...+++.+..+++++...+... ..||.|.+.+.++++
T Consensus 171 ~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 171 DRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 2 1 23589999988 89999999999999999999999999999887776654 348999999999887
Q ss_pred HHhh
Q psy17903 243 ARLK 246 (355)
Q Consensus 243 ~~~~ 246 (355)
....
T Consensus 251 ~~~~ 254 (287)
T CHL00181 251 RMRQ 254 (287)
T ss_pred HHHH
Confidence 6543
No 103
>PRK09087 hypothetical protein; Validated
Probab=99.81 E-value=1.5e-18 Score=149.75 Aligned_cols=204 Identities=16% Similarity=0.165 Sum_probs=145.0
Q ss_pred CCCCccccccCCC-CCCcccc---cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC
Q psy17903 30 NKPVPWVEKYRPK-TIDDVIE---QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (355)
Q Consensus 30 ~~~~~~~~k~~p~-~~~~~vg---~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 105 (355)
..|.++--.+.|. +|++++. +..++..+.++.. ...+.++|+||+|+|||++++++++... ...++..
T Consensus 5 ~~Ql~l~~~~~~~~~~~~Fi~~~~N~~a~~~l~~~~~-~~~~~l~l~G~~GsGKThLl~~~~~~~~-------~~~i~~~ 76 (226)
T PRK09087 5 PEQLPLNFSHDPAYGRDDLLVTESNRAAVSLVDHWPN-WPSPVVVLAGPVGSGKTHLASIWREKSD-------ALLIHPN 76 (226)
T ss_pred CcceeeCCCCCCCCChhceeecCchHHHHHHHHhccc-CCCCeEEEECCCCCCHHHHHHHHHHhcC-------CEEecHH
Confidence 4566665555555 7999884 4456666666542 2234499999999999999999998741 1223221
Q ss_pred CccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccC-CccEEEEecCC----ccc
Q psy17903 106 DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETK-STRFCLICNYV----SCI 180 (355)
Q Consensus 106 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~----~~l 180 (355)
. ...+ .+.... ..+|+|||++.+.. .+..|..++..... ...+|++++.. ...
T Consensus 77 ~-~~~~----~~~~~~----------------~~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~ 134 (226)
T PRK09087 77 E-IGSD----AANAAA----------------EGPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLMTSRLWPSSWNVK 134 (226)
T ss_pred H-cchH----HHHhhh----------------cCeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEEECCCChHHhccc
Confidence 1 1111 111100 12899999998753 34556666643222 34566666643 224
Q ss_pred cccccCCe---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHH
Q psy17903 181 IQPLTSRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNED 255 (355)
Q Consensus 181 ~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~~~It~~~ 255 (355)
.+.++||+ ..+++++|+.+++..++++.++..++.++++++++|++.+.|+++.+...+.++..++ .+..||.+.
T Consensus 135 ~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~ 214 (226)
T PRK09087 135 LPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRAL 214 (226)
T ss_pred cccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 68899998 6999999999999999999999999999999999999999999999999888876555 467899999
Q ss_pred HHHHhCCC
Q psy17903 256 VLEVTGVI 263 (355)
Q Consensus 256 v~~~~~~~ 263 (355)
+++++...
T Consensus 215 ~~~~l~~~ 222 (226)
T PRK09087 215 AAEVLNEM 222 (226)
T ss_pred HHHHHHhh
Confidence 99988643
No 104
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.80 E-value=3e-18 Score=153.06 Aligned_cols=185 Identities=17% Similarity=0.199 Sum_probs=135.9
Q ss_pred cccccHHHHHHHHHHHh----------cCC-----CCeEEEECCCCCCHHHHHHHHHHHhcCCcc--ccceeeecCCCcc
Q psy17903 46 DVIEQQEVVSVLKKCLS----------GAD-----LPHFLFYGPPGTGKTSTMIAACHQLFGDMY--RERILELNASDDR 108 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~----------~~~-----~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~~~~~ 108 (355)
+++|.+++++.+..++. .|. ..|++|+||||||||++|+++++.+....+ ..+++.+++.+..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~ 102 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLV 102 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHh
Confidence 68999998888766431 111 125999999999999999999998754221 2346666653321
Q ss_pred c------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCC---------CHHHHHHHHHHhhhccCCccEEEE
Q psy17903 109 G------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM---------THAAQAALRRTMEKETKSTRFCLI 173 (355)
Q Consensus 109 ~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l---------~~~~~~~Ll~~le~~~~~~~~Il~ 173 (355)
+ ...+.+.+.. . ...+|||||++.| ..+.++.|+..|++....+++|++
T Consensus 103 ~~~~g~~~~~~~~~~~~----a------------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a 166 (284)
T TIGR02880 103 GQYIGHTAPKTKEILKR----A------------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILA 166 (284)
T ss_pred HhhcccchHHHHHHHHH----c------------cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 1 0111111111 0 1239999999987 245678999999988878888887
Q ss_pred ecCC--c---cccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--------cCCCHHHHHHHH
Q psy17903 174 CNYV--S---CIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET--------SGGDMRRAITCL 239 (355)
Q Consensus 174 ~~~~--~---~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~--------~~g~~r~~~~~l 239 (355)
++.. . .+.|++++|+. .++|++++.+++..++...+++.+..+++++.+.+..+ +.||.|.+.|.+
T Consensus 167 ~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~v 246 (284)
T TIGR02880 167 GYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAI 246 (284)
T ss_pred CCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 7542 2 24689999986 89999999999999999999999889999998888765 479999999999
Q ss_pred HHHHHhh
Q psy17903 240 QSCARLK 246 (355)
Q Consensus 240 ~~~~~~~ 246 (355)
+.+....
T Consensus 247 e~~~~~~ 253 (284)
T TIGR02880 247 DRARLRQ 253 (284)
T ss_pred HHHHHHH
Confidence 9887644
No 105
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=2.4e-18 Score=172.80 Aligned_cols=220 Identities=19% Similarity=0.193 Sum_probs=161.2
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCcc-----ccceeeecCCC
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY-----RERILELNASD 106 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~ 106 (355)
..+++++.||..+++++|+++.+..+.+.+.....++++|+||||||||++++.+++.+..... +..++.++...
T Consensus 169 ~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~ 248 (731)
T TIGR02639 169 TVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGS 248 (731)
T ss_pred hhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHH
Confidence 5688999999999999999999999999998888888999999999999999999999743221 33455665432
Q ss_pred cc----chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH---------HHHHHHHHHhhhccCCccEEEE
Q psy17903 107 DR----GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH---------AAQAALRRTMEKETKSTRFCLI 173 (355)
Q Consensus 107 ~~----~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~---------~~~~~Ll~~le~~~~~~~~Il~ 173 (355)
.. ......+.+.......... ...||||||+|.+.. +.++.|...|++ ..+++|.+
T Consensus 249 l~a~~~~~g~~e~~l~~i~~~~~~~---------~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~--g~i~~Iga 317 (731)
T TIGR02639 249 LLAGTKYRGDFEERLKAVVSEIEKE---------PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS--GKLRCIGS 317 (731)
T ss_pred HhhhccccchHHHHHHHHHHHHhcc---------CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC--CCeEEEEe
Confidence 21 1112222232222211000 123999999998852 346778888874 45778888
Q ss_pred ecCC-----ccccccccCCeeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHH
Q psy17903 174 CNYV-----SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGGD------MRRAITC 238 (355)
Q Consensus 174 ~~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~------~r~~~~~ 238 (355)
|+.. ....+++.+|+..+.+++|+.++...+++..... .++.++++++..++..++.. ++++++.
T Consensus 318 Tt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~l 397 (731)
T TIGR02639 318 TTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDV 397 (731)
T ss_pred cCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHH
Confidence 8752 2367899999999999999999999999977654 46789999999999887542 7889999
Q ss_pred HHHHHHhh-------CCCCCCHHHHHHHhCC
Q psy17903 239 LQSCARLK-------GGEGIVNEDVLEVTGV 262 (355)
Q Consensus 239 l~~~~~~~-------~~~~It~~~v~~~~~~ 262 (355)
++.++... ....|+.+++.+++..
T Consensus 398 ld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~ 428 (731)
T TIGR02639 398 IDEAGASFRLRPKAKKKANVSVKDIENVVAK 428 (731)
T ss_pred HHHhhhhhhcCcccccccccCHHHHHHHHHH
Confidence 98766432 1234888888877643
No 106
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.80 E-value=3e-18 Score=163.36 Aligned_cols=215 Identities=21% Similarity=0.352 Sum_probs=136.1
Q ss_pred CCCCccccccCCCCCCcccccHHHHHHHHHHHhcC---CCC--eEEEECCCCCCHHHHHHHHHHHhcCCcc--cccee--
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA---DLP--HFLFYGPPGTGKTSTMIAACHQLFGDMY--RERIL-- 100 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~---~~~--~~ll~Gp~G~GKt~la~~l~~~l~~~~~--~~~~~-- 100 (355)
+...+|++||+|++.++++.|++-++.++.|++.. ..+ -+||+||+|||||++++.++++++.+.. ..+..
T Consensus 4 ~~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~ 83 (519)
T PF03215_consen 4 DESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFR 83 (519)
T ss_pred cccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCcc
Confidence 56789999999999999999999999999998753 222 2899999999999999999999854211 11110
Q ss_pred eec--CCCcc----chHHHHHHHHHHHHhhccCCCC------CCCCCCCcEEEEEeCCCCCCHHHHHHH----HHHhhhc
Q psy17903 101 ELN--ASDDR----GIQVIRDKVKTFAQQTASGFNQ------DGKPCPPFKIVILDEADSMTHAAQAAL----RRTMEKE 164 (355)
Q Consensus 101 ~~~--~~~~~----~~~~i~~~i~~~~~~~~~~~~~------~~~~~~~~~vliiDe~d~l~~~~~~~L----l~~le~~ 164 (355)
+.+ ..+.. ..+.+......|.......... ......+++||+|||+..+.......| ++++...
T Consensus 84 ~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~ 163 (519)
T PF03215_consen 84 ESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSS 163 (519)
T ss_pred ccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcC
Confidence 000 00000 0011112222232221111000 111113678999999998755443444 4444433
Q ss_pred cC-CccEEEEe-cC------Cc-------cc-cccccC--CeeeEEecCCCHHHHHHHHHHHHHHc-----CC-CCC--H
Q psy17903 165 TK-STRFCLIC-NY------VS-------CI-IQPLTS--RCSKFRFKPLAENTMLTRLQYICEQE-----SV-MCD--F 218 (355)
Q Consensus 165 ~~-~~~~Il~~-~~------~~-------~l-~~~l~s--r~~~i~~~~~~~~~~~~~l~~~~~~~-----~~-~~~--~ 218 (355)
.. .++||++- +. .. .+ .+.+.. ++..|.|.|+...-+...|.+++..+ +. ..+ .
T Consensus 164 ~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~p~~~ 243 (519)
T PF03215_consen 164 RCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKVPDKQ 243 (519)
T ss_pred CCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccCCChH
Confidence 33 34444441 11 00 12 234443 34589999999999999999999987 22 222 3
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 219 KALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 219 ~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
+.++.|+..++||+|.|++.||.++.
T Consensus 244 ~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 244 SVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 56899999999999999999999887
No 107
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.79 E-value=2.2e-17 Score=156.17 Aligned_cols=212 Identities=11% Similarity=0.178 Sum_probs=146.9
Q ss_pred CCCCCccc-ccH--HHHHHHHHHHhcC-C-CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc--hHHH
Q psy17903 41 PKTIDDVI-EQQ--EVVSVLKKCLSGA-D-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG--IQVI 113 (355)
Q Consensus 41 p~~~~~~v-g~~--~~~~~l~~~l~~~-~-~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~i 113 (355)
+-+|+.++ |.. .+......+.... . .++++|||++|+|||++++++++.+.....+..++++++.+... ...+
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l 190 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDIL 190 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHH
Confidence 45788887 332 2445555555532 2 23499999999999999999999875433334566666543211 0111
Q ss_pred HH---HHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC--HHHHHHHHHHhhhcc-CCccEEEEecCCc----ccccc
Q psy17903 114 RD---KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT--HAAQAALRRTMEKET-KSTRFCLICNYVS----CIIQP 183 (355)
Q Consensus 114 ~~---~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--~~~~~~Ll~~le~~~-~~~~~Il~~~~~~----~l~~~ 183 (355)
.. .+..+.... ....+|+|||++.+. ...++.|..++.... ....+|++++... .+.+.
T Consensus 191 ~~~~~~~~~~~~~~-----------~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~r 259 (450)
T PRK14087 191 QKTHKEIEQFKNEI-----------CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNR 259 (450)
T ss_pred HHhhhHHHHHHHHh-----------ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHH
Confidence 11 111111110 023499999999987 456677777665422 2235777777542 35678
Q ss_pred ccCCee---eEEecCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--C--CCCCCHH
Q psy17903 184 LTSRCS---KFRFKPLAENTMLTRLQYICEQESV--MCDFKALETLVETSGGDMRRAITCLQSCARLK--G--GEGIVNE 254 (355)
Q Consensus 184 l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~--~~~It~~ 254 (355)
|++|+. .+.+.+|+.++...++++.++..|. .++++++++|+..++||+|.+.+.|.++..++ . +..||.+
T Consensus 260 L~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~~a~~~~~~~~it~~ 339 (450)
T PRK14087 260 LITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNFWSQQNPEEKIITIE 339 (450)
T ss_pred HHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccCCCCCCHH
Confidence 888875 8999999999999999999998775 69999999999999999999999999886554 2 3679999
Q ss_pred HHHHHhCCC
Q psy17903 255 DVLEVTGVI 263 (355)
Q Consensus 255 ~v~~~~~~~ 263 (355)
.+.+++...
T Consensus 340 ~v~~~l~~~ 348 (450)
T PRK14087 340 IVSDLFRDI 348 (450)
T ss_pred HHHHHHhhc
Confidence 999988653
No 108
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.79 E-value=1.2e-16 Score=153.04 Aligned_cols=217 Identities=17% Similarity=0.176 Sum_probs=148.9
Q ss_pred cccccCCC-CCCcccc-cHH--HHHHHHHHHhc-CCC-CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc
Q psy17903 35 WVEKYRPK-TIDDVIE-QQE--VVSVLKKCLSG-ADL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (355)
Q Consensus 35 ~~~k~~p~-~~~~~vg-~~~--~~~~l~~~l~~-~~~-~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 108 (355)
+.....+. +|++|+. ... +......++.+ +.. ..++|||++|+|||+|+.++++.+........++++++.+..
T Consensus 277 ~~a~L~~~~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~ 356 (617)
T PRK14086 277 PTARLNPKYTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT 356 (617)
T ss_pred ccCCCCCCCCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 44444443 6898873 322 33344555543 222 239999999999999999999997543223455666654321
Q ss_pred c--hHHHHH-HHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHhhhccC-CccEEEEecCC----c
Q psy17903 109 G--IQVIRD-KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKETK-STRFCLICNYV----S 178 (355)
Q Consensus 109 ~--~~~i~~-~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~-~~~~Il~~~~~----~ 178 (355)
. ...++. ....|.... ....+|+|||++.+.. ..+..|+.+++.... +..+|++++.. .
T Consensus 357 ~el~~al~~~~~~~f~~~y-----------~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 357 NEFINSIRDGKGDSFRRRY-----------REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred HHHHHHHHhccHHHHHHHh-----------hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 0 011111 111111110 0234999999999954 335667666654332 34567777754 2
Q ss_pred cccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCH
Q psy17903 179 CIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVN 253 (355)
Q Consensus 179 ~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~~~It~ 253 (355)
.+.+.|+||+. .+.+.+|+.+....+|++.+...++.++++++++|+....+|+|.+...|.++..++ .+..||.
T Consensus 426 ~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~a~~~~~~itl 505 (617)
T PRK14086 426 TLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAFASLNRQPVDL 505 (617)
T ss_pred hccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhhCCCCCH
Confidence 46678999976 899999999999999999999999999999999999999999999999999887665 4567999
Q ss_pred HHHHHHhCC
Q psy17903 254 EDVLEVTGV 262 (355)
Q Consensus 254 ~~v~~~~~~ 262 (355)
+.+++++..
T Consensus 506 ~la~~vL~~ 514 (617)
T PRK14086 506 GLTEIVLRD 514 (617)
T ss_pred HHHHHHHHH
Confidence 988887753
No 109
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.79 E-value=1.1e-17 Score=161.45 Aligned_cols=212 Identities=20% Similarity=0.195 Sum_probs=143.7
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHh-----------cCCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccce
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-----------GADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERI 99 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~-----------~~~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~ 99 (355)
...+.+.....+|++++|.++++..+.+++. +...+ ++||+||||||||++++++++.. ..++
T Consensus 42 ~~~~~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-----~~~~ 116 (495)
T TIGR01241 42 AKLLNEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPF 116 (495)
T ss_pred cccccCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-----CCCe
Confidence 3344455556689999999999888776653 12333 39999999999999999999987 3456
Q ss_pred eeecCCCcc------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHH
Q psy17903 100 LELNASDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRR 159 (355)
Q Consensus 100 ~~~~~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~ 159 (355)
+.+++++.. +...++..+...... .| .||||||+|.+... ..+.|+.
T Consensus 117 ~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~---------~p----~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~ 183 (495)
T TIGR01241 117 FSISGSDFVEMFVGVGASRVRDLFEQAKKN---------AP----CIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV 183 (495)
T ss_pred eeccHHHHHHHHhcccHHHHHHHHHHHHhc---------CC----CEEEEechhhhhhccccCcCCccHHHHHHHHHHHh
Confidence 666655421 122333333332211 11 29999999988532 2345555
Q ss_pred Hhhhc--cCCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Q psy17903 160 TMEKE--TKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMR 233 (355)
Q Consensus 160 ~le~~--~~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r 233 (355)
.|+.. ...+++|.+||.++.+.+++.++++ .+.++.|+.++..++++..+...... ++..+..+++.+.| +.+
T Consensus 184 ~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sga 262 (495)
T TIGR01241 184 EMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGA 262 (495)
T ss_pred hhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHH
Confidence 55532 2357788889999999999987543 79999999999999999888765443 34456778888765 445
Q ss_pred HHHHHHHHHHHhh---CCCCCCHHHHHHHhCC
Q psy17903 234 RAITCLQSCARLK---GGEGIVNEDVLEVTGV 262 (355)
Q Consensus 234 ~~~~~l~~~~~~~---~~~~It~~~v~~~~~~ 262 (355)
.+.+.++.++..+ +...|+.+++.+++..
T Consensus 263 dl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~ 294 (495)
T TIGR01241 263 DLANLLNEAALLAARKNKTEITMNDIEEAIDR 294 (495)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5555555444332 4567999999987753
No 110
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.79 E-value=6.9e-17 Score=152.32 Aligned_cols=207 Identities=15% Similarity=0.202 Sum_probs=145.0
Q ss_pred CCCccc-ccHH--HHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHH
Q psy17903 43 TIDDVI-EQQE--VVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117 (355)
Q Consensus 43 ~~~~~v-g~~~--~~~~l~~~l~~~~--~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 117 (355)
+|+.++ |... +......+..... ...++||||+|+|||++++++++++........++++++.+.. ..+...+
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~--~~~~~~~ 185 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT--NDFVNAL 185 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH--HHHHHHH
Confidence 577754 5432 3455555555422 2238999999999999999999998654334456666654321 1111111
Q ss_pred -----HHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHhhhc-cCCccEEEEecCC----cccccccc
Q psy17903 118 -----KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKE-TKSTRFCLICNYV----SCIIQPLT 185 (355)
Q Consensus 118 -----~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~-~~~~~~Il~~~~~----~~l~~~l~ 185 (355)
..+.... . ...+|+|||+|.+.. ..+..|+..++.. ..+..+|++++.. ..+.+.++
T Consensus 186 ~~~~~~~~~~~~-~----------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~ 254 (405)
T TIGR00362 186 RNNKMEEFKEKY-R----------SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLR 254 (405)
T ss_pred HcCCHHHHHHHH-H----------hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhh
Confidence 1111100 0 123999999999864 3456677666542 2334567777643 23567899
Q ss_pred CCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHh
Q psy17903 186 SRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVT 260 (355)
Q Consensus 186 sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~~~It~~~v~~~~ 260 (355)
+|+. .++|.+|+.++...+++..++..++.++++++++|++.+.||+|.+...|.++..++ .+..||.+.+.+++
T Consensus 255 SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~~a~~~~~~it~~~~~~~L 334 (405)
T TIGR00362 255 SRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLAYASLTGKPITLELAKEAL 334 (405)
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 9985 799999999999999999999999999999999999999999999998888887665 45779999998887
Q ss_pred CC
Q psy17903 261 GV 262 (355)
Q Consensus 261 ~~ 262 (355)
..
T Consensus 335 ~~ 336 (405)
T TIGR00362 335 KD 336 (405)
T ss_pred HH
Confidence 54
No 111
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.78 E-value=8.8e-17 Score=153.40 Aligned_cols=208 Identities=14% Similarity=0.192 Sum_probs=147.0
Q ss_pred CCCccc-cc--HHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHH
Q psy17903 43 TIDDVI-EQ--QEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117 (355)
Q Consensus 43 ~~~~~v-g~--~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 117 (355)
+|+.++ |. ..+......+.... ..+.++||||+|+|||++++++++++........++++++.+.. ..+...+
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~--~~~~~~~ 197 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT--NDFVNAL 197 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH--HHHHHHH
Confidence 688866 42 33556666666542 22349999999999999999999998654334456666665421 1111111
Q ss_pred H-----HHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHhhhc-cCCccEEEEecCC-c---ccccccc
Q psy17903 118 K-----TFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKE-TKSTRFCLICNYV-S---CIIQPLT 185 (355)
Q Consensus 118 ~-----~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~-~~~~~~Il~~~~~-~---~l~~~l~ 185 (355)
. .+.... . ...+|+|||+|.+.. ..+..|+.+++.. .....+|++++.+ . .+.+.++
T Consensus 198 ~~~~~~~~~~~~-~----------~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~ 266 (450)
T PRK00149 198 RNNTMEEFKEKY-R----------SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLR 266 (450)
T ss_pred HcCcHHHHHHHH-h----------cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHH
Confidence 1 111100 0 223999999999854 3456666655432 1223466667643 2 2567899
Q ss_pred CCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHh
Q psy17903 186 SRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVT 260 (355)
Q Consensus 186 sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~~~It~~~v~~~~ 260 (355)
||+. .++|.+|+.+++..+++..+...++.++++++++|++.+.||+|.+...|..+..++ .+..||.+.+.+++
T Consensus 267 SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it~~~~~~~l 346 (450)
T PRK00149 267 SRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPITLELAKEAL 346 (450)
T ss_pred hHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHH
Confidence 9984 799999999999999999999999999999999999999999999999998887665 45679999999888
Q ss_pred CCC
Q psy17903 261 GVI 263 (355)
Q Consensus 261 ~~~ 263 (355)
...
T Consensus 347 ~~~ 349 (450)
T PRK00149 347 KDL 349 (450)
T ss_pred HHh
Confidence 643
No 112
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.77 E-value=1.5e-17 Score=155.37 Aligned_cols=215 Identities=18% Similarity=0.228 Sum_probs=140.9
Q ss_pred CCCCCccccccCCCCCCcccccHHHHHHHHHHHhc-----------C-CCC-eEEEECCCCCCHHHHHHHHHHHhcCCcc
Q psy17903 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------A-DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMY 95 (355)
Q Consensus 29 ~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~ 95 (355)
+.-..++.+++.+.+|+++.|.+.+++.|.+++.- + ..+ ++|||||||||||++|+++++.+..
T Consensus 167 ~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--- 243 (438)
T PTZ00361 167 PLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--- 243 (438)
T ss_pred hhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC---
Confidence 33356678888888999999999999999887741 1 222 3999999999999999999999743
Q ss_pred ccceeeecCCCcc------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHH
Q psy17903 96 RERILELNASDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALR 158 (355)
Q Consensus 96 ~~~~~~~~~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll 158 (355)
.++.+.+++.. +...++..+..... ..+ .+|||||+|.+.. +.+..++
T Consensus 244 --~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~---------~~P----~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll 308 (438)
T PTZ00361 244 --TFLRVVGSELIQKYLGDGPKLVRELFRVAEE---------NAP----SIVFIDEIDAIGTKRYDATSGGEKEIQRTML 308 (438)
T ss_pred --CEEEEecchhhhhhcchHHHHHHHHHHHHHh---------CCC----cEEeHHHHHHHhccCCCCCCcccHHHHHHHH
Confidence 45555554321 11122222222111 112 2999999987742 2233344
Q ss_pred HHh---hh--ccCCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Q psy17903 159 RTM---EK--ETKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG 230 (355)
Q Consensus 159 ~~l---e~--~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 230 (355)
.++ +. ...++.+|++||.++.+.+++.+ |+. .|+|++|+.++..++++.++.+..+.- +..+..++..+.|
T Consensus 309 ~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-dvdl~~la~~t~g 387 (438)
T PTZ00361 309 ELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-DVDLEEFIMAKDE 387 (438)
T ss_pred HHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-CcCHHHHHHhcCC
Confidence 443 32 23467899999999999999876 443 799999999999999998876654322 1234555555433
Q ss_pred -CHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCC
Q psy17903 231 -DMRRAITCLQSCARLK---GGEGIVNEDVLEVTGV 262 (355)
Q Consensus 231 -~~r~~~~~l~~~~~~~---~~~~It~~~v~~~~~~ 262 (355)
+...+.+.+..++..+ +...|+.+|+.++...
T Consensus 388 ~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 388 LSGADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 3344444444444333 5567999999886643
No 113
>KOG0733|consensus
Probab=99.77 E-value=8.9e-18 Score=156.21 Aligned_cols=182 Identities=21% Similarity=0.252 Sum_probs=138.6
Q ss_pred CCCcccccHHHHHHHHHHHh----------cC-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc---
Q psy17903 43 TIDDVIEQQEVVSVLKKCLS----------GA-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD--- 107 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~----------~~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--- 107 (355)
+|.++.|.+..+..|...+- -| .+|. +|||||||||||.+|++++.++ ..+++.+++.+.
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-----~vPf~~isApeivSG 262 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-----GVPFLSISAPEIVSG 262 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-----CCceEeecchhhhcc
Confidence 59999999999988887662 12 2333 9999999999999999999998 556777776553
Q ss_pred ---cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHH-----------HHHHHHHhhhcc------CC
Q psy17903 108 ---RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA-----------QAALRRTMEKET------KS 167 (355)
Q Consensus 108 ---~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~-----------~~~Ll~~le~~~------~~ 167 (355)
.+...+++.+.+..... || |+||||+|.+.+.. ...|+..|++.. ..
T Consensus 263 vSGESEkkiRelF~~A~~~a---------Pc----ivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~ 329 (802)
T KOG0733|consen 263 VSGESEKKIRELFDQAKSNA---------PC----IVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDP 329 (802)
T ss_pred cCcccHHHHHHHHHHHhccC---------Ce----EEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCC
Confidence 22356777776655443 33 99999999997632 245777776532 45
Q ss_pred ccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy17903 168 TRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA 243 (355)
Q Consensus 168 ~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~ 243 (355)
+++|.+||.++.+.++|++-++ .|.+.-|++.+..++|+.+|+...+.- +-....|+..++|.++.-+..|-..+
T Consensus 330 VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGADL~AL~~~A 407 (802)
T KOG0733|consen 330 VLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGADLMALCREA 407 (802)
T ss_pred eEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchhHHHHHHHH
Confidence 7888899999999999998776 799999999999999999998765543 23367788999998887766664443
No 114
>KOG0730|consensus
Probab=99.77 E-value=9.6e-18 Score=157.81 Aligned_cols=208 Identities=19% Similarity=0.206 Sum_probs=149.6
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHh-----------cC-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC
Q psy17903 38 KYRPKTIDDVIEQQEVVSVLKKCLS-----------GA-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (355)
Q Consensus 38 k~~p~~~~~~vg~~~~~~~l~~~l~-----------~~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 104 (355)
.....+|+++.|.++++..|++.+. -| ..|. +|||||||||||++|++++++. ..+|+.+.+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~-----~~nFlsvkg 501 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA-----GMNFLSVKG 501 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh-----cCCeeeccC
Confidence 3345589999999999999998773 22 3333 9999999999999999999998 446667666
Q ss_pred CCcc------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH-----------HHHHHHHHhhh--cc
Q psy17903 105 SDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-----------AQAALRRTMEK--ET 165 (355)
Q Consensus 105 ~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~Ll~~le~--~~ 165 (355)
++.. +...+++.+.......+ -|||+||+|.+..+ ..+.|+.-|+- ..
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP-------------~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~ 568 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAP-------------CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEAL 568 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCC-------------eEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccccc
Confidence 5422 23456666665544332 29999999998543 23455555542 23
Q ss_pred CCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHHHHHHHH
Q psy17903 166 KSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLVETSGG-DMRRAITCLQ 240 (355)
Q Consensus 166 ~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~~~~~l~ 240 (355)
.++.+|.+||.++.+++++.+.++ .+.+++|+.+...++++..+++ .+++++ .++.|++.+.| +-+.+.+.++
T Consensus 569 k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~~T~g~SGAel~~lCq 646 (693)
T KOG0730|consen 569 KNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQATEGYSGAEIVAVCQ 646 (693)
T ss_pred CcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHHHhccCChHHHHHHHH
Confidence 578888899999999999999554 7999999999999999988866 445554 68888888755 4455556666
Q ss_pred HHHHhh-----CCCCCCHHHHHHHhCCCCh
Q psy17903 241 SCARLK-----GGEGIVNEDVLEVTGVIPN 265 (355)
Q Consensus 241 ~~~~~~-----~~~~It~~~v~~~~~~~~~ 265 (355)
.++.++ .-..|+.+++.+++.....
T Consensus 647 ~A~~~a~~e~i~a~~i~~~hf~~al~~~r~ 676 (693)
T KOG0730|consen 647 EAALLALRESIEATEITWQHFEEALKAVRP 676 (693)
T ss_pred HHHHHHHHHhcccccccHHHHHHHHHhhcc
Confidence 666655 2345777777777654433
No 115
>KOG1970|consensus
Probab=99.77 E-value=2.8e-17 Score=151.52 Aligned_cols=207 Identities=23% Similarity=0.352 Sum_probs=137.0
Q ss_pred CCCccccccCCCCCCcccccHHHHHHHHHHHh-----cCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeec
Q psy17903 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-----GADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (355)
Q Consensus 31 ~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~-----~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 103 (355)
..-+|.+||+|.+.+++..|+.-+..+++|++ ....++ +||+||+||||||+++.++++++-. +.+..
T Consensus 68 ~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~-----~~Ew~ 142 (634)
T KOG1970|consen 68 EFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQ-----LIEWS 142 (634)
T ss_pred ccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCce-----eeeec
Confidence 35789999999999999999999999999998 555555 9999999999999999999998532 22211
Q ss_pred -------CCCcc----c----hHHHHHHHHHHHHhh----ccCCCCCCCCCCCcEEEEEeCCCCCCHH-H----HHHHHH
Q psy17903 104 -------ASDDR----G----IQVIRDKVKTFAQQT----ASGFNQDGKPCPPFKIVILDEADSMTHA-A----QAALRR 159 (355)
Q Consensus 104 -------~~~~~----~----~~~i~~~i~~~~~~~----~~~~~~~~~~~~~~~vliiDe~d~l~~~-~----~~~Ll~ 159 (355)
..... + ...--..++.|.... ....... ....++++|+|||+...... . ++.|..
T Consensus 143 Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~-~~~~~~~liLveDLPn~~~~d~~~~f~evL~~ 221 (634)
T KOG1970|consen 143 NPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGD-DLRTDKKLILVEDLPNQFYRDDSETFREVLRL 221 (634)
T ss_pred CCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhccc-ccccCceEEEeeccchhhhhhhHHHHHHHHHH
Confidence 00000 0 111111122222211 1110111 11125679999999877543 3 334444
Q ss_pred HhhhccCCccEEEEecCC-------cc-ccccc--cCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCC------HHHHHH
Q psy17903 160 TMEKETKSTRFCLICNYV-------SC-IIQPL--TSRCSKFRFKPLAENTMLTRLQYICEQESVMCD------FKALET 223 (355)
Q Consensus 160 ~le~~~~~~~~Il~~~~~-------~~-l~~~l--~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~------~~~~~~ 223 (355)
+...+...++|| +|+.. .+ ....+ .-|...|.|.|+...-+...|+.+|..+....+ ...++.
T Consensus 222 y~s~g~~PlIf~-iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~ 300 (634)
T KOG1970|consen 222 YVSIGRCPLIFI-ITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVEL 300 (634)
T ss_pred HHhcCCCcEEEE-EeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHH
Confidence 444333334444 44321 11 22333 344458999999999999999999999877766 567888
Q ss_pred HHHHcCCCHHHHHHHHHHHHH
Q psy17903 224 LVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 224 l~~~~~g~~r~~~~~l~~~~~ 244 (355)
++..++||+|.|++.||.-+.
T Consensus 301 i~~~s~GDIRsAInsLQlsss 321 (634)
T KOG1970|consen 301 ICQGSGGDIRSAINSLQLSSS 321 (634)
T ss_pred HHHhcCccHHHHHhHhhhhcc
Confidence 999999999999999998753
No 116
>CHL00176 ftsH cell division protein; Validated
Probab=99.76 E-value=5.9e-17 Score=158.35 Aligned_cols=202 Identities=20% Similarity=0.241 Sum_probs=141.0
Q ss_pred CCCCcccccHHHHHHHHHHH---hc--------CCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc
Q psy17903 42 KTIDDVIEQQEVVSVLKKCL---SG--------ADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l---~~--------~~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 109 (355)
.+|++++|.++++..+.+.+ +. ...+ ++||+||||||||++|++++.+. ..+++.+++++...
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-----~~p~i~is~s~f~~ 254 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----EVPFFSISGSEFVE 254 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCeeeccHHHHHH
Confidence 47999999999888877665 21 1222 49999999999999999999987 34566666654211
Q ss_pred ------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------H---HHHHHHHHhhhc--cCC
Q psy17903 110 ------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------A---AQAALRRTMEKE--TKS 167 (355)
Q Consensus 110 ------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~---~~~~Ll~~le~~--~~~ 167 (355)
...++..+..... ..++ ||||||+|.+.. . ..+.|+..++.. ..+
T Consensus 255 ~~~g~~~~~vr~lF~~A~~---------~~P~----ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ 321 (638)
T CHL00176 255 MFVGVGAARVRDLFKKAKE---------NSPC----IVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKG 321 (638)
T ss_pred HhhhhhHHHHHHHHHHHhc---------CCCc----EEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCC
Confidence 1222322222211 1222 999999998842 1 234455555432 346
Q ss_pred ccEEEEecCCccccccccCCe---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Q psy17903 168 TRFCLICNYVSCIIQPLTSRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQSCA 243 (355)
Q Consensus 168 ~~~Il~~~~~~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~ 243 (355)
+++|.+||.++.+.+++.+++ ..+.|..|+.++...+++.+++.... .++..+..+++.+.| +.+.+.+.+..++
T Consensus 322 ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lvneAa 400 (638)
T CHL00176 322 VIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLLNEAA 400 (638)
T ss_pred eeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 788889999999999998765 38999999999999999999876332 345668889988877 6666666666655
Q ss_pred Hhh---CCCCCCHHHHHHHhCC
Q psy17903 244 RLK---GGEGIVNEDVLEVTGV 262 (355)
Q Consensus 244 ~~~---~~~~It~~~v~~~~~~ 262 (355)
..+ +...|+.+++.+++..
T Consensus 401 l~a~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 401 ILTARRKKATITMKEIDTAIDR 422 (638)
T ss_pred HHHHHhCCCCcCHHHHHHHHHH
Confidence 433 5567999999987743
No 117
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.75 E-value=9.5e-17 Score=149.79 Aligned_cols=205 Identities=18% Similarity=0.238 Sum_probs=136.3
Q ss_pred CCCCCcccccHHHHHHHHHHHhc-----------C-C-CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCLSG-----------A-D-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l~~-----------~-~-~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
..+|+++.|.+.+++.+...+.. | . ..++|||||||||||++|+++++.+. ..++.+++++.
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~-----~~~i~v~~~~l 201 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETN-----ATFIRVVGSEL 201 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhC-----CCEEEeehHHH
Confidence 34789999999999999887631 1 2 23399999999999999999999984 34566665542
Q ss_pred c------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHhhh-----cc
Q psy17903 108 R------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT-----------HAAQAALRRTMEK-----ET 165 (355)
Q Consensus 108 ~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~-----~~ 165 (355)
. ....++..+...... ...+|||||+|.+. .+.+..+..++.. ..
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~-------------~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~ 268 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREK-------------APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR 268 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhc-------------CCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC
Confidence 1 111222222211111 12399999999983 2334455555532 22
Q ss_pred CCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Q psy17903 166 KSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCLQS 241 (355)
Q Consensus 166 ~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~ 241 (355)
.++++|++||.++.+.+++.+ |+. .+.|++|+.++..++++.+++...+.- ...+..++..+.| +.+.+...+..
T Consensus 269 ~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~la~~t~g~sgadl~~l~~e 347 (389)
T PRK03992 269 GNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEELAELTEGASGADLKAICTE 347 (389)
T ss_pred CCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHHHHHHcCCCCHHHHHHHHHH
Confidence 467889999999999999876 443 799999999999999998876544321 1346677777755 33444444444
Q ss_pred HHHhh---CCCCCCHHHHHHHhCCCC
Q psy17903 242 CARLK---GGEGIVNEDVLEVTGVIP 264 (355)
Q Consensus 242 ~~~~~---~~~~It~~~v~~~~~~~~ 264 (355)
++..+ +...|+.+++.+++....
T Consensus 348 A~~~a~~~~~~~i~~~d~~~A~~~~~ 373 (389)
T PRK03992 348 AGMFAIRDDRTEVTMEDFLKAIEKVM 373 (389)
T ss_pred HHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 44433 456799999998876543
No 118
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.75 E-value=5e-17 Score=153.66 Aligned_cols=208 Identities=14% Similarity=0.179 Sum_probs=145.0
Q ss_pred CCCccc-ccH--HHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH--
Q psy17903 43 TIDDVI-EQQ--EVVSVLKKCLSGA-DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK-- 116 (355)
Q Consensus 43 ~~~~~v-g~~--~~~~~l~~~l~~~-~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-- 116 (355)
+|+.++ |.. .+......+..+. ...+++||||+|+|||++++++++.+........++++++.+. ...+...
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f--~~~~~~~~~ 180 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDLVDSMK 180 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHH--HHHHHHHHh
Confidence 688887 433 2334555555432 2345999999999999999999999865433445666665431 1111111
Q ss_pred ---HHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHhhhcc-CCccEEEEecC-Cc---cccccccC
Q psy17903 117 ---VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKET-KSTRFCLICNY-VS---CIIQPLTS 186 (355)
Q Consensus 117 ---i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~-~~~~~Il~~~~-~~---~l~~~l~s 186 (355)
+..+..... ....+|+|||++.+.. ..+..|+..+.... ....+|++++. +. .+.+.++|
T Consensus 181 ~~~~~~f~~~~~----------~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~S 250 (440)
T PRK14088 181 EGKLNEFREKYR----------KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVS 250 (440)
T ss_pred cccHHHHHHHHH----------hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhh
Confidence 111111100 0124999999998853 34556666654322 23356666653 32 35678999
Q ss_pred Cee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHHHHHhC
Q psy17903 187 RCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDVLEVTG 261 (355)
Q Consensus 187 r~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~~~It~~~v~~~~~ 261 (355)
|+. .+.+.+|+.+....++++.++..++.++++++++|++.+.||+|.+...+.++..++ .+..||.+.+.+++.
T Consensus 251 R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~~it~~~a~~~L~ 330 (440)
T PRK14088 251 RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGEEVDLKEAILLLK 330 (440)
T ss_pred HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 987 899999999999999999999999999999999999999999999999999887665 567899999888775
Q ss_pred C
Q psy17903 262 V 262 (355)
Q Consensus 262 ~ 262 (355)
.
T Consensus 331 ~ 331 (440)
T PRK14088 331 D 331 (440)
T ss_pred H
Confidence 3
No 119
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.75 E-value=9.5e-17 Score=152.28 Aligned_cols=206 Identities=15% Similarity=0.137 Sum_probs=141.4
Q ss_pred CCCCcccccHHHHHHHHHHHh--------cC-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc---
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLS--------GA-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR--- 108 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~--------~~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--- 108 (355)
.+|+++.|.+.+++.+.+... .| ..|. +|||||||||||.+|+++++++ +.+++.++++...
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-----~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-----QLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEEhHHhcccc
Confidence 479999999988888775321 12 2333 9999999999999999999997 4456666654321
Q ss_pred ---chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH------------HHHHHHHHhhhccCCccEEEE
Q psy17903 109 ---GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA------------AQAALRRTMEKETKSTRFCLI 173 (355)
Q Consensus 109 ---~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~~Ll~~le~~~~~~~~Il~ 173 (355)
+...++..+...... .++ ||+|||+|.+... ....|+..|++....+.+|.+
T Consensus 300 vGese~~l~~~f~~A~~~---------~P~----IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaT 366 (489)
T CHL00195 300 VGESESRMRQMIRIAEAL---------SPC----ILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVAT 366 (489)
T ss_pred cChHHHHHHHHHHHHHhc---------CCc----EEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 112334333322211 122 9999999977431 234566777766667778888
Q ss_pred ecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCC-HHHHHHHHHHHHHhh--
Q psy17903 174 CNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVM-CDFKALETLVETSGGD-MRRAITCLQSCARLK-- 246 (355)
Q Consensus 174 ~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~-~r~~~~~l~~~~~~~-- 246 (355)
||+++.+.+++.+ |+. .+.++.|+.++..++++..+.+.+.. .++..+..++..+.|- .+.+.+.+..+...+
T Consensus 367 TN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~ 446 (489)
T CHL00195 367 ANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFY 446 (489)
T ss_pred cCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999976 554 78999999999999999998875433 3455678888887553 333333333333322
Q ss_pred CCCCCCHHHHHHHhCCCCh
Q psy17903 247 GGEGIVNEDVLEVTGVIPN 265 (355)
Q Consensus 247 ~~~~It~~~v~~~~~~~~~ 265 (355)
.+..++.+++..++....+
T Consensus 447 ~~~~lt~~dl~~a~~~~~P 465 (489)
T CHL00195 447 EKREFTTDDILLALKQFIP 465 (489)
T ss_pred cCCCcCHHHHHHHHHhcCC
Confidence 5677999999988876655
No 120
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.75 E-value=3.2e-16 Score=131.92 Aligned_cols=177 Identities=16% Similarity=0.181 Sum_probs=138.6
Q ss_pred HHHHHHHHhcCCCCe-EEEECCCC-CCHHHHHHHHHHHhcCCc----cccceeeecCC-------CccchHHHHHHHHHH
Q psy17903 54 VSVLKKCLSGADLPH-FLFYGPPG-TGKTSTMIAACHQLFGDM----YRERILELNAS-------DDRGIQVIRDKVKTF 120 (355)
Q Consensus 54 ~~~l~~~l~~~~~~~-~ll~Gp~G-~GKt~la~~l~~~l~~~~----~~~~~~~~~~~-------~~~~~~~i~~~i~~~ 120 (355)
++.+.+.++.++..| |||.|..+ +||..++..+++.+.+.. ...++..+... ...+++.+|+....+
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l 81 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFL 81 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHH
Confidence 467888999999999 99999998 999999999999886531 12344444332 346788999877776
Q ss_pred HHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeeeEEecCCCHHH
Q psy17903 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENT 200 (355)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~ 200 (355)
...+..+ ++||++|+++|.|+.++.++|+++||+|+.+++||++|+++..++++++|||..+.|+.+....
T Consensus 82 ~~~p~~g---------~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~ 152 (263)
T PRK06581 82 SKTSAIS---------GYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHA 152 (263)
T ss_pred hhCcccC---------CcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHH
Confidence 6554433 6789999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy17903 201 MLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242 (355)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 242 (355)
..++....+.- ..+...++.|.+...-|........+.+
T Consensus 153 ~~e~~~~~~~p---~~~~~~l~~i~~~~~~d~~~w~~~~~~~ 191 (263)
T PRK06581 153 YNELYSQFIQP---IADNKTLDFINRFTTKDRELWLDFIDNL 191 (263)
T ss_pred HHHHHHHhccc---ccccHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 88877655432 2344557777766666655555554443
No 121
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.75 E-value=1.8e-16 Score=147.25 Aligned_cols=206 Identities=20% Similarity=0.212 Sum_probs=135.4
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHhc-----------C-CC-CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC
Q psy17903 38 KYRPKTIDDVIEQQEVVSVLKKCLSG-----------A-DL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (355)
Q Consensus 38 k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~-~~-~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 104 (355)
.....+|+++.|.+.+++.|.+.+.- | .. .++|||||||||||++|+++++.+.. .++.+.+
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~-----~fi~i~~ 212 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA-----TFIRVVG 212 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEeh
Confidence 33445899999999999999887631 1 12 23999999999999999999998743 3444444
Q ss_pred CCcc------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHH---HHHhhh-
Q psy17903 105 SDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAAL---RRTMEK- 163 (355)
Q Consensus 105 ~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~L---l~~le~- 163 (355)
+... +...+++.+..... . ...||||||+|.+.. ..+..+ +..++.
T Consensus 213 s~l~~k~~ge~~~~lr~lf~~A~~---------~----~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 213 SEFVQKYLGEGPRMVRDVFRLARE---------N----APSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHh---------c----CCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 3210 11122222222111 1 123999999998732 223333 333432
Q ss_pred -ccCCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Q psy17903 164 -ETKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITC 238 (355)
Q Consensus 164 -~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~ 238 (355)
...++.+|++||.++.+.+++.+ |+. .++|+.|+.++...+++.++.+.++.- +-.+..++..+.| +.+.+.+.
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~-dvd~~~la~~t~g~sgaDI~~l 358 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSE-EVDLEDFVSRPEKISAADIAAI 358 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCc-ccCHHHHHHHcCCCCHHHHHHH
Confidence 23467889999999999999877 443 799999999999999998887655432 2345667777654 45555555
Q ss_pred HHHHHHhh---CCCCCCHHHHHHHhCC
Q psy17903 239 LQSCARLK---GGEGIVNEDVLEVTGV 262 (355)
Q Consensus 239 l~~~~~~~---~~~~It~~~v~~~~~~ 262 (355)
+..+...+ +...|+.+|+.+++..
T Consensus 359 ~~eA~~~A~r~~~~~i~~~df~~A~~~ 385 (398)
T PTZ00454 359 CQEAGMQAVRKNRYVILPKDFEKGYKT 385 (398)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 55555443 4467999999887643
No 122
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.74 E-value=4e-17 Score=140.39 Aligned_cols=193 Identities=18% Similarity=0.255 Sum_probs=127.5
Q ss_pred CCCccc-c--cHHHHHHHHHHHhcCCC--CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc--hHHHHH
Q psy17903 43 TIDDVI-E--QQEVVSVLKKCLSGADL--PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG--IQVIRD 115 (355)
Q Consensus 43 ~~~~~v-g--~~~~~~~l~~~l~~~~~--~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~i~~ 115 (355)
+|+.++ | +..+............. ..++||||+|+|||+|++++++++.....+..++++++.+... .+.+.+
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~ 85 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRD 85 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHT
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHc
Confidence 688886 5 34445555555554332 3399999999999999999999986533344566666543211 011100
Q ss_pred -HHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHH--HHHHHHHhhhcc-CCccEEEEecC-Cc---cccccccCC
Q psy17903 116 -KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA--QAALRRTMEKET-KSTRFCLICNY-VS---CIIQPLTSR 187 (355)
Q Consensus 116 -~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~--~~~Ll~~le~~~-~~~~~Il~~~~-~~---~l~~~l~sr 187 (355)
.+..+...- . ...+|+|||++.+.... +..|..+++... ....+|++++. +. .+.+.++||
T Consensus 86 ~~~~~~~~~~-~----------~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SR 154 (219)
T PF00308_consen 86 GEIEEFKDRL-R----------SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSR 154 (219)
T ss_dssp TSHHHHHHHH-C----------TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHH
T ss_pred ccchhhhhhh-h----------cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhh
Confidence 011111110 0 23499999999997654 777777776532 23456777754 33 356778888
Q ss_pred ee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q psy17903 188 CS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246 (355)
Q Consensus 188 ~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 246 (355)
+. .+.+.+|+.++...++++.+...++.++++++++|++...+|+|.+...|+++..++
T Consensus 155 l~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 155 LSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAYA 216 (219)
T ss_dssp HHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHHH
T ss_pred HhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHHh
Confidence 65 899999999999999999999999999999999999999999999999999887654
No 123
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.74 E-value=3.4e-16 Score=145.30 Aligned_cols=213 Identities=16% Similarity=0.159 Sum_probs=148.9
Q ss_pred CCCCcccccHHHHHHHHHHHhcCCCC--eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHH
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSGADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~~~~~--~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 119 (355)
..+.+++|++..+..+.+.+.+-... ++||+|++||||..+|+++++..... +.+|+.+||.. ...+.+...+..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~--~~PFVavNcaA-ip~~l~ESELFG 214 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRA--KGPFIAVNCAA-IPENLLESELFG 214 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCccc--CCCceeeeccc-CCHHHHHHHhhc
Confidence 35778999999999999988764333 39999999999999999999986443 45899999986 333333333333
Q ss_pred HHHhhccCCC---CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------c
Q psy17903 120 FAQQTASGFN---QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------S 178 (355)
Q Consensus 120 ~~~~~~~~~~---~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~ 178 (355)
+....+.+.. .+....++++++||||+..|+.+.|..|++.|++.. .++++|.+||.. .
T Consensus 215 hekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G 294 (464)
T COG2204 215 HEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAG 294 (464)
T ss_pred ccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcC
Confidence 3332222211 111122677899999999999999999999998642 357899888853 2
Q ss_pred cccccccCCeeeEE--ecCCCH--HHHH----HHHHHHHHHcC---CCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhh
Q psy17903 179 CIIQPLTSRCSKFR--FKPLAE--NTML----TRLQYICEQES---VMCDFKALETLVET-SGGDMRRAITCLQSCARLK 246 (355)
Q Consensus 179 ~l~~~l~sr~~~i~--~~~~~~--~~~~----~~l~~~~~~~~---~~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~ 246 (355)
++.+.|--|..++. ++|+.+ +++. .++++.+++.| ..+++++++.|..+ ++||+|++.|.+++++..+
T Consensus 295 ~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il~ 374 (464)
T COG2204 295 RFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVILS 374 (464)
T ss_pred CcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhcC
Confidence 34444545555433 333332 3333 33444444443 46899999998876 5999999999999999988
Q ss_pred CCCCCCHHHHH
Q psy17903 247 GGEGIVNEDVL 257 (355)
Q Consensus 247 ~~~~It~~~v~ 257 (355)
.+..|+.+++.
T Consensus 375 ~~~~i~~~~l~ 385 (464)
T COG2204 375 EGPEIEVEDLP 385 (464)
T ss_pred Cccccchhhcc
Confidence 88888887755
No 124
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.74 E-value=2.6e-16 Score=138.07 Aligned_cols=121 Identities=20% Similarity=0.247 Sum_probs=103.6
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecC------------CccccccccCCeeeEEecCCCHHHHHHHHH
Q psy17903 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY------------VSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206 (355)
Q Consensus 139 ~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~------------~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 206 (355)
.|+||||+|.|.-+++..|.+.||.. -.+++|++||. |+-+...|..|..++.-.|++.+++.++++
T Consensus 293 GVLFIDEvHmLDIE~FsFlnrAlEse-~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~ 371 (450)
T COG1224 293 GVLFIDEVHMLDIECFSFLNRALESE-LAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIR 371 (450)
T ss_pred ceEEEechhhhhHHHHHHHHHHhhcc-cCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHH
Confidence 49999999999999999999999864 34678888874 234567789999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHh
Q psy17903 207 YICEQESVMCDFKALETLVETS-GGDMRRAITCLQSCARLK---GGEGIVNEDVLEVT 260 (355)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~---~~~~It~~~v~~~~ 260 (355)
.+++.+++.++++++++|+... ..++|.++++|.-+...+ +++.|..++|+++.
T Consensus 372 iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~ 429 (450)
T COG1224 372 IRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAK 429 (450)
T ss_pred HhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHH
Confidence 9999999999999999999875 679999999997554444 66789999988753
No 125
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.74 E-value=5.3e-17 Score=164.24 Aligned_cols=200 Identities=17% Similarity=0.167 Sum_probs=149.5
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCc-----cccceeeecCCC
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELNASD 106 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~ 106 (355)
..+++++.||..++.++|+++.++++.+.+.....++++|+||||||||++++.+++.+.... .+..++.++...
T Consensus 174 ~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~ 253 (852)
T TIGR03345 174 TTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL 253 (852)
T ss_pred hhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh
Confidence 467888899999999999999999999998888888899999999999999999999985432 123344444432
Q ss_pred c----cch----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----H---HHHHHHHHhhhccCCccE
Q psy17903 107 D----RGI----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----A---AQAALRRTMEKETKSTRF 170 (355)
Q Consensus 107 ~----~~~----~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----~---~~~~Ll~~le~~~~~~~~ 170 (355)
. ... ..++..+....... ...||||||+|.+.. . ..+.|...+++ ...++
T Consensus 254 l~ag~~~~ge~e~~lk~ii~e~~~~~------------~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~ 319 (852)
T TIGR03345 254 LQAGASVKGEFENRLKSVIDEVKASP------------QPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRT 319 (852)
T ss_pred hhcccccchHHHHHHHHHHHHHHhcC------------CCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEE
Confidence 1 112 23444444332211 234999999999964 2 23457777774 45778
Q ss_pred EEEecCC-----ccccccccCCeeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHH
Q psy17903 171 CLICNYV-----SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGGD------MRRA 235 (355)
Q Consensus 171 Il~~~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~------~r~~ 235 (355)
|.+|+.. ....++|.+||..|.+++|+.++...+|+..... .++.++++++..++..+.+. +.++
T Consensus 320 IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKA 399 (852)
T TIGR03345 320 IAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKA 399 (852)
T ss_pred EEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHH
Confidence 8888752 2378999999999999999999999997666543 46889999999999988653 6789
Q ss_pred HHHHHHHHHh
Q psy17903 236 ITCLQSCARL 245 (355)
Q Consensus 236 ~~~l~~~~~~ 245 (355)
+..|+.++..
T Consensus 400 Idlldea~a~ 409 (852)
T TIGR03345 400 VSLLDTACAR 409 (852)
T ss_pred HHHHHHHHHH
Confidence 9999877653
No 126
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.74 E-value=1.6e-16 Score=149.79 Aligned_cols=209 Identities=18% Similarity=0.259 Sum_probs=145.4
Q ss_pred cCCC-CCCccc-ccHH--HHHHHHHHHhc-----C-CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc
Q psy17903 39 YRPK-TIDDVI-EQQE--VVSVLKKCLSG-----A-DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (355)
Q Consensus 39 ~~p~-~~~~~v-g~~~--~~~~l~~~l~~-----~-~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 108 (355)
..|. +|+.++ |... +.....++.+. + ...+++||||+|+|||++++++++.+.... ..++++++....
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~--~~v~yi~~~~f~ 181 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESG--GKILYVRSELFT 181 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcC--CCEEEeeHHHHH
Confidence 3454 799887 4332 33455555532 1 223499999999999999999999985432 345555543211
Q ss_pred chHHHHHHHH-----HHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHhhhc-cCCccEEEEecCC---
Q psy17903 109 GIQVIRDKVK-----TFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKE-TKSTRFCLICNYV--- 177 (355)
Q Consensus 109 ~~~~i~~~i~-----~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~-~~~~~~Il~~~~~--- 177 (355)
..+...+. .+.... ....+|+|||++.+.. ..++.|...+... .....+|++++..
T Consensus 182 --~~~~~~l~~~~~~~f~~~~-----------~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~ 248 (445)
T PRK12422 182 --EHLVSAIRSGEMQRFRQFY-----------RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQD 248 (445)
T ss_pred --HHHHHHHhcchHHHHHHHc-----------ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHH
Confidence 11111111 111100 0234999999999964 3466666665422 2234677777653
Q ss_pred -ccccccccCCe---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH---Hhh--CC
Q psy17903 178 -SCIIQPLTSRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCA---RLK--GG 248 (355)
Q Consensus 178 -~~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~---~~~--~~ 248 (355)
..+.+.|+||+ ..+.+.+|+.+++..++++.++..++.++++++++|+....+|+|.+.+.|+.++ .++ .+
T Consensus 249 l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~~~~ 328 (445)
T PRK12422 249 LKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKKLSH 328 (445)
T ss_pred HhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhC
Confidence 34668899998 4899999999999999999999999999999999999999999999999999885 333 45
Q ss_pred CCCCHHHHHHHhCC
Q psy17903 249 EGIVNEDVLEVTGV 262 (355)
Q Consensus 249 ~~It~~~v~~~~~~ 262 (355)
..||.+.+++++..
T Consensus 329 ~~i~~~~~~~~l~~ 342 (445)
T PRK12422 329 QLLYVDDIKALLHD 342 (445)
T ss_pred CCCCHHHHHHHHHH
Confidence 67999999988753
No 127
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.73 E-value=3.4e-16 Score=143.29 Aligned_cols=215 Identities=17% Similarity=0.249 Sum_probs=152.9
Q ss_pred cccccCCCCCCccc-cc--HHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc
Q psy17903 35 WVEKYRPKTIDDVI-EQ--QEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (355)
Q Consensus 35 ~~~k~~p~~~~~~v-g~--~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 109 (355)
...+|. |+.++ |. .-+......+.+.. ..+.++||||.|+|||+|++++++.......+..++++.......
T Consensus 80 l~~~yt---FdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~ 156 (408)
T COG0593 80 LNPKYT---FDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN 156 (408)
T ss_pred CCCCCc---hhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH
Confidence 344444 66666 32 23344445555443 234499999999999999999999998766666677766654211
Q ss_pred --hHHHHH-HHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHhhhccCC-ccEEEEecCCcc----
Q psy17903 110 --IQVIRD-KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--AQAALRRTMEKETKS-TRFCLICNYVSC---- 179 (355)
Q Consensus 110 --~~~i~~-~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--~~~~Ll~~le~~~~~-~~~Il~~~~~~~---- 179 (355)
+..+++ .+..|-... ...+++|||++.+... .+..+..++..-... -.+|++++.+.+
T Consensus 157 ~~v~a~~~~~~~~Fk~~y------------~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~ 224 (408)
T COG0593 157 DFVKALRDNEMEKFKEKY------------SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNG 224 (408)
T ss_pred HHHHHHHhhhHHHHHHhh------------ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhcc
Confidence 111111 122222221 1138999999998764 366776666543222 267777765432
Q ss_pred ccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHH
Q psy17903 180 IIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNE 254 (355)
Q Consensus 180 l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~~~It~~ 254 (355)
+.+.|+||+. .+.+.+|+.+....+|++.+...++.++++++.+++.....|+|.+...|.++..++ .+..||.+
T Consensus 225 ~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~ 304 (408)
T COG0593 225 LEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITID 304 (408)
T ss_pred ccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHH
Confidence 4578888865 899999999999999999999999999999999999999999999999999988777 45689999
Q ss_pred HHHHHhCCCC
Q psy17903 255 DVLEVTGVIP 264 (355)
Q Consensus 255 ~v~~~~~~~~ 264 (355)
.+.+++....
T Consensus 305 ~v~e~L~~~~ 314 (408)
T COG0593 305 LVKEILKDLL 314 (408)
T ss_pred HHHHHHHHhh
Confidence 9998876543
No 128
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.72 E-value=3.2e-16 Score=145.40 Aligned_cols=213 Identities=19% Similarity=0.204 Sum_probs=147.0
Q ss_pred CCCCcccccHHHHHHHHHHHhcCCCC--eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHH
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSGADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~~~~~--~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 119 (355)
-+|++++|.+..+.++.+.++..... .+||.|++||||..+|+++++..... +.+|+.+||+. ....-+...+..
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~--~~PFIaiNCaA-iPe~LlESELFG 318 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRA--NGPFIAINCAA-IPETLLESELFG 318 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCccc--CCCeEEEeccc-CCHHHHHHHHhC
Confidence 36999999998888887777654332 39999999999999999999986443 55899999986 333344444444
Q ss_pred HHHhhccCCCCCCCCC----CCcEEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCccEEEEecCC-cc----
Q psy17903 120 FAQQTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKE-----------TKSTRFCLICNYV-SC---- 179 (355)
Q Consensus 120 ~~~~~~~~~~~~~~~~----~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~-~~---- 179 (355)
+....+.+....|++. ++++.||+||+..|+...|..|++.|++. +.++++|.+||.. .+
T Consensus 319 ye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~i~~ 398 (560)
T COG3829 319 YEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKMIAE 398 (560)
T ss_pred cCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHHHhc
Confidence 4444555544444444 77889999999999999999999999874 3468899999854 22
Q ss_pred --ccccccCCee--eEEecCCCH--HHHHHHHHHH----HHHcC---CCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh
Q psy17903 180 --IIQPLTSRCS--KFRFKPLAE--NTMLTRLQYI----CEQES---VMCDFKALETLVET-SGGDMRRAITCLQSCARL 245 (355)
Q Consensus 180 --l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~----~~~~~---~~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~ 245 (355)
+-..|-=|.. .+.++|+.+ +++....... ..+.+ ..++++++..|.++ ++||+|.+.|.++++..+
T Consensus 399 G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y~WPGNVRELeNviER~v~~ 478 (560)
T COG3829 399 GTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRYDWPGNVRELENVIERAVNL 478 (560)
T ss_pred CcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhCCCCchHHHHHHHHHHHHhc
Confidence 2222222333 233444432 3433333333 22332 24889999998775 699999999999999875
Q ss_pred h-CCCCCCHHHHH
Q psy17903 246 K-GGEGIVNEDVL 257 (355)
Q Consensus 246 ~-~~~~It~~~v~ 257 (355)
. .+..|+.+++-
T Consensus 479 ~~~~~~I~~~~lp 491 (560)
T COG3829 479 VESDGLIDADDLP 491 (560)
T ss_pred cCCcceeehhhcc
Confidence 5 34557776665
No 129
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.71 E-value=7.3e-16 Score=150.28 Aligned_cols=217 Identities=18% Similarity=0.185 Sum_probs=149.2
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH
Q psy17903 38 KYRPKTIDDVIEQQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (355)
Q Consensus 38 k~~p~~~~~~vg~~~~~~~l~~~l~~~~--~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (355)
+++..+|+.++|++..+..+.+.++... ..+++|+|++||||+++|+++++.... ...+++.+||..... ..+..
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r--~~~pfv~i~c~~~~~-~~~~~ 265 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR--AKRPFVKVNCAALSE-TLLES 265 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeecCCCCH-HHHHH
Confidence 4555689999999999888887776432 234999999999999999999988643 244789999986422 22221
Q ss_pred HHHHHHHhhccCC--CCCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC----
Q psy17903 116 KVKTFAQQTASGF--NQDG-KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV---- 177 (355)
Q Consensus 116 ~i~~~~~~~~~~~--~~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~---- 177 (355)
.+.........+. ...| ...++.++|||||++.|+...|..|++++++.. .++++|++++..
T Consensus 266 ~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~ 345 (534)
T TIGR01817 266 ELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEA 345 (534)
T ss_pred HHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHH
Confidence 1111000000000 0001 111356699999999999999999999998643 246788887643
Q ss_pred ---ccccccccCCee--eEEecCCC--HHHHHHHHHHHHHH----cC--CCCCHHHHHHHHHH-cCCCHHHHHHHHHHHH
Q psy17903 178 ---SCIIQPLTSRCS--KFRFKPLA--ENTMLTRLQYICEQ----ES--VMCDFKALETLVET-SGGDMRRAITCLQSCA 243 (355)
Q Consensus 178 ---~~l~~~l~sr~~--~i~~~~~~--~~~~~~~l~~~~~~----~~--~~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~ 243 (355)
..+.+.|..|+. .|.++|+. .+++..++...+.+ .+ ..+++++++.|..+ ++||+|++.+.++.++
T Consensus 346 ~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~ 425 (534)
T TIGR01817 346 VAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVRELENCLERTA 425 (534)
T ss_pred HHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 123344555544 56777776 46666665555442 22 57899999999987 5999999999999998
Q ss_pred HhhCCCCCCHHHHH
Q psy17903 244 RLKGGEGIVNEDVL 257 (355)
Q Consensus 244 ~~~~~~~It~~~v~ 257 (355)
..+.+..|+.+++.
T Consensus 426 ~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 426 TLSRSGTITRSDFS 439 (534)
T ss_pred HhCCCCcccHHHCc
Confidence 87777789988875
No 130
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.70 E-value=4.7e-16 Score=144.51 Aligned_cols=206 Identities=16% Similarity=0.203 Sum_probs=132.2
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHhcC------------C-CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC
Q psy17903 38 KYRPKTIDDVIEQQEVVSVLKKCLSGA------------D-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (355)
Q Consensus 38 k~~p~~~~~~vg~~~~~~~l~~~l~~~------------~-~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 104 (355)
+....+|+++.|.+.+++.+...+... . ..+++|+||||||||++|+++++.+.. .++.+.+
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~-----~~~~v~~ 189 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-----TFIRVVG 189 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCC-----CEEecch
Confidence 444457899999999999998877421 1 223999999999999999999999843 3444443
Q ss_pred CCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhhh----
Q psy17903 105 SDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK---- 163 (355)
Q Consensus 105 ~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~---- 163 (355)
..... ...++..+.. +.. . ...+|||||+|.+.. ..+..+...+..
T Consensus 190 ~~l~~~~~g~~~~~i~~~f~~-a~~--------~----~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~ 256 (364)
T TIGR01242 190 SELVRKYIGEGARLVREIFEL-AKE--------K----APSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF 256 (364)
T ss_pred HHHHHHhhhHHHHHHHHHHHH-HHh--------c----CCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC
Confidence 32110 0111111111 111 1 123999999998832 233445444432
Q ss_pred -ccCCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHH
Q psy17903 164 -ETKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM-RRAITC 238 (355)
Q Consensus 164 -~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~-r~~~~~ 238 (355)
...++.+|++||.++.+.+++.+ |+. .+.|+.|+.++..++++..+......- +.....+++.+.|-. +.+.+.
T Consensus 257 ~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~~~~la~~t~g~sg~dl~~l 335 (364)
T TIGR01242 257 DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVDLEAIAKMTEGASGADLKAI 335 (364)
T ss_pred CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCCHHHHHHHcCCCCHHHHHHH
Confidence 23467889999999989888875 433 799999999999999998875543321 124667777775533 333333
Q ss_pred HHHHHHh---hCCCCCCHHHHHHHhCC
Q psy17903 239 LQSCARL---KGGEGIVNEDVLEVTGV 262 (355)
Q Consensus 239 l~~~~~~---~~~~~It~~~v~~~~~~ 262 (355)
+..+... .+...|+.+++.+++..
T Consensus 336 ~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 336 CTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 4333332 25678999999987643
No 131
>KOG0727|consensus
Probab=99.70 E-value=1.2e-15 Score=128.03 Aligned_cols=209 Identities=19% Similarity=0.254 Sum_probs=134.2
Q ss_pred CccccccCCC-CCCcccccHHHHHHHHHHHhc-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccc
Q psy17903 33 VPWVEKYRPK-TIDDVIEQQEVVSVLKKCLSG-----------A-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRER 98 (355)
Q Consensus 33 ~~~~~k~~p~-~~~~~vg~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~ 98 (355)
.++...-+|. ++.++.|.+-.++.++..++- | .+|. +|+|||||||||++++++++.. ...
T Consensus 142 ~ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t-----~a~ 216 (408)
T KOG0727|consen 142 SMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHT-----TAA 216 (408)
T ss_pred cccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhcc-----chh
Confidence 3444444554 788999988888888777631 2 3333 9999999999999999999986 345
Q ss_pred eeeecCCCc------cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHh
Q psy17903 99 ILELNASDD------RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTM 161 (355)
Q Consensus 99 ~~~~~~~~~------~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~l 161 (355)
|+.+.+++. .+...++..+.-..... ..+|||||+|.+.. +.|.-|+++|
T Consensus 217 firvvgsefvqkylgegprmvrdvfrlakena-------------psiifideidaiatkrfdaqtgadrevqril~ell 283 (408)
T KOG0727|consen 217 FIRVVGSEFVQKYLGEGPRMVRDVFRLAKENA-------------PSIIFIDEIDAIATKRFDAQTGADREVQRILIELL 283 (408)
T ss_pred eeeeccHHHHHHHhccCcHHHHHHHHHHhccC-------------CcEEEeehhhhHhhhhccccccccHHHHHHHHHHH
Confidence 666666642 22334444333222221 12999999998843 3455566666
Q ss_pred hh-----ccCCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----cC
Q psy17903 162 EK-----ETKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET----SG 229 (355)
Q Consensus 162 e~-----~~~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~----~~ 229 (355)
.. ...++.+|++||..+.+.|++.+.++ .++|+-|+..+-+-++..++.+.++.-+-+ ++.++.+ ++
T Consensus 284 nqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vd-le~~v~rpdkis~ 362 (408)
T KOG0727|consen 284 NQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVD-LEDLVARPDKISG 362 (408)
T ss_pred HhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccC-HHHHhcCccccch
Confidence 53 35678899999999999999998876 799999999998888888887765543323 3333322 33
Q ss_pred CCHHHHHHHHHHHHHhhCCCCCCHHHHHHHh
Q psy17903 230 GDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260 (355)
Q Consensus 230 g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~ 260 (355)
.++..+.++.-..+-....-.|...|+++.-
T Consensus 363 adi~aicqeagm~avr~nryvvl~kd~e~ay 393 (408)
T KOG0727|consen 363 ADINAICQEAGMLAVRENRYVVLQKDFEKAY 393 (408)
T ss_pred hhHHHHHHHHhHHHHHhcceeeeHHHHHHHH
Confidence 3444433333222222133345566665543
No 132
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.69 E-value=7.3e-16 Score=155.74 Aligned_cols=202 Identities=20% Similarity=0.246 Sum_probs=137.2
Q ss_pred cccccHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH----
Q psy17903 46 DVIEQQEVVSVLKKCLSG------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD---- 115 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~------~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~---- 115 (355)
+++|++.+++.+.+++.. ...++++|+||||||||++|+++++.+.. +++.++.........+..
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~-----~~~~i~~~~~~~~~~i~g~~~~ 395 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNR-----KFVRFSLGGVRDEAEIRGHRRT 395 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcC-----CeEEEeCCCcccHHHHcCCCCc
Confidence 478999999999886632 13345999999999999999999999843 444554433222222110
Q ss_pred -------HH-HHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHH----HHHHHHHhhhc---------------cCCc
Q psy17903 116 -------KV-KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA----QAALRRTMEKE---------------TKST 168 (355)
Q Consensus 116 -------~i-~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~----~~~Ll~~le~~---------------~~~~ 168 (355)
.+ ..+.... ....+|+|||+|.+.++. .++|+..|+.. ..++
T Consensus 396 ~~g~~~g~i~~~l~~~~-----------~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 396 YVGAMPGRIIQGLKKAK-----------TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred eeCCCCchHHHHHHHhC-----------cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 00 1111000 022399999999997643 47788887631 1357
Q ss_pred cEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHHc--CCCHHHHH
Q psy17903 169 RFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC-----EQE-----SVMCDFKALETLVETS--GGDMRRAI 236 (355)
Q Consensus 169 ~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~-----~~~-----~~~~~~~~~~~l~~~~--~g~~r~~~ 236 (355)
+||+++|..+.+.+++++||..+.|++++.++...+++..+ +.. ++.++++++..+++.. ...+|.+.
T Consensus 465 ~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~ 544 (775)
T TIGR00763 465 IFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLE 544 (775)
T ss_pred EEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHH
Confidence 88999999999999999999999999999999999887765 222 4578999999998754 34556555
Q ss_pred HHHHHHHHhh-------CC--------CCCCHHHHHHHhCCC
Q psy17903 237 TCLQSCARLK-------GG--------EGIVNEDVLEVTGVI 263 (355)
Q Consensus 237 ~~l~~~~~~~-------~~--------~~It~~~v~~~~~~~ 263 (355)
..+++++... +. -.|+.+++.+.++..
T Consensus 545 r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~~ 586 (775)
T TIGR00763 545 RQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGKP 586 (775)
T ss_pred HHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCcc
Confidence 5554443221 11 257788888777644
No 133
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.69 E-value=3.4e-15 Score=143.20 Aligned_cols=214 Identities=16% Similarity=0.184 Sum_probs=140.2
Q ss_pred CCCcccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhc------CCccccceeeecCCCccchHHHH
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLF------GDMYRERILELNASDDRGIQVIR 114 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~------~~~~~~~~~~~~~~~~~~~~~i~ 114 (355)
.|++++|++..+..+.+.+..- ...++||+|++||||+.+|+.+++.+. ....+.+++.+||..... ..+.
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e-~lle 295 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE-SLLE 295 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh-hhHH
Confidence 5889999999998888887542 223499999999999999999998732 222355899999986432 2222
Q ss_pred HHHHHHHHhhccCCCCCCC----CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-c
Q psy17903 115 DKVKTFAQQTASGFNQDGK----PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-S 178 (355)
Q Consensus 115 ~~i~~~~~~~~~~~~~~~~----~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-~ 178 (355)
..+..+....+.+....++ ..+++++|||||++.|+...|..|+++|++.. .++++|++|+.. .
T Consensus 296 seLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat~~~L~ 375 (538)
T PRK15424 296 AELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISATHCDLE 375 (538)
T ss_pred HHhcCCccccccCccccccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEecCCCHH
Confidence 2221111111111110011 11456799999999999999999999998642 345788888743 1
Q ss_pred c------ccccccCCee--eEEecCCCH--HHHHHHHHHHHHH----cCCCCCHHHH-------HHHHHH-cCCCHHHHH
Q psy17903 179 C------IIQPLTSRCS--KFRFKPLAE--NTMLTRLQYICEQ----ESVMCDFKAL-------ETLVET-SGGDMRRAI 236 (355)
Q Consensus 179 ~------l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~~~----~~~~~~~~~~-------~~l~~~-~~g~~r~~~ 236 (355)
. +.+.+--|.. .+.++|+.+ +++..++...+.+ .+..++++++ +.|..+ ++||+|++.
T Consensus 376 ~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WPGNvREL~ 455 (538)
T PRK15424 376 EDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWPGNVRELR 455 (538)
T ss_pred HHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCCchHHHHH
Confidence 1 2233333433 566777764 5666666655543 5667888776 344433 699999999
Q ss_pred HHHHHHHHhhCC---CCCCHHHHH
Q psy17903 237 TCLQSCARLKGG---EGIVNEDVL 257 (355)
Q Consensus 237 ~~l~~~~~~~~~---~~It~~~v~ 257 (355)
|.+++++.+..+ ..|+.+++.
T Consensus 456 nvier~~i~~~~~~~~~i~~~~l~ 479 (538)
T PRK15424 456 NLMERLALFLSVEPTPDLTPQFLQ 479 (538)
T ss_pred HHHHHHHHhcCCCCcCccCHHHhh
Confidence 999998887532 467777664
No 134
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.69 E-value=2.4e-15 Score=137.06 Aligned_cols=206 Identities=16% Similarity=0.145 Sum_probs=137.1
Q ss_pred ccccHHHHHHHHHHHhcCCC--CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhh
Q psy17903 47 VIEQQEVVSVLKKCLSGADL--PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQT 124 (355)
Q Consensus 47 ~vg~~~~~~~l~~~l~~~~~--~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 124 (355)
++|++..+..+.+.+..... .+++|+|++||||+++|++++..... ...+++.+||..... +.+...+.......
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r--~~~pfv~vnc~~~~~-~~l~~~lfG~~~g~ 77 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR--WQGPLVKLNCAALSE-NLLDSELFGHEAGA 77 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc--cCCCeEEEeCCCCCh-HHHHHHHhcccccc
Confidence 46777777777666654322 23999999999999999999987543 245789999986422 22222111111100
Q ss_pred ccCCC--CCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------cccccc
Q psy17903 125 ASGFN--QDG-KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCIIQP 183 (355)
Q Consensus 125 ~~~~~--~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~l~~~ 183 (355)
..+.. ..| ...++.++|||||++.|+...|..|+++|++.. .++++|++++.. ..+.+.
T Consensus 78 ~~ga~~~~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr~d 157 (329)
T TIGR02974 78 FTGAQKRHQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFRAD 157 (329)
T ss_pred ccCcccccCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchHHH
Confidence 00000 001 111355699999999999999999999998643 456888888743 234456
Q ss_pred ccCCee--eEEecCCC--HHHHHHHHHHHHH----HcC----CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCCCC
Q psy17903 184 LTSRCS--KFRFKPLA--ENTMLTRLQYICE----QES----VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGGEG 250 (355)
Q Consensus 184 l~sr~~--~i~~~~~~--~~~~~~~l~~~~~----~~~----~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~~~~ 250 (355)
|..|+. .|.++|+. .+++..++...+. +.+ ..+++++++.|..+. +||+|++.|.++.++..+.+..
T Consensus 158 L~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~~~~~~ 237 (329)
T TIGR02974 158 LLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYRHGLEE 237 (329)
T ss_pred HHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCc
Confidence 666664 67777777 3666666555443 323 368999999998875 9999999999999888765555
Q ss_pred CCHHH
Q psy17903 251 IVNED 255 (355)
Q Consensus 251 It~~~ 255 (355)
++.++
T Consensus 238 ~~~~~ 242 (329)
T TIGR02974 238 APIDE 242 (329)
T ss_pred cchhh
Confidence 66555
No 135
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.69 E-value=3.7e-15 Score=135.97 Aligned_cols=211 Identities=15% Similarity=0.131 Sum_probs=139.7
Q ss_pred CCCcccccHHHHHHHHHHHhcCCC--CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHH
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGADL--PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~~~--~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 120 (355)
-+++++|.+..+..+.+.+..... .+++|+|++||||+++|++++..... ...+++.+||.... .+.+...+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r--~~~pfv~v~c~~~~-~~~~~~~lfg~ 80 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR--WQGPFISLNCAALN-ENLLDSELFGH 80 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc--cCCCeEEEeCCCCC-HHHHHHHHccc
Confidence 367899999888888777654322 24999999999999999999976432 24578999998743 23222222111
Q ss_pred HHhhccCCC---CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------cc
Q psy17903 121 AQQTASGFN---QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SC 179 (355)
Q Consensus 121 ~~~~~~~~~---~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~ 179 (355)
......+.. ......++.++|||||++.|+...|..|+.+++... .++++|++++.. ..
T Consensus 81 ~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~ 160 (326)
T PRK11608 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGK 160 (326)
T ss_pred cccccCCcccccCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCC
Confidence 110000000 000111355699999999999999999999997632 246788877643 23
Q ss_pred ccccccCCee--eEEecCCCH--HHHHHHHHHHH----HHcC----CCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhh
Q psy17903 180 IIQPLTSRCS--KFRFKPLAE--NTMLTRLQYIC----EQES----VMCDFKALETLVET-SGGDMRRAITCLQSCARLK 246 (355)
Q Consensus 180 l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~----~~~~----~~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~ 246 (355)
+.+.|..|+. .|.++|+.+ +++..++...+ .+.+ ..+++++++.|..+ ++||+|++.+.++.++..+
T Consensus 161 f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 161 FRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (326)
T ss_pred chHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 4455666654 677777764 56665555543 3333 35899999999876 4999999999999988766
Q ss_pred CCCCCCHHHH
Q psy17903 247 GGEGIVNEDV 256 (355)
Q Consensus 247 ~~~~It~~~v 256 (355)
.+..|+.+++
T Consensus 241 ~~~~~~~~~l 250 (326)
T PRK11608 241 GTSEYPLDNI 250 (326)
T ss_pred CCCCCchhhc
Confidence 5555655443
No 136
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.68 E-value=4.5e-15 Score=143.61 Aligned_cols=213 Identities=16% Similarity=0.148 Sum_probs=143.0
Q ss_pred CCCCCcccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHH
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK 118 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 118 (355)
...|++++|.+..+..+.+.++.. ...+++|+|++||||+++|++++..... ...+++.+||+.... +.+...+.
T Consensus 200 ~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r--~~~pfv~inca~~~~-~~~e~elF 276 (520)
T PRK10820 200 DSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR--GKKPFLALNCASIPD-DVVESELF 276 (520)
T ss_pred cccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC--CCCCeEEeccccCCH-HHHHHHhc
Confidence 347999999998877777666432 2233999999999999999998876533 234788999987432 22221111
Q ss_pred HHHHhhccCC--CCCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------
Q psy17903 119 TFAQQTASGF--NQDG-KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV------- 177 (355)
Q Consensus 119 ~~~~~~~~~~--~~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~------- 177 (355)
........+. ...| ...++.++|+|||++.|+...|..|++++++.. .++++|++|+..
T Consensus 277 G~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l~~~ 356 (520)
T PRK10820 277 GHAPGAYPNALEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVELVQK 356 (520)
T ss_pred CCCCCCcCCcccCCCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHHHHc
Confidence 1010000000 0001 011355699999999999999999999997632 346788877643
Q ss_pred ccccccccCCee--eEEecCCCH--HHHHHHH----HHHHHHcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHh
Q psy17903 178 SCIIQPLTSRCS--KFRFKPLAE--NTMLTRL----QYICEQESV---MCDFKALETLVET-SGGDMRRAITCLQSCARL 245 (355)
Q Consensus 178 ~~l~~~l~sr~~--~i~~~~~~~--~~~~~~l----~~~~~~~~~---~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~ 245 (355)
..+.+.|..|.. .+.++|+.+ +++..++ ...+.+.|. .+++++++.|..+ ++||+|++.|.++.+...
T Consensus 357 g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~~~ 436 (520)
T PRK10820 357 GEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRALTQ 436 (520)
T ss_pred CCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHHHh
Confidence 123444656643 677777765 4555443 334444443 6899999999887 799999999999999887
Q ss_pred hCCCCCCHHHH
Q psy17903 246 KGGEGIVNEDV 256 (355)
Q Consensus 246 ~~~~~It~~~v 256 (355)
+.+..|+.+++
T Consensus 437 ~~~~~i~~~~~ 447 (520)
T PRK10820 437 LEGYELRPQDI 447 (520)
T ss_pred CCCCcccHHHc
Confidence 77778988885
No 137
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.68 E-value=7.6e-16 Score=155.26 Aligned_cols=172 Identities=21% Similarity=0.241 Sum_probs=121.9
Q ss_pred CCCCCcccccHHHHHHHHHHHh------------cCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l~------------~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
..+|+++.|.+.+++.|.+.+. +...+. +|||||||||||++|+++++++. .+++.+++++.
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~-----~~fi~v~~~~l 523 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESG-----ANFIAVRGPEI 523 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcC-----CCEEEEehHHH
Confidence 3479999999999999988764 122333 99999999999999999999973 45667766542
Q ss_pred c------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH------------HHHHHHHHHhhh--ccCC
Q psy17903 108 R------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH------------AAQAALRRTMEK--ETKS 167 (355)
Q Consensus 108 ~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~~Ll~~le~--~~~~ 167 (355)
. ....++..+...... ...+|||||+|.+.+ ...+.|+..|+. ...+
T Consensus 524 ~~~~vGese~~i~~~f~~A~~~-------------~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~ 590 (733)
T TIGR01243 524 LSKWVGESEKAIREIFRKARQA-------------APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSN 590 (733)
T ss_pred hhcccCcHHHHHHHHHHHHHhc-------------CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCC
Confidence 1 112333333332221 223999999998742 224556666663 3457
Q ss_pred ccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCCH
Q psy17903 168 TRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDF-KALETLVETSGGDM 232 (355)
Q Consensus 168 ~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~g~~ 232 (355)
+++|++||.++.+.+++.+ |+. .+.|+.|+.++..++++...++ ..+++ ..+..+++.+.|..
T Consensus 591 v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~s 657 (733)
T TIGR01243 591 VVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGYT 657 (733)
T ss_pred EEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCCC
Confidence 8889999999999999986 665 7999999999999999876644 33433 34778888876643
No 138
>KOG0734|consensus
Probab=99.67 E-value=1.5e-15 Score=139.62 Aligned_cols=199 Identities=20% Similarity=0.223 Sum_probs=140.9
Q ss_pred CCCCcccccHHHHHHHHHHHh-----------cCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc--
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLS-----------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD-- 107 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~-----------~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-- 107 (355)
.+|+++-|.++++.+|.+.+. +|..|. +|++||||+|||.||++++.+. +.+|+...+++.
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA-----~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA-----GVPFFYASGSEFDE 375 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc-----CCCeEeccccchhh
Confidence 469999999999887776652 456666 9999999999999999999886 456666666653
Q ss_pred ----cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhhhc--cCCccE
Q psy17903 108 ----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEKE--TKSTRF 170 (355)
Q Consensus 108 ----~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~--~~~~~~ 170 (355)
.+...+++.+...... -|| ||||||+|.+.. +..|.|+--|+-. ...+++
T Consensus 376 m~VGvGArRVRdLF~aAk~~---------APc----IIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIv 442 (752)
T KOG0734|consen 376 MFVGVGARRVRDLFAAAKAR---------APC----IIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIV 442 (752)
T ss_pred hhhcccHHHHHHHHHHHHhc---------CCe----EEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEE
Confidence 2234566655544332 233 999999998842 2345666666543 345788
Q ss_pred EEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC-CHHHHHHHHHHHHHh
Q psy17903 171 CLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDF-KALETLVETSGG-DMRRAITCLQSCARL 245 (355)
Q Consensus 171 Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~g-~~r~~~~~l~~~~~~ 245 (355)
|.+||.++.++++|.+.++ .|.++.|+..-..++|..++.+ +..++ -....|++-+.| +-..+.|++..++.+
T Consensus 443 igATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k--i~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlk 520 (752)
T KOG0734|consen 443 IGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK--IPLDEDVDPKIIARGTPGFSGADLANLVNQAALK 520 (752)
T ss_pred EeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc--CCcccCCCHhHhccCCCCCchHHHHHHHHHHHHH
Confidence 8899999999999988876 7888999988888888888765 33442 235566666655 344556666666665
Q ss_pred h---CCCCCCHHHHHHHh
Q psy17903 246 K---GGEGIVNEDVLEVT 260 (355)
Q Consensus 246 ~---~~~~It~~~v~~~~ 260 (355)
+ +...+|+.+++.+-
T Consensus 521 Aa~dga~~VtM~~LE~ak 538 (752)
T KOG0734|consen 521 AAVDGAEMVTMKHLEFAK 538 (752)
T ss_pred HHhcCcccccHHHHhhhh
Confidence 5 55678888887543
No 139
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.67 E-value=8.6e-15 Score=138.87 Aligned_cols=178 Identities=20% Similarity=0.227 Sum_probs=118.6
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhc-----------C-CCC-eEEEECCCCCCHHHHHHHHHHHhcCCcc---
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------A-DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMY--- 95 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~--- 95 (355)
..+..+++.+.+|+++.|.+..++.+.+.+.. + ..+ ++|||||||||||++++++++.+.....
T Consensus 169 ~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~ 248 (512)
T TIGR03689 169 EDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAET 248 (512)
T ss_pred hcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccccc
Confidence 44556777788999999999999999887631 1 222 3999999999999999999999854311
Q ss_pred --ccceeeecCCCcc------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH------------HHH
Q psy17903 96 --RERILELNASDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA------------AQA 155 (355)
Q Consensus 96 --~~~~~~~~~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~------------~~~ 155 (355)
...++.+..++.. ....++..+....... ..+.+ -||||||+|.+... ..+
T Consensus 249 ~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a-----~~g~p----~IIfIDEiD~L~~~R~~~~s~d~e~~il~ 319 (512)
T TIGR03689 249 GDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKA-----SDGRP----VIVFFDEMDSIFRTRGSGVSSDVETTVVP 319 (512)
T ss_pred CCceeEEeccchhhcccccchHHHHHHHHHHHHHHHh-----hcCCC----ceEEEehhhhhhcccCCCccchHHHHHHH
Confidence 1223343332211 0112222222221111 11222 29999999988431 134
Q ss_pred HHHHHhhhcc--CCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q psy17903 156 ALRRTMEKET--KSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFK 219 (355)
Q Consensus 156 ~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 219 (355)
.|+..|+... .++++|.+||.++.+.+++.+ |+. .|+|++|+.++..++++.++.. .++++++
T Consensus 320 ~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~ 387 (512)
T TIGR03689 320 QLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDAD 387 (512)
T ss_pred HHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHH
Confidence 6666665432 467888999999999999998 543 6999999999999999988764 3455433
No 140
>KOG0733|consensus
Probab=99.67 E-value=1.9e-15 Score=140.92 Aligned_cols=168 Identities=17% Similarity=0.239 Sum_probs=123.4
Q ss_pred CCCCcccccHHHHHHHHHHHhc-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSG-----------A-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 108 (355)
.+|+++.+.+++..+|..++-. | ..|. +|+|||||||||.+|+++|++. ..+|+.+.+++..
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEa-----g~NFisVKGPELl 582 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEA-----GANFISVKGPELL 582 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhc-----cCceEeecCHHHH
Confidence 3789999999999988877632 1 2333 9999999999999999999997 5577777776532
Q ss_pred c------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhhhc--cCCcc
Q psy17903 109 G------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEKE--TKSTR 169 (355)
Q Consensus 109 ~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~--~~~~~ 169 (355)
. ...++..+..... .-|| |||+||+|.|.+ ...|.|+--|+-. ...+.
T Consensus 583 NkYVGESErAVR~vFqRAR~---------saPC----VIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~ 649 (802)
T KOG0733|consen 583 NKYVGESERAVRQVFQRARA---------SAPC----VIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVY 649 (802)
T ss_pred HHHhhhHHHHHHHHHHHhhc---------CCCe----EEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceE
Confidence 1 1223333332221 2344 999999999965 2356666666533 34677
Q ss_pred EEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Q psy17903 170 FCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKA-LETLVET 227 (355)
Q Consensus 170 ~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~ 227 (355)
+|.+||.++.++|++.+.++ .+.+..|+.++..++|+.+.+..+..+++++ ++.|+..
T Consensus 650 viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~ 711 (802)
T KOG0733|consen 650 VIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN 711 (802)
T ss_pred EEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc
Confidence 88899999999999998887 6888999999999999999987677776543 6666654
No 141
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.67 E-value=2.5e-15 Score=134.06 Aligned_cols=103 Identities=24% Similarity=0.264 Sum_probs=79.2
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCC------------ccccccccCCeeeEEecCCCHHHHHHHHH
Q psy17903 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV------------SCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206 (355)
Q Consensus 139 ~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~------------~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 206 (355)
+|+||||+|.|..+....|.+.||.. -.+++|++||+. +-+...+.+||.++...|++.+++.++++
T Consensus 280 GVLFIDEvHmLDiEcFsfLnralEs~-~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~ 358 (398)
T PF06068_consen 280 GVLFIDEVHMLDIECFSFLNRALESE-LSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILK 358 (398)
T ss_dssp -EEEEESGGGSBHHHHHHHHHHHTST-T--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHH
T ss_pred ceEEecchhhccHHHHHHHHHHhcCC-CCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHH
Confidence 59999999999999999999999864 456788899843 22455789999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHH
Q psy17903 207 YICEQESVMCDFKALETLVETS-GGDMRRAITCLQSC 242 (355)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~ 242 (355)
-+|+.+++.+++++++.|.... ..++|.++++|.-+
T Consensus 359 iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 359 IRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred hhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 9999999999999999999875 78999999988654
No 142
>KOG0731|consensus
Probab=99.67 E-value=3.8e-15 Score=144.43 Aligned_cols=204 Identities=19% Similarity=0.193 Sum_probs=147.9
Q ss_pred CCCCCCcccccHHHHHHHHHHHh-----------cCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 40 RPKTIDDVIEQQEVVSVLKKCLS-----------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 40 ~p~~~~~~vg~~~~~~~l~~~l~-----------~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
.+..|+++.|.++++..|.+.+. +..+|. +||+||||||||.||+++|.+. +.+|+.+++++.
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~svSGSEF 380 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFSVSGSEF 380 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc-----CCceeeechHHH
Confidence 44689999999999988877663 235566 9999999999999999999987 667888888763
Q ss_pred cc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH---------------HHHHHHHHhhh--c
Q psy17903 108 RG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA---------------AQAALRRTMEK--E 164 (355)
Q Consensus 108 ~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~---------------~~~~Ll~~le~--~ 164 (355)
.. ...+++.+...... .|+ +|+|||+|.+... ..|.|+--|+. .
T Consensus 381 vE~~~g~~asrvr~lf~~ar~~---------aP~----iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~ 447 (774)
T KOG0731|consen 381 VEMFVGVGASRVRDLFPLARKN---------APS----IIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFET 447 (774)
T ss_pred HHHhcccchHHHHHHHHHhhcc---------CCe----EEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcC
Confidence 21 22344443332222 122 9999999987432 23445554543 3
Q ss_pred cCCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHH-HH
Q psy17903 165 TKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITC-LQ 240 (355)
Q Consensus 165 ~~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~-l~ 240 (355)
...++++.+||.++-+++++.+.++ .+.+..|+......+++.+++......++..+..++..++|..+.-+.. +.
T Consensus 448 ~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~n 527 (774)
T KOG0731|consen 448 SKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCN 527 (774)
T ss_pred CCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhh
Confidence 4568888899999999999998877 7999999999999999999887766656666666888888876654433 34
Q ss_pred HHHHhh---CCCCCCHHHHHHHhC
Q psy17903 241 SCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 241 ~~~~~~---~~~~It~~~v~~~~~ 261 (355)
.++..+ +...|+..++..++.
T Consensus 528 eaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 528 EAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred HHHHHHHHhccCccchhhHHHHHH
Confidence 444433 456788888887765
No 143
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.66 E-value=1.2e-14 Score=139.44 Aligned_cols=216 Identities=15% Similarity=0.136 Sum_probs=144.2
Q ss_pred CCCCcccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHH
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 119 (355)
..|++++|.+..+..+.+.++.- ...+++|+|++||||+.+|+.+++.... .+.+++.+||..... ..+...+..
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r--~~~pfv~inC~~l~e-~lleseLFG 285 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR--RDFPFVAINCGAIAE-SLLEAELFG 285 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc--CCCCEEEeccccCCh-hHHHHHhcC
Confidence 45889999999998888877532 2234999999999999999999987533 345789999986432 222211111
Q ss_pred HHHhhccCCCCCCCC----CCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCCc------
Q psy17903 120 FAQQTASGFNQDGKP----CPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYVS------ 178 (355)
Q Consensus 120 ~~~~~~~~~~~~~~~----~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~------ 178 (355)
+....+.+....++. .++.++|||||++.|+...|..|+++|++.. .++++|++++..-
T Consensus 286 ~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v~~ 365 (526)
T TIGR02329 286 YEEGAFTGARRGGRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAVQQ 365 (526)
T ss_pred CcccccccccccccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHhhh
Confidence 111111111100111 1356799999999999999999999998642 2457888887432
Q ss_pred -cccccccCCe--eeEEecCCCH--HHHHHHHHHHHH----HcCCCCCHHHHHH-------HHHH-cCCCHHHHHHHHHH
Q psy17903 179 -CIIQPLTSRC--SKFRFKPLAE--NTMLTRLQYICE----QESVMCDFKALET-------LVET-SGGDMRRAITCLQS 241 (355)
Q Consensus 179 -~l~~~l~sr~--~~i~~~~~~~--~~~~~~l~~~~~----~~~~~~~~~~~~~-------l~~~-~~g~~r~~~~~l~~ 241 (355)
.+.+.+-.|. ..+.++|+.+ +++..++...+. ..++.+++++++. |..+ ++||+|++.|.+++
T Consensus 366 g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier 445 (526)
T TIGR02329 366 GRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVER 445 (526)
T ss_pred cchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 2223333343 3677777765 566655555444 3466789999887 6554 59999999999999
Q ss_pred HHHhh---CCCCCCHHHHHHHh
Q psy17903 242 CARLK---GGEGIVNEDVLEVT 260 (355)
Q Consensus 242 ~~~~~---~~~~It~~~v~~~~ 260 (355)
++... .+..|+.+++....
T Consensus 446 ~~i~~~~~~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 446 LALELSAMPAGALTPDVLRALA 467 (526)
T ss_pred HHHhcccCCCCccCHHHhhhhc
Confidence 88764 24578888876443
No 144
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.66 E-value=1e-14 Score=145.24 Aligned_cols=215 Identities=15% Similarity=0.083 Sum_probs=144.0
Q ss_pred CCCCcccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHH
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 119 (355)
.+|++++|.+..+..+.+.++.. ...+++|+|++||||+++|+++++..... ..+++.+||..... +.+...+..
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~--~~pfv~vnc~~~~~-~~~~~elfg 398 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA--AGPYIAVNCQLYPD-EALAEEFLG 398 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc--CCCeEEEECCCCCh-HHHHHHhcC
Confidence 36999999998887777666542 22239999999999999999999886432 34789999986432 222111111
Q ss_pred HHHhhccCCCCCCC-CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------ccc
Q psy17903 120 FAQQTASGFNQDGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCI 180 (355)
Q Consensus 120 ~~~~~~~~~~~~~~-~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~l 180 (355)
... ........|. ..+++.+|||||++.|+...|..|++++++.. .++++|++|+.. ..+
T Consensus 399 ~~~-~~~~~~~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f 477 (638)
T PRK11388 399 SDR-TDSENGRLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLVEQNRF 477 (638)
T ss_pred CCC-cCccCCCCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHHhcCCC
Confidence 000 0000000011 11356799999999999999999999998643 246788887743 123
Q ss_pred cccccCCee--eEEecCCCH--HHHHHHHHHHHHH----c--CCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCCC
Q psy17903 181 IQPLTSRCS--KFRFKPLAE--NTMLTRLQYICEQ----E--SVMCDFKALETLVETS-GGDMRRAITCLQSCARLKGGE 249 (355)
Q Consensus 181 ~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~~~----~--~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~~~ 249 (355)
.+.|--|.. .|.++|+.+ +++..++...+.+ . .+.+++++++.|.++. +||+|++.|.++.+...+.+.
T Consensus 478 ~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~l~~~~~~~~~~ 557 (638)
T PRK11388 478 SRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSVIENLALSSDNG 557 (638)
T ss_pred hHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHHHHHHHHhCCCC
Confidence 333433433 566777765 4666555555443 2 2468999999998876 999999999999988777677
Q ss_pred CCCHHHHHHHh
Q psy17903 250 GIVNEDVLEVT 260 (355)
Q Consensus 250 ~It~~~v~~~~ 260 (355)
.|+.+++...+
T Consensus 558 ~i~~~~lp~~~ 568 (638)
T PRK11388 558 RIRLSDLPEHL 568 (638)
T ss_pred eecHHHCchhh
Confidence 89888876544
No 145
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.65 E-value=2.4e-14 Score=126.77 Aligned_cols=198 Identities=16% Similarity=0.132 Sum_probs=131.2
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH---------HHHHHHH
Q psy17903 52 EVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD---------KVKTFAQ 122 (355)
Q Consensus 52 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~---------~i~~~~~ 122 (355)
.+++.+..++..+. +++|+||||||||++|+++++.++ .+++.+++........+.. ....+..
T Consensus 9 ~l~~~~l~~l~~g~--~vLL~G~~GtGKT~lA~~la~~lg-----~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~ 81 (262)
T TIGR02640 9 RVTSRALRYLKSGY--PVHLRGPAGTGKTTLAMHVARKRD-----RPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIH 81 (262)
T ss_pred HHHHHHHHHHhcCC--eEEEEcCCCCCHHHHHHHHHHHhC-----CCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHH
Confidence 44556666666553 689999999999999999999773 3455565544322222111 0111110
Q ss_pred hh-----ccCCCC-CCC---CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc----------------CCccEEEEecCC
Q psy17903 123 QT-----ASGFNQ-DGK---PCPPFKIVILDEADSMTHAAQAALRRTMEKET----------------KSTRFCLICNYV 177 (355)
Q Consensus 123 ~~-----~~~~~~-~~~---~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~----------------~~~~~Il~~~~~ 177 (355)
.. ...... .+. ....+.+++|||++.++++.++.|+..|++.. +++++|+++|..
T Consensus 82 ~~~~~~~~~~~~~~~g~l~~A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 82 NVVKLEDIVRQNWVDNRLTLAVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred HhhhhhcccceeecCchHHHHHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 00 000000 000 00123599999999999999999999997531 356788888854
Q ss_pred -----ccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc------C----CCHHHHHHHHHHH
Q psy17903 178 -----SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETS------G----GDMRRAITCLQSC 242 (355)
Q Consensus 178 -----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~------~----g~~r~~~~~l~~~ 242 (355)
..+.+++..||..+.+..|+.++..++++..+ .++++.++.+++.. + -.+|.++...+.+
T Consensus 162 ~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~ 236 (262)
T TIGR02640 162 EYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVA 236 (262)
T ss_pred cccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHH
Confidence 24578899999999999999999999988764 46676666665442 1 1378888888888
Q ss_pred HHhhCCCCCCHHHHHHHhC
Q psy17903 243 ARLKGGEGIVNEDVLEVTG 261 (355)
Q Consensus 243 ~~~~~~~~It~~~v~~~~~ 261 (355)
..+.....++.+++.+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~ 255 (262)
T TIGR02640 237 TQQDIPVDVDDEDFVDLCI 255 (262)
T ss_pred HHcCCCCCCCcHHHHHHHH
Confidence 7776566788888887764
No 146
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.65 E-value=9.3e-15 Score=145.45 Aligned_cols=212 Identities=16% Similarity=0.137 Sum_probs=145.7
Q ss_pred cccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCcc-----ccceeeecCCCc--
Q psy17903 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY-----RERILELNASDD-- 107 (355)
Q Consensus 35 ~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~-----~~~~~~~~~~~~-- 107 (355)
++++-+-..++.++|++..++.+.+.+.....+++||+||||+|||++|+.++..+..... +..++.++....
T Consensus 176 l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~lla 255 (758)
T PRK11034 176 LNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLA 255 (758)
T ss_pred HHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhc
Confidence 3444456678999999999999999998877777999999999999999999988643221 122333332211
Q ss_pred --cchHH----HHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH---------HHHHHHHHHhhhccCCccEEE
Q psy17903 108 --RGIQV----IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH---------AAQAALRRTMEKETKSTRFCL 172 (355)
Q Consensus 108 --~~~~~----i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~---------~~~~~Ll~~le~~~~~~~~Il 172 (355)
..... +...+..+... +..+|||||+|.+.. +..+.|..++.+ ....+|.
T Consensus 256 G~~~~Ge~e~rl~~l~~~l~~~-------------~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vIg 320 (758)
T PRK11034 256 GTKYRGDFEKRFKALLKQLEQD-------------TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVIG 320 (758)
T ss_pred ccchhhhHHHHHHHHHHHHHhc-------------CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEEe
Confidence 00112 22222222211 223999999998821 223445566653 4567777
Q ss_pred EecCCc-----cccccccCCeeeEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC------CHHHHHH
Q psy17903 173 ICNYVS-----CIIQPLTSRCSKFRFKPLAENTMLTRLQYICE----QESVMCDFKALETLVETSGG------DMRRAIT 237 (355)
Q Consensus 173 ~~~~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~g------~~r~~~~ 237 (355)
+|+... ...++|.+|+..|.+++|+.++...+|+.... ..++.++++++..+++.+.. -+.+++.
T Consensus 321 ATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaid 400 (758)
T PRK11034 321 STTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_pred cCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHH
Confidence 777542 36899999999999999999999999997654 35789999999988876543 4668999
Q ss_pred HHHHHHHhh-------CCCCCCHHHHHHHhC
Q psy17903 238 CLQSCARLK-------GGEGIVNEDVLEVTG 261 (355)
Q Consensus 238 ~l~~~~~~~-------~~~~It~~~v~~~~~ 261 (355)
.|+.++... ....|+.+++.+++.
T Consensus 401 lldea~a~~~~~~~~~~~~~v~~~~i~~v~~ 431 (758)
T PRK11034 401 VIDEAGARARLMPVSKRKKTVNVADIESVVA 431 (758)
T ss_pred HHHHHHHhhccCcccccccccChhhHHHHHH
Confidence 998876432 123477777777664
No 147
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.64 E-value=3e-14 Score=137.86 Aligned_cols=212 Identities=19% Similarity=0.161 Sum_probs=140.3
Q ss_pred CCCcccccHHHHHHHHHHHhcCCC--CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHH
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGADL--PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~~~--~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 120 (355)
.+..++|++..+..+.+.++.... .+++|+|++||||+.+|+++++..... +.+++.+||..... ..+...+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~--~~p~v~v~c~~~~~-~~~e~~lfG~ 261 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA--DKPLVYLNCAALPE-SLAESELFGH 261 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC--CCCeEEEEcccCCh-HHHHHHhcCc
Confidence 567899999999888887765322 239999999999999999999986432 44788999986432 2221111111
Q ss_pred HHhhccCCC--CCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------cc
Q psy17903 121 AQQTASGFN--QDG-KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SC 179 (355)
Q Consensus 121 ~~~~~~~~~--~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~ 179 (355)
......+.. ..| ...++.++|||||++.|+.+.|..|++++++.. .++++|++++.. ..
T Consensus 262 ~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~ 341 (509)
T PRK05022 262 VKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEVRAGR 341 (509)
T ss_pred cccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHHHcCC
Confidence 111000000 000 111355689999999999999999999997643 256888888753 12
Q ss_pred ccccccCCee--eEEecCCCH--HHHHHHHHHHH----HHc---CCCCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhC
Q psy17903 180 IIQPLTSRCS--KFRFKPLAE--NTMLTRLQYIC----EQE---SVMCDFKALETLVET-SGGDMRRAITCLQSCARLKG 247 (355)
Q Consensus 180 l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~----~~~---~~~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~~ 247 (355)
+.+.|..|.. .|.++|+.+ +++..++...+ .+. ...+++++++.|..+ ++||+|++.|.++.++..+.
T Consensus 342 f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 342 FRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHVISRAALLAR 421 (509)
T ss_pred ccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhcC
Confidence 3444444443 566666654 45555444333 332 356899999999876 49999999999999988764
Q ss_pred CC------CCCHHHHH
Q psy17903 248 GE------GIVNEDVL 257 (355)
Q Consensus 248 ~~------~It~~~v~ 257 (355)
+. .|+.+++.
T Consensus 422 ~~~~~~~~~i~~~~l~ 437 (509)
T PRK05022 422 ARGAGRIVTLEAQHLD 437 (509)
T ss_pred CCccCccceecHHHcC
Confidence 43 36666543
No 148
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.64 E-value=2.5e-15 Score=137.72 Aligned_cols=203 Identities=18% Similarity=0.154 Sum_probs=137.6
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCC--eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHH
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~~~~--~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 120 (355)
.+.++||++.++..+.+.++.-... .+||.|++||||..+|+++++..... +.+++.+||+.. ....+..-+..+
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~--~kPfV~~NCAAl-PesLlESELFGH 297 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRR--DKPFVKLNCAAL-PESLLESELFGH 297 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCccc--CCCceeeecccc-chHHHHHHHhcc
Confidence 5779999999999888887653322 39999999999999999999886543 447899999863 222222222222
Q ss_pred HHhhccC---CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------cc
Q psy17903 121 AQQTASG---FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SC 179 (355)
Q Consensus 121 ~~~~~~~---~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~ 179 (355)
....+.+ .+.+....++++.+|+|||..|+...|.+|++.|++.. .++++|.+||.. .+
T Consensus 298 eKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V~~G~ 377 (550)
T COG3604 298 EKGAFTGAINTRRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMVRDGE 377 (550)
T ss_pred cccccccchhccCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHHHcCc
Confidence 2222222 11112222677899999999999999999999998642 468899999853 11
Q ss_pred c--------------cccccCCeeeEEecCCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHH-cCCCHHHHHHHHHH
Q psy17903 180 I--------------IQPLTSRCSKFRFKPLAENTMLTRLQYICEQES---VMCDFKALETLVET-SGGDMRRAITCLQS 241 (355)
Q Consensus 180 l--------------~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~l~~~-~~g~~r~~~~~l~~ 241 (355)
+ .|+|+.|...|.+ -...++++...+.| ..+++++++.|.++ ++||+|.+.|.+++
T Consensus 378 FRaDLYyRLsV~Pl~lPPLRER~~DIpl------LA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRELen~veR 451 (550)
T COG3604 378 FRADLYYRLSVFPLELPPLRERPEDIPL------LAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRELENVVER 451 (550)
T ss_pred chhhhhhcccccccCCCCcccCCccHHH------HHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 2 3444444443311 12333344444444 46899999999876 49999999999999
Q ss_pred HHHhhCCCCCCHHH
Q psy17903 242 CARLKGGEGIVNED 255 (355)
Q Consensus 242 ~~~~~~~~~It~~~ 255 (355)
++..+ +..++..+
T Consensus 452 avlla-~~~~~~~d 464 (550)
T COG3604 452 AVLLA-GRLTRRGD 464 (550)
T ss_pred HHHHh-cccCCCcc
Confidence 99987 55555444
No 149
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.64 E-value=5.9e-14 Score=125.33 Aligned_cols=204 Identities=19% Similarity=0.170 Sum_probs=128.5
Q ss_pred ccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH-------------
Q psy17903 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD------------- 115 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~------------- 115 (355)
++..+...+...+..+ .+.++|+||+|+|||++++.+++.+..... ....+........+.+..
T Consensus 27 ~~~~~~~~l~~~~~~~-~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~--~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~ 103 (269)
T TIGR03015 27 GHKRAMAYLEYGLSQR-EGFILITGEVGAGKTTLIRNLLKRLDQERV--VAAKLVNTRVDAEDLLRMVAADFGLETEGRD 103 (269)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEEcCCCCCHHHHHHHHHHhcCCCCe--EEeeeeCCCCCHHHHHHHHHHHcCCCCCCCC
Confidence 3445556666555543 224899999999999999999998753221 111111111000111111
Q ss_pred ------HHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc---cCCccEEEEecCC--cc----c
Q psy17903 116 ------KVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE---TKSTRFCLICNYV--SC----I 180 (355)
Q Consensus 116 ------~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~---~~~~~~Il~~~~~--~~----l 180 (355)
.+..+..... ..+ ...+|+|||++.+.....+.|..+.+.. ...+.+++++... .. -
T Consensus 104 ~~~~~~~l~~~l~~~~----~~~----~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~ 175 (269)
T TIGR03015 104 KAALLRELEDFLIEQF----AAG----KRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQ 175 (269)
T ss_pred HHHHHHHHHHHHHHHH----hCC----CCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCch
Confidence 1111110000 011 3359999999999988777765544321 1223445555421 11 1
Q ss_pred cccccCCe-eeEEecCCCHHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh---CCCCCC
Q psy17903 181 IQPLTSRC-SKFRFKPLAENTMLTRLQYICEQES----VMCDFKALETLVETSGGDMRRAITCLQSCARLK---GGEGIV 252 (355)
Q Consensus 181 ~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~---~~~~It 252 (355)
..++.+|. ..+++++++.+++..++...+...+ ..+++++++.|++.++|++|.+...+..+...+ +...|+
T Consensus 176 ~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~ 255 (269)
T TIGR03015 176 LQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIG 255 (269)
T ss_pred hHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCC
Confidence 23466774 4789999999999999999988655 368999999999999999999887777765443 567899
Q ss_pred HHHHHHHhCCC
Q psy17903 253 NEDVLEVTGVI 263 (355)
Q Consensus 253 ~~~v~~~~~~~ 263 (355)
.++|.+++...
T Consensus 256 ~~~v~~~~~~~ 266 (269)
T TIGR03015 256 GEEVREVIAEI 266 (269)
T ss_pred HHHHHHHHHHh
Confidence 99999887543
No 150
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.63 E-value=7.3e-15 Score=134.15 Aligned_cols=208 Identities=19% Similarity=0.210 Sum_probs=142.4
Q ss_pred CCCCcccccHHHHHHHHHHHhcCCC--CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHH
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSGADL--PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~~~~--~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 119 (355)
..++++||.+.....+.+.++.-.. .++||+|++|+||+.+|+.++..... .+..+++.+||+.....-...+ +..
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r-~~~~PFI~~NCa~~~en~~~~e-LFG 152 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSAR-RAEAPFIAFNCAAYSENLQEAE-LFG 152 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhc-ccCCCEEEEEHHHhCcCHHHHH-Hhc
Confidence 3578999999888888777776322 23999999999999999999943322 2677999999987544333322 222
Q ss_pred HHHhhccCCCCCCCC----CCCcEEEEEeCCCCCCHHHHHHHHHHhhh-----------ccCCccEEEEecCC--ccccc
Q psy17903 120 FAQQTASGFNQDGKP----CPPFKIVILDEADSMTHAAQAALRRTMEK-----------ETKSTRFCLICNYV--SCIIQ 182 (355)
Q Consensus 120 ~~~~~~~~~~~~~~~----~~~~~vliiDe~d~l~~~~~~~Ll~~le~-----------~~~~~~~Il~~~~~--~~l~~ 182 (355)
+....+.+ +..+++ .++++++|+||++.|++..|..|+++|++ .+.++++|++|+.. ..+..
T Consensus 153 ~~kGaftG-a~~~k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~l~~~~~~ 231 (403)
T COG1221 153 HEKGAFTG-AQGGKAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTEDLEEAVLA 231 (403)
T ss_pred cccceeec-ccCCcCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccCHHHHHHh
Confidence 22222332 111211 15778999999999999999999999997 34578889888743 34555
Q ss_pred --cccCCee--eEEecCCCH--HHHHHH----HHHHHHHcCCCC---CHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhCC
Q psy17903 183 --PLTSRCS--KFRFKPLAE--NTMLTR----LQYICEQESVMC---DFKALETLVET-SGGDMRRAITCLQSCARLKGG 248 (355)
Q Consensus 183 --~l~sr~~--~i~~~~~~~--~~~~~~----l~~~~~~~~~~~---~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~~~ 248 (355)
.+-.|+. .|+++|+.+ +|+... +...+++.+.++ +++++..+..+ ++||+|++.|.++.++..+..
T Consensus 232 g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~~ 311 (403)
T COG1221 232 GADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVERAVAQASG 311 (403)
T ss_pred hcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhcc
Confidence 6666555 566766654 333333 444555555543 34677777665 599999999999999987744
Q ss_pred CCCC
Q psy17903 249 EGIV 252 (355)
Q Consensus 249 ~~It 252 (355)
..++
T Consensus 312 ~~~~ 315 (403)
T COG1221 312 EGQD 315 (403)
T ss_pred ccCC
Confidence 4444
No 151
>KOG0738|consensus
Probab=99.63 E-value=4.4e-15 Score=131.80 Aligned_cols=179 Identities=22% Similarity=0.257 Sum_probs=120.6
Q ss_pred CCCcccccHHHHHHHHHHH----------hcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc-
Q psy17903 43 TIDDVIEQQEVVSVLKKCL----------SGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG- 109 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l----------~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~- 109 (355)
.|+++.|..++++.|++++ ++.+.|- +|++||||+|||.+|++++.+.. .-|+.++.+...+
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~-----tTFFNVSsstltSK 284 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECG-----TTFFNVSSSTLTSK 284 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhc-----CeEEEechhhhhhh
Confidence 6888889888888888765 3444444 99999999999999999999984 3456666655322
Q ss_pred ----hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH------------HHHHHHHHHhhhcc-----CCc
Q psy17903 110 ----IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH------------AAQAALRRTMEKET-----KST 168 (355)
Q Consensus 110 ----~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~~~Ll~~le~~~-----~~~ 168 (355)
.+.+...+.+++.....+ +|||||||.|.. ...+.|+--|+-.. ..+
T Consensus 285 wRGeSEKlvRlLFemARfyAPS------------tIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~ 352 (491)
T KOG0738|consen 285 WRGESEKLVRLLFEMARFYAPS------------TIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKV 352 (491)
T ss_pred hccchHHHHHHHHHHHHHhCCc------------eeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhcccccccccee
Confidence 234444555555443322 899999999954 12355655554211 234
Q ss_pred cEEE-EecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q psy17903 169 RFCL-ICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239 (355)
Q Consensus 169 ~~Il-~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 239 (355)
+||+ +||-+..+++++++|+. .|.++-|+.+.....++..+.. ....++-.++.|++.+.|.-+.-+..+
T Consensus 353 VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~-~~~~~~~~~~~lae~~eGySGaDI~nv 424 (491)
T KOG0738|consen 353 VMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRS-VELDDPVNLEDLAERSEGYSGADITNV 424 (491)
T ss_pred EEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcc-ccCCCCccHHHHHHHhcCCChHHHHHH
Confidence 5555 56778999999999998 6778778887777777655532 223344557778888777554444333
No 152
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.63 E-value=5e-15 Score=151.02 Aligned_cols=201 Identities=16% Similarity=0.157 Sum_probs=147.2
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCc-----cccceeeecCCC
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELNASD 106 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~ 106 (355)
..+++++.||..++.++|+++.++++.+.+.....++++|+||||+|||++++.++..+.... .+..++.++...
T Consensus 160 ~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~ 239 (852)
T TIGR03346 160 ARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGA 239 (852)
T ss_pred hhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHH
Confidence 467999999999999999999999999999888777899999999999999999999874321 123444544322
Q ss_pred c----cchH----HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHhhhccCCccE
Q psy17903 107 D----RGIQ----VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------AAQAALRRTMEKETKSTRF 170 (355)
Q Consensus 107 ~----~~~~----~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~ 170 (355)
. .... .+...+....... ...||||||+|.+.. +..+.|...+++ ....+
T Consensus 240 l~a~~~~~g~~e~~l~~~l~~~~~~~------------~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~--g~i~~ 305 (852)
T TIGR03346 240 LIAGAKYRGEFEERLKAVLNEVTKSE------------GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR--GELHC 305 (852)
T ss_pred HhhcchhhhhHHHHHHHHHHHHHhcC------------CCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc--CceEE
Confidence 1 1111 2333333322110 234999999998863 345666666653 45677
Q ss_pred EEEecCC-----ccccccccCCeeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC---C---HHHH
Q psy17903 171 CLICNYV-----SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGG---D---MRRA 235 (355)
Q Consensus 171 Il~~~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g---~---~r~~ 235 (355)
|.+|+.. ....+++.+|+..+.++.|+.++...+++..... .++.++++++..++..+.+ | +.++
T Consensus 306 IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkA 385 (852)
T TIGR03346 306 IGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKA 385 (852)
T ss_pred EEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHH
Confidence 8777744 2368999999999999999999999999877654 4677899999998887754 3 7889
Q ss_pred HHHHHHHHHhh
Q psy17903 236 ITCLQSCARLK 246 (355)
Q Consensus 236 ~~~l~~~~~~~ 246 (355)
+..|+.++...
T Consensus 386 idlld~a~a~~ 396 (852)
T TIGR03346 386 IDLIDEAAARI 396 (852)
T ss_pred HHHHHHHHHHH
Confidence 99998877543
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.63 E-value=1.5e-14 Score=147.21 Aligned_cols=197 Identities=14% Similarity=0.120 Sum_probs=142.8
Q ss_pred ccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCc-----cccceeeecCCCc-
Q psy17903 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELNASDD- 107 (355)
Q Consensus 34 ~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~- 107 (355)
.++++-+...++.++|++..++++.+++.....++++|+||||||||++++.++..+.... .+..++.++....
T Consensus 168 ~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ 247 (821)
T CHL00095 168 NLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLL 247 (821)
T ss_pred HHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHh
Confidence 3444556778999999999999999999888878899999999999999999999975321 1245666665421
Q ss_pred ---cchH----HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHhhhccCCccEEE
Q psy17903 108 ---RGIQ----VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------AAQAALRRTMEKETKSTRFCL 172 (355)
Q Consensus 108 ---~~~~----~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~Il 172 (355)
.... .+...+...... +..||||||+|.+.. +..+.|...+.+ ..+.+|.
T Consensus 248 ag~~~~ge~e~rl~~i~~~~~~~-------------~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g~l~~Ig 312 (821)
T CHL00095 248 AGTKYRGEFEERLKRIFDEIQEN-------------NNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--GELQCIG 312 (821)
T ss_pred ccCCCccHHHHHHHHHHHHHHhc-------------CCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--CCcEEEE
Confidence 1112 333333333211 224999999998753 245666667764 3567777
Q ss_pred EecCC-----ccccccccCCeeeEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC------CHHHHHH
Q psy17903 173 ICNYV-----SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE----QESVMCDFKALETLVETSGG------DMRRAIT 237 (355)
Q Consensus 173 ~~~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~g------~~r~~~~ 237 (355)
+|+.. ....+++.+|+..+.+..|+.++...+++.... ..++.++++++..++..+++ -++++++
T Consensus 313 aTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaid 392 (821)
T CHL00095 313 ATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAID 392 (821)
T ss_pred eCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHH
Confidence 77743 235689999999999999999998888876543 24677999999999988765 3778999
Q ss_pred HHHHHHHh
Q psy17903 238 CLQSCARL 245 (355)
Q Consensus 238 ~l~~~~~~ 245 (355)
.|+.++..
T Consensus 393 lld~a~a~ 400 (821)
T CHL00095 393 LLDEAGSR 400 (821)
T ss_pred HHHHHHHH
Confidence 99877653
No 154
>KOG1942|consensus
Probab=99.62 E-value=4.6e-14 Score=121.03 Aligned_cols=121 Identities=22% Similarity=0.257 Sum_probs=101.6
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCC-------------ccccccccCCeeeEEecCCCHHHHHHHH
Q psy17903 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV-------------SCIIQPLTSRCSKFRFKPLAENTMLTRL 205 (355)
Q Consensus 139 ~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~-------------~~l~~~l~sr~~~i~~~~~~~~~~~~~l 205 (355)
.++||||++.|.-+....|.+.+|.+ -.+++||++|.- +-+.+.+..|..++.-.+++++++++++
T Consensus 298 GVLFIDEVhMLDiEcFTyL~kalES~-iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii 376 (456)
T KOG1942|consen 298 GVLFIDEVHMLDIECFTYLHKALESP-IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQII 376 (456)
T ss_pred cceEeeehhhhhhHHHHHHHHHhcCC-CCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHH
Confidence 49999999999999999999999864 456788888742 3356778999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHH---hhCCCCCCHHHHHHHh
Q psy17903 206 QYICEQESVMCDFKALETLVETS-GGDMRRAITCLQSCAR---LKGGEGIVNEDVLEVT 260 (355)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~---~~~~~~It~~~v~~~~ 260 (355)
+.+++.+++.++++++..++... ..++|.+++.|--+.. ..++..|..++++++.
T Consensus 377 ~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 377 KIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred HHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 99999999999999999999864 6789999999864433 3366789888888754
No 155
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.61 E-value=7.6e-15 Score=149.17 Aligned_cols=200 Identities=17% Similarity=0.169 Sum_probs=145.7
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCc-----cccceeeecCCC
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELNASD 106 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~ 106 (355)
..+++++.||..++.++|+++.++++.+.+.....++++|+||||||||++++.++..+..+. .+..++.++...
T Consensus 165 ~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 165 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred hhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 467899999999999999999999999999888877899999999999999999999985421 123455554433
Q ss_pred c----cchH----HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------HHHHHHHHHhhhccCCccE
Q psy17903 107 D----RGIQ----VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------AAQAALRRTMEKETKSTRF 170 (355)
Q Consensus 107 ~----~~~~----~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------~~~~~Ll~~le~~~~~~~~ 170 (355)
. .... .+...+....... ...||||||+|.+.. +.++.|...+++ ....+
T Consensus 245 l~ag~~~~g~~e~~lk~~~~~~~~~~------------~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~--g~l~~ 310 (857)
T PRK10865 245 LVAGAKYRGEFEERLKGVLNDLAKQE------------GNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHC 310 (857)
T ss_pred hhhccchhhhhHHHHHHHHHHHHHcC------------CCeEEEEecHHHhccCCCCccchhHHHHhcchhhc--CCCeE
Confidence 1 1111 2333333322211 224999999999963 346777777764 46778
Q ss_pred EEEecCCc-----cccccccCCeeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHH
Q psy17903 171 CLICNYVS-----CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGG------DMRRA 235 (355)
Q Consensus 171 Il~~~~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~~ 235 (355)
|.+|+... ...+++.+|+..|.+..|+.++...+++..... .++.++++++...+..+++ -+.++
T Consensus 311 IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkA 390 (857)
T PRK10865 311 VGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKA 390 (857)
T ss_pred EEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHH
Confidence 88777543 367999999999999999999999999877653 3678889888887766643 35677
Q ss_pred HHHHHHHHHh
Q psy17903 236 ITCLQSCARL 245 (355)
Q Consensus 236 ~~~l~~~~~~ 245 (355)
+..++.++..
T Consensus 391 i~LiD~aaa~ 400 (857)
T PRK10865 391 IDLIDEAASS 400 (857)
T ss_pred HHHHHHHhcc
Confidence 7777766653
No 156
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.61 E-value=4.6e-14 Score=119.99 Aligned_cols=190 Identities=20% Similarity=0.245 Sum_probs=134.9
Q ss_pred cccCCCCCCcccccHHHHHHHHHH----HhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHH
Q psy17903 37 EKYRPKTIDDVIEQQEVVSVLKKC----LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQV 112 (355)
Q Consensus 37 ~k~~p~~~~~~vg~~~~~~~l~~~----l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (355)
....|..+++++|-+..++.|.+. +.+....|+|++|++|||||++++++..++.... ..++++...+......
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G--LRlIev~k~~L~~l~~ 96 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG--LRLIEVSKEDLGDLPE 96 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC--ceEEEECHHHhccHHH
Confidence 344567899999999888777654 4555555699999999999999999999987654 4688888776555555
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHh----hhccCCccEEEEecCCccccc-----
Q psy17903 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA-QAALRRTM----EKETKSTRFCLICNYVSCIIQ----- 182 (355)
Q Consensus 113 i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~-~~~Ll~~l----e~~~~~~~~Il~~~~~~~l~~----- 182 (355)
+.+.+.. .+ .+=|||+||...=..+. -..|..+| +..|.|+++..|+|..+-+.+
T Consensus 97 l~~~l~~---~~------------~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~ 161 (249)
T PF05673_consen 97 LLDLLRD---RP------------YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDR 161 (249)
T ss_pred HHHHHhc---CC------------CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhc
Confidence 5544442 21 12299999976443333 34455554 456788888888875432211
Q ss_pred ------------------cccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHcCCCHHHHHHH
Q psy17903 183 ------------------PLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDF-----KALETLVETSGGDMRRAITC 238 (355)
Q Consensus 183 ------------------~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~l~~~~~g~~r~~~~~ 238 (355)
+|..|+. .+.|.+++.++..++++..+++.|+.+++ ++++......+.+.|.|.+.
T Consensus 162 ~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF 241 (249)
T PF05673_consen 162 EDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQF 241 (249)
T ss_pred cCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 2345554 79999999999999999999999999985 44444445556789999988
Q ss_pred HHHHH
Q psy17903 239 LQSCA 243 (355)
Q Consensus 239 l~~~~ 243 (355)
++.+.
T Consensus 242 ~~~l~ 246 (249)
T PF05673_consen 242 IDDLA 246 (249)
T ss_pred HHHHh
Confidence 87654
No 157
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.60 E-value=5.1e-14 Score=127.57 Aligned_cols=217 Identities=14% Similarity=0.135 Sum_probs=131.6
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCcc----ccceeeec----C-------
Q psy17903 40 RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY----RERILELN----A------- 104 (355)
Q Consensus 40 ~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~----~~~~~~~~----~------- 104 (355)
.|..|.+++||++++..+.-.+-.....|+||+|+||+|||++|+++++.+.+-.. .+.+..+. .
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 82 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTT 82 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCc
Confidence 57789999999999998886554333467999999999999999999999842100 00000000 0
Q ss_pred ---------------CC--ccchHHHHHHHHHHHHhhccCCCCCCC-CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-
Q psy17903 105 ---------------SD--DRGIQVIRDKVKTFAQQTASGFNQDGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKET- 165 (355)
Q Consensus 105 ---------------~~--~~~~~~i~~~i~~~~~~~~~~~~~~~~-~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~- 165 (355)
+. ..+...+...+. .+..... .|. ..+++.++++||++.+++..|+.|+..|++..
T Consensus 83 ~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~----~g~~~~~-~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v 157 (334)
T PRK13407 83 MIERPTPVVDLPLGVTEDRVVGALDIERALT----RGEKAFE-PGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGEN 157 (334)
T ss_pred ccccCCccccCCCCCCcceeecchhhhhhhh----cCCeeec-CCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCe
Confidence 00 000001111100 0000000 010 01345699999999999999999999998643
Q ss_pred ------------CCccEEEEecCCc-cccccccCCee-eEEecCCCH-HHHHHHHHHHHH--------------------
Q psy17903 166 ------------KSTRFCLICNYVS-CIIQPLTSRCS-KFRFKPLAE-NTMLTRLQYICE-------------------- 210 (355)
Q Consensus 166 ------------~~~~~Il~~~~~~-~l~~~l~sr~~-~i~~~~~~~-~~~~~~l~~~~~-------------------- 210 (355)
..++++.+.|..+ .+.+++..|+. .+.+.++.. ++..+++.....
T Consensus 158 ~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (334)
T PRK13407 158 VVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLR 237 (334)
T ss_pred EEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCH
Confidence 2233444444323 46778888986 567766655 554555544211
Q ss_pred ---------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHHHH---hhCCCCCCHHHHHHHhC
Q psy17903 211 ---------QESVMCDFKALETLVETS---G-GDMRRAITCLQSCAR---LKGGEGIVNEDVLEVTG 261 (355)
Q Consensus 211 ---------~~~~~~~~~~~~~l~~~~---~-g~~r~~~~~l~~~~~---~~~~~~It~~~v~~~~~ 261 (355)
-..+.++++.++++++.+ + ..+|..+..+..+.. +.+...|+.+|+..+..
T Consensus 238 ~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~ 304 (334)
T PRK13407 238 GRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVAT 304 (334)
T ss_pred HHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHH
Confidence 124668888888877654 2 356666665554433 33778899999987763
No 158
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.60 E-value=3.6e-14 Score=143.87 Aligned_cols=195 Identities=19% Similarity=0.323 Sum_probs=136.5
Q ss_pred CcccccHHHHHHHHHHHhc-------CCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH
Q psy17903 45 DDVIEQQEVVSVLKKCLSG-------ADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~-------~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (355)
+.++||+.++..+.+.+.. .+.|. ++|+||+|+|||.+|+++++.+++... .++.+|+++......+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~--~~~~~dmse~~~~~~~~~ 643 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQ--NLITINMSEFQEAHTVSR 643 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCc--ceEEEeHHHhhhhhhhcc
Confidence 4688999999999888743 12222 899999999999999999999875432 566677654322211111
Q ss_pred HHHHHHHhhccCCCCCCC-----CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC--
Q psy17903 116 KVKTFAQQTASGFNQDGK-----PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-- 177 (355)
Q Consensus 116 ~i~~~~~~~~~~~~~~~~-----~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-- 177 (355)
.+... .+..+....|. ...++.||++||++.+.++.++.|+.+++++. .+++||+++|-.
T Consensus 644 l~g~~--~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~ 721 (852)
T TIGR03345 644 LKGSP--PGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSD 721 (852)
T ss_pred ccCCC--CCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchH
Confidence 10000 00000000000 00144599999999999999999999998764 678899998731
Q ss_pred ---------c------------------cccccccCCeeeEEecCCCHHHHHHHHHHHHHH-------c-C--CCCCHHH
Q psy17903 178 ---------S------------------CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ-------E-S--VMCDFKA 220 (355)
Q Consensus 178 ---------~------------------~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~-------~-~--~~~~~~~ 220 (355)
. .+.|++.+|+.+|.|.+++.+++..++...+.. . + +.+++++
T Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a 801 (852)
T TIGR03345 722 LIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKENHGAELVYSEAL 801 (852)
T ss_pred HHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHH
Confidence 0 145778899999999999999999998776643 1 4 4689999
Q ss_pred HHHHHHHcCC---CHHHHHHHHHHHH
Q psy17903 221 LETLVETSGG---DMRRAITCLQSCA 243 (355)
Q Consensus 221 ~~~l~~~~~g---~~r~~~~~l~~~~ 243 (355)
+++|++.+.+ ..|.+.+.++...
T Consensus 802 ~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 802 VEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred HHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 9999998866 7899988887643
No 159
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.60 E-value=4.2e-14 Score=139.85 Aligned_cols=208 Identities=16% Similarity=0.136 Sum_probs=139.5
Q ss_pred ccccccCCCCCCcccccHHHHHHHHHHHhc-----------CCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceee
Q psy17903 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------ADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILE 101 (355)
Q Consensus 34 ~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~ 101 (355)
.|........|+++.|.+....++.+.+.- +..+ +++|+||||+|||++++++++++. .+++.
T Consensus 141 ~~~~~~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~-----~~f~~ 215 (644)
T PRK10733 141 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFT 215 (644)
T ss_pred ccCchhhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcC-----CCEEE
Confidence 334444456788999998888777765531 1223 499999999999999999999873 35666
Q ss_pred ecCCCcc------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHh
Q psy17903 102 LNASDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTM 161 (355)
Q Consensus 102 ~~~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~~l 161 (355)
+++++.. +...++..+...... .| .+|||||+|.+... ..+.|+..|
T Consensus 216 is~~~~~~~~~g~~~~~~~~~f~~a~~~---------~P----~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~m 282 (644)
T PRK10733 216 ISGSDFVEMFVGVGASRVRDMFEQAKKA---------AP----CIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM 282 (644)
T ss_pred EehHHhHHhhhcccHHHHHHHHHHHHhc---------CC----cEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhh
Confidence 6665421 122333333332211 12 29999999998431 235555556
Q ss_pred hhc--cCCccEEEEecCCccccccccC--Ce-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC----CH
Q psy17903 162 EKE--TKSTRFCLICNYVSCIIQPLTS--RC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG----DM 232 (355)
Q Consensus 162 e~~--~~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g----~~ 232 (355)
+.. ...+++|.+||.++.+.+++.+ |+ ..+.|+.|+.++..++++.++++..+.- +..+..+++.+.| |+
T Consensus 283 dg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~d~~~la~~t~G~sgadl 361 (644)
T PRK10733 283 DGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DIDAAIIARGTPGFSGADL 361 (644)
T ss_pred hcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cCCHHHHHhhCCCCCHHHH
Confidence 543 3457888899999999999986 55 3899999999999999998887644322 2235667888877 56
Q ss_pred HHHHHHHHHHHHhhCCCCCCHHHHHHHh
Q psy17903 233 RRAITCLQSCARLKGGEGIVNEDVLEVT 260 (355)
Q Consensus 233 r~~~~~l~~~~~~~~~~~It~~~v~~~~ 260 (355)
..+.+.....+...+...|+.+++.++.
T Consensus 362 ~~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 362 ANLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 5555555444443356779999988765
No 160
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.60 E-value=9.4e-14 Score=140.19 Aligned_cols=229 Identities=17% Similarity=0.198 Sum_probs=145.3
Q ss_pred CCCCCcccccHHHHHHHHHHHhc-----------C-C-CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCLSG-----------A-D-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l~~-----------~-~-~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
..+|+++.|.+.+++.+.+.+.. + . ..++|||||||||||++++++++.+. ..++.+++.+.
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~-----~~~i~i~~~~i 248 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAG-----AYFISINGPEI 248 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhC-----CeEEEEecHHH
Confidence 34799999999999999887732 1 1 22399999999999999999999983 34566665432
Q ss_pred c------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhhhcc--CCc
Q psy17903 108 R------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEKET--KST 168 (355)
Q Consensus 108 ~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~~--~~~ 168 (355)
. ....++..+...... ...+|||||+|.+.. ..++.|+..|+... ..+
T Consensus 249 ~~~~~g~~~~~l~~lf~~a~~~-------------~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~v 315 (733)
T TIGR01243 249 MSKYYGESEERLREIFKEAEEN-------------APSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRV 315 (733)
T ss_pred hcccccHHHHHHHHHHHHHHhc-------------CCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCE
Confidence 1 112233333322211 113999999998753 23566777776432 345
Q ss_pred cEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 169 RFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCD-FKALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 169 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
++|.++|.+..+.+++++ |+. .+.|..|+.++..++++..+.. ..+. +..++.+++.++|....-+..+...+.
T Consensus 316 ivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~--~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~ 393 (733)
T TIGR01243 316 IVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRN--MPLAEDVDLDKLAEVTHGFVGADLAALAKEAA 393 (733)
T ss_pred EEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcC--CCCccccCHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 666788888889999887 443 7899999999999999966543 3343 345788888888765543333322111
Q ss_pred hh-----------------------CCCCCCHHHHHHHhCCCChHHHHHHHhc---------CCHHHHHHHHHHHHH
Q psy17903 245 LK-----------------------GGEGIVNEDVLEVTGVIPNPWIEKLLKV---------DSFQVLEKYIEDLIL 289 (355)
Q Consensus 245 ~~-----------------------~~~~It~~~v~~~~~~~~~~~~~~l~~~---------~~~~~~~~~l~~l~~ 289 (355)
.. ..-.++.+++..++....+....+.+.. +..+.+++.+.+.+.
T Consensus 394 ~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~~~~~~~~~~~di~g~~~~k~~l~~~v~ 470 (733)
T TIGR01243 394 MAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREVLVEVPNVRWSDIGGLEEVKQELREAVE 470 (733)
T ss_pred HHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhccccccchhhccccccchhhcccHHHHHHHHHHHHH
Confidence 10 1124677788777765554433322211 345556666666544
No 161
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.59 E-value=1.3e-14 Score=145.55 Aligned_cols=209 Identities=20% Similarity=0.223 Sum_probs=138.7
Q ss_pred cccccHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHH
Q psy17903 46 DVIEQQEVVSVLKKCLSG------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~------~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 119 (355)
+..|.+.+++++..++.. ...+.++|+||||+|||++++.+++.+.. +++.++.........+......
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~-----~~~~i~~~~~~d~~~i~g~~~~ 397 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR-----KYVRMALGGVRDEAEIRGHRRT 397 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEEcCCCCCHHHhccchhc
Confidence 488999999999877642 23344999999999999999999999843 4555554443333333222111
Q ss_pred HHHhhcc----CCCCCCCCCCCcEEEEEeCCCCCCHHH----HHHHHHHhhhc---------------cCCccEEEEecC
Q psy17903 120 FAQQTAS----GFNQDGKPCPPFKIVILDEADSMTHAA----QAALRRTMEKE---------------TKSTRFCLICNY 176 (355)
Q Consensus 120 ~~~~~~~----~~~~~~~~~~~~~vliiDe~d~l~~~~----~~~Ll~~le~~---------------~~~~~~Il~~~~ 176 (355)
+...... .....+ ....+++|||+|.+..+. +++|+.+++.. -.++.||+|+|.
T Consensus 398 ~~g~~~G~~~~~l~~~~---~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~ 474 (784)
T PRK10787 398 YIGSMPGKLIQKMAKVG---VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNS 474 (784)
T ss_pred cCCCCCcHHHHHHHhcC---CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCC
Confidence 1100000 000000 022499999999998764 58999998742 145677777776
Q ss_pred CccccccccCCeeeEEecCCCHHHHHHHHHHHHHH----------cCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHHH
Q psy17903 177 VSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----------ESVMCDFKALETLVETS--GGDMRRAITCLQSCAR 244 (355)
Q Consensus 177 ~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~l~~~~--~g~~r~~~~~l~~~~~ 244 (355)
. .+.++|++||.++.|.+++.++...++++.+.. ..+.++++++..+++.+ .-..|.+.+.+++++.
T Consensus 475 ~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r 553 (784)
T PRK10787 475 M-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCR 553 (784)
T ss_pred C-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHH
Confidence 6 599999999999999999999999998887741 13568999999999754 2234444444444433
Q ss_pred hh------CC----CCCCHHHHHHHhCCC
Q psy17903 245 LK------GG----EGIVNEDVLEVTGVI 263 (355)
Q Consensus 245 ~~------~~----~~It~~~v~~~~~~~ 263 (355)
.. ++ -.|+.+++.+.++..
T Consensus 554 ~~l~~~~~~~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 554 KAVKQLLLDKSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHHHHHhcCCCceeeecHHHHHHHhCCC
Confidence 21 21 258888888888755
No 162
>KOG0743|consensus
Probab=99.59 E-value=2.3e-14 Score=130.34 Aligned_cols=159 Identities=18% Similarity=0.207 Sum_probs=114.9
Q ss_pred CCCcccc--ccCCCCCCcccccHHHHHH----HHHHHhc-------CCCC--eEEEECCCCCCHHHHHHHHHHHhcCCcc
Q psy17903 31 KPVPWVE--KYRPKTIDDVIEQQEVVSV----LKKCLSG-------ADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMY 95 (355)
Q Consensus 31 ~~~~~~~--k~~p~~~~~~vg~~~~~~~----l~~~l~~-------~~~~--~~ll~Gp~G~GKt~la~~l~~~l~~~~~ 95 (355)
....|.- --+|.+|+-++-.+..++. |..++++ |..- .||||||||||||+++.|+|+.+
T Consensus 185 ~~~~W~~v~f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L----- 259 (457)
T KOG0743|consen 185 KGGEWRSVGFPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL----- 259 (457)
T ss_pred cCCcceecCCCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc-----
Confidence 3556643 3357889999877665554 4555543 2221 29999999999999999999999
Q ss_pred ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH------------------HHHHHH
Q psy17903 96 RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH------------------AAQAAL 157 (355)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------------------~~~~~L 157 (355)
+++++.++-+....-.+++..+.... ++-||+|+|+|+-.. -....|
T Consensus 260 ~ydIydLeLt~v~~n~dLr~LL~~t~---------------~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGL 324 (457)
T KOG0743|consen 260 NYDIYDLELTEVKLDSDLRHLLLATP---------------NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGL 324 (457)
T ss_pred CCceEEeeeccccCcHHHHHHHHhCC---------------CCcEEEEeecccccccccccccccccccCCcceeehHHh
Confidence 55666777666655556665555422 334999999997622 123568
Q ss_pred HHHhhhccCCc----cEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHH
Q psy17903 158 RRTMEKETKST----RFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYIC 209 (355)
Q Consensus 158 l~~le~~~~~~----~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~ 209 (355)
++.++..-..| ++|||||..++++|||.++++ ++++..-+.+.+...+.+.+
T Consensus 325 LNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL 383 (457)
T KOG0743|consen 325 LNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYL 383 (457)
T ss_pred hhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhc
Confidence 88888654433 789999999999999999887 78888888888887777664
No 163
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.59 E-value=2.8e-14 Score=127.74 Aligned_cols=151 Identities=17% Similarity=0.247 Sum_probs=107.8
Q ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc------chHHHHHHHHHHHHhhccCCCCCCCCCCC
Q psy17903 65 DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPP 137 (355)
Q Consensus 65 ~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~ 137 (355)
+.|. ++||||||||||.+|+++++++. .+++.+++++.. +...+++.+....... ...+.+|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg-----~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a----~~~~aPc-- 214 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMG-----IEPIVMSAGELESENAGEPGKLIRQRYREAADII----KKKGKMS-- 214 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcC-----CCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHh----hccCCCe--
Confidence 3344 99999999999999999999984 456666665422 2245666555544321 0123444
Q ss_pred cEEEEEeCCCCCCHH---------H---HHHHHHHhhh--------------ccCCccEEEEecCCccccccccC--Cee
Q psy17903 138 FKIVILDEADSMTHA---------A---QAALRRTMEK--------------ETKSTRFCLICNYVSCIIQPLTS--RCS 189 (355)
Q Consensus 138 ~~vliiDe~d~l~~~---------~---~~~Ll~~le~--------------~~~~~~~Il~~~~~~~l~~~l~s--r~~ 189 (355)
+|||||+|.+.+. . ...|+..++. ....+.+|.+||+++.++++|++ |+.
T Consensus 215 --VLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfD 292 (413)
T PLN00020 215 --CLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRME 292 (413)
T ss_pred --EEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCC
Confidence 9999999987541 1 1356666543 24457788899999999999998 544
Q ss_pred eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Q psy17903 190 KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGD 231 (355)
Q Consensus 190 ~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~ 231 (355)
.+ +..|+.++..++++.+++..+ ++.+.+..|+...+|-
T Consensus 293 k~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 293 KF-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred ce-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 43 458999999999999988764 5678889999988775
No 164
>KOG0728|consensus
Probab=99.59 E-value=4.2e-14 Score=118.72 Aligned_cols=211 Identities=20% Similarity=0.260 Sum_probs=136.7
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccc
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRER 98 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-------------~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~ 98 (355)
+.+.++|..-.+++-+.|.+..+..++..++- ..+..+|+|||||+|||.+|+++++.. ...
T Consensus 134 sLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht-----~c~ 208 (404)
T KOG0728|consen 134 SLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT-----DCT 208 (404)
T ss_pred HHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc-----ceE
Confidence 45667776556676677789999998888742 123349999999999999999999986 345
Q ss_pred eeeecCCCc------cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHh
Q psy17903 99 ILELNASDD------RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTM 161 (355)
Q Consensus 99 ~~~~~~~~~------~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~l 161 (355)
++.+++++. .+...+++.+--..... ..+||.||+|.+.. +.|...+++|
T Consensus 209 firvsgselvqk~igegsrmvrelfvmareha-------------psiifmdeidsigs~r~e~~~ggdsevqrtmlell 275 (404)
T KOG0728|consen 209 FIRVSGSELVQKYIGEGSRMVRELFVMAREHA-------------PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELL 275 (404)
T ss_pred EEEechHHHHHHHhhhhHHHHHHHHHHHHhcC-------------CceEeeecccccccccccCCCCccHHHHHHHHHHH
Confidence 667766542 11122333322222211 12999999998842 3455555555
Q ss_pred hh-----ccCCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Q psy17903 162 EK-----ETKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233 (355)
Q Consensus 162 e~-----~~~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r 233 (355)
.. ...+..+|++||..+-+++++.+.++ .++|++|+++...++++-..++.++.-- -.+..+++.-+|--+
T Consensus 276 nqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rg-i~l~kiaekm~gasg 354 (404)
T KOG0728|consen 276 NQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRG-INLRKIAEKMPGASG 354 (404)
T ss_pred HhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcc-cCHHHHHHhCCCCcc
Confidence 43 35678899999999999999998877 6999999999999999887766432110 123445555433222
Q ss_pred -HHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 234 -RAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 234 -~~~~~l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
.+...+-.+..|+ ..-.+|.+|++-+++
T Consensus 355 aevk~vcteagm~alrerrvhvtqedfemav~ 386 (404)
T KOG0728|consen 355 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVA 386 (404)
T ss_pred chhhhhhhhhhHHHHHHhhccccHHHHHHHHH
Confidence 2222222222333 234588888876554
No 165
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.58 E-value=6.1e-14 Score=139.67 Aligned_cols=189 Identities=19% Similarity=0.265 Sum_probs=126.5
Q ss_pred cccccHHHHHHHHHHHhcC--------CC-CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH
Q psy17903 46 DVIEQQEVVSVLKKCLSGA--------DL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK 116 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~~--------~~-~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~ 116 (355)
.++||+++++.+...+... ++ .++||+||+|||||.+|+.+++.+. .+++.+++++......+...
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~-----~~~i~id~se~~~~~~~~~L 533 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHTVSRL 533 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC-----CCcEEeechhhcccccHHHH
Confidence 4789999999999888631 11 2399999999999999999999983 35667777654322222111
Q ss_pred HHHHHHhhccCCCCCC-----CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC---
Q psy17903 117 VKTFAQQTASGFNQDG-----KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV--- 177 (355)
Q Consensus 117 i~~~~~~~~~~~~~~~-----~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~--- 177 (355)
+.. . .+..+....+ -...++.||++||+|.+.++.++.|+.+|+++. .+++||+++|.-
T Consensus 534 iG~-~-~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~g~~~ 611 (758)
T PRK11034 534 IGA-P-PGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRE 611 (758)
T ss_pred cCC-C-CCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCcCHHH
Confidence 110 0 0000000000 000144699999999999999999999998642 367799998821
Q ss_pred ----------------------ccccccccCCee-eEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHH
Q psy17903 178 ----------------------SCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQ-------ES--VMCDFKALETLV 225 (355)
Q Consensus 178 ----------------------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~~~~l~ 225 (355)
..+.|.+..|.. ++.|.+++.+++..++...+.+ .| +.++++++++|+
T Consensus 612 ~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~~~l~ 691 (758)
T PRK11034 612 TERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEARDWLA 691 (758)
T ss_pred HhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHHHHHH
Confidence 114477788886 8999999999999988766542 23 457899999999
Q ss_pred HHc---CCCHHHHHHHHHH
Q psy17903 226 ETS---GGDMRRAITCLQS 241 (355)
Q Consensus 226 ~~~---~g~~r~~~~~l~~ 241 (355)
... .-..|-+.+.+++
T Consensus 692 ~~~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 692 EKGYDRAMGARPMARVIQD 710 (758)
T ss_pred HhCCCCCCCCchHHHHHHH
Confidence 764 2234555555544
No 166
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.1e-13 Score=131.97 Aligned_cols=224 Identities=20% Similarity=0.283 Sum_probs=151.9
Q ss_pred CCccccccCCC--------CC-CcccccHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccc
Q psy17903 32 PVPWVEKYRPK--------TI-DDVIEQQEVVSVLKKCLSG------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYR 96 (355)
Q Consensus 32 ~~~~~~k~~p~--------~~-~~~vg~~~~~~~l~~~l~~------~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~ 96 (355)
+.||..+-.-. -+ .+-.|-+++++++.+++.- -..|-++|+||||+|||++++.+|+.++.
T Consensus 301 ~lPW~~~sk~~~Dl~~a~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~R---- 376 (782)
T COG0466 301 DLPWGKRSKDKLDLKKAEKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGR---- 376 (782)
T ss_pred hCCCccccchhhhHHHHHHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCC----
Confidence 68886643321 11 3556889999999887732 12234999999999999999999999955
Q ss_pred cceeeecCCCccchHHHHHHHHHHHHhhc----cCCCCCCCCCCCcEEEEEeCCCCCCHH----HHHHHHHHhhhc----
Q psy17903 97 ERILELNASDDRGIQVIRDKVKTFAQQTA----SGFNQDGKPCPPFKIVILDEADSMTHA----AQAALRRTMEKE---- 164 (355)
Q Consensus 97 ~~~~~~~~~~~~~~~~i~~~i~~~~~~~~----~~~~~~~~~~~~~~vliiDe~d~l~~~----~~~~Ll~~le~~---- 164 (355)
.|+.++-...++..+|+..-+.+...-+ .+....+ ....+++|||+|.|+.+ -..+|+++|+-.
T Consensus 377 -kfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~---~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~ 452 (782)
T COG0466 377 -KFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAG---VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNT 452 (782)
T ss_pred -CEEEEecCccccHHHhccccccccccCChHHHHHHHHhC---CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCc
Confidence 4555555554555454433222211100 0000000 12349999999999753 357888888521
Q ss_pred -----------cCCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHH-----Hc-----CCCCCHHHHHH
Q psy17903 165 -----------TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE-----QE-----SVMCDFKALET 223 (355)
Q Consensus 165 -----------~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~-----~~-----~~~~~~~~~~~ 223 (355)
-.++.||.|+|..+.+..+|..|..++++..++++|-..+.++++- .. .+.++++++..
T Consensus 453 F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~ 532 (782)
T COG0466 453 FSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKD 532 (782)
T ss_pred hhhccccCccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHH
Confidence 1357899999999999999999999999999999999888776642 33 35689999999
Q ss_pred HHHHc--CCCHHHHHHHHHHHHHhh------C--CC--CCCHHHHHHHhCCC
Q psy17903 224 LVETS--GGDMRRAITCLQSCARLK------G--GE--GIVNEDVLEVTGVI 263 (355)
Q Consensus 224 l~~~~--~g~~r~~~~~l~~~~~~~------~--~~--~It~~~v~~~~~~~ 263 (355)
+++.. ..-+|.+...+.++++.. + .. .|+.+++.+.++..
T Consensus 533 iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~~~~i~~~~l~~yLG~~ 584 (782)
T COG0466 533 IIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKSIVKIDEKNLKKYLGVP 584 (782)
T ss_pred HHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCcccceeeCHHHHHHHhCCc
Confidence 98765 456777777776665543 1 11 47788888877654
No 167
>KOG0730|consensus
Probab=99.57 E-value=2.4e-13 Score=128.52 Aligned_cols=240 Identities=17% Similarity=0.188 Sum_probs=170.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHhc-----------C-CCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCC
Q psy17903 40 RPKTIDDVIEQQEVVSVLKKCLSG-----------A-DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (355)
Q Consensus 40 ~p~~~~~~vg~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 106 (355)
.|.. +++.|....+..+...+.- + ..| .+|+|||||+|||.++++++++.. ..++.++++.
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~-----a~~~~i~~pe 253 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYG-----AFLFLINGPE 253 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhC-----ceeEecccHH
Confidence 3444 5777777777777766521 1 222 399999999999999999999973 4566777764
Q ss_pred cc------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH----------HHHHHHHHHhhhcc--CCc
Q psy17903 107 DR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH----------AAQAALRRTMEKET--KST 168 (355)
Q Consensus 107 ~~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~----------~~~~~Ll~~le~~~--~~~ 168 (355)
.. ....++..+........ .-+++|||+|.+.+ .....|+.+++... ..+
T Consensus 254 li~k~~gEte~~LR~~f~~a~k~~~------------psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~v 321 (693)
T KOG0730|consen 254 LISKFPGETESNLRKAFAEALKFQV------------PSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKV 321 (693)
T ss_pred HHHhcccchHHHHHHHHHHHhccCC------------CeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcE
Confidence 21 12334544444333221 12999999999975 22456777777654 678
Q ss_pred cEEEEecCCccccccccC-Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q psy17903 169 RFCLICNYVSCIIQPLTS-RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246 (355)
Q Consensus 169 ~~Il~~~~~~~l~~~l~s-r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 246 (355)
+++.++|+++.+.+++++ |+. .+.+.-|+..+..++++..++..+.. ++..+..++..++|.++.-+..+-+.+...
T Consensus 322 ivl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~ 400 (693)
T KOG0730|consen 322 IVLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQ 400 (693)
T ss_pred EEEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHH
Confidence 888889999999999996 544 79999999999999999999887766 678889999999998876665555444433
Q ss_pred CCCCCCHHHHHHHhCCCChHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCHHHHHH
Q psy17903 247 GGEGIVNEDVLEVTGVIPNPWIEKLLKV---------DSFQVLEKYIEDLILEAYSATQLFD 299 (355)
Q Consensus 247 ~~~~It~~~v~~~~~~~~~~~~~~l~~~---------~~~~~~~~~l~~l~~~g~~~~~i~~ 299 (355)
.... +.+++..+...+.+..+.+.+-. +..+..+..+.+.+.++......+.
T Consensus 401 ~~r~-~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~ 461 (693)
T KOG0730|consen 401 ATRR-TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFA 461 (693)
T ss_pred Hhhh-hHHHHHHHHhcCCchhhhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHH
Confidence 2222 78899999988888877766543 5677888888877765444344443
No 168
>KOG0737|consensus
Probab=99.57 E-value=2.5e-14 Score=126.68 Aligned_cols=186 Identities=21% Similarity=0.255 Sum_probs=127.2
Q ss_pred CCCcccccHHHHHHHHHHHh----------cC---C-CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc
Q psy17903 43 TIDDVIEQQEVVSVLKKCLS----------GA---D-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~----------~~---~-~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 108 (355)
+|+++.|-+.+++.++..+- .+ + ..++|+|||||||||.+|++++++.... ++.+..+...
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~-----fInv~~s~lt 164 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGAN-----FINVSVSNLT 164 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCC-----cceeeccccc
Confidence 78999999999999988762 11 1 2239999999999999999999998554 4444444322
Q ss_pred c-----hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHH-------H----HHHHHH----hhhccCCc
Q psy17903 109 G-----IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA-------Q----AALRRT----MEKETKST 168 (355)
Q Consensus 109 ~-----~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~-------~----~~Ll~~----le~~~~~~ 168 (355)
+ ...+...+..++. .-.|+ +|||||+|.+.... . +.+... ..+....+
T Consensus 165 ~KWfgE~eKlv~AvFslAs--------Kl~P~----iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rV 232 (386)
T KOG0737|consen 165 SKWFGEAQKLVKAVFSLAS--------KLQPS----IIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERV 232 (386)
T ss_pred hhhHHHHHHHHHHHHhhhh--------hcCcc----eeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceE
Confidence 2 1222222222222 22233 99999999885321 1 111111 12233346
Q ss_pred cEEEEecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q psy17903 169 RFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246 (355)
Q Consensus 169 ~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 246 (355)
.++.+||++..++.++.+|.. .+++.-|+.++..++++-+++.+.+. +.-.+..++..+.|.-+.-+.++.+.+.+.
T Consensus 233 lVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~~ 310 (386)
T KOG0737|consen 233 LVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAALR 310 (386)
T ss_pred EEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhHh
Confidence 666788899999999888855 89999999999999999999988775 444578889999887776666666655543
No 169
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.56 E-value=7.2e-14 Score=145.43 Aligned_cols=124 Identities=7% Similarity=0.036 Sum_probs=88.5
Q ss_pred EEEEeCCCCCCHHH-----HHHHHHHhhhc-----cCCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHH
Q psy17903 140 IVILDEADSMTHAA-----QAALRRTMEKE-----TKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQ 206 (355)
Q Consensus 140 vliiDe~d~l~~~~-----~~~Ll~~le~~-----~~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~ 206 (355)
||+|||+|.+.... .+.|+..|+.. ..++++|.+||.++.++|||.+.++ .|.++.|+..+..+++.
T Consensus 1735 IIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206 1735 IIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFF 1814 (2281)
T ss_pred EEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHH
Confidence 99999999997532 46677777632 3467888899999999999998554 78898888877777776
Q ss_pred HHHHHcCCCCCHH--HHHHHHHHcCCC-HHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCC
Q psy17903 207 YICEQESVMCDFK--ALETLVETSGGD-MRRAITCLQSCARLK---GGEGIVNEDVLEVTGVI 263 (355)
Q Consensus 207 ~~~~~~~~~~~~~--~~~~l~~~~~g~-~r~~~~~l~~~~~~~---~~~~It~~~v~~~~~~~ 263 (355)
......++.+..+ .++.+++.+.|- .+.+.+.+..++..+ +...|+.+++..++.+.
T Consensus 1815 ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1815 TLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred HHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 5544456665543 477888888663 344444445554444 56789999999887544
No 170
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.8e-13 Score=132.52 Aligned_cols=207 Identities=21% Similarity=0.252 Sum_probs=144.5
Q ss_pred CCCCCcccccHHHHHHHHHHHhc-----------C-CCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCLSG-----------A-DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
..+|+++.|.+.+...+.+.+.. + +.+ .+|||||||||||.+|++++..+ +.+++.++.++.
T Consensus 238 ~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~-----~~~fi~v~~~~l 312 (494)
T COG0464 238 DVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES-----RSRFISVKGSEL 312 (494)
T ss_pred CcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC-----CCeEEEeeCHHH
Confidence 34788999988888888776621 1 223 39999999999999999999976 556777777643
Q ss_pred cc--h----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhh--hccCCc
Q psy17903 108 RG--I----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTME--KETKST 168 (355)
Q Consensus 108 ~~--~----~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le--~~~~~~ 168 (355)
.+ + ..+++.+...... .++ +||+||+|.+.. ...+.|+..++ +...++
T Consensus 313 ~sk~vGesek~ir~~F~~A~~~---------~p~----iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v 379 (494)
T COG0464 313 LSKWVGESEKNIRELFEKARKL---------APS----IIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGV 379 (494)
T ss_pred hccccchHHHHHHHHHHHHHcC---------CCc----EEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCce
Confidence 22 2 2333333332211 222 999999998843 34566677664 345567
Q ss_pred cEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCC-HHHHHHHHHHHH
Q psy17903 169 RFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVM-CDFKALETLVETSGGD-MRRAITCLQSCA 243 (355)
Q Consensus 169 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~-~r~~~~~l~~~~ 243 (355)
++|.+||.++.+.+++.+ |+. .+.|++|+.++..++++..+...+.. .++-.++.+++.+.|- ...+...++.+.
T Consensus 380 ~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~ 459 (494)
T COG0464 380 LVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAA 459 (494)
T ss_pred EEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 788899999999999998 665 79999999999999999998866654 3455677788776653 334444444444
Q ss_pred Hhh---C-CCCCCHHHHHHHhCCCCh
Q psy17903 244 RLK---G-GEGIVNEDVLEVTGVIPN 265 (355)
Q Consensus 244 ~~~---~-~~~It~~~v~~~~~~~~~ 265 (355)
..+ . ...|+.+++.+++....+
T Consensus 460 ~~~~~~~~~~~~~~~~~~~a~~~~~p 485 (494)
T COG0464 460 LEALREARRREVTLDDFLDALKKIKP 485 (494)
T ss_pred HHHHHHhccCCccHHHHHHHHHhcCC
Confidence 433 2 346899999888876544
No 171
>KOG2227|consensus
Probab=99.56 E-value=6.3e-13 Score=121.07 Aligned_cols=202 Identities=18% Similarity=0.212 Sum_probs=141.6
Q ss_pred CcccccHHHHHHHHHHHhc----CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHH-HH
Q psy17903 45 DDVIEQQEVVSVLKKCLSG----ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV-KT 119 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~----~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i-~~ 119 (355)
+.+.|++..++.++.++.. .....++++|.||+|||.+...+...+.........+++||........+...+ ..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~ 229 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSS 229 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHH
Confidence 4588999988888888754 233349999999999999999999888766666677899998644443333332 22
Q ss_pred HHHhhccCCCC---------CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc---CCccEEEEecCC---ccccccc
Q psy17903 120 FAQQTASGFNQ---------DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET---KSTRFCLICNYV---SCIIQPL 184 (355)
Q Consensus 120 ~~~~~~~~~~~---------~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---~~~~~Il~~~~~---~~l~~~l 184 (355)
+.......... .......--++++||.|+|....+..|+.+++++. ...++|..+|.. +++++.|
T Consensus 230 ~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL 309 (529)
T KOG2227|consen 230 LLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRL 309 (529)
T ss_pred HHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhh
Confidence 21111000000 00000012389999999999888888888888753 455666677754 4677888
Q ss_pred cCCee----eEEecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHc---CCCHHHHHHHHHHHHHhh
Q psy17903 185 TSRCS----KFRFKPLAENTMLTRLQYICEQESVM-CDFKALETLVETS---GGDMRRAITCLQSCARLK 246 (355)
Q Consensus 185 ~sr~~----~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~---~g~~r~~~~~l~~~~~~~ 246 (355)
..++. .+.|+|++.+++.++++..+..+... +-+.+++..++.. .||+|+++..++.+...+
T Consensus 310 ~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 310 NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIA 379 (529)
T ss_pred hhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 87654 79999999999999999998876544 3445788877664 799999999998766554
No 172
>KOG2004|consensus
Probab=99.56 E-value=2.2e-14 Score=136.12 Aligned_cols=186 Identities=18% Similarity=0.270 Sum_probs=131.7
Q ss_pred CcccccHHHHHHHHHHHhcCCCC----e--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH--
Q psy17903 45 DDVIEQQEVVSVLKKCLSGADLP----H--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK-- 116 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~~~~----~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-- 116 (355)
++-.|.+++++++.+++.-+... . ++|+||||+|||++++.+|++++.+++ .++.....+..+|+..
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf-----RfSvGG~tDvAeIkGHRR 485 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF-----RFSVGGMTDVAEIKGHRR 485 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE-----EEeccccccHHhhcccce
Confidence 45678899999999988543322 2 999999999999999999999976554 3333333333333222
Q ss_pred ---------HHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH----HHHHHHHHHhhhcc---------------CCc
Q psy17903 117 ---------VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH----AAQAALRRTMEKET---------------KST 168 (355)
Q Consensus 117 ---------i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~----~~~~~Ll~~le~~~---------------~~~ 168 (355)
+-+...... ....+++|||+|.+.. +-..+|+++|+-.. ..+
T Consensus 486 TYVGAMPGkiIq~LK~v~----------t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 486 TYVGAMPGKIIQCLKKVK----------TENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred eeeccCChHHHHHHHhhC----------CCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 111111110 1334999999999864 33577888875211 247
Q ss_pred cEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHH----------HcCCCCCHHHHHHHHHHc--CCCHHHHH
Q psy17903 169 RFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICE----------QESVMCDFKALETLVETS--GGDMRRAI 236 (355)
Q Consensus 169 ~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~l~~~~--~g~~r~~~ 236 (355)
.||+++|..+.+.++|+.|..+|++..+..+|-..+.++++- .+.++++++++..|++.. ..-+|.+.
T Consensus 556 LFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLq 635 (906)
T KOG2004|consen 556 LFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQ 635 (906)
T ss_pred EEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHH
Confidence 789999999999999999999999999999998888776653 235688999998888654 45677777
Q ss_pred HHHHHHHHh
Q psy17903 237 TCLQSCARL 245 (355)
Q Consensus 237 ~~l~~~~~~ 245 (355)
..++++++.
T Consensus 636 k~iekI~Rk 644 (906)
T KOG2004|consen 636 KQIEKICRK 644 (906)
T ss_pred HHHHHHHHH
Confidence 777766553
No 173
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.56 E-value=2e-13 Score=139.04 Aligned_cols=193 Identities=21% Similarity=0.319 Sum_probs=129.7
Q ss_pred CcccccHHHHHHHHHHHhcC-------CCC-e-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH
Q psy17903 45 DDVIEQQEVVSVLKKCLSGA-------DLP-H-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~-------~~~-~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (355)
+.++||+++++.+.+.+... +.| + ++|+||+|+|||++|+++++.+++.. ..++.++.++......+..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~--~~~~~~d~s~~~~~~~~~~ 586 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE--DAMIRLDMSEYMEKHTVSK 586 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc--cceEEEEchhccccccHHH
Confidence 56889999999998887532 222 2 89999999999999999999997653 2566777665432221111
Q ss_pred HHHHHHHhhccCCCCCC-----CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCCcc
Q psy17903 116 KVKTFAQQTASGFNQDG-----KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYVSC 179 (355)
Q Consensus 116 ~i~~~~~~~~~~~~~~~-----~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~~ 179 (355)
.+.. ..+..+....+ -...++.||++||+|.+.++.++.|++.|+++. .+++||+++|....
T Consensus 587 l~g~--~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~ 664 (821)
T CHL00095 587 LIGS--PPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSK 664 (821)
T ss_pred hcCC--CCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEeCCcchH
Confidence 1100 00000000000 000245799999999999999999999999752 57889999873210
Q ss_pred -------------------------------------ccccccCCe-eeEEecCCCHHHHHHHHHHHHHH-------c--
Q psy17903 180 -------------------------------------IIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQ-------E-- 212 (355)
Q Consensus 180 -------------------------------------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~-- 212 (355)
+.|.+.+|+ .+|.|.|++.+++.+++...+.+ .
T Consensus 665 ~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i 744 (821)
T CHL00095 665 VIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGI 744 (821)
T ss_pred HHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCc
Confidence 225577888 68999999999999998877653 2
Q ss_pred CCCCCHHHHHHHHHHc---CCCHHHHHHHHHH
Q psy17903 213 SVMCDFKALETLVETS---GGDMRRAITCLQS 241 (355)
Q Consensus 213 ~~~~~~~~~~~l~~~~---~g~~r~~~~~l~~ 241 (355)
.+.+++++.++|++.. .-..|-+.+.+++
T Consensus 745 ~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~ 776 (821)
T CHL00095 745 QLEVTERIKTLLIEEGYNPLYGARPLRRAIMR 776 (821)
T ss_pred EEEECHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 2567999999999863 2234555555544
No 174
>KOG1514|consensus
Probab=99.56 E-value=4.4e-13 Score=127.44 Aligned_cols=224 Identities=20% Similarity=0.218 Sum_probs=156.9
Q ss_pred ccccHHHHHHHHHHHhcCCC-----CeEEEECCCCCCHHHHHHHHHHHhc-----CCccccceeeecCCCccchHHHHHH
Q psy17903 47 VIEQQEVVSVLKKCLSGADL-----PHFLFYGPPGTGKTSTMIAACHQLF-----GDMYRERILELNASDDRGIQVIRDK 116 (355)
Q Consensus 47 ~vg~~~~~~~l~~~l~~~~~-----~~~ll~Gp~G~GKt~la~~l~~~l~-----~~~~~~~~~~~~~~~~~~~~~i~~~ 116 (355)
+-+++.....|..+++..-. ..++|+|-||+|||.++..+.+.+. ++...+.++++|+....+...+.+.
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~ 477 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEK 477 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHH
Confidence 34555555566665543222 2399999999999999999999876 3566788999999887777766655
Q ss_pred HHHHHHhh-----------ccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc---CCccEEEEecCC---cc
Q psy17903 117 VKTFAQQT-----------ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET---KSTRFCLICNYV---SC 179 (355)
Q Consensus 117 i~~~~~~~-----------~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---~~~~~Il~~~~~---~~ 179 (355)
+-+..... ...+. ..+++....||+|||.|.|....|..|.++++++. ...++|.++|.. .+
T Consensus 478 I~~~lsg~~~~~~~al~~L~~~f~-~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~IaNTmdlPEr 556 (767)
T KOG1514|consen 478 IWEALSGERVTWDAALEALNFRFT-VPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAIANTMDLPER 556 (767)
T ss_pred HHHhcccCcccHHHHHHHHHHhhc-cCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEecccccCHHH
Confidence 44321100 00011 12233355699999999999989999999999864 345566666643 33
Q ss_pred -ccccccCCee--eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHHhhCC-----
Q psy17903 180 -IIQPLTSRCS--KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETS---GGDMRRAITCLQSCARLKGG----- 248 (355)
Q Consensus 180 -l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~~~~~~----- 248 (355)
+...+-||.. .+.|.|++.+|+.+++..+++.. ..++.++++.+++.. .||.|++++.+++++..+..
T Consensus 557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~ 635 (767)
T KOG1514|consen 557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVKG 635 (767)
T ss_pred HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccc
Confidence 3345666654 89999999999999999888655 457788888877653 79999999999999887732
Q ss_pred -----CCCCHHHHHHHhCCCChHHHHHHH
Q psy17903 249 -----EGIVNEDVLEVTGVIPNPWIEKLL 272 (355)
Q Consensus 249 -----~~It~~~v~~~~~~~~~~~~~~l~ 272 (355)
..++.-+|.+++..+..+.....+
T Consensus 636 k~~~~q~v~~~~v~~Ai~em~~~~~~~~i 664 (767)
T KOG1514|consen 636 KLAVSQLVGILHVMEAINEMLASPYIKAL 664 (767)
T ss_pred cccccceeehHHHHHHHHHHhhhhHHHHh
Confidence 335777777777666555444444
No 175
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.56 E-value=2.2e-13 Score=136.64 Aligned_cols=210 Identities=17% Similarity=0.185 Sum_probs=136.5
Q ss_pred CCCCcccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHH
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 119 (355)
..|++++|++..+..+.+.++.. ...+++|+|++|||||++|++++...... ..+++.+||..... ..+...+..
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~--~~~~v~i~c~~~~~-~~~~~~lfg 449 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN--NRRMVKMNCAAMPA-GLLESDLFG 449 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC--CCCeEEEecccCCh-hHhhhhhcC
Confidence 36889999998888877666532 22249999999999999999999876432 34788888876421 211111111
Q ss_pred HHHhhccCCC--CCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCCc-------
Q psy17903 120 FAQQTASGFN--QDG-KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYVS------- 178 (355)
Q Consensus 120 ~~~~~~~~~~--~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~------- 178 (355)
.......+.. ..+ ...+++++|||||++.++.+.|..|++.+++.. .++++|++++..-
T Consensus 450 ~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~ 529 (686)
T PRK15429 450 HERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADR 529 (686)
T ss_pred cccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcC
Confidence 0000000000 000 001245699999999999999999999997642 3568888886531
Q ss_pred cccccccCCee--eEEecCCCH--HHHHHHHHHHH----HHcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhh
Q psy17903 179 CIIQPLTSRCS--KFRFKPLAE--NTMLTRLQYIC----EQESV---MCDFKALETLVET-SGGDMRRAITCLQSCARLK 246 (355)
Q Consensus 179 ~l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~----~~~~~---~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~ 246 (355)
.+.+.+-.|.. .|.++|+.+ +++..+++..+ .+.+. .+++++++.|..+ ++||+|++.+.++.++..+
T Consensus 530 ~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 530 EFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELENVIERAVLLT 609 (686)
T ss_pred cccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHHHHHHHHHhC
Confidence 12233433433 567777764 56655555443 33332 4789999998876 5999999999999998877
Q ss_pred CCCCCCHH
Q psy17903 247 GGEGIVNE 254 (355)
Q Consensus 247 ~~~~It~~ 254 (355)
.+..|+.+
T Consensus 610 ~~~~i~~~ 617 (686)
T PRK15429 610 RGNVLQLS 617 (686)
T ss_pred CCCccccc
Confidence 66666653
No 176
>KOG0726|consensus
Probab=99.55 E-value=2.9e-14 Score=122.10 Aligned_cols=211 Identities=21% Similarity=0.266 Sum_probs=138.9
Q ss_pred CCCCccccccCCCCCCcccccHHHHHHHHHHHhc-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccc
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------A-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR 96 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~ 96 (355)
.-..+-.+|-...++.++-|.+..++.|+..++- | .+|. +++||+||+|||.+|+++++.....
T Consensus 170 mv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSAT--- 246 (440)
T KOG0726|consen 170 MVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSAT--- 246 (440)
T ss_pred cceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchh---
Confidence 3345556775556899999999999999998842 2 2233 9999999999999999999986332
Q ss_pred cceeeecCCC------ccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHH
Q psy17903 97 ERILELNASD------DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRR 159 (355)
Q Consensus 97 ~~~~~~~~~~------~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~ 159 (355)
|+.+-+++ -.+...+++.+.-.....+ .|+||||+|.+.. +.|..++.
T Consensus 247 --FlRvvGseLiQkylGdGpklvRqlF~vA~e~ap-------------SIvFiDEIdAiGtKRyds~SggerEiQrtmLE 311 (440)
T KOG0726|consen 247 --FLRVVGSELIQKYLGDGPKLVRELFRVAEEHAP-------------SIVFIDEIDAIGTKRYDSNSGGEREIQRTMLE 311 (440)
T ss_pred --hhhhhhHHHHHHHhccchHHHHHHHHHHHhcCC-------------ceEEeehhhhhccccccCCCccHHHHHHHHHH
Confidence 22322222 1223344444433322221 2999999998842 34556666
Q ss_pred Hhhh-----ccCCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHH----H
Q psy17903 160 TMEK-----ETKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLV----E 226 (355)
Q Consensus 160 ~le~-----~~~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~----~ 226 (355)
+|.. ....+.+|++||....+.|+|.+.++ .|.|+.|++..-..++.-+..+ ..+.++ .++.++ .
T Consensus 312 LLNQldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~--Mtl~~dVnle~li~~kdd 389 (440)
T KOG0726|consen 312 LLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSR--MTLAEDVNLEELIMTKDD 389 (440)
T ss_pred HHHhccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecc--cchhccccHHHHhhcccc
Confidence 6653 24568899999999999999998877 6999999998877776644332 222222 133333 2
Q ss_pred HcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHh
Q psy17903 227 TSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260 (355)
Q Consensus 227 ~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~ 260 (355)
.++.|+..+..+.-.++.....-.++.+|+..+.
T Consensus 390 lSGAdIkAictEaGllAlRerRm~vt~~DF~ka~ 423 (440)
T KOG0726|consen 390 LSGADIKAICTEAGLLALRERRMKVTMEDFKKAK 423 (440)
T ss_pred cccccHHHHHHHHhHHHHHHHHhhccHHHHHHHH
Confidence 3566777666665555554445567888877654
No 177
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.55 E-value=4.6e-13 Score=128.23 Aligned_cols=212 Identities=17% Similarity=0.178 Sum_probs=138.6
Q ss_pred CCCcccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHH
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 120 (355)
.+..++|....+..+.+.+... ...+++|+|++|+||+++|+.++...... ..+++.++|..... ..+...+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~v~v~c~~~~~-~~~~~~lfg~ 213 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRK--DKRFVAINCAAIPE-NLLESELFGY 213 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcC--CCCeEEEECCCCCh-HHHHHHhcCC
Confidence 4567888888887777776532 22349999999999999999999875432 34688899876422 2222111111
Q ss_pred HHhhccCC--CCCCC-CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------cc
Q psy17903 121 AQQTASGF--NQDGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SC 179 (355)
Q Consensus 121 ~~~~~~~~--~~~~~-~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~ 179 (355)
......+. ...|. ..+++++|||||++.|+...|..|++++++.. .++++|++++.. ..
T Consensus 214 ~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 293 (445)
T TIGR02915 214 EKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGT 293 (445)
T ss_pred CCCCcCCCccCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCC
Confidence 10000000 00010 11356699999999999999999999998642 256888888754 22
Q ss_pred ccccccCCee--eEEecCCCH--HHHHHHHHHHH----HHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhC
Q psy17903 180 IIQPLTSRCS--KFRFKPLAE--NTMLTRLQYIC----EQES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKG 247 (355)
Q Consensus 180 l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~----~~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~ 247 (355)
+.+.|..|.. .|.++|+.+ +++..++...+ ...+ ..+++++++.|..+. +||+|++.+.++.++..+.
T Consensus 294 ~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~~~~~ 373 (445)
T TIGR02915 294 FREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKVKRAVIMAE 373 (445)
T ss_pred ccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 3344444444 556666653 44444444333 3323 468999999998765 9999999999999998877
Q ss_pred CCCCCHHHHH
Q psy17903 248 GEGIVNEDVL 257 (355)
Q Consensus 248 ~~~It~~~v~ 257 (355)
+..|+.+++.
T Consensus 374 ~~~i~~~~l~ 383 (445)
T TIGR02915 374 GNQITAEDLG 383 (445)
T ss_pred CCcccHHHcC
Confidence 7788888763
No 178
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.55 E-value=6.6e-13 Score=128.02 Aligned_cols=213 Identities=16% Similarity=0.177 Sum_probs=141.7
Q ss_pred CCCcccccHHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHH
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~~--~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 120 (355)
.+.+++|....+..+.+.+.... ..+++|+|++|+||+++|+++++..... ..+++.+||... ..+.+...+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~--~~~~i~i~c~~~-~~~~~~~~lfg~ 212 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA--KAPFIALNMAAI-PKDLIESELFGH 212 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCC--CCCeEeeeCCCC-CHHHHHHHhcCC
Confidence 45678998888777766664322 2239999999999999999999875432 457889999764 222222222111
Q ss_pred HHhhccCCC--CCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------cc
Q psy17903 121 AQQTASGFN--QDG-KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SC 179 (355)
Q Consensus 121 ~~~~~~~~~--~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~ 179 (355)
......+.. ..| ...+..+.+||||++.|+...|..|++++++.. .++++|++++.. ..
T Consensus 213 ~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~ 292 (469)
T PRK10923 213 EKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGK 292 (469)
T ss_pred CCCCCCCCCcCCCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCC
Confidence 110000000 000 011345689999999999999999999998642 245888888643 23
Q ss_pred ccccccCCee--eEEecCCCH--HHHHHHHHHHHH----HcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhhC
Q psy17903 180 IIQPLTSRCS--KFRFKPLAE--NTMLTRLQYICE----QESV---MCDFKALETLVET-SGGDMRRAITCLQSCARLKG 247 (355)
Q Consensus 180 l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~~----~~~~---~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~~ 247 (355)
+.+.+..|+. .|.++|+.+ +++..++...+. +.+. .+++++++.|..+ ++||+|++.|.++.++..+.
T Consensus 293 ~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~~ 372 (469)
T PRK10923 293 FREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAA 372 (469)
T ss_pred chHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCC
Confidence 4455666654 566666654 555555554443 3332 4799999999876 49999999999999998877
Q ss_pred CCCCCHHHHHH
Q psy17903 248 GEGIVNEDVLE 258 (355)
Q Consensus 248 ~~~It~~~v~~ 258 (355)
+..|+.+++..
T Consensus 373 ~~~i~~~~l~~ 383 (469)
T PRK10923 373 GQEVLIQDLPG 383 (469)
T ss_pred CCcccHHHCcH
Confidence 77899888753
No 179
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.55 E-value=2.4e-13 Score=138.82 Aligned_cols=196 Identities=19% Similarity=0.295 Sum_probs=135.5
Q ss_pred CcccccHHHHHHHHHHHhcCC--------CCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH
Q psy17903 45 DDVIEQQEVVSVLKKCLSGAD--------LPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~~--------~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (355)
+.++||+.+++.+.+.+.... +.+ ++|+||+|+|||++|+++++.+.+.. ..++.++++..........
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~--~~~i~~d~s~~~~~~~~~~ 642 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDE--DAMVRIDMSEYMEKHSVAR 642 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhhcccchHHH
Confidence 468999999999998886421 223 99999999999999999999987643 3567777765432221111
Q ss_pred HHHHHHHhhccCCCCCCC-----CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCCcc
Q psy17903 116 KVKTFAQQTASGFNQDGK-----PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYVSC 179 (355)
Q Consensus 116 ~i~~~~~~~~~~~~~~~~-----~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~~ 179 (355)
.+.. ..+..+....+. ...++.||++||++.+.++.++.|+.+|+++. .++++|++||....
T Consensus 643 l~g~--~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~ 720 (852)
T TIGR03346 643 LIGA--PPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQ 720 (852)
T ss_pred hcCC--CCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchH
Confidence 1100 000000000000 00134599999999999999999999998763 46779999885211
Q ss_pred -------------------------ccccccCCee-eEEecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHH
Q psy17903 180 -------------------------IIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQ-------E--SVMCDFKALETL 224 (355)
Q Consensus 180 -------------------------l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-------~--~~~~~~~~~~~l 224 (355)
+.|.+..|+. ++.|.|++.+++.+++...... . .+.+++++++.|
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L 800 (852)
T TIGR03346 721 FIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLELSDAALDFL 800 (852)
T ss_pred hHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecCCHHHHHHH
Confidence 2355667774 8899999999998887766542 2 256899999999
Q ss_pred HHH-c--CCCHHHHHHHHHHHHH
Q psy17903 225 VET-S--GGDMRRAITCLQSCAR 244 (355)
Q Consensus 225 ~~~-~--~g~~r~~~~~l~~~~~ 244 (355)
++. + .++.|.+.+.+++...
T Consensus 801 ~~~~~~~~~gaR~L~~~i~~~i~ 823 (852)
T TIGR03346 801 AEAGYDPVYGARPLKRAIQREIE 823 (852)
T ss_pred HHhCCCCCCCchhHHHHHHHHHH
Confidence 987 3 6899999998887553
No 180
>KOG0736|consensus
Probab=99.55 E-value=9.7e-14 Score=132.76 Aligned_cols=170 Identities=19% Similarity=0.250 Sum_probs=116.0
Q ss_pred CCCCcccccHHHHHHHHHHHhc----------C-C-CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc--
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSG----------A-D-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD-- 107 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~----------~-~-~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-- 107 (355)
.+|+|+.|-++++..|.+.|.- | + ...+|||||||||||.+|+++|.++ +.+|+.+.+++.
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc-----sL~FlSVKGPELLN 743 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC-----SLNFLSVKGPELLN 743 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc-----eeeEEeecCHHHHH
Confidence 4899999999999999887742 2 2 1239999999999999999999998 566777666552
Q ss_pred ----cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH-------------HHHHHHHHhhh----ccC
Q psy17903 108 ----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-------------AQAALRRTMEK----ETK 166 (355)
Q Consensus 108 ----~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~-------------~~~~Ll~~le~----~~~ 166 (355)
.+...+|+.++.... ..|| |||+||+|.+.+. ....|+.-|+. ...
T Consensus 744 MYVGqSE~NVR~VFerAR~---------A~PC----VIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~ 810 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARS---------AAPC----VIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQ 810 (953)
T ss_pred HHhcchHHHHHHHHHHhhc---------cCCe----EEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCC
Confidence 122455555554432 3455 9999999999652 23455555543 334
Q ss_pred CccEEEEecCCccccccccCCee---eEEecCCCHHHH-HHHHHHHHHHcCCCCCHH-HHHHHHHHcCCC
Q psy17903 167 STRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTM-LTRLQYICEQESVMCDFK-ALETLVETSGGD 231 (355)
Q Consensus 167 ~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~-~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g~ 231 (355)
.+.+|.+||+++-++|+|.+.++ .+.+.+...++- ..+|+...++ +.++++ .+..+++.|+-+
T Consensus 811 ~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp~~ 878 (953)
T KOG0736|consen 811 DVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCPPN 878 (953)
T ss_pred ceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCCcC
Confidence 56667788999999999998877 566776665544 4444444433 444443 366677776543
No 181
>KOG0739|consensus
Probab=99.54 E-value=5.5e-14 Score=120.82 Aligned_cols=172 Identities=19% Similarity=0.270 Sum_probs=116.8
Q ss_pred CCCcccccHHHHHHHHHHH----------hcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc-
Q psy17903 43 TIDDVIEQQEVVSVLKKCL----------SGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG- 109 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l----------~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~- 109 (355)
.|+++.|.+.+++.|++.+ .+++.|- +|+|||||+||+.+|++++.+.+ ..|+.++.++..+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-----STFFSvSSSDLvSK 205 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-----STFFSVSSSDLVSK 205 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-----CceEEeehHHHHHH
Confidence 7999999999999999875 3445444 99999999999999999999973 3566677665321
Q ss_pred ----hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH-------H----HHHHHHHhhh---ccCCccEE
Q psy17903 110 ----IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-------A----QAALRRTMEK---ETKSTRFC 171 (355)
Q Consensus 110 ----~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~-------~----~~~Ll~~le~---~~~~~~~I 171 (355)
.+.+...+.+++... +| .||||||+|.+... + ...|+--|+- ....+.++
T Consensus 206 WmGESEkLVknLFemARe~--------kP----SIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVL 273 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMAREN--------KP----SIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVL 273 (439)
T ss_pred HhccHHHHHHHHHHHHHhc--------CC----cEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEE
Confidence 122222233333321 12 29999999988541 1 1223333332 23446667
Q ss_pred EEecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC
Q psy17903 172 LICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGD 231 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~ 231 (355)
.+||-+..+..+|++|+. .|.++-|........++-.+-.....+++.....|++.+.|.
T Consensus 274 gATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 274 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred ecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCC
Confidence 788889999999999998 677766666555555554444444567888899999988764
No 182
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.54 E-value=5.3e-14 Score=111.44 Aligned_cols=108 Identities=26% Similarity=0.310 Sum_probs=80.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEE
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vli 142 (355)
+||+||||+|||++++.+++.+ +.+++++++.... ....+...+....... ...+|+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~------------~~~vl~ 63 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA------------KPCVLF 63 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS------------TSEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----ccccccccccccccccccccccccccccccccccc------------cceeee
Confidence 6899999999999999999998 4567788877643 2233333333322221 024999
Q ss_pred EeCCCCCCHHH-----------HHHHHHHhhhccC---CccEEEEecCCcccccccc-CCee-eEEe
Q psy17903 143 LDEADSMTHAA-----------QAALRRTMEKETK---STRFCLICNYVSCIIQPLT-SRCS-KFRF 193 (355)
Q Consensus 143 iDe~d~l~~~~-----------~~~Ll~~le~~~~---~~~~Il~~~~~~~l~~~l~-sr~~-~i~~ 193 (355)
|||+|.+.... .+.|+..+++... .+++|++||..+.+.+++. +|+. .++|
T Consensus 64 iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 64 IDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEF 130 (132)
T ss_dssp EETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE
T ss_pred eccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEc
Confidence 99999998775 6788888887655 4889999999999999999 8887 4554
No 183
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.54 E-value=2.5e-13 Score=136.73 Aligned_cols=190 Identities=19% Similarity=0.254 Sum_probs=127.2
Q ss_pred CcccccHHHHHHHHHHHhcC--------CCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH
Q psy17903 45 DDVIEQQEVVSVLKKCLSGA--------DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~--------~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (355)
+.++||+++++.+.+.+... ++. +++|+||+|||||.+|+++++.+.. .++.+++++......+..
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~-----~~~~~d~se~~~~~~~~~ 528 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGV-----HLERFDMSEYMEKHTVSR 528 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcC-----CeEEEeCchhhhcccHHH
Confidence 46889999999998887632 122 3999999999999999999999843 456666654322111111
Q ss_pred HHHHHHHhhccCCCCCC-----CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCCc-
Q psy17903 116 KVKTFAQQTASGFNQDG-----KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYVS- 178 (355)
Q Consensus 116 ~i~~~~~~~~~~~~~~~-----~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~- 178 (355)
.+.... +..+....+ -...++.||++||+|.+.++.++.|+++|+++. .+++||+++|...
T Consensus 529 lig~~~--gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~g~~ 606 (731)
T TIGR02639 529 LIGAPP--GYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNAGAS 606 (731)
T ss_pred HhcCCC--CCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCcchh
Confidence 110000 000000000 000145699999999999999999999998752 3577888886421
Q ss_pred ------------------------cccccccCCee-eEEecCCCHHHHHHHHHHHHHH-------c--CCCCCHHHHHHH
Q psy17903 179 ------------------------CIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQ-------E--SVMCDFKALETL 224 (355)
Q Consensus 179 ------------------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-------~--~~~~~~~~~~~l 224 (355)
.+.|.+..|.. +|.|.+++.+++..++...+.+ . .+.++++++++|
T Consensus 607 ~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~~~L 686 (731)
T TIGR02639 607 EMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAKKYL 686 (731)
T ss_pred hhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHHHHH
Confidence 13566778875 8999999999999999887753 2 256799999999
Q ss_pred HHHc---CCCHHHHHHHHHH
Q psy17903 225 VETS---GGDMRRAITCLQS 241 (355)
Q Consensus 225 ~~~~---~g~~r~~~~~l~~ 241 (355)
++.. .-..|.+.+.++.
T Consensus 687 a~~~~~~~~GaR~l~r~i~~ 706 (731)
T TIGR02639 687 AEKGYDEEFGARPLARVIQE 706 (731)
T ss_pred HHhCCCcccCchHHHHHHHH
Confidence 9864 2345555555554
No 184
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=1.5e-13 Score=112.71 Aligned_cols=129 Identities=16% Similarity=0.142 Sum_probs=110.3
Q ss_pred CCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCcccccc
Q psy17903 104 ASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183 (355)
Q Consensus 104 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 183 (355)
..+..+++.+++.+......+. .++ +||+++|.|+..++|+|+++||+|+.+++||++|+++.++.++
T Consensus 33 ~~~~i~Vd~iReii~~~~~~~~-----------~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpT 100 (206)
T PRK08485 33 IKEEFKIEDAKEVIAEAYIAES-----------EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPT 100 (206)
T ss_pred CCCCCCHHHHHHHHHHHhhCCC-----------CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchH
Confidence 3446889999998887654431 223 4678999999999999999999999999999999999999999
Q ss_pred ccCCeee-------------EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Q psy17903 184 LTSRCSK-------------FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL 245 (355)
Q Consensus 184 l~sr~~~-------------i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~ 245 (355)
++|||.. +.|.+++.+++.+++.. ..++++...+++++.++..+.|.+|.++...+....+
T Consensus 101 I~SRc~~~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l~~ 174 (206)
T PRK08485 101 IRSRLIIEKRKQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEELEY 174 (206)
T ss_pred HHhhheeccccccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence 9999985 77999999999999998 6778888888999999999999999998777655443
No 185
>KOG0742|consensus
Probab=99.53 E-value=4.3e-13 Score=119.97 Aligned_cols=151 Identities=20% Similarity=0.237 Sum_probs=108.9
Q ss_pred CCcccccHHHHHHHHHHHh--------cCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc-----ch
Q psy17903 44 IDDVIEQQEVVSVLKKCLS--------GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR-----GI 110 (355)
Q Consensus 44 ~~~~vg~~~~~~~l~~~l~--------~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-----~~ 110 (355)
|+++|-++....+|.++.. ++.+.+++||||||+|||.+|+.+++..+- ++....+.+.. .+
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGl-----DYA~mTGGDVAPlG~qaV 428 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGL-----DYAIMTGGDVAPLGAQAV 428 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCC-----ceehhcCCCccccchHHH
Confidence 8999999988888877652 233445999999999999999999998632 33333333322 22
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC---------H---HHHHHHHHHhhhccCCccEEEEecCCc
Q psy17903 111 QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT---------H---AAQAALRRTMEKETKSTRFCLICNYVS 178 (355)
Q Consensus 111 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---------~---~~~~~Ll~~le~~~~~~~~Il~~~~~~ 178 (355)
..|.+.+.. +..+. .+-++||||+|.+. . .+.|+|+-.-.+.+...++++++|.+.
T Consensus 429 TkiH~lFDW-akkS~-----------rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpg 496 (630)
T KOG0742|consen 429 TKIHKLFDW-AKKSR-----------RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPG 496 (630)
T ss_pred HHHHHHHHH-Hhhcc-----------cceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCcc
Confidence 334443333 32221 23489999999762 2 234555555556677899999999999
Q ss_pred cccccccCCee-eEEecCCCHHHHHHHHHHHHHH
Q psy17903 179 CIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQ 211 (355)
Q Consensus 179 ~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~ 211 (355)
.++.++..|.. .|+|+-|..++...+|..++.+
T Consensus 497 dlDsAV~DRide~veFpLPGeEERfkll~lYlnk 530 (630)
T KOG0742|consen 497 DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNK 530 (630)
T ss_pred chhHHHHhhhhheeecCCCChHHHHHHHHHHHHH
Confidence 99999999987 8999999999999998888764
No 186
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.53 E-value=6.3e-13 Score=135.27 Aligned_cols=193 Identities=21% Similarity=0.322 Sum_probs=130.0
Q ss_pred CCcccccHHHHHHHHHHHhcC-------CCC--eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHH
Q psy17903 44 IDDVIEQQEVVSVLKKCLSGA-------DLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIR 114 (355)
Q Consensus 44 ~~~~vg~~~~~~~l~~~l~~~-------~~~--~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 114 (355)
.+.++||+.++..+...+... +.| .++|+||+|+|||++|+++++.+.+.. ..++.++++.........
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~--~~~i~id~se~~~~~~~~ 644 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSD--DAMVRIDMSEFMEKHSVS 644 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCC--CcEEEEEhHHhhhhhhHH
Confidence 457899999999998887632 112 399999999999999999999986543 246677776532211111
Q ss_pred HHHHHHHHhhcc--CCCCCC-----CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecC
Q psy17903 115 DKVKTFAQQTAS--GFNQDG-----KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNY 176 (355)
Q Consensus 115 ~~i~~~~~~~~~--~~~~~~-----~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~ 176 (355)
..+. .+.. +....+ -...++.+|+|||++.+.++.++.|+.+++++. .+++||+++|.
T Consensus 645 ~LiG----~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 645 RLVG----APPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred HHhC----CCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCc
Confidence 1110 0000 000000 000134599999999999999999999998752 35668888885
Q ss_pred C-------------------------ccccccccCCe-eeEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHH
Q psy17903 177 V-------------------------SCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQ-------ES--VMCDFKAL 221 (355)
Q Consensus 177 ~-------------------------~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~~ 221 (355)
. ..+.|.+.+|+ .++.|.|++.+++..++...+.. .+ +.++++++
T Consensus 721 g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~is~~al 800 (857)
T PRK10865 721 GSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDEAL 800 (857)
T ss_pred chHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCcCCHHHH
Confidence 2 11346788888 58999999999999988776654 13 45799999
Q ss_pred HHHHHHcC---CCHHHHHHHHHHH
Q psy17903 222 ETLVETSG---GDMRRAITCLQSC 242 (355)
Q Consensus 222 ~~l~~~~~---g~~r~~~~~l~~~ 242 (355)
+.|++..- -..|-+.+.++..
T Consensus 801 ~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 801 KLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HHHHHcCCCccCChHHHHHHHHHH
Confidence 99998642 2456666666544
No 187
>KOG0729|consensus
Probab=99.53 E-value=1.9e-13 Score=115.88 Aligned_cols=208 Identities=21% Similarity=0.261 Sum_probs=133.0
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhc-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccce
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------A-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERI 99 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~ 99 (355)
.+-+|...-.++.++-|-++.++.|++.++- | .+|. +|+|||||+|||.+|+++++.. +..|
T Consensus 165 mm~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacf 239 (435)
T KOG0729|consen 165 MMQVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACF 239 (435)
T ss_pred EEEeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceE
Confidence 3444543445899999999999999887742 2 2333 9999999999999999999886 3345
Q ss_pred eeecCCCc------cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhh
Q psy17903 100 LELNASDD------RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTME 162 (355)
Q Consensus 100 ~~~~~~~~------~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le 162 (355)
+.+-+++. .+...+++.+. ++. ..+.| +||+||+|.+.. +.|...++++.
T Consensus 240 irvigselvqkyvgegarmvrelf~-mar--------tkkac----iiffdeidaiggarfddg~ggdnevqrtmleli~ 306 (435)
T KOG0729|consen 240 IRVIGSELVQKYVGEGARMVRELFE-MAR--------TKKAC----IIFFDEIDAIGGARFDDGAGGDNEVQRTMLELIN 306 (435)
T ss_pred EeehhHHHHHHHhhhhHHHHHHHHH-Hhc--------ccceE----EEEeeccccccCccccCCCCCcHHHHHHHHHHHH
Confidence 55444431 11122222222 111 12333 999999998843 34555666654
Q ss_pred -----hccCCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCC--
Q psy17903 163 -----KETKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKA-LETLVETSGGD-- 231 (355)
Q Consensus 163 -----~~~~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~g~-- 231 (355)
++..+..++++||.++.+.|+|.+.++ .++|.-|+.+-...+++-+++... ++.+. .+.|++.|+.+
T Consensus 307 qldgfdprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksms--verdir~ellarlcpnstg 384 (435)
T KOG0729|consen 307 QLDGFDPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMS--VERDIRFELLARLCPNSTG 384 (435)
T ss_pred hccCCCCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccc--cccchhHHHHHhhCCCCcc
Confidence 356788899999999999999988876 799999999888888776665433 33322 45566666544
Q ss_pred --HHHHHHHHHHHHHhhCCCCCCHHHHHHHh
Q psy17903 232 --MRRAITCLQSCARLKGGEGIVNEDVLEVT 260 (355)
Q Consensus 232 --~r~~~~~l~~~~~~~~~~~It~~~v~~~~ 260 (355)
+|..-.+.-..+.-+..+..|+.++.+++
T Consensus 385 aeirsvcteagmfairarrk~atekdfl~av 415 (435)
T KOG0729|consen 385 AEIRSVCTEAGMFAIRARRKVATEKDFLDAV 415 (435)
T ss_pred hHHHHHHHHhhHHHHHHHhhhhhHHHHHHHH
Confidence 33333332222222234456666666554
No 188
>PRK15115 response regulator GlrR; Provisional
Probab=99.52 E-value=1.5e-12 Score=124.63 Aligned_cols=212 Identities=17% Similarity=0.200 Sum_probs=132.5
Q ss_pred cccccHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHh
Q psy17903 46 DVIEQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ 123 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 123 (355)
.++|....+..+.+.+.. ....+++|+|++|+||+++|+.+++..... ..+++.++|.... ...+...+......
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~--~~~f~~i~c~~~~-~~~~~~~lfg~~~~ 211 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRA--SKPFIAINCGALP-EQLLESELFGHARG 211 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCC--CCCeEEEeCCCCC-HHHHHHHhcCCCcC
Confidence 467766665555444332 122349999999999999999999876432 3478899987642 22222221111111
Q ss_pred hccCC--CCCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-c------cccc
Q psy17903 124 TASGF--NQDG-KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-S------CIIQ 182 (355)
Q Consensus 124 ~~~~~--~~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-~------~l~~ 182 (355)
...+. ...| ...++.++|||||++.|+...|..|++++++.. .++++|++++.. . .+.+
T Consensus 212 ~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~ 291 (444)
T PRK15115 212 AFTGAVSNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFRE 291 (444)
T ss_pred CCCCCccCCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccH
Confidence 10000 0001 011345699999999999999999999998643 256788877643 1 1222
Q ss_pred cccCCee--eEEecCCCH--HHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCCCC
Q psy17903 183 PLTSRCS--KFRFKPLAE--NTMLTRLQYICE----QES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGGEG 250 (355)
Q Consensus 183 ~l~sr~~--~i~~~~~~~--~~~~~~l~~~~~----~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~~~~ 250 (355)
.+..|.. .+.++|+.+ +++..++...+. ..+ ..+++++++.|..+. +||+|++.+.++.++..+.+..
T Consensus 292 ~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~~~~~~ 371 (444)
T PRK15115 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPV 371 (444)
T ss_pred HHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCCCc
Confidence 2333322 445555543 445444444333 233 248999999999876 9999999999999888777778
Q ss_pred CCHHHHHHHh
Q psy17903 251 IVNEDVLEVT 260 (355)
Q Consensus 251 It~~~v~~~~ 260 (355)
|+.+++...+
T Consensus 372 i~~~~l~~~~ 381 (444)
T PRK15115 372 ISDALVEQAL 381 (444)
T ss_pred cChhhhhhhh
Confidence 9988876443
No 189
>KOG0652|consensus
Probab=99.51 E-value=3.6e-13 Score=113.85 Aligned_cols=200 Identities=22% Similarity=0.281 Sum_probs=124.4
Q ss_pred CCCCcccccHHHHHHHHHHHh-----------cC-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc-
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLS-----------GA-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD- 107 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~-----------~~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~- 107 (355)
..+.++.|.+..++.|...+- -| ++|. +|+|||||+|||.+|++++.+....+ +.+.++..
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF-----LKLAgPQLV 242 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF-----LKLAGPQLV 242 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH-----HHhcchHHH
Confidence 368899999999999888761 12 2333 99999999999999999998864322 22222110
Q ss_pred -----cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhhh-----ccC
Q psy17903 108 -----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK-----ETK 166 (355)
Q Consensus 108 -----~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~-----~~~ 166 (355)
.+...++..+. ++. ...| .+|||||+|.+.. +.|...+.+|.. ...
T Consensus 243 QMfIGdGAkLVRDAFa-LAK--------EkaP----~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~ 309 (424)
T KOG0652|consen 243 QMFIGDGAKLVRDAFA-LAK--------EKAP----TIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD 309 (424)
T ss_pred hhhhcchHHHHHHHHH-Hhh--------ccCC----eEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc
Confidence 01112222211 111 1122 3999999998842 345555555543 234
Q ss_pred CccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHH---HHH
Q psy17903 167 STRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM-RRAI---TCL 239 (355)
Q Consensus 167 ~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~-r~~~---~~l 239 (355)
.+.+|.+||..+-+.|++.+.++ .|+|+.|+++...++++-+.++.++.- +--.+.|++.+.+-- .++. -+.
T Consensus 310 ~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~-DvNfeELaRsTddFNGAQcKAVcVEA 388 (424)
T KOG0652|consen 310 RVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSD-DVNFEELARSTDDFNGAQCKAVCVEA 388 (424)
T ss_pred ceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCC-CCCHHHHhhcccccCchhheeeehhh
Confidence 57789999999999999987766 799999999999999998877655432 223566666653311 1111 111
Q ss_pred HHHHHhhCCCCCCHHHHHHHh
Q psy17903 240 QSCARLKGGEGIVNEDVLEVT 260 (355)
Q Consensus 240 ~~~~~~~~~~~It~~~v~~~~ 260 (355)
-.++...+...|+-+++.+.+
T Consensus 389 GMiALRr~atev~heDfmegI 409 (424)
T KOG0652|consen 389 GMIALRRGATEVTHEDFMEGI 409 (424)
T ss_pred hHHHHhcccccccHHHHHHHH
Confidence 122222244567777776544
No 190
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.4e-13 Score=128.68 Aligned_cols=201 Identities=21% Similarity=0.248 Sum_probs=140.7
Q ss_pred CCCCCcccccHHHHHHHHHHH---h--------cCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc-
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCL---S--------GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD- 107 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l---~--------~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~- 107 (355)
..+|.++.|.+++++.+.+.+ + ++..|. ++++||||+|||.+|++++.+. +.+++.+++++.
T Consensus 146 ~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA-----~VPFf~iSGS~FV 220 (596)
T COG0465 146 KVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-----GVPFFSISGSDFV 220 (596)
T ss_pred CcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc-----CCCceeccchhhh
Confidence 357999999999998887765 3 234555 9999999999999999999887 556777777763
Q ss_pred -----cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHhhhcc--C
Q psy17903 108 -----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTMEKET--K 166 (355)
Q Consensus 108 -----~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~~--~ 166 (355)
.+...+|+.+.+..... || ||||||+|.... +..+.|+--|+-.. .
T Consensus 221 emfVGvGAsRVRdLF~qAkk~a---------P~----IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~ 287 (596)
T COG0465 221 EMFVGVGASRVRDLFEQAKKNA---------PC----IIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE 287 (596)
T ss_pred hhhcCCCcHHHHHHHHHhhccC---------CC----eEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC
Confidence 23345666666554432 23 999999998843 23456666666444 4
Q ss_pred CccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH-HHHHHHHHH
Q psy17903 167 STRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR-RAITCLQSC 242 (355)
Q Consensus 167 ~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r-~~~~~l~~~ 242 (355)
.++++.+||.++-++++|.+.++ .|.+..|+.....++++-+++..... ..-.+..+++.++|-.. .+.|.+..+
T Consensus 288 gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEA 366 (596)
T COG0465 288 GVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEA 366 (596)
T ss_pred ceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHH
Confidence 56777788899999999987765 78899999999999999666554433 12234448888766443 344455444
Q ss_pred HHhh---CCCCCCHHHHHHHh
Q psy17903 243 ARLK---GGEGIVNEDVLEVT 260 (355)
Q Consensus 243 ~~~~---~~~~It~~~v~~~~ 260 (355)
+.++ ....|+..++.++.
T Consensus 367 al~aar~n~~~i~~~~i~ea~ 387 (596)
T COG0465 367 ALLAARRNKKEITMRDIEEAI 387 (596)
T ss_pred HHHHHHhcCeeEeccchHHHH
Confidence 4444 45678877777655
No 191
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.50 E-value=2.1e-12 Score=117.32 Aligned_cols=226 Identities=15% Similarity=0.191 Sum_probs=137.5
Q ss_pred ccccCCC-CCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCc-ccc-ceeeecCCCc-----
Q psy17903 36 VEKYRPK-TIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-YRE-RILELNASDD----- 107 (355)
Q Consensus 36 ~~k~~p~-~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~-~~~-~~~~~~~~~~----- 107 (355)
.++-+|. .|.+++||++++..|...+.+....+++|.|++|+|||++++.+++.+.... ... ++. .++...
T Consensus 7 ~~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~~ 85 (350)
T CHL00081 7 KKKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMSD 85 (350)
T ss_pred hhccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhch
Confidence 4444554 7999999999999999998887777799999999999999999988875311 000 010 000000
Q ss_pred ---------------------------cchHHHHHHH--HHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHH
Q psy17903 108 ---------------------------RGIQVIRDKV--KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALR 158 (355)
Q Consensus 108 ---------------------------~~~~~i~~~i--~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll 158 (355)
...+.+...+ ......+......+--..+++.+|++||++.+++..|..|+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 86 EVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred hhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence 0000000000 00000000000000001145679999999999999999999
Q ss_pred HHhhhcc-----------CCccEEEEe--cCC-ccccccccCCee-eEEecCCCH-HHHHHHHHHHHH------------
Q psy17903 159 RTMEKET-----------KSTRFCLIC--NYV-SCIIQPLTSRCS-KFRFKPLAE-NTMLTRLQYICE------------ 210 (355)
Q Consensus 159 ~~le~~~-----------~~~~~Il~~--~~~-~~l~~~l~sr~~-~i~~~~~~~-~~~~~~l~~~~~------------ 210 (355)
+.|++.. ....|++++ |.. ..+.+++..|+. .+.+..++. ++..+++++...
T Consensus 166 eam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~ 245 (350)
T CHL00081 166 DSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKY 245 (350)
T ss_pred HHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhh
Confidence 9997632 122344433 322 247788888876 677777763 555455544211
Q ss_pred -----------------HcCCCCCHHHHHHHHHHc---C-CCHHHHHHHHHHH---HHhhCCCCCCHHHHHHHhCC
Q psy17903 211 -----------------QESVMCDFKALETLVETS---G-GDMRRAITCLQSC---ARLKGGEGIVNEDVLEVTGV 262 (355)
Q Consensus 211 -----------------~~~~~~~~~~~~~l~~~~---~-g~~r~~~~~l~~~---~~~~~~~~It~~~v~~~~~~ 262 (355)
-..+.++++.++++++.+ + -++|..+..++.+ +.+.+...++.+||..++..
T Consensus 246 ~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~ 321 (350)
T CHL00081 246 EESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITL 321 (350)
T ss_pred ccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 124678888888877664 2 3577777666544 34447788999999987643
No 192
>KOG1968|consensus
Probab=99.50 E-value=1.8e-13 Score=136.64 Aligned_cols=206 Identities=26% Similarity=0.417 Sum_probs=154.5
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcC------------C--CCe--EEEECCCCCCHHHHHHHHHHHhcCCcc
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA------------D--LPH--FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~------------~--~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~ 95 (355)
...|.++|+|....++.|.......+..|+... . ... ++++||||+|||+.+..++..+
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~----- 381 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKEL----- 381 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhc-----
Confidence 478999999999999999887776777776432 1 111 4999999999999999999998
Q ss_pred ccceeeecCCCccchHHHHHHHHHHHHhhcc-CCC-CCC-CCC--CCcEEEEEeCCCCCCHH---HHHHHHHHhhhccCC
Q psy17903 96 RERILELNASDDRGIQVIRDKVKTFAQQTAS-GFN-QDG-KPC--PPFKIVILDEADSMTHA---AQAALRRTMEKETKS 167 (355)
Q Consensus 96 ~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~-~~~-~~~-~~~--~~~~vliiDe~d~l~~~---~~~~Ll~~le~~~~~ 167 (355)
.+.+++.|+++.++...+.+.+..+...-.. +.. ..+ +.+ ...-||++||+|.+..+ ....+-.+..+ ..
T Consensus 382 g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l~~k--s~ 459 (871)
T KOG1968|consen 382 GFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSLCKK--SS 459 (871)
T ss_pred ccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHHHHh--cc
Confidence 5588999999877666666655543221110 000 000 000 12349999999999873 34555555552 22
Q ss_pred ccEEEEecCCcc-ccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 168 TRFCLICNYVSC-IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 168 ~~~Il~~~~~~~-l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
.-+|++||+... -..++.+.|..++|..|+.+.+...+..+|..+++.++++.++.+++.++||+|++++.|+....
T Consensus 460 ~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~lq~~~~ 537 (871)
T KOG1968|consen 460 RPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQLQFWSL 537 (871)
T ss_pred CCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHHhhhhc
Confidence 346778887654 44577788899999999999999999999999999999999999999999999999999998744
No 193
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.50 E-value=1.9e-12 Score=117.71 Aligned_cols=218 Identities=12% Similarity=0.112 Sum_probs=129.6
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCC------ccc-----cceeeecC--------
Q psy17903 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD------MYR-----ERILELNA-------- 104 (355)
Q Consensus 44 ~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~------~~~-----~~~~~~~~-------- 104 (355)
|..++||++++..|.-.+-.....+++|.|++|+|||+++++++..+... ..+ ......+|
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 78899999999888666655555679999999999999999999887310 000 00000000
Q ss_pred --------------CCccchHHHHHHH--HHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc---
Q psy17903 105 --------------SDDRGIQVIRDKV--KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET--- 165 (355)
Q Consensus 105 --------------~~~~~~~~i~~~i--~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~--- 165 (355)
+.....+.+...+ ......+......+--..+++.+++|||++.+++..|+.|+..|++..
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~~v 162 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWNVV 162 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCeEE
Confidence 0000000010000 000000000000000011355699999999999999999999997642
Q ss_pred ----------CCccEEEEecCC-ccccccccCCee-eEEecCCCH-HHHHHHHHHHHH----------------------
Q psy17903 166 ----------KSTRFCLICNYV-SCIIQPLTSRCS-KFRFKPLAE-NTMLTRLQYICE---------------------- 210 (355)
Q Consensus 166 ----------~~~~~Il~~~~~-~~l~~~l~sr~~-~i~~~~~~~-~~~~~~l~~~~~---------------------- 210 (355)
..+++|.+.|.. ..+.+++..|+. .+.+..+.. ++..++++....
T Consensus 163 ~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~ 242 (337)
T TIGR02030 163 EREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQAK 242 (337)
T ss_pred EECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCHHH
Confidence 122333333322 347778888987 577777765 555555554211
Q ss_pred -------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHHH---hhCCCCCCHHHHHHHhC
Q psy17903 211 -------QESVMCDFKALETLVETS---GG-DMRRAITCLQSCAR---LKGGEGIVNEDVLEVTG 261 (355)
Q Consensus 211 -------~~~~~~~~~~~~~l~~~~---~g-~~r~~~~~l~~~~~---~~~~~~It~~~v~~~~~ 261 (355)
-..+.++++.++++++.+ +. ++|..+..++.+.. +.+...++.+||..++.
T Consensus 243 I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~ 307 (337)
T TIGR02030 243 IVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAV 307 (337)
T ss_pred HHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 134668888888877654 33 46777766655443 34778899999998664
No 194
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.49 E-value=5.1e-12 Score=110.49 Aligned_cols=181 Identities=11% Similarity=0.033 Sum_probs=136.6
Q ss_pred CCccEEEEec--CCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHcCCCHHHHHH
Q psy17903 166 KSTRFCLICN--YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE------SVMCDFKALETLVETSGGDMRRAIT 237 (355)
Q Consensus 166 ~~~~~Il~~~--~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~------~~~~~~~~~~~l~~~~~g~~r~~~~ 237 (355)
..+++|.+|+ ....+.++|+|||+++.|++++.+++..++++.+... .+.+++++++.|+..++||.|.++|
T Consensus 7 G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN 86 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILN 86 (300)
T ss_pred CcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHH
Confidence 4566777665 3456899999999999999999999999999998752 3679999999999999999999999
Q ss_pred HHHHHHHhh-CC--CCCCHHHHHHHhCCC----------ChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy17903 238 CLQSCARLK-GG--EGIVNEDVLEVTGVI----------PNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQF 301 (355)
Q Consensus 238 ~l~~~~~~~-~~--~~It~~~v~~~~~~~----------~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l 301 (355)
.||.+.... +. ..||.+.+.+++... .-+.+..+.+. .|.+.+.-++..|++.|++|..|.+.|
T Consensus 87 ~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRL 166 (300)
T PRK14700 87 LLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRM 166 (300)
T ss_pred HHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHH
Confidence 999966533 22 239999999887532 22345555555 889999999999999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHH
Q psy17903 302 HDIVMSASSLSDKQKALILEKLAECNARLQDGA-SEYIQILDLGSIVI 348 (355)
Q Consensus 302 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~-~~~~~l~~~~~~~~ 348 (355)
........++-+.+...+..-+..+-.. -|. .-++.|...+..++
T Consensus 167 ii~AsEDIGlAdP~al~~a~aa~~A~~~--iG~PEa~i~La~aviyLA 212 (300)
T PRK14700 167 LCIASEDIGNADPQALRVAMDAWNAYEK--LGMPEGRLVLAQAAIYLA 212 (300)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHH--hCChHHHHHHHHHHHHHH
Confidence 9988876555554444333333333333 363 55666666666654
No 195
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.49 E-value=6.9e-12 Score=120.59 Aligned_cols=212 Identities=17% Similarity=0.176 Sum_probs=134.0
Q ss_pred CCcccccHHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHH
Q psy17903 44 IDDVIEQQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA 121 (355)
Q Consensus 44 ~~~~vg~~~~~~~l~~~l~~~~--~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 121 (355)
+..++|....+..+.+.+.... ..+++++|++|+||+++|+.++..... ...+++.++|.... ...+...+....
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~--~~~~~~~i~c~~~~-~~~~~~~lfg~~ 218 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR--AKGPFIKVNCAALP-ESLLESELFGHE 218 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC--CCCCeEEEECCCCC-HHHHHHHhcCCC
Confidence 4467787766666655554322 234999999999999999999886533 23478888987642 222211111100
Q ss_pred HhhccCCC--CCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCCc-------cc
Q psy17903 122 QQTASGFN--QDG-KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYVS-------CI 180 (355)
Q Consensus 122 ~~~~~~~~--~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l 180 (355)
.....+.. ..| ...+++++|||||++.|+...|..|+.++++.. .++++|++++..- .+
T Consensus 219 ~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~~g~~ 298 (457)
T PRK11361 219 KGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTF 298 (457)
T ss_pred CCCCCCCCCCCCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCc
Confidence 00000000 000 011355699999999999999999999997632 3468888887431 23
Q ss_pred cccccCCee--eEEecCCCH--HHHHHHHHHH----HHHcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCC
Q psy17903 181 IQPLTSRCS--KFRFKPLAE--NTMLTRLQYI----CEQES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGG 248 (355)
Q Consensus 181 ~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~----~~~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~~ 248 (355)
.+.+..|.. .+.++|+.+ +++..++... ....+ ..+++++++.|..+. +||+|++.+.++.+...+.+
T Consensus 299 ~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~~~~ 378 (457)
T PRK11361 299 REDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSG 378 (457)
T ss_pred hHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCC
Confidence 333443433 455555553 4444433333 32223 368999999998764 99999999999998887777
Q ss_pred CCCCHHHHHH
Q psy17903 249 EGIVNEDVLE 258 (355)
Q Consensus 249 ~~It~~~v~~ 258 (355)
..|+.+++..
T Consensus 379 ~~i~~~~l~~ 388 (457)
T PRK11361 379 PIIFSEDLPP 388 (457)
T ss_pred CcccHHHChH
Confidence 7898888754
No 196
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=4.6e-13 Score=131.04 Aligned_cols=191 Identities=21% Similarity=0.351 Sum_probs=134.6
Q ss_pred CcccccHHHHHHHHHHHhcC-------CCC--eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH
Q psy17903 45 DDVIEQQEVVSVLKKCLSGA-------DLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~-------~~~--~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (355)
+.++||++++..+.+.++.. +.| .+||.||+|+|||.+|++++..++++. ..++.+|+++......+..
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e--~aliR~DMSEy~EkHsVSr 568 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE--QALIRIDMSEYMEKHSVSR 568 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC--ccceeechHHHHHHHHHHH
Confidence 46899999999999988532 222 299999999999999999999998764 3688888887644443332
Q ss_pred HHHHHHHhhcc--CCCCCC-----CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC
Q psy17903 116 KVKTFAQQTAS--GFNQDG-----KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV 177 (355)
Q Consensus 116 ~i~~~~~~~~~--~~~~~~-----~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~ 177 (355)
.+. .++. ++...| -+..++-||++||++.-.++.++.|+.+|+++. .++++|+|+|--
T Consensus 569 LIG----aPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~G 644 (786)
T COG0542 569 LIG----APPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAG 644 (786)
T ss_pred HhC----CCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEEecccc
Confidence 222 1111 111111 011356799999999999999999999999753 478899998721
Q ss_pred c--------------------c--------ccccccCCee-eEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHH
Q psy17903 178 S--------------------C--------IIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQ-------ES--VMCDFK 219 (355)
Q Consensus 178 ~--------------------~--------l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~ 219 (355)
. . +.|.+..|.. +|.|.+++.+.+.+++...+.. .+ +.++++
T Consensus 645 s~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~ 724 (786)
T COG0542 645 SEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITLELSDE 724 (786)
T ss_pred hHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHH
Confidence 0 0 2355666666 8999999999998887766553 23 467899
Q ss_pred HHHHHHHHcC---CCHHHHHHHHHH
Q psy17903 220 ALETLVETSG---GDMRRAITCLQS 241 (355)
Q Consensus 220 ~~~~l~~~~~---g~~r~~~~~l~~ 241 (355)
+.++|++.+- ...|-+.+.++.
T Consensus 725 a~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 725 AKDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred HHHHHHHhccCCCcCchHHHHHHHH
Confidence 9999998762 334555555543
No 197
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.48 E-value=3.8e-12 Score=118.94 Aligned_cols=210 Identities=14% Similarity=0.147 Sum_probs=125.0
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH--HHHHHH
Q psy17903 45 DDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK--VKTFAQ 122 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~--i~~~~~ 122 (355)
+.++|++++++.+...+..+. |+||+||||+|||++|+++++.+.... .+....+..... .++... +.....
T Consensus 20 ~~i~gre~vI~lll~aalag~--hVLL~GpPGTGKT~LAraLa~~~~~~~---~F~~~~~~fttp-~DLfG~l~i~~~~~ 93 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNAR---AFEYLMTRFSTP-EEVFGPLSIQALKD 93 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC--CEEEECCCChhHHHHHHHHHHHhcccC---cceeeeeeecCc-HHhcCcHHHhhhhh
Confidence 358899999999988887664 799999999999999999999874321 122222211011 111110 111100
Q ss_pred hhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc---------CCccE-EEEecCCc---cccccccCCee
Q psy17903 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET---------KSTRF-CLICNYVS---CIIQPLTSRCS 189 (355)
Q Consensus 123 ~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---------~~~~~-Il~~~~~~---~l~~~l~sr~~ 189 (355)
.+.......|. -....++|+||+..+++..|+.|+..|++.. ...+| ++++|... ...+++..|+.
T Consensus 94 ~g~f~r~~~G~-L~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFl 172 (498)
T PRK13531 94 EGRYQRLTSGY-LPEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRML 172 (498)
T ss_pred cCchhhhcCCc-cccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEE
Confidence 00000001110 0012399999999999999999999996532 12344 44555322 24457888876
Q ss_pred -eEEecCCC-HHHHHHHHHHHHH-----------------------HcCCCCCHHHHHHHHHHc------C----CCHHH
Q psy17903 190 -KFRFKPLA-ENTMLTRLQYICE-----------------------QESVMCDFKALETLVETS------G----GDMRR 234 (355)
Q Consensus 190 -~i~~~~~~-~~~~~~~l~~~~~-----------------------~~~~~~~~~~~~~l~~~~------~----g~~r~ 234 (355)
.+.+++++ .++..+++..... -..+.+++...+++++.. . -++|.
T Consensus 173 iri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~r~~~~~SpR~ 252 (498)
T PRK13531 173 IRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDALPNAPYVSDRR 252 (498)
T ss_pred EEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcCCCCCCcCcHH
Confidence 57788886 3454566543211 024567777777766543 1 24566
Q ss_pred HHHHH---HHHHHhhCCCCCCHHHHHHHhCC
Q psy17903 235 AITCL---QSCARLKGGEGIVNEDVLEVTGV 262 (355)
Q Consensus 235 ~~~~l---~~~~~~~~~~~It~~~v~~~~~~ 262 (355)
.+..+ +..+.+.|...++.+|+. ++..
T Consensus 253 ~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~ 282 (498)
T PRK13531 253 WKKAIRLLQASAFFSGRDAIAPIDLI-LLKD 282 (498)
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHH-HhHH
Confidence 55544 444555578889999998 5443
No 198
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.47 E-value=1.6e-12 Score=114.51 Aligned_cols=206 Identities=19% Similarity=0.167 Sum_probs=136.1
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCC--eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHH
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~~~~--~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 120 (355)
.|+.+++.+..++.+....++-..- .+||.|++|+||..+|++++...... +.+|+.+||+.......-.+.+..
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~--~~pFlalNCA~lPe~~aEsElFG~- 278 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRH--SKPFLALNCASLPEDAAESELFGH- 278 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCccc--CCCeeEeecCCCchhHhHHHHhcC-
Confidence 5899999988887777666543222 29999999999999999998776443 457899999864222211111111
Q ss_pred HHhhccCCCCCCC----CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------c
Q psy17903 121 AQQTASGFNQDGK----PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------S 178 (355)
Q Consensus 121 ~~~~~~~~~~~~~----~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~ 178 (355)
+. . ..++ ..++++.|++||+..|++.-|.+|++++.++. .++++|++|... .
T Consensus 279 ap---g---~~gk~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~~g 352 (511)
T COG3283 279 AP---G---DEGKKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQKG 352 (511)
T ss_pred CC---C---CCCccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHhcC
Confidence 10 0 1111 11566799999999999999999999997643 457788777532 1
Q ss_pred cccccccCCeee--EEecCCCH------HHHHHHHHHHHHHcCC---CCCHHHHHHHHHH-cCCCHHHHHHHHHHHHHhh
Q psy17903 179 CIIQPLTSRCSK--FRFKPLAE------NTMLTRLQYICEQESV---MCDFKALETLVET-SGGDMRRAITCLQSCARLK 246 (355)
Q Consensus 179 ~l~~~l~sr~~~--i~~~~~~~------~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~-~~g~~r~~~~~l~~~~~~~ 246 (355)
++-..+--|..+ ++++|+.+ .-..-++++.+.+.++ .++++.+.++.++ ++||+|++.|.+-+++...
T Consensus 353 ~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 353 KFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred chHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 122222223232 22222221 1224456666666665 4678888888765 6999999999999888888
Q ss_pred CCCCCCHHHHH
Q psy17903 247 GGEGIVNEDVL 257 (355)
Q Consensus 247 ~~~~It~~~v~ 257 (355)
.+..++.+++.
T Consensus 433 Eg~~l~i~~i~ 443 (511)
T COG3283 433 EGYELRIEDIL 443 (511)
T ss_pred ccCccchhhcc
Confidence 77778877775
No 199
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.47 E-value=6.3e-13 Score=124.02 Aligned_cols=189 Identities=20% Similarity=0.226 Sum_probs=113.6
Q ss_pred CC-cccccHHHHHHHHHHHhc-------C---------CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCC
Q psy17903 44 ID-DVIEQQEVVSVLKKCLSG-------A---------DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (355)
Q Consensus 44 ~~-~~vg~~~~~~~l~~~l~~-------~---------~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 106 (355)
++ .++||+.+++.+...+.+ + ...++||+||||||||++|+++++.+. .+++.+++..
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~-----~pf~~id~~~ 143 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILD-----VPFAIADATT 143 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhC-----CCceecchhh
Confidence 44 378999999988665511 1 124599999999999999999999883 3455555543
Q ss_pred ccch----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHhhhcc---
Q psy17903 107 DRGI----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTMEKET--- 165 (355)
Q Consensus 107 ~~~~----~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~~--- 165 (355)
.... ......+........... ..+.+.+|||||+|.++. +.|++|++.||...
T Consensus 144 l~~~gyvG~d~e~~l~~l~~~~~~~~-----~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v 218 (412)
T PRK05342 144 LTEAGYVGEDVENILLKLLQAADYDV-----EKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASV 218 (412)
T ss_pred cccCCcccchHHHHHHHHHHhccccH-----HHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEe
Confidence 2211 111222222111100000 001345999999999975 37899999997421
Q ss_pred ------------------CCccEEEEecCC------------------------------c--------------ccccc
Q psy17903 166 ------------------KSTRFCLICNYV------------------------------S--------------CIIQP 183 (355)
Q Consensus 166 ------------------~~~~~Il~~~~~------------------------------~--------------~l~~~ 183 (355)
.++.||++++.. . -+.|.
T Consensus 219 ~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PE 298 (412)
T PRK05342 219 PPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPE 298 (412)
T ss_pred CCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHH
Confidence 122333222100 0 02455
Q ss_pred ccCCee-eEEecCCCHHHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Q psy17903 184 LTSRCS-KFRFKPLAENTMLTRLQY----I-------CEQESV--MCDFKALETLVETS---GGDMRRAITCLQSC 242 (355)
Q Consensus 184 l~sr~~-~i~~~~~~~~~~~~~l~~----~-------~~~~~~--~~~~~~~~~l~~~~---~g~~r~~~~~l~~~ 242 (355)
+..|.. ++.|.+++.+++..++.. . +...++ .++++++++|++.+ .--.|.+...+++.
T Consensus 299 flgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~ 374 (412)
T PRK05342 299 FIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEI 374 (412)
T ss_pred HhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 666665 789999999999998872 2 233444 57999999999874 22344444444443
No 200
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.46 E-value=1.2e-11 Score=119.09 Aligned_cols=214 Identities=17% Similarity=0.174 Sum_probs=142.3
Q ss_pred CCcccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHH
Q psy17903 44 IDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA 121 (355)
Q Consensus 44 ~~~~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 121 (355)
...++|.......+.+.+... ....+++.|++|+||+++|+++++..... ..+++.+||... ..+.+...+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~--~~~~~~~~c~~~-~~~~~~~~lfg~~ 209 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRA--NGPFIALNMAAI-PKDLIESELFGHE 209 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCC--CCCeEEEeCCCC-CHHHHHHHhcCCC
Confidence 345788777776666555432 22239999999999999999999875433 457888898764 2222222221100
Q ss_pred HhhccCCC--CCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCCc-------cc
Q psy17903 122 QQTASGFN--QDG-KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYVS-------CI 180 (355)
Q Consensus 122 ~~~~~~~~--~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l 180 (355)
.....+.. ..+ ...+++.+|+|||++.|+.+.|..|++++++.. .++++|++++..- .+
T Consensus 210 ~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f 289 (463)
T TIGR01818 210 KGAFTGANTRRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKF 289 (463)
T ss_pred CCCCCCcccCCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCc
Confidence 00000000 000 011345689999999999999999999998642 2467888876431 23
Q ss_pred cccccCCee--eEEecCCC--HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCC
Q psy17903 181 IQPLTSRCS--KFRFKPLA--ENTMLTRLQYICE----QES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGG 248 (355)
Q Consensus 181 ~~~l~sr~~--~i~~~~~~--~~~~~~~l~~~~~----~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~~ 248 (355)
.+.|..|.. .++++|+. .+++..++...+. ..+ ..+++++++.|..+. +||+|++.+.++.++..+.+
T Consensus 290 ~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~~~ 369 (463)
T TIGR01818 290 REDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMASG 369 (463)
T ss_pred HHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhCCC
Confidence 345555544 67778877 5677776665543 223 468999999998764 99999999999999988777
Q ss_pred CCCCHHHHHHHh
Q psy17903 249 EGIVNEDVLEVT 260 (355)
Q Consensus 249 ~~It~~~v~~~~ 260 (355)
..|+.+++...+
T Consensus 370 ~~i~~~~l~~~~ 381 (463)
T TIGR01818 370 DEVLVSDLPAEL 381 (463)
T ss_pred CcccHHhchHHH
Confidence 789988876443
No 201
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.45 E-value=2.1e-12 Score=112.50 Aligned_cols=188 Identities=18% Similarity=0.268 Sum_probs=108.2
Q ss_pred ccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH---------H
Q psy17903 47 VIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK---------V 117 (355)
Q Consensus 47 ~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~---------i 117 (355)
++|++..++.|.+++.++...+++|+||.|+|||++++.+.+.+..... ..+.++............. +
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~--~~~y~~~~~~~~~~~~~~~~~~~~~~~~l 78 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGY--KVVYIDFLEESNESSLRSFIEETSLADEL 78 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EE--CCCHHCCTTBSHHHHHHHHHHHHHHHCHC
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC--cEEEEecccchhhhHHHHHHHHHHHHHHH
Confidence 5799999999999999876677999999999999999999998843222 2222222221111111111 0
Q ss_pred HHHHHhhccCCC------CCCC--------------CCCCcEEEEEeCCCCCC------HHHHHHHHHHhhh--ccCCcc
Q psy17903 118 KTFAQQTASGFN------QDGK--------------PCPPFKIVILDEADSMT------HAAQAALRRTMEK--ETKSTR 169 (355)
Q Consensus 118 ~~~~~~~~~~~~------~~~~--------------~~~~~~vliiDe~d~l~------~~~~~~Ll~~le~--~~~~~~ 169 (355)
............ .... ....+-+|||||++.+. ......|...++. ...++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 158 (234)
T PF01637_consen 79 SEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVS 158 (234)
T ss_dssp HHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEE
T ss_pred HHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCce
Confidence 000100000000 0000 00123599999999998 3445667777765 234455
Q ss_pred EEEEecCCc------cccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Q psy17903 170 FCLICNYVS------CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMC--DFKALETLVETSGGDMRRAIT 237 (355)
Q Consensus 170 ~Il~~~~~~------~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~~~~ 237 (355)
+|+++.... .-..++..|+..+.+++++.++..+++...+... ..+ +++.++.+...++|+|+.+..
T Consensus 159 ~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 159 IVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred EEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 666655421 1234567777889999999999999999988776 554 999999999999999998753
No 202
>KOG2680|consensus
Probab=99.44 E-value=3.5e-12 Score=109.90 Aligned_cols=120 Identities=20% Similarity=0.285 Sum_probs=97.6
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecC------------CccccccccCCeeeEEecCCCHHHHHHHHH
Q psy17903 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY------------VSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206 (355)
Q Consensus 139 ~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~------------~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 206 (355)
.++||||+|.|.-+....|.+.+|+.- .+++|++||. ++-+.-.+..|..++.-.|++.+++..+|+
T Consensus 290 GVLFIDEvHMLDIEcFsFlNrAlE~d~-~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL~ 368 (454)
T KOG2680|consen 290 GVLFIDEVHMLDIECFSFLNRALENDM-APIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKILR 368 (454)
T ss_pred ceEEEeeehhhhhHHHHHHHHHhhhcc-CcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHHH
Confidence 599999999999999999999998643 4567777763 233556688999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhh---CCCCCCHHHHHHH
Q psy17903 207 YICEQESVMCDFKALETLVETS-GGDMRRAITCLQSCARLK---GGEGIVNEDVLEV 259 (355)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~---~~~~It~~~v~~~ 259 (355)
.+|..+.+.+++++++.|.... ..++|.+++++......+ .+..+..+|+..+
T Consensus 369 iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~ 425 (454)
T KOG2680|consen 369 IRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERV 425 (454)
T ss_pred hhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHH
Confidence 9999999999999999998865 679999999987665544 3455666666553
No 203
>KOG0735|consensus
Probab=99.44 E-value=4.8e-12 Score=120.38 Aligned_cols=179 Identities=22% Similarity=0.227 Sum_probs=126.2
Q ss_pred CCCCcccccHHHHHHHHHHHhcC------------CCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc-
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSGA------------DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD- 107 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~~------------~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~- 107 (355)
-.|+++.|..++++.+.+.+.-. +.+ ++|+|||||||||.+|.+++... +..++.+.+++.
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~-----~~~fisvKGPElL 738 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS-----NLRFISVKGPELL 738 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC-----CeeEEEecCHHHH
Confidence 35899999999998888877421 222 39999999999999999999986 567777766542
Q ss_pred -----cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhhh--ccCCcc
Q psy17903 108 -----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK--ETKSTR 169 (355)
Q Consensus 108 -----~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~--~~~~~~ 169 (355)
.+...+|+.+.... ..+|| |+|+||+|.+.+ ...|.|+.-|+. +-..+.
T Consensus 739 ~KyIGaSEq~vR~lF~rA~---------~a~PC----iLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~ 805 (952)
T KOG0735|consen 739 SKYIGASEQNVRDLFERAQ---------SAKPC----ILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVY 805 (952)
T ss_pred HHHhcccHHHHHHHHHHhh---------ccCCe----EEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEE
Confidence 11233444444322 24566 999999999965 346778777763 234556
Q ss_pred EEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q psy17903 170 FCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239 (355)
Q Consensus 170 ~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 239 (355)
++.+|.+++-++|+|.+.++ .+.++.|++.+..++++......-+ -++..++.++..+.|--+.-++.|
T Consensus 806 i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-~~~vdl~~~a~~T~g~tgADlq~l 877 (952)
T KOG0735|consen 806 ILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-DTDVDLECLAQKTDGFTGADLQSL 877 (952)
T ss_pred EEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-ccccchHHHhhhcCCCchhhHHHH
Confidence 66677789999999998887 6889999999999999877653322 234457778888776554444433
No 204
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.43 E-value=7.5e-12 Score=104.77 Aligned_cols=189 Identities=17% Similarity=0.215 Sum_probs=132.8
Q ss_pred cCCCCCCcccccHHHHHHHHHH----HhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHH
Q psy17903 39 YRPKTIDDVIEQQEVVSVLKKC----LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIR 114 (355)
Q Consensus 39 ~~p~~~~~~vg~~~~~~~l~~~----l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~ 114 (355)
+.|..+.+++|-+.+.+.|.+. +++-...|+|++|..|+|||++++++..++..... ..++++..+....-.+.
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~gl--rLVEV~k~dl~~Lp~l~ 131 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGL--RLVEVDKEDLATLPDLV 131 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCC--eEEEEcHHHHhhHHHHH
Confidence 3445677889998888877654 44444445999999999999999999999977655 48898887765555555
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHH-HHHHHHh----hhccCCccEEEEecCCccccc-------
Q psy17903 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ-AALRRTM----EKETKSTRFCLICNYVSCIIQ------- 182 (355)
Q Consensus 115 ~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~-~~Ll~~l----e~~~~~~~~Il~~~~~~~l~~------- 182 (355)
+.++... .+=|||+||.-.=..+.. ..|...| +..|.|++|..++|..+-+.+
T Consensus 132 ~~Lr~~~---------------~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~ 196 (287)
T COG2607 132 ELLRARP---------------EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEG 196 (287)
T ss_pred HHHhcCC---------------ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCC
Confidence 4444322 233899999865544433 3344444 456777777777775543211
Q ss_pred ---------------cccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH-----HHHHcCCCHHHHHHHHHH
Q psy17903 183 ---------------PLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALET-----LVETSGGDMRRAITCLQS 241 (355)
Q Consensus 183 ---------------~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-----l~~~~~g~~r~~~~~l~~ 241 (355)
.+..|+. .+.|.+++.++...++...+++.++.++++.++. ...+.+.+-|.+.+.++.
T Consensus 197 ~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~ 276 (287)
T COG2607 197 STGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRD 276 (287)
T ss_pred cccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHH
Confidence 1234544 7899999999999999999999999998755544 333446788889988887
Q ss_pred HHH
Q psy17903 242 CAR 244 (355)
Q Consensus 242 ~~~ 244 (355)
++.
T Consensus 277 ~~g 279 (287)
T COG2607 277 LAG 279 (287)
T ss_pred HHh
Confidence 664
No 205
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.43 E-value=3.3e-12 Score=102.65 Aligned_cols=138 Identities=28% Similarity=0.323 Sum_probs=92.2
Q ss_pred cccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHH---HHHhh
Q psy17903 48 IEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT---FAQQT 124 (355)
Q Consensus 48 vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~---~~~~~ 124 (355)
+|++..+..+...+......+++|+||+|+|||++++.+++.+... ...++.+++............... .....
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHFLVRLLFE 78 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC--CCCeEEEehhhhhhhhHHHHHhhhhhHhHHHH
Confidence 3677888888888877555679999999999999999999998532 235566665543322222211110 00000
Q ss_pred ccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc------cCCccEEEEecCCc--cccccccCCe-eeEEec
Q psy17903 125 ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE------TKSTRFCLICNYVS--CIIQPLTSRC-SKFRFK 194 (355)
Q Consensus 125 ~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~------~~~~~~Il~~~~~~--~l~~~l~sr~-~~i~~~ 194 (355)
... . ....++++||++.+.......+...++.. ...+.+|++++... .+.+.+.+|+ ..+.++
T Consensus 79 ~~~---~----~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~ 150 (151)
T cd00009 79 LAE---K----AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIP 150 (151)
T ss_pred hhc---c----CCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecC
Confidence 000 0 13459999999999777777888877765 35677888888765 6778888888 466554
No 206
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.43 E-value=9e-12 Score=123.30 Aligned_cols=213 Identities=15% Similarity=0.107 Sum_probs=132.0
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhc-----------CCc------------------
Q psy17903 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF-----------GDM------------------ 94 (355)
Q Consensus 44 ~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~-----------~~~------------------ 94 (355)
|..++||+.++..+.-.+-.....++||+|++|+|||++|+++++.+. ++.
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 779999999999988887776666799999999999999999999872 100
Q ss_pred -cccceeeecCCCc----cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc----
Q psy17903 95 -YRERILELNASDD----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET---- 165 (355)
Q Consensus 95 -~~~~~~~~~~~~~----~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---- 165 (355)
...+++.+.+... .+..++...+. .+.......--..+++.+|||||++.+++..|+.|+..|++..
T Consensus 83 ~~~~pfv~~p~~~t~~~l~G~~d~~~~l~----~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~ 158 (633)
T TIGR02442 83 QRPVPFVNLPLGATEDRVVGSLDIERALR----EGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVE 158 (633)
T ss_pred cCCCCeeeCCCCCcHHHcCCcccHHHHhh----cCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEE
Confidence 0123333322210 01111111111 0000000000011355699999999999999999999998642
Q ss_pred ---------CCccEEEEecCC-ccccccccCCee-eEEecCCC-HHHHHHHHHHHHH-----------------------
Q psy17903 166 ---------KSTRFCLICNYV-SCIIQPLTSRCS-KFRFKPLA-ENTMLTRLQYICE----------------------- 210 (355)
Q Consensus 166 ---------~~~~~Il~~~~~-~~l~~~l~sr~~-~i~~~~~~-~~~~~~~l~~~~~----------------------- 210 (355)
..+.+|.++|.. ..+.++|..|+. .+.+..+. .++..+++.....
T Consensus 159 r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i 238 (633)
T TIGR02442 159 REGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRI 238 (633)
T ss_pred ECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHH
Confidence 345666666643 346788999986 45565554 3333333332110
Q ss_pred ------HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHH---HHhhCCCCCCHHHHHHHh
Q psy17903 211 ------QESVMCDFKALETLVETS---GG-DMRRAITCLQSC---ARLKGGEGIVNEDVLEVT 260 (355)
Q Consensus 211 ------~~~~~~~~~~~~~l~~~~---~g-~~r~~~~~l~~~---~~~~~~~~It~~~v~~~~ 260 (355)
...+.++++.+++++..+ +- .+|..+..++.+ +.+.+...|+.+||.+++
T Consensus 239 ~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~ 301 (633)
T TIGR02442 239 ARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAA 301 (633)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 124678888888888765 22 366655555443 444478899999998755
No 207
>KOG0732|consensus
Probab=99.41 E-value=7.7e-12 Score=125.02 Aligned_cols=191 Identities=19% Similarity=0.134 Sum_probs=142.4
Q ss_pred CCCCCcccccHHHHHHHHHHHhc------------CCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCLSG------------ADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l~~------------~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
-..|+++.|.+.++..|++.+-. -..|. +|++||||+|||..|++++..+....-+..++.-.+++.
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 34799999999999999987621 12333 999999999999999999999876555555554444432
Q ss_pred c------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH-----------HHHHHHHHhhhc--cCCc
Q psy17903 108 R------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-----------AQAALRRTMEKE--TKST 168 (355)
Q Consensus 108 ~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~Ll~~le~~--~~~~ 168 (355)
- ....++-.+.++....+ -|||.||+|.|.+- ....|+.+|... ...+
T Consensus 341 lskwvgEaERqlrllFeeA~k~qP-------------SIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqV 407 (1080)
T KOG0732|consen 341 LSKWVGEAERQLRLLFEEAQKTQP-------------SIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQV 407 (1080)
T ss_pred hccccCcHHHHHHHHHHHHhccCc-------------eEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCce
Confidence 1 11234444444333221 29999999988651 124567777643 3467
Q ss_pred cEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 169 RFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 169 ~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
++|.+||.++.+.++++++++ .+.|.-|+.+....++.-.-.++.-.++...+..++..+.|..+.-+..|...+.
T Consensus 408 vvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAa 486 (1080)
T KOG0732|consen 408 VVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAA 486 (1080)
T ss_pred EEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHh
Confidence 888899999999999999887 7889999999999999988888888899999999999999988887777755443
No 208
>KOG0740|consensus
Probab=99.39 E-value=7.4e-12 Score=114.94 Aligned_cols=179 Identities=16% Similarity=0.140 Sum_probs=124.0
Q ss_pred cccCCCCCCcccccHHHHHHHHHHHh----------cCCC--CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC
Q psy17903 37 EKYRPKTIDDVIEQQEVVSVLKKCLS----------GADL--PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (355)
Q Consensus 37 ~k~~p~~~~~~vg~~~~~~~l~~~l~----------~~~~--~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 104 (355)
+.-++..|+++.|.+.+...+...+- +-+. ..+|+.||||+|||.+++++|.+... .++.+.+
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~a-----tff~iSa 219 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGA-----TFFNISA 219 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcc-----eEeeccH
Confidence 34456778899998888877776542 1122 23999999999999999999999843 4555555
Q ss_pred CCccch-----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHH------------HHHHHHHhh---hc
Q psy17903 105 SDDRGI-----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA------------QAALRRTME---KE 164 (355)
Q Consensus 105 ~~~~~~-----~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~------------~~~Ll~~le---~~ 164 (355)
+...+. +.+...+...+... ..-|+||||+|.+.... .+.|+...- .+
T Consensus 220 ssLtsK~~Ge~eK~vralf~vAr~~------------qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~ 287 (428)
T KOG0740|consen 220 SSLTSKYVGESEKLVRALFKVARSL------------QPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAP 287 (428)
T ss_pred HHhhhhccChHHHHHHHHHHHHHhc------------CCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCC
Confidence 442111 11111222222222 12399999999884321 123333221 23
Q ss_pred cCCccEEEEecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q psy17903 165 TKSTRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232 (355)
Q Consensus 165 ~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~ 232 (355)
...+++|.+||.++.++.++++|+. .+.++.|+.+....++.+.+++.+..+.+..+..|++.+.|.-
T Consensus 288 ~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegys 356 (428)
T KOG0740|consen 288 DDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYS 356 (428)
T ss_pred CCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcc
Confidence 4467888889999999999999987 6778999999999999999998888888899999999876533
No 209
>KOG0735|consensus
Probab=99.39 E-value=1.1e-10 Score=111.23 Aligned_cols=223 Identities=15% Similarity=0.130 Sum_probs=151.0
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc--chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEe
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR--GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~--~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiD 144 (355)
+++||+||+|+|||.+++++++++..+ ....+..++|+... ..+.++..+.......... .--||++|
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~-~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~~~---------~PSiIvLD 501 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKD-LIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEALWY---------APSIIVLD 501 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccc-cceEEEEEechhccchhHHHHHHHHHHHHHHHHhh---------CCcEEEEc
Confidence 359999999999999999999998643 33455567776643 3445554444433332221 11299999
Q ss_pred CCCCCCHH----------HHHHHHHHh----h---hccCCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHH
Q psy17903 145 EADSMTHA----------AQAALRRTM----E---KETKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTR 204 (355)
Q Consensus 145 e~d~l~~~----------~~~~Ll~~l----e---~~~~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~ 204 (355)
++|.+... ..+.|...+ . +......||++++....+.+.|.+... ++.+++|...+..++
T Consensus 502 dld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~~~~R~~I 581 (952)
T KOG0735|consen 502 DLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPAVTRRKEI 581 (952)
T ss_pred chhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcchhHHHHH
Confidence 99998541 112222222 2 223345677777777777777665533 789999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHHHhh-------CCCCCCHHHHHHHhCCCChHHHHHHHhc--
Q psy17903 205 LQYICEQESVMCDFKALETLVETSGGDM-RRAITCLQSCARLK-------GGEGIVNEDVLEVTGVIPNPWIEKLLKV-- 274 (355)
Q Consensus 205 l~~~~~~~~~~~~~~~~~~l~~~~~g~~-r~~~~~l~~~~~~~-------~~~~It~~~v~~~~~~~~~~~~~~l~~~-- 274 (355)
|...+++....+..+.++.++..++|.. +.+....+++...+ +.+.+|.+++.+.+....+..+..+-..
T Consensus 582 L~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~ 661 (952)
T KOG0735|consen 582 LTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKS 661 (952)
T ss_pred HHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhcccccc
Confidence 9999998887888889999999998854 44445555554333 2236899999999887777666554322
Q ss_pred --------CCHHHHHHHHHHHHHcCCCHHHHHH
Q psy17903 275 --------DSFQVLEKYIEDLILEAYSATQLFD 299 (355)
Q Consensus 275 --------~~~~~~~~~l~~l~~~g~~~~~i~~ 299 (355)
+....++..+.+.+++.-....|+.
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~ 694 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFA 694 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHh
Confidence 5677888899998887655555554
No 210
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.38 E-value=1.6e-11 Score=120.49 Aligned_cols=126 Identities=14% Similarity=0.138 Sum_probs=89.2
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHhhhcc---------------------CCccEEEEecCC--ccccccccCCee---
Q psy17903 136 PPFKIVILDEADSMTHAAQAALRRTMEKET---------------------KSTRFCLICNYV--SCIIQPLTSRCS--- 189 (355)
Q Consensus 136 ~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---------------------~~~~~Il~~~~~--~~l~~~l~sr~~--- 189 (355)
+++++++|||++.|++..|..|++.|++.. .++++|+++|.. ..+.+++++|+.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 567899999999999999999999996531 245678777753 467889999886
Q ss_pred -eEEecC---CCHHH---HHHHHHHHHHHcC--CCCCHHHHHHHHHHc----------CCCHHHHHHHHHHHHHhh---C
Q psy17903 190 -KFRFKP---LAENT---MLTRLQYICEQES--VMCDFKALETLVETS----------GGDMRRAITCLQSCARLK---G 247 (355)
Q Consensus 190 -~i~~~~---~~~~~---~~~~l~~~~~~~~--~~~~~~~~~~l~~~~----------~g~~r~~~~~l~~~~~~~---~ 247 (355)
.+.|.. .+.+. +..++.+.+++.| ..++++++..+++.+ ..+.|.+.+.++.+...+ +
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~ 375 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSG 375 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 244432 23333 4555666666553 358999999988532 245788888888764433 4
Q ss_pred CCCCCHHHHHHHhC
Q psy17903 248 GEGIVNEDVLEVTG 261 (355)
Q Consensus 248 ~~~It~~~v~~~~~ 261 (355)
...|+.++|.+++.
T Consensus 376 ~~~I~~ehV~~Ai~ 389 (608)
T TIGR00764 376 KVYVTAEHVLKAKK 389 (608)
T ss_pred CceecHHHHHHHHH
Confidence 56799999998764
No 211
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.37 E-value=2.7e-11 Score=108.35 Aligned_cols=177 Identities=13% Similarity=0.079 Sum_probs=111.6
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH-
Q psy17903 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK- 116 (355)
Q Consensus 38 k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~- 116 (355)
.|.|+.-.+++-.++....+..++..+ .+++|.||||||||++++.+++.++ .+++.+++.......++...
T Consensus 38 ~~~p~~d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~-----~~~~rV~~~~~l~~~DliG~~ 110 (327)
T TIGR01650 38 EHVPDIDPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLN-----WPCVRVNLDSHVSRIDLVGKD 110 (327)
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHC-----CCeEEEEecCCCChhhcCCCc
Confidence 444554456677777777777776543 3699999999999999999999994 34555554443222111110
Q ss_pred ---H------HHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhh--------------ccCCccEEEE
Q psy17903 117 ---V------KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEK--------------ETKSTRFCLI 173 (355)
Q Consensus 117 ---i------~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~--------------~~~~~~~Il~ 173 (355)
+ ..|...+... ......++++||++...++.++.|..+||. +++..++|.+
T Consensus 111 ~~~l~~g~~~~~f~~GpL~~------A~~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT 184 (327)
T TIGR01650 111 AIVLKDGKQITEFRDGILPW------ALQHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFAT 184 (327)
T ss_pred eeeccCCcceeEEecCcchh------HHhCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEe
Confidence 0 0000000000 001334799999999999999998888873 2235667777
Q ss_pred ecCCc------------cccccccCCeee-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy17903 174 CNYVS------------CIIQPLTSRCSK-FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET 227 (355)
Q Consensus 174 ~~~~~------------~l~~~l~sr~~~-i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 227 (355)
+|... .+.++...|+.. +.+..|+.++-.+++...+....-..+++.++++++.
T Consensus 185 ~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~~~~~~~~~~i~~~mV~l 251 (327)
T TIGR01650 185 ANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAKGFDDTEGKDIINAMVRV 251 (327)
T ss_pred eCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhccCCCccchHHHHHHHHHH
Confidence 77632 357889999974 5899999999999988664321111134556665543
No 212
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.36 E-value=1.6e-11 Score=116.34 Aligned_cols=246 Identities=17% Similarity=0.159 Sum_probs=151.3
Q ss_pred ccHHHHHHHHHHHhcCCCC--eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhcc
Q psy17903 49 EQQEVVSVLKKCLSGADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTAS 126 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~--~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~ 126 (355)
+.+...+.+.+.++..... ++++.|++|+||..++++++.... ...+++.+||... ....+...+..+....+.
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~---~~gpfvAvNCaAi-p~~liesELFGy~~GafT 392 (606)
T COG3284 317 LLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE---AAGPFVAVNCAAI-PEALIESELFGYVAGAFT 392 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc---ccCCeEEEEeccc-hHHhhhHHHhccCccccc
Confidence 4444444444444332222 399999999999999999999864 4567889998752 223333333333322222
Q ss_pred CCCCCCCCC----CCcEEEEEeCCCCCCHHHHHHHHHHhhhcc----------CCccEEEEecCCc-------ccccccc
Q psy17903 127 GFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKET----------KSTRFCLICNYVS-------CIIQPLT 185 (355)
Q Consensus 127 ~~~~~~~~~----~~~~vliiDe~d~l~~~~~~~Ll~~le~~~----------~~~~~Il~~~~~~-------~l~~~l~ 185 (355)
+....|+.. ++.+.+|+||+..|+-..|..|+++|++.. ..+++|.+|+..- .+-+.|-
T Consensus 393 ga~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLy 472 (606)
T COG3284 393 GARRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLY 472 (606)
T ss_pred cchhccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHH
Confidence 222222211 567799999999999999999999998743 2456777776431 1222232
Q ss_pred CCee--eEEecCCCH-HHHHHHHHHHHHH---cCCCCCHHHHHHHHH-HcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHH
Q psy17903 186 SRCS--KFRFKPLAE-NTMLTRLQYICEQ---ESVMCDFKALETLVE-TSGGDMRRAITCLQSCARLKGGEGIVNEDVLE 258 (355)
Q Consensus 186 sr~~--~i~~~~~~~-~~~~~~l~~~~~~---~~~~~~~~~~~~l~~-~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~ 258 (355)
=|.. .|.++|+.+ .+....|.++.++ .+.++++++++.|.. .++||+|++.|.++.++..++++.|...|+..
T Consensus 473 yrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~~~~dlp~ 552 (606)
T COG3284 473 YRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRIRVSDLPP 552 (606)
T ss_pred HHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCeeEcccCCH
Confidence 2222 566666654 2223333333333 457899999998765 56999999999999999999877776555433
Q ss_pred HhC-----C---CChHHHHHHHhc--CCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy17903 259 VTG-----V---IPNPWIEKLLKV--DSFQVLEKYIEDLILEAYSATQLFDQFHDI 304 (355)
Q Consensus 259 ~~~-----~---~~~~~~~~l~~~--~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~ 304 (355)
.+- . ...+.+-+.+.+ ++...+.+.+ |++-.-++..+.+|
T Consensus 553 ~l~~~~~~~~~~~~~~~l~~al~~~~~~is~aa~~l------gi~R~T~yrklk~~ 602 (606)
T COG3284 553 ELLEEQATPREDIEKAALLAALQATNGNISEAARLL------GISRSTLYRKLKRH 602 (606)
T ss_pred HHHhhhcccccchHHHHHHHHHHHcCCCHHHHHHHh------CCCHHHHHHHHHHh
Confidence 221 1 111222222222 6666666554 78888888777664
No 213
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.34 E-value=3.1e-11 Score=112.15 Aligned_cols=187 Identities=18% Similarity=0.195 Sum_probs=113.1
Q ss_pred cccccHHHHHHHHHHHh-------c---CC--------CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 46 DVIEQQEVVSVLKKCLS-------G---AD--------LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~-------~---~~--------~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
.++||+++++.+...+. . .. ..++||+||||+|||++|+++++.+. .++..+++...
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~-----~pf~~~da~~L 152 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILN-----VPFAIADATTL 152 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcC-----CCeEEechhhc
Confidence 36899999998876651 1 11 23599999999999999999998873 23444444332
Q ss_pred cch----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHhhhc-----
Q psy17903 108 RGI----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTMEKE----- 164 (355)
Q Consensus 108 ~~~----~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~----- 164 (355)
... ......+........... .. +...+|+|||+|.+.+ +.|+.|+++|+..
T Consensus 153 ~~~gyvG~d~e~~L~~~~~~~~~~l-~~----a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~ 227 (413)
T TIGR00382 153 TEAGYVGEDVENILLKLLQAADYDV-EK----AQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVP 227 (413)
T ss_pred cccccccccHHHHHHHHHHhCcccH-Hh----cccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecc
Confidence 110 111222222111110000 00 1234999999999976 5799999999631
Q ss_pred --------cCCccEEEEecCC--------------------------------c------------------cccccccC
Q psy17903 165 --------TKSTRFCLICNYV--------------------------------S------------------CIIQPLTS 186 (355)
Q Consensus 165 --------~~~~~~Il~~~~~--------------------------------~------------------~l~~~l~s 186 (355)
..++++|+|+|-. . .+.|.+..
T Consensus 228 ~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflg 307 (413)
T TIGR00382 228 PQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIG 307 (413)
T ss_pred cCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhC
Confidence 1123445444420 0 03466677
Q ss_pred Cee-eEEecCCCHHHHHHHHHHH----HH-------HcC--CCCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Q psy17903 187 RCS-KFRFKPLAENTMLTRLQYI----CE-------QES--VMCDFKALETLVETS---GGDMRRAITCLQSC 242 (355)
Q Consensus 187 r~~-~i~~~~~~~~~~~~~l~~~----~~-------~~~--~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~ 242 (355)
|.. ++.|.+++.+++.+++... .+ ..+ +.++++++++|++.+ .--.|.+...++..
T Consensus 308 Rld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~ 380 (413)
T TIGR00382 308 RLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGL 380 (413)
T ss_pred CCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHh
Confidence 775 6889999999999987652 22 123 457899999999874 22345555555543
No 214
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.34 E-value=1.4e-10 Score=111.04 Aligned_cols=211 Identities=15% Similarity=0.150 Sum_probs=132.8
Q ss_pred cccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHh
Q psy17903 46 DVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ 123 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 123 (355)
.++|....+..+...+..- ....++++|++|+||++++++++...... ..+++.++|.... ...+...+......
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~--~~~~i~~~c~~~~-~~~~~~~lfg~~~~ 216 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARS--EKPLVTLNCAALN-ESLLESELFGHEKG 216 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCC--CCCeeeeeCCCCC-HHHHHHHhcCCCCC
Confidence 4666666555554444322 22339999999999999999999875432 3478899998643 23222222111110
Q ss_pred hccCC--CCCC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCCc-------cccc
Q psy17903 124 TASGF--NQDG-KPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYVS-------CIIQ 182 (355)
Q Consensus 124 ~~~~~--~~~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~~-------~l~~ 182 (355)
...+. ...| ...++.++|||||++.|+...|..|+.++++.. .++++|++++... .+.+
T Consensus 217 ~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~ 296 (441)
T PRK10365 217 AFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQ 296 (441)
T ss_pred CcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchH
Confidence 00000 0001 011356699999999999999999999998643 2456787776431 1223
Q ss_pred cccCCee--eEEecCCCH--HHHHHHHHHHHHH----cC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCCCC
Q psy17903 183 PLTSRCS--KFRFKPLAE--NTMLTRLQYICEQ----ES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGGEG 250 (355)
Q Consensus 183 ~l~sr~~--~i~~~~~~~--~~~~~~l~~~~~~----~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~~~~ 250 (355)
.+..+.. .+.++|+.+ +++..++...+.+ .+ ..+++++++.|..+. +||+|++.+.++.++..+.+..
T Consensus 297 ~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~~~~~~ 376 (441)
T PRK10365 297 DLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVLLTGEY 376 (441)
T ss_pred HHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCc
Confidence 3333333 455555553 3554444444332 23 358999999999876 9999999999999887777778
Q ss_pred CCHHHHHHH
Q psy17903 251 IVNEDVLEV 259 (355)
Q Consensus 251 It~~~v~~~ 259 (355)
|+.+++...
T Consensus 377 i~~~~l~~~ 385 (441)
T PRK10365 377 ISERELPLA 385 (441)
T ss_pred cchHhCchh
Confidence 998887643
No 215
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.33 E-value=4.7e-11 Score=104.93 Aligned_cols=215 Identities=14% Similarity=0.075 Sum_probs=131.4
Q ss_pred cccccHHH---HHHHHHHHh---cCCCCeEEEECCCCCCHHHHHHHHHHHhcC----CccccceeeecCCCccchHHHHH
Q psy17903 46 DVIEQQEV---VSVLKKCLS---GADLPHFLFYGPPGTGKTSTMIAACHQLFG----DMYRERILELNASDDRGIQVIRD 115 (355)
Q Consensus 46 ~~vg~~~~---~~~l~~~l~---~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~i~~ 115 (355)
..||.+.+ ++.|.+.+. ..+.|+++|+|++|.|||++++.+++.... +....+++.+.+....+...+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~ 114 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYS 114 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHH
Confidence 35565544 455555554 456778999999999999999999987643 11224566666655444444443
Q ss_pred HHHHHHHhhccCCCCCCC---------CCCCcEEEEEeCCCCCCH---HHHHHHHHHhhhcc--CCccEEEEecCC----
Q psy17903 116 KVKTFAQQTASGFNQDGK---------PCPPFKIVILDEADSMTH---AAQAALRRTMEKET--KSTRFCLICNYV---- 177 (355)
Q Consensus 116 ~i~~~~~~~~~~~~~~~~---------~~~~~~vliiDe~d~l~~---~~~~~Ll~~le~~~--~~~~~Il~~~~~---- 177 (355)
.+-.....+......... ..-+-|+|||||+|.+.. ..|..+++.|..-. -.+.+|+++...
T Consensus 115 ~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~a 194 (302)
T PF05621_consen 115 AILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRA 194 (302)
T ss_pred HHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHH
Confidence 333322221111000000 001457999999999732 33444443333211 123344444321
Q ss_pred ccccccccCCeeeEEecCCCH-HHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHcCCCHHHHHHHHHHHHHhh---CC
Q psy17903 178 SCIIQPLTSRCSKFRFKPLAE-NTMLTRLQYICEQES----VMC-DFKALETLVETSGGDMRRAITCLQSCARLK---GG 248 (355)
Q Consensus 178 ~~l~~~l~sr~~~i~~~~~~~-~~~~~~l~~~~~~~~----~~~-~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~---~~ 248 (355)
-.-++++.+|+..+.+++... ++....+...-.... -.+ +++....|...++|.++.+.+.+..++..+ |.
T Consensus 195 l~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~~aA~~AI~sG~ 274 (302)
T PF05621_consen 195 LRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLNAAAIAAIRSGE 274 (302)
T ss_pred hccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhcCC
Confidence 234688999999998888775 455555554433221 123 457778999999999999999999888776 67
Q ss_pred CCCCHHHHHHHh
Q psy17903 249 EGIVNEDVLEVT 260 (355)
Q Consensus 249 ~~It~~~v~~~~ 260 (355)
+.||.+.+..+-
T Consensus 275 E~It~~~l~~~~ 286 (302)
T PF05621_consen 275 ERITREILDKID 286 (302)
T ss_pred ceecHHHHhhCC
Confidence 889999988753
No 216
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.33 E-value=3.7e-11 Score=110.28 Aligned_cols=109 Identities=21% Similarity=0.237 Sum_probs=79.1
Q ss_pred CCcEEEEEeCCCCCCH------------HHHHHHHHHhhhcc----------CCccEEEEec----CCccccccccCCee
Q psy17903 136 PPFKIVILDEADSMTH------------AAQAALRRTMEKET----------KSTRFCLICN----YVSCIIQPLTSRCS 189 (355)
Q Consensus 136 ~~~~vliiDe~d~l~~------------~~~~~Ll~~le~~~----------~~~~~Il~~~----~~~~l~~~l~sr~~ 189 (355)
..+.||||||+|.+.. ..|+.|++++|-.. .+..||+++. .+..++|.+.-|+.
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P 325 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP 325 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence 3667999999999853 36899999998521 3445555443 34558899999988
Q ss_pred -eEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH
Q psy17903 190 -KFRFKPLAENTMLTRLQ-----------YICEQESV--MCDFKALETLVETS--------GGDMRRAITCLQSCAR 244 (355)
Q Consensus 190 -~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~--------~g~~r~~~~~l~~~~~ 244 (355)
++.+.+++.+++..+|. ..++.+|+ .++++++..|++.+ +--.|.+...++++..
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~ 402 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLE 402 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 78999999999998872 22334554 56899999998875 3456777777776643
No 217
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.33 E-value=4.5e-11 Score=116.91 Aligned_cols=126 Identities=16% Similarity=0.236 Sum_probs=85.9
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHhhhcc---------------------CCccEEEEecCC--ccccccccCCee---
Q psy17903 136 PPFKIVILDEADSMTHAAQAALRRTMEKET---------------------KSTRFCLICNYV--SCIIQPLTSRCS--- 189 (355)
Q Consensus 136 ~~~~vliiDe~d~l~~~~~~~Ll~~le~~~---------------------~~~~~Il~~~~~--~~l~~~l~sr~~--- 189 (355)
+++.+|||||++.|++..|..|++.|++.. .++++|++++.. ..+.+.+.+|+.
T Consensus 225 AnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~ 304 (637)
T PRK13765 225 AHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYG 304 (637)
T ss_pred CCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCe
Confidence 567899999999999999999999986432 245788888764 345677888874
Q ss_pred -eEEecCC---CHHHHHHHHHHHHHH---c--CCCCCHHHHHHHHHHc---CCC-------HHHHHHHHHHHHHhh---C
Q psy17903 190 -KFRFKPL---AENTMLTRLQYICEQ---E--SVMCDFKALETLVETS---GGD-------MRRAITCLQSCARLK---G 247 (355)
Q Consensus 190 -~i~~~~~---~~~~~~~~l~~~~~~---~--~~~~~~~~~~~l~~~~---~g~-------~r~~~~~l~~~~~~~---~ 247 (355)
.+.|..- +.+....+++.+++. . -..++++++..|++.+ .|+ .|.+.+.++.+...+ +
T Consensus 305 v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~ 384 (637)
T PRK13765 305 YEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEG 384 (637)
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhc
Confidence 3555532 345555565555443 2 2368999999988754 233 666666666655444 4
Q ss_pred CCCCCHHHHHHHhC
Q psy17903 248 GEGIVNEDVLEVTG 261 (355)
Q Consensus 248 ~~~It~~~v~~~~~ 261 (355)
...++.+++.++..
T Consensus 385 ~~~i~~~~v~~a~~ 398 (637)
T PRK13765 385 AELTTAEHVLEAKK 398 (637)
T ss_pred cceecHHHHHHHHH
Confidence 55688888877653
No 218
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=99.30 E-value=1.5e-11 Score=102.17 Aligned_cols=163 Identities=15% Similarity=0.207 Sum_probs=112.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC-CccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCC-
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG-DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA- 146 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~- 146 (355)
|+|||+.-.-+...++.+.+.+.. +....++..+++.+.. ..+.+......+.. +++++|+|.++
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~s~slF---------~~~klvii~~~~ 67 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDFDDFNVIVFDGSEDD----IDELLEELQSPSLF---------GDKKLVIIKNAP 67 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTEEEEEEEE-STTS-H----HH-HTTTSTTTTSS---------SSEEEEEEE---
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCCccceEEEEccccCc----HHHHHHHHhcCCcc---------CCCeEEEEecCc
Confidence 689999977777777777777433 3444566666665531 11122222222222 26789999999
Q ss_pred ---CCCCHHHHHHHHHHhhhccCCccEEEEec-CCc---cccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Q psy17903 147 ---DSMTHAAQAALRRTMEKETKSTRFCLICN-YVS---CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFK 219 (355)
Q Consensus 147 ---d~l~~~~~~~Ll~~le~~~~~~~~Il~~~-~~~---~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 219 (355)
+....+....|..++++++.++++|+.++ ..+ ++.+.+.+.+..+.|.+++..++..|++..+++.|+.++++
T Consensus 68 ~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~ 147 (172)
T PF06144_consen 68 FLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAKKNGLKIDPD 147 (172)
T ss_dssp --TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHHHTT-EE-HH
T ss_pred cccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHHHcCCCCCHH
Confidence 45666778899999999999998888887 333 46788888999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 220 ALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 220 ~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
+++.|+...++|++.+.+++++++.
T Consensus 148 a~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 148 AAQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcC
Confidence 9999999999999999999999863
No 219
>KOG0744|consensus
Probab=99.30 E-value=6e-11 Score=103.46 Aligned_cols=156 Identities=20% Similarity=0.294 Sum_probs=104.1
Q ss_pred CCcccccHHHHHHHHHHHh-------cCCCC-----e--EEEECCCCCCHHHHHHHHHHHhc----CCccccceeeecCC
Q psy17903 44 IDDVIEQQEVVSVLKKCLS-------GADLP-----H--FLFYGPPGTGKTSTMIAACHQLF----GDMYRERILELNAS 105 (355)
Q Consensus 44 ~~~~vg~~~~~~~l~~~l~-------~~~~~-----~--~ll~Gp~G~GKt~la~~l~~~l~----~~~~~~~~~~~~~~ 105 (355)
|+.++.....++++..++. .+-.+ + +|++||||+|||++++++|+.+. ...+...++++|+.
T Consensus 141 WEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh 220 (423)
T KOG0744|consen 141 WESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH 220 (423)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehh
Confidence 5556666677777766542 11111 1 99999999999999999999984 24455678898875
Q ss_pred Ccc---------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH---------------HHHHHHHHHh
Q psy17903 106 DDR---------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH---------------AAQAALRRTM 161 (355)
Q Consensus 106 ~~~---------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~---------------~~~~~Ll~~l 161 (355)
... .+..+.+.+.++..... ..-.|+|||++.+.. ...|+|+.-|
T Consensus 221 sLFSKWFsESgKlV~kmF~kI~ELv~d~~-----------~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl 289 (423)
T KOG0744|consen 221 SLFSKWFSESGKLVAKMFQKIQELVEDRG-----------NLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL 289 (423)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhCCC-----------cEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH
Confidence 421 12344455555443321 334789999998843 2357777777
Q ss_pred hhcc--CCccEEEEecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHH
Q psy17903 162 EKET--KSTRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICE 210 (355)
Q Consensus 162 e~~~--~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~ 210 (355)
++.. +++.++.++|-.+.++.++..|.. +..+.+|+...+..+++.-..
T Consensus 290 DrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 290 DRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HHhccCCCEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHH
Confidence 6532 344444444556789999999988 567799999999999887655
No 220
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.28 E-value=4.8e-11 Score=98.05 Aligned_cols=128 Identities=17% Similarity=0.155 Sum_probs=77.9
Q ss_pred ccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhh
Q psy17903 47 VIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQT 124 (355)
Q Consensus 47 ~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~ 124 (355)
++|.+..+..+.+.++.- ...+++|+|++||||+.+|+++++.... .+.+++.+||+.. ..+.+...+.......
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r--~~~pfi~vnc~~~-~~~~~e~~LFG~~~~~ 77 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR--KNGPFISVNCAAL-PEELLESELFGHEKGA 77 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT--TTS-EEEEETTTS--HHHHHHHHHEBCSSS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc--ccCCeEEEehhhh-hcchhhhhhhcccccc
Confidence 578888887777776542 2234999999999999999999985432 3458999999874 2222222111110000
Q ss_pred ccCCCC--CC-CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCccEEEEecCC
Q psy17903 125 ASGFNQ--DG-KPCPPFKIVILDEADSMTHAAQAALRRTMEKE-----------TKSTRFCLICNYV 177 (355)
Q Consensus 125 ~~~~~~--~~-~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~ 177 (355)
..+... .| -..+++++|||||++.|+++.|..|+++|++. +.++++|++|+..
T Consensus 78 ~~~~~~~~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 78 FTGARSDKKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp STTTSSEBEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-
T ss_pred ccccccccCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcC
Confidence 000000 00 00045679999999999999999999999863 2367888888743
No 221
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.28 E-value=8e-11 Score=108.12 Aligned_cols=108 Identities=22% Similarity=0.236 Sum_probs=78.3
Q ss_pred CcEEEEEeCCCCCCH------------HHHHHHHHHhhhcc----------CCccEEEEec----CCccccccccCCee-
Q psy17903 137 PFKIVILDEADSMTH------------AAQAALRRTMEKET----------KSTRFCLICN----YVSCIIQPLTSRCS- 189 (355)
Q Consensus 137 ~~~vliiDe~d~l~~------------~~~~~Ll~~le~~~----------~~~~~Il~~~----~~~~l~~~l~sr~~- 189 (355)
..+||||||+|.+.. ..|+.|++++|... .+..||+++. .+..++|.+.-|+.
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 567999999999853 36899999998521 3344554442 34558899999988
Q ss_pred eEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc--------CCCHHHHHHHHHHHHH
Q psy17903 190 KFRFKPLAENTMLTRLQY-----------ICEQESV--MCDFKALETLVETS--------GGDMRRAITCLQSCAR 244 (355)
Q Consensus 190 ~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~~--------~g~~r~~~~~l~~~~~ 244 (355)
++.+.+++.+++.++|.. .++.+|+ .+++++++.|++.+ +--.|.+...++++..
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~ 404 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLE 404 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHH
Confidence 789999999999888732 2334555 57899999998875 3346777777776643
No 222
>KOG0651|consensus
Probab=99.26 E-value=4.4e-11 Score=103.72 Aligned_cols=170 Identities=22% Similarity=0.280 Sum_probs=108.7
Q ss_pred CCCcccccHHHHHHHHHHHhc-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc--
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSG-----------A-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD-- 107 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-- 107 (355)
+|+.+.|...++..+.+.+.- | .+|. ++||||||+|||.+|++++..+.. +++...++..
T Consensus 130 s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~-----nfl~v~ss~lv~ 204 (388)
T KOG0651|consen 130 SFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGV-----NFLKVVSSALVD 204 (388)
T ss_pred CHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCC-----ceEEeeHhhhhh
Confidence 889999999999988887631 2 2333 999999999999999999999844 4444333321
Q ss_pred ----cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhhhc-----cCC
Q psy17903 108 ----RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEKE-----TKS 167 (355)
Q Consensus 108 ----~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~-----~~~ 167 (355)
.+...|++.+....... +| ++|+||+|.... ..|..|.+++.+. -..
T Consensus 205 kyiGEsaRlIRemf~yA~~~~---------pc----iifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~r 271 (388)
T KOG0651|consen 205 KYIGESARLIRDMFRYAREVI---------PC----IIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHR 271 (388)
T ss_pred hhcccHHHHHHHHHHHHhhhC---------ce----EEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhccc
Confidence 12234555544444332 23 999999997732 3355566665432 246
Q ss_pred ccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcCC
Q psy17903 168 TRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQE--SVMCDFKALETLVETSGG 230 (355)
Q Consensus 168 ~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~g 230 (355)
+.+|+++|+++.++|+|.+.++ .++.+-|++.....+++-....- --.++.+++-.+++..+|
T Consensus 272 Vk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 272 VKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred ccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccCh
Confidence 7899999999999999988776 46666555544444433222211 113555555555554443
No 223
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.26 E-value=1.4e-10 Score=106.51 Aligned_cols=154 Identities=19% Similarity=0.130 Sum_probs=99.4
Q ss_pred cccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHH---
Q psy17903 46 DVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ--- 122 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~--- 122 (355)
.++|+++++..+...+..+. |++|.||||+|||++|+.+++.+. .+++.+.+.......++.........
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--~vll~G~PG~gKT~la~~lA~~l~-----~~~~~i~~t~~l~p~d~~G~~~~~~~~~~ 97 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--HVLLEGPPGVGKTLLARALARALG-----LPFVRIQCTPDLLPSDLLGTYAYAALLLE 97 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--CEEEECCCCccHHHHHHHHHHHhC-----CCeEEEecCCCCCHHHhcCchhHhhhhcc
Confidence 48888888888777776654 799999999999999999999994 46677777654444333222111111
Q ss_pred hhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc------------CCccEEEEec-----CCcccccccc
Q psy17903 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET------------KSTRFCLICN-----YVSCIIQPLT 185 (355)
Q Consensus 123 ~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------~~~~~Il~~~-----~~~~l~~~l~ 185 (355)
..........-..+-+.++++||+++..+..++.|+..|++.. ....+|.+.| ....+.+++.
T Consensus 98 ~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~l 177 (329)
T COG0714 98 PGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALL 177 (329)
T ss_pred CCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHH
Confidence 1111000000000111499999999999999999999998721 2233444446 2345789999
Q ss_pred CCe-eeEEecCCCHHHHHHHHH
Q psy17903 186 SRC-SKFRFKPLAENTMLTRLQ 206 (355)
Q Consensus 186 sr~-~~i~~~~~~~~~~~~~l~ 206 (355)
.|| ..+.+..|..++...++.
T Consensus 178 dRf~~~~~v~yp~~~~e~~~i~ 199 (329)
T COG0714 178 DRFLLRIYVDYPDSEEEERIIL 199 (329)
T ss_pred hhEEEEEecCCCCchHHHHHHH
Confidence 999 678888884444444333
No 224
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.26 E-value=3.5e-12 Score=102.08 Aligned_cols=116 Identities=21% Similarity=0.199 Sum_probs=72.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d 147 (355)
+++|+||||||||++++.+++.+ +.++..+++......+.+.................-.....+..+++|||++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~-----~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin 75 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL-----GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEIN 75 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH-----TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCG
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-----hcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcc
Confidence 48999999999999999999998 3455666666554444433211110000000000000000145799999999
Q ss_pred CCCHHHHHHHHHHhhhcc-------------C------CccEEEEecCCc----cccccccCCe
Q psy17903 148 SMTHAAQAALRRTMEKET-------------K------STRFCLICNYVS----CIIQPLTSRC 188 (355)
Q Consensus 148 ~l~~~~~~~Ll~~le~~~-------------~------~~~~Il~~~~~~----~l~~~l~sr~ 188 (355)
...++.++.|+.++++.. . +.++|+++|... .+.+++++||
T Consensus 76 ~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 76 RAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp G--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred cCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 999999999999987521 1 278888888776 6888999886
No 225
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.1e-10 Score=114.62 Aligned_cols=199 Identities=20% Similarity=0.195 Sum_probs=143.4
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccc-----cceeeecCCCc
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYR-----ERILELNASDD 107 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~-----~~~~~~~~~~~ 107 (355)
.-+++.-|-..++.++|+++.++++.+.+......+-++.|+||+|||.++.-+|..+..+..+ ..++.++....
T Consensus 158 ~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L 237 (786)
T COG0542 158 RDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL 237 (786)
T ss_pred hhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH
Confidence 4455566677899999999999999999988777778999999999999999999998653322 23445544321
Q ss_pred ------cc--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHhhhccCCccE
Q psy17903 108 ------RG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT---------HAAQAALRRTMEKETKSTRF 170 (355)
Q Consensus 108 ------~~--~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---------~~~~~~Ll~~le~~~~~~~~ 170 (355)
.+ .+.+...+...... +.-|+||||+|.+- .++.|.|...|.++ ...+
T Consensus 238 vAGakyRGeFEeRlk~vl~ev~~~-------------~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARG--eL~~ 302 (786)
T COG0542 238 VAGAKYRGEFEERLKAVLKEVEKS-------------KNVILFIDEIHTIVGAGATEGGAMDAANLLKPALARG--ELRC 302 (786)
T ss_pred hccccccCcHHHHHHHHHHHHhcC-------------CCeEEEEechhhhcCCCcccccccchhhhhHHHHhcC--CeEE
Confidence 11 12333333333322 23499999999883 23556677777644 4566
Q ss_pred EEEecC--Cc---cccccccCCeeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHH
Q psy17903 171 CLICNY--VS---CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGGD------MRRA 235 (355)
Q Consensus 171 Il~~~~--~~---~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~------~r~~ 235 (355)
|.+|+- .. .-+++|.+|++.|.+..|+.++...+|+....+ .++.++++++.+.+..+... +.++
T Consensus 303 IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKA 382 (786)
T COG0542 303 IGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKA 382 (786)
T ss_pred EEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchH
Confidence 777752 11 246899999999999999999999999877654 68899999999988877543 4678
Q ss_pred HHHHHHHHHhh
Q psy17903 236 ITCLQSCARLK 246 (355)
Q Consensus 236 ~~~l~~~~~~~ 246 (355)
+..++.++...
T Consensus 383 IDLiDeA~a~~ 393 (786)
T COG0542 383 IDLLDEAGARV 393 (786)
T ss_pred HHHHHHHHHHH
Confidence 88888776543
No 226
>PHA02244 ATPase-like protein
Probab=99.22 E-value=2.5e-10 Score=103.36 Aligned_cols=129 Identities=15% Similarity=0.116 Sum_probs=84.3
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHH---HHHHhhccCCCCC
Q psy17903 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK---TFAQQTASGFNQD 131 (355)
Q Consensus 55 ~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~---~~~~~~~~~~~~~ 131 (355)
..+.+++..+. +++|+||+|||||++|+++++.+.. +++.++.... ...+...+. .+...+...
T Consensus 110 ~ri~r~l~~~~--PVLL~GppGtGKTtLA~aLA~~lg~-----pfv~In~l~d--~~~L~G~i~~~g~~~dgpLl~---- 176 (383)
T PHA02244 110 ADIAKIVNANI--PVFLKGGAGSGKNHIAEQIAEALDL-----DFYFMNAIMD--EFELKGFIDANGKFHETPFYE---- 176 (383)
T ss_pred HHHHHHHhcCC--CEEEECCCCCCHHHHHHHHHHHhCC-----CEEEEecChH--HHhhcccccccccccchHHHH----
Confidence 34555665543 5899999999999999999999743 4455542110 000000000 000000000
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhh-----------ccCCccEEEEecCC-----------ccccccccCCee
Q psy17903 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEK-----------ETKSTRFCLICNYV-----------SCIIQPLTSRCS 189 (355)
Q Consensus 132 ~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~-----------~~~~~~~Il~~~~~-----------~~l~~~l~sr~~ 189 (355)
...++.+++|||++.+.++.+..|...++. .+.++++|+++|.. ..+.+++.+|+.
T Consensus 177 --A~~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv 254 (383)
T PHA02244 177 --AFKKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFA 254 (383)
T ss_pred --HhhcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcE
Confidence 001345999999999999999999998863 24678899999862 346789999999
Q ss_pred eEEecCCCH
Q psy17903 190 KFRFKPLAE 198 (355)
Q Consensus 190 ~i~~~~~~~ 198 (355)
.++|..|+.
T Consensus 255 ~I~~dyp~~ 263 (383)
T PHA02244 255 PIEFDYDEK 263 (383)
T ss_pred EeeCCCCcH
Confidence 999988874
No 227
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.22 E-value=6e-10 Score=106.60 Aligned_cols=216 Identities=19% Similarity=0.182 Sum_probs=124.6
Q ss_pred CCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc-ch----HHHHH-
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR-GI----QVIRD- 115 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-~~----~~i~~- 115 (355)
.+|+++.|+..+++.+...+..+ .+++|.||+|+|||++++.++..+..... ...++....... +. ..+..
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g--~~vlliG~pGsGKTtlar~l~~llp~~~~-~~~le~~~i~s~~g~~~~~~~~~~~ 265 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG--HNLLLFGPPGSGKTMLASRLQGILPPLTN-EEAIETARIWSLVGKLIDRKQIKQR 265 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC--CEEEEEecCCCCHHHHHHHHhcccCCCCC-cEEEeccccccchhhhccccccccC
Confidence 37999999999998888887655 36999999999999999999886532111 111221111000 00 00000
Q ss_pred -------HH--HHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-------------CCccEEEE
Q psy17903 116 -------KV--KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTRFCLI 173 (355)
Q Consensus 116 -------~i--~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~ 173 (355)
.. ......+ .......-..+++.++||||++.+.+..++.|+..||+.. .++.+|.+
T Consensus 266 Pf~~p~~s~s~~~~~ggg-~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa 344 (499)
T TIGR00368 266 PFRSPHHSASKPALVGGG-PIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPARFQLVAA 344 (499)
T ss_pred CccccccccchhhhhCCc-cccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEe
Confidence 00 0000000 0000000011456799999999999999999999998642 46778888
Q ss_pred ecCC------c-----------------cccccccCCee-eEEecCCCHHHH------------HHHHHHH-HHH----c
Q psy17903 174 CNYV------S-----------------CIIQPLTSRCS-KFRFKPLAENTM------------LTRLQYI-CEQ----E 212 (355)
Q Consensus 174 ~~~~------~-----------------~l~~~l~sr~~-~i~~~~~~~~~~------------~~~l~~~-~~~----~ 212 (355)
+|.. . ++..+|.+|+. .+.+++++.+++ .+.+... ..+ .
T Consensus 345 ~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~~q~~R~~ 424 (499)
T TIGR00368 345 MNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKAREIQNIRYE 424 (499)
T ss_pred cCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 8742 1 46677888887 567777655443 2333211 111 0
Q ss_pred C------------------CCCCHHHHHHHH---HHcCCCHHHHHHHHHH---HHHhhCCCCCCHHHHHHHhC
Q psy17903 213 S------------------VMCDFKALETLV---ETSGGDMRRAITCLQS---CARLKGGEGIVNEDVLEVTG 261 (355)
Q Consensus 213 ~------------------~~~~~~~~~~l~---~~~~g~~r~~~~~l~~---~~~~~~~~~It~~~v~~~~~ 261 (355)
+ ..+++++.+.+. ...+-+.|.....|.- ++.+.+...|+.++|.+++.
T Consensus 425 ~~~~~~~N~~l~~~~l~~~~~l~~~~~~~l~~a~~~~~lS~R~~~rilrvArTiAdL~g~~~i~~~hv~eA~~ 497 (499)
T TIGR00368 425 KFANINKNADLNSDEIEQFCKLSAIDANDLEGALNKLGLSSRATHRILKVARTIADLKEEKNISREHLAEAIE 497 (499)
T ss_pred CCCCCcccccCCHHHHHhhcCCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHh
Confidence 1 123444444433 3334455655555544 44444778899999988763
No 228
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.22 E-value=1.3e-09 Score=105.44 Aligned_cols=153 Identities=17% Similarity=0.186 Sum_probs=90.1
Q ss_pred cccccHHHHHHHHHHHhcCCC------------CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccch--H
Q psy17903 46 DVIEQQEVVSVLKKCLSGADL------------PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI--Q 111 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~~~~------------~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~ 111 (355)
.+.|++.++..+.-.+-+|.. .|+||+|+||+|||++|+.+++...... +......+..+. .
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~----~~~~~~~~~~~l~~~ 279 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAV----YTTGKGSSAVGLTAA 279 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcce----EcCCCCCCcCCcccc
Confidence 456777776666655544421 2699999999999999999999764321 111111110000 0
Q ss_pred HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-------------CCccEEEEecCCc
Q psy17903 112 VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTRFCLICNYVS 178 (355)
Q Consensus 112 ~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~~ 178 (355)
.+++. . .+......+.-..++.++++|||++.+.+..|..|++.||+.. ..+.+|.++|...
T Consensus 280 ~~~~~---~--~g~~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~ 354 (509)
T smart00350 280 VTRDP---E--TREFTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG 354 (509)
T ss_pred ceEcc---C--cceEEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCC
Confidence 01100 0 0000000000011355699999999999999999999998642 4567787787531
Q ss_pred -------------cccccccCCee-e-EEecCCCHHHHHHHHHH
Q psy17903 179 -------------CIIQPLTSRCS-K-FRFKPLAENTMLTRLQY 207 (355)
Q Consensus 179 -------------~l~~~l~sr~~-~-i~~~~~~~~~~~~~l~~ 207 (355)
.+.+++.+|+. . +-...++.+.-..++.+
T Consensus 355 g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 355 GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred cccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence 46788999995 2 33455665554454444
No 229
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.20 E-value=8.8e-10 Score=108.09 Aligned_cols=194 Identities=14% Similarity=0.099 Sum_probs=117.5
Q ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHH--HHHHhhccCCCCCCCCCCCcEE
Q psy17903 63 GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK--TFAQQTASGFNQDGKPCPPFKI 140 (355)
Q Consensus 63 ~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~--~~~~~~~~~~~~~~~~~~~~~v 140 (355)
+....|+||.|++|+|||++|+++++.+... .+++.+.... ..+.+...+. .....+.......--..+++.+
T Consensus 13 ~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~---~pfv~i~~~~--t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~Gv 87 (589)
T TIGR02031 13 DPSLGGVAIRARAGTGKTALARALAEILPPI---MPFVELPLGV--TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGV 87 (589)
T ss_pred CCCcceEEEEcCCCcHHHHHHHHHHHhCCcC---CCeEecCccc--chhhcccchhhhhhhhcCcccCCCCCeeeCCCCc
Confidence 3345679999999999999999999987442 1345444311 1111111110 0000010000000001135569
Q ss_pred EEEeCCCCCCHHHHHHHHHHhhhcc-------------CCccEEEEecCCc---cccccccCCee-eEEec-CCCHHHHH
Q psy17903 141 VILDEADSMTHAAQAALRRTMEKET-------------KSTRFCLICNYVS---CIIQPLTSRCS-KFRFK-PLAENTML 202 (355)
Q Consensus 141 liiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~~---~l~~~l~sr~~-~i~~~-~~~~~~~~ 202 (355)
|+|||++.+++..|+.|+..|++.. ..+.+|.++|... .+.+++..|+. .+.+. .++.++..
T Consensus 88 L~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~ 167 (589)
T TIGR02031 88 LYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRV 167 (589)
T ss_pred EeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHH
Confidence 9999999999999999999998653 3456676666543 57788888877 34443 33445444
Q ss_pred HHHHHHH---------------------H--HcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHH---HHHhhCCCCCC
Q psy17903 203 TRLQYIC---------------------E--QESVMCDFKALETLVETS---GG-DMRRAITCLQS---CARLKGGEGIV 252 (355)
Q Consensus 203 ~~l~~~~---------------------~--~~~~~~~~~~~~~l~~~~---~g-~~r~~~~~l~~---~~~~~~~~~It 252 (355)
++++... + ...+.++++.++++++.+ +- .+|..+..++. .+.+.+...++
T Consensus 168 eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~V~ 247 (589)
T TIGR02031 168 EIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTEVT 247 (589)
T ss_pred HHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCCCC
Confidence 5444422 1 135678999888888765 22 36666655543 34444788999
Q ss_pred HHHHHHHhC
Q psy17903 253 NEDVLEVTG 261 (355)
Q Consensus 253 ~~~v~~~~~ 261 (355)
.+|+..++.
T Consensus 248 ~~Dv~~a~~ 256 (589)
T TIGR02031 248 EEDLKLAVE 256 (589)
T ss_pred HHHHHHHHH
Confidence 999998763
No 230
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.20 E-value=7.5e-11 Score=98.47 Aligned_cols=128 Identities=22% Similarity=0.231 Sum_probs=73.2
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCC----------------
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD---------------- 106 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~---------------- 106 (355)
+|.+++||+.++..+.-+..++ .|+|++||||+|||++|+++..-+..-. .....++....
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~--h~lLl~GppGtGKTmlA~~l~~lLP~l~-~~e~le~~~i~s~~~~~~~~~~~~~~P 77 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG--HHLLLIGPPGTGKTMLARRLPSLLPPLT-EEEALEVSKIYSVAGLGPDEGLIRQRP 77 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC----EEEES-CCCTHHHHHHHHHHCS--CC-EECCESS--S-TT---S---EEEE---
T ss_pred ChhhhcCcHHHHHHHHHHHcCC--CCeEEECCCCCCHHHHHHHHHHhCCCCc-hHHHhhhccccccccCCCCCceecCCC
Confidence 4889999999999999888865 4799999999999999999997653210 00111111000
Q ss_pred ccch-HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCccEEE
Q psy17903 107 DRGI-QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-------------TKSTRFCL 172 (355)
Q Consensus 107 ~~~~-~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~~Il 172 (355)
.... ..+ ....+..... ...+..-..+.+.|+|+||+..+.+...+.|+..|++. +.+..+|.
T Consensus 78 fr~phhs~--s~~~liGgg~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~lv~ 154 (206)
T PF01078_consen 78 FRAPHHSA--SEAALIGGGR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPARFLLVA 154 (206)
T ss_dssp EEEE-TT----HHHHHEEGG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEEEE
T ss_pred cccCCCCc--CHHHHhCCCc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecccEEEE
Confidence 0000 000 0011111110 00000001146679999999999999999999999864 44566777
Q ss_pred EecC
Q psy17903 173 ICNY 176 (355)
Q Consensus 173 ~~~~ 176 (355)
+.|.
T Consensus 155 a~NP 158 (206)
T PF01078_consen 155 AMNP 158 (206)
T ss_dssp EE-S
T ss_pred Eecc
Confidence 7764
No 231
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.16 E-value=8.5e-10 Score=102.57 Aligned_cols=150 Identities=18% Similarity=0.240 Sum_probs=95.8
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCcc--ccceeeecCCC------------ccc
Q psy17903 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY--RERILELNASD------------DRG 109 (355)
Q Consensus 44 ~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~--~~~~~~~~~~~------------~~~ 109 (355)
++++++.+..++.+...+..+ .+++|+||||+|||++|+.++..+.++.. ....+.+...- ..+
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vg 251 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVG 251 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCC
Confidence 667888888898888888754 47999999999999999999999865321 12222222111 000
Q ss_pred h----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHhhh---------------------
Q psy17903 110 I----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA-QAALRRTMEK--------------------- 163 (355)
Q Consensus 110 ~----~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~-~~~Ll~~le~--------------------- 163 (355)
. ..+.+.+......+ . ...+|||||+++...+. ...++.+||.
T Consensus 252 y~~~~G~f~~~~~~A~~~p-------~----~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f 320 (459)
T PRK11331 252 FRRKDGIFYNFCQQAKEQP-------E----KKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERF 320 (459)
T ss_pred eEecCchHHHHHHHHHhcc-------c----CCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccc
Confidence 0 01111111111110 1 23599999999998654 5566666652
Q ss_pred -ccCCccEEEEecCCc----cccccccCCeeeEEecC-CCHHHHHHHHH
Q psy17903 164 -ETKSTRFCLICNYVS----CIIQPLTSRCSKFRFKP-LAENTMLTRLQ 206 (355)
Q Consensus 164 -~~~~~~~Il~~~~~~----~l~~~l~sr~~~i~~~~-~~~~~~~~~l~ 206 (355)
.+.++.+|.|.|..+ .+..++++|+..+++.| ++...+.+++.
T Consensus 321 ~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~ 369 (459)
T PRK11331 321 YVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL 369 (459)
T ss_pred cCCCCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH
Confidence 235677888888665 47889999999998877 45555666654
No 232
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.15 E-value=6.1e-11 Score=97.76 Aligned_cols=103 Identities=24% Similarity=0.355 Sum_probs=69.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc-CCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF-GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 146 (355)
+++|.||+|||||.+|+++++.+. +.. .+++.+|++.....+.....+......+..... ..+..||++||+
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~~~~~--~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~-----~~~~gVVllDEi 77 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLFVGSE--RPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVG-----AEEGGVVLLDEI 77 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT-SSC--CEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHH-----HHHHTEEEEETG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccCCc--cchHHHhhhcccccchHHhhhhhhhhcccceee-----ccchhhhhhHHH
Confidence 499999999999999999999997 443 367888887765522211111111111100000 002239999999
Q ss_pred CCCCH-----------HHHHHHHHHhhhcc-----------CCccEEEEecCC
Q psy17903 147 DSMTH-----------AAQAALRRTMEKET-----------KSTRFCLICNYV 177 (355)
Q Consensus 147 d~l~~-----------~~~~~Ll~~le~~~-----------~~~~~Il~~~~~ 177 (355)
|...+ ..|+.|+++||+.. .+++||+++|--
T Consensus 78 dKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 78 DKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp GGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred hhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 99999 99999999998632 467888888744
No 233
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.11 E-value=1e-08 Score=102.55 Aligned_cols=136 Identities=17% Similarity=0.196 Sum_probs=80.8
Q ss_pred cccccHHHHHHHHHHHhcCC---------------------CCeEEEECCCCCCHHHHHHHHHHHhcCCcc--ccceeee
Q psy17903 46 DVIEQQEVVSVLKKCLSGAD---------------------LPHFLFYGPPGTGKTSTMIAACHQLFGDMY--RERILEL 102 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~~~---------------------~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~--~~~~~~~ 102 (355)
.+.|++.++..|.-.+-+|. -.|+||.|+||+|||.+|+.+++......+ ...+..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 46678877776655553331 015999999999999999999986432211 0111222
Q ss_pred cCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-------------CCcc
Q psy17903 103 NASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTR 169 (355)
Q Consensus 103 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~ 169 (355)
++... .... .. ..+......+.-..+++++++|||++.|+...|..|++.||+.. ..+.
T Consensus 531 gLTa~---~~~~---d~--~tG~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~r 602 (915)
T PTZ00111 531 GLTAS---IKFN---ES--DNGRAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETA 602 (915)
T ss_pred cccch---hhhc---cc--ccCcccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeE
Confidence 22110 0000 00 00000000000111356699999999999999999999998643 3577
Q ss_pred EEEEecCCc-------------cccccccCCee
Q psy17903 170 FCLICNYVS-------------CIIQPLTSRCS 189 (355)
Q Consensus 170 ~Il~~~~~~-------------~l~~~l~sr~~ 189 (355)
+|.++|... .+.++|.+|+.
T Consensus 603 VIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFD 635 (915)
T PTZ00111 603 ILASCNPINSRYNKNKAVIENINISPSLFTRFD 635 (915)
T ss_pred EEEEcCCcccccCcccCcccccCCChHHhhhhc
Confidence 888887531 25678889985
No 234
>PF13173 AAA_14: AAA domain
Probab=99.06 E-value=3e-09 Score=83.68 Aligned_cols=119 Identities=22% Similarity=0.307 Sum_probs=77.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH-HHHHHHHhhccCCCCCCCCCCCcEEEEEeCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD-KVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~-~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 146 (355)
.++|+||+|+|||++++.+++.+. ...+++.++..+......... ....+... ... +.++|||||+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~---~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~-~~~---------~~~~i~iDEi 70 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL---PPENILYINFDDPRDRRLADPDLLEYFLEL-IKP---------GKKYIFIDEI 70 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc---ccccceeeccCCHHHHHHhhhhhHHHHHHh-hcc---------CCcEEEEehh
Confidence 489999999999999999999875 223566777665433221110 11111111 100 2359999999
Q ss_pred CCCCHHHHHHHHHHhhhccCCccEEEEecCCc----cccccccCCeeeEEecCCCHHHH
Q psy17903 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVS----CIIQPLTSRCSKFRFKPLAENTM 201 (355)
Q Consensus 147 d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~----~l~~~l~sr~~~i~~~~~~~~~~ 201 (355)
+.+. +....+..+.+.. .+..+|+++.... .....+..|...+++.|++-.|.
T Consensus 71 q~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 71 QYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 9996 4555555666654 5667777776543 24466788888999999998774
No 235
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.06 E-value=4.5e-09 Score=95.27 Aligned_cols=91 Identities=10% Similarity=-0.079 Sum_probs=65.4
Q ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------ccccccccCCeeeEEecCCC
Q psy17903 136 PPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCIIQPLTSRCSKFRFKPLA 197 (355)
Q Consensus 136 ~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~l~~~l~sr~~~i~~~~~~ 197 (355)
++++++-++|+.....+.++.|+..+++.. .+.+||.++|.. .+..+++++||..+.++.+.
T Consensus 235 aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~vpY~l 314 (361)
T smart00763 235 ANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVKVPYCL 314 (361)
T ss_pred ccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEeCCCcC
Confidence 678899999999999999999999998632 124566666654 35689999999988876554
Q ss_pred -HHHHHHHHHHHHHHc---CCCCCHHHHHHHHH
Q psy17903 198 -ENTMLTRLQYICEQE---SVMCDFKALETLVE 226 (355)
Q Consensus 198 -~~~~~~~l~~~~~~~---~~~~~~~~~~~l~~ 226 (355)
.++-.++.++.+... +..+.+.+++.++.
T Consensus 315 ~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~ 347 (361)
T smart00763 315 RVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAAL 347 (361)
T ss_pred CHHHHHHHHHHHhccCcCcccccCchHHHHHHH
Confidence 455566777666543 44566666665554
No 236
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.06 E-value=3.4e-09 Score=95.51 Aligned_cols=188 Identities=13% Similarity=0.131 Sum_probs=104.1
Q ss_pred cHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHH--hcCCccccceeeecCCCccchHH-HHHHHHHHHHhh
Q psy17903 50 QQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQ--LFGDMYRERILELNASDDRGIQV-IRDKVKTFAQQT 124 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~-i~~~i~~~~~~~ 124 (355)
++..+++|.+.+... ....+.|+|++|+|||++|..+++. ....+ + .++.++......... ....+..+....
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f-~-~v~wv~~~~~~~~~~~~~~i~~~l~~~~ 78 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRF-D-GVIWVSLSKNPSLEQLLEQILRQLGEPD 78 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCC-T-EEEEEEEES-SCCHHHHHHHHHHHTCC-
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccccc-c-cccccccccccccccccccccccccccc
Confidence 356778888888773 3333999999999999999999988 33322 2 222333332222222 222222221110
Q ss_pred ccCCCCCC----------CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeeeEEec
Q psy17903 125 ASGFNQDG----------KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFK 194 (355)
Q Consensus 125 ~~~~~~~~----------~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~ 194 (355)
........ .-...+-+||+|+++... ..+.+...+.....++.+|+||.... +...+......+++.
T Consensus 79 ~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~-v~~~~~~~~~~~~l~ 155 (287)
T PF00931_consen 79 SSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRS-VAGSLGGTDKVIELE 155 (287)
T ss_dssp STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGG-GGTTHHSCEEEEECS
T ss_pred cccccccccccccccchhhhccccceeeeeeecccc--cccccccccccccccccccccccccc-ccccccccccccccc
Confidence 00000000 000134599999987653 44455555554555678888886543 333333336789999
Q ss_pred CCCHHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy17903 195 PLAENTMLTRLQYICEQES---VMCDFKALETLVETSGGDMRRAITCLQSC 242 (355)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 242 (355)
+++.++..+.+.+.+.... ..-.++..+.|++.|+|.+-.+.-....+
T Consensus 156 ~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l 206 (287)
T PF00931_consen 156 PLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYL 206 (287)
T ss_dssp S--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999998876544 12224567889999999988776665544
No 237
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.05 E-value=4.1e-10 Score=89.91 Aligned_cols=107 Identities=15% Similarity=0.168 Sum_probs=71.7
Q ss_pred cccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhc
Q psy17903 48 IEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA 125 (355)
Q Consensus 48 vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~ 125 (355)
||....++.+.+.++.- ...+++|+|++|+||+++|+.++..... ....++.+++.... .+.+.. .
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~--~~~~~~~~~~~~~~-----~~~l~~----a- 68 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGR--ANGPFIVIDCASLP-----AELLEQ----A- 68 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTT--CCS-CCCCCHHCTC-----HHHHHH----C-
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCc--cCCCeEEechhhCc-----HHHHHH----c-
Confidence 46777777777766542 2234999999999999999999987543 23345555554422 112222 1
Q ss_pred cCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc-cCCccEEEEecCC
Q psy17903 126 SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-TKSTRFCLICNYV 177 (355)
Q Consensus 126 ~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~ 177 (355)
...+++|+|+|.|+.+.|..|..+++.. ..++++|+++...
T Consensus 69 -----------~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 69 -----------KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQD 110 (138)
T ss_dssp -----------TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-
T ss_pred -----------CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence 1238999999999999999999999864 5678899888743
No 238
>KOG0741|consensus
Probab=99.04 E-value=9.2e-10 Score=101.88 Aligned_cols=177 Identities=18% Similarity=0.218 Sum_probs=108.5
Q ss_pred CCCc--ccccHHHHHHHHH-H----------HhcCCCCe---EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCC
Q psy17903 43 TIDD--VIEQQEVVSVLKK-C----------LSGADLPH---FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (355)
Q Consensus 43 ~~~~--~vg~~~~~~~l~~-~----------l~~~~~~~---~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 106 (355)
.|++ +-|-+.....+.+ + +++-..+| +|+|||||||||.+|+.+.+-++...++ -+|+++
T Consensus 217 ~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePK----IVNGPe 292 (744)
T KOG0741|consen 217 NFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPK----IVNGPE 292 (744)
T ss_pred ChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCc----ccCcHH
Confidence 3554 4466655544432 2 23444556 9999999999999999999999764332 123222
Q ss_pred ------ccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-------------HHHHHHHHHhhhc--c
Q psy17903 107 ------DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-------------AAQAALRRTMEKE--T 165 (355)
Q Consensus 107 ------~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-------------~~~~~Ll~~le~~--~ 165 (355)
-.+...+|..+......--. .| ..++-.|||+||+|.+.. ...|.|+.-|+-. -
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~----~g-~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL 367 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRR----LG-ANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL 367 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHh----hC-ccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh
Confidence 11223444444433221100 00 002457999999998854 3467788777632 3
Q ss_pred CCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHH---HcCCCCCHHHHHHHHHHc
Q psy17903 166 KSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICE---QESVMCDFKALETLVETS 228 (355)
Q Consensus 166 ~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~l~~~~ 228 (355)
.+..+|..||+.+-++++|.+.++ .+++.-|++.-..++++-+.+ ..+.--++-.++.|+..+
T Consensus 368 NNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lT 436 (744)
T KOG0741|consen 368 NNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALT 436 (744)
T ss_pred hcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHh
Confidence 467788889999999999998877 577778888766666554443 233322334466666665
No 239
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=99.02 E-value=7.3e-09 Score=75.95 Aligned_cols=83 Identities=37% Similarity=0.589 Sum_probs=72.5
Q ss_pred ChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHH
Q psy17903 264 PNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQI 340 (355)
Q Consensus 264 ~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l 340 (355)
+++.+.++++. +++..++..+++++..|+++.+++..+.+.+... .+++..+.+++..+++++++|..|.++.+||
T Consensus 4 ~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~~-~~~~~~k~~i~~~la~~e~rl~~G~~e~lQl 82 (89)
T PF08542_consen 4 PPEVIEEILESCLNGDFKEARKKLYELLVEGYSASDILKQLHEVLVES-DIPDSQKAEILKILAEIEYRLSDGASEILQL 82 (89)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHTS-TSSHHHHHHHHHHHHHHHHHHHTTC-HHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHhHHHHCCCCHHHHH
Confidence 45566666665 8999999999999999999999999999999988 8899999999999999999999999999999
Q ss_pred HHHHHHH
Q psy17903 341 LDLGSIV 347 (355)
Q Consensus 341 ~~~~~~~ 347 (355)
+.|++++
T Consensus 83 ~alva~~ 89 (89)
T PF08542_consen 83 EALVAAF 89 (89)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 9999875
No 240
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.01 E-value=2.1e-08 Score=91.38 Aligned_cols=165 Identities=13% Similarity=0.030 Sum_probs=100.1
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccch---HHHHHH----
Q psy17903 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI---QVIRDK---- 116 (355)
Q Consensus 44 ~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~---~~i~~~---- 116 (355)
|..++|++.....|--..-......+||.|+.|+||||++++++.-|.....-. =..++|.-.... +.++..
T Consensus 16 f~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~-gc~f~cdP~~P~~~c~~c~~k~~e~ 94 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVI-GCPFNCDPDDPEEMCDECRAKGDEL 94 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceec-CCCCCCCCCChhhhhHHHHhhcccc
Confidence 677999999887776554444555699999999999999999999884311000 000111100000 001100
Q ss_pred -----------------------------HHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc---
Q psy17903 117 -----------------------------VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE--- 164 (355)
Q Consensus 117 -----------------------------i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~--- 164 (355)
+......+...+.++--..+++.|+.|||+..|....++.|+..++++
T Consensus 95 ~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG~n~ 174 (423)
T COG1239 95 EWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEGVND 174 (423)
T ss_pred ccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhCCce
Confidence 000111111111111122368889999999999999999999999863
Q ss_pred ----------cCCccEEEEecCC-ccccccccCCee-eEEecCCC-HHHHHHHHHHHH
Q psy17903 165 ----------TKSTRFCLICNYV-SCIIQPLTSRCS-KFRFKPLA-ENTMLTRLQYIC 209 (355)
Q Consensus 165 ----------~~~~~~Il~~~~~-~~l~~~l~sr~~-~i~~~~~~-~~~~~~~l~~~~ 209 (355)
+.++++|.+.|.. ..+.++|+.|+. .+...++. .++..+++.+..
T Consensus 175 vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 175 VEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred eeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 3456677777753 568899999965 66665554 444455554443
No 241
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.97 E-value=2.4e-08 Score=85.02 Aligned_cols=200 Identities=19% Similarity=0.203 Sum_probs=126.2
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhh-----
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQT----- 124 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~----- 124 (355)
+.+.+..+...+..+. .-+.++|+-|+|||++.+++...+.++.. ..+.++.........+...+..+...+
T Consensus 36 h~e~l~~l~~~i~d~q-g~~~vtGevGsGKTv~~Ral~~s~~~d~~--~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~ 112 (269)
T COG3267 36 HNEALLMLHAAIADGQ-GILAVTGEVGSGKTVLRRALLASLNEDQV--AVVVIDKPTLSDATLLEAIVADLESQPKVNVN 112 (269)
T ss_pred hhHHHHHHHHHHhcCC-ceEEEEecCCCchhHHHHHHHHhcCCCce--EEEEecCcchhHHHHHHHHHHHhccCccchhH
Confidence 5566777777777664 13899999999999999987777765432 224454443222221111111111100
Q ss_pred ----------ccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhh---hccCCccEEEEecCC-cc-----cccccc
Q psy17903 125 ----------ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTME---KETKSTRFCLICNYV-SC-----IIQPLT 185 (355)
Q Consensus 125 ----------~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le---~~~~~~~~Il~~~~~-~~-----l~~~l~ 185 (355)
........ ...++++||++.+..+....|+.+.+ +.+....+++++... .. ....+.
T Consensus 113 ~~~e~~~~~L~al~~~g~----r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~ 188 (269)
T COG3267 113 AVLEQIDRELAALVKKGK----RPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELE 188 (269)
T ss_pred HHHHHHHHHHHHHHHhCC----CCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhh
Confidence 00000111 11599999999999988877766543 344444556665422 11 234567
Q ss_pred CCeee-EEecCCCHHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHcCCCHHHHHHHHHHHHHh---hCCCCCCHHHH
Q psy17903 186 SRCSK-FRFKPLAENTMLTRLQYICEQESVM---CDFKALETLVETSGGDMRRAITCLQSCARL---KGGEGIVNEDV 256 (355)
Q Consensus 186 sr~~~-i~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~---~~~~~It~~~v 256 (355)
.|+.. ++++|++.++...+++.+++..+.. ++++++..+...+.|-+|.+-+.+..+-.. +++..|+...+
T Consensus 189 ~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~Al~~a~~a~~~~v~~a~~ 266 (269)
T COG3267 189 QRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATLALDAAYSAGEDGVSEAEI 266 (269)
T ss_pred heEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHHHHHHHHHcCCCccchhhc
Confidence 88886 9999999999999999999876543 578999999999999888776666544222 25556666544
No 242
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.95 E-value=2.7e-08 Score=94.97 Aligned_cols=217 Identities=18% Similarity=0.155 Sum_probs=121.1
Q ss_pred CCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC------CCc-------c
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA------SDD-------R 108 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~------~~~-------~ 108 (355)
.+|.++.|+..+++.+.-.+..+ .+++|.||+|+|||++++.++..+...... ..++... ... .
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~G--~~llliG~~GsGKTtLak~L~gllpp~~g~-e~le~~~i~s~~g~~~~~~~~~~r 264 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAGG--HNLLLIGPPGTGKTMLASRINGLLPDLSNE-EALESAAILSLVNAESVQKQWRQR 264 (506)
T ss_pred cCeEEEECcHHHHhhhheeccCC--cEEEEECCCCCcHHHHHHHHhccCCCCCCc-EEEecchhhhhhccccccCCcCCC
Confidence 37888999998888876665544 469999999999999999998876421110 1111111 000 0
Q ss_pred chHHHHHHHHHHHHhhc-cCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCccEEEEe
Q psy17903 109 GIQVIRDKVKTFAQQTA-SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-------------TKSTRFCLIC 174 (355)
Q Consensus 109 ~~~~i~~~i~~~~~~~~-~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~~Il~~ 174 (355)
....-.......+-.+. .......-..+++.++|+||++.+....++.|++.||+. +.++.+|.++
T Consensus 265 Pfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~ 344 (506)
T PRK09862 265 PFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAM 344 (506)
T ss_pred CccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEee
Confidence 00000000000000000 000000001146679999999999999999999999763 3456778777
Q ss_pred cCCc---------------------cccccccCCee-eEEecCCCHHH-------------HHHHHH-HHHH--H----c
Q psy17903 175 NYVS---------------------CIIQPLTSRCS-KFRFKPLAENT-------------MLTRLQ-YICE--Q----E 212 (355)
Q Consensus 175 ~~~~---------------------~l~~~l~sr~~-~i~~~~~~~~~-------------~~~~l~-~~~~--~----~ 212 (355)
|... ++..++.+|+. .+.+++++.++ +.+.+. .+-. . .
T Consensus 345 NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~q~~r~~~~ 424 (506)
T PRK09862 345 NPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARERQFKRQNKL 424 (506)
T ss_pred cCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHHHHHHHHHH
Confidence 7531 35568888887 57777664322 221111 0000 0 0
Q ss_pred C-----------CCCCHHHHHHHH---HHcCCCHHHHHHHHHHH---HHhhCCCCCCHHHHHHHhC
Q psy17903 213 S-----------VMCDFKALETLV---ETSGGDMRRAITCLQSC---ARLKGGEGIVNEDVLEVTG 261 (355)
Q Consensus 213 ~-----------~~~~~~~~~~l~---~~~~g~~r~~~~~l~~~---~~~~~~~~It~~~v~~~~~ 261 (355)
+ +.+++++.+.+. ...+-+.|.....++-+ +.+.+...|+.+++.+++.
T Consensus 425 n~~l~~~~l~~~~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~~~hv~eAl~ 490 (506)
T PRK09862 425 NAWLDSPEIRQFCKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIITRQHLQEAVS 490 (506)
T ss_pred hcccCHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 1 233444433332 23344667666666544 3344778899999988775
No 243
>KOG2170|consensus
Probab=98.95 E-value=2.2e-08 Score=86.91 Aligned_cols=125 Identities=17% Similarity=0.246 Sum_probs=84.3
Q ss_pred ccccHHHHHHHHHHH----hcCCCCe---EEEECCCCCCHHHHHHHHHHHhcCCcccccee-----eecCCCccchHHHH
Q psy17903 47 VIEQQEVVSVLKKCL----SGADLPH---FLFYGPPGTGKTSTMIAACHQLFGDMYRERIL-----ELNASDDRGIQVIR 114 (355)
Q Consensus 47 ~vg~~~~~~~l~~~l----~~~~~~~---~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~-----~~~~~~~~~~~~i~ 114 (355)
+.||.-+.+.+.+.+ .+..... +-|+|++||||..+++.+++.+.......+++ ..+.+....++..+
T Consensus 84 lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie~Yk 163 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIEDYK 163 (344)
T ss_pred hhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHHHHH
Confidence 557665555554444 4443222 77999999999999999999998655444443 34445555555555
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-------CCccEEEEecCCcc
Q psy17903 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------KSTRFCLICNYVSC 179 (355)
Q Consensus 115 ~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------~~~~~Il~~~~~~~ 179 (355)
..+........... .+.+.|+||+|.|.++..+.|...|+.++ ...+|||.+|....
T Consensus 164 ~eL~~~v~~~v~~C--------~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~ 227 (344)
T KOG2170|consen 164 EELKNRVRGTVQAC--------QRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGS 227 (344)
T ss_pred HHHHHHHHHHHHhc--------CCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcch
Confidence 55554443333221 34599999999999999999988887543 35789999986543
No 244
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.94 E-value=3.4e-10 Score=86.74 Aligned_cols=89 Identities=26% Similarity=0.236 Sum_probs=47.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH-HHHHHHhhccCCCCCCCCCCCcEEEEEeCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK-VKTFAQQTASGFNQDGKPCPPFKIVILDEA 146 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-i~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 146 (355)
|+||.|+||+|||++|+++++.+..+ +..+.+.......++... +... ........ .|.. -..++++||+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~-----f~RIq~tpdllPsDi~G~~v~~~-~~~~f~~~-~GPi--f~~ill~DEi 71 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLS-----FKRIQFTPDLLPSDILGFPVYDQ-ETGEFEFR-PGPI--FTNILLADEI 71 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT-------EEEEE--TT--HHHHHEEEEEET-TTTEEEEE-E-TT---SSEEEEETG
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCc-----eeEEEecCCCCcccceeeeeecc-CCCeeEee-cChh--hhceeeeccc
Confidence 68999999999999999999998543 333333221112211110 0000 00000000 0000 1239999999
Q ss_pred CCCCHHHHHHHHHHhhhcc
Q psy17903 147 DSMTHAAQAALRRTMEKET 165 (355)
Q Consensus 147 d~l~~~~~~~Ll~~le~~~ 165 (355)
.+.++..|.+|++.|++..
T Consensus 72 NrappktQsAlLeam~Er~ 90 (131)
T PF07726_consen 72 NRAPPKTQSALLEAMEERQ 90 (131)
T ss_dssp GGS-HHHHHHHHHHHHHSE
T ss_pred ccCCHHHHHHHHHHHHcCe
Confidence 9999999999999998753
No 245
>PRK12377 putative replication protein; Provisional
Probab=98.93 E-value=5.2e-09 Score=91.23 Aligned_cols=129 Identities=18% Similarity=0.261 Sum_probs=73.4
Q ss_pred ccCCCCCCccc----ccHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchH
Q psy17903 38 KYRPKTIDDVI----EQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQ 111 (355)
Q Consensus 38 k~~p~~~~~~v----g~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 111 (355)
.+...+|+.+. |+..++.....++.. ....+++|+||+|+|||++|.++++.+..... .++.++..+. ..
T Consensus 67 ~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~--~v~~i~~~~l--~~ 142 (248)
T PRK12377 67 LHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGR--SVIVVTVPDV--MS 142 (248)
T ss_pred ccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--CeEEEEHHHH--HH
Confidence 44555677775 333455555544432 12345999999999999999999999865433 2333333221 11
Q ss_pred HHHHHHHHH--HHhhccCCCCCCCCCCCcEEEEEeCC--CCCCHHHHHHHHHHhhhccC-CccEEEEecCC
Q psy17903 112 VIRDKVKTF--AQQTASGFNQDGKPCPPFKIVILDEA--DSMTHAAQAALRRTMEKETK-STRFCLICNYV 177 (355)
Q Consensus 112 ~i~~~i~~~--~~~~~~~~~~~~~~~~~~~vliiDe~--d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~ 177 (355)
.+....... ........ ....+|||||+ +..+...++.|..+++..-. ....|++||-.
T Consensus 143 ~l~~~~~~~~~~~~~l~~l-------~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 143 RLHESYDNGQSGEKFLQEL-------CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHHhccchHHHHHHHh-------cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 111111000 00000000 13349999999 55567778889999886543 34567778743
No 246
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.9e-08 Score=87.95 Aligned_cols=187 Identities=19% Similarity=0.215 Sum_probs=109.9
Q ss_pred cccccHHHHHHHH--------HHHhc---C----CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccch
Q psy17903 46 DVIEQQEVVSVLK--------KCLSG---A----DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (355)
Q Consensus 46 ~~vg~~~~~~~l~--------~~l~~---~----~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 110 (355)
-++||+.+++.|. +.-.. . ..+++|+.||+|+|||.+|+.+++.+ +.+|.-.|+...+..
T Consensus 62 YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L-----nVPFaiADATtLTEA 136 (408)
T COG1219 62 YVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL-----NVPFAIADATTLTEA 136 (408)
T ss_pred heecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh-----CCCeeeccccchhhc
Confidence 3679998775442 22111 1 12459999999999999999999998 445555555432111
Q ss_pred ----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHhhhc-----c--
Q psy17903 111 ----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTMEKE-----T-- 165 (355)
Q Consensus 111 ----~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~-----~-- 165 (355)
+++.+.+..+.+...... ..+.+++|+|||+|.++. ..|++|++++|-. |
T Consensus 137 GYVGEDVENillkLlqaadydV-----~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqG 211 (408)
T COG1219 137 GYVGEDVENILLKLLQAADYDV-----ERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQG 211 (408)
T ss_pred cccchhHHHHHHHHHHHcccCH-----HHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCC
Confidence 233333333332221110 012566999999999853 4689999999841 1
Q ss_pred --------------CCccEEEEec---------------------CC----c-------------------cccccccCC
Q psy17903 166 --------------KSTRFCLICN---------------------YV----S-------------------CIIQPLTSR 187 (355)
Q Consensus 166 --------------~~~~~Il~~~---------------------~~----~-------------------~l~~~l~sr 187 (355)
.+..||+.+. .. . -++|.+.-|
T Consensus 212 GRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGR 291 (408)
T COG1219 212 GRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGR 291 (408)
T ss_pred CCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcc
Confidence 1233333220 00 0 024555566
Q ss_pred ee-eEEecCCCHHHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHHc---CCCHHHHHHHHHHH
Q psy17903 188 CS-KFRFKPLAENTMLTRLQ-----------YICEQESV--MCDFKALETLVETS---GGDMRRAITCLQSC 242 (355)
Q Consensus 188 ~~-~i~~~~~~~~~~~~~l~-----------~~~~~~~~--~~~~~~~~~l~~~~---~g~~r~~~~~l~~~ 242 (355)
.. +..+.+++.+++..+|. ..+...++ .++++++..+++.+ .-..|-+...++.+
T Consensus 292 lPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~ 363 (408)
T COG1219 292 LPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEEL 363 (408)
T ss_pred cceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 55 45688888888877753 23333444 57899999998765 33445555555544
No 247
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.91 E-value=1.3e-08 Score=88.11 Aligned_cols=192 Identities=17% Similarity=0.152 Sum_probs=116.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHh-cCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCC---CCCCCCCCcEEEEEe
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL-FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFN---QDGKPCPPFKIVILD 144 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~---~~~~~~~~~~vliiD 144 (355)
+|+.||.|.||+.+|+.+...- ....+...++++||....+...+...+... ...+.+.. ..--..+++.++|+|
T Consensus 211 ~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghv-kgaftga~~~r~gllrsadggmlfld 289 (531)
T COG4650 211 ILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHV-KGAFTGARESREGLLRSADGGMLFLD 289 (531)
T ss_pred eEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhh-ccccccchhhhhhhhccCCCceEehH
Confidence 9999999999999999876532 234556789999999877765554433321 11111110 011122466799999
Q ss_pred CCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecC-------CccccccccCCeeeEEecCCCHHHHH----
Q psy17903 145 EADSMTHAAQAALRRTMEKET-----------KSTRFCLICNY-------VSCIIQPLTSRCSKFRFKPLAENTML---- 202 (355)
Q Consensus 145 e~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~-------~~~l~~~l~sr~~~i~~~~~~~~~~~---- 202 (355)
|+..|..+.|..|++.+|+.. ....+|..|.. ...+-+.+-.|...+.|.-|...+..
T Consensus 290 eigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~arinlwtf~lpgl~qr~edie 369 (531)
T COG4650 290 EIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARINLWTFTLPGLRQRQEDIE 369 (531)
T ss_pred hhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhhheeeeeccccccCccccC
Confidence 999999999999999998742 12233332211 01122333344444444433321111
Q ss_pred ----HHHHHHHHHc--CCCCCHHHHHHHHH-------HcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhC
Q psy17903 203 ----TRLQYICEQE--SVMCDFKALETLVE-------TSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261 (355)
Q Consensus 203 ----~~l~~~~~~~--~~~~~~~~~~~l~~-------~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~ 261 (355)
--+.+.+... .+.+..++-..-.. ...||.|.+-..+-+++.++.++.||.+.|++-+.
T Consensus 370 pnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatlad~grit~~~ve~ei~ 441 (531)
T COG4650 370 PNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLADSGRITLDVVEDEIN 441 (531)
T ss_pred CCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHhcCCceeHHHHHHHHH
Confidence 1123333333 34555555444222 24699999999999999999999999999886554
No 248
>PRK08116 hypothetical protein; Validated
Probab=98.88 E-value=7.8e-09 Score=91.69 Aligned_cols=147 Identities=17% Similarity=0.240 Sum_probs=85.0
Q ss_pred cccCCCCCCcccccH---HHHHHHHHHHhc----C-CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc
Q psy17903 37 EKYRPKTIDDVIEQQ---EVVSVLKKCLSG----A-DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (355)
Q Consensus 37 ~k~~p~~~~~~vg~~---~~~~~l~~~l~~----~-~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 108 (355)
++|+-.+|+.+...+ .++....+++++ . ....++|+|++|+|||++|.++++.+.... ..++.++..+.
T Consensus 77 ~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~--~~v~~~~~~~l- 153 (268)
T PRK08116 77 EKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKG--VPVIFVNFPQL- 153 (268)
T ss_pred HHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEHHHH-
Confidence 455556777765322 344444444432 1 112399999999999999999999986542 24445443321
Q ss_pred chHHHHHHHH--------HHHHhhccCCCCCCCCCCCcEEEEEeCC--CCCCHHHHHHHHHHhhhc-cCCccEEEEecCC
Q psy17903 109 GIQVIRDKVK--------TFAQQTASGFNQDGKPCPPFKIVILDEA--DSMTHAAQAALRRTMEKE-TKSTRFCLICNYV 177 (355)
Q Consensus 109 ~~~~i~~~i~--------~~~~~~~~~~~~~~~~~~~~~vliiDe~--d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~ 177 (355)
...+...+. .+... . .+..+|||||+ +..+...+..|..+++.. .....+|++||..
T Consensus 154 -l~~i~~~~~~~~~~~~~~~~~~-l----------~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 154 -LNRIKSTYKSSGKEDENEIIRS-L----------VNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred -HHHHHHHHhccccccHHHHHHH-h----------cCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 111111100 00000 0 02349999999 556666778888888753 3345677788854
Q ss_pred c-c----ccccccCC----eeeEEecCCCH
Q psy17903 178 S-C----IIQPLTSR----CSKFRFKPLAE 198 (355)
Q Consensus 178 ~-~----l~~~l~sr----~~~i~~~~~~~ 198 (355)
. . +...+.+| |..|.|..++.
T Consensus 222 ~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 222 LEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred HHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 2 2 33456666 66788876653
No 249
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=8.2e-08 Score=88.87 Aligned_cols=119 Identities=24% Similarity=0.328 Sum_probs=72.2
Q ss_pred CCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeec------CCCccc--hHH
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN------ASDDRG--IQV 112 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~------~~~~~~--~~~ 112 (355)
..+|.|++||+.+++.+.-...+| +|++++||||||||++|+.+..-+..- .....++.+ +....+ ...
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAAGg--HnLl~~GpPGtGKTmla~Rl~~lLPpl-s~~E~lE~s~I~s~~g~~~~~~~~~~ 251 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAAGG--HNLLLVGPPGTGKTMLASRLPGLLPPL-SIPEALEVSAIHSLAGDLHEGCPLKI 251 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHhcC--CcEEEecCCCCchHHhhhhhcccCCCC-ChHHHHHHHHHhhhcccccccCccce
Confidence 347999999999999999888877 369999999999999999988765320 000111111 000000 000
Q ss_pred HHH--------HHHHHHHhhccCCCCCCC-CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc
Q psy17903 113 IRD--------KVKTFAQQTASGFNQDGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKE 164 (355)
Q Consensus 113 i~~--------~i~~~~~~~~~~~~~~~~-~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~ 164 (355)
.+. ....+...+ +....|. ..+..+|+|+||+..+.....+.|+.-||+.
T Consensus 252 ~rPFr~PHHsaS~~aLvGGG--~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g 310 (490)
T COG0606 252 HRPFRAPHHSASLAALVGGG--GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENG 310 (490)
T ss_pred eCCccCCCccchHHHHhCCC--CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccC
Confidence 000 000000000 0000000 0157789999999999999999999999864
No 250
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=8e-08 Score=84.73 Aligned_cols=107 Identities=22% Similarity=0.228 Sum_probs=74.4
Q ss_pred CcEEEEEeCCCCCCH------------HHHHHHHHHhhhcc----------CCccEEEEe----cCCccccccccCCee-
Q psy17903 137 PFKIVILDEADSMTH------------AAQAALRRTMEKET----------KSTRFCLIC----NYVSCIIQPLTSRCS- 189 (355)
Q Consensus 137 ~~~vliiDe~d~l~~------------~~~~~Ll~~le~~~----------~~~~~Il~~----~~~~~l~~~l~sr~~- 189 (355)
..++|||||+|.+.. +.|..|+.++|-.. .+..||.++ ..|+.++|.|.-|+.
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPI 329 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPI 329 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCce
Confidence 346999999998843 34667888877421 233444433 246779999999988
Q ss_pred eEEecCCCHHHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHHc---C-----CCHHHHHHHHHHHH
Q psy17903 190 KFRFKPLAENTMLTRLQY-----------ICEQESV--MCDFKALETLVETS---G-----GDMRRAITCLQSCA 243 (355)
Q Consensus 190 ~i~~~~~~~~~~~~~l~~-----------~~~~~~~--~~~~~~~~~l~~~~---~-----g~~r~~~~~l~~~~ 243 (355)
.|++.+++.+++..+|.. .++.+++ .++++++..|++.+ + =..|++...++++-
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlL 404 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLL 404 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHH
Confidence 799999999999887632 2333454 57899999998764 2 23577777777664
No 251
>KOG1051|consensus
Probab=98.85 E-value=2e-08 Score=100.24 Aligned_cols=118 Identities=24% Similarity=0.418 Sum_probs=86.3
Q ss_pred CcccccHHHHHHHHHHHhcC-----CC-Ce--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc-------
Q psy17903 45 DDVIEQQEVVSVLKKCLSGA-----DL-PH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG------- 109 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~-----~~-~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------- 109 (355)
+.++||++++..+...+... +. +. ++|.||.|+|||-+|++++..+++... .++.+|.+....
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~--~~IriDmse~~evskligs 639 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEE--NFIRLDMSEFQEVSKLIGS 639 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCcc--ceEEechhhhhhhhhccCC
Confidence 46889999999999988542 21 22 999999999999999999999987644 677777765211
Q ss_pred ------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEE
Q psy17903 110 ------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCL 172 (355)
Q Consensus 110 ------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il 172 (355)
....- .+.+.... .++.||++||+|.-.++.++.|+..++++. .+++||+
T Consensus 640 p~gyvG~e~gg-~Lteavrr------------rP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IM 706 (898)
T KOG1051|consen 640 PPGYVGKEEGG-QLTEAVKR------------RPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIM 706 (898)
T ss_pred CcccccchhHH-HHHHHHhc------------CCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEE
Confidence 11111 11111111 156699999999999999999999999753 5789999
Q ss_pred EecCC
Q psy17903 173 ICNYV 177 (355)
Q Consensus 173 ~~~~~ 177 (355)
|+|.-
T Consensus 707 Tsn~~ 711 (898)
T KOG1051|consen 707 TSNVG 711 (898)
T ss_pred ecccc
Confidence 98854
No 252
>PRK08181 transposase; Validated
Probab=98.83 E-value=1.9e-08 Score=88.75 Aligned_cols=108 Identities=20% Similarity=0.310 Sum_probs=61.3
Q ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHH-hhccCCCCCCCCC
Q psy17903 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ-QTASGFNQDGKPC 135 (355)
Q Consensus 57 l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~-~~~~~~~~~~~~~ 135 (355)
...|+..+ .+++|+||+|+|||+++.++++++....+ .++.++..+ +.+.+..... ....... ...
T Consensus 99 ~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~--~v~f~~~~~------L~~~l~~a~~~~~~~~~l---~~l 165 (269)
T PRK08181 99 GDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGW--RVLFTRTTD------LVQKLQVARRELQLESAI---AKL 165 (269)
T ss_pred HHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCC--ceeeeeHHH------HHHHHHHHHhCCcHHHHH---HHH
Confidence 33577644 46999999999999999999998754333 333333321 1111111000 0000000 000
Q ss_pred CCcEEEEEeCCCCCCH--HHHHHHHHHhhhccCCccEEEEecCC
Q psy17903 136 PPFKIVILDEADSMTH--AAQAALRRTMEKETKSTRFCLICNYV 177 (355)
Q Consensus 136 ~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~~~ 177 (355)
....+|||||++.... ..+..|..+++.......+|+++|.+
T Consensus 166 ~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 166 DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 0234999999987754 44567888887544345677788753
No 253
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.83 E-value=2.2e-08 Score=87.06 Aligned_cols=127 Identities=17% Similarity=0.319 Sum_probs=74.3
Q ss_pred ccccCCCCCCcccc----cHHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc
Q psy17903 36 VEKYRPKTIDDVIE----QQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (355)
Q Consensus 36 ~~k~~p~~~~~~vg----~~~~~~~l~~~l~~~~--~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 109 (355)
.+.|++.+|+.+.. +..++..+.+++++-. ..+++|+|++|+|||+++.++++.+..... .++.++..+.
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~--~v~~it~~~l-- 138 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGK--SVLIITVADI-- 138 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCC--eEEEEEHHHH--
Confidence 45677778988763 3345666666665422 235999999999999999999999865332 3344433221
Q ss_pred hHHHHHHHH-------HHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHhhhc-cCCccEEEEecCC
Q psy17903 110 IQVIRDKVK-------TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--AQAALRRTMEKE-TKSTRFCLICNYV 177 (355)
Q Consensus 110 ~~~i~~~i~-------~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--~~~~Ll~~le~~-~~~~~~Il~~~~~ 177 (355)
...+..... ..... . ....+|||||++..... ....|..+++.. ......|++||-.
T Consensus 139 ~~~l~~~~~~~~~~~~~~l~~-l----------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 139 MSAMKDTFSNSETSEEQLLND-L----------SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHHHHhhccccHHHHHHH-h----------ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 111111100 00000 0 02349999999877533 344566777643 2345567788743
No 254
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.82 E-value=6.6e-08 Score=76.70 Aligned_cols=95 Identities=27% Similarity=0.292 Sum_probs=58.4
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc--------------------hHHHHHHHHHHHHhhcc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG--------------------IQVIRDKVKTFAQQTAS 126 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--------------------~~~i~~~i~~~~~~~~~ 126 (355)
.+++|+||+|+|||++++.++..+.... ..++.+++..... ..... .....+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-- 77 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG--GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLR-LALALARKL-- 77 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC--CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHH-HHHHHHHhc--
Confidence 4599999999999999999999986543 2345555543211 11122 112222111
Q ss_pred CCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHH--------HhhhccCCccEEEEecC
Q psy17903 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRR--------TMEKETKSTRFCLICNY 176 (355)
Q Consensus 127 ~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~--------~le~~~~~~~~Il~~~~ 176 (355)
...+|+|||++.+.......... ..........+|+++|.
T Consensus 78 ----------~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 78 ----------KPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred ----------CCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCC
Confidence 11499999999998766554432 22334556777777775
No 255
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.82 E-value=2e-07 Score=90.93 Aligned_cols=205 Identities=14% Similarity=0.100 Sum_probs=123.6
Q ss_pred cHHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceee--ecCCCc--cchHHHHHHHHHHHHhh
Q psy17903 50 QQEVVSVLKKCLSGA-DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILE--LNASDD--RGIQVIRDKVKTFAQQT 124 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~-~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~--~~~~~~--~~~~~i~~~i~~~~~~~ 124 (355)
|++++..|.-..-+. ....++|.|+.|++|+++++.++.-+... .+++. .+.++. .+--++...+.. +
T Consensus 8 ~~~~~~Al~l~av~p~~~gGv~i~g~~G~~ks~~~r~l~~llp~~---~p~r~~p~~~t~~~L~Gg~Dl~~~l~~----g 80 (584)
T PRK13406 8 WADAALAAALLAVDPAGLGGVVLRARAGPVRDRWLAALRALLPAG---TPLRRLPPGIADDRLLGGLDLAATLRA----G 80 (584)
T ss_pred HHHHHHHHHHhCcCccccceEEEEcCCCcHHHHHHHHHHHhcCCC---CCcccCCCCCcHHHccCCchHHhHhhc----C
Confidence 444444444333333 44569999999999999999999887441 12332 222221 111122222221 1
Q ss_pred ccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCC-----------ccEEEEecC-----CccccccccCCe
Q psy17903 125 ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKS-----------TRFCLICNY-----VSCIIQPLTSRC 188 (355)
Q Consensus 125 ~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~-----------~~~Il~~~~-----~~~l~~~l~sr~ 188 (355)
.......--..+++.||||||+..+.+..++.|+..|++.... ..|++++.+ ..++.+++..|+
T Consensus 81 ~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf 160 (584)
T PRK13406 81 RPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRL 160 (584)
T ss_pred CcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhhe
Confidence 1000011011146679999999999999999999999875321 123333322 234778899998
Q ss_pred e-eEEecCCCHHHHH-------HHHHHHHHHcCCCCCHHHHHHHHHHc---CC-CHHHHHHHHHHHH---HhhCCCCCCH
Q psy17903 189 S-KFRFKPLAENTML-------TRLQYICEQESVMCDFKALETLVETS---GG-DMRRAITCLQSCA---RLKGGEGIVN 253 (355)
Q Consensus 189 ~-~i~~~~~~~~~~~-------~~l~~~~~~~~~~~~~~~~~~l~~~~---~g-~~r~~~~~l~~~~---~~~~~~~It~ 253 (355)
. .+.+..++..+.. ++...+..-.++.++++.++++++.+ +- +.|..+..++.+. .+.+...|+.
T Consensus 161 ~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~Gr~~V~~ 240 (584)
T PRK13406 161 AFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALAGRTAVEE 240 (584)
T ss_pred EEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHcCCCCCCH
Confidence 7 6788877765432 23322222247889999999887654 31 6677666665443 3447889999
Q ss_pred HHHHHHhC
Q psy17903 254 EDVLEVTG 261 (355)
Q Consensus 254 ~~v~~~~~ 261 (355)
+||.+++.
T Consensus 241 ~dv~~Aa~ 248 (584)
T PRK13406 241 EDLALAAR 248 (584)
T ss_pred HHHHHHHH
Confidence 99998763
No 256
>PRK06526 transposase; Provisional
Probab=98.81 E-value=1.2e-08 Score=89.55 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=66.3
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCC
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 146 (355)
.+++|+||+|+|||+++.+++.++...... +...+.. .+.+.+............ -....+..+|||||+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~--v~f~t~~------~l~~~l~~~~~~~~~~~~--l~~l~~~dlLIIDD~ 168 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHR--VLFATAA------QWVARLAAAHHAGRLQAE--LVKLGRYPLLIVDEV 168 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCc--hhhhhHH------HHHHHHHHHHhcCcHHHH--HHHhccCCEEEEccc
Confidence 469999999999999999999887543222 2222111 111111110000000000 000013349999999
Q ss_pred CCCC--HHHHHHHHHHhhhccCCccEEEEecCCcc--------------ccccccCCeeeEEecCCCH
Q psy17903 147 DSMT--HAAQAALRRTMEKETKSTRFCLICNYVSC--------------IIQPLTSRCSKFRFKPLAE 198 (355)
Q Consensus 147 d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~~~--------------l~~~l~sr~~~i~~~~~~~ 198 (355)
+.+. ...++.|..+++.......+|+++|.+.. ++..|...|..+.|...+.
T Consensus 169 g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~s~ 236 (254)
T PRK06526 169 GYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFGRWGEVFGDDVVAAAMIDRLVHHAEVISLKGDSY 236 (254)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHHHHHHHcCChHHHHHHHHHHhcCceEEeecCCCc
Confidence 9874 55667788887654334457778875421 1233444556677665443
No 257
>PF05729 NACHT: NACHT domain
Probab=98.80 E-value=5.8e-08 Score=79.68 Aligned_cols=142 Identities=13% Similarity=0.162 Sum_probs=78.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCcccc----ceeeecCCCccch---HHHHHHHHHHHHhhccCCCC---CCCCCCCc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRE----RILELNASDDRGI---QVIRDKVKTFAQQTASGFNQ---DGKPCPPF 138 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~----~~~~~~~~~~~~~---~~i~~~i~~~~~~~~~~~~~---~~~~~~~~ 138 (355)
++|+|++|+|||++++.++..+....... ..+.++....... ..+.+.+............. .......+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNKR 82 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCCc
Confidence 78999999999999999999886533211 1223333221111 12222222111100000000 00000133
Q ss_pred EEEEEeCCCCCCHHHH--------HHHHHHhhh-ccCCccEEEEecCCcc-ccccccCCeeeEEecCCCHHHHHHHHHHH
Q psy17903 139 KIVILDEADSMTHAAQ--------AALRRTMEK-ETKSTRFCLICNYVSC-IIQPLTSRCSKFRFKPLAENTMLTRLQYI 208 (355)
Q Consensus 139 ~vliiDe~d~l~~~~~--------~~Ll~~le~-~~~~~~~Il~~~~~~~-l~~~l~sr~~~i~~~~~~~~~~~~~l~~~ 208 (355)
-++|||.+|.+..... ..|..++.. ...++.+++++..... -..........+.+.+++++++.+++++.
T Consensus 83 ~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (166)
T PF05729_consen 83 VLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQYLRKY 162 (166)
T ss_pred eEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHHHHHH
Confidence 4899999999976432 234455554 3456777777764332 12222222367899999999999999987
Q ss_pred HH
Q psy17903 209 CE 210 (355)
Q Consensus 209 ~~ 210 (355)
++
T Consensus 163 f~ 164 (166)
T PF05729_consen 163 FS 164 (166)
T ss_pred hh
Confidence 65
No 258
>KOG0745|consensus
Probab=98.77 E-value=7.1e-08 Score=87.65 Aligned_cols=87 Identities=23% Similarity=0.308 Sum_probs=57.6
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccch----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEE
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~----~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vli 142 (355)
.++|+.||+|+|||.+|+.+|+-+ +.++.-.||...+-. +++...+..+......... .+.+.|||
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l-----dVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVe-----kAQqGIVf 296 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL-----DVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVE-----KAQQGIVF 296 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh-----CCCeEEecccchhhcccccccHHHHHHHHHHHccCCHH-----HHhcCeEE
Confidence 359999999999999999999998 566777777653211 2233333333222111000 01345999
Q ss_pred EeCCCCCCH--------------HHHHHHHHHhhh
Q psy17903 143 LDEADSMTH--------------AAQAALRRTMEK 163 (355)
Q Consensus 143 iDe~d~l~~--------------~~~~~Ll~~le~ 163 (355)
|||+|.+.. ..|++|++++|-
T Consensus 297 lDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEG 331 (564)
T KOG0745|consen 297 LDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEG 331 (564)
T ss_pred EehhhhhcccCccccccccccchhHHHHHHHHhcc
Confidence 999999962 468999999983
No 259
>KOG0736|consensus
Probab=98.77 E-value=5.8e-07 Score=87.18 Aligned_cols=224 Identities=17% Similarity=0.203 Sum_probs=126.4
Q ss_pred ccccHHHHHHHHHHHhcC---------CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccch--HHHHH
Q psy17903 47 VIEQQEVVSVLKKCLSGA---------DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI--QVIRD 115 (355)
Q Consensus 47 ~vg~~~~~~~l~~~l~~~---------~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~i~~ 115 (355)
..+.+..+..+...+.-. ..+.+|++|+||||||++++++++++ ..++++++|.+.... .....
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l-----g~h~~evdc~el~~~s~~~~et 477 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL-----GLHLLEVDCYELVAESASHTET 477 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh-----CCceEeccHHHHhhcccchhHH
Confidence 334555555555555321 12339999999999999999999999 446667776542111 01111
Q ss_pred HHH-HHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHH--------HHHHHHHhh-----hccCCccEEEEecCCcccc
Q psy17903 116 KVK-TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA--------QAALRRTME-----KETKSTRFCLICNYVSCII 181 (355)
Q Consensus 116 ~i~-~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~--------~~~Ll~~le-----~~~~~~~~Il~~~~~~~l~ 181 (355)
.+. .|...... ..-+||+-+.|.+..++ +..+...+. .....++||.+++....+.
T Consensus 478 kl~~~f~~a~~~----------~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp 547 (953)
T KOG0736|consen 478 KLQAIFSRARRC----------SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLP 547 (953)
T ss_pred HHHHHHHHHhhc----------CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCC
Confidence 111 11111111 11288888888774321 222222222 1234577788888888888
Q ss_pred ccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcCC----CHHHHH--------HHHHHHHH---
Q psy17903 182 QPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDF-KALETLVETSGG----DMRRAI--------TCLQSCAR--- 244 (355)
Q Consensus 182 ~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~g----~~r~~~--------~~l~~~~~--- 244 (355)
+.+++-+. .+.++.++++|..+|++-+..... +.. ..++.++..+.| ++.... .-++....
T Consensus 548 ~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~ 625 (953)
T KOG0736|consen 548 ADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGG 625 (953)
T ss_pred HHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhccccc
Confidence 88887766 799999999999999998876543 333 234445555543 222111 11111110
Q ss_pred ---------hhCCCCCCHHHHHHHhCCCChHHHHHHHh---------c-CCHHHHHHHHHHH
Q psy17903 245 ---------LKGGEGIVNEDVLEVTGVIPNPWIEKLLK---------V-DSFQVLEKYIEDL 287 (355)
Q Consensus 245 ---------~~~~~~It~~~v~~~~~~~~~~~~~~l~~---------~-~~~~~~~~~l~~l 287 (355)
...+..++++|+.+.+.+...+....+-. . +..++++.-+.+-
T Consensus 626 ~~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPnV~WdDVGGLeevK~eIldT 687 (953)
T KOG0736|consen 626 LQEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPNVSWDDVGGLEEVKTEILDT 687 (953)
T ss_pred chhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCccchhcccCHHHHHHHHHHH
Confidence 00235688999988876554443332221 1 5566666655543
No 260
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.76 E-value=6.5e-07 Score=93.55 Aligned_cols=191 Identities=13% Similarity=0.131 Sum_probs=113.8
Q ss_pred CCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHH
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 120 (355)
|..-..++-++...+.|... ...+-++|+||+|+||||++..+++... ....+.++..+..........+..+
T Consensus 10 p~~~~~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~~----~~~w~~l~~~d~~~~~f~~~l~~~l 82 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGKN----NLGWYSLDESDNQPERFASYLIAAL 82 (903)
T ss_pred CCCccccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhCC----CeEEEecCcccCCHHHHHHHHHHHH
Confidence 44455677777777666532 2334499999999999999999886542 2234455544422211111111111
Q ss_pred HHhhccC---------CCC-CC------------CCCCCcEEEEEeCCCCCCHHH-HHHHHHHhhhccCCccEEEEecCC
Q psy17903 121 AQQTASG---------FNQ-DG------------KPCPPFKIVILDEADSMTHAA-QAALRRTMEKETKSTRFCLICNYV 177 (355)
Q Consensus 121 ~~~~~~~---------~~~-~~------------~~~~~~~vliiDe~d~l~~~~-~~~Ll~~le~~~~~~~~Il~~~~~ 177 (355)
....... ... .. ......-+|||||+|.+.... ...|..++...+.+.++|+++...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 83 QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 1000000 000 00 000123489999999997554 345666677667788888877653
Q ss_pred ccc-cccccCCeeeEEec----CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Q psy17903 178 SCI-IQPLTSRCSKFRFK----PLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQS 241 (355)
Q Consensus 178 ~~l-~~~l~sr~~~i~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~ 241 (355)
..+ ...++-+...+.+. +++.+|...++... .|..++++.+..+.+.++|++..+.-.+..
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~t~Gwp~~l~l~~~~ 228 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDDVEGWATALQLIALS 228 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCChHHHHHHHHHH
Confidence 222 22333333344444 88999999988754 467789999999999999999776644443
No 261
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.75 E-value=6.1e-07 Score=95.53 Aligned_cols=193 Identities=10% Similarity=0.074 Sum_probs=108.5
Q ss_pred CCCCcccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeee---cCCC---------c
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL---NASD---------D 107 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~---~~~~---------~ 107 (355)
..+++++|.+..++.+..++.-. ...-+-|+|++|+||||+|+++++.+...+....++.. .... .
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~ 260 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDD 260 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccc
Confidence 46889999999999999888533 22239999999999999999999887543211111110 0000 0
Q ss_pred cc-hHHHH-HHHHHHHHhhccCCCC----CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCcccc
Q psy17903 108 RG-IQVIR-DKVKTFAQQTASGFNQ----DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCII 181 (355)
Q Consensus 108 ~~-~~~i~-~~i~~~~~~~~~~~~~----~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~ 181 (355)
.. ...+. ..+............. ..+-...+-+||+||++.. ...+.|....+.......+|++|.+..-+.
T Consensus 261 ~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~ 338 (1153)
T PLN03210 261 YNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVITKDKHFLR 338 (1153)
T ss_pred cchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEEeCcHHHHH
Confidence 00 00011 1111111000000000 0000013458999998753 445566555444445567787887654322
Q ss_pred ccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCCHHHHHHH
Q psy17903 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCD--FKALETLVETSGGDMRRAITC 238 (355)
Q Consensus 182 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~~l~~~~~g~~r~~~~~ 238 (355)
.. .-...+++..++.++..+++...+.+....-+ .+....+++.++|-+-.+.-.
T Consensus 339 ~~--~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vl 395 (1153)
T PLN03210 339 AH--GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVL 395 (1153)
T ss_pred hc--CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 11 01247888899999999999888765432221 244666888899988655443
No 262
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.72 E-value=3.3e-08 Score=77.97 Aligned_cols=107 Identities=17% Similarity=0.261 Sum_probs=61.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCcc---ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCC---------CCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMY---RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG---------KPC 135 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~---~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~---------~~~ 135 (355)
.++++||+|+|||++++.+++.+..... ...++.+++........+...+............... -..
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~~ 85 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALDR 85 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHh
Confidence 4899999999999999999998743100 2345555554433333333332222211111000000 000
Q ss_pred CCcEEEEEeCCCCC-CHHHHHHHHHHhhhccCCccEEEEecC
Q psy17903 136 PPFKIVILDEADSM-THAAQAALRRTMEKETKSTRFCLICNY 176 (355)
Q Consensus 136 ~~~~vliiDe~d~l-~~~~~~~Ll~~le~~~~~~~~Il~~~~ 176 (355)
....+|||||+|.+ ..+..+.|..+++ ..++.+|+++.+
T Consensus 86 ~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 86 RRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp CTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred cCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 12249999999999 8888888877777 556677777764
No 263
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.67 E-value=4.7e-08 Score=81.25 Aligned_cols=94 Identities=23% Similarity=0.368 Sum_probs=53.5
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc-------cchHHHHHHHHHHHHhhccCCCCCCCCCCCcE
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD-------RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFK 139 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-------~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 139 (355)
.+++|+||+|+|||++|.++++++..... .+..++..+. .........+..+. +..
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~--~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~---------------~~d 110 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGY--SVLFITASDLLDELKQSRSDGSYEELLKRLK---------------RVD 110 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT----EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH---------------TSS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCc--ceeEeecCceeccccccccccchhhhcCccc---------------ccc
Confidence 46999999999999999999998765433 2333332210 00011112222222 224
Q ss_pred EEEEeCCCCCC--HHHHHHHHHHhhhccCCccEEEEecCC
Q psy17903 140 IVILDEADSMT--HAAQAALRRTMEKETKSTRFCLICNYV 177 (355)
Q Consensus 140 vliiDe~d~l~--~~~~~~Ll~~le~~~~~~~~Il~~~~~ 177 (355)
+|||||+.... ....+.|..+++..-.+...|++||..
T Consensus 111 lLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~~ 150 (178)
T PF01695_consen 111 LLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNLS 150 (178)
T ss_dssp CEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS-
T ss_pred EecccccceeeecccccccchhhhhHhhcccCeEeeCCCc
Confidence 99999998764 334556667776543333567788743
No 264
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.66 E-value=4.1e-06 Score=72.38 Aligned_cols=138 Identities=18% Similarity=0.174 Sum_probs=89.0
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCC
Q psy17903 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134 (355)
Q Consensus 55 ~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~ 134 (355)
..|..++.... .-.++||+|+|||.+++.+++.+ ...++.+||++..+...+...+...+..+.
T Consensus 23 ~~l~~al~~~~--~~~~~GpagtGKtetik~La~~l-----G~~~~vfnc~~~~~~~~l~ril~G~~~~Ga--------- 86 (231)
T PF12774_consen 23 LTLTQALSLNL--GGALSGPAGTGKTETIKDLARAL-----GRFVVVFNCSEQMDYQSLSRILKGLAQSGA--------- 86 (231)
T ss_dssp HHHHHHHCTTT--EEEEESSTTSSHHHHHHHHHHCT-----T--EEEEETTSSS-HHHHHHHHHHHHHHT----------
T ss_pred HHHHHHhccCC--CCCCcCCCCCCchhHHHHHHHHh-----CCeEEEecccccccHHHHHHHHHHHhhcCc---------
Confidence 34445554332 35789999999999999999998 446789999999899888888888877653
Q ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHHhh-------hc-------------cCCccEEEEecC----CccccccccCCeee
Q psy17903 135 CPPFKIVILDEADSMTHAAQAALRRTME-------KE-------------TKSTRFCLICNY----VSCIIQPLTSRCSK 190 (355)
Q Consensus 135 ~~~~~vliiDe~d~l~~~~~~~Ll~~le-------~~-------------~~~~~~Il~~~~----~~~l~~~l~sr~~~ 190 (355)
-+++||++++..+....+...+. .. .+++.+.++.|. ...+.+.+++-++.
T Consensus 87 -----W~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lFRp 161 (231)
T PF12774_consen 87 -----WLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALFRP 161 (231)
T ss_dssp -----EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTEEE
T ss_pred -----hhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHhhe
Confidence 58999999999876544433322 11 123334444442 24578889999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC
Q psy17903 191 FRFKPLAENTMLTRLQYICEQESVMC 216 (355)
Q Consensus 191 i~~~~~~~~~~~~~l~~~~~~~~~~~ 216 (355)
+.+..|+...+.+++- -..|..-
T Consensus 162 vam~~PD~~~I~ei~L---~s~GF~~ 184 (231)
T PF12774_consen 162 VAMMVPDLSLIAEILL---LSQGFKD 184 (231)
T ss_dssp EE--S--HHHHHHHHH---HCCCTSS
T ss_pred eEEeCCCHHHHHHHHH---HHcCchh
Confidence 9999998887766644 3355543
No 265
>PF14516 AAA_35: AAA-like domain
Probab=98.63 E-value=1.8e-05 Score=72.61 Aligned_cols=201 Identities=18% Similarity=0.161 Sum_probs=115.0
Q ss_pred ccccHHHHHHHHHHHhc-CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc---cchHHHH-HHHHHHH
Q psy17903 47 VIEQQEVVSVLKKCLSG-ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD---RGIQVIR-DKVKTFA 121 (355)
Q Consensus 47 ~vg~~~~~~~l~~~l~~-~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---~~~~~i~-~~i~~~~ 121 (355)
.|.++.+-+.+.+.+.+ |. .+.|.||..+|||++...+.+.+....+...++.+...+. ...+.+. .......
T Consensus 13 Yi~R~~~e~~~~~~i~~~G~--~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~ 90 (331)
T PF14516_consen 13 YIERPPAEQECYQEIVQPGS--YIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEIS 90 (331)
T ss_pred ccCchHHHHHHHHHHhcCCC--EEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHH
Confidence 44555566677767665 43 5899999999999999999998866544333333332211 1122111 1111110
Q ss_pred Hhhc------------cCCCCC---------CCCCCCcEEEEEeCCCCCCH------HHHHHHHHHhhhcc-----CCcc
Q psy17903 122 QQTA------------SGFNQD---------GKPCPPFKIVILDEADSMTH------AAQAALRRTMEKET-----KSTR 169 (355)
Q Consensus 122 ~~~~------------~~~~~~---------~~~~~~~~vliiDe~d~l~~------~~~~~Ll~~le~~~-----~~~~ 169 (355)
..-. .+.... -......=|++|||+|.+.. +....|+...++.. ...+
T Consensus 91 ~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~ 170 (331)
T PF14516_consen 91 RQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLR 170 (331)
T ss_pred HHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEE
Confidence 0000 000000 00001234899999998865 22333444444322 2355
Q ss_pred EEEEecCCcccc-----ccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 170 FCLICNYVSCII-----QPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 170 ~Il~~~~~~~l~-----~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
+|++......+. .++ .-+..+.++.++.+|+...++. .+..+++..++.+...++|.+--+...+..++.
T Consensus 171 li~~~~t~~~~~~~~~~SPF-NIg~~i~L~~Ft~~ev~~L~~~----~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 171 LILAGSTEDYIILDINQSPF-NIGQPIELPDFTPEEVQELAQR----YGLEFSQEQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred EEEecCcccccccCCCCCCc-ccccceeCCCCCHHHHHHHHHh----hhccCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 666654322111 122 3344789999999999877664 466788888999999999999877777776665
Q ss_pred hhCCCCCCHHHHHH
Q psy17903 245 LKGGEGIVNEDVLE 258 (355)
Q Consensus 245 ~~~~~~It~~~v~~ 258 (355)
..++.+++.+
T Consensus 246 ----~~~~~~~l~~ 255 (331)
T PF14516_consen 246 ----EQITLEQLLE 255 (331)
T ss_pred ----ccCcHHHHHH
Confidence 3566555543
No 266
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.62 E-value=8.7e-07 Score=70.25 Aligned_cols=125 Identities=16% Similarity=0.272 Sum_probs=67.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccc-----------------cceeeecCCC--------c---------cchHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYR-----------------ERILELNASD--------D---------RGIQVIR 114 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~-----------------~~~~~~~~~~--------~---------~~~~~i~ 114 (355)
+.++|+||+||||++..++..+....++ +.++.+.... . -..+.+.
T Consensus 8 i~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v~~le 87 (179)
T COG1618 8 IFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNVEGLE 87 (179)
T ss_pred EEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeHHHHH
Confidence 8999999999999999999988643221 1222222111 0 0112222
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCC---CHHHHHHHHHHhhhccCCccEEEEec--CCccccccccCCee
Q psy17903 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM---THAAQAALRRTMEKETKSTRFCLICN--YVSCIIQPLTSRCS 189 (355)
Q Consensus 115 ~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~--~~~~l~~~l~sr~~ 189 (355)
+........... ...+|||||+..| ++.....+-..|....+ +|++-+ +.+.+...++++..
T Consensus 88 ~i~~~al~rA~~----------~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp---liatlHrrsr~P~v~~ik~~~~ 154 (179)
T COG1618 88 EIAIPALRRALE----------EADVIIIDEIGPMELKSKKFREAVEEVLKSGKP---LIATLHRRSRHPLVQRIKKLGG 154 (179)
T ss_pred HHhHHHHHHHhh----------cCCEEEEecccchhhccHHHHHHHHHHhcCCCc---EEEEEecccCChHHHHhhhcCC
Confidence 222221111111 1249999999887 33444555556653322 444443 44567778888888
Q ss_pred eEEecCCCHHHHHHHHHHH
Q psy17903 190 KFRFKPLAENTMLTRLQYI 208 (355)
Q Consensus 190 ~i~~~~~~~~~~~~~l~~~ 208 (355)
.+.| ++.+..-.++.++
T Consensus 155 v~v~--lt~~NR~~i~~~I 171 (179)
T COG1618 155 VYVF--LTPENRNRILNEI 171 (179)
T ss_pred EEEE--EccchhhHHHHHH
Confidence 7664 4433333444433
No 267
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.61 E-value=3e-07 Score=83.65 Aligned_cols=132 Identities=17% Similarity=0.259 Sum_probs=72.4
Q ss_pred HHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH-HHHHHHhh--ccC
Q psy17903 53 VVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK-VKTFAQQT--ASG 127 (355)
Q Consensus 53 ~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-i~~~~~~~--~~~ 127 (355)
++.....++.+- ...+++|+||+|+|||+++.++++++..... .++.++..+. ...+... ........ ...
T Consensus 168 ~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~--~V~y~t~~~l--~~~l~~~~~~~~~~~~~~~~~ 243 (329)
T PRK06835 168 ILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGK--SVIYRTADEL--IEILREIRFNNDKELEEVYDL 243 (329)
T ss_pred HHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCC--eEEEEEHHHH--HHHHHHHHhccchhHHHHHHH
Confidence 344444555531 2255999999999999999999999865433 4455444331 1111110 00000000 000
Q ss_pred CCCCCCCCCCcEEEEEeCCCCC--CHHHHHHHHHHhhhccC-CccEEEEecCC-cc----ccccccCC----eeeEEecC
Q psy17903 128 FNQDGKPCPPFKIVILDEADSM--THAAQAALRRTMEKETK-STRFCLICNYV-SC----IIQPLTSR----CSKFRFKP 195 (355)
Q Consensus 128 ~~~~~~~~~~~~vliiDe~d~l--~~~~~~~Ll~~le~~~~-~~~~Il~~~~~-~~----l~~~l~sr----~~~i~~~~ 195 (355)
. .+..+|||||++.. ++..+..|..+++..-. ...+|++||.. .. +.+.+.|| +..+.|..
T Consensus 244 l-------~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~~G 316 (329)
T PRK06835 244 L-------INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKFYG 316 (329)
T ss_pred h-------ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEecC
Confidence 0 02349999999655 55567788888875432 34577788743 22 22344444 44666644
No 268
>PRK04132 replication factor C small subunit; Provisional
Probab=98.60 E-value=2.4e-08 Score=100.28 Aligned_cols=52 Identities=48% Similarity=0.964 Sum_probs=48.9
Q ss_pred CCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHH
Q psy17903 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTST 82 (355)
Q Consensus 31 ~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~l 82 (355)
.+.||.+||||.+|++++||+++++.|+.+++.+..+|++|+||||+||...
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEECCCCCCcccc
Confidence 4679999999999999999999999999999999999999999999999643
No 269
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.59 E-value=1.4e-07 Score=83.82 Aligned_cols=148 Identities=18% Similarity=0.222 Sum_probs=86.1
Q ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCC--CCC
Q psy17903 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGK 133 (355)
Q Consensus 56 ~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~--~~~ 133 (355)
-+..+++.+. ++||+||+|+|||++++.+.+.+..+.+ ....++.+.......++..++.. ...... -+.
T Consensus 25 ll~~l~~~~~--pvLl~G~~GtGKT~li~~~l~~l~~~~~--~~~~~~~s~~Tts~~~q~~ie~~----l~k~~~~~~gP 96 (272)
T PF12775_consen 25 LLDLLLSNGR--PVLLVGPSGTGKTSLIQNFLSSLDSDKY--LVITINFSAQTTSNQLQKIIESK----LEKRRGRVYGP 96 (272)
T ss_dssp HHHHHHHCTE--EEEEESSTTSSHHHHHHHHHHCSTTCCE--EEEEEES-TTHHHHHHHHCCCTT----ECECTTEEEEE
T ss_pred HHHHHHHcCC--cEEEECCCCCchhHHHHhhhccCCcccc--ceeEeeccCCCCHHHHHHHHhhc----EEcCCCCCCCC
Confidence 3444555543 6999999999999999998887654432 23445555544444444333221 111000 011
Q ss_pred CCCCcEEEEEeCCCCCCHH------HHHHHHHHhhhcc------------CCccEEEEecCC---ccccccccCCeeeEE
Q psy17903 134 PCPPFKIVILDEADSMTHA------AQAALRRTMEKET------------KSTRFCLICNYV---SCIIQPLTSRCSKFR 192 (355)
Q Consensus 134 ~~~~~~vliiDe~d~l~~~------~~~~Ll~~le~~~------------~~~~~Il~~~~~---~~l~~~l~sr~~~i~ 192 (355)
+..++-++||||++.-.++ ..+.|+.+++... .++.+|.+++.. ..+.+.+.+.+.++.
T Consensus 97 ~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~i~~ 176 (272)
T PF12775_consen 97 PGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFNILN 176 (272)
T ss_dssp ESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEEEEE
T ss_pred CCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheEEEE
Confidence 2123448999999876543 2456666665321 246677666643 236678889999999
Q ss_pred ecCCCHHHHHHHHHHHHHH
Q psy17903 193 FKPLAENTMLTRLQYICEQ 211 (355)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~ 211 (355)
+..|+.+.+..++..++..
T Consensus 177 ~~~p~~~sl~~If~~il~~ 195 (272)
T PF12775_consen 177 IPYPSDESLNTIFSSILQS 195 (272)
T ss_dssp ----TCCHHHHHHHHHHHH
T ss_pred ecCCChHHHHHHHHHHHhh
Confidence 9999999999998887764
No 270
>PRK06921 hypothetical protein; Provisional
Probab=98.55 E-value=5.7e-07 Score=79.70 Aligned_cols=100 Identities=13% Similarity=0.213 Sum_probs=56.4
Q ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcCC-ccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEe
Q psy17903 66 LPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILD 144 (355)
Q Consensus 66 ~~~~ll~Gp~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiD 144 (355)
..+++|+|++|+|||+++.++++++... .. .++.+...+. ...+...+..+.... ... ....+||||
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~--~v~y~~~~~l--~~~l~~~~~~~~~~~-~~~-------~~~dlLiID 184 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGV--PVLYFPFVEG--FGDLKDDFDLLEAKL-NRM-------KKVEVLFID 184 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCc--eEEEEEHHHH--HHHHHHHHHHHHHHH-HHh-------cCCCEEEEe
Confidence 3459999999999999999999998643 22 3444443221 112222111111100 000 023499999
Q ss_pred CCCC-------CCHHHHHHHHHHhhhccC-CccEEEEecCC
Q psy17903 145 EADS-------MTHAAQAALRRTMEKETK-STRFCLICNYV 177 (355)
Q Consensus 145 e~d~-------l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~ 177 (355)
|++. .+.-.+..|..+++.... ...+|+++|..
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~~ 225 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSELT 225 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 9944 344445667777765432 24467788753
No 271
>PHA00729 NTP-binding motif containing protein
Probab=98.55 E-value=3.5e-07 Score=77.90 Aligned_cols=126 Identities=12% Similarity=0.122 Sum_probs=71.4
Q ss_pred HHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccc--cceeeecCC---CccchHHHHHHHHHHHHhhccCCCCC
Q psy17903 57 LKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYR--ERILELNAS---DDRGIQVIRDKVKTFAQQTASGFNQD 131 (355)
Q Consensus 57 l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~--~~~~~~~~~---~~~~~~~i~~~i~~~~~~~~~~~~~~ 131 (355)
+.+.+..+...+++|+|+||+|||++|.++++.+...... ......+.. -....+.+.+.+.......
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll~~L~~a~~~~------- 80 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDALEKIQDAIDND------- 80 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHHHHHHHHHhcC-------
Confidence 3344455566679999999999999999999987411100 000000100 0122333444443322110
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHH
Q psy17903 132 GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207 (355)
Q Consensus 132 ~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~ 207 (355)
. ...++||||+......-. .+... + .....+.+++++|+..+.|.+++.+++...++.
T Consensus 81 ~----~~dlLIIDd~G~~~~~~~--------wh~~~----~--~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 81 Y----RIPLIIFDDAGIWLSKYV--------WYEDY----M--KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred C----CCCEEEEeCCchhhcccc--------hhhhc----c--chHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 0 123899999754321100 00000 0 123346788899999999999999999888775
No 272
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.54 E-value=1.9e-07 Score=84.24 Aligned_cols=122 Identities=11% Similarity=0.163 Sum_probs=65.7
Q ss_pred CCCCCcccc----cHHHHHHHHHHHhcC----CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHH
Q psy17903 41 PKTIDDVIE----QQEVVSVLKKCLSGA----DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQV 112 (355)
Q Consensus 41 p~~~~~~vg----~~~~~~~l~~~l~~~----~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (355)
..+|+++.. +..+......++... ...+++|+||+|+|||+++.++++++...... +..+..++ -...
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~--v~~~~~~~--l~~~ 198 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVS--STLLHFPE--FIRE 198 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC--EEEEEHHH--HHHH
Confidence 456776653 233444445566532 23459999999999999999999998644332 22222221 1111
Q ss_pred HHHHHH-----HHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHH-Hhhhc-cCCccEEEEecCC
Q psy17903 113 IRDKVK-----TFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRR-TMEKE-TKSTRFCLICNYV 177 (355)
Q Consensus 113 i~~~i~-----~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~-~le~~-~~~~~~Il~~~~~ 177 (355)
+...+. ..... . ....+|||||+..-.. -....++. +++.. ......|+++|-.
T Consensus 199 lk~~~~~~~~~~~l~~-l----------~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 199 LKNSISDGSVKEKIDA-V----------KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred HHHHHhcCcHHHHHHH-h----------cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 111110 00000 0 0234999999976543 33333444 44433 3445567788754
No 273
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.54 E-value=2.5e-06 Score=83.62 Aligned_cols=136 Identities=23% Similarity=0.266 Sum_probs=83.4
Q ss_pred CcccccHHHHHHHHHHHhcCC---------C---CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchH-
Q psy17903 45 DDVIEQQEVVSVLKKCLSGAD---------L---PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQ- 111 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~~---------~---~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~- 111 (355)
..+.|++.++..|.=.+-+|. . -|+||.|.||+|||.+.+.+++-..... +....++...+..
T Consensus 286 PsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~v----ytsgkgss~~GLTA 361 (682)
T COG1241 286 PSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGV----YTSGKGSSAAGLTA 361 (682)
T ss_pred ccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceE----EEccccccccCcee
Confidence 356788888777765553321 1 2599999999999999999998864321 2222222222211
Q ss_pred -HHHHHH--HHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-------------CCccEEEEec
Q psy17903 112 -VIRDKV--KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTRFCLICN 175 (355)
Q Consensus 112 -~i~~~i--~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~ 175 (355)
..++.. ......+. -..++++|++|||+|.|+.....+|...||+.. ..+-++.++|
T Consensus 362 av~rd~~tge~~LeaGA-------LVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaN 434 (682)
T COG1241 362 AVVRDKVTGEWVLEAGA-------LVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAAN 434 (682)
T ss_pred EEEEccCCCeEEEeCCE-------EEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhC
Confidence 001100 00001111 111466799999999999999999999999632 2345566676
Q ss_pred CCc-------------cccccccCCeeeE
Q psy17903 176 YVS-------------CIIQPLTSRCSKF 191 (355)
Q Consensus 176 ~~~-------------~l~~~l~sr~~~i 191 (355)
... .+.++|.||+..+
T Consensus 435 P~~Gryd~~~~~~enI~l~~~lLSRFDLi 463 (682)
T COG1241 435 PKFGRYDPKKTVAENINLPAPLLSRFDLI 463 (682)
T ss_pred CCCCcCCCCCCHHHhcCCChhHHhhCCee
Confidence 432 1467899998744
No 274
>PRK09183 transposase/IS protein; Provisional
Probab=98.52 E-value=3.6e-07 Score=80.73 Aligned_cols=97 Identities=20% Similarity=0.223 Sum_probs=54.5
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH-----HHHHHHhhccCCCCCCCCCCCcEEE
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK-----VKTFAQQTASGFNQDGKPCPPFKIV 141 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-----i~~~~~~~~~~~~~~~~~~~~~~vl 141 (355)
.+++|+||+|+|||+++.+++........ .+..++..+.. ..+... +........ . ...++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~--~v~~~~~~~l~--~~l~~a~~~~~~~~~~~~~~------~----~~dlL 168 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGI--KVRFTTAADLL--LQLSTAQRQGRYKTTLQRGV------M----APRLL 168 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCC--eEEEEeHHHHH--HHHHHHHHCCcHHHHHHHHh------c----CCCEE
Confidence 35999999999999999999887533222 23333322110 011000 000000000 0 22399
Q ss_pred EEeCCCCC--CHHHHHHHHHHhhhccCCccEEEEecCC
Q psy17903 142 ILDEADSM--THAAQAALRRTMEKETKSTRFCLICNYV 177 (355)
Q Consensus 142 iiDe~d~l--~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 177 (355)
||||++.. .....+.|..+++.......+|+++|..
T Consensus 169 iiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 169 IIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred EEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 99999875 4455567888876533333477788753
No 275
>KOG0741|consensus
Probab=98.50 E-value=2.2e-06 Score=79.96 Aligned_cols=152 Identities=14% Similarity=0.246 Sum_probs=87.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCC-ccch------HHHHHHHHHHHHhhccCCCCCCCCCCCcEEE
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD-DRGI------QVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~------~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vl 141 (355)
+||+||||+|||+||..++... .++++.+-.++ ..+. ..+...+...... .--+|
T Consensus 541 vLl~Gp~~sGKTaLAA~iA~~S-----~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS-------------~lsii 602 (744)
T KOG0741|consen 541 VLLEGPPGSGKTALAAKIALSS-----DFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKS-------------PLSII 602 (744)
T ss_pred EEEecCCCCChHHHHHHHHhhc-----CCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcC-------------cceEE
Confidence 9999999999999999999886 55666554333 2222 2233333332222 22399
Q ss_pred EEeCCCCCCH----------HHHHHHHHHhhhccCC--ccEEEEecCCccccccc--cCCe-eeEEecCCCH-HHHHHHH
Q psy17903 142 ILDEADSMTH----------AAQAALRRTMEKETKS--TRFCLICNYVSCIIQPL--TSRC-SKFRFKPLAE-NTMLTRL 205 (355)
Q Consensus 142 iiDe~d~l~~----------~~~~~Ll~~le~~~~~--~~~Il~~~~~~~l~~~l--~sr~-~~i~~~~~~~-~~~~~~l 205 (355)
+||++++|-. -..++|+-++.+.|+. -.+|++|+....++..+ ..-+ ..++++.++. +++.+++
T Consensus 603 vvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl 682 (744)
T KOG0741|consen 603 VVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVL 682 (744)
T ss_pred EEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHH
Confidence 9999998832 2356666667665443 55677666543332221 1111 2677777775 7777776
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHcCC-----CHHHHHHHHHHHH
Q psy17903 206 QYICEQESVMCDFKALETLVETSGG-----DMRRAITCLQSCA 243 (355)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~l~~~~~g-----~~r~~~~~l~~~~ 243 (355)
... -.++++..+.+++.-.+ .+.+++..++.+.
T Consensus 683 ~~~-----n~fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a~ 720 (744)
T KOG0741|consen 683 EEL-----NIFSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMAR 720 (744)
T ss_pred HHc-----cCCCcchhHHHHHHHhccccchhHHHHHHHHHHHh
Confidence 632 23455555554443322 2566666666543
No 276
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.50 E-value=1.2e-07 Score=79.32 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=33.5
Q ss_pred cccccHHHHHHHHHHHh---cCCCCeEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 46 DVIEQQEVVSVLKKCLS---GADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~---~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
+++|+++.++.|...+. .+..+.++|+|++|+|||++++++...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999993 2333449999999999999999998887543
No 277
>KOG0482|consensus
Probab=98.49 E-value=4.1e-06 Score=77.81 Aligned_cols=284 Identities=18% Similarity=0.202 Sum_probs=163.6
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCC---------C---CeEEEECCCCCCHHHHHHHHHHHhcCCcccccee
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD---------L---PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERIL 100 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~---------~---~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~ 100 (355)
-.+.||....---++.|+.++++.|.-++-+|. . -|+++.|.||+.||.|.+.+.+-..... +.
T Consensus 330 ~d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgv----YT 405 (721)
T KOG0482|consen 330 GDFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGV----YT 405 (721)
T ss_pred ccHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccc----ee
Confidence 344555544444579999999998887774331 1 1499999999999999999988753322 22
Q ss_pred eecCCCccchHHHHHHHHHHHHhhccCC-CCCCC--CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc------------
Q psy17903 101 ELNASDDRGIQVIRDKVKTFAQQTASGF-NQDGK--PCPPFKIVILDEADSMTHAAQAALRRTMEKET------------ 165 (355)
Q Consensus 101 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~-~~~~~--~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------ 165 (355)
...++ +++.......+. +..+- ...|. ..++.+|.+|||+|.|.....-++-++||.-.
T Consensus 406 TGrGS--SGVGLTAAVmkD----pvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtL 479 (721)
T KOG0482|consen 406 TGRGS--SGVGLTAAVMKD----PVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTL 479 (721)
T ss_pred cCCCC--CccccchhhhcC----CCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccch
Confidence 22222 222211111110 11000 00011 11466799999999999888888888888532
Q ss_pred -CCccEEEEecCCc-------------cccccccCCee-------------------------------eEEecCCCHHH
Q psy17903 166 -KSTRFCLICNYVS-------------CIIQPLTSRCS-------------------------------KFRFKPLAENT 200 (355)
Q Consensus 166 -~~~~~Il~~~~~~-------------~l~~~l~sr~~-------------------------------~i~~~~~~~~~ 200 (355)
..+.++.++|... .+..+|.||+. ...|.|++.+-
T Consensus 480 NAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~~~fepl~~~~ 559 (721)
T KOG0482|consen 480 NARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPPLDFEPLDPNL 559 (721)
T ss_pred hhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCCccCCCCCHHH
Confidence 2344555555321 13456666653 23466677777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH--------------cCCCHHHHHHHHHHHH---HhhCCCCCCHHHHHHHhCCC
Q psy17903 201 MLTRLQYICEQESVMCDFKALETLVET--------------SGGDMRRAITCLQSCA---RLKGGEGIVNEDVLEVTGVI 263 (355)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~l~~~--------------~~g~~r~~~~~l~~~~---~~~~~~~It~~~v~~~~~~~ 263 (355)
++.++. .|+..+-.++++..+++... +.-.+|.++.+|+... .+.-...+..+||.+++.-+
T Consensus 560 mR~yI~-~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 560 MRRYIS-LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred HHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 776655 55656666777777776543 1246777777775433 33234668888888776321
Q ss_pred Ch---HHHHH---HHhcCCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Q psy17903 264 PN---PWIEK---LLKVDSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNAR 329 (355)
Q Consensus 264 ~~---~~~~~---l~~~~~~~~~~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~ 329 (355)
.- +...+ .-+....+.+..+++++.. .|.....+-....+...+ +|++.++...++.-.++.-.
T Consensus 639 e~sK~sL~~~~~~~~~~~~~~~if~iirel~~e~g~~~v~~s~~~~r~~~k--Gfs~~ql~~~i~ey~~lnVw 709 (721)
T KOG0482|consen 639 EMSKDSLYQDDGQKEDTSATDAIFAIIRELAGEGGKRCVKLSNAEQRCVRK--GFSEAQLKKCIDEYAELNVW 709 (721)
T ss_pred HhhhcccccccccccccchHHHHHHHHHHHHhhcCCceeeHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCeE
Confidence 11 10000 0000235677778888876 454444444444443333 79999888877776665433
No 278
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=98.43 E-value=3.6e-06 Score=67.50 Aligned_cols=99 Identities=20% Similarity=0.239 Sum_probs=86.5
Q ss_pred CCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--------------------
Q psy17903 251 IVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS-------------------- 307 (355)
Q Consensus 251 It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~-------------------- 307 (355)
||.++|.++++.+..+.+++++++ +|..++...++++...|.++..++..+.++++.
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~~ 80 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEEE 80 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTTT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHHH
Confidence 689999999999999999999998 999999999999999999999999999888773
Q ss_pred -------cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 308 -------ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 308 -------~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
+..++...+.++++.+.++...++.+.++++.+|..+.++|.
T Consensus 81 ~~~~~~~a~~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~ 129 (143)
T PF12169_consen 81 EEKLKELAKKFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQ 129 (143)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHH
Confidence 134778888889999999999999999999999999999986
No 279
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=98.42 E-value=3.6e-05 Score=71.19 Aligned_cols=107 Identities=9% Similarity=0.130 Sum_probs=70.3
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhhhc------cCCccEEEEecCC---ccccccccCC-eeeEEecCCCHHHHHHHHH
Q psy17903 137 PFKIVILDEADSMTHAAQAALRRTMEKE------TKSTRFCLICNYV---SCIIQPLTSR-CSKFRFKPLAENTMLTRLQ 206 (355)
Q Consensus 137 ~~~vliiDe~d~l~~~~~~~Ll~~le~~------~~~~~~Il~~~~~---~~l~~~l~sr-~~~i~~~~~~~~~~~~~l~ 206 (355)
.+.|||||++..-... .+.+...|-+- .....+||.|++. ..+.+++-+| +..+.+...+.+-...++.
T Consensus 148 ~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 3569999999776543 33344333221 2234566667654 2355666555 4578999999999999999
Q ss_pred HHHHHcC-C-------------------CCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 207 YICEQES-V-------------------MCDFKALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 207 ~~~~~~~-~-------------------~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
..+.... . ......++..+..-||-+..+.-+.+++..
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 9886531 1 124455667777789988888888877664
No 280
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.42 E-value=1.4e-06 Score=76.71 Aligned_cols=116 Identities=16% Similarity=0.265 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHH--HHHhhccC
Q psy17903 51 QEVVSVLKKCLSGA-DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT--FAQQTASG 127 (355)
Q Consensus 51 ~~~~~~l~~~l~~~-~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~--~~~~~~~~ 127 (355)
..++..+....+.- +..+++|+||||+|||++|.++++++....+ .+..+..++. +..+...... ........
T Consensus 89 ~~~l~~~~~~~~~~~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~--sv~f~~~~el--~~~Lk~~~~~~~~~~~l~~~ 164 (254)
T COG1484 89 KKALEDLASLVEFFERGENLVLLGPPGVGKTHLAIAIGNELLKAGI--SVLFITAPDL--LSKLKAAFDEGRLEEKLLRE 164 (254)
T ss_pred HHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHcCC--eEEEEEHHHH--HHHHHHHHhcCchHHHHHHH
Confidence 34444444443221 3345999999999999999999999963333 3444443321 1111111110 00000000
Q ss_pred CCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHhhhccCCccEEEEecCC
Q psy17903 128 FNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKETKSTRFCLICNYV 177 (355)
Q Consensus 128 ~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~~~~~~~Il~~~~~ 177 (355)
. ....++||||+..... ...+.+..++...-..-..++++|.+
T Consensus 165 l-------~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~~~tsN~~ 209 (254)
T COG1484 165 L-------KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSLIITSNLS 209 (254)
T ss_pred h-------hcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccceeecCCC
Confidence 0 1345999999988644 34455555554432222237788754
No 281
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.41 E-value=6.2e-05 Score=72.29 Aligned_cols=50 Identities=16% Similarity=0.267 Sum_probs=41.2
Q ss_pred CCCCcccccHHHHHHHHHHH----hcCCCC--eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 42 KTIDDVIEQQEVVSVLKKCL----SGADLP--HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l----~~~~~~--~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.-|+++.|.++++++|...+ .+...+ -++|.||||+|||++++.+++.+.
T Consensus 73 ~fF~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 73 PAFEEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred cchhcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 36889999999999888777 333222 399999999999999999999874
No 282
>KOG0480|consensus
Probab=98.40 E-value=2.9e-06 Score=80.79 Aligned_cols=135 Identities=24% Similarity=0.286 Sum_probs=79.1
Q ss_pred CCcccccHHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchH
Q psy17903 44 IDDVIEQQEVVSVLKKCLSGA------------DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQ 111 (355)
Q Consensus 44 ~~~~vg~~~~~~~l~~~l~~~------------~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 111 (355)
|..+.||+.++.-|.-.+-+| .-.|++|.|.||+|||.+.++.+.-+... .+...+++...+..
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~----vYtsGkaSSaAGLT 419 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRS----VYTSGKASSAAGLT 419 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcc----eEecCcccccccce
Confidence 345667877776665555332 11359999999999999999998776332 22233333222211
Q ss_pred H--HHHH-HHHHH-HhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-------------CCccEEEEe
Q psy17903 112 V--IRDK-VKTFA-QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTRFCLIC 174 (355)
Q Consensus 112 ~--i~~~-i~~~~-~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~ 174 (355)
. .++- -..|. ..+.. ..++.+|..|||+|.|....|.+|.+.||+-. ..+-+|.++
T Consensus 420 aaVvkD~esgdf~iEAGAL-------mLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAA 492 (764)
T KOG0480|consen 420 AAVVKDEESGDFTIEAGAL-------MLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAA 492 (764)
T ss_pred EEEEecCCCCceeeecCcE-------EEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhc
Confidence 0 0000 00000 00111 11355699999999999988999999999632 234455666
Q ss_pred cCCc-------------cccccccCCee
Q psy17903 175 NYVS-------------CIIQPLTSRCS 189 (355)
Q Consensus 175 ~~~~-------------~l~~~l~sr~~ 189 (355)
|+.. ++..+|.||+.
T Consensus 493 NPv~GhYdR~ktl~eNi~msApimSRFD 520 (764)
T KOG0480|consen 493 NPVGGHYDRKKTLRENINMSAPIMSRFD 520 (764)
T ss_pred CCcCCccccccchhhhcCCCchhhhhhc
Confidence 6431 24567778765
No 283
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.39 E-value=2.6e-05 Score=72.18 Aligned_cols=94 Identities=18% Similarity=0.242 Sum_probs=54.7
Q ss_pred HHHhcCCCCeEEEECCCCCCHHHHHHHHHHH--hcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy17903 59 KCLSGADLPHFLFYGPPGTGKTSTMIAACHQ--LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP 136 (355)
Q Consensus 59 ~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~--l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~ 136 (355)
.+++.+ .|+++.||+|||||+++.++... +..+ .......+...+..- ..... .
T Consensus 204 ~fve~~--~Nli~lGp~GTGKThla~~l~~~~a~~sG------------~f~T~a~Lf~~L~~~-~lg~v---------~ 259 (449)
T TIGR02688 204 PLVEPN--YNLIELGPKGTGKSYIYNNLSPYVILISG------------GTITVAKLFYNISTR-QIGLV---------G 259 (449)
T ss_pred HHHhcC--CcEEEECCCCCCHHHHHHHHhHHHHHHcC------------CcCcHHHHHHHHHHH-HHhhh---------c
Confidence 344433 46999999999999999998777 2111 112222222222210 00000 1
Q ss_pred CcEEEEEeCCCCCCH----HHHHHHHHHhhhcc---------CCccEEEEecC
Q psy17903 137 PFKIVILDEADSMTH----AAQAALRRTMEKET---------KSTRFCLICNY 176 (355)
Q Consensus 137 ~~~vliiDe~d~l~~----~~~~~Ll~~le~~~---------~~~~~Il~~~~ 176 (355)
...+|+|||+..+.- +..+.|..+|+... .+.-++|.+|-
T Consensus 260 ~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi 312 (449)
T TIGR02688 260 RWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNV 312 (449)
T ss_pred cCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEEEEccc
Confidence 456999999999653 24466777787532 34557777763
No 284
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.39 E-value=3.5e-06 Score=71.31 Aligned_cols=121 Identities=23% Similarity=0.367 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHH-------HHHHHh
Q psy17903 51 QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV-------KTFAQQ 123 (355)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i-------~~~~~~ 123 (355)
+++.+.+...+.++. ...++.|++|+|||+++..+.+.+.... ..++-+.. .......+.+.. ..+...
T Consensus 4 ~~Q~~a~~~~l~~~~-~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~ap-T~~Aa~~L~~~~~~~a~Ti~~~l~~ 79 (196)
T PF13604_consen 4 EEQREAVRAILTSGD-RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAP-TNKAAKELREKTGIEAQTIHSFLYR 79 (196)
T ss_dssp HHHHHHHHHHHHCTC-SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEES-SHHHHHHHHHHHTS-EEEHHHHTTE
T ss_pred HHHHHHHHHHHhcCC-eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECC-cHHHHHHHHHhhCcchhhHHHHHhc
Confidence 345556666666543 3488999999999999999988875543 23333333 222333333331 111111
Q ss_pred hccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCC
Q psy17903 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177 (355)
Q Consensus 124 ~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 177 (355)
..............+.+|||||+..+.......|++.+.. .+..+|++++..
T Consensus 80 ~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~~ 131 (196)
T PF13604_consen 80 IPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDPN 131 (196)
T ss_dssp ECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-TT
T ss_pred CCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCcc
Confidence 1110000000012456999999999999888888888875 356788888643
No 285
>KOG0478|consensus
Probab=98.37 E-value=8.5e-06 Score=78.29 Aligned_cols=118 Identities=22% Similarity=0.259 Sum_probs=72.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchH-------HHHHHHHHHHHhhccCCCCCCCCCCCcEE
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQ-------VIRDKVKTFAQQTASGFNQDGKPCPPFKI 140 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~-------~i~~~i~~~~~~~~~~~~~~~~~~~~~~v 140 (355)
|+|++|.||+|||.+.+.+++-+....+ ....++...+.. +-++.+- ..+.. ..++.++
T Consensus 464 NILL~GDPGtsKSqlLqyv~~l~pRg~y----TSGkGsSavGLTayVtrd~dtkqlVL---esGAL-------VLSD~Gi 529 (804)
T KOG0478|consen 464 NILLVGDPGTSKSQLLQYCHRLLPRGVY----TSGKGSSAVGLTAYVTKDPDTRQLVL---ESGAL-------VLSDNGI 529 (804)
T ss_pred eEEEecCCCcCHHHHHHHHHHhCCccee----ecCCccchhcceeeEEecCccceeee---ecCcE-------EEcCCce
Confidence 4999999999999999999988754322 111111110000 0000000 01111 0135569
Q ss_pred EEEeCCCCCCHHHHHHHHHHhhhc-------------cCCccEEEEecCC------c-------cccccccCCeeeE--E
Q psy17903 141 VILDEADSMTHAAQAALRRTMEKE-------------TKSTRFCLICNYV------S-------CIIQPLTSRCSKF--R 192 (355)
Q Consensus 141 liiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~~Il~~~~~------~-------~l~~~l~sr~~~i--~ 192 (355)
.+|||+|.|+....+.|.+.||.- +..+-++.++|.. . .+.|+|.||+..| -
T Consensus 530 CCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIyll 609 (804)
T KOG0478|consen 530 CCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLL 609 (804)
T ss_pred EEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEE
Confidence 999999999999999999999863 2345566677732 1 1568899999854 3
Q ss_pred ecCCCHH
Q psy17903 193 FKPLAEN 199 (355)
Q Consensus 193 ~~~~~~~ 199 (355)
+.++++.
T Consensus 610 lD~~DE~ 616 (804)
T KOG0478|consen 610 LDKPDER 616 (804)
T ss_pred ecCcchh
Confidence 5666654
No 286
>KOG2543|consensus
Probab=98.33 E-value=3.9e-05 Score=69.22 Aligned_cols=196 Identities=17% Similarity=0.086 Sum_probs=110.1
Q ss_pred CcccccHHHHHHHHHHHhcCC--CCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc------------
Q psy17903 45 DDVIEQQEVVSVLKKCLSGAD--LPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG------------ 109 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~~--~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------------ 109 (355)
..+.+++.+++.|..++-... .|. +.|||..|+|||.+++.+.+..+- ..+.+++-+-..
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~-----~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL-----ENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC-----cceeeehHHhccHHHHHHHHHHHh
Confidence 356789999999999986543 444 799999999999999999999832 222222211000
Q ss_pred -------------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH---HHHHHHHHhhhc-cCCccEEE
Q psy17903 110 -------------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA---AQAALRRTMEKE-TKSTRFCL 172 (355)
Q Consensus 110 -------------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~---~~~~Ll~~le~~-~~~~~~Il 172 (355)
.+.+...+..+.+....... ...-+||+|++|.+..- ..+.|.+.-+-- ...+++++
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~------d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iil 154 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNR------DQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIIL 154 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhcc------CceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEE
Confidence 11222222222221111111 12348999999998642 223333322211 22566666
Q ss_pred EecCCcccccc-ccCCe-eeEEecCCCHHHHHHHHHHHHHHcCCCCCH----HHHHHH----HHHcCCCHHHHHHHHHHH
Q psy17903 173 ICNYVSCIIQP-LTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDF----KALETL----VETSGGDMRRAITCLQSC 242 (355)
Q Consensus 173 ~~~~~~~l~~~-l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~l----~~~~~g~~r~~~~~l~~~ 242 (355)
......+.... ..--+ ..++|+.++.+++..++.+--.. .... .-+..+ ...| +|+..+...+...
T Consensus 155 s~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~---~r~~~~ya~fl~v~l~vF~~~c-rd~~eL~~~~~~~ 230 (438)
T KOG2543|consen 155 SAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPG---KRKLDVYAQFLHVLLQVFYMAC-RDVNELRSLISLA 230 (438)
T ss_pred eccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcCCcc---ccchHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHH
Confidence 66554443221 11111 37899999999999988753221 2222 222222 2334 4999888888766
Q ss_pred HHhh----CCCCCCHHH
Q psy17903 243 ARLK----GGEGIVNED 255 (355)
Q Consensus 243 ~~~~----~~~~It~~~ 255 (355)
.... .++.|+..+
T Consensus 231 wpky~epi~~~~i~~~d 247 (438)
T KOG2543|consen 231 WPKYCEPITKGKIDPTD 247 (438)
T ss_pred HHhhccccccCCCChhH
Confidence 5433 345666666
No 287
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.33 E-value=6e-07 Score=73.77 Aligned_cols=61 Identities=10% Similarity=0.252 Sum_probs=35.0
Q ss_pred EEEEEeCCCCC---CHHHHHHHHHHhhhccCCccEEEEecC--CccccccccCC--eeeEEecCCCHHHHH
Q psy17903 139 KIVILDEADSM---THAAQAALRRTMEKETKSTRFCLICNY--VSCIIQPLTSR--CSKFRFKPLAENTML 202 (355)
Q Consensus 139 ~vliiDe~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~--~~~l~~~l~sr--~~~i~~~~~~~~~~~ 202 (355)
.++||||+..| ++.-++++.+.|+. . ..+|.+-.. ...+.+.+++| +.++++.+-+.+.+.
T Consensus 97 ~liviDEIG~mEl~~~~F~~~v~~~l~s--~-~~vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~ 164 (168)
T PF03266_consen 97 DLIVIDEIGKMELKSPGFREAVEKLLDS--N-KPVIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALP 164 (168)
T ss_dssp HEEEE---STTCCC-CHHHHHHHHHHCT--T-SEEEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHH
T ss_pred CEEEEeccchhhhcCHHHHHHHHHHHcC--C-CcEEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHh
Confidence 49999999877 45667888888882 2 223433332 34577888887 667877776655543
No 288
>KOG2228|consensus
Probab=98.32 E-value=9.2e-06 Score=72.04 Aligned_cols=164 Identities=16% Similarity=0.203 Sum_probs=90.4
Q ss_pred cccccHHHH----HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHH
Q psy17903 46 DVIEQQEVV----SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA 121 (355)
Q Consensus 46 ~~vg~~~~~----~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 121 (355)
.+.|..+.. ..+++.+..|....+++.||.|+|||++............-++-.+.+|+.-..+.-.+.++..++.
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~ 104 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGITRQLA 104 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHHHHHHH
Confidence 355655444 4445555567766699999999999999876665522222233456777765442223333333322
Q ss_pred Hhhc-----cC-CCC-----------CCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHhhhc---cCCccEEEEecCCc--
Q psy17903 122 QQTA-----SG-FNQ-----------DGKPCPPFKIVILDEADSMTHAA-QAALRRTMEKE---TKSTRFCLICNYVS-- 178 (355)
Q Consensus 122 ~~~~-----~~-~~~-----------~~~~~~~~~vliiDe~d~l~~~~-~~~Ll~~le~~---~~~~~~Il~~~~~~-- 178 (355)
.... .+ .+. ++......-+.|+||+|.+.+.. |-.|.++++-. ...+++|..|...+
T Consensus 105 ~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~l 184 (408)
T KOG2228|consen 105 LELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDIL 184 (408)
T ss_pred HHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHH
Confidence 1110 00 000 11111123466778999887644 54555555432 22344455554443
Q ss_pred -cccccccCCee---eEEecCCCHHHHHHHHHHHH
Q psy17903 179 -CIIQPLTSRCS---KFRFKPLAENTMLTRLQYIC 209 (355)
Q Consensus 179 -~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~ 209 (355)
.+-+.++||+. ++-+++.+.++..+++++..
T Consensus 185 E~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 185 ELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 35577889986 34445667788888888765
No 289
>KOG0477|consensus
Probab=98.30 E-value=2.6e-05 Score=74.27 Aligned_cols=205 Identities=15% Similarity=0.188 Sum_probs=113.7
Q ss_pred cccccHHHHHHHHHHHhcCCC------------CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHH-
Q psy17903 46 DVIEQQEVVSVLKKCLSGADL------------PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQV- 112 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~~~~------------~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~- 112 (355)
.+.|+..++..+.-.+-+|.. -|+||+|.||+||+.+.+.+.+...... +...-++...+...
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV----~tTGqGASavGLTa~ 525 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAV----FTTGQGASAVGLTAY 525 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCccee----EeccCCccccceeEE
Confidence 467888888888877755421 1499999999999999999888753221 11111111111100
Q ss_pred -HHH-HHHHH-HHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCccEEEEecC
Q psy17903 113 -IRD-KVKTF-AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-------------TKSTRFCLICNY 176 (355)
Q Consensus 113 -i~~-~i~~~-~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~~Il~~~~ 176 (355)
.+. ...++ ...+.. ..++++|.+|||+|.|+.+....+-+.||+- ...|.+|.++|.
T Consensus 526 v~KdPvtrEWTLEaGAL-------VLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanP 598 (854)
T KOG0477|consen 526 VRKDPVTREWTLEAGAL-------VLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANP 598 (854)
T ss_pred EeeCCccceeeeccCeE-------EEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCC
Confidence 000 00011 011111 1146779999999999987666666666643 234667878775
Q ss_pred C-------------ccccccccCCeeeEE-----ecCCCHHHHHHHHHH-HHHHcC-------C----------CCCHHH
Q psy17903 177 V-------------SCIIQPLTSRCSKFR-----FKPLAENTMLTRLQY-ICEQES-------V----------MCDFKA 220 (355)
Q Consensus 177 ~-------------~~l~~~l~sr~~~i~-----~~~~~~~~~~~~l~~-~~~~~~-------~----------~~~~~~ 220 (355)
. -.+.+++.||+.++. +.+..++.+.+++-. +.+.+. + .++.++
T Consensus 599 igGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~l 678 (854)
T KOG0477|consen 599 IGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQEL 678 (854)
T ss_pred CCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHH
Confidence 2 135688999987432 455555555555433 333211 1 255566
Q ss_pred HHHHHHHc---------CCCHHHH---HHHHHHHHHhhCCCCCCHHHHHHHhC
Q psy17903 221 LETLVETS---------GGDMRRA---ITCLQSCARLKGGEGIVNEDVLEVTG 261 (355)
Q Consensus 221 ~~~l~~~~---------~g~~r~~---~~~l~~~~~~~~~~~It~~~v~~~~~ 261 (355)
+..-+.++ ++|..++ ...|++-+...++-.||..+++.++.
T Consensus 679 LrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir 731 (854)
T KOG0477|consen 679 LRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIR 731 (854)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHH
Confidence 55544332 3333332 33334333333556788888887664
No 290
>PHA02774 E1; Provisional
Probab=98.30 E-value=6.6e-06 Score=78.78 Aligned_cols=138 Identities=23% Similarity=0.319 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCC
Q psy17903 52 EVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130 (355)
Q Consensus 52 ~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 130 (355)
.....|+.++++....+ ++|+||||+|||+++.++++.+.+... ..+|... .|.-.+.
T Consensus 419 ~fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi----~fvN~~s------------~FwLqpl----- 477 (613)
T PHA02774 419 SFLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVI----SFVNSKS------------HFWLQPL----- 477 (613)
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEE----EEEECcc------------ccccchh-----
Confidence 45577788886543334 999999999999999999999854322 1233321 1110111
Q ss_pred CCCCCCCcEEEEEeCCCCCC-HHHHHHHHHHhhhcc-------------CCccEEEEecCC---ccccccccCCeeeEEe
Q psy17903 131 DGKPCPPFKIVILDEADSMT-HAAQAALRRTMEKET-------------KSTRFCLICNYV---SCIIQPLTSRCSKFRF 193 (355)
Q Consensus 131 ~~~~~~~~~vliiDe~d~l~-~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~---~~l~~~l~sr~~~i~~ 193 (355)
.+.+++++||+-.-. .-....|+.+|+..+ ..+.+|+++|-. +.-.+.|.||...+.|
T Consensus 478 -----~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi~~f~F 552 (613)
T PHA02774 478 -----ADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRITVFEF 552 (613)
T ss_pred -----ccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhEEEEEC
Confidence 145699999993322 112346777776432 124577788732 2234668888887766
Q ss_pred cC-------------CCHHHHHHHHHHHHHHcCCC
Q psy17903 194 KP-------------LAENTMLTRLQYICEQESVM 215 (355)
Q Consensus 194 ~~-------------~~~~~~~~~l~~~~~~~~~~ 215 (355)
+. ++......++++...+..+.
T Consensus 553 ~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 553 PNPFPLDENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred CCCCCcCCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 43 34566777777776665443
No 291
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.28 E-value=0.0001 Score=69.26 Aligned_cols=133 Identities=19% Similarity=0.248 Sum_probs=79.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc-cchHHHHHHHHHHHHhhccCCCC
Q psy17903 52 EVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD-RGIQVIRDKVKTFAQQTASGFNQ 130 (355)
Q Consensus 52 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-~~~~~i~~~i~~~~~~~~~~~~~ 130 (355)
+...++.+.+..... .++|+||.+|||||+++.+.+.+... .+.++..+. .......+....+......
T Consensus 24 ~~~~~l~~~~~~~~~-i~~i~GpR~~GKTtll~~l~~~~~~~-----~iy~~~~d~~~~~~~l~d~~~~~~~~~~~---- 93 (398)
T COG1373 24 KLLPRLIKKLDLRPF-IILILGPRQVGKTTLLKLLIKGLLEE-----IIYINFDDLRLDRIELLDLLRAYIELKER---- 93 (398)
T ss_pred hhhHHHHhhcccCCc-EEEEECCccccHHHHHHHHHhhCCcc-----eEEEEecchhcchhhHHHHHHHHHHhhcc----
Confidence 334444444444332 59999999999999998888876443 333333222 1222223333333322111
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCC----ccccccccCCeeeEEecCCCHHHHHH
Q psy17903 131 DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV----SCIIQPLTSRCSKFRFKPLAENTMLT 203 (355)
Q Consensus 131 ~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~----~~l~~~l~sr~~~i~~~~~~~~~~~~ 203 (355)
+...+|+||++.... -+..+..+.+.+.. -++++++.. ....+.+.-|...+.+.|++-.|...
T Consensus 94 ------~~~yifLDEIq~v~~-W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 94 ------EKSYIFLDEIQNVPD-WERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred ------CCceEEEecccCchh-HHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 123899999999853 34445555554433 344444432 34557788888899999999998865
No 292
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.27 E-value=0.00012 Score=67.21 Aligned_cols=108 Identities=16% Similarity=0.184 Sum_probs=65.5
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhhhc--cCCccEEEEecCCccccccc----------------cCC-ee-eEEecCC
Q psy17903 137 PFKIVILDEADSMTHAAQAALRRTMEKE--TKSTRFCLICNYVSCIIQPL----------------TSR-CS-KFRFKPL 196 (355)
Q Consensus 137 ~~~vliiDe~d~l~~~~~~~Ll~~le~~--~~~~~~Il~~~~~~~l~~~l----------------~sr-~~-~i~~~~~ 196 (355)
.+-||||||+|++.++....+++.+... .+++++|++.+.. .+..++ ..+ .+ .+.++++
T Consensus 172 ~~iViiIDdLDR~~~~~i~~~l~~ik~~~~~~~i~~Il~~D~~-~l~~ai~~~~~~~~~~~~~~~yLeKiiq~~~~lP~~ 250 (325)
T PF07693_consen 172 KRIVIIIDDLDRCSPEEIVELLEAIKLLLDFPNIIFILAFDPE-ILEKAIEKNYGEGFDEIDGREYLEKIIQVPFSLPPP 250 (325)
T ss_pred ceEEEEEcchhcCCcHHHHHHHHHHHHhcCCCCeEEEEEecHH-HHHHHHHhhcCcccccccHHHHHHhhcCeEEEeCCC
Confidence 4558999999999998766666555432 2578888888632 111111 111 12 5888999
Q ss_pred CHHHHHHHHHHHHHHcCCCC----C---------------HHHHHHHHH---HcCCCHHHHHHHHHHHHHh
Q psy17903 197 AENTMLTRLQYICEQESVMC----D---------------FKALETLVE---TSGGDMRRAITCLQSCARL 245 (355)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~----~---------------~~~~~~l~~---~~~g~~r~~~~~l~~~~~~ 245 (355)
+..++..++...+....... . ...+..+.. ...+|+|.+.+.+..+..+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~iN~~~~~ 321 (325)
T PF07693_consen 251 SPSDLERYLNELLESLESETNESDDIETLSNSASNENLRIDEILNDIIDSIDFSIGNPRDIKRFINSLSLL 321 (325)
T ss_pred CHHHHHHHHHHHHHHhhhccccccchhhhhhcchhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHHHH
Confidence 99999888888765432211 1 122333333 2357888888877765543
No 293
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.26 E-value=1.5e-05 Score=83.26 Aligned_cols=146 Identities=16% Similarity=0.253 Sum_probs=98.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccC--CCCCC--CCCCCcEEEEEe
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASG--FNQDG--KPCPPFKIVILD 144 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~--~~~~~--~~~~~~~vliiD 144 (355)
+||.||+.+|||+.+..+++... ..++.+|--+. .++++.+..+....... +..+. ....++.-||+|
T Consensus 891 ~LiQGpTSSGKTSMI~yla~~tg-----hkfVRINNHEH---TdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLD 962 (4600)
T COG5271 891 LLIQGPTSSGKTSMILYLARETG-----HKFVRINNHEH---TDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLD 962 (4600)
T ss_pred EEEecCCCCCcchHHHHHHHHhC-----ccEEEecCccc---chHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEee
Confidence 99999999999999999999973 35666665432 23334444433221110 00000 000133479999
Q ss_pred CCCCCCHHHHHHHHHHhhhc--------------cCCccEEEEecC-C------ccccccccCCeeeEEecCCCHHHHHH
Q psy17903 145 EADSMTHAAQAALRRTMEKE--------------TKSTRFCLICNY-V------SCIIQPLTSRCSKFRFKPLAENTMLT 203 (355)
Q Consensus 145 e~d~l~~~~~~~Ll~~le~~--------------~~~~~~Il~~~~-~------~~l~~~l~sr~~~i~~~~~~~~~~~~ 203 (355)
|....+.+..++|.++|++. +++.. +|+|.+ + ..+..+++.|+..++|...+++++..
T Consensus 963 ELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~-lFATQNppg~YgGRK~LSrAFRNRFlE~hFddipedEle~ 1041 (4600)
T COG5271 963 ELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFR-LFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIPEDELEE 1041 (4600)
T ss_pred ccccCcHHHHHHHHHhhccccceecCCcceeeccCCCee-EEeecCCCccccchHHHHHHHHhhhHhhhcccCcHHHHHH
Confidence 99999999999999998752 33333 445543 3 23678999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHc
Q psy17903 204 RLQYICEQESVMCDFKALETLVETS 228 (355)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~l~~~~ 228 (355)
++.. +.++.+.-+..+++..
T Consensus 1042 ILh~-----rc~iapSyakKiVeVy 1061 (4600)
T COG5271 1042 ILHG-----RCEIAPSYAKKIVEVY 1061 (4600)
T ss_pred HHhc-----cCccCHHHHHHHHHHH
Confidence 9984 4567787777777654
No 294
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.26 E-value=8.7e-07 Score=81.17 Aligned_cols=139 Identities=21% Similarity=0.220 Sum_probs=69.5
Q ss_pred cccccHHHHHHHHHHHhcCC------------CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc--cchH
Q psy17903 46 DVIEQQEVVSVLKKCLSGAD------------LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD--RGIQ 111 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~~~------------~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--~~~~ 111 (355)
.+.|++.++..+.=.+-++. .-|+||.|.||+|||.+.+.+++-... .+..++... .+..
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr------~v~~~g~~~s~~gLt 98 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR------SVYTSGKGSSAAGLT 98 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS------EEEEECCGSTCCCCC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc------eEEECCCCcccCCcc
Confidence 46788877765543332211 125999999999999999877544321 112221110 0000
Q ss_pred --HHHHH-HHHHH-HhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc-------------cCCccEEEEe
Q psy17903 112 --VIRDK-VKTFA-QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-------------TKSTRFCLIC 174 (355)
Q Consensus 112 --~i~~~-i~~~~-~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-------------~~~~~~Il~~ 174 (355)
..++. -..+. ..+.. ..+++++++|||+|.+..+....|.+.||.. +..+.++.++
T Consensus 99 a~~~~d~~~~~~~leaGal-------vlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~ 171 (331)
T PF00493_consen 99 ASVSRDPVTGEWVLEAGAL-------VLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAA 171 (331)
T ss_dssp EEECCCGGTSSECEEE-HH-------HHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE
T ss_pred ceeccccccceeEEeCCch-------hcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHH
Confidence 00000 00000 00000 0025569999999999999999999999963 2346677777
Q ss_pred cCCc-------------cccccccCCeeeEE--ecCCC
Q psy17903 175 NYVS-------------CIIQPLTSRCSKFR--FKPLA 197 (355)
Q Consensus 175 ~~~~-------------~l~~~l~sr~~~i~--~~~~~ 197 (355)
|... .+.++|.+|+..+. ...++
T Consensus 172 NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d 209 (331)
T PF00493_consen 172 NPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPD 209 (331)
T ss_dssp --TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT
T ss_pred hhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccc
Confidence 7432 24578889988443 34555
No 295
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.25 E-value=3.6e-06 Score=63.88 Aligned_cols=72 Identities=21% Similarity=0.413 Sum_probs=45.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCc---cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDM---YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~---~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe 145 (355)
+.|+||+|+|||++++.+++.+.... ....++..+..+. ....+. +.+++++||
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~--------~w~gY~---------------~q~vvi~DD 57 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDK--------FWDGYQ---------------GQPVVIIDD 57 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccc--------hhhccC---------------CCcEEEEee
Confidence 57999999999999999999886422 1122333233221 111111 234999999
Q ss_pred CCCCCHH----HHHHHHHHhhh
Q psy17903 146 ADSMTHA----AQAALRRTMEK 163 (355)
Q Consensus 146 ~d~l~~~----~~~~Ll~~le~ 163 (355)
+.....+ ....+++++..
T Consensus 58 ~~~~~~~~~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 58 FGQDNDGYNYSDESELIRLISS 79 (107)
T ss_pred cCccccccchHHHHHHHHHHhc
Confidence 9988754 45566666653
No 296
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.23 E-value=0.00036 Score=69.31 Aligned_cols=190 Identities=18% Similarity=0.189 Sum_probs=111.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHH
Q psy17903 40 RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (355)
Q Consensus 40 ~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 119 (355)
+|......+-++...+.|.+.. ...-++|+-|.|+||||++-.++. ...+..+...+.++.++.....-+...+..
T Consensus 14 ~P~~~~~~v~R~rL~~~L~~~~---~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wlslde~dndp~rF~~yLi~a 89 (894)
T COG2909 14 RPVRPDNYVVRPRLLDRLRRAN---DYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLSLDESDNDPARFLSYLIAA 89 (894)
T ss_pred CCCCcccccccHHHHHHHhcCC---CceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEeecCCccCCHHHHHHHHHHH
Confidence 3444556666665555444331 223399999999999999999988 444444445556665553222222222111
Q ss_pred HHHhhcc---------CCCC-------------CCCCCCCcEEEEEeCCCCCCHHHH-HHHHHHhhhccCCccEEEEecC
Q psy17903 120 FAQQTAS---------GFNQ-------------DGKPCPPFKIVILDEADSMTHAAQ-AALRRTMEKETKSTRFCLICNY 176 (355)
Q Consensus 120 ~~~~~~~---------~~~~-------------~~~~~~~~~vliiDe~d~l~~~~~-~~Ll~~le~~~~~~~~Il~~~~ 176 (355)
....... .... +-..+.+.=.+||||.|.++.... ..+...++..|.++++|++|..
T Consensus 90 l~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~ 169 (894)
T COG2909 90 LQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRS 169 (894)
T ss_pred HHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEecc
Confidence 1100000 0000 000001122899999999987654 5566667777889999999875
Q ss_pred Cccc-cccccCCeeeEEe----cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Q psy17903 177 VSCI-IQPLTSRCSKFRF----KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236 (355)
Q Consensus 177 ~~~l-~~~l~sr~~~i~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~ 236 (355)
...+ ...++=|...+++ -.++.+|..+++... .+..++...++.|...++|=+..+.
T Consensus 170 rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~---~~l~Ld~~~~~~L~~~teGW~~al~ 231 (894)
T COG2909 170 RPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDR---GSLPLDAADLKALYDRTEGWAAALQ 231 (894)
T ss_pred CCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHc---CCCCCChHHHHHHHhhcccHHHHHH
Confidence 4332 3334433332222 145678888877754 4588999999999999988665443
No 297
>PTZ00202 tuzin; Provisional
Probab=98.22 E-value=8e-05 Score=69.12 Aligned_cols=52 Identities=23% Similarity=0.303 Sum_probs=43.6
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcCCCC--e-EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 40 RPKTIDDVIEQQEVVSVLKKCLSGADLP--H-FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 40 ~p~~~~~~vg~~~~~~~l~~~l~~~~~~--~-~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
-|....+++|++....+|...+...... . +.|+|++|+|||++++.+...+.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4666778999999999999999754432 2 89999999999999999998763
No 298
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.18 E-value=6.3e-05 Score=78.88 Aligned_cols=227 Identities=13% Similarity=0.167 Sum_probs=131.9
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH-H-----HHH--HHhhcc
Q psy17903 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK-V-----KTF--AQQTAS 126 (355)
Q Consensus 55 ~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-i-----~~~--~~~~~~ 126 (355)
.++.+++.-++ .+++.|.||+|||+++.++|+..+. ..+.+|-++.+..-++... + .+| ...+..
T Consensus 1534 ~rVlRAmqv~k--pilLEGsPGVGKTSlItaLAr~tG~-----kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL 1606 (4600)
T COG5271 1534 RRVLRAMQVGK--PILLEGSPGVGKTSLITALARKTGK-----KLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFL 1606 (4600)
T ss_pred HHHHHHHhcCC--ceeecCCCCccHHHHHHHHHHHhcC-----ceEEeeccccchHHHHhCCCCCcccCceeEecccHHH
Confidence 34445555443 4899999999999999999999844 4556665554332211100 0 000 000000
Q ss_pred CCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc--------------cCCccEEEEecCC-------cccccccc
Q psy17903 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE--------------TKSTRFCLICNYV-------SCIIQPLT 185 (355)
Q Consensus 127 ~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~--------------~~~~~~Il~~~~~-------~~l~~~l~ 185 (355)
... .++.-|++||+...+....+.|...|+.. +++.++ |++.+| .-+.+.+.
T Consensus 1607 ~am------r~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrV-FAaqNPq~qggGRKgLPkSF~ 1679 (4600)
T COG5271 1607 HAM------RDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRV-FAAQNPQDQGGGRKGLPKSFL 1679 (4600)
T ss_pred HHh------hcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeee-eeecCchhcCCCcccCCHHHh
Confidence 000 13457999999999888888887777632 234444 444333 23677899
Q ss_pred CCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---------------cCC-----CHHHHHHHHHHHHHh
Q psy17903 186 SRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET---------------SGG-----DMRRAITCLQSCARL 245 (355)
Q Consensus 186 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~---------------~~g-----~~r~~~~~l~~~~~~ 245 (355)
.|+.+|.+..++.+++..+...... ++.++..-.++.. +.| |+|..++.+..+-.+
T Consensus 1680 nRFsvV~~d~lt~dDi~~Ia~~~yp----~v~~d~~~kiik~ms~lqd~i~k~~~~g~~gsPwefnlrdTLRwl~llNq~ 1755 (4600)
T COG5271 1680 NRFSVVKMDGLTTDDITHIANKMYP----QVNEDWRLKIIKFMSRLQDNIEKDISFGSFGSPWEFNLRDTLRWLILLNQV 1755 (4600)
T ss_pred hhhheEEecccccchHHHHHHhhCC----ccChHHHHHHHHHHHHHHHhhhhhhcccCCCCCeEEehHHHHHHHHHhhcc
Confidence 9999999999999999888775532 3445444333322 112 577777777766554
Q ss_pred hCCCCCCHHHHHHHhCCCChHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 246 KGGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVM 306 (355)
Q Consensus 246 ~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~ 306 (355)
..-..++..++.+.+- ...+-...|.-++..++.+++. .|++..+.-.+...+.
T Consensus 1756 ~~~edvd~~dfid~~V------~~r~rtv~dr~rt~~l~~evfg-~~~~r~~~f~ls~~~~ 1809 (4600)
T COG5271 1756 GTLEDVDTSDFIDESV------VRRMRTVEDRVRTCELFKEVFG-DYEPRTIGFSLSSQCF 1809 (4600)
T ss_pred CccccCCHHHHHHHHH------HHHhhhHhhhhHHHHHHHHHhc-ccCcccccccchhhHh
Confidence 4334455555443221 1111111455566677777765 5666666655555444
No 299
>PRK10536 hypothetical protein; Provisional
Probab=98.14 E-value=6.3e-05 Score=65.38 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=33.7
Q ss_pred CCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHH
Q psy17903 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 44 ~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+..+.+.......+..++... ..+++.||+|||||+++.+++.+
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~--~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK--QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC--CeEEEECCCCCCHHHHHHHHHHH
Confidence 344556666666666677653 36999999999999999999985
No 300
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.13 E-value=1.9e-05 Score=60.68 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=40.0
Q ss_pred cccccHHHHHHHHHH----HhcCCCCe---EEEECCCCCCHHHHHHHHHHHhcCCccccceee
Q psy17903 46 DVIEQQEVVSVLKKC----LSGADLPH---FLFYGPPGTGKTSTMIAACHQLFGDMYRERILE 101 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~----l~~~~~~~---~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~ 101 (355)
.+.||.-+.+.+.+. +.+..... +-|+|++|||||.+++.+++.++....+..++.
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~ 88 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVH 88 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCcee
Confidence 578888666555444 44433222 669999999999999999999887655555543
No 301
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.05 E-value=9.4e-06 Score=74.88 Aligned_cols=116 Identities=19% Similarity=0.191 Sum_probs=64.9
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCcc-ccceeee----cCCC--c-cchHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMY-RERILEL----NASD--D-RGIQVIRDKVKTFAQQTASGFNQDGKPCPPF 138 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~~~~-~~~~~~~----~~~~--~-~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 138 (355)
.+++|||+.|+|||.+...+...+..... ...+.++ ...- . ...+.+......++. +.
T Consensus 63 ~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~--------------~~ 128 (362)
T PF03969_consen 63 KGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAK--------------ES 128 (362)
T ss_pred ceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHh--------------cC
Confidence 34999999999999999999998754211 1111000 0000 0 000111112222221 34
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhc-cCCccEEEEecCC-cc-------------ccccccCCeeeEEecCC
Q psy17903 139 KIVILDEADSMTHAAQAALRRTMEKE-TKSTRFCLICNYV-SC-------------IIQPLTSRCSKFRFKPL 196 (355)
Q Consensus 139 ~vliiDe~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~-~~-------------l~~~l~sr~~~i~~~~~ 196 (355)
++|++||++.-.....-.|.++++.. ...+++|.|+|.+ +. .+..|+++|.++++...
T Consensus 129 ~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 129 RLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred CEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 59999999876554433333333321 3567788888753 22 24567899999988765
No 302
>PHA02624 large T antigen; Provisional
Probab=98.05 E-value=2.7e-05 Score=75.00 Aligned_cols=116 Identities=22% Similarity=0.273 Sum_probs=69.3
Q ss_pred HHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCC
Q psy17903 55 SVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133 (355)
Q Consensus 55 ~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 133 (355)
..++.++++-...+ ++|+||+|+|||+++.++++.+.+. .+.+|++..... |--.+.
T Consensus 419 ~~lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~-----vlsVNsPt~ks~---------FwL~pl-------- 476 (647)
T PHA02624 419 DILKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGK-----SLNVNCPPDKLN---------FELGCA-------- 476 (647)
T ss_pred HHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCe-----EEEeeCCcchhH---------HHhhhh--------
Confidence 34444444433334 9999999999999999999999543 445665542111 111111
Q ss_pred CCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhhhc-c-------CC------ccEEEEecCCccccccccCCe
Q psy17903 134 PCPPFKIVILDEADSMTH-----------AAQAALRRTMEKE-T-------KS------TRFCLICNYVSCIIQPLTSRC 188 (355)
Q Consensus 134 ~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~-~-------~~------~~~Il~~~~~~~l~~~l~sr~ 188 (355)
.+.+++++||+-.-.. +....|+..|+-. + .+ +.+|+|+| ...+..+++-|+
T Consensus 477 --~D~~~~l~dD~t~~~~~~~~Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~N-ey~iP~T~~~Rf 553 (647)
T PHA02624 477 --IDQFMVVFEDVKGQPADNKDLPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMN-EYLIPQTVKARF 553 (647)
T ss_pred --hhceEEEeeeccccccccccCCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeec-CcccchhHHHHH
Confidence 1446999999953221 2235677777643 1 11 23455554 445667888887
Q ss_pred e-eEEecC
Q psy17903 189 S-KFRFKP 195 (355)
Q Consensus 189 ~-~i~~~~ 195 (355)
. .+.|.+
T Consensus 554 ~~~~~F~~ 561 (647)
T PHA02624 554 AKVLDFKP 561 (647)
T ss_pred HHhccccc
Confidence 6 677754
No 303
>PRK04296 thymidine kinase; Provisional
Probab=98.03 E-value=3.8e-05 Score=64.66 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=51.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC-C-c---------cch-------HHHHHHHHHHHHhhccCCCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS-D-D---------RGI-------QVIRDKVKTFAQQTASGFNQ 130 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~-~-~---------~~~-------~~i~~~i~~~~~~~~~~~~~ 130 (355)
.+++||+|+|||+++..++..+..... .++.+.+. + . .+. ....+.+..+.. .
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~~g~--~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~----- 75 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEERGM--KVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--E----- 75 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHcCC--eEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--h-----
Confidence 689999999999999988887744322 22222210 0 0 000 011111111111 0
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecC
Q psy17903 131 DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (355)
Q Consensus 131 ~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 176 (355)
. .+..+|+|||++.+..+....|.+.+.. ....+|+++..
T Consensus 76 ~----~~~dvviIDEaq~l~~~~v~~l~~~l~~--~g~~vi~tgl~ 115 (190)
T PRK04296 76 G----EKIDCVLIDEAQFLDKEQVVQLAEVLDD--LGIPVICYGLD 115 (190)
T ss_pred C----CCCCEEEEEccccCCHHHHHHHHHHHHH--cCCeEEEEecC
Confidence 0 1345999999999987766666666653 33445555543
No 304
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.95 E-value=0.00057 Score=62.04 Aligned_cols=48 Identities=19% Similarity=0.229 Sum_probs=38.8
Q ss_pred eEEecCCCHHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHcCCCHHHHHH
Q psy17903 190 KFRFKPLAENTMLTRLQYICEQESV---MCDFKALETLVETSGGDMRRAIT 237 (355)
Q Consensus 190 ~i~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~l~~~~~g~~r~~~~ 237 (355)
.+++++++.+|+..++.......-+ ..++...+.+...++||+|++.+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~k 308 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELEK 308 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhcc
Confidence 7899999999999999988775433 35667788888888999998753
No 305
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=97.92 E-value=0.0002 Score=62.83 Aligned_cols=185 Identities=18% Similarity=0.127 Sum_probs=98.8
Q ss_pred CCCcccccHHH---HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHH
Q psy17903 43 TIDDVIEQQEV---VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT 119 (355)
Q Consensus 43 ~~~~~vg~~~~---~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~ 119 (355)
...++++-+.. ...+.-.-+.|. -..+||.+|.|||..++.++..-.. ..+.+.+.+. ....+...+..
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~--l~~vyg~~g~gKt~a~~~y~~s~p~----~~l~~~~p~~--~a~~~i~~i~~ 141 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGS--LVVVYGYAGLGKTQAAKNYAPSNPN----ALLIEADPSY--TALVLILIICA 141 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCc--eEEEeccccchhHHHHHhhcccCcc----ceeecCChhh--HHHHHHHHHHH
Confidence 44566766554 333333434443 4799999999999999999987421 1122222221 11111111100
Q ss_pred HHHhhc-----------cCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCC-cc-------c
Q psy17903 120 FAQQTA-----------SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV-SC-------I 180 (355)
Q Consensus 120 ~~~~~~-----------~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~-~~-------l 180 (355)
...... .... . ...++|++||+++|...+.+.|++..++... -+++.+++. .+ .
T Consensus 142 ~~~~~~~~~~~d~~~~~~~~l-~----~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi--~~vLvG~prL~~~l~~~~~~ 214 (297)
T COG2842 142 AAFGATDGTINDLTERLMIRL-R----DTVRLIIVDEADRLPYRALEELRRIHDKTGI--GVVLVGMPRLFKVLRRPEDE 214 (297)
T ss_pred HHhcccchhHHHHHHHHHHHH-c----cCcceeeeehhhccChHHHHHHHHHHHhhCc--eEEEecChHHHhccccchHH
Confidence 000000 0000 0 1345999999999999999999999886554 344455433 11 1
Q ss_pred cccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh
Q psy17903 181 IQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK 246 (355)
Q Consensus 181 ~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~ 246 (355)
...+.+|.. .+....++.++...+..... ....++.+..+....+|++|.+...+.-+...+
T Consensus 215 ~~rl~srv~v~~~~~~~~~d~d~~~~~~~~~l----~~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~~a 279 (297)
T COG2842 215 LSRLYSRVRVGKLLGEKFPDADELAEIAALVL----PTEDELVLMQVIKETEGNIRRLDKILAGAVGTA 279 (297)
T ss_pred HHHHHHHhhhHhhhhhhhhhhHHHHHHHHhhC----ccchHHHHHHHHHhcchhHhHHHHHHhhhhhhh
Confidence 112223222 11112222233333333221 124667777788888999999998887666554
No 306
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.90 E-value=2.5e-05 Score=72.43 Aligned_cols=92 Identities=18% Similarity=0.276 Sum_probs=52.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh--cCCccccceeeecCCCccchHHHHHHHHHHH----------Hh-hccC-CCCCCCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL--FGDMYRERILELNASDDRGIQVIRDKVKTFA----------QQ-TASG-FNQDGKP 134 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l--~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~----------~~-~~~~-~~~~~~~ 134 (355)
++|.|.||||||.+|-.+++.+ ........++..|.... ..++..+.... .. .... .......
T Consensus 4 ~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~---~~l~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLR---NKLREQLAKKYNPKLKKSDFRKPTSFINNYSESDKE 80 (352)
T ss_pred EEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHH---HHHHHHHhhhcccchhhhhhhhhHHHHhhccccccc
Confidence 7999999999999999999998 33333333444444321 22222221111 00 0000 0000111
Q ss_pred CCCcEEEEEeCCCCCCHH--------HHHHHHHHhhh
Q psy17903 135 CPPFKIVILDEADSMTHA--------AQAALRRTMEK 163 (355)
Q Consensus 135 ~~~~~vliiDe~d~l~~~--------~~~~Ll~~le~ 163 (355)
...+.+|||||+|+|... ..+.|..++..
T Consensus 81 ~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 81 KNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred CCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 136679999999999872 23567777765
No 307
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.88 E-value=0.00019 Score=60.65 Aligned_cols=99 Identities=18% Similarity=0.208 Sum_probs=65.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~ 148 (355)
++|.|+-|+|||++.+.|......+.. ... ...+.. ..+... -++.+||++.
T Consensus 55 lvl~G~QG~GKStf~~~L~~~~~~d~~-------~~~--~~kd~~----~~l~~~---------------~iveldEl~~ 106 (198)
T PF05272_consen 55 LVLVGKQGIGKSTFFRKLGPEYFSDSI-------NDF--DDKDFL----EQLQGK---------------WIVELDELDG 106 (198)
T ss_pred eeEecCCcccHHHHHHHHhHHhccCcc-------ccC--CCcHHH----HHHHHh---------------HheeHHHHhh
Confidence 899999999999999999666432211 111 111211 122111 1899999999
Q ss_pred CCHHHHHHHHHHhhh---------------ccCCccEEEEecCCccc-cccccCCeeeEEecC
Q psy17903 149 MTHAAQAALRRTMEK---------------ETKSTRFCLICNYVSCI-IQPLTSRCSKFRFKP 195 (355)
Q Consensus 149 l~~~~~~~Ll~~le~---------------~~~~~~~Il~~~~~~~l-~~~l~sr~~~i~~~~ 195 (355)
+.....+.|..++.. .+..++||.+||..+-+ +++=-+|+..|++..
T Consensus 107 ~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 107 LSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred cchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 998888888777742 34567888889886644 345667777777765
No 308
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.87 E-value=0.00012 Score=59.60 Aligned_cols=24 Identities=29% Similarity=0.618 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|+||+|+|||+++..++.....
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~ 25 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT 25 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh
Confidence 689999999999999999998743
No 309
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.87 E-value=0.00012 Score=68.10 Aligned_cols=139 Identities=14% Similarity=0.213 Sum_probs=69.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC----CccccceeeecCCCccchHHHHHHHHHHHHh---hccCCCC-C-----CCCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG----DMYRERILELNASDDRGIQVIRDKVKTFAQQ---TASGFNQ-D-----GKPC 135 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~----~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~---~~~~~~~-~-----~~~~ 135 (355)
++|+||+|+||||++..++..+.. ......++..|+........ +..++.. +...... . -...
T Consensus 177 i~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQ----L~~~a~~lgvpv~~~~~~~~l~~~L~~~ 252 (388)
T PRK12723 177 FILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQ----IQTYGDIMGIPVKAIESFKDLKEEITQS 252 (388)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHH----HHHHhhcCCcceEeeCcHHHHHHHHHHh
Confidence 999999999999999999987642 22333444544432212221 2222211 0000000 0 0000
Q ss_pred CCcEEEEEeCCCCCCHHH--HHHHHHHhhhcc--CCccEEEEecCCccccccccCC-----eeeEEecCCCHHHHHHHHH
Q psy17903 136 PPFKIVILDEADSMTHAA--QAALRRTMEKET--KSTRFCLICNYVSCIIQPLTSR-----CSKFRFKPLAENTMLTRLQ 206 (355)
Q Consensus 136 ~~~~vliiDe~d~l~~~~--~~~Ll~~le~~~--~~~~~Il~~~~~~~l~~~l~sr-----~~~i~~~~~~~~~~~~~l~ 206 (355)
.++.+|+||.+.++..+. ...+..+++... ..+.+|+.++....-...+..+ ...+-|..+++..-...+-
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~~l 332 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLI 332 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcchHHH
Confidence 255699999999987542 355666665432 2455666554332211112111 1245566666655444444
Q ss_pred HHHHH
Q psy17903 207 YICEQ 211 (355)
Q Consensus 207 ~~~~~ 211 (355)
..+..
T Consensus 333 ~~~~~ 337 (388)
T PRK12723 333 SLIYE 337 (388)
T ss_pred HHHHH
Confidence 44443
No 310
>KOG4658|consensus
Probab=97.87 E-value=0.00024 Score=73.04 Aligned_cols=187 Identities=11% Similarity=0.049 Sum_probs=107.0
Q ss_pred cccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC--Cccc-cceeeecCCCccchHHHHHHHHH-HHHh
Q psy17903 48 IEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG--DMYR-ERILELNASDDRGIQVIRDKVKT-FAQQ 123 (355)
Q Consensus 48 vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~--~~~~-~~~~~~~~~~~~~~~~i~~~i~~-~~~~ 123 (355)
+|++..++.+.+.+-......+=+||..|+||||+++.+.+.... ..++ ...+.++. ......+...+-. +...
T Consensus 161 VG~e~~~~kl~~~L~~d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk--~f~~~~iq~~Il~~l~~~ 238 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSK--EFTTRKIQQTILERLGLL 238 (889)
T ss_pred ccHHHHHHHHHHHhccCCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcc--cccHHhHHHHHHHHhccC
Confidence 999999999999887766656999999999999999999998741 1111 11122222 2222222222211 1000
Q ss_pred hccCC-------------CCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeee
Q psy17903 124 TASGF-------------NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190 (355)
Q Consensus 124 ~~~~~-------------~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 190 (355)
..... .-.+ ++-+|++||+ ..+.....+...+........+++||....--..+.. ++..
T Consensus 239 ~~~~~~~~~~~~~~~i~~~L~~----krfllvLDDI--W~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~-~~~~ 311 (889)
T KOG4658|consen 239 DEEWEDKEEDELASKLLNLLEG----KRFLLVLDDI--WEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG-VDYP 311 (889)
T ss_pred CcccchhhHHHHHHHHHHHhcc----CceEEEEecc--cccccHHhcCCCCCCccCCeEEEEEeccHhhhhcccc-CCcc
Confidence 00000 0001 3449999998 3333333443333333334778888875543222222 2456
Q ss_pred EEecCCCHHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy17903 191 FRFKPLAENTMLTRLQYICEQESVMC---DFKALETLVETSGGDMRRAITCLQSCA 243 (355)
Q Consensus 191 i~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~~l~~~~~g~~r~~~~~l~~~~ 243 (355)
++..-++.++.=..+++.+-.....- -++....++..|+|-+-.+.-.-..++
T Consensus 312 ~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma 367 (889)
T KOG4658|consen 312 IEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLA 367 (889)
T ss_pred ccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhc
Confidence 67777788888777777764432222 256777788899888876655544433
No 311
>KOG0481|consensus
Probab=97.84 E-value=0.0013 Score=61.73 Aligned_cols=106 Identities=22% Similarity=0.308 Sum_probs=63.4
Q ss_pred cccccHHHHHHHHHHHhcCCC------------CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC--CCccchH
Q psy17903 46 DVIEQQEVVSVLKKCLSGADL------------PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA--SDDRGIQ 111 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~~~~------------~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~--~~~~~~~ 111 (355)
.+.|+.++++.+.=.+-+|.. -++|+.|.||+.|+.+.+.+-+-. . -.++-++ +...+..
T Consensus 332 SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvs-----P-IaVYTSGKGSSAAGLT 405 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVS-----P-IAVYTSGKGSSAAGLT 405 (729)
T ss_pred hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcC-----c-eEEEecCCCcccccce
Confidence 467899998888877755421 139999999999999998876553 1 1122222 1111110
Q ss_pred --HHHHHH-HHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhh
Q psy17903 112 --VIRDKV-KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEK 163 (355)
Q Consensus 112 --~i~~~i-~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~ 163 (355)
.+++-. .+|...+ +....++++|++|||+|.|.++..-++-+.||.
T Consensus 406 ASV~RD~~tReFylEG------GAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQ 454 (729)
T KOG0481|consen 406 ASVIRDPSTREFYLEG------GAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQ 454 (729)
T ss_pred eeEEecCCcceEEEec------ceEEEecCCEEEeehhhccCchhhhHHHHHHHh
Confidence 111000 0110000 001114667999999999999888888888875
No 312
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.81 E-value=6.6e-05 Score=63.39 Aligned_cols=108 Identities=13% Similarity=0.197 Sum_probs=56.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCC------------CCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK------------PCP 136 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~------------~~~ 136 (355)
++|.||+|+||||.+-.++..+.....+..++..|.......+.++...+.+. .+......... ...
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~-vp~~~~~~~~~~~~~~~~~l~~~~~~ 82 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG-VPFYVARTESDPAEIAREALEKFRKK 82 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT-EEEEESSTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc-cccchhhcchhhHHHHHHHHHHHhhc
Confidence 89999999999999999998876554444455555443333333322221111 01000000000 001
Q ss_pred CcEEEEEeCCCCCCHH--HHHHHHHHhhhc-cCCccEEEEecCC
Q psy17903 137 PFKIVILDEADSMTHA--AQAALRRTMEKE-TKSTRFCLICNYV 177 (355)
Q Consensus 137 ~~~vliiDe~d~l~~~--~~~~Ll~~le~~-~~~~~~Il~~~~~ 177 (355)
+..+|+||=+.+...+ ....|.++++.. +..+.+++.++..
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~ 126 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG 126 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC
Confidence 3459999999877643 345555555543 4456666666543
No 313
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.81 E-value=0.00097 Score=59.06 Aligned_cols=152 Identities=16% Similarity=0.260 Sum_probs=89.0
Q ss_pred cccccHHHHHHHHH---HHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHH
Q psy17903 46 DVIEQQEVVSVLKK---CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ 122 (355)
Q Consensus 46 ~~vg~~~~~~~l~~---~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 122 (355)
+++--+++++.+.+ .+...+ .|.|+.|..|+||.++++..+.-. +..++.+......+..+.++.++....
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~-Gh~LLvG~~GsGr~sl~rLaa~i~-----~~~~~~i~~~~~y~~~~f~~dLk~~~~ 82 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPR-GHALLVGVGGSGRQSLARLAAFIC-----GYEVFQIEITKGYSIKDFKEDLKKALQ 82 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTT-EEEEEECTTTSCHHHHHHHHHHHT-----TEEEE-TTTSTTTHHHHHHHHHHHHHH
T ss_pred ceeeHHHHHHHHHHHHHHHcCCC-CCeEEecCCCccHHHHHHHHHHHh-----ccceEEEEeeCCcCHHHHHHHHHHHHH
Confidence 34555566655544 444332 469999999999999999776654 345666666665666677666666543
Q ss_pred hhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHH---------------------HHH---------------------H
Q psy17903 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAA---------------------LRR---------------------T 160 (355)
Q Consensus 123 ~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~---------------------Ll~---------------------~ 160 (355)
..... + ...+++++|.+.......+. +.. +
T Consensus 83 ~ag~~----~----~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F 154 (268)
T PF12780_consen 83 KAGIK----G----KPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFF 154 (268)
T ss_dssp HHHCS---------S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHH
T ss_pred HHhcc----C----CCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHH
Confidence 32211 1 23478888876553321111 111 1
Q ss_pred hhhccCCccEEEEecCCc-------cccccccCCeeeEEecCCCHHHHHHHHHHHHHH
Q psy17903 161 MEKETKSTRFCLICNYVS-------CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211 (355)
Q Consensus 161 le~~~~~~~~Il~~~~~~-------~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~ 211 (355)
+++-..+..+|++-+... +..|+|.++|.+..|.+.+.+.+..+-...+..
T Consensus 155 ~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 155 IERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp HHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred HHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 122335566777665432 246889999999999999999988887766544
No 314
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=97.80 E-value=0.00021 Score=59.34 Aligned_cols=44 Identities=27% Similarity=0.362 Sum_probs=35.9
Q ss_pred ccHHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 49 EQQEVVSVLKKCLSGA-DLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~-~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.|.+++..+.+.+... ..++++|.+|+|+|||.++-.++..+..
T Consensus 7 ~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~ 51 (184)
T PF04851_consen 7 YQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR 51 (184)
T ss_dssp HHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc
Confidence 4677788888888776 5567999999999999999987777653
No 315
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.78 E-value=0.00073 Score=58.43 Aligned_cols=131 Identities=13% Similarity=0.190 Sum_probs=72.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc---------------cchHHHH-------HHHHHHHHhhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD---------------RGIQVIR-------DKVKTFAQQTA 125 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~---------------~~~~~i~-------~~i~~~~~~~~ 125 (355)
.+++.|++|+|||+++..+...+..... .++-+..... ...+.+. +.+........
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~--~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFD--HIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCC--EEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3899999999999999999987654321 1111111100 0111111 11122221111
Q ss_pred cCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc-cCCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHH
Q psy17903 126 SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-TKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTR 204 (355)
Q Consensus 126 ~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~ 204 (355)
. .+ ...+-+||+||+..-. -....+..++..+ +-++-+|+.+.....+.+.+|..+..+-+-+.+..++.-+
T Consensus 93 ~-----~k-~~~~~LiIlDD~~~~~-~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~~i 165 (241)
T PF04665_consen 93 Q-----KK-NNPRFLIILDDLGDKK-LKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLENI 165 (241)
T ss_pred c-----cC-CCCCeEEEEeCCCCch-hhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHHHH
Confidence 0 11 1135599999986521 1223455555443 3456677788888888888988777554335676666544
Q ss_pred HHH
Q psy17903 205 LQY 207 (355)
Q Consensus 205 l~~ 207 (355)
++.
T Consensus 166 ~~~ 168 (241)
T PF04665_consen 166 YRN 168 (241)
T ss_pred HHh
Confidence 443
No 316
>KOG3347|consensus
Probab=97.73 E-value=1.6e-05 Score=62.20 Aligned_cols=26 Identities=31% Similarity=0.556 Sum_probs=23.7
Q ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 65 DLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 65 ~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
..|++|++|.||+||||++.+++..+
T Consensus 6 ~~PNILvtGTPG~GKstl~~~lae~~ 31 (176)
T KOG3347|consen 6 ERPNILVTGTPGTGKSTLAERLAEKT 31 (176)
T ss_pred cCCCEEEeCCCCCCchhHHHHHHHHh
Confidence 35779999999999999999999887
No 317
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.72 E-value=6.2e-05 Score=63.55 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecC
Q psy17903 138 FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (355)
Q Consensus 138 ~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 176 (355)
..+|||||++++++.....++.. ...++.+|++++.
T Consensus 120 ~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~ 155 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDP 155 (205)
T ss_dssp SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE--
T ss_pred ceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCc
Confidence 36999999999998776555444 4567788888864
No 318
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.72 E-value=0.0051 Score=63.47 Aligned_cols=104 Identities=13% Similarity=0.101 Sum_probs=71.8
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhcc-----CCccEEEEecCCccccccccCC--eeeEEecCCCHHHHHHHHHHHHHH
Q psy17903 139 KIVILDEADSMTHAAQAALRRTMEKET-----KSTRFCLICNYVSCIIQPLTSR--CSKFRFKPLAENTMLTRLQYICEQ 211 (355)
Q Consensus 139 ~vliiDe~d~l~~~~~~~Ll~~le~~~-----~~~~~Il~~~~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~~~ 211 (355)
-|+|+||+|...+...+.|-..|.+-+ .+.+++..+.. ..+.+..++. ...+.+.|++..+....+...+..
T Consensus 156 lVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~-~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~ 234 (849)
T COG3899 156 LVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLR-PTLGEILKSATNITTITLAPLSRADTNQLVAATLGC 234 (849)
T ss_pred eEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCcc-chhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCC
Confidence 499999999999888887777777554 11222211111 1111222222 347999999999999999988764
Q ss_pred cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 212 ~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
......+..+.+.+.+.||+-=+.+.++.+..
T Consensus 235 -~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~~ 266 (849)
T COG3899 235 -TKLLPAPLLELIFEKTKGNPFFIEEFLKALYE 266 (849)
T ss_pred -cccccchHHHHHHHHhcCCCccHHHHHHHHHh
Confidence 24566788899999999999888877776665
No 319
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.71 E-value=8.2e-05 Score=63.64 Aligned_cols=20 Identities=55% Similarity=0.835 Sum_probs=18.7
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~ 88 (355)
+||||+||+|||++|+.++.
T Consensus 15 ~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 15 YLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred EEEECCCCCCHHHHHHhcCC
Confidence 99999999999999999864
No 320
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.69 E-value=0.00056 Score=62.97 Aligned_cols=137 Identities=16% Similarity=0.206 Sum_probs=70.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc--CCccccceeeecCCCccchHHHHHHHHHHHHhhccC---CCCC------CCCCCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF--GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQD------GKPCPP 137 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~---~~~~------~~~~~~ 137 (355)
+.|.||+|+||||..-.+|..+. ....+..++..|.-.-...+.+ +.++..-... .... -....+
T Consensus 206 i~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQL----k~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 206 IALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQL----KTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHH----HHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 99999999999999888888765 3444445555554332222222 2221110000 0000 000014
Q ss_pred cEEEEEeCCCCCCHH--HHHHHHHHhhhc-cCCccEEEEecCCccccccccCCee-----eEEecCCCHHHHHHHHHHHH
Q psy17903 138 FKIVILDEADSMTHA--AQAALRRTMEKE-TKSTRFCLICNYVSCIIQPLTSRCS-----KFRFKPLAENTMLTRLQYIC 209 (355)
Q Consensus 138 ~~vliiDe~d~l~~~--~~~~Ll~~le~~-~~~~~~Il~~~~~~~l~~~l~sr~~-----~i~~~~~~~~~~~~~l~~~~ 209 (355)
+++|+||=+.+-..+ ....|..++... +..+.+++.++....-+..+..++. .+-|..+++.....-+-..+
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G~~~s~~ 361 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLGNLFSLM 361 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCchhHHHHHH
Confidence 569999988776543 345566665543 3455667766655444444433333 35556666544433333333
No 321
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00024 Score=65.53 Aligned_cols=26 Identities=35% Similarity=0.631 Sum_probs=23.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDM 94 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~ 94 (355)
++|.||+|+||||++..++..+....
T Consensus 244 I~LVGptGvGKTTTiaKLA~~L~~~G 269 (436)
T PRK11889 244 IALIGPTGVGKTTTLAKMAWQFHGKK 269 (436)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 89999999999999999999886443
No 322
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.66 E-value=0.00023 Score=59.07 Aligned_cols=30 Identities=30% Similarity=0.589 Sum_probs=26.1
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCccc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYR 96 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~ 96 (355)
+-++++|+||+||||+++.+++.+....+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~ 31 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWR 31 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhh
Confidence 448999999999999999999999776553
No 323
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.64 E-value=5.9e-05 Score=58.40 Aligned_cols=22 Identities=32% Similarity=0.708 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|+||+||||+++.+++.+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999998
No 324
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.64 E-value=0.0002 Score=56.30 Aligned_cols=25 Identities=28% Similarity=0.499 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
+++++||+|+|||+.+..++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 5899999999999999888887753
No 325
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.63 E-value=0.00065 Score=68.75 Aligned_cols=120 Identities=18% Similarity=0.184 Sum_probs=66.5
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH-------HHHHHH
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK-------VKTFAQ 122 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-------i~~~~~ 122 (355)
.+.+.+.+...... +.++|+|+||||||++++++.+.+........ +.+-++.......+.+. +..+..
T Consensus 325 ~~~Q~~Ai~~~~~~---~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~-v~l~ApTg~AA~~L~e~~g~~a~Tih~lL~ 400 (720)
T TIGR01448 325 SEEQKQALDTAIQH---KVVILTGGPGTGKTTITRAIIELAEELGGLLP-VGLAAPTGRAAKRLGEVTGLTASTIHRLLG 400 (720)
T ss_pred CHHHHHHHHHHHhC---CeEEEECCCCCCHHHHHHHHHHHHHHcCCCce-EEEEeCchHHHHHHHHhcCCccccHHHHhh
Confidence 45555566655432 24899999999999999999888754320012 22222221112222211 111211
Q ss_pred hhccCCCCC-CCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecC
Q psy17903 123 QTASGFNQD-GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (355)
Q Consensus 123 ~~~~~~~~~-~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 176 (355)
......... .....+..+|||||+..+.......|++.+. ..+.+|++++.
T Consensus 401 ~~~~~~~~~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~---~~~rlilvGD~ 452 (720)
T TIGR01448 401 YGPDTFRHNHLEDPIDCDLLIVDESSMMDTWLALSLLAALP---DHARLLLVGDT 452 (720)
T ss_pred ccCCccchhhhhccccCCEEEEeccccCCHHHHHHHHHhCC---CCCEEEEECcc
Confidence 111000000 0000145699999999999888777777653 46778888863
No 326
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.63 E-value=0.00065 Score=66.91 Aligned_cols=105 Identities=22% Similarity=0.354 Sum_probs=59.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccc--cceeeecCCCccchHHHHHHHHHHH-----------------Hh--hcc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYR--ERILELNASDDRGIQVIRDKVKTFA-----------------QQ--TAS 126 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~--~~~~~~~~~~~~~~~~i~~~i~~~~-----------------~~--~~~ 126 (355)
..+|+|+||||||+++..+...+...... ..-+.+-+.+..-...+.+.+.... .+ ...
T Consensus 162 ~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~~~~~~~~~~~a~TiHrlL 241 (586)
T TIGR01447 162 FSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAAAEALIAALPSEAVTIHRLL 241 (586)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhcccccchhhhhccccccchhhhhh
Confidence 38999999999999999988776431110 0123333333222233333322210 00 000
Q ss_pred CCCCC--------CCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecC
Q psy17903 127 GFNQD--------GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (355)
Q Consensus 127 ~~~~~--------~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 176 (355)
+.... ..+ -+..+|||||+..+.......|++.+ +..+.+|+.++.
T Consensus 242 g~~~~~~~~~~~~~~~-l~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD~ 295 (586)
T TIGR01447 242 GIKPDTKRFRHHERNP-LPLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGDK 295 (586)
T ss_pred cccCCcchhhhcccCC-CcccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECCh
Confidence 00000 111 14579999999999988777777766 456788888863
No 327
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.63 E-value=0.00029 Score=62.47 Aligned_cols=35 Identities=20% Similarity=0.238 Sum_probs=28.4
Q ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 58 ~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
....+.++..+++|.||+|+||||+++.++..+..
T Consensus 103 ~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 103 PYLVRNNRVLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred HHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 34445566678999999999999999999988753
No 328
>PRK14974 cell division protein FtsY; Provisional
Probab=97.62 E-value=0.00047 Score=62.97 Aligned_cols=25 Identities=36% Similarity=0.487 Sum_probs=22.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
++|.|++|+||||++..++..+...
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999887543
No 329
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.62 E-value=0.00063 Score=64.44 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.||+|+||||++..++..+.
T Consensus 224 i~~vGptGvGKTTt~~kLA~~~~ 246 (424)
T PRK05703 224 VALVGPTGVGKTTTLAKLAARYA 246 (424)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999988764
No 330
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.60 E-value=0.0032 Score=58.93 Aligned_cols=91 Identities=18% Similarity=0.257 Sum_probs=60.2
Q ss_pred cEEEEEeCCCCCCH--------HHHHHHHHHhhhc----cCCccEEEEecCC-----c---cccccccCCe---------
Q psy17903 138 FKIVILDEADSMTH--------AAQAALRRTMEKE----TKSTRFCLICNYV-----S---CIIQPLTSRC--------- 188 (355)
Q Consensus 138 ~~vliiDe~d~l~~--------~~~~~Ll~~le~~----~~~~~~Il~~~~~-----~---~l~~~l~sr~--------- 188 (355)
+=+|++||++.+-. ...+.|+.++++. .+++.|++++++. . .-+++|.+|.
T Consensus 240 GLlI~lDE~e~l~kl~~~~~R~~~ye~lr~lidd~~~G~~~gL~~~~~gTPef~eD~rrGv~sY~AL~~RL~~~~~~~~~ 319 (416)
T PF10923_consen 240 GLLILLDELENLYKLRNDQAREKNYEALRQLIDDIDQGRAPGLYFVFAGTPEFFEDGRRGVYSYEALAQRLAEEFFADDG 319 (416)
T ss_pred ceEEEEechHHHHhcCChHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeCHHHhhCccccccccHHHHHHHhcccccccc
Confidence 45899999987721 3357777777653 2456677766532 1 1245555442
Q ss_pred ------eeEEecCCCHHHHHHHHHHHHHH------cCCCCCHHHHHHHHHHc
Q psy17903 189 ------SKFRFKPLAENTMLTRLQYICEQ------ESVMCDFKALETLVETS 228 (355)
Q Consensus 189 ------~~i~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~l~~~~ 228 (355)
..+.+.+++.+++..++.++..- ....++++.+..+++.+
T Consensus 320 ~~n~~~pvIrL~~l~~eel~~l~~klr~i~a~~~~~~~~v~d~~l~~~~~~~ 371 (416)
T PF10923_consen 320 FDNLRAPVIRLQPLTPEELLELLEKLRDIYAEAYGYESRVDDEELKAFAQHV 371 (416)
T ss_pred ccCccCceecCCCCCHHHHHHHHHHHHHHHHhhCCCCCCCCHHHHHHHHHHH
Confidence 27899999999998887776542 23467888888887665
No 331
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.59 E-value=0.00088 Score=66.19 Aligned_cols=104 Identities=19% Similarity=0.271 Sum_probs=59.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCc-cccceeeecCCCccchHHHHHHHHHHH-----------------Hh--hccCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFA-----------------QQ--TASGF 128 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~-----------------~~--~~~~~ 128 (355)
.+|+|+|||||||++..+...+.... .....+.+-+++..-...+.+.+.... .+ ...+.
T Consensus 170 ~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlLg~ 249 (615)
T PRK10875 170 SVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLLGA 249 (615)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHhCc
Confidence 89999999999999999888763311 011223333333222233333222100 00 00111
Q ss_pred CCC--------CCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecC
Q psy17903 129 NQD--------GKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (355)
Q Consensus 129 ~~~--------~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 176 (355)
... ..+ -+..+|||||+..+.-.....|++.+ +.++++|+.++.
T Consensus 250 ~~~~~~~~~~~~~~-l~~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD~ 301 (615)
T PRK10875 250 QPGSQRLRYHAGNP-LHLDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGDR 301 (615)
T ss_pred CCCccchhhccccC-CCCCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecch
Confidence 100 011 13469999999999877777777766 456889988864
No 332
>KOG1051|consensus
Probab=97.58 E-value=0.00078 Score=68.19 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=104.0
Q ss_pred CCccccc-HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCcccc-----ceeeecCC----CccchHHH
Q psy17903 44 IDDVIEQ-QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRE-----RILELNAS----DDRGIQVI 113 (355)
Q Consensus 44 ~~~~vg~-~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~-----~~~~~~~~----~~~~~~~i 113 (355)
++-++|+ +..++++.+.+......|-+|.|++|+|||.++.-+++.+..+.... .++.++.. ......++
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~ 264 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEF 264 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHH
Confidence 5678887 77777777777665556689999999999999999999986533221 22333322 12223445
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHH-------HHHHHHHhhhccCCccEEEEecCC-----cccc
Q psy17903 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA-------QAALRRTMEKETKSTRFCLICNYV-----SCII 181 (355)
Q Consensus 114 ~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~-------~~~Ll~~le~~~~~~~~Il~~~~~-----~~l~ 181 (355)
.+.++......-.+ .++-|++|||++.+.... ...+++.+..... +.+|.+|+.. -.-.
T Consensus 265 E~rlk~l~k~v~~~--------~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~-l~~IGatT~e~Y~k~iekd 335 (898)
T KOG1051|consen 265 EERLKELLKEVESG--------GGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGG-LWCIGATTLETYRKCIEKD 335 (898)
T ss_pred HHHHHHHHHHHhcC--------CCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCC-eEEEecccHHHHHHHHhhC
Confidence 55555444321110 134599999999885421 2223333333222 6777766521 1246
Q ss_pred ccccCCeeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHH
Q psy17903 182 QPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALET 223 (355)
Q Consensus 182 ~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~ 223 (355)
|++.+|+..+.+.-|+.++...++.....+ .|..+++++...
T Consensus 336 PalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~ 381 (898)
T KOG1051|consen 336 PALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFS 381 (898)
T ss_pred cchhhCcceeEeccCcccchhhhhhhhhhhhccccCCccccccccc
Confidence 899999999888889887766666554443 344455444333
No 333
>PRK13695 putative NTPase; Provisional
Probab=97.56 E-value=0.00099 Score=55.21 Aligned_cols=69 Identities=13% Similarity=0.204 Sum_probs=42.7
Q ss_pred cEEEEEeCCCCC---CHHHHHHHHHHhhhccCCccEEEEecCC--ccccccccCC--eeeEEecCCCHHHHHHHHHHHH
Q psy17903 138 FKIVILDEADSM---THAAQAALRRTMEKETKSTRFCLICNYV--SCIIQPLTSR--CSKFRFKPLAENTMLTRLQYIC 209 (355)
Q Consensus 138 ~~vliiDe~d~l---~~~~~~~Ll~~le~~~~~~~~Il~~~~~--~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~~~~ 209 (355)
..++++||+..+ .....+.+...++. ...+|++++.. ....+.+.++ +..+++.+-+.+++...+..+.
T Consensus 97 ~~~lllDE~~~~e~~~~~~~~~l~~~~~~---~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 97 ADVIIIDEIGKMELKSPKFVKAVEEVLDS---EKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILNRL 172 (174)
T ss_pred CCEEEEECCCcchhhhHHHHHHHHHHHhC---CCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHHHH
Confidence 359999997554 33345666666642 23456666653 2344555555 4578888888888777766543
No 334
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.56 E-value=0.0014 Score=54.70 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+++.|+||+||||+++.+++.++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 68999999999999999999873
No 335
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.55 E-value=0.0005 Score=64.04 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=33.5
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
|..+.+.+.+.+......++++.|+.|||||++.+++.+.+..
T Consensus 6 Q~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 6 QRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 4556666666666544445999999999999999999998754
No 336
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.54 E-value=0.00061 Score=58.22 Aligned_cols=52 Identities=19% Similarity=0.367 Sum_probs=34.2
Q ss_pred HhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH
Q psy17903 61 LSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (355)
Q Consensus 61 l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (355)
+.+|-++. ++|+||||+|||+++..++...... ...++.++... ...+.+.+
T Consensus 5 l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~--g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 5 LGGGVERGTITQIYGPPGSGKTNICMILAVNAARQ--GKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhC--CCeEEEEECCC-CCHHHHHH
Confidence 44444434 9999999999999999998876433 23456666654 33344433
No 337
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.52 E-value=0.0013 Score=57.31 Aligned_cols=35 Identities=26% Similarity=0.183 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHh
Q psy17903 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 56 ~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.|-..+.+|-++. ++++|+||+|||+++..++...
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~ 49 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGA 49 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3445555554444 9999999999999999997654
No 338
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.51 E-value=0.0007 Score=54.77 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=31.8
Q ss_pred CcEEEEEeCCCCCCH---HHHHHHHHHhhhccCCccEEEEecCCc
Q psy17903 137 PFKIVILDEADSMTH---AAQAALRRTMEKETKSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d~l~~---~~~~~Ll~~le~~~~~~~~Il~~~~~~ 178 (355)
.+.+||+||+-.... -..+.+++.+++.+..+-+|+|+....
T Consensus 95 ~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 95 EYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred CCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 567999999965522 124668888988888999999998754
No 339
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.49 E-value=0.0003 Score=71.45 Aligned_cols=115 Identities=15% Similarity=0.234 Sum_probs=65.0
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH-------HHHHHH
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK-------VKTFAQ 122 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~-------i~~~~~ 122 (355)
.+.+...+...+... ..++|.|++|||||++++++...+....+ .+.-+ ++...-...+.+. +..+..
T Consensus 354 s~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~g~--~V~~~-ApTg~Aa~~L~~~~g~~a~Ti~~~~~ 428 (744)
T TIGR02768 354 SEEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAAGY--RVIGA-ALSGKAAEGLQAESGIESRTLASLEY 428 (744)
T ss_pred CHHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhCCC--eEEEE-eCcHHHHHHHHhccCCceeeHHHHHh
Confidence 455566666655442 24899999999999999999887654322 22222 2211111111110 111110
Q ss_pred hhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEec
Q psy17903 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175 (355)
Q Consensus 123 ~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 175 (355)
.. ........+..+|||||+..+.......|+..... ....+||+++
T Consensus 429 ~~----~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~--~~~kliLVGD 475 (744)
T TIGR02768 429 AW----ANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEE--AGAKVVLVGD 475 (744)
T ss_pred hh----ccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 00 00001112557999999999998887777776553 3566777775
No 340
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.49 E-value=7.7e-05 Score=59.56 Aligned_cols=23 Identities=30% Similarity=0.631 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+++.|+||+||||+++.+++.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 68999999999999999998874
No 341
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.48 E-value=0.00083 Score=56.20 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++++||||+|||+++..++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~ 24 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGL 24 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999887654
No 342
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.46 E-value=0.0007 Score=62.92 Aligned_cols=49 Identities=24% Similarity=0.458 Sum_probs=34.7
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC
Q psy17903 55 SVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (355)
Q Consensus 55 ~~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 105 (355)
..|.+.+.+|-.+. ++|+|+||+|||+++..++..+.... ..+++++..
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g--~~VlYvs~E 119 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG--GKVLYVSGE 119 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcC--CeEEEEECC
Confidence 45566666665555 99999999999999999998764321 245555543
No 343
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.44 E-value=0.00048 Score=71.21 Aligned_cols=115 Identities=15% Similarity=0.187 Sum_probs=64.1
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHH-------HHHHHHHH
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIR-------DKVKTFAQ 122 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~-------~~i~~~~~ 122 (355)
.+.+...+...+.... .++|.|.+|||||++++.+...+....+ .++-+..+. .-...+. ..+..+..
T Consensus 348 s~eQr~Av~~il~s~~--v~vv~G~AGTGKTT~l~~~~~~~e~~G~--~V~~~ApTG-kAA~~L~e~tGi~a~TI~sll~ 422 (988)
T PRK13889 348 SGEQADALAHVTDGRD--LGVVVGYAGTGKSAMLGVAREAWEAAGY--EVRGAALSG-IAAENLEGGSGIASRTIASLEH 422 (988)
T ss_pred CHHHHHHHHHHhcCCC--eEEEEeCCCCCHHHHHHHHHHHHHHcCC--eEEEecCcH-HHHHHHhhccCcchhhHHHHHh
Confidence 4455556665554332 4789999999999999888776543222 222221111 0001111 11222211
Q ss_pred hhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEec
Q psy17903 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175 (355)
Q Consensus 123 ~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 175 (355)
....+ .....+..+|||||+..+.......|++..+. ..+.+|++++
T Consensus 423 ~~~~~----~~~l~~~~vlIVDEASMv~~~~m~~LL~~a~~--~garvVLVGD 469 (988)
T PRK13889 423 GWGQG----RDLLTSRDVLVIDEAGMVGTRQLERVLSHAAD--AGAKVVLVGD 469 (988)
T ss_pred hhccc----ccccccCcEEEEECcccCCHHHHHHHHHhhhh--CCCEEEEECC
Confidence 00000 00012456999999999998888888877653 3567787775
No 344
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.43 E-value=0.00013 Score=61.54 Aligned_cols=58 Identities=12% Similarity=0.156 Sum_probs=34.6
Q ss_pred cEEEEEeCCCCCCHHHH------HHHHHHhhh-ccCCccEEEEecCCccccccccCCee-eEEecC
Q psy17903 138 FKIVILDEADSMTHAAQ------AALRRTMEK-ETKSTRFCLICNYVSCIIQPLTSRCS-KFRFKP 195 (355)
Q Consensus 138 ~~vliiDe~d~l~~~~~------~~Ll~~le~-~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~ 195 (355)
..+|||||++...+... ......+.. .....-++++|.++..+.+.++..+. .+++..
T Consensus 80 ~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k 145 (193)
T PF05707_consen 80 GSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRK 145 (193)
T ss_dssp T-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE
T ss_pred CcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEe
Confidence 34999999998744221 233355543 34567788899999888888887766 444443
No 345
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.42 E-value=0.00098 Score=58.71 Aligned_cols=24 Identities=25% Similarity=0.436 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|+|+||+||||+|+.+++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998853
No 346
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.42 E-value=0.0057 Score=55.84 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=32.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
+-|.|+||+||||++..+...+.....+..++.+|.+..
T Consensus 59 igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~ 97 (332)
T PRK09435 59 IGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSST 97 (332)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCcc
Confidence 999999999999999999999876666667777777654
No 347
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=97.41 E-value=0.0011 Score=60.66 Aligned_cols=118 Identities=25% Similarity=0.309 Sum_probs=65.3
Q ss_pred HHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCC
Q psy17903 53 VVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131 (355)
Q Consensus 53 ~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~ 131 (355)
.+..++.++++-...+ ++|+|||+||||.++..+.+-+.+.... ..|....... .+.
T Consensus 248 Fl~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViS----f~Ns~ShFWL------------qPL------ 305 (432)
T PF00519_consen 248 FLIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVIS----FVNSKSHFWL------------QPL------ 305 (432)
T ss_dssp HHHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE-----GGGTTSCGGG------------GGG------
T ss_pred HHHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEE----ecCCCCcccc------------cch------
Confidence 3466777887644445 9999999999999999999998553221 1232221111 111
Q ss_pred CCCCCCcEEEEEeCCCCCCHHHH-HHHHHHhhhcc-------------CCccEEEEecCC---ccccccccCCeeeEEec
Q psy17903 132 GKPCPPFKIVILDEADSMTHAAQ-AALRRTMEKET-------------KSTRFCLICNYV---SCIIQPLTSRCSKFRFK 194 (355)
Q Consensus 132 ~~~~~~~~vliiDe~d~l~~~~~-~~Ll~~le~~~-------------~~~~~Il~~~~~---~~l~~~l~sr~~~i~~~ 194 (355)
.+.|+-+|||+-.-.-+-. ..|++.|+..+ .-+.+++++|.. +.-..-|.||...++|+
T Consensus 306 ----~d~Ki~llDDAT~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~YLhSRi~~f~F~ 381 (432)
T PF00519_consen 306 ----ADAKIALLDDATYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWKYLHSRITCFEFP 381 (432)
T ss_dssp ----CT-SSEEEEEE-HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCHHHCTTEEEEE--
T ss_pred ----hcCcEEEEcCCcccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhhhhhheEEEEEcC
Confidence 1456899999843222211 23455554321 123456677732 22345688998888775
Q ss_pred CC
Q psy17903 195 PL 196 (355)
Q Consensus 195 ~~ 196 (355)
.+
T Consensus 382 n~ 383 (432)
T PF00519_consen 382 NP 383 (432)
T ss_dssp S-
T ss_pred Cc
Confidence 43
No 348
>PRK14532 adenylate kinase; Provisional
Probab=97.41 E-value=0.0038 Score=52.34 Aligned_cols=24 Identities=21% Similarity=0.505 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+++|.||||+||||+++.+++.++
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g 25 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG 25 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 479999999999999999999873
No 349
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.40 E-value=0.0005 Score=61.86 Aligned_cols=121 Identities=17% Similarity=0.181 Sum_probs=61.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCc-cccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDM-YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d 147 (355)
+++||+-|+|||.|...+...+.... ....+- .....+.+.+................-..+.+|+++||++
T Consensus 68 lYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh-------~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~~~vLCfDEF~ 140 (367)
T COG1485 68 LYLWGGVGRGKTMLMDLFYESLPGERKRRLHFH-------RFMARVHQRLHTLQGQTDPLPPIADELAAETRVLCFDEFE 140 (367)
T ss_pred EEEECCCCccHHHHHHHHHhhCCccccccccHH-------HHHHHHHHHHHHHcCCCCccHHHHHHHHhcCCEEEeeeee
Confidence 99999999999999999999885422 111100 0001111111111100000000000000255799999997
Q ss_pred CCCHHHHHHHHHHhhhc-cCCccEEEEecCC-cc----------cc---ccccCCeeeEEecCC
Q psy17903 148 SMTHAAQAALRRTMEKE-TKSTRFCLICNYV-SC----------II---QPLTSRCSKFRFKPL 196 (355)
Q Consensus 148 ~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~-~~----------l~---~~l~sr~~~i~~~~~ 196 (355)
.-.....--|.++++.. ..+++++.|+|.. +. ++ ..|+++|.++.+..+
T Consensus 141 VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD~~ 204 (367)
T COG1485 141 VTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVDGP 204 (367)
T ss_pred ecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEecCC
Confidence 66554433344444432 3456667677642 22 22 445778877666555
No 350
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.39 E-value=0.00073 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|+|+||+||||+++.+++.+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 6899999999999999999986
No 351
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.37 E-value=0.0015 Score=61.90 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=26.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeec
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 103 (355)
++|+|++|+||||++..++..+....+...++..|
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 99999999999999999999886544433333333
No 352
>PRK08118 topology modulation protein; Reviewed
Probab=97.37 E-value=0.00022 Score=58.72 Aligned_cols=25 Identities=20% Similarity=0.302 Sum_probs=22.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.++|.||+|+||||+|+.+++.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~ 27 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNI 27 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999999843
No 353
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.36 E-value=0.00089 Score=59.28 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++++|+||+|||+++..++...
T Consensus 39 ~lI~G~pGtGKT~l~~qf~~~~ 60 (259)
T TIGR03878 39 INITGVSDTGKSLMVEQFAVTQ 60 (259)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999987764
No 354
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.32 E-value=0.0014 Score=54.64 Aligned_cols=38 Identities=26% Similarity=0.424 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHH-HHHHHHHh
Q psy17903 51 QEVVSVLKKCLSGADLPHFLFYGPPGTGKTST-MIAACHQL 90 (355)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~l-a~~l~~~l 90 (355)
+.+...+...+... .++++.||+|+|||.. +..+.+.+
T Consensus 11 ~~Q~~~~~~~~~~~--~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 11 PYQKEAIEALLSGL--RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred HHHHHHHHHHHcCC--CcEEEECCCCCchhHHHHHHHHHHh
Confidence 33444444444332 4699999999999994 44444444
No 355
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.32 E-value=0.0014 Score=62.70 Aligned_cols=49 Identities=24% Similarity=0.481 Sum_probs=34.9
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC
Q psy17903 55 SVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (355)
Q Consensus 55 ~~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 105 (355)
..|.+.+.+|-.+. ++|+|+||+|||+++..++...... ...+++++..
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~--g~~vlYvs~E 117 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA--GGKVLYVSGE 117 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcc
Confidence 45666666665555 9999999999999999999876422 2245555543
No 356
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.31 E-value=0.0021 Score=54.50 Aligned_cols=28 Identities=29% Similarity=0.404 Sum_probs=24.1
Q ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 66 LPHFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 66 ~~~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
..+.|+.||||+||||+.+-+++-+..+
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g 164 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDG 164 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhcc
Confidence 3458999999999999999999988643
No 357
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0037 Score=57.50 Aligned_cols=50 Identities=24% Similarity=0.493 Sum_probs=38.9
Q ss_pred HHHHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCC
Q psy17903 54 VSVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (355)
Q Consensus 54 ~~~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 106 (355)
+..+.+.+-+|-.+. +||-|.||.||||+...++..+.... .++++.+.+
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~---~vLYVsGEE 130 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG---KVLYVSGEE 130 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC---cEEEEeCCc
Confidence 456777788877776 99999999999999999999885432 566666654
No 358
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0032 Score=60.44 Aligned_cols=23 Identities=30% Similarity=0.602 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||+|+||||++..++..+.
T Consensus 353 IaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 353 IALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999988653
No 359
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.29 E-value=0.0042 Score=51.16 Aligned_cols=55 Identities=11% Similarity=0.173 Sum_probs=36.8
Q ss_pred cEEEEEeCC-CCCCHHHHHHHHHHhhhccC-CccEEEEecCCccccccccCCeeeEEe
Q psy17903 138 FKIVILDEA-DSMTHAAQAALRRTMEKETK-STRFCLICNYVSCIIQPLTSRCSKFRF 193 (355)
Q Consensus 138 ~~vliiDe~-d~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~~l~~~l~sr~~~i~~ 193 (355)
-.+++-||- .++.++....+++++++... .+.++++|.+. .+...++.|+..++-
T Consensus 156 P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~-~lv~~~~~rvl~l~~ 212 (223)
T COG2884 156 PAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDL-ELVNRMRHRVLALED 212 (223)
T ss_pred CCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccH-HHHHhccCcEEEEeC
Confidence 359999996 57888888888888887543 34455566544 355566777665543
No 360
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.29 E-value=0.0024 Score=57.85 Aligned_cols=36 Identities=28% Similarity=0.368 Sum_probs=26.4
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 56 VLKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 56 ~l~~~l~-~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.|...+. +|-++. ++|+||||+|||+++..++....
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~ 80 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQ 80 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4445555 444333 99999999999999988777654
No 361
>PF13479 AAA_24: AAA domain
Probab=97.28 E-value=0.00026 Score=60.77 Aligned_cols=19 Identities=47% Similarity=0.968 Sum_probs=17.7
Q ss_pred eEEEECCCCCCHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAA 86 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l 86 (355)
.++|||+||+|||+++..+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL 23 (213)
T ss_pred EEEEECCCCCCHHHHHHhC
Confidence 3999999999999999888
No 362
>PRK06762 hypothetical protein; Provisional
Probab=97.28 E-value=0.0046 Score=50.69 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|+|++|+||||+|+.+++.+
T Consensus 5 i~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999997
No 363
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.27 E-value=0.0023 Score=55.59 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=19.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++..++..+
T Consensus 27 ~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 27 ILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999987666655
No 364
>PF13245 AAA_19: Part of AAA domain
Probab=97.27 E-value=0.0012 Score=46.43 Aligned_cols=24 Identities=50% Similarity=0.862 Sum_probs=17.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+++.||||+|||+++...+..+.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 367799999999966555555543
No 365
>KOG1808|consensus
Probab=97.26 E-value=0.0013 Score=70.96 Aligned_cols=150 Identities=19% Similarity=0.335 Sum_probs=94.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCC
Q psy17903 52 EVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131 (355)
Q Consensus 52 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~ 131 (355)
.....+.++...+..| +||-||.|+|||+++..+++..+. +++.++--.. .++++.+..+...........
T Consensus 427 ~~la~~~~a~~~~~~p-illqG~tssGKtsii~~la~~~g~-----~~vrinnheh---td~qeyig~y~~~~~g~l~fr 497 (1856)
T KOG1808|consen 427 KNLADLARAISSGKFP-ILLQGPTSSGKTSIIKELARATGK-----NIVRINNHEH---TDLQEYIGTYVADDNGDLVFR 497 (1856)
T ss_pred HHHHHHHHHHhcCCCC-eEEecCcCcCchhHHHHHHHHhcc-----Cceehhcccc---chHHHHHHhhhcCCCCCeeee
Confidence 3345556666667655 899999999999999999999843 4455544332 233444443222111100000
Q ss_pred -CC---CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----CCcc--------EEEEecCC-------ccccccccCC
Q psy17903 132 -GK---PCPPFKIVILDEADSMTHAAQAALRRTMEKET-----KSTR--------FCLICNYV-------SCIIQPLTSR 187 (355)
Q Consensus 132 -~~---~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----~~~~--------~Il~~~~~-------~~l~~~l~sr 187 (355)
+. ..-++..+|+||++....+..++|.+++++.. .+.+ .++++-++ ..+..++++|
T Consensus 498 eg~LV~Alr~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~grk~lsRa~~~r 577 (1856)
T KOG1808|consen 498 EGVLVQALRNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGRKILSRALRNR 577 (1856)
T ss_pred hhHHHHHHHhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchhhhhhhccccc
Confidence 00 00134589999999999999999999998621 1221 12333222 2255788888
Q ss_pred eeeEEecCCCHHHHHHHHHHHHH
Q psy17903 188 CSKFRFKPLAENTMLTRLQYICE 210 (355)
Q Consensus 188 ~~~i~~~~~~~~~~~~~l~~~~~ 210 (355)
+..++|....++++..++..++.
T Consensus 578 f~e~~f~~~~e~e~~~i~~~~~~ 600 (1856)
T KOG1808|consen 578 FIELHFDDIGEEELEEILEHRCG 600 (1856)
T ss_pred chhhhhhhcCchhhhhhhccccc
Confidence 88999999999999888886653
No 366
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.0017 Score=59.77 Aligned_cols=25 Identities=32% Similarity=0.529 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
++|.||.|+||||++..++..+...
T Consensus 209 i~lvGptGvGKTTt~akLA~~l~~~ 233 (407)
T PRK12726 209 ISLIGQTGVGKTTTLVKLGWQLLKQ 233 (407)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 8999999999999999999877443
No 367
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.24 E-value=0.0027 Score=52.36 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+++.|++|+|||++|..++..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 37999999999999999999886
No 368
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.24 E-value=0.0021 Score=53.48 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=31.0
Q ss_pred CcEEEEEeCCCCCCHH---HHHHHHHHhhhccCCccEEEEecCCc
Q psy17903 137 PFKIVILDEADSMTHA---AQAALRRTMEKETKSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d~l~~~---~~~~Ll~~le~~~~~~~~Il~~~~~~ 178 (355)
.+.+||+||+-....- ..+.+++.|+..+..+-+|+|+....
T Consensus 115 ~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 115 SYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred CCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 5679999998544221 13567888888888999999998654
No 369
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.24 E-value=0.0014 Score=57.40 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=23.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
.++|.||+|+|||++++.+++.+...
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccc
Confidence 49999999999999999999987543
No 370
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.23 E-value=0.0046 Score=50.67 Aligned_cols=39 Identities=10% Similarity=0.200 Sum_probs=30.1
Q ss_pred CcEEEEEeCCC------CCCHHHHHHHHHHhhhccCCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD------SMTHAAQAALRRTMEKETKSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d------~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 178 (355)
.+.+||+||+- .++. +.+++.|+..+..+-+|+|+....
T Consensus 97 ~~DlvVLDEi~~A~~~gli~~---~~v~~lL~~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 97 ELDLVLLDELTYALKYGYLDV---EEVVEALQERPGHQHVIITGRGCP 141 (173)
T ss_pred CCCEEEehhhHHHHHCCCcCH---HHHHHHHHhCCCCCEEEEECCCCC
Confidence 56799999996 3333 457788888899999999998654
No 371
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.21 E-value=0.0008 Score=58.20 Aligned_cols=39 Identities=36% Similarity=0.547 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++...+.+..++.... -.++.||||||||+++..++..+
T Consensus 3 n~~Q~~Ai~~~~~~~~--~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 3 NESQREAIQSALSSNG--ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -HHHHHHHHHHCTSSE---EEEE-STTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCC--CEEEECCCCCChHHHHHHHHHHh
Confidence 3456666766666542 27999999999999888888877
No 372
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.20 E-value=0.0059 Score=52.52 Aligned_cols=48 Identities=29% Similarity=0.459 Sum_probs=33.8
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC
Q psy17903 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (355)
Q Consensus 56 ~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 105 (355)
.|...+.+|-.+. ++|+|+||+|||+++..++...... ...++.++..
T Consensus 7 ~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~--g~~v~yi~~e 56 (218)
T cd01394 7 GLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQ--GKKVAYIDTE 56 (218)
T ss_pred HHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhc--CCeEEEEECC
Confidence 3455565554444 9999999999999999999887543 2345556554
No 373
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=97.16 E-value=0.0012 Score=68.71 Aligned_cols=115 Identities=17% Similarity=0.239 Sum_probs=64.3
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH-------HHHHHHH
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD-------KVKTFAQ 122 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~-------~i~~~~~ 122 (355)
.+.+...+....... ...++.|++|+|||++++.+...+....+ .++-+-.+. .-...+.+ .+..+..
T Consensus 383 s~eQ~~Av~~i~~~~--r~~~v~G~AGTGKTt~l~~~~~~~e~~G~--~V~g~ApTg-kAA~~L~e~~Gi~a~TIas~ll 457 (1102)
T PRK13826 383 SDEQKTAIEHVAGPA--RIAAVVGRAGAGKTTMMKAAREAWEAAGY--RVVGGALAG-KAAEGLEKEAGIQSRTLSSWEL 457 (1102)
T ss_pred CHHHHHHHHHHhccC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCC--eEEEEcCcH-HHHHHHHHhhCCCeeeHHHHHh
Confidence 344444454443222 24899999999999999999887644322 233222211 11111111 0111110
Q ss_pred hhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEec
Q psy17903 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175 (355)
Q Consensus 123 ~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 175 (355)
....+ ..+.....+|||||+..+.......|++..+. ..+.+|++++
T Consensus 458 ~~~~~----~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~--~garvVLVGD 504 (1102)
T PRK13826 458 RWNQG----RDQLDNKTVFVLDEAGMVASRQMALFVEAVTR--AGAKLVLVGD 504 (1102)
T ss_pred hhccC----ccCCCCCcEEEEECcccCCHHHHHHHHHHHHh--cCCEEEEECC
Confidence 00000 01112456999999999999888888888864 3467777775
No 374
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.16 E-value=0.0025 Score=59.61 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.||+|+||||++..++..+
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999765
No 375
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.16 E-value=0.016 Score=53.19 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=29.2
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 53 VVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 53 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
....|..+++.+ .+++|+|++|+||||+++++...+..
T Consensus 149 ~~~~L~~~v~~~--~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 149 IKEFLEHAVISK--KNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred HHHHHHHHHHcC--CcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 344455555543 36999999999999999999998754
No 376
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=97.13 E-value=0.014 Score=52.92 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=70.7
Q ss_pred Ccccc-cHHHHHHHHHHHh----cCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHH
Q psy17903 45 DDVIE-QQEVVSVLKKCLS----GADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117 (355)
Q Consensus 45 ~~~vg-~~~~~~~l~~~l~----~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 117 (355)
+++.+ .+..+..+.+++. .....+ ++++|+.|+|||+++..+..-++.... ....+. ....+..
T Consensus 48 ~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~-----~~~~~~--~~~~~~~-- 118 (304)
T TIGR01613 48 LETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYAT-----TAVASL--KMNEFQE-- 118 (304)
T ss_pred HHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhc-----cCCcch--hhhhccC--
Confidence 44444 4445666666652 222222 999999999999999988766532210 000000 0000000
Q ss_pred HHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhh--------------ccCCccEEEEecCCccc---
Q psy17903 118 KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEK--------------ETKSTRFCLICNYVSCI--- 180 (355)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~--------------~~~~~~~Il~~~~~~~l--- 180 (355)
..+..... .++++++.||++.-.....+.|..+... ......+|+++|....+
T Consensus 119 ~~f~~a~l----------~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~~~ 188 (304)
T TIGR01613 119 HRFGLARL----------EGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIRGF 188 (304)
T ss_pred CCchhhhh----------cCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccCCC
Confidence 00000000 1556999999974322223334333321 12346788899976544
Q ss_pred cccccCCeeeEEecC
Q psy17903 181 IQPLTSRCSKFRFKP 195 (355)
Q Consensus 181 ~~~l~sr~~~i~~~~ 195 (355)
..++.+|..+|.|..
T Consensus 189 ~~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 189 DGGIKRRLRIIPFTK 203 (304)
T ss_pred ChhheeeEEEEeccC
Confidence 467889999888853
No 377
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.12 E-value=0.0054 Score=55.69 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=26.4
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 56 VLKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 56 ~l~~~l~-~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.|...+. +|-++. +.|+||||+|||+++..++....
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~ 80 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQ 80 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4445555 443333 89999999999999999887653
No 378
>PRK07261 topology modulation protein; Provisional
Probab=97.12 E-value=0.0016 Score=53.87 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|.|++|+||||+++.+++.+..
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~ 26 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNC 26 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999988743
No 379
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.11 E-value=0.0032 Score=54.79 Aligned_cols=63 Identities=13% Similarity=0.114 Sum_probs=39.7
Q ss_pred HHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCc----cccceeeecCCCccchHHHHHHHHH
Q psy17903 57 LKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDM----YRERILELNASDDRGIQVIRDKVKT 119 (355)
Q Consensus 57 l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~i~~~i~~ 119 (355)
|...+.+|-.+. +.|+||||+|||+++..++....... ....++.++..+......+.+....
T Consensus 8 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~ 76 (235)
T cd01123 8 LDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAER 76 (235)
T ss_pred hHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHH
Confidence 344455554444 89999999999999999986542211 1246777777664445555544433
No 380
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=97.11 E-value=0.0026 Score=61.85 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=31.8
Q ss_pred cEEEEEeCC-CCCCHHHHHHHHHHhhhccCCccEEEEecCC
Q psy17903 138 FKIVILDEA-DSMTHAAQAALRRTMEKETKSTRFCLICNYV 177 (355)
Q Consensus 138 ~~vliiDe~-d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 177 (355)
.+++|+||+ ..|.++.+..+...+.+.-+.+.+|-+++++
T Consensus 534 P~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 534 PKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRP 574 (604)
T ss_pred CCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccch
Confidence 359999999 4667788899999999865677788777654
No 381
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.11 E-value=0.0041 Score=50.52 Aligned_cols=96 Identities=16% Similarity=0.205 Sum_probs=53.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc-----------------chHHHHHHHHHHHHhhccCCCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR-----------------GIQVIRDKVKTFAQQTASGFNQ 130 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-----------------~~~~i~~~i~~~~~~~~~~~~~ 130 (355)
.+.|.|+.|+|||++++.++..+... ..-+.++..... +....+ .+. ++.....
T Consensus 27 ~~~i~G~nGsGKStll~~l~g~~~~~---~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~-r~~-l~~~l~~---- 97 (157)
T cd00267 27 IVALVGPNGSGKSTLLRAIAGLLKPT---SGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQ-RVA-LARALLL---- 97 (157)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---ccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHH-HHH-HHHHHhc----
Confidence 48999999999999999998765321 111233322110 001111 000 0110000
Q ss_pred CCCCCCCcEEEEEeCCC-CCCHHHHHHHHHHhhhccC-CccEEEEecCCc
Q psy17903 131 DGKPCPPFKIVILDEAD-SMTHAAQAALRRTMEKETK-STRFCLICNYVS 178 (355)
Q Consensus 131 ~~~~~~~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~~~ 178 (355)
+.+++++||.. .+.......+.+.+.+... ...+++++++..
T Consensus 98 ------~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 141 (157)
T cd00267 98 ------NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE 141 (157)
T ss_pred ------CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 23499999986 6666777777777765433 345666776654
No 382
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=97.10 E-value=0.00073 Score=58.73 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4799999999999999999883
No 383
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.10 E-value=0.0031 Score=55.11 Aligned_cols=35 Identities=26% Similarity=0.253 Sum_probs=26.7
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHh
Q psy17903 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 56 ~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.|-+.+.+|-.+. ++|+||||+|||+++..++...
T Consensus 9 ~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~ 45 (237)
T TIGR03877 9 GMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNG 45 (237)
T ss_pred hHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3455566665444 9999999999999998877654
No 384
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0023 Score=59.27 Aligned_cols=22 Identities=36% Similarity=0.629 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.||+|+||||++..++..+
T Consensus 140 i~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 140 FALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999875
No 385
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.09 E-value=0.0026 Score=60.10 Aligned_cols=55 Identities=24% Similarity=0.252 Sum_probs=45.2
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccc
Q psy17903 40 RPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR 96 (355)
Q Consensus 40 ~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~ 96 (355)
...+|+++...+.....+.+++.... . +|++||.|+||||+..++.+.++....+
T Consensus 233 ~~l~l~~Lg~~~~~~~~~~~~~~~p~--GliLvTGPTGSGKTTTLY~~L~~ln~~~~n 288 (500)
T COG2804 233 VILDLEKLGMSPFQLARLLRLLNRPQ--GLILVTGPTGSGKTTTLYAALSELNTPERN 288 (500)
T ss_pred ccCCHHHhCCCHHHHHHHHHHHhCCC--eEEEEeCCCCCCHHHHHHHHHHHhcCCCce
Confidence 35568888888888888888887542 3 9999999999999999999999875543
No 386
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.08 E-value=0.0056 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|.||+|+||||++.++++.+..
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhh
Confidence 799999999999999999988753
No 387
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.08 E-value=0.0067 Score=52.43 Aligned_cols=63 Identities=13% Similarity=0.110 Sum_probs=39.6
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCc----cccceeeecCCCccchHHHHHHHH
Q psy17903 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDM----YRERILELNASDDRGIQVIRDKVK 118 (355)
Q Consensus 56 ~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~~~~~~~i~~~i~ 118 (355)
.|.+.+.+|-.+. +.|+||||+|||+++..++....... ....++.++.........+.....
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~ 75 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAV 75 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHH
Confidence 3444555554444 99999999999999999987753221 123566777665444444444433
No 388
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.08 E-value=0.0062 Score=49.50 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=24.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCcc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~ 95 (355)
+.|+|.+|+||||+|.++.+.|....+
T Consensus 26 iW~TGLSGsGKSTiA~ale~~L~~~G~ 52 (197)
T COG0529 26 IWFTGLSGSGKSTIANALEEKLFAKGY 52 (197)
T ss_pred EEeecCCCCCHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999976554
No 389
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.07 E-value=0.0047 Score=54.74 Aligned_cols=26 Identities=35% Similarity=0.636 Sum_probs=22.9
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
+.+.|.|++|+|||+++..++..+..
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~ 101 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHG 101 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 35999999999999999999988754
No 390
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.06 E-value=0.00083 Score=55.43 Aligned_cols=24 Identities=21% Similarity=0.254 Sum_probs=22.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|+|++|+|||++++.+++.+.
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999999983
No 391
>PRK06696 uridine kinase; Validated
Probab=97.06 E-value=0.0011 Score=57.28 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHhc--CCCCe-EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 50 QQEVVSVLKKCLSG--ADLPH-FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 50 ~~~~~~~l~~~l~~--~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
+..++..|.+.+.. ...+. +.|.|++|+||||+|+.+++.+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35667777777743 22233 999999999999999999999854
No 392
>PRK04328 hypothetical protein; Provisional
Probab=97.05 E-value=0.0042 Score=54.67 Aligned_cols=35 Identities=26% Similarity=0.237 Sum_probs=26.0
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHh
Q psy17903 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 56 ~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.|-+.+.+|-++. ++++|+||+|||+++..++...
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~ 47 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNG 47 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445555554434 9999999999999999877663
No 393
>PRK03839 putative kinase; Provisional
Probab=97.05 E-value=0.00067 Score=56.54 Aligned_cols=22 Identities=32% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|+||+||||+++.+++.+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 394
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.05 E-value=0.024 Score=45.09 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.|++|+|||++++.+++.+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5799999999999999999998
No 395
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.02 E-value=0.0049 Score=59.00 Aligned_cols=50 Identities=26% Similarity=0.482 Sum_probs=35.9
Q ss_pred HHHHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC
Q psy17903 54 VSVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (355)
Q Consensus 54 ~~~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 105 (355)
+..|.+.+.+|-.+. ++|+|+||+|||+++..++..+.... ..+++++..
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g--~kvlYvs~E 131 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQ--MKVLYVSGE 131 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcC--CcEEEEECc
Confidence 456667777666555 99999999999999999988764321 245555544
No 396
>PRK14527 adenylate kinase; Provisional
Probab=97.01 E-value=0.007 Score=50.93 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=22.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
-+++.||||+||||+++.+++.+..
T Consensus 8 ~i~i~G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 8 VVIFLGPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3999999999999999999988743
No 397
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.01 E-value=0.00062 Score=52.99 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|++|+||||+++.|.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999996
No 398
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.01 E-value=0.0062 Score=55.46 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
++|.||+|+||||++..++..+...
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhc
Confidence 8899999999999999999987543
No 399
>PRK06547 hypothetical protein; Provisional
Probab=97.00 E-value=0.0016 Score=53.75 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=25.8
Q ss_pred HHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 60 CLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 60 ~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.+..+....++|.|++|+|||++++.+++.+..
T Consensus 9 ~~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~ 41 (172)
T PRK06547 9 RLCGGGMITVLIDGRSGSGKTTLAGALAARTGF 41 (172)
T ss_pred HhhcCCCEEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344444444999999999999999999998743
No 400
>PRK14528 adenylate kinase; Provisional
Probab=97.00 E-value=0.0034 Score=52.63 Aligned_cols=25 Identities=36% Similarity=0.802 Sum_probs=22.4
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.+++.||||+||||+++.+++.++
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~ 26 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS 26 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998873
No 401
>PRK09354 recA recombinase A; Provisional
Probab=97.00 E-value=0.0085 Score=54.87 Aligned_cols=36 Identities=28% Similarity=0.370 Sum_probs=26.3
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 56 VLKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 56 ~l~~~l~-~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.|-..+. +|-++. +.|+||+|+|||+++..++....
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~ 85 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQ 85 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4445555 443333 89999999999999998876653
No 402
>PRK13947 shikimate kinase; Provisional
Probab=97.00 E-value=0.00096 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
+++|.|+||+|||++++.+++.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 6899999999999999999999843
No 403
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.99 E-value=0.0021 Score=59.30 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=23.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
..+|.||+|+|||++++.+++.+...
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhh
Confidence 48999999999999999999988543
No 404
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.99 E-value=0.0035 Score=51.77 Aligned_cols=25 Identities=32% Similarity=0.359 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
++++|++|+|||+++..++..+...
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6899999999999999999887543
No 405
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.97 E-value=0.0082 Score=54.59 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=22.5
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+++|.||+|+||||++++++..+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCC
Confidence 3699999999999999999998764
No 406
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.97 E-value=0.0017 Score=54.48 Aligned_cols=143 Identities=18% Similarity=0.152 Sum_probs=63.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADS 148 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~ 148 (355)
++|+||+|+|||.++-.+++.++. +++..|...-. . +....+ +........+-+| +++||-..
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~-----pvI~~Driq~y--~-------~l~v~S--grp~~~el~~~~R-iyL~~r~l 66 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGA-----PVISLDRIQCY--P-------ELSVGS--GRPTPSELKGTRR-IYLDDRPL 66 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH-------EEEEE-SGGG---G-------GGTTTT--T---SGGGTT-EE-EES----G
T ss_pred EEEECCCCCChhHHHHHHHHHhCC-----CEEEecceecc--c-------cccccc--CCCCHHHHcccce-eeeccccc
Confidence 799999999999999999999843 44444432100 0 000000 0000000001234 77776432
Q ss_pred ----CCH-HHHHHHHHHhhhccCCccEEEEecCCccccccc----c-CCee--eEEecCCCHHHHHHHHHHHHHHcC--C
Q psy17903 149 ----MTH-AAQAALRRTMEKETKSTRFCLICNYVSCIIQPL----T-SRCS--KFRFKPLAENTMLTRLQYICEQES--V 214 (355)
Q Consensus 149 ----l~~-~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l----~-sr~~--~i~~~~~~~~~~~~~l~~~~~~~~--~ 214 (355)
++. ++.+.|...+.+....--+|+-+...+-+..-. . ..+. +..++-++.+-.....+++.++.- -
T Consensus 67 ~~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~ 146 (233)
T PF01745_consen 67 SDGIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPD 146 (233)
T ss_dssp GG-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS--
T ss_pred cCCCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCC
Confidence 222 345667777777666667788776654322111 1 2222 444555666655555555555421 1
Q ss_pred CCCHHHHHHHHHHc
Q psy17903 215 MCDFKALETLVETS 228 (355)
Q Consensus 215 ~~~~~~~~~l~~~~ 228 (355)
.-.+..++.++...
T Consensus 147 ~~~~Sll~EL~~lW 160 (233)
T PF01745_consen 147 SSGPSLLEELVALW 160 (233)
T ss_dssp SSS--HHHHHHHHH
T ss_pred CCCCcHHHHHHHHH
Confidence 22345666666654
No 407
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.96 E-value=0.016 Score=48.46 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|+||+|+|||++++.+.+..
T Consensus 7 ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 7 FIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 8999999999999999998875
No 408
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.96 E-value=0.0045 Score=61.22 Aligned_cols=227 Identities=16% Similarity=0.151 Sum_probs=124.6
Q ss_pred ccccCCCCCCcccccHHHHHHHHHH------HhcCCCCeEEEEC----CCCCCHHHHHHHHHHHhcC-C----cccccee
Q psy17903 36 VEKYRPKTIDDVIEQQEVVSVLKKC------LSGADLPHFLFYG----PPGTGKTSTMIAACHQLFG-D----MYRERIL 100 (355)
Q Consensus 36 ~~k~~p~~~~~~vg~~~~~~~l~~~------l~~~~~~~~ll~G----p~G~GKt~la~~l~~~l~~-~----~~~~~~~ 100 (355)
.+..+|.+|.++.+++......... ......-++..+| ++|++++..+..+...... . ..+..+.
T Consensus 95 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 174 (647)
T COG1067 95 VPAGRPESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFV 174 (647)
T ss_pred ccccCCcchHHHHHhhhhHHHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhh
Confidence 4455677888888877655444333 1112223478888 9999999998766555211 0 0011112
Q ss_pred ee---cCCC-----ccchHHHHHHHHHHHHhh------ccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc--
Q psy17903 101 EL---NASD-----DRGIQVIRDKVKTFAQQT------ASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-- 164 (355)
Q Consensus 101 ~~---~~~~-----~~~~~~i~~~i~~~~~~~------~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-- 164 (355)
+. +... ....+.+...++.....+ .....++.--.+++++|||||+..|....+..+++.+.+.
T Consensus 175 ~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~ 254 (647)
T COG1067 175 ELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQ 254 (647)
T ss_pred hhccccCCcEEecCCCChhhcceeEEEcCCCCccCCCCcccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccc
Confidence 22 1110 001112222222111111 0000011111157789999999999977777777766542
Q ss_pred -------------------cCCccEEEEecCC--ccccccccCCee----eEEecCC---CHHHHHHHHHHHH----HH-
Q psy17903 165 -------------------TKSTRFCLICNYV--SCIIQPLTSRCS----KFRFKPL---AENTMLTRLQYIC----EQ- 211 (355)
Q Consensus 165 -------------------~~~~~~Il~~~~~--~~l~~~l~sr~~----~i~~~~~---~~~~~~~~l~~~~----~~- 211 (355)
+..+.+|+.+|.. ..+.++..+|.. ...|... +++...+.++.++ +.
T Consensus 255 ~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~~d~ 334 (647)
T COG1067 255 PIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELARDG 334 (647)
T ss_pred cccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHHhcC
Confidence 2345677777743 345555555543 2455433 3444444444433 33
Q ss_pred cCCCCCHHHHHHHHHHc----------CCCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCC
Q psy17903 212 ESVMCDFKALETLVETS----------GGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGV 262 (355)
Q Consensus 212 ~~~~~~~~~~~~l~~~~----------~g~~r~~~~~l~~~~~~~---~~~~It~~~v~~~~~~ 262 (355)
.-..++.+++..|+..+ .-.+|.+.+.++.+...+ +...|+.++|++++..
T Consensus 335 ~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 335 NIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred CCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 33467888888877553 126888999998666655 3456999999998865
No 409
>PRK13808 adenylate kinase; Provisional
Probab=96.95 E-value=0.014 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.569 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+++|.||||+|||++++.|+..++
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg 25 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG 25 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 379999999999999999999873
No 410
>PRK00625 shikimate kinase; Provisional
Probab=96.95 E-value=0.001 Score=54.94 Aligned_cols=24 Identities=33% Similarity=0.336 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+++|.|.||+||||+++.+++.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999984
No 411
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.95 E-value=0.00099 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.+.|++|+|||++++.+++.+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999997
No 412
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.94 E-value=0.0097 Score=47.58 Aligned_cols=94 Identities=15% Similarity=0.141 Sum_probs=53.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCC------ccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEE
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD------DRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~------~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vl 141 (355)
.+.|.||.|+||||+++.++..+.... .-+.++... ..+....+.. . .+..-.. +.+++
T Consensus 28 ~~~i~G~nGsGKStLl~~l~G~~~~~~---G~i~~~~~~~i~~~~~lS~G~~~rv-~-laral~~----------~p~il 92 (144)
T cd03221 28 RIGLVGRNGAGKSTLLKLIAGELEPDE---GIVTWGSTVKIGYFEQLSGGEKMRL-A-LAKLLLE----------NPNLL 92 (144)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCCCCc---eEEEECCeEEEEEEccCCHHHHHHH-H-HHHHHhc----------CCCEE
Confidence 389999999999999999988753211 111111110 0111111111 1 1111111 23499
Q ss_pred EEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCc
Q psy17903 142 ILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVS 178 (355)
Q Consensus 142 iiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 178 (355)
++||.. .+.......+.+.+.+.. ..+++++++.+
T Consensus 93 llDEP~~~LD~~~~~~l~~~l~~~~--~til~~th~~~ 128 (144)
T cd03221 93 LLDEPTNHLDLESIEALEEALKEYP--GTVILVSHDRY 128 (144)
T ss_pred EEeCCccCCCHHHHHHHHHHHHHcC--CEEEEEECCHH
Confidence 999985 667777778888887652 35666776654
No 413
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.93 E-value=0.012 Score=64.48 Aligned_cols=123 Identities=17% Similarity=0.202 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC--CccccceeeecCCCccchHHHHH------HHHHHH
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG--DMYRERILELNASDDRGIQVIRD------KVKTFA 121 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~i~~------~i~~~~ 121 (355)
.+.....+..++.... ..++|.|.+|+|||++++.+...+.. ..-...++-+ ++...-...+.+ .+..+.
T Consensus 969 t~~Q~~Av~~il~s~d-r~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~gl-APTgrAAk~L~e~Gi~A~TI~s~L 1046 (1747)
T PRK13709 969 TSGQRAATRMILESTD-RFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGL-GPTHRAVGEMRSAGVDAQTLASFL 1046 (1747)
T ss_pred CHHHHHHHHHHHhCCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEE-CCcHHHHHHHHhcCcchhhHHHHh
Confidence 4556666666665432 34899999999999999999887631 1111122222 221111111111 112221
Q ss_pred HhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecC
Q psy17903 122 QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (355)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 176 (355)
............+.....++||||+..+.......|++.++. .++.+||+++.
T Consensus 1047 ~~~~~~~~~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~--~garvVLVGD~ 1099 (1747)
T PRK13709 1047 HDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVSSGDT 1099 (1747)
T ss_pred cccccccccccCCCCCCcEEEEEccccccHHHHHHHHHhhhc--CCCEEEEecch
Confidence 110000000011112456999999999998888888888874 34678888863
No 414
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.92 E-value=0.0058 Score=55.37 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|+||+||||+++.+++.+
T Consensus 5 iil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 5 ILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEcCCCCCHHHHHHHHHHHC
Confidence 7899999999999999999987
No 415
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.92 E-value=0.0065 Score=48.96 Aligned_cols=20 Identities=30% Similarity=0.652 Sum_probs=19.0
Q ss_pred EECCCCCCHHHHHHHHHHHh
Q psy17903 71 FYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 71 l~Gp~G~GKt~la~~l~~~l 90 (355)
|.||||+||+|+++.+++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~ 20 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY 20 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhc
Confidence 68999999999999999997
No 416
>PRK05973 replicative DNA helicase; Provisional
Probab=96.91 E-value=0.0062 Score=52.82 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.|+||+|||+++..++....
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a 89 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAM 89 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999887653
No 417
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.91 E-value=0.0022 Score=50.31 Aligned_cols=24 Identities=29% Similarity=0.270 Sum_probs=22.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|.|+.|+|||++++.+++.+..
T Consensus 25 i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 25 VLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCC
Confidence 899999999999999999999853
No 418
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=96.90 E-value=0.012 Score=63.79 Aligned_cols=123 Identities=17% Similarity=0.196 Sum_probs=67.6
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC--CccccceeeecCCCccchHHHH------HHHHHHH
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG--DMYRERILELNASDDRGIQVIR------DKVKTFA 121 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~--~~~~~~~~~~~~~~~~~~~~i~------~~i~~~~ 121 (355)
.+.....+..++...+ ..++|.|.+|+|||++++.+...+.. +.....++-+ ++...-...+. ..+..|.
T Consensus 837 t~~Qr~Av~~iLts~d-r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~gl-APTgkAa~~L~e~Gi~A~TIasfL 914 (1623)
T PRK14712 837 TSGQRAATRMILETSD-RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGL-GPTHRAVGEMRSAGVDAQTLASFL 914 (1623)
T ss_pred CHHHHHHHHHHHhCCC-ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEE-echHHHHHHHHHhCchHhhHHHHh
Confidence 4556666677776432 24899999999999999888776421 1011122222 11111111111 1122222
Q ss_pred HhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecC
Q psy17903 122 QQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (355)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 176 (355)
............+..+..+|||||+..+.......|+..++. ....+||+++.
T Consensus 915 ~~~~~~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~--~garvVLVGD~ 967 (1623)
T PRK14712 915 HDTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAA--GGGRAVASGDT 967 (1623)
T ss_pred ccccchhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhh--CCCEEEEEcch
Confidence 111000000011112456999999999998888888888874 34678888863
No 419
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.89 E-value=0.017 Score=60.78 Aligned_cols=70 Identities=16% Similarity=0.216 Sum_probs=43.7
Q ss_pred cEEEEEeCCCCCCH----HHHHHHHHHhhhc-cCCccEEEEecCCcc--ccccccCCee-eEEecCCCHHHHHHHHHH
Q psy17903 138 FKIVILDEADSMTH----AAQAALRRTMEKE-TKSTRFCLICNYVSC--IIQPLTSRCS-KFRFKPLAENTMLTRLQY 207 (355)
Q Consensus 138 ~~vliiDe~d~l~~----~~~~~Ll~~le~~-~~~~~~Il~~~~~~~--l~~~l~sr~~-~i~~~~~~~~~~~~~l~~ 207 (355)
+-||||||+..|.. +....|.++.... ...+.+|++|.+++. +...|++.+. +|.|+--+..+-..+|-.
T Consensus 1141 ~IVVIIDE~AdLm~~~~kevE~lI~rLAqkGRAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~DSrtILd~ 1218 (1355)
T PRK10263 1141 YIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 1218 (1355)
T ss_pred eEEEEEcChHHHHhhhhHHHHHHHHHHHHHhhhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHHHHHhcCC
Confidence 45899999976643 2223344444433 356778888877652 4444666655 777877777777666643
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.89 E-value=0.0093 Score=51.13 Aligned_cols=21 Identities=19% Similarity=0.368 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~ 88 (355)
.++|+||.|+|||++.+.++.
T Consensus 31 ~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 31 IMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred EEEEECCCCCChHHHHHHHHH
Confidence 389999999999999999884
No 421
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.87 E-value=0.0026 Score=57.44 Aligned_cols=49 Identities=27% Similarity=0.355 Sum_probs=36.4
Q ss_pred CCCCcccc----cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 42 KTIDDVIE----QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 42 ~~~~~~vg----~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.++++++- .+.....|..+++.+ .+++|+|++|+||||+++++.+.+..
T Consensus 106 ~tl~~l~~~g~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 106 FTLDDYVEAGIMTAAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCHHHHHhcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 35566652 234566777777643 36999999999999999999998743
No 422
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.87 E-value=0.0028 Score=58.79 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=23.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
.++|.||+|+|||++++.+++.+...
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhhccc
Confidence 39999999999999999999987544
No 423
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=96.87 E-value=0.0088 Score=51.34 Aligned_cols=48 Identities=17% Similarity=0.216 Sum_probs=33.4
Q ss_pred CcEEEEEeCC-CCCCHHHHHHHHHHhhhc---cCCccEEEEecCCccccccc
Q psy17903 137 PFKIVILDEA-DSMTHAAQAALRRTMEKE---TKSTRFCLICNYVSCIIQPL 184 (355)
Q Consensus 137 ~~~vliiDe~-d~l~~~~~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~l 184 (355)
+-.++|+||. +.|.......|++++++. +..+.+|++|...+.+.+-+
T Consensus 189 ~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~ 240 (257)
T COG1119 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCF 240 (257)
T ss_pred CCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhccccc
Confidence 3359999995 556666667777777653 33566888898887776554
No 424
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.87 E-value=0.0024 Score=57.21 Aligned_cols=23 Identities=30% Similarity=0.603 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.||+|+||||++..++..+.
T Consensus 197 i~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 197 IALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998874
No 425
>PRK07667 uridine kinase; Provisional
Probab=96.86 E-value=0.0026 Score=53.70 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=28.2
Q ss_pred HHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCcc
Q psy17903 57 LKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (355)
Q Consensus 57 l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~ 95 (355)
+.+.+...+... +.|.|++|+||||+++.++..+.....
T Consensus 6 ~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~ 46 (193)
T PRK07667 6 LINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQEGI 46 (193)
T ss_pred HHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCC
Confidence 334444333333 889999999999999999999865433
No 426
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.86 E-value=0.0096 Score=54.22 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=34.7
Q ss_pred CCCCcccc----cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 42 KTIDDVIE----QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 42 ~~~~~~vg----~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++++++. .+...+.|..+++.+ .+++|+|++|+||||++++++..+
T Consensus 122 ~tl~~l~~~g~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 122 FTLDQYVERGIMTAAQREAIIAAVRAH--RNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCHHHHHhcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhh
Confidence 35566652 234556666666644 469999999999999999999875
No 427
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.85 E-value=0.015 Score=48.23 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=30.4
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCccc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 180 (355)
+.+++++||.- .|.......+.+.+.+......+|+++++...+
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 44699999985 666677777777776554455677777766543
No 428
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.84 E-value=0.003 Score=56.03 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=37.0
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCccccceee-----ecCC---CccchHHHHHHHHHHHHhhccCCCCCCCCCCCc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILE-----LNAS---DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPF 138 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~-----~~~~---~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 138 (355)
|-++|+|-||+|||++|+.+...+....+...++. ++.. +......++..+......... ..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls----------~~ 71 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALS----------KD 71 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHT----------T-
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhc----------cC
Confidence 44899999999999999999998865333221211 1111 112233444444444333322 22
Q ss_pred EEEEEeCCCCCC
Q psy17903 139 KIVILDEADSMT 150 (355)
Q Consensus 139 ~vliiDe~d~l~ 150 (355)
.+||+|+...+.
T Consensus 72 ~iVI~Dd~nYiK 83 (270)
T PF08433_consen 72 TIVILDDNNYIK 83 (270)
T ss_dssp SEEEE-S---SH
T ss_pred eEEEEeCCchHH
Confidence 499999998774
No 429
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.83 E-value=0.0012 Score=53.36 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++++|.||+||||+++.+. .+
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~l 23 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-EL 23 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-Hh
Confidence 47899999999999999999 66
No 430
>PRK06217 hypothetical protein; Validated
Probab=96.83 E-value=0.0013 Score=54.92 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=22.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.++|.|++|+||||+++.+++.++.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~ 27 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDI 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4899999999999999999999843
No 431
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.83 E-value=0.0092 Score=49.46 Aligned_cols=41 Identities=17% Similarity=0.182 Sum_probs=27.8
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCccEEEEecCCc
Q psy17903 138 FKIVILDEAD-SMTHAAQAALRRTMEKET-KSTRFCLICNYVS 178 (355)
Q Consensus 138 ~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 178 (355)
.+++++||.- .+.......+.+.+.+.. ....+|+++++.+
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 4699999974 566666777777766532 2455677777665
No 432
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.82 E-value=0.012 Score=48.24 Aligned_cols=97 Identities=19% Similarity=0.225 Sum_probs=53.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc--h-HHHH--------------HHHHHHHHhhccCCCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG--I-QVIR--------------DKVKTFAQQTASGFNQ 130 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~-~~i~--------------~~i~~~~~~~~~~~~~ 130 (355)
.+.|.||.|+||||+++.++...... . .-+.++..+... . +..+ ..+. ++....
T Consensus 28 ~~~l~G~nGsGKSTLl~~i~G~~~~~--~-G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~-laral~----- 98 (163)
T cd03216 28 VHALLGENGAGKSTLMKILSGLYKPD--S-GEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVE-IARALA----- 98 (163)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC--C-eEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHH-HHHHHh-----
Confidence 48999999999999999998765321 1 112232211110 0 0000 0000 010000
Q ss_pred CCCCCCCcEEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCccEEEEecCCc
Q psy17903 131 DGKPCPPFKIVILDEAD-SMTHAAQAALRRTMEKET-KSTRFCLICNYVS 178 (355)
Q Consensus 131 ~~~~~~~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 178 (355)
.+.+++++||.. .|.......+.+.+.+.. ....+|+++++..
T Consensus 99 -----~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 143 (163)
T cd03216 99 -----RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD 143 (163)
T ss_pred -----cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 133599999975 566677777777776542 2445666776654
No 433
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.81 E-value=0.0038 Score=57.47 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=25.2
Q ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 64 ADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 64 ~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
|+....+|+||+|+|||++++.+++.+...
T Consensus 131 GkGQR~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 131 GKGQRGLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 444458999999999999999999988553
No 434
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.80 E-value=0.0045 Score=55.15 Aligned_cols=35 Identities=26% Similarity=0.297 Sum_probs=25.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeec
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 103 (355)
+.|.||+|+||||++..++..+.....+..++..|
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 88889999999999999998875443333333333
No 435
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.80 E-value=0.0025 Score=53.06 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=29.6
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccC--CccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETK--STRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 178 (355)
+.+++++||.- .|.......+.+.+.+... ...+|+++++..
T Consensus 115 ~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~ 159 (180)
T cd03214 115 EPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN 159 (180)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44699999975 6677777788887776433 456677777654
No 436
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.79 E-value=0.004 Score=60.30 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++++|+||+||||+|+.++...
T Consensus 372 Vil~G~pGSGKST~A~~l~~~~ 393 (526)
T TIGR01663 372 VIAVGFPGAGKSHFCKKFFQPA 393 (526)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 9999999999999999999875
No 437
>KOG0479|consensus
Probab=96.79 E-value=0.0086 Score=57.28 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=83.3
Q ss_pred cccccHHHHHHHHHHHhcCC---------CC---eEEEECCCCCCHHHHHHHHHHHhcCCc----cccceeeecCCCccc
Q psy17903 46 DVIEQQEVVSVLKKCLSGAD---------LP---HFLFYGPPGTGKTSTMIAACHQLFGDM----YRERILELNASDDRG 109 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~~~---------~~---~~ll~Gp~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~~~~ 109 (355)
.+.|++.+++.|.-++-+|. .. ++|+.|.|.+.|+.|.+.+.+...... ....-+-+.++-...
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD 381 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTD 381 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeec
Confidence 36799999888876664331 11 399999999999999999988642110 000001111110000
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-------------CCccEEEEecC
Q psy17903 110 IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTRFCLICNY 176 (355)
Q Consensus 110 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~ 176 (355)
.+.=...++. +. ...++++||+|||+|.|+.-..-++-++||+.. ..|-++.++|.
T Consensus 382 ~eTGERRLEA----GA-------MVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANP 450 (818)
T KOG0479|consen 382 QETGERRLEA----GA-------MVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANP 450 (818)
T ss_pred cccchhhhhc----Cc-------eEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCc
Confidence 0000001111 10 111467799999999999988889999998642 34667777774
Q ss_pred Cc-------------cccccccCCeee--EEecCCCH
Q psy17903 177 VS-------------CIIQPLTSRCSK--FRFKPLAE 198 (355)
Q Consensus 177 ~~-------------~l~~~l~sr~~~--i~~~~~~~ 198 (355)
.. .+...|.||+.. |.+...+.
T Consensus 451 vyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~ 487 (818)
T KOG0479|consen 451 VYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDA 487 (818)
T ss_pred cccccCCCCChhhccCCcHHHHhhhcEEEEEeccccc
Confidence 31 145678899874 33344443
No 438
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.79 E-value=0.0097 Score=48.95 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
++++|++|+|||++|..++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 589999999999999999877
No 439
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.79 E-value=0.002 Score=58.53 Aligned_cols=50 Identities=20% Similarity=0.270 Sum_probs=39.7
Q ss_pred CCC-cccccHHHHHHHHHHHhc----CCCCe--EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 43 TID-DVIEQQEVVSVLKKCLSG----ADLPH--FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 43 ~~~-~~vg~~~~~~~l~~~l~~----~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.|+ ++.|.++.+.+|...++. ..... ++|.||.|+|||++++.+.+.+..
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 355 899999999888777643 22222 999999999999999999998843
No 440
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.78 E-value=0.019 Score=46.18 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|+|++|+|||++++.++..+.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999984
No 441
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.76 E-value=0.0032 Score=55.89 Aligned_cols=51 Identities=25% Similarity=0.376 Sum_probs=39.1
Q ss_pred CCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
+.+++++.-.+...+.|.+++.... ..++|.||+|+||||++.++...+..
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~~~-GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEKPH-GIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 3456666666777788888776432 24999999999999999999888754
No 442
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=96.76 E-value=0.0079 Score=48.93 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+++.|++|+|||+++..+...-
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~ 24 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDG 24 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999887643
No 443
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.75 E-value=0.0018 Score=52.21 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++++|++|+|||++++.+++.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~ 24 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG 24 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999983
No 444
>KOG0086|consensus
Probab=96.75 E-value=0.02 Score=45.08 Aligned_cols=95 Identities=21% Similarity=0.280 Sum_probs=57.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccc--------cce-------eeecCCCccchHHHHHHHHHHHHhhccCCCCCCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYR--------ERI-------LELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~--------~~~-------~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 133 (355)
+++.|+.|+||+.+...+.+.-..+..+ ..+ +.+...+..+.+.++.....+.....
T Consensus 12 fl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAA-------- 83 (214)
T KOG0086|consen 12 FLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAA-------- 83 (214)
T ss_pred eEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhcccc--------
Confidence 7999999999999999888765443211 111 22222334455666665555543321
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHhhh----ccCCccEEEEecCCc
Q psy17903 134 PCPPFKIVILDEADSMTHAAQAALRRTMEK----ETKSTRFCLICNYVS 178 (355)
Q Consensus 134 ~~~~~~vliiDe~d~l~~~~~~~Ll~~le~----~~~~~~~Il~~~~~~ 178 (355)
+ -+++-|+ -+.+..++|-+.|.+ .+++.++|+++|..+
T Consensus 84 ----G-AlLVYD~--TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkD 125 (214)
T KOG0086|consen 84 ----G-ALLVYDI--TSRDSFNALTNWLTDARTLASPNIVVILCGNKKD 125 (214)
T ss_pred ----c-eEEEEec--cchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhh
Confidence 1 3444444 356778888877765 356777888877543
No 445
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.75 E-value=0.0035 Score=50.57 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=35.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC--CccchHHHHHHHHHHHHhh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS--DDRGIQVIRDKVKTFAQQT 124 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~i~~~~~~~ 124 (355)
++|+||+|||||++.+++|...... ...+.+.+. ...+++.++..+....+.+
T Consensus 32 iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~p 86 (223)
T COG4619 32 IAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGEDVSTLKPEAYRQQVSYCAQTP 86 (223)
T ss_pred EEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCccccccChHHHHHHHHHHHcCc
Confidence 8999999999999999999876322 122333333 3345667777666655443
No 446
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.75 E-value=0.012 Score=50.37 Aligned_cols=100 Identities=14% Similarity=0.189 Sum_probs=56.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccc---------------eeeecCCCccchHHHHHHHHHHHHhhccCCCCCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRER---------------ILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~---------------~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~ 132 (355)
.++++|++|+|||+++.++.+......+... .+.+...+..+...++.....+...+
T Consensus 7 kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~-------- 78 (219)
T COG1100 7 KIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGA-------- 78 (219)
T ss_pred EEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCC--------
Confidence 3899999999999999999988765322111 11122234445566655554443322
Q ss_pred CCCCCcEEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCccEEEEecCCcc
Q psy17903 133 KPCPPFKIVILDEAD-SMTHAAQAALRRTMEKET-KSTRFCLICNYVSC 179 (355)
Q Consensus 133 ~~~~~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~ 179 (355)
..-+++.|..+ .-..+....+...+.+.. ....++++.|..+.
T Consensus 79 ----~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl 123 (219)
T COG1100 79 ----NGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDL 123 (219)
T ss_pred ----CEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEeccccc
Confidence 22255666554 223333444444444333 35677778876553
No 447
>PRK13949 shikimate kinase; Provisional
Probab=96.75 E-value=0.0016 Score=53.68 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=22.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+++|.|++|+|||++++.+++.+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999983
No 448
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.74 E-value=0.002 Score=57.52 Aligned_cols=51 Identities=24% Similarity=0.389 Sum_probs=38.0
Q ss_pred CCCcccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
+++++.-.......+.+++... ...+++|.|++|+||||++.++...+...
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 6778876665555666555543 12359999999999999999999988654
No 449
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.73 E-value=0.0017 Score=54.30 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.0
Q ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 66 LPHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 66 ~~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+-++|.|+||+||||+++.+++.++
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g 28 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYG 28 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34589999999999999999998873
No 450
>COG3910 Predicted ATPase [General function prediction only]
Probab=96.72 E-value=0.036 Score=45.67 Aligned_cols=51 Identities=16% Similarity=0.180 Sum_probs=35.8
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 40 RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 40 ~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+|.+|++....=.+++.+..-++- +.|--+|.|+.|+||||++.+++-...
T Consensus 12 kve~~~eYp~slPa~r~l~~~LeF-~apIT~i~GENGsGKSTLLEaiA~~~~ 62 (233)
T COG3910 12 KVESFEEYPFSLPAFRHLEERLEF-RAPITFITGENGSGKSTLLEAIAAGMG 62 (233)
T ss_pred cccchhhCcccchHHHhhhhhccc-cCceEEEEcCCCccHHHHHHHHHhhcc
Confidence 455666666555566666653322 234479999999999999999998764
No 451
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=96.72 E-value=0.027 Score=45.44 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=40.7
Q ss_pred ECCCCCCHHHHHHHHHHHhcCCccccceee-ecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC
Q psy17903 72 YGPPGTGKTSTMIAACHQLFGDMYRERILE-LNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150 (355)
Q Consensus 72 ~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~ 150 (355)
.+..||||||++.+|.+-+.. |. .+. =|........-+...+..+... +..+||+|--..+.
T Consensus 5 IAtiGCGKTTva~aL~~LFg~--wg--HvQnDnI~~k~~~~f~~~~l~~L~~~-------------~~~vViaDRNNh~~ 67 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE--WG--HVQNDNITGKRKPKFIKAVLELLAKD-------------THPVVIADRNNHQK 67 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC--CC--ccccCCCCCCCHHHHHHHHHHHHhhC-------------CCCEEEEeCCCchH
Confidence 578999999999999988742 21 111 1111112222333334433211 34599999887776
Q ss_pred HHHHHHHHHHhhh
Q psy17903 151 HAAQAALRRTMEK 163 (355)
Q Consensus 151 ~~~~~~Ll~~le~ 163 (355)
.+.. .|...++.
T Consensus 68 reR~-ql~~~~~~ 79 (168)
T PF08303_consen 68 RERK-QLFEDVSQ 79 (168)
T ss_pred HHHH-HHHHHHHH
Confidence 5433 44444443
No 452
>PRK14531 adenylate kinase; Provisional
Probab=96.71 E-value=0.0018 Score=54.15 Aligned_cols=24 Identities=38% Similarity=0.735 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+++.||||+||||+++.+++.++
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999974
No 453
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0017 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.715 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|.||||+||||+|+.+++.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37999999999999999999996
No 454
>PLN02674 adenylate kinase
Probab=96.70 E-value=0.032 Score=48.63 Aligned_cols=25 Identities=24% Similarity=0.522 Sum_probs=22.7
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++++|.||||+||+|.++.+++.++
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~ 56 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYC 56 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcC
Confidence 4599999999999999999999873
No 455
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.70 E-value=0.014 Score=48.05 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=29.9
Q ss_pred cEEEEEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCccc
Q psy17903 138 FKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180 (355)
Q Consensus 138 ~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l 180 (355)
.+++++||-- .|.......+.+.+.+......+|+++++...+
T Consensus 115 p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 115 PPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 3599999975 666677777777776654446677777766543
No 456
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.69 E-value=0.015 Score=55.71 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.||.|+||||++..++..+.
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHHH
Confidence 89999999999999999998763
No 457
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.68 E-value=0.015 Score=65.17 Aligned_cols=124 Identities=17% Similarity=0.268 Sum_probs=70.3
Q ss_pred cccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHH-------
Q psy17903 46 DVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK------- 118 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~------- 118 (355)
.+.-.+.....+..++.+.. .-.+|.|++|+|||++++.+...+..... .+.-+. +.......+.+...
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~-~v~ii~G~aGTGKTt~l~~l~~~~~~~G~--~V~~lA-PTgrAA~~L~e~~g~~A~Ti~ 502 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTK-RFIIINGFGGTGSTEIAQLLLHLASEQGY--EIQIIT-AGSLSAQELRQKIPRLASTFI 502 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCC-CeEEEEECCCCCHHHHHHHHHHHHHhcCC--eEEEEe-CCHHHHHHHHHHhcchhhhHH
Confidence 34445666777777776542 24899999999999999999988754332 233222 22111122221110
Q ss_pred HHHHhhcc--------CCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEec
Q psy17903 119 TFAQQTAS--------GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175 (355)
Q Consensus 119 ~~~~~~~~--------~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 175 (355)
.+...... ++.....+..+..+|||||+..+.......|++..+. .+..+||.++
T Consensus 503 ~~l~~l~~~~~~~tv~~fl~~~~~l~~~~vlIVDEAsMl~~~~~~~Ll~~a~~--~garvVlvGD 565 (1960)
T TIGR02760 503 TWVKNLFNDDQDHTVQGLLDKSSPFSNKDIFVVDEANKLSNNELLKLIDKAEQ--HNSKLILLND 565 (1960)
T ss_pred HHHHhhcccccchhHHHhhcccCCCCCCCEEEEECCCCCCHHHHHHHHHHHhh--cCCEEEEEcC
Confidence 00000000 0000011112456999999999998888888887763 3456676665
No 458
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.67 E-value=0.008 Score=54.76 Aligned_cols=63 Identities=14% Similarity=0.105 Sum_probs=41.1
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCC----ccccceeeecCCCccchHHHHHHHH
Q psy17903 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGD----MYRERILELNASDDRGIQVIRDKVK 118 (355)
Q Consensus 56 ~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~i~~~i~ 118 (355)
.+...+.+|-... ++|+||||+|||+++..++.....+ ..+..+++++.......+.+.+...
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~~~~~ 151 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIMQMAE 151 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHHHHHH
Confidence 3445555553333 8999999999999999998775321 1223677888766555555554443
No 459
>KOG3928|consensus
Probab=96.66 E-value=0.11 Score=48.03 Aligned_cols=50 Identities=8% Similarity=0.048 Sum_probs=35.2
Q ss_pred CeeeEEecCCCHHHHHHHHHHHHHHcCC--CC-CHHHHHHHHHHcCCCHHHHH
Q psy17903 187 RCSKFRFKPLAENTMLTRLQYICEQESV--MC-DFKALETLVETSGGDMRRAI 236 (355)
Q Consensus 187 r~~~i~~~~~~~~~~~~~l~~~~~~~~~--~~-~~~~~~~l~~~~~g~~r~~~ 236 (355)
.+..++..+++.+|...++..+....=+ .+ .++....+.-.++||++...
T Consensus 402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~Ee~~kql~fLSngNP~l~~ 454 (461)
T KOG3928|consen 402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPGEENIKQLYFLSNGNPSLME 454 (461)
T ss_pred CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCcccchhhhhhhcCCCHHHHH
Confidence 3447888999999999988877765321 22 35666777777899995443
No 460
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=96.66 E-value=0.0085 Score=48.99 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+++.|++|+|||+++..+...
T Consensus 2 i~ivG~~~vGKTsli~~~~~~ 22 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSE 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999875
No 461
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=96.66 E-value=0.002 Score=52.48 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=23.4
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.+++|.|++|+||||+.+.+++.++-
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~ 28 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNL 28 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCC
Confidence 45899999999999999999999943
No 462
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.65 E-value=0.0087 Score=53.43 Aligned_cols=24 Identities=25% Similarity=0.483 Sum_probs=21.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|.||+|+|||+++..+++.++.
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~ 25 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNA 25 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCC
Confidence 689999999999999999999743
No 463
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.64 E-value=0.0037 Score=53.25 Aligned_cols=27 Identities=30% Similarity=0.444 Sum_probs=21.4
Q ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 66 LPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 66 ~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.+|+++.|++|+|||++++.+...+..
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~ 64 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLAL 64 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHH
Confidence 358999999999999999998888765
No 464
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.64 E-value=0.0022 Score=53.19 Aligned_cols=25 Identities=24% Similarity=0.221 Sum_probs=22.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.++|.|+||+||||+++.+++.+..
T Consensus 4 ~i~l~G~~gsGKst~a~~l~~~~~~ 28 (175)
T cd00227 4 IIILNGGSSAGKSSIARALQSVLAE 28 (175)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3899999999999999999998743
No 465
>PRK14530 adenylate kinase; Provisional
Probab=96.64 E-value=0.0019 Score=55.47 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=22.8
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.++|.||||+||||+++.+++.+.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~ 28 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFG 28 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999984
No 466
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.63 E-value=0.0014 Score=53.54 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=20.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.||+|+||||+++.+++.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999997
No 467
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.62 E-value=0.0076 Score=52.12 Aligned_cols=47 Identities=23% Similarity=0.436 Sum_probs=32.6
Q ss_pred HHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC
Q psy17903 57 LKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (355)
Q Consensus 57 l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 105 (355)
|-+.+.+|-.+. ++|+|+||+|||+++..++....... ..++.++..
T Consensus 12 lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~--~~v~yi~~e 60 (225)
T PRK09361 12 LDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNG--KKVIYIDTE 60 (225)
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCC--CeEEEEECC
Confidence 445555554444 89999999999999999998764332 345555554
No 468
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.62 E-value=0.0017 Score=51.87 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.+.|||||||||+++.+++.++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 57899999999999999999984
No 469
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=96.62 E-value=0.04 Score=51.83 Aligned_cols=90 Identities=16% Similarity=0.254 Sum_probs=51.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEAD 147 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d 147 (355)
|++=.||.|||||++-+.+... ..-+++... ....+ +-.... ...|-. ..+.+|++||+.
T Consensus 210 NliELgPrGTGKS~vy~eiSp~---------~~liSGG~~-T~A~L---Fyn~~~------~~~GlV-~~~D~VafDEv~ 269 (457)
T PF13337_consen 210 NLIELGPRGTGKSYVYKEISPY---------GILISGGQV-TVAKL---FYNMST------GQIGLV-GRWDVVAFDEVA 269 (457)
T ss_pred ceEEEcCCCCCceeehhhcCcc---------cEEEECCCc-chHHh---eeeccC------Ccceee-eeccEEEEEecc
Confidence 5899999999999986655322 223333321 11111 101000 001111 145699999999
Q ss_pred CCC---HHHHHHHHHHhhhcc---------CCccEEEEecCC
Q psy17903 148 SMT---HAAQAALRRTMEKET---------KSTRFCLICNYV 177 (355)
Q Consensus 148 ~l~---~~~~~~Ll~~le~~~---------~~~~~Il~~~~~ 177 (355)
.+. ++..+.|..+|+.+. ...-+||.+|-.
T Consensus 270 ~i~f~d~d~i~imK~YMesG~fsRG~~~i~a~as~vf~GNi~ 311 (457)
T PF13337_consen 270 GIKFKDKDEIQIMKDYMESGSFSRGKEEINADASMVFVGNIN 311 (457)
T ss_pred CcccCChHHHHHHHHHHhccceeecccccccceeEEEEcCcC
Confidence 886 455677888887542 345677888744
No 470
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.61 E-value=0.014 Score=56.65 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=29.6
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 55 SVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 55 ~~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
..|.+.+.+|-.+. +|+.||||+|||+++..++....
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~ 288 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENAC 288 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 44556666665555 99999999999999999988763
No 471
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.61 E-value=0.0063 Score=52.84 Aligned_cols=41 Identities=20% Similarity=0.182 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 52 EVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 52 ~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.+.+.|..+......+. +.|.||+|+||||+++.++..+..
T Consensus 18 ~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~ 59 (229)
T PRK09270 18 PLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ 59 (229)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 34455666655433344 999999999999999999998854
No 472
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.60 E-value=0.011 Score=55.70 Aligned_cols=25 Identities=28% Similarity=0.382 Sum_probs=22.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
++|+|++|+||||++..++..+...
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 9999999999999999999887543
No 473
>PRK10867 signal recognition particle protein; Provisional
Probab=96.60 E-value=0.024 Score=53.71 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
++++|++|+||||++..++..+...
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh
Confidence 9999999999999999999877543
No 474
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.59 E-value=0.011 Score=48.49 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=28.7
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 178 (355)
+.+++++||-. .+.......+.+.+.+. ...+|+++++..
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~ 149 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence 34599999985 56677788888888765 245666777654
No 475
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.59 E-value=0.0053 Score=53.31 Aligned_cols=53 Identities=26% Similarity=0.378 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCC
Q psy17903 54 VSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (355)
Q Consensus 54 ~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 106 (355)
.+.|..........+ +=|+||||.||||++.++...+.....+..++.+|++.
T Consensus 16 ~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSS 69 (266)
T PF03308_consen 16 RELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSS 69 (266)
T ss_dssp HHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGG
T ss_pred HHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCC
Confidence 344444443322234 88999999999999999999987666666777787765
No 476
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=96.57 E-value=0.0069 Score=54.76 Aligned_cols=24 Identities=33% Similarity=0.602 Sum_probs=22.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|.||+|+|||+++..+++.+.+
T Consensus 7 i~i~GptgsGKt~la~~la~~~~~ 30 (307)
T PRK00091 7 IVIVGPTASGKTALAIELAKRLNG 30 (307)
T ss_pred EEEECCCCcCHHHHHHHHHHhCCC
Confidence 899999999999999999999854
No 477
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.56 E-value=0.026 Score=46.08 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=20.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
..+++||.|+|||+++++++-.+.
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~ 46 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALG 46 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999766554
No 478
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.56 E-value=0.025 Score=46.76 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=29.0
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKET-KSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 178 (355)
+.+++++||.- .|.......+.+.+.+.. ....+|+++++..
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 34599999975 667777777777776543 2456777777664
No 479
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.55 E-value=0.0046 Score=53.53 Aligned_cols=33 Identities=33% Similarity=0.504 Sum_probs=24.4
Q ss_pred HHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHH
Q psy17903 57 LKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 57 l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~ 89 (355)
|-+.+.+|-+++ ++++||||+|||+++..++..
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~ 42 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYN 42 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHH
Confidence 344454554443 999999999999999887754
No 480
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.55 E-value=0.0027 Score=53.40 Aligned_cols=22 Identities=32% Similarity=0.674 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|+||+||||+++.+++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999986
No 481
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=96.54 E-value=0.032 Score=45.38 Aligned_cols=22 Identities=23% Similarity=0.537 Sum_probs=19.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.+++.|++|+|||+++.++...
T Consensus 4 ki~i~G~~~vGKSsli~~~~~~ 25 (166)
T cd01869 4 KLLLIGDSGVGKSCLLLRFADD 25 (166)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999998764
No 482
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.53 E-value=0.0028 Score=52.56 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=23.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
.++|.|++|+||||+++.+++.+...
T Consensus 9 ~I~i~G~~GsGKst~a~~l~~~l~~~ 34 (176)
T PRK05541 9 VIWITGLAGSGKTTIAKALYERLKLK 34 (176)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 39999999999999999999998543
No 483
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.53 E-value=0.0082 Score=54.60 Aligned_cols=54 Identities=19% Similarity=0.399 Sum_probs=38.1
Q ss_pred ccccCCC--CCCcccc----cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 36 VEKYRPK--TIDDVIE----QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 36 ~~k~~p~--~~~~~vg----~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
..|+++. ++++++. .+.....|..+++.+ .+++|+|++|+||||+++++...+.
T Consensus 110 IRk~~~~~~tl~~lv~~g~~~~~~~~~L~~~v~~~--~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 110 IRRRASRLIPLDDYVTSKIMTEAQASVIRSAIDSR--LNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred EECcCCCCCCHHHHHHcCCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHHh
Confidence 4444433 4455552 234556677777754 3699999999999999999999874
No 484
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.014 Score=54.93 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||+|+||||++..++..+
T Consensus 194 i~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 194 YALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 9999999999999999998764
No 485
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.52 E-value=0.014 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.270 Sum_probs=22.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
+-|.|++|+||||+++.++..+..+
T Consensus 11 IgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 11 IGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 7899999999999999999999754
No 486
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.51 E-value=0.011 Score=54.07 Aligned_cols=64 Identities=17% Similarity=0.161 Sum_probs=41.5
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCC----ccccceeeecCCCccchHHHHHHHH
Q psy17903 55 SVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGD----MYRERILELNASDDRGIQVIRDKVK 118 (355)
Q Consensus 55 ~~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~~~~~~~~~i~~~i~ 118 (355)
..+.+.+.+|-... +.|+||||+|||+++..++...... ..+..+++++.......+.+.+...
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~ 158 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAE 158 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHH
Confidence 34445555554444 8899999999999999998764321 1234677777766555555555443
No 487
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.51 E-value=0.004 Score=41.59 Aligned_cols=26 Identities=35% Similarity=0.592 Sum_probs=23.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
..+|+||.|+||||+..++.-.+.+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L~~~ 50 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVLYGN 50 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 48999999999999999999888654
No 488
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.50 E-value=0.016 Score=56.91 Aligned_cols=24 Identities=25% Similarity=0.468 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+.|.||+|+||||+++.+++...
T Consensus 363 ~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 363 RVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 499999999999999999987653
No 489
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.50 E-value=0.0032 Score=54.50 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.||||+||||+++.+++.++
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g 31 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKEN 31 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999973
No 490
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.49 E-value=0.0053 Score=51.45 Aligned_cols=39 Identities=21% Similarity=0.200 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 51 QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.....|...++.+. .++|.||+|+||||++++++..+.
T Consensus 12 ~~~~~~l~~~v~~g~--~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 12 PLQAAYLWLAVEARK--NILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhcC
Confidence 355666777777653 599999999999999999998764
No 491
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.48 E-value=0.0081 Score=51.92 Aligned_cols=34 Identities=29% Similarity=0.266 Sum_probs=25.7
Q ss_pred HHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHh
Q psy17903 57 LKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 57 l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l 90 (355)
|.+.+.+|-++. +++.|+||+|||+++..++...
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~ 40 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQG 40 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 444555554333 9999999999999999888764
No 492
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=96.48 E-value=0.016 Score=46.60 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+++.|++|+|||+++.++...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999999754
No 493
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.48 E-value=0.0028 Score=51.08 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=24.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCcc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~ 95 (355)
+.|+|.+|+||||+|+++.+.|.....
T Consensus 5 IwltGlsGsGKtTlA~~L~~~L~~~g~ 31 (156)
T PF01583_consen 5 IWLTGLSGSGKTTLARALERRLFARGI 31 (156)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 899999999999999999999976544
No 494
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=96.48 E-value=0.04 Score=44.49 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=19.4
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+++.|++|+|||+++..+...
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999999864
No 495
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.47 E-value=0.005 Score=59.41 Aligned_cols=53 Identities=25% Similarity=0.340 Sum_probs=41.3
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 40 RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 40 ~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
.+.+++++.-.++..+.+...+.... .-++++||+|+||||++.++.+.+...
T Consensus 217 ~~~~l~~Lg~~~~~~~~l~~~~~~~~-GlilitGptGSGKTTtL~a~L~~l~~~ 269 (486)
T TIGR02533 217 VRLDLETLGMSPELLSRFERLIRRPH-GIILVTGPTGSGKTTTLYAALSRLNTP 269 (486)
T ss_pred CCCCHHHcCCCHHHHHHHHHHHhcCC-CEEEEEcCCCCCHHHHHHHHHhccCCC
Confidence 34567777667888888888886442 238999999999999999988887543
No 496
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=96.47 E-value=0.013 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=20.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+++.|++|+|||+++..+...-
T Consensus 8 kivvvG~~~vGKTsli~~l~~~~ 30 (199)
T cd04110 8 KLLIIGDSGVGKSSLLLRFADNT 30 (199)
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 39999999999999999997653
No 497
>PRK08233 hypothetical protein; Provisional
Probab=96.47 E-value=0.0024 Score=53.14 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.|++|+||||+++.++..+.
T Consensus 6 I~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 6 ITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 78899999999999999999974
No 498
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.47 E-value=0.015 Score=57.82 Aligned_cols=42 Identities=24% Similarity=0.366 Sum_probs=29.6
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 178 (355)
+.+++++||.- .+.++....+.+.+.+...+..+|+++++.+
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~ 540 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 55799999985 5566666777777776555566777777663
No 499
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.46 E-value=0.011 Score=59.55 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=30.0
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 178 (355)
+.+|+++||+- .|..+....+...|.+...+..+|+++++..
T Consensus 627 ~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ 669 (709)
T COG2274 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLS 669 (709)
T ss_pred CCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccch
Confidence 45699999995 5566666777777776665566777777654
No 500
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.45 E-value=0.019 Score=47.65 Aligned_cols=96 Identities=16% Similarity=0.143 Sum_probs=52.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC------Cc--cchHHHHHHHHHHHHhhccCCCCCCCCCCCcE
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS------DD--RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFK 139 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~------~~--~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~ 139 (355)
.+.|.||.|+||||+++.++..+.... --+.++.. .. .+... +..+. .+..... +.+
T Consensus 27 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~i~~~~q~~~LSgGq-~qrv~-laral~~----------~p~ 91 (177)
T cd03222 27 VIGIVGPNGTGKTTAVKILAGQLIPNG---DNDEWDGITPVYKPQYIDLSGGE-LQRVA-IAAALLR----------NAT 91 (177)
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCC---cEEEECCEEEEEEcccCCCCHHH-HHHHH-HHHHHhc----------CCC
Confidence 388999999999999999998653211 11111110 00 01111 11111 1111110 234
Q ss_pred EEEEeCCC-CCCHHHHHHHHHHhhhcc-C-CccEEEEecCCc
Q psy17903 140 IVILDEAD-SMTHAAQAALRRTMEKET-K-STRFCLICNYVS 178 (355)
Q Consensus 140 vliiDe~d-~l~~~~~~~Ll~~le~~~-~-~~~~Il~~~~~~ 178 (355)
++++||-- .|.......+.+.+.+.. . ...+|+++++..
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 99999985 566677777777775532 1 245666776654
Done!