Query psy17903
Match_columns 355
No_of_seqs 263 out of 2994
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 17:05:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17903.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17903hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sxj_C Activator 1 40 kDa subu 100.0 4E-45 1.4E-49 336.2 34.3 322 23-352 3-332 (340)
2 1sxj_D Activator 1 41 kDa subu 100.0 2.8E-44 9.5E-49 332.2 29.5 323 27-349 19-352 (353)
3 2chq_A Replication factor C sm 100.0 1.1E-42 3.6E-47 317.0 31.3 310 31-350 3-316 (319)
4 1iqp_A RFCS; clamp loader, ext 100.0 2.3E-42 8E-47 315.8 33.5 311 31-351 11-325 (327)
5 3u61_B DNA polymerase accessor 100.0 1.7E-42 5.8E-47 316.7 29.2 302 27-352 8-322 (324)
6 1sxj_B Activator 1 37 kDa subu 100.0 1.3E-41 4.3E-46 310.4 33.8 315 31-353 7-322 (323)
7 1sxj_E Activator 1 40 kDa subu 100.0 2E-41 6.8E-46 313.3 26.2 315 33-351 2-353 (354)
8 1jr3_A DNA polymerase III subu 100.0 7.5E-38 2.6E-42 291.2 35.2 309 32-350 3-359 (373)
9 3pvs_A Replication-associated 100.0 6.3E-33 2.1E-37 262.0 30.9 297 33-348 14-341 (447)
10 2gno_A DNA polymerase III, gam 100.0 3.9E-34 1.3E-38 257.3 21.6 277 49-349 1-296 (305)
11 1a5t_A Delta prime, HOLB; zinc 100.0 5.9E-31 2E-35 240.8 26.4 284 48-350 5-322 (334)
12 2chg_A Replication factor C sm 100.0 8.9E-31 3E-35 225.4 24.7 222 31-261 3-224 (226)
13 1jr3_D DNA polymerase III, del 100.0 1.3E-31 4.5E-36 246.4 18.5 278 57-349 9-333 (343)
14 1njg_A DNA polymerase III subu 100.0 9.9E-29 3.4E-33 215.4 22.6 222 30-261 8-249 (250)
15 1sxj_A Activator 1 95 kDa subu 100.0 6.7E-28 2.3E-32 232.8 20.0 226 27-261 21-272 (516)
16 3pfi_A Holliday junction ATP-d 99.9 1.6E-26 5.4E-31 212.0 20.9 212 29-260 13-251 (338)
17 1hqc_A RUVB; extended AAA-ATPa 99.9 4.8E-25 1.6E-29 200.9 27.4 208 34-260 1-235 (324)
18 3uk6_A RUVB-like 2; hexameric 99.9 4.5E-25 1.5E-29 204.6 24.2 226 29-262 27-329 (368)
19 2c9o_A RUVB-like 1; hexameric 99.9 1.8E-23 6.1E-28 199.0 20.0 124 139-263 297-437 (456)
20 3bos_A Putative DNA replicatio 99.9 1.3E-23 4.4E-28 182.9 17.2 213 30-261 12-241 (242)
21 1in4_A RUVB, holliday junction 99.9 1.1E-22 3.9E-27 185.8 22.3 209 34-262 14-249 (334)
22 1fnn_A CDC6P, cell division co 99.9 1E-21 3.6E-26 183.1 25.9 291 32-327 7-346 (389)
23 2v1u_A Cell division control p 99.9 3.4E-22 1.2E-26 186.1 20.2 230 33-273 10-286 (387)
24 3vfd_A Spastin; ATPase, microt 99.9 1E-21 3.4E-26 183.3 21.9 210 34-261 104-363 (389)
25 2qby_B CDC6 homolog 3, cell di 99.9 1.9E-21 6.6E-26 181.1 20.7 291 31-327 9-334 (384)
26 4b4t_J 26S protease regulatory 99.9 6.5E-21 2.2E-25 174.9 22.5 213 30-261 133-387 (405)
27 3b9p_A CG5977-PA, isoform A; A 99.9 4.4E-21 1.5E-25 172.6 21.0 215 33-265 9-274 (297)
28 2qp9_X Vacuolar protein sortin 99.9 1.1E-21 3.8E-26 180.6 16.9 193 33-243 39-265 (355)
29 3eie_A Vacuolar protein sortin 99.9 2.3E-21 7.9E-26 176.3 18.5 193 32-242 5-231 (322)
30 3syl_A Protein CBBX; photosynt 99.9 1.4E-21 4.6E-26 176.8 16.4 212 30-257 8-280 (309)
31 4b4t_I 26S protease regulatory 99.9 2.8E-20 9.5E-25 171.1 23.1 215 27-261 164-421 (437)
32 1lv7_A FTSH; alpha/beta domain 99.9 1.1E-20 3.9E-25 166.3 19.4 208 34-261 1-250 (257)
33 3d8b_A Fidgetin-like protein 1 99.9 3.1E-20 1E-24 171.2 21.9 190 35-242 74-298 (357)
34 4b4t_M 26S protease regulatory 99.9 2.9E-20 9.9E-25 173.1 21.8 213 33-264 169-423 (434)
35 4b4t_L 26S protease subunit RP 99.9 4.9E-20 1.7E-24 171.7 23.0 209 34-261 170-420 (437)
36 2z4s_A Chromosomal replication 99.9 7.7E-21 2.6E-25 179.7 15.8 214 39-264 98-333 (440)
37 2qby_A CDC6 homolog 1, cell di 99.9 2.3E-20 7.7E-25 173.6 18.6 280 32-326 10-342 (386)
38 4b4t_H 26S protease regulatory 99.9 1.1E-19 3.7E-24 168.8 22.7 211 32-261 196-448 (467)
39 1ofh_A ATP-dependent HSL prote 99.8 4.2E-20 1.4E-24 166.9 19.0 206 45-263 15-299 (310)
40 1xwi_A SKD1 protein; VPS4B, AA 99.8 1.6E-19 5.6E-24 163.8 21.0 189 37-242 4-226 (322)
41 3h4m_A Proteasome-activating n 99.8 8.6E-20 2.9E-24 163.1 18.5 206 37-261 9-256 (285)
42 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2.9E-19 1E-23 157.5 21.3 203 41-261 2-247 (262)
43 4b4t_K 26S protease regulatory 99.8 3.3E-19 1.1E-23 165.9 21.5 210 33-261 160-412 (428)
44 2zan_A Vacuolar protein sortin 99.8 2.2E-19 7.4E-24 170.0 20.5 194 33-243 122-349 (444)
45 1l8q_A Chromosomal replication 99.8 4E-20 1.4E-24 168.4 14.3 202 43-261 9-238 (324)
46 2r44_A Uncharacterized protein 99.8 3.3E-20 1.1E-24 169.4 12.8 219 33-261 15-295 (331)
47 3pxg_A Negative regulator of g 99.8 1E-19 3.4E-24 173.4 15.4 196 30-244 165-383 (468)
48 3te6_A Regulatory protein SIR3 99.8 6.1E-19 2.1E-23 158.1 19.0 198 47-246 22-286 (318)
49 1ojl_A Transcriptional regulat 99.8 5.7E-19 2E-23 158.9 17.7 211 45-259 2-248 (304)
50 2ce7_A Cell division protein F 99.8 1.1E-18 3.9E-23 164.9 20.4 207 35-261 5-254 (476)
51 1g8p_A Magnesium-chelatase 38 99.8 3.4E-19 1.2E-23 163.8 15.3 220 40-261 19-320 (350)
52 2bjv_A PSP operon transcriptio 99.8 1.9E-19 6.4E-24 159.2 12.9 212 43-257 4-251 (265)
53 4fcw_A Chaperone protein CLPB; 99.8 4.4E-19 1.5E-23 160.4 14.4 186 45-244 17-276 (311)
54 3cf0_A Transitional endoplasmi 99.8 2.2E-18 7.5E-23 155.1 17.6 188 37-243 7-233 (301)
55 2r62_A Cell division protease 99.8 7.5E-20 2.6E-24 162.0 4.4 210 37-265 3-255 (268)
56 3hu3_A Transitional endoplasmi 99.8 4.2E-18 1.4E-22 162.3 14.9 216 37-271 196-467 (489)
57 1jbk_A CLPB protein; beta barr 99.8 1.4E-18 4.9E-23 145.2 9.7 163 33-205 10-194 (195)
58 1qvr_A CLPB protein; coiled co 99.8 2.6E-18 9E-23 175.2 13.3 201 32-246 157-392 (854)
59 1r6b_X CLPA protein; AAA+, N-t 99.8 2.3E-17 8E-22 166.6 19.9 222 28-260 169-430 (758)
60 3m6a_A ATP-dependent protease 99.8 3.8E-18 1.3E-22 165.2 13.1 211 45-263 81-341 (543)
61 2dhr_A FTSH; AAA+ protein, hex 99.8 2.1E-17 7.1E-22 157.2 17.3 214 31-261 18-269 (499)
62 3pxi_A Negative regulator of g 99.7 2E-17 6.7E-22 167.0 16.0 196 30-244 165-383 (758)
63 1d2n_A N-ethylmaleimide-sensit 99.7 4E-17 1.4E-21 144.7 15.7 179 45-246 33-249 (272)
64 1ixz_A ATP-dependent metallopr 99.7 1.5E-16 5.2E-21 139.5 18.2 209 36-260 7-253 (254)
65 1um8_A ATP-dependent CLP prote 99.7 6.1E-17 2.1E-21 150.3 14.8 207 46-262 22-364 (376)
66 3k1j_A LON protease, ATP-depen 99.7 2.4E-17 8.1E-22 162.0 12.3 226 34-261 30-373 (604)
67 1iy2_A ATP-dependent metallopr 99.7 2.8E-16 9.5E-21 139.8 17.8 205 40-260 35-277 (278)
68 2p65_A Hypothetical protein PF 99.7 8.9E-18 3E-22 139.8 7.3 154 30-197 7-187 (187)
69 3pxi_A Negative regulator of g 99.7 6.4E-17 2.2E-21 163.2 14.8 186 45-244 491-722 (758)
70 1r6b_X CLPA protein; AAA+, N-t 99.7 1.7E-16 5.8E-21 160.3 15.9 182 45-244 458-713 (758)
71 1w5s_A Origin recognition comp 99.7 2.3E-15 7.9E-20 141.2 21.4 226 33-262 13-292 (412)
72 1qvr_A CLPB protein; coiled co 99.7 8.3E-17 2.9E-21 164.2 9.7 186 45-244 558-817 (854)
73 3hws_A ATP-dependent CLP prote 99.6 1.1E-15 3.9E-20 141.0 12.0 205 46-260 16-346 (363)
74 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 8.8E-15 3E-19 139.3 16.8 211 45-263 22-285 (500)
75 3cf2_A TER ATPase, transitiona 99.6 3E-15 1E-19 149.0 14.1 173 41-232 200-407 (806)
76 2x8a_A Nuclear valosin-contain 99.6 7.8E-14 2.7E-18 123.4 19.0 212 41-266 6-267 (274)
77 1ny5_A Transcriptional regulat 99.6 2.3E-14 7.9E-19 133.1 15.7 212 44-259 136-383 (387)
78 1g41_A Heat shock protein HSLU 99.6 4.3E-14 1.5E-18 131.8 17.2 127 138-264 251-434 (444)
79 3n70_A Transport activator; si 99.6 6.6E-15 2.3E-19 117.7 9.2 132 46-196 2-144 (145)
80 3dzd_A Transcriptional regulat 99.6 1.5E-14 5.1E-19 133.4 12.1 203 45-252 129-367 (368)
81 3cf2_A TER ATPase, transitiona 99.5 5.4E-15 1.9E-19 147.2 8.5 180 41-239 473-694 (806)
82 3t15_A Ribulose bisphosphate c 99.5 1.5E-13 5.1E-18 122.9 16.6 149 68-233 38-221 (293)
83 3f9v_A Minichromosome maintena 99.5 1.3E-14 4.6E-19 141.6 8.1 209 45-260 295-584 (595)
84 2qen_A Walker-type ATPase; unk 99.5 2E-12 6.9E-17 118.2 20.2 177 43-241 10-248 (350)
85 3co5_A Putative two-component 99.5 8.7E-14 3E-18 110.8 7.7 128 46-196 5-142 (143)
86 1ypw_A Transitional endoplasmi 99.4 1.5E-12 5.1E-17 131.5 14.4 180 38-236 197-411 (806)
87 1ypw_A Transitional endoplasmi 99.4 6.9E-15 2.4E-19 148.5 -3.6 157 38-212 470-664 (806)
88 2fna_A Conserved hypothetical 99.4 2.4E-11 8.1E-16 111.3 17.0 189 43-243 11-254 (357)
89 3ec2_A DNA replication protein 99.3 2.5E-12 8.5E-17 106.4 7.1 131 36-178 1-144 (180)
90 3upu_A ATP-dependent DNA helic 99.2 3.9E-11 1.3E-15 114.0 9.1 147 24-176 3-164 (459)
91 1u0j_A DNA replication protein 99.1 2.7E-10 9.2E-15 98.8 9.5 137 53-218 89-259 (267)
92 2w58_A DNAI, primosome compone 99.1 1.7E-10 5.8E-15 97.1 7.1 124 35-177 15-159 (202)
93 3f8t_A Predicted ATPase involv 99.1 2.1E-09 7E-14 99.9 14.6 204 47-261 215-481 (506)
94 1tue_A Replication protein E1; 99.0 1.1E-09 3.7E-14 90.8 9.0 118 52-195 43-178 (212)
95 4akg_A Glutathione S-transfera 99.0 4E-09 1.4E-13 116.8 14.0 150 56-211 1259-1433(2695)
96 2kjq_A DNAA-related protein; s 98.9 1.1E-09 3.9E-14 87.3 6.9 99 67-189 37-140 (149)
97 2qgz_A Helicase loader, putati 98.9 6.1E-10 2.1E-14 100.0 4.6 131 36-177 115-258 (308)
98 1z6t_A APAF-1, apoptotic prote 98.8 1.4E-07 4.7E-12 92.4 17.3 189 40-242 119-331 (591)
99 4akg_A Glutathione S-transfera 98.7 1.1E-06 3.6E-11 97.9 22.2 168 53-244 634-838 (2695)
100 3sfz_A APAF-1, apoptotic pepti 98.6 2.4E-06 8.1E-11 90.6 21.2 190 40-242 119-331 (1249)
101 2a5y_B CED-4; apoptosis; HET: 98.6 6.7E-07 2.3E-11 86.8 15.5 181 48-238 131-336 (549)
102 3vkg_A Dynein heavy chain, cyt 98.6 5.5E-07 1.9E-11 100.8 16.6 184 56-245 1296-1526(3245)
103 1ye8_A Protein THEP1, hypothet 98.4 3.7E-06 1.3E-10 68.9 11.6 66 139-206 101-173 (178)
104 2r2a_A Uncharacterized protein 98.3 6.7E-07 2.3E-11 74.6 5.6 58 139-196 89-153 (199)
105 1vt4_I APAF-1 related killer D 98.3 2E-05 6.9E-10 80.2 16.3 43 47-89 130-173 (1221)
106 3vkg_A Dynein heavy chain, cyt 98.2 0.00012 4.1E-09 82.5 21.7 169 54-246 594-800 (3245)
107 2orw_A Thymidine kinase; TMTK, 98.1 4.5E-07 1.5E-11 74.8 0.4 36 137-175 76-111 (184)
108 2vhj_A Ntpase P4, P4; non- hyd 98.0 3.1E-05 1.1E-09 68.8 10.2 21 69-89 126-146 (331)
109 3e1s_A Exodeoxyribonuclease V, 97.9 3.3E-05 1.1E-09 74.9 10.2 119 50-177 191-316 (574)
110 2b8t_A Thymidine kinase; deoxy 97.8 3.8E-05 1.3E-09 65.0 7.6 24 69-92 15-38 (223)
111 1g5t_A COB(I)alamin adenosyltr 97.7 0.00029 1E-08 57.9 10.1 99 68-178 30-164 (196)
112 2fz4_A DNA repair protein RAD2 97.6 0.00039 1.3E-08 59.5 11.1 38 50-90 95-132 (237)
113 1jql_B DNA polymerase III, del 97.6 0.00025 8.6E-09 55.4 9.0 122 58-193 10-139 (140)
114 1w36_D RECD, exodeoxyribonucle 97.6 0.00036 1.2E-08 68.3 11.6 105 68-177 166-299 (608)
115 3cmu_A Protein RECA, recombina 97.5 0.00028 9.7E-09 76.6 10.6 37 57-93 1415-1454(2050)
116 2r8r_A Sensor protein; KDPD, P 97.5 0.00041 1.4E-08 58.4 9.0 27 69-95 9-35 (228)
117 2iut_A DNA translocase FTSK; n 97.5 0.0028 9.7E-08 60.7 15.7 70 137-206 343-420 (574)
118 1ly1_A Polynucleotide kinase; 97.5 0.00021 7.3E-09 58.0 7.0 21 69-89 5-25 (181)
119 2cvh_A DNA repair and recombin 97.5 0.0014 4.7E-08 54.9 11.8 32 57-88 9-42 (220)
120 3lw7_A Adenylate kinase relate 97.4 0.00056 1.9E-08 55.0 8.4 22 68-90 3-24 (179)
121 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.00031 1.1E-08 59.4 7.1 23 69-91 26-48 (235)
122 2j9r_A Thymidine kinase; TK1, 97.4 0.00025 8.7E-09 59.2 6.1 101 69-175 31-136 (214)
123 3dl0_A Adenylate kinase; phosp 97.4 0.004 1.4E-07 52.1 13.6 23 69-91 3-25 (216)
124 1xx6_A Thymidine kinase; NESG, 97.4 0.00049 1.7E-08 56.7 7.5 23 69-91 11-33 (191)
125 2zr9_A Protein RECA, recombina 97.3 0.00086 3E-08 60.8 9.6 36 56-91 48-86 (349)
126 1svm_A Large T antigen; AAA+ f 97.3 0.00078 2.7E-08 61.6 9.1 25 68-92 171-195 (377)
127 3hr8_A Protein RECA; alpha and 97.3 0.0014 4.8E-08 59.4 10.6 37 55-91 47-86 (356)
128 1u94_A RECA protein, recombina 97.3 0.001 3.5E-08 60.4 9.8 23 69-91 66-88 (356)
129 1xp8_A RECA protein, recombina 97.3 0.002 6.9E-08 58.7 11.3 36 56-91 61-99 (366)
130 3a4m_A L-seryl-tRNA(SEC) kinas 97.2 0.002 6.8E-08 55.8 10.6 24 68-91 6-29 (260)
131 1w4r_A Thymidine kinase; type 97.2 0.00045 1.5E-08 56.7 5.8 24 69-92 23-47 (195)
132 3tlx_A Adenylate kinase 2; str 97.2 0.0059 2E-07 52.2 13.2 23 68-90 31-53 (243)
133 3dm5_A SRP54, signal recogniti 97.2 0.0056 1.9E-07 57.0 13.4 27 69-95 103-129 (443)
134 3fb4_A Adenylate kinase; psych 97.2 0.0045 1.5E-07 51.7 11.7 23 69-91 3-25 (216)
135 3b6e_A Interferon-induced heli 97.1 0.00071 2.4E-08 56.5 6.4 39 49-90 34-72 (216)
136 3cmw_A Protein RECA, recombina 97.1 0.001 3.4E-08 71.5 8.6 24 69-92 1085-1108(1706)
137 2dr3_A UPF0273 protein PH0284; 97.1 0.0026 8.9E-08 54.2 9.9 22 69-90 26-47 (247)
138 3trf_A Shikimate kinase, SK; a 97.1 0.00049 1.7E-08 56.2 4.6 25 67-91 6-30 (185)
139 3zvl_A Bifunctional polynucleo 97.1 0.0006 2.1E-08 63.5 5.6 22 69-90 261-282 (416)
140 1nrj_B SR-beta, signal recogni 97.0 0.0027 9.2E-08 53.1 9.2 27 65-91 11-37 (218)
141 1s96_A Guanylate kinase, GMP k 97.0 0.0042 1.5E-07 52.3 10.2 23 69-91 19-41 (219)
142 1qhx_A CPT, protein (chloramph 97.0 0.00052 1.8E-08 55.6 4.4 24 68-91 5-28 (178)
143 1pzn_A RAD51, DNA repair and r 97.0 0.0056 1.9E-07 55.4 11.6 22 69-90 134-155 (349)
144 2ius_A DNA translocase FTSK; n 97.0 0.0045 1.5E-07 58.7 11.2 69 138-206 298-374 (512)
145 3io5_A Recombination and repai 97.0 0.0024 8.2E-08 56.5 8.7 50 56-105 13-67 (333)
146 2orv_A Thymidine kinase; TP4A 97.0 0.00076 2.6E-08 56.9 5.3 102 69-176 22-125 (234)
147 2ga8_A Hypothetical 39.9 kDa p 97.0 0.00069 2.3E-08 61.1 5.0 39 53-91 11-49 (359)
148 3kb2_A SPBC2 prophage-derived 96.9 0.00073 2.5E-08 54.3 4.5 24 68-91 3-26 (173)
149 1kht_A Adenylate kinase; phosp 96.9 0.0007 2.4E-08 55.4 4.3 25 68-92 5-29 (192)
150 3kl4_A SRP54, signal recogniti 96.9 0.006 2.1E-07 56.7 10.9 27 69-95 100-126 (433)
151 3jvv_A Twitching mobility prot 96.9 0.0088 3E-07 54.2 11.7 45 42-91 104-148 (356)
152 3llm_A ATP-dependent RNA helic 96.9 0.0076 2.6E-07 51.2 10.7 20 68-87 78-97 (235)
153 1t6n_A Probable ATP-dependent 96.9 0.0085 2.9E-07 50.1 10.8 23 68-90 53-75 (220)
154 3iij_A Coilin-interacting nucl 96.8 0.00099 3.4E-08 54.1 4.5 24 67-90 12-35 (180)
155 1zuh_A Shikimate kinase; alpha 96.8 0.00098 3.4E-08 53.5 4.4 25 67-91 8-32 (168)
156 3h1t_A Type I site-specific re 96.8 0.0017 5.8E-08 63.3 6.9 42 50-92 183-224 (590)
157 1via_A Shikimate kinase; struc 96.8 0.00085 2.9E-08 54.3 4.0 24 68-91 6-29 (175)
158 1ltq_A Polynucleotide kinase; 96.8 0.0067 2.3E-07 53.5 10.2 22 69-90 5-26 (301)
159 3vaa_A Shikimate kinase, SK; s 96.8 0.00087 3E-08 55.5 4.1 25 67-91 26-50 (199)
160 2iyv_A Shikimate kinase, SK; t 96.7 0.0011 3.7E-08 54.1 4.1 24 68-91 4-27 (184)
161 1nks_A Adenylate kinase; therm 96.7 0.001 3.5E-08 54.5 4.0 26 68-93 3-28 (194)
162 1gvn_B Zeta; postsegregational 96.7 0.0025 8.4E-08 56.1 6.7 22 69-90 36-57 (287)
163 2ze6_A Isopentenyl transferase 96.7 0.0012 4.2E-08 56.9 4.7 23 69-91 4-26 (253)
164 3pey_A ATP-dependent RNA helic 96.7 0.0098 3.4E-07 54.2 10.8 22 67-88 45-66 (395)
165 4b3f_X DNA-binding protein smu 96.7 0.0041 1.4E-07 61.3 8.6 41 50-92 191-231 (646)
166 1kag_A SKI, shikimate kinase I 96.7 0.001 3.5E-08 53.5 3.5 24 68-91 6-29 (173)
167 1y63_A LMAJ004144AAA protein; 96.7 0.0014 4.7E-08 53.6 4.3 23 67-89 11-33 (184)
168 2eyu_A Twitching motility prot 96.7 0.0054 1.9E-07 53.1 8.3 23 69-91 28-50 (261)
169 3cmu_A Protein RECA, recombina 96.7 0.0057 1.9E-07 66.7 9.9 25 69-93 1084-1108(2050)
170 3fmo_B ATP-dependent RNA helic 96.7 0.0069 2.3E-07 53.6 9.0 50 42-91 92-157 (300)
171 2rhm_A Putative kinase; P-loop 96.7 0.0012 4.2E-08 54.0 3.8 22 69-90 8-29 (193)
172 1n0w_A DNA repair protein RAD5 96.7 0.0039 1.3E-07 53.0 7.2 34 57-90 13-48 (243)
173 3cmw_A Protein RECA, recombina 96.6 0.0085 2.9E-07 64.5 10.9 36 56-91 719-757 (1706)
174 3vkw_A Replicase large subunit 96.6 0.0045 1.5E-07 57.5 7.8 96 69-176 164-269 (446)
175 3t61_A Gluconokinase; PSI-biol 96.6 0.0017 5.8E-08 53.8 4.5 24 68-91 20-43 (202)
176 1e6c_A Shikimate kinase; phosp 96.6 0.0015 5.1E-08 52.5 4.0 24 68-91 4-27 (173)
177 1vec_A ATP-dependent RNA helic 96.6 0.0085 2.9E-07 49.5 8.6 19 67-85 41-59 (206)
178 2cdn_A Adenylate kinase; phosp 96.5 0.0017 6E-08 53.7 4.1 24 68-91 22-45 (201)
179 3c8u_A Fructokinase; YP_612366 96.5 0.0028 9.5E-08 52.9 5.3 40 52-91 6-47 (208)
180 3cm0_A Adenylate kinase; ATP-b 96.5 0.0016 5.5E-08 53.0 3.7 22 69-90 7-28 (186)
181 2pt5_A Shikimate kinase, SK; a 96.5 0.002 6.8E-08 51.5 4.1 24 68-91 2-25 (168)
182 1qde_A EIF4A, translation init 96.5 0.0089 3E-07 50.1 8.4 23 68-90 53-76 (224)
183 1kgd_A CASK, peripheral plasma 96.5 0.0017 5.8E-08 52.8 3.7 22 69-90 8-29 (180)
184 1aky_A Adenylate kinase; ATP:A 96.5 0.0022 7.5E-08 53.9 4.3 25 67-91 5-29 (220)
185 1rz3_A Hypothetical protein rb 96.5 0.0038 1.3E-07 51.7 5.7 41 51-91 4-47 (201)
186 4eun_A Thermoresistant glucoki 96.5 0.0022 7.6E-08 53.1 4.2 23 68-90 31-53 (200)
187 2p5t_B PEZT; postsegregational 96.5 0.0027 9.1E-08 54.8 4.9 23 69-91 35-57 (253)
188 2c95_A Adenylate kinase 1; tra 96.5 0.0019 6.4E-08 53.0 3.7 25 67-91 10-34 (196)
189 3sr0_A Adenylate kinase; phosp 96.4 0.0019 6.5E-08 53.9 3.7 22 69-90 3-24 (206)
190 1rif_A DAR protein, DNA helica 96.4 0.021 7.1E-07 49.9 10.6 39 49-90 114-152 (282)
191 1tev_A UMP-CMP kinase; ploop, 96.4 0.002 6.7E-08 52.8 3.7 23 69-91 6-28 (196)
192 3rlf_A Maltose/maltodextrin im 96.4 0.011 3.8E-07 53.9 8.8 23 69-91 32-54 (381)
193 2gxq_A Heat resistant RNA depe 96.4 0.015 5.1E-07 48.0 9.0 23 68-90 40-63 (207)
194 1v43_A Sugar-binding transport 96.4 0.018 6.3E-07 52.4 10.2 42 137-178 159-203 (372)
195 2plr_A DTMP kinase, probable t 96.4 0.0021 7.3E-08 53.4 3.7 24 69-92 7-30 (213)
196 3tui_C Methionine import ATP-b 96.4 0.02 6.8E-07 51.9 10.2 42 137-178 181-225 (366)
197 3eiq_A Eukaryotic initiation f 96.4 0.01 3.5E-07 54.6 8.6 39 137-175 183-222 (414)
198 1zak_A Adenylate kinase; ATP:A 96.4 0.0025 8.4E-08 53.7 4.0 25 67-91 6-30 (222)
199 3uie_A Adenylyl-sulfate kinase 96.3 0.0023 7.9E-08 53.0 3.7 24 68-91 27-50 (200)
200 3be4_A Adenylate kinase; malar 96.3 0.0024 8.3E-08 53.6 3.8 24 68-91 7-30 (217)
201 1vma_A Cell division protein F 96.3 0.016 5.3E-07 51.4 9.2 24 69-92 107-130 (306)
202 2bwj_A Adenylate kinase 5; pho 96.3 0.0021 7.3E-08 52.8 3.4 24 68-91 14-37 (199)
203 2qor_A Guanylate kinase; phosp 96.3 0.0021 7.1E-08 53.4 3.3 22 69-90 15-36 (204)
204 3umf_A Adenylate kinase; rossm 96.3 0.0025 8.4E-08 53.6 3.7 22 69-90 32-53 (217)
205 2wwf_A Thymidilate kinase, put 96.3 0.004 1.4E-07 51.8 5.1 26 68-93 12-37 (212)
206 1v5w_A DMC1, meiotic recombina 96.3 0.01 3.5E-07 53.6 8.1 50 57-106 111-166 (343)
207 2yvu_A Probable adenylyl-sulfa 96.3 0.0023 7.8E-08 52.2 3.4 24 69-92 16-39 (186)
208 1knq_A Gluconate kinase; ALFA/ 96.3 0.0026 8.8E-08 51.3 3.7 22 69-90 11-32 (175)
209 2jaq_A Deoxyguanosine kinase; 96.3 0.0025 8.7E-08 52.6 3.7 24 68-91 2-25 (205)
210 1ukz_A Uridylate kinase; trans 96.3 0.0027 9.3E-08 52.5 3.7 23 68-90 17-39 (203)
211 1qf9_A UMP/CMP kinase, protein 96.3 0.0025 8.4E-08 52.1 3.4 24 68-91 8-31 (194)
212 3e2i_A Thymidine kinase; Zn-bi 96.3 0.0014 4.8E-08 54.6 1.9 25 137-161 101-125 (219)
213 3bh0_A DNAB-like replicative h 96.3 0.012 4E-07 52.5 8.1 48 55-105 56-105 (315)
214 2wsm_A Hydrogenase expression/ 96.3 0.0043 1.5E-07 52.0 4.9 46 47-92 11-56 (221)
215 1ak2_A Adenylate kinase isoenz 96.3 0.0035 1.2E-07 53.2 4.4 24 68-91 18-41 (233)
216 2vli_A Antibiotic resistance p 96.3 0.0016 5.4E-08 52.9 2.1 24 68-91 7-30 (183)
217 1zd8_A GTP:AMP phosphotransfer 96.2 0.0023 7.8E-08 54.1 3.1 24 68-91 9-32 (227)
218 1zp6_A Hypothetical protein AT 96.2 0.0022 7.6E-08 52.4 2.9 22 69-90 12-33 (191)
219 1ex7_A Guanylate kinase; subst 96.2 0.003 1E-07 51.7 3.5 23 68-90 3-25 (186)
220 4a74_A DNA repair and recombin 96.2 0.0098 3.3E-07 50.0 7.0 23 69-91 28-50 (231)
221 1hv8_A Putative ATP-dependent 96.2 0.013 4.4E-07 52.9 8.2 34 55-90 35-68 (367)
222 3crm_A TRNA delta(2)-isopenten 96.2 0.0034 1.2E-07 55.9 4.2 24 68-91 7-30 (323)
223 2hf9_A Probable hydrogenase ni 96.2 0.0072 2.5E-07 50.7 6.0 44 50-93 22-65 (226)
224 2r6a_A DNAB helicase, replicat 96.2 0.04 1.4E-06 51.7 11.5 23 69-91 206-228 (454)
225 2z0h_A DTMP kinase, thymidylat 96.1 0.0034 1.2E-07 51.5 3.7 23 69-91 3-25 (197)
226 3fht_A ATP-dependent RNA helic 96.1 0.037 1.3E-06 50.7 11.1 24 67-90 65-89 (412)
227 2pbr_A DTMP kinase, thymidylat 96.1 0.0035 1.2E-07 51.3 3.7 23 69-91 3-25 (195)
228 1odf_A YGR205W, hypothetical 3 96.1 0.0079 2.7E-07 52.9 6.1 23 69-91 34-56 (290)
229 1e4v_A Adenylate kinase; trans 96.1 0.0032 1.1E-07 52.7 3.4 24 68-91 2-25 (214)
230 2bbw_A Adenylate kinase 4, AK4 96.1 0.0035 1.2E-07 53.7 3.7 24 68-91 29-52 (246)
231 2xb4_A Adenylate kinase; ATP-b 96.1 0.0036 1.2E-07 52.8 3.6 23 69-91 3-25 (223)
232 1kao_A RAP2A; GTP-binding prot 96.1 0.064 2.2E-06 41.9 10.8 22 69-90 6-27 (167)
233 2pt7_A CAG-ALFA; ATPase, prote 96.1 0.027 9.1E-07 50.5 9.3 37 53-91 160-196 (330)
234 1nn5_A Similar to deoxythymidy 96.0 0.0036 1.2E-07 52.1 3.4 26 68-93 11-36 (215)
235 2v3c_C SRP54, signal recogniti 96.0 0.012 4.2E-07 54.8 7.2 24 68-91 101-124 (432)
236 3tau_A Guanylate kinase, GMP k 96.0 0.0038 1.3E-07 52.1 3.3 23 69-91 11-33 (208)
237 2q6t_A DNAB replication FORK h 96.0 0.024 8.2E-07 53.1 9.2 36 55-91 188-225 (444)
238 2bdt_A BH3686; alpha-beta prot 96.0 0.0039 1.3E-07 50.9 3.4 22 69-90 5-26 (189)
239 1cke_A CK, MSSA, protein (cyti 96.0 0.0042 1.4E-07 52.3 3.7 23 68-90 7-29 (227)
240 2j37_W Signal recognition part 96.0 0.08 2.7E-06 50.2 12.6 24 69-92 104-127 (504)
241 3lda_A DNA repair protein RAD5 96.0 0.012 4.3E-07 54.1 6.9 38 69-106 181-222 (400)
242 1z0j_A RAB-22, RAS-related pro 96.0 0.0091 3.1E-07 47.2 5.3 22 69-90 9-30 (170)
243 3dz8_A RAS-related protein RAB 96.0 0.016 5.5E-07 47.1 6.9 24 68-91 25-48 (191)
244 3tr0_A Guanylate kinase, GMP k 95.9 0.0042 1.4E-07 51.3 3.3 22 69-90 10-31 (205)
245 2z43_A DNA repair and recombin 95.9 0.013 4.4E-07 52.4 6.8 38 69-106 110-151 (324)
246 1p9r_A General secretion pathw 95.9 0.015 5E-07 54.0 7.2 50 42-92 144-193 (418)
247 3nwj_A ATSK2; P loop, shikimat 95.9 0.0071 2.4E-07 52.0 4.8 38 52-91 33-73 (250)
248 2pez_A Bifunctional 3'-phospho 95.9 0.0055 1.9E-07 49.6 3.8 22 69-90 8-29 (179)
249 3ly5_A ATP-dependent RNA helic 95.9 0.012 4E-07 50.9 6.2 18 68-85 93-110 (262)
250 3fmp_B ATP-dependent RNA helic 95.9 0.053 1.8E-06 51.1 11.2 25 66-90 131-156 (479)
251 2v54_A DTMP kinase, thymidylat 95.9 0.0038 1.3E-07 51.6 2.8 23 68-90 6-28 (204)
252 1xti_A Probable ATP-dependent 95.9 0.065 2.2E-06 48.7 11.5 23 67-89 46-68 (391)
253 3a00_A Guanylate kinase, GMP k 95.9 0.0047 1.6E-07 50.4 3.3 23 69-91 4-26 (186)
254 2j41_A Guanylate kinase; GMP, 95.9 0.0048 1.6E-07 51.0 3.4 23 68-90 8-30 (207)
255 4e22_A Cytidylate kinase; P-lo 95.9 0.083 2.8E-06 45.2 11.3 24 68-91 29-52 (252)
256 3t1o_A Gliding protein MGLA; G 95.9 0.011 3.9E-07 48.0 5.6 22 69-90 17-38 (198)
257 1xjc_A MOBB protein homolog; s 95.9 0.0082 2.8E-07 48.2 4.5 36 66-101 4-39 (169)
258 3ney_A 55 kDa erythrocyte memb 95.8 0.0051 1.7E-07 50.8 3.3 22 69-90 22-43 (197)
259 3bor_A Human initiation factor 95.8 0.018 6.2E-07 48.8 7.0 18 68-85 69-86 (237)
260 3clv_A RAB5 protein, putative; 95.8 0.011 3.8E-07 48.3 5.5 23 68-90 9-31 (208)
261 3iuy_A Probable ATP-dependent 95.8 0.026 8.8E-07 47.4 7.8 18 68-85 59-76 (228)
262 1lvg_A Guanylate kinase, GMP k 95.8 0.0059 2E-07 50.5 3.7 23 68-90 6-28 (198)
263 1zj6_A ADP-ribosylation factor 95.8 0.026 9E-07 45.6 7.6 25 65-89 15-39 (187)
264 3foz_A TRNA delta(2)-isopenten 95.8 0.0084 2.9E-07 52.9 4.8 23 69-91 13-35 (316)
265 2j0s_A ATP-dependent RNA helic 95.8 0.1 3.5E-06 47.8 12.5 21 68-88 76-96 (410)
266 1wp9_A ATP-dependent RNA helic 95.8 0.045 1.5E-06 51.1 10.2 37 50-90 11-47 (494)
267 3ber_A Probable ATP-dependent 95.8 0.027 9.2E-07 48.2 7.8 18 67-84 81-98 (249)
268 1wms_A RAB-9, RAB9, RAS-relate 95.8 0.028 9.5E-07 44.8 7.5 22 69-90 10-31 (177)
269 3bc1_A RAS-related protein RAB 95.7 0.015 5.1E-07 47.1 5.9 22 69-90 14-35 (195)
270 2xau_A PRE-mRNA-splicing facto 95.7 0.029 9.8E-07 56.4 8.9 22 68-89 111-132 (773)
271 1u8z_A RAS-related protein RAL 95.7 0.023 7.8E-07 44.6 6.8 23 68-90 6-28 (168)
272 1z2a_A RAS-related protein RAB 95.7 0.0083 2.9E-07 47.4 4.2 23 68-90 7-29 (168)
273 1sky_E F1-ATPase, F1-ATP synth 95.7 0.02 7E-07 53.5 7.2 36 53-91 141-176 (473)
274 2i1q_A DNA repair and recombin 95.7 0.019 6.6E-07 51.2 6.9 35 56-90 86-122 (322)
275 3fho_A ATP-dependent RNA helic 95.7 0.026 9E-07 53.8 8.3 24 67-90 159-183 (508)
276 1z0f_A RAB14, member RAS oncog 95.7 0.019 6.6E-07 45.7 6.3 23 68-90 17-39 (179)
277 3r20_A Cytidylate kinase; stru 95.7 0.0068 2.3E-07 51.4 3.7 24 68-91 11-34 (233)
278 2grj_A Dephospho-COA kinase; T 95.7 0.0081 2.8E-07 49.4 4.0 22 69-90 15-36 (192)
279 1m7g_A Adenylylsulfate kinase; 95.7 0.0069 2.4E-07 50.5 3.7 24 68-91 27-50 (211)
280 3a8t_A Adenylate isopentenyltr 95.7 0.0053 1.8E-07 54.9 3.1 25 68-92 42-66 (339)
281 1s2m_A Putative ATP-dependent 95.7 0.088 3E-06 48.1 11.4 22 68-89 60-81 (400)
282 4f4c_A Multidrug resistance pr 95.7 0.018 6.1E-07 61.4 7.5 60 137-196 1235-1299(1321)
283 2hup_A RAS-related protein RAB 95.7 0.045 1.5E-06 44.9 8.5 23 68-90 31-53 (201)
284 3dkp_A Probable ATP-dependent 95.6 0.073 2.5E-06 45.1 10.0 23 68-90 68-91 (245)
285 4dkx_A RAS-related protein RAB 95.6 0.015 5.2E-07 48.7 5.6 22 69-90 16-37 (216)
286 1uj2_A Uridine-cytidine kinase 95.6 0.0074 2.5E-07 51.9 3.6 23 69-91 25-47 (252)
287 4gzl_A RAS-related C3 botulinu 95.6 0.0035 1.2E-07 51.9 1.5 40 51-90 15-54 (204)
288 2if2_A Dephospho-COA kinase; a 95.6 0.0064 2.2E-07 50.3 3.1 22 68-90 3-24 (204)
289 3d3q_A TRNA delta(2)-isopenten 95.6 0.0093 3.2E-07 53.5 4.2 24 68-91 9-32 (340)
290 3ake_A Cytidylate kinase; CMP 95.6 0.0083 2.8E-07 49.6 3.7 24 68-91 4-27 (208)
291 1q0u_A Bstdead; DEAD protein, 95.6 0.035 1.2E-06 46.3 7.6 19 68-86 43-61 (219)
292 1bif_A 6-phosphofructo-2-kinas 95.5 0.051 1.7E-06 51.2 9.4 24 69-92 42-65 (469)
293 1ls1_A Signal recognition part 95.5 0.088 3E-06 46.3 10.4 24 69-92 101-124 (295)
294 2fwr_A DNA repair protein RAD2 95.5 0.04 1.4E-06 51.8 8.7 39 49-90 94-132 (472)
295 1np6_A Molybdopterin-guanine d 95.5 0.012 4.2E-07 47.5 4.4 37 67-103 7-43 (174)
296 2oca_A DAR protein, ATP-depend 95.5 0.074 2.5E-06 50.5 10.6 38 50-90 115-152 (510)
297 3exa_A TRNA delta(2)-isopenten 95.5 0.0084 2.9E-07 53.0 3.5 23 69-91 6-28 (322)
298 1r2q_A RAS-related protein RAB 95.5 0.023 7.7E-07 44.8 5.9 21 69-89 9-29 (170)
299 3p32_A Probable GTPase RV1496/ 95.5 0.024 8.1E-07 51.4 6.7 37 67-103 80-116 (355)
300 4a1f_A DNAB helicase, replicat 95.5 0.063 2.2E-06 48.1 9.3 23 69-91 49-71 (338)
301 1gtv_A TMK, thymidylate kinase 95.5 0.0038 1.3E-07 52.0 1.2 23 69-91 3-25 (214)
302 1jjv_A Dephospho-COA kinase; P 95.5 0.007 2.4E-07 50.1 2.8 20 69-88 5-24 (206)
303 1r8s_A ADP-ribosylation factor 95.5 0.059 2E-06 42.2 8.3 23 68-90 2-24 (164)
304 3tqc_A Pantothenate kinase; bi 95.5 0.017 5.8E-07 51.5 5.4 23 69-91 95-117 (321)
305 2gk6_A Regulator of nonsense t 95.4 0.033 1.1E-06 54.6 7.9 40 50-92 182-221 (624)
306 3asz_A Uridine kinase; cytidin 95.4 0.009 3.1E-07 49.6 3.4 23 69-91 9-31 (211)
307 4gp7_A Metallophosphoesterase; 95.4 0.0077 2.6E-07 48.4 2.8 17 69-85 12-28 (171)
308 2ce2_X GTPase HRAS; signaling 95.4 0.019 6.5E-07 45.0 5.1 23 68-90 5-27 (166)
309 2bov_A RAla, RAS-related prote 95.4 0.032 1.1E-06 45.7 6.7 23 68-90 16-38 (206)
310 3con_A GTPase NRAS; structural 95.4 0.02 6.8E-07 46.4 5.3 22 69-90 24-45 (190)
311 1htw_A HI0065; nucleotide-bind 95.4 0.011 3.6E-07 47.0 3.5 22 69-90 36-57 (158)
312 4eaq_A DTMP kinase, thymidylat 95.4 0.01 3.5E-07 50.2 3.6 24 69-92 29-52 (229)
313 1z6g_A Guanylate kinase; struc 95.4 0.0095 3.3E-07 50.0 3.4 22 69-90 26-47 (218)
314 2a9k_A RAS-related protein RAL 95.4 0.03 1E-06 45.0 6.3 22 69-90 21-42 (187)
315 1tq4_A IIGP1, interferon-induc 95.4 0.0095 3.2E-07 55.1 3.6 23 68-90 71-93 (413)
316 2f7s_A C25KG, RAS-related prot 95.3 0.032 1.1E-06 46.3 6.6 22 68-89 27-48 (217)
317 1ek0_A Protein (GTP-binding pr 95.3 0.023 8E-07 44.7 5.5 22 69-90 6-27 (170)
318 2xxa_A Signal recognition part 95.3 0.24 8.2E-06 46.0 13.0 25 69-93 103-127 (433)
319 2qmh_A HPR kinase/phosphorylas 95.3 0.0081 2.8E-07 49.4 2.6 23 69-91 37-59 (205)
320 1znw_A Guanylate kinase, GMP k 95.3 0.011 3.6E-07 49.2 3.4 22 69-90 23-44 (207)
321 1zd9_A ADP-ribosylation factor 95.3 0.068 2.3E-06 43.2 8.3 22 69-90 25-46 (188)
322 2eyq_A TRCF, transcription-rep 95.3 0.089 3E-06 55.2 11.0 39 49-87 607-645 (1151)
323 3b85_A Phosphate starvation-in 95.3 0.011 3.9E-07 49.2 3.5 42 38-89 4-45 (208)
324 3llu_A RAS-related GTP-binding 95.3 0.13 4.5E-06 41.8 10.0 22 68-89 22-43 (196)
325 1z06_A RAS-related protein RAB 95.2 0.034 1.2E-06 45.0 6.2 23 68-90 22-44 (189)
326 3b5x_A Lipid A export ATP-bind 95.2 0.066 2.3E-06 51.9 9.2 42 137-178 498-540 (582)
327 3bgw_A DNAB-like replicative h 95.2 0.11 3.9E-06 48.4 10.5 47 55-104 185-233 (444)
328 2i3b_A HCR-ntpase, human cance 95.2 0.013 4.6E-07 47.9 3.7 69 137-207 105-182 (189)
329 2ehv_A Hypothetical protein PH 95.2 0.011 3.6E-07 50.4 3.2 20 69-88 33-52 (251)
330 2oxc_A Probable ATP-dependent 95.2 0.055 1.9E-06 45.5 7.6 23 68-90 63-86 (230)
331 2pl3_A Probable ATP-dependent 95.2 0.058 2E-06 45.5 7.7 18 68-85 64-81 (236)
332 1c1y_A RAS-related protein RAP 95.1 0.025 8.5E-07 44.5 5.1 22 69-90 6-27 (167)
333 1uf9_A TT1252 protein; P-loop, 95.1 0.011 3.8E-07 48.6 3.1 21 69-89 11-31 (203)
334 1m7b_A RND3/RHOE small GTP-bin 95.1 0.0088 3E-07 48.4 2.3 22 69-90 10-31 (184)
335 4dsu_A GTPase KRAS, isoform 2B 95.1 0.037 1.3E-06 44.5 6.2 22 69-90 7-28 (189)
336 2qt1_A Nicotinamide riboside k 95.1 0.0095 3.3E-07 49.4 2.6 22 69-90 24-45 (207)
337 2il1_A RAB12; G-protein, GDP, 95.1 0.028 9.6E-07 45.7 5.4 21 69-89 29-49 (192)
338 4edh_A DTMP kinase, thymidylat 95.1 0.042 1.4E-06 45.9 6.4 26 69-94 9-34 (213)
339 1fuu_A Yeast initiation factor 95.1 0.046 1.6E-06 49.7 7.4 23 68-90 60-83 (394)
340 2p5s_A RAS and EF-hand domain 95.1 0.03 1E-06 45.8 5.5 23 68-90 30-52 (199)
341 1q57_A DNA primase/helicase; d 95.1 0.15 5.1E-06 48.5 11.1 24 69-92 245-268 (503)
342 1zbd_A Rabphilin-3A; G protein 95.0 0.029 1E-06 46.0 5.4 22 69-90 11-32 (203)
343 2fh5_B SR-beta, signal recogni 95.0 0.072 2.5E-06 44.0 7.9 24 67-90 8-31 (214)
344 3q3j_B RHO-related GTP-binding 95.0 0.012 4.1E-07 49.1 3.0 22 69-90 30-51 (214)
345 3fe2_A Probable ATP-dependent 95.0 0.086 2.9E-06 44.7 8.5 18 68-85 68-85 (242)
346 2zts_A Putative uncharacterize 95.0 0.0082 2.8E-07 51.1 1.9 21 69-89 33-53 (251)
347 2j1l_A RHO-related GTP-binding 95.0 0.023 7.8E-07 47.2 4.6 21 69-89 37-57 (214)
348 1gm5_A RECG; helicase, replica 95.0 0.08 2.8E-06 53.0 9.2 40 49-88 372-411 (780)
349 3lv8_A DTMP kinase, thymidylat 95.0 0.032 1.1E-06 47.3 5.5 25 69-93 30-54 (236)
350 3q72_A GTP-binding protein RAD 95.0 0.026 9E-07 44.4 4.7 21 68-88 4-24 (166)
351 2ged_A SR-beta, signal recogni 95.0 0.034 1.2E-06 45.1 5.5 23 68-90 50-72 (193)
352 2h92_A Cytidylate kinase; ross 94.9 0.018 6.1E-07 48.1 3.9 23 68-90 5-27 (219)
353 3e70_C DPA, signal recognition 94.9 0.064 2.2E-06 47.9 7.6 24 69-92 132-155 (328)
354 3qf4_A ABC transporter, ATP-bi 94.9 0.049 1.7E-06 52.9 7.4 43 137-179 497-540 (587)
355 1vht_A Dephospho-COA kinase; s 94.9 0.015 5.2E-07 48.5 3.3 20 69-88 7-26 (218)
356 3kkq_A RAS-related protein M-R 94.9 0.03 1E-06 45.0 5.0 22 69-90 21-42 (183)
357 2g6b_A RAS-related protein RAB 94.9 0.022 7.6E-07 45.5 4.2 22 69-90 13-34 (180)
358 1g8f_A Sulfate adenylyltransfe 94.9 0.026 8.8E-07 53.6 5.2 44 49-92 376-421 (511)
359 2wjy_A Regulator of nonsense t 94.9 0.057 1.9E-06 54.3 7.9 40 50-92 358-397 (800)
360 1a7j_A Phosphoribulokinase; tr 94.9 0.0067 2.3E-07 53.4 1.1 23 69-91 8-30 (290)
361 2v9p_A Replication protein E1; 94.9 0.027 9.4E-07 49.7 5.0 22 69-90 129-150 (305)
362 4f92_B U5 small nuclear ribonu 94.9 0.091 3.1E-06 57.3 9.9 41 42-86 922-962 (1724)
363 2efe_B Small GTP-binding prote 94.9 0.041 1.4E-06 43.9 5.8 21 69-89 15-35 (181)
364 2fg5_A RAB-22B, RAS-related pr 94.9 0.036 1.2E-06 45.0 5.4 22 69-90 26-47 (192)
365 3pqc_A Probable GTP-binding pr 94.8 0.094 3.2E-06 42.3 7.9 23 67-89 24-46 (195)
366 4tmk_A Protein (thymidylate ki 94.8 0.04 1.4E-06 46.0 5.7 26 68-93 5-30 (213)
367 2jeo_A Uridine-cytidine kinase 94.8 0.019 6.4E-07 49.1 3.7 23 69-91 28-50 (245)
368 3tkl_A RAS-related protein RAB 94.8 0.029 9.9E-07 45.6 4.7 22 69-90 19-40 (196)
369 3lnc_A Guanylate kinase, GMP k 94.8 0.011 3.6E-07 50.1 1.9 22 69-90 30-52 (231)
370 1sq5_A Pantothenate kinase; P- 94.8 0.048 1.6E-06 48.3 6.3 23 69-91 83-105 (308)
371 1fzq_A ADP-ribosylation factor 94.7 0.037 1.3E-06 44.5 5.1 22 68-89 18-39 (181)
372 2ew1_A RAS-related protein RAB 94.7 0.026 8.8E-07 46.5 4.2 23 68-90 28-50 (201)
373 2f6r_A COA synthase, bifunctio 94.7 0.019 6.5E-07 50.2 3.5 21 69-90 78-98 (281)
374 1nlf_A Regulatory protein REPA 94.7 0.018 6.2E-07 50.2 3.4 23 69-91 33-55 (279)
375 2oap_1 GSPE-2, type II secreti 94.7 0.022 7.4E-07 54.3 4.1 40 50-91 246-285 (511)
376 3eph_A TRNA isopentenyltransfe 94.7 0.022 7.7E-07 52.1 4.0 23 69-91 5-27 (409)
377 3th5_A RAS-related C3 botulinu 93.7 0.0056 1.9E-07 50.5 0.0 32 58-89 22-53 (204)
378 4a82_A Cystic fibrosis transme 94.7 0.033 1.1E-06 54.0 5.4 43 137-179 495-538 (578)
379 3ld9_A DTMP kinase, thymidylat 94.7 0.043 1.5E-06 46.1 5.5 25 68-92 23-47 (223)
380 2dyk_A GTP-binding protein; GT 94.6 0.02 7E-07 44.7 3.3 23 67-89 2-24 (161)
381 1q3t_A Cytidylate kinase; nucl 94.6 0.023 7.7E-07 48.2 3.7 24 68-91 18-41 (236)
382 2f1r_A Molybdopterin-guanine d 94.6 0.012 4.1E-07 47.4 1.8 38 68-105 4-41 (171)
383 2v6i_A RNA helicase; membrane, 94.6 0.071 2.4E-06 49.6 7.3 21 67-87 3-24 (431)
384 3aez_A Pantothenate kinase; tr 94.6 0.022 7.6E-07 50.6 3.6 23 69-91 93-115 (312)
385 1rj9_A FTSY, signal recognitio 94.6 0.061 2.1E-06 47.5 6.5 24 69-92 105-128 (304)
386 2z0m_A 337AA long hypothetical 94.5 0.19 6.4E-06 44.4 9.8 22 68-89 33-54 (337)
387 3kta_A Chromosome segregation 94.5 0.022 7.7E-07 45.9 3.4 24 69-92 29-52 (182)
388 3lxx_A GTPase IMAP family memb 94.5 0.084 2.9E-06 44.6 7.1 23 68-90 31-53 (239)
389 2zpa_A Uncharacterized protein 94.5 0.14 4.7E-06 50.0 9.3 97 52-159 179-277 (671)
390 2xgj_A ATP-dependent RNA helic 94.5 0.21 7.2E-06 51.6 11.1 53 33-88 69-123 (1010)
391 4dhe_A Probable GTP-binding pr 94.5 0.29 9.8E-06 40.5 10.3 24 66-89 29-52 (223)
392 1cr0_A DNA primase/helicase; R 94.5 0.022 7.5E-07 50.1 3.4 23 69-91 38-60 (296)
393 2va8_A SSO2462, SKI2-type heli 94.5 0.037 1.3E-06 55.1 5.4 20 67-86 47-66 (715)
394 3tqf_A HPR(Ser) kinase; transf 94.5 0.023 7.8E-07 45.5 3.0 22 68-89 18-39 (181)
395 2z83_A Helicase/nucleoside tri 94.5 0.11 3.7E-06 48.8 8.3 23 68-90 23-46 (459)
396 2gf0_A GTP-binding protein DI- 94.4 0.052 1.8E-06 44.1 5.4 22 68-89 10-31 (199)
397 2www_A Methylmalonic aciduria 94.4 0.061 2.1E-06 48.6 6.2 24 68-91 76-99 (349)
398 3v9p_A DTMP kinase, thymidylat 94.4 0.02 6.9E-07 48.3 2.8 24 69-92 28-51 (227)
399 2ewv_A Twitching motility prot 94.4 0.025 8.6E-07 51.6 3.6 23 69-91 139-161 (372)
400 2axn_A 6-phosphofructo-2-kinas 94.4 0.023 8E-07 54.2 3.5 23 69-91 38-60 (520)
401 1ewq_A DNA mismatch repair pro 94.4 0.2 6.8E-06 50.0 10.3 23 68-90 578-600 (765)
402 2f9l_A RAB11B, member RAS onco 94.3 0.027 9.1E-07 46.2 3.4 22 69-90 8-29 (199)
403 2gza_A Type IV secretion syste 94.3 0.021 7.2E-07 51.9 2.9 35 55-91 166-200 (361)
404 3gj0_A GTP-binding nuclear pro 94.3 0.015 5.2E-07 48.5 1.9 21 69-89 18-38 (221)
405 3qf4_B Uncharacterized ABC tra 94.3 0.1 3.4E-06 50.8 7.9 43 137-179 509-552 (598)
406 1oix_A RAS-related protein RAB 94.3 0.025 8.6E-07 46.1 3.1 23 69-91 32-54 (191)
407 3tif_A Uncharacterized ABC tra 94.2 0.022 7.5E-07 48.4 2.7 42 137-178 163-207 (235)
408 2gks_A Bifunctional SAT/APS ki 94.2 0.041 1.4E-06 52.8 4.9 43 50-92 354-398 (546)
409 3l9o_A ATP-dependent RNA helic 94.2 0.28 9.6E-06 51.2 11.4 22 68-89 201-222 (1108)
410 2ffh_A Protein (FFH); SRP54, s 94.1 0.46 1.6E-05 43.9 11.6 25 69-93 101-125 (425)
411 2onk_A Molybdate/tungstate ABC 94.1 0.028 9.6E-07 47.9 3.2 42 137-178 144-188 (240)
412 2ocp_A DGK, deoxyguanosine kin 94.1 0.026 9E-07 48.0 3.0 23 69-91 5-27 (241)
413 3b9q_A Chloroplast SRP recepto 94.1 0.032 1.1E-06 49.3 3.6 23 69-91 103-125 (302)
414 1z63_A Helicase of the SNF2/RA 94.1 0.16 5.4E-06 48.0 8.7 40 50-91 42-81 (500)
415 3gmt_A Adenylate kinase; ssgci 94.1 0.036 1.2E-06 46.8 3.7 23 69-91 11-33 (230)
416 3fdi_A Uncharacterized protein 94.1 0.033 1.1E-06 46.0 3.4 28 68-95 8-35 (201)
417 2yc2_C IFT27, small RAB-relate 94.0 0.022 7.6E-07 46.7 2.3 22 68-89 22-43 (208)
418 3i5x_A ATP-dependent RNA helic 94.0 0.29 1E-05 47.0 10.6 18 67-84 112-129 (563)
419 2pcj_A ABC transporter, lipopr 94.0 0.023 7.7E-07 47.9 2.4 22 69-90 33-54 (224)
420 3lxw_A GTPase IMAP family memb 94.0 0.18 6.2E-06 42.9 8.2 22 68-89 23-44 (247)
421 4f4c_A Multidrug resistance pr 94.0 0.063 2.1E-06 57.2 6.2 24 68-91 446-469 (1321)
422 1yrb_A ATP(GTP)binding protein 94.0 0.068 2.3E-06 45.8 5.4 35 69-104 17-51 (262)
423 2cbz_A Multidrug resistance-as 94.0 0.026 9E-07 48.0 2.7 43 137-179 145-191 (237)
424 1f2t_A RAD50 ABC-ATPase; DNA d 94.0 0.038 1.3E-06 43.3 3.4 24 69-92 26-49 (149)
425 1sgw_A Putative ABC transporte 94.0 0.027 9.1E-07 47.1 2.7 22 69-90 38-59 (214)
426 2xzl_A ATP-dependent helicase 93.9 0.062 2.1E-06 54.1 5.8 38 50-90 362-399 (802)
427 3thx_A DNA mismatch repair pro 93.9 0.39 1.3E-05 49.0 11.6 20 69-88 665-684 (934)
428 2zej_A Dardarin, leucine-rich 93.9 0.028 9.6E-07 45.4 2.7 21 68-88 4-24 (184)
429 1c9k_A COBU, adenosylcobinamid 93.9 0.031 1.1E-06 45.2 2.9 21 69-89 2-22 (180)
430 3tmk_A Thymidylate kinase; pho 93.9 0.035 1.2E-06 46.4 3.3 25 68-92 7-31 (216)
431 2wji_A Ferrous iron transport 93.9 0.036 1.2E-06 43.8 3.2 22 68-89 5-26 (165)
432 2px0_A Flagellar biosynthesis 93.8 0.036 1.2E-06 48.8 3.4 23 69-91 108-130 (296)
433 3sop_A Neuronal-specific septi 93.8 0.037 1.3E-06 48.1 3.3 23 69-91 5-27 (270)
434 1b0u_A Histidine permease; ABC 93.7 0.03 1E-06 48.4 2.7 22 69-90 35-56 (262)
435 2nzj_A GTP-binding protein REM 93.7 0.039 1.3E-06 43.7 3.2 22 68-89 6-27 (175)
436 2d2e_A SUFC protein; ABC-ATPas 93.7 0.038 1.3E-06 47.4 3.2 42 137-178 161-204 (250)
437 3thx_B DNA mismatch repair pro 93.7 0.43 1.5E-05 48.6 11.3 21 69-89 676-696 (918)
438 1m8p_A Sulfate adenylyltransfe 93.7 0.052 1.8E-06 52.4 4.5 23 69-91 399-421 (573)
439 2lkc_A Translation initiation 93.7 0.056 1.9E-06 43.0 4.0 23 67-89 9-31 (178)
440 3gfo_A Cobalt import ATP-bindi 93.7 0.032 1.1E-06 48.6 2.7 44 137-180 161-207 (275)
441 3fvq_A Fe(3+) IONS import ATP- 93.7 0.034 1.2E-06 50.3 2.9 22 69-90 33-54 (359)
442 1z08_A RAS-related protein RAB 93.6 0.044 1.5E-06 43.2 3.3 22 69-90 9-30 (170)
443 2zu0_C Probable ATP-dependent 93.6 0.039 1.3E-06 47.8 3.2 42 137-178 182-225 (267)
444 2p6r_A Afuhel308 helicase; pro 93.6 0.087 3E-06 52.3 6.1 19 67-85 41-59 (702)
445 1g6h_A High-affinity branched- 93.6 0.033 1.1E-06 48.0 2.7 43 137-179 171-215 (257)
446 2ff7_A Alpha-hemolysin translo 93.6 0.034 1.1E-06 47.6 2.7 42 137-178 163-205 (247)
447 1mv5_A LMRA, multidrug resista 93.6 0.034 1.1E-06 47.5 2.7 22 69-90 31-52 (243)
448 1ji0_A ABC transporter; ATP bi 93.6 0.034 1.2E-06 47.4 2.7 42 137-178 157-200 (240)
449 3cr8_A Sulfate adenylyltranfer 93.6 0.043 1.5E-06 52.7 3.7 23 69-91 372-394 (552)
450 1ky3_A GTP-binding protein YPT 93.6 0.046 1.6E-06 43.6 3.4 23 68-90 10-32 (182)
451 2pze_A Cystic fibrosis transme 93.5 0.035 1.2E-06 46.9 2.7 42 137-178 148-191 (229)
452 1g16_A RAS-related protein SEC 93.5 0.043 1.5E-06 43.2 3.1 22 68-89 5-26 (170)
453 2olj_A Amino acid ABC transpor 93.5 0.035 1.2E-06 48.0 2.7 22 69-90 53-74 (263)
454 1p5z_B DCK, deoxycytidine kina 93.5 0.016 5.5E-07 50.0 0.5 24 68-91 26-49 (263)
455 2og2_A Putative signal recogni 93.5 0.047 1.6E-06 49.4 3.6 23 69-91 160-182 (359)
456 4a2p_A RIG-I, retinoic acid in 93.5 0.36 1.2E-05 46.0 10.1 36 52-90 11-46 (556)
457 1lw7_A Transcriptional regulat 93.5 0.038 1.3E-06 50.2 3.0 23 69-91 173-195 (365)
458 1zu4_A FTSY; GTPase, signal re 93.5 0.056 1.9E-06 48.2 4.0 24 69-92 108-131 (320)
459 1z47_A CYSA, putative ABC-tran 93.4 0.043 1.5E-06 49.6 3.2 22 69-90 44-65 (355)
460 3q85_A GTP-binding protein REM 93.4 0.048 1.7E-06 42.9 3.2 21 68-88 4-24 (169)
461 2zj8_A DNA helicase, putative 93.4 0.08 2.7E-06 52.7 5.4 24 67-90 40-64 (720)
462 3sqw_A ATP-dependent RNA helic 93.4 0.44 1.5E-05 46.0 10.6 32 52-84 47-78 (579)
463 2ixe_A Antigen peptide transpo 93.4 0.038 1.3E-06 48.0 2.7 42 137-178 174-218 (271)
464 2qi9_C Vitamin B12 import ATP- 93.4 0.038 1.3E-06 47.4 2.7 22 69-90 29-50 (249)
465 1vpl_A ABC transporter, ATP-bi 93.4 0.038 1.3E-06 47.6 2.7 42 137-178 164-207 (256)
466 2ghi_A Transport protein; mult 93.4 0.038 1.3E-06 47.7 2.7 43 137-179 173-216 (260)
467 4g1u_C Hemin import ATP-bindin 93.4 0.038 1.3E-06 47.9 2.6 42 137-178 165-209 (266)
468 1wf3_A GTP-binding protein; GT 93.3 0.69 2.4E-05 40.6 10.9 21 69-89 10-30 (301)
469 2yyz_A Sugar ABC transporter, 93.3 0.045 1.5E-06 49.5 3.2 22 69-90 32-53 (359)
470 4a4z_A Antiviral helicase SKI2 93.3 0.12 4.1E-06 53.4 6.7 34 52-88 43-76 (997)
471 1svi_A GTP-binding protein YSX 93.3 0.053 1.8E-06 43.9 3.4 24 66-89 23-46 (195)
472 2erx_A GTP-binding protein DI- 93.3 0.051 1.7E-06 42.8 3.2 22 68-89 5-26 (172)
473 1upt_A ARL1, ADP-ribosylation 93.3 0.055 1.9E-06 42.6 3.4 22 68-89 9-30 (171)
474 2ihy_A ABC transporter, ATP-bi 93.3 0.039 1.3E-06 48.1 2.7 22 69-90 50-71 (279)
475 2it1_A 362AA long hypothetical 93.3 0.046 1.6E-06 49.5 3.2 22 69-90 32-53 (362)
476 2wjg_A FEOB, ferrous iron tran 93.3 0.051 1.7E-06 43.8 3.2 21 69-89 10-30 (188)
477 4hlc_A DTMP kinase, thymidylat 93.3 0.06 2E-06 44.6 3.6 23 69-91 5-27 (205)
478 1x6v_B Bifunctional 3'-phospho 93.2 0.053 1.8E-06 52.7 3.7 23 69-91 55-77 (630)
479 3tbk_A RIG-I helicase domain; 93.2 0.41 1.4E-05 45.5 10.0 35 53-90 9-43 (555)
480 2oil_A CATX-8, RAS-related pro 93.2 0.057 2E-06 43.7 3.4 23 68-90 27-49 (193)
481 2y8e_A RAB-protein 6, GH09086P 93.2 0.053 1.8E-06 43.1 3.1 21 69-89 17-37 (179)
482 2yz2_A Putative ABC transporte 93.2 0.043 1.5E-06 47.5 2.7 43 137-179 156-200 (266)
483 1g29_1 MALK, maltose transport 93.1 0.05 1.7E-06 49.5 3.2 22 69-90 32-53 (372)
484 2yhs_A FTSY, cell division pro 93.1 0.057 2E-06 50.8 3.7 23 69-91 296-318 (503)
485 2qag_B Septin-6, protein NEDD5 93.1 0.037 1.3E-06 51.2 2.4 37 54-90 30-66 (427)
486 2hxs_A RAB-26, RAS-related pro 93.1 0.051 1.8E-06 43.2 2.9 21 69-89 9-29 (178)
487 2fn4_A P23, RAS-related protei 93.1 0.054 1.8E-06 43.1 3.1 22 69-90 12-33 (181)
488 2nq2_C Hypothetical ABC transp 93.1 0.044 1.5E-06 47.1 2.6 42 137-178 146-190 (253)
489 3hjn_A DTMP kinase, thymidylat 93.1 0.068 2.3E-06 44.0 3.7 26 69-94 3-28 (197)
490 2qm8_A GTPase/ATPase; G protei 93.0 0.072 2.5E-06 47.8 4.1 23 69-91 58-80 (337)
491 3ihw_A Centg3; RAS, centaurin, 93.0 0.061 2.1E-06 43.4 3.3 22 69-90 23-44 (184)
492 1j8m_F SRP54, signal recogniti 93.0 0.22 7.6E-06 43.7 7.2 24 69-92 101-124 (297)
493 1taf_B TFIID TBP associated fa 93.0 0.38 1.3E-05 32.0 6.5 58 204-261 11-69 (70)
494 2bme_A RAB4A, RAS-related prot 93.0 0.057 2E-06 43.3 3.1 22 69-90 13-34 (186)
495 2jlq_A Serine protease subunit 93.0 0.3 1E-05 45.6 8.4 20 68-87 21-41 (451)
496 1moz_A ARL1, ADP-ribosylation 92.9 0.053 1.8E-06 43.4 2.8 21 68-88 20-40 (183)
497 2pjz_A Hypothetical protein ST 92.9 0.048 1.7E-06 47.1 2.7 41 137-179 146-187 (263)
498 2gj8_A MNME, tRNA modification 92.9 0.056 1.9E-06 43.1 2.9 21 69-89 7-27 (172)
499 4ag6_A VIRB4 ATPase, type IV s 92.9 0.11 3.7E-06 47.6 5.2 38 66-105 35-72 (392)
500 3c5c_A RAS-like protein 12; GD 92.9 0.066 2.3E-06 43.3 3.4 22 69-90 24-45 (187)
No 1
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=4e-45 Score=336.18 Aligned_cols=322 Identities=36% Similarity=0.626 Sum_probs=283.5
Q ss_pred CCCCCCCCCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeee
Q psy17903 23 STSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL 102 (355)
Q Consensus 23 ~~~~~~~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~ 102 (355)
|++.+......||.+||||.+|++++|++++++.|..+++.++.+|++|+||+|+|||++++++++.+.+..+...+.++
T Consensus 3 ~~~~~~~~~~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 82 (340)
T 1sxj_C 3 TSTEKRSKENLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 82 (340)
T ss_dssp ---------CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred CCCCCccccCCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE
Confidence 34445555578999999999999999999999999999999999999999999999999999999999877666678899
Q ss_pred cCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccc
Q psy17903 103 NASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182 (355)
Q Consensus 103 ~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 182 (355)
++++..+.+.+++.+..+........ ++++++||||+|.++.+.++.|++++|+++.+++||+++|...++.+
T Consensus 83 ~~~~~~~~~~ir~~i~~~~~~~~~~~-------~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~ 155 (340)
T 1sxj_C 83 NASDDRGIDVVRNQIKDFASTRQIFS-------KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTP 155 (340)
T ss_dssp CTTSCCSHHHHHTHHHHHHHBCCSSS-------CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred cCcccccHHHHHHHHHHHHhhcccCC-------CCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccch
Confidence 99887788888887777664321110 14679999999999999999999999999999999999999999999
Q ss_pred cccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCC---CCCCHHHHHHH
Q psy17903 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGG---EGIVNEDVLEV 259 (355)
Q Consensus 183 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~---~~It~~~v~~~ 259 (355)
++++||..+.|.+++.+++.+++..+++.+++.+++++++.+++.++|++|++++.|+.++.+... ..||.+++.++
T Consensus 156 ~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~v~~~ 235 (340)
T 1sxj_C 156 ALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYEC 235 (340)
T ss_dssp HHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHHHHH
T ss_pred hHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999988765431 36999999999
Q ss_pred hCCCChHHHHHHHhc---CCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHhhCCC
Q psy17903 260 TGVIPNPWIEKLLKV---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLS-DKQKALILEKLAECNARLQDGA 334 (355)
Q Consensus 260 ~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~-~~~~~~i~~~l~~~~~~l~~g~ 334 (355)
+.......++++++. ++...+..++++++. .|+++.+++..+.++++.. .++ ...+.++++.+++++++|+.|.
T Consensus 236 ~~~~~~~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~g~ 314 (340)
T 1sxj_C 236 CGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY-ELQNEETRVHLLTKLADIEYSISKGG 314 (340)
T ss_dssp TTCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS-CCSSHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHHHhCC
Confidence 999999999999887 889999999999998 9999999999999988654 577 8999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHh
Q psy17903 335 SEYIQILDLGSIVIKANK 352 (355)
Q Consensus 335 ~~~~~l~~~~~~~~~~~~ 352 (355)
+..++||.|+.+++...+
T Consensus 315 ~~~l~le~l~~~l~~~~~ 332 (340)
T 1sxj_C 315 NDQIQGSAVIGAIKASFE 332 (340)
T ss_dssp CHHHHHHHHHHHHHHHCC
T ss_pred ChHHHHHHHHHHHHHHhh
Confidence 999999999999987654
No 2
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.8e-44 Score=332.21 Aligned_cols=323 Identities=46% Similarity=0.788 Sum_probs=278.6
Q ss_pred CCCCCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCC-ccccceeeecCC
Q psy17903 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNAS 105 (355)
Q Consensus 27 ~~~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~ 105 (355)
.++....||.+||+|.+|++++|++++++.+..++..+..+|++|+||||+|||++++++++.+.+. .....+++++++
T Consensus 19 ~~~~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~ 98 (353)
T 1sxj_D 19 EQSLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNAS 98 (353)
T ss_dssp -------CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSS
T ss_pred hhcccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccc
Confidence 3356678999999999999999999999999999999988889999999999999999999998542 234567888988
Q ss_pred CccchHHHHHHHHHHHHhhccCCCC---CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccc
Q psy17903 106 DDRGIQVIRDKVKTFAQQTASGFNQ---DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182 (355)
Q Consensus 106 ~~~~~~~i~~~i~~~~~~~~~~~~~---~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~ 182 (355)
+..+...+++.+..+.......... ...+..++++|||||+|.+....++.|++++++++..++||+++|.+..+.+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~ 178 (353)
T 1sxj_D 99 DERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIID 178 (353)
T ss_dssp SCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCH
T ss_pred cccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcc
Confidence 8777777776666655432111000 0011125679999999999999999999999999889999999999999999
Q ss_pred cccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCC----CCCHHHHHH
Q psy17903 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE----GIVNEDVLE 258 (355)
Q Consensus 183 ~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~----~It~~~v~~ 258 (355)
++++||..+.|.+++.+++..++..++..+++.+++++++.+++.++||+|.+++.++.++.+.+.. .||.++|.+
T Consensus 179 ~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~ 258 (353)
T 1sxj_D 179 PLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEE 258 (353)
T ss_dssp HHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHH
T ss_pred hhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999988775332 799999999
Q ss_pred HhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCC
Q psy17903 259 VTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGAS 335 (355)
Q Consensus 259 ~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~ 335 (355)
++.......+++++++ ++...+..+++++...|+++..++..+.+++.....++...+.++++.+++++++|++|.|
T Consensus 259 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~ 338 (353)
T 1sxj_D 259 LAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQISWLLFTTDSRLNNGTN 338 (353)
T ss_dssp HHTCCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 9998888888888887 8899999999999999999999999999999888789999999999999999999999999
Q ss_pred hHHHHHHHHHHHHH
Q psy17903 336 EYIQILDLGSIVIK 349 (355)
Q Consensus 336 ~~~~l~~~~~~~~~ 349 (355)
+.++++.|+.+++.
T Consensus 339 ~~l~l~~~~~~~~~ 352 (353)
T 1sxj_D 339 EHIQLLNLLVKISQ 352 (353)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHh
Confidence 99999999999874
No 3
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=1.1e-42 Score=316.98 Aligned_cols=310 Identities=43% Similarity=0.715 Sum_probs=276.9
Q ss_pred CCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccch
Q psy17903 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (355)
Q Consensus 31 ~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 110 (355)
+..||.+||+|.+|++++|++.+++.+.+++..+..++++|+||+|+|||++++++++.+.+..+...++++++++..+.
T Consensus 3 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 82 (319)
T 2chq_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (319)
T ss_dssp ---CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT
T ss_pred ccccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh
Confidence 35699999999999999999999999999999998888999999999999999999999877666667889998887676
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeee
Q psy17903 111 QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190 (355)
Q Consensus 111 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 190 (355)
+.+++.+..+....... . +++++|||||+|.++.+.++.|++++++++.++++|++++...++.+++.+||..
T Consensus 83 ~~~~~~~~~~~~~~~~~---~----~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 155 (319)
T 2chq_A 83 DVVRHKIKEFARTAPIG---G----APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (319)
T ss_dssp TTSSHHHHHHHHSCCSS---S----CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEE
T ss_pred HHHHHHHHHHHhcCCCC---C----CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeE
Confidence 66666666655222111 0 1467999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHH
Q psy17903 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270 (355)
Q Consensus 191 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~ 270 (355)
+.|.+++.+++..++..++.++++.+++++++.+++.++||+|.+++.+++++.. ++.|+.+++.+++.......+++
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~~~~~~~~~~ 233 (319)
T 2chq_A 156 FRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITATARPEEMTE 233 (319)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTTCCCHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHCCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998874 46799999999999998888999
Q ss_pred HHhc---CCHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy17903 271 LLKV---DSFQVLEKYIEDLIL-EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSI 346 (355)
Q Consensus 271 l~~~---~~~~~~~~~l~~l~~-~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~ 346 (355)
++++ ++...+..++.+++. .|+++..++..+.+++... .++...+.++++.+++++++++.|.+..+++|.++.+
T Consensus 234 l~~~~~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l-~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~ 312 (319)
T 2chq_A 234 LIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISM-PIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLAY 312 (319)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTS-CSCTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8887 899999999999997 9999999999999988754 5888999999999999999999999999999999999
Q ss_pred HHHH
Q psy17903 347 VIKA 350 (355)
Q Consensus 347 ~~~~ 350 (355)
++..
T Consensus 313 l~~~ 316 (319)
T 2chq_A 313 LSTL 316 (319)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9864
No 4
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.3e-42 Score=315.81 Aligned_cols=311 Identities=41% Similarity=0.685 Sum_probs=278.7
Q ss_pred CCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccch
Q psy17903 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (355)
Q Consensus 31 ~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 110 (355)
...||.+||+|.+|++++|++++++.+..++..+..++++|+||+|+|||++|+++++.+.+..+...++++++++..+.
T Consensus 11 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 90 (327)
T 1iqp_A 11 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGI 90 (327)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHH
T ss_pred cCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCch
Confidence 46799999999999999999999999999999998889999999999999999999999876655567888998877666
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeee
Q psy17903 111 QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190 (355)
Q Consensus 111 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 190 (355)
+.+++.+..+........ +++++|||||+|.++.+.++.|++++++++.+++||++++...++.+++.+||..
T Consensus 91 ~~~~~~~~~~~~~~~~~~-------~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~ 163 (327)
T 1iqp_A 91 NVIREKVKEFARTKPIGG-------ASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 163 (327)
T ss_dssp HTTHHHHHHHHHSCCGGG-------CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred HHHHHHHHHHHhhCCcCC-------CCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcE
Confidence 666666666553221110 1467999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHH
Q psy17903 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270 (355)
Q Consensus 191 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~ 270 (355)
+.|++++.+++..++..++..+++.+++++++.+++.++||+|.+++.+++++... ..||.+++.+++....+..+++
T Consensus 164 ~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~i~~~~v~~~~~~~~~~~i~~ 241 (327)
T 1iqp_A 164 FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALD--KKITDENVFMVASRARPEDIRE 241 (327)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SEECHHHHHHHTTCCCHHHHHH
T ss_pred EEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC--CCCCHHHHHHHHCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999887643 5799999999999999999999
Q ss_pred HHhc---CCHHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Q psy17903 271 LLKV---DSFQVLEKYIEDLI-LEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSI 346 (355)
Q Consensus 271 l~~~---~~~~~~~~~l~~l~-~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~ 346 (355)
++++ ++...+...+++++ ..|+++.+++..+.+++... .++...+.++++.+++++++++.|.+..++||.|+.+
T Consensus 242 l~~~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~-~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~ 320 (327)
T 1iqp_A 242 MMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL-PIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQ 320 (327)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGS-SSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8887 88999999999998 88999999999999987653 6899999999999999999999999999999999999
Q ss_pred HHHHH
Q psy17903 347 VIKAN 351 (355)
Q Consensus 347 ~~~~~ 351 (355)
++...
T Consensus 321 l~~~~ 325 (327)
T 1iqp_A 321 FTLIG 325 (327)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98764
No 5
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=1.7e-42 Score=316.67 Aligned_cols=302 Identities=24% Similarity=0.319 Sum_probs=253.6
Q ss_pred CCCCCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC
Q psy17903 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (355)
Q Consensus 27 ~~~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 105 (355)
+-.....+|.+||||++|++++|+++++..+.+++..+..++ +|++||||+|||++++++++.+ +..+++++++
T Consensus 8 ~~~~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l-----~~~~~~i~~~ 82 (324)
T 3u61_B 8 TVNEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV-----NADMMFVNGS 82 (324)
T ss_dssp CCCTTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT-----TEEEEEEETT
T ss_pred ccCcccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh-----CCCEEEEccc
Confidence 334677899999999999999999999999999999998888 7888889999999999999998 4578889987
Q ss_pred CccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC-HHHHHHHHHHhhhccCCccEEEEecCCccccccc
Q psy17903 106 DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT-HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184 (355)
Q Consensus 106 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 184 (355)
+. +.+.+++.+..+....... +++++|||||+|.++ .+.++.|++++++++.+++||+++|...++.+++
T Consensus 83 ~~-~~~~i~~~~~~~~~~~~~~--------~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l 153 (324)
T 3u61_B 83 DC-KIDFVRGPLTNFASAASFD--------GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPL 153 (324)
T ss_dssp TC-CHHHHHTHHHHHHHBCCCS--------SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTH
T ss_pred cc-CHHHHHHHHHHHHhhcccC--------CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHH
Confidence 74 4777777777665442211 156799999999999 9999999999999999999999999999999999
Q ss_pred cCCeeeEEecCCCHHH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHH
Q psy17903 185 TSRCSKFRFKPLAENT-------MLTRLQYICEQESVMCDF-KALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDV 256 (355)
Q Consensus 185 ~sr~~~i~~~~~~~~~-------~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v 256 (355)
++||..++|++|+.++ +..++...+..+++.+++ ++++.+++.++||+|.+++.|+.++ .++.||.+++
T Consensus 154 ~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~---~~~~i~~~~v 230 (324)
T 3u61_B 154 QSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS---SKGVLDAGIL 230 (324)
T ss_dssp HHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG---GGTCBCC---
T ss_pred HhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh---ccCCCCHHHH
Confidence 9999999999999877 456677777888999988 9999999999999999999999988 3457999999
Q ss_pred HHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCC
Q psy17903 257 LEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDG 333 (355)
Q Consensus 257 ~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g 333 (355)
.+++.. .+.++++++. ++...+..++++++. ++..++..+..++.. .++...+.++++.++++|++|+.|
T Consensus 231 ~~~~~~--~~~i~~~~~~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~--~~~~~~l~~i~~~l~~~d~~l~~g 303 (324)
T 3u61_B 231 SLVTND--RGAIDDVLESLKNKDVKQLRALAPKYAA---DYSWFVGKLAEEIYS--RVTPQSIIRMYEIVGENNQYHGIA 303 (324)
T ss_dssp -----------CHHHHHHHHTTCHHHHHHHHHHHSS---CHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHhCC--HHHHHHHHHHHHcCCHHHHHHHHHHhcc---CHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHHHhC
Confidence 988765 3455555554 899999999999876 899999999998877 689999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHh
Q psy17903 334 ASEYIQILDLGSIVIKANK 352 (355)
Q Consensus 334 ~~~~~~l~~~~~~~~~~~~ 352 (355)
.++.++||.|++++|..++
T Consensus 304 ~~~~~~le~~~~~~~~~~~ 322 (324)
T 3u61_B 304 ANTELHLAYLFIQLACEMQ 322 (324)
T ss_dssp SCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHhcc
Confidence 9999999999999998753
No 6
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.3e-41 Score=310.39 Aligned_cols=315 Identities=33% Similarity=0.559 Sum_probs=281.5
Q ss_pred CCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccch
Q psy17903 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (355)
Q Consensus 31 ~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 110 (355)
...||.++|+|.+|++++|++..++.|.+++..+..++++|+||+|+|||++++.+++.+.+..+...++++++++..+.
T Consensus 7 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 86 (323)
T 1sxj_B 7 LQLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGI 86 (323)
T ss_dssp CCCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSH
T ss_pred ccCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccCh
Confidence 46799999999999999999999999999999998888999999999999999999999876655667889998887778
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeee
Q psy17903 111 QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190 (355)
Q Consensus 111 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 190 (355)
+.+++.+..+....... .. +++++|||||+|.++.+.++.|++++++++.++++|++++...++.+++++||..
T Consensus 87 ~~i~~~~~~~~~~~~~~--~~----~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~ 160 (323)
T 1sxj_B 87 DVVRNQIKHFAQKKLHL--PP----GKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAI 160 (323)
T ss_dssp HHHHTHHHHHHHBCCCC--CT----TCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHHHHHHHHhccccC--CC----CCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceE
Confidence 88887777665321110 00 1367999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHH
Q psy17903 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEK 270 (355)
Q Consensus 191 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~ 270 (355)
+.|.+++.+++..++..++..+++.+++++++.+++.++||+|.+++.+++++... +.|+.+++.+++.......+++
T Consensus 161 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~~~~~~~i~~ 238 (323)
T 1sxj_B 161 LRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKIVDSPHPLIVKK 238 (323)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHHHTSCCHHHHHH
T ss_pred EeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988543 5799999999999998899999
Q ss_pred HHhcCCHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHH
Q psy17903 271 LLKVDSFQVLEKYIED-LILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIK 349 (355)
Q Consensus 271 l~~~~~~~~~~~~l~~-l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~ 349 (355)
+++.++...+..++.. ++..|+++.+++..+.+++.....++...+.++++.+.+++++++.|.|..++++.++.+++.
T Consensus 239 ~~~~~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l~~~~~~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~~~~~~ 318 (323)
T 1sxj_B 239 MLLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHK 318 (323)
T ss_dssp HHSCSSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHh
Confidence 9988888888888887 888899999999999998877544899999999999999999999999999999999999998
Q ss_pred HHhh
Q psy17903 350 ANKT 353 (355)
Q Consensus 350 ~~~~ 353 (355)
..+.
T Consensus 319 ~~~~ 322 (323)
T 1sxj_B 319 LNNK 322 (323)
T ss_dssp HTTC
T ss_pred hccC
Confidence 7654
No 7
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2e-41 Score=313.32 Aligned_cols=315 Identities=29% Similarity=0.427 Sum_probs=250.0
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHH-hcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCcc----------------
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY---------------- 95 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l-~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~---------------- 95 (355)
.+|++||||++|++++|++.+++.+.+++ ..++.+|++|+||+|+|||++++++++.+.+...
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 38999999999999999999999999999 8888888999999999999999999998754221
Q ss_pred --------ccceeeecCCCccchH--HHHHHHHHHHHhhccCCC--CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhh
Q psy17903 96 --------RERILELNASDDRGIQ--VIRDKVKTFAQQTASGFN--QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEK 163 (355)
Q Consensus 96 --------~~~~~~~~~~~~~~~~--~i~~~i~~~~~~~~~~~~--~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~ 163 (355)
...++++++.+..... .+++.+..+......... ..+ ...+++++||||++.+..+.++.|++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 1123455544322111 355555544322111000 000 012567999999999999999999999999
Q ss_pred ccCCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHHHHHHHH
Q psy17903 164 ETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCD-FKALETLVETSGGDMRRAITCLQSC 242 (355)
Q Consensus 164 ~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~g~~r~~~~~l~~~ 242 (355)
++.++.+|++|+++.++.+++++||..++|++++.+++..+++.+++++++.++ +++++.+++.++||+|.+++.++++
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~~~ 240 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESM 240 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 988999999999999999999999999999999999999999999999999999 9999999999999999999999998
Q ss_pred HHhhCCCCCCHHHHHHHhCCCChHHHHHHHhc-------CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHH
Q psy17903 243 ARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV-------DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQ 315 (355)
Q Consensus 243 ~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~-------~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~ 315 (355)
+.+.. +.||.+++ +......+.+++++++ +.+..+...+++++..|+++.+++.++..++.+.+.+++..
T Consensus 241 ~~~~~-~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~ 317 (354)
T 1sxj_E 241 ALNNE-LALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLLDVETLNTTN 317 (354)
T ss_dssp HHTTT-TEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTTTCTTSCHHH
T ss_pred HHhCC-CCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCHHH
Confidence 87642 25665543 1111122456666665 33556777788888899999999999998887766799999
Q ss_pred HHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHHH
Q psy17903 316 KALILEKLAECNARLQDGASEYIQILDLGSIVIKAN 351 (355)
Q Consensus 316 ~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~~~ 351 (355)
+.++++.++++|++++.|.++.++||.|+.++|..+
T Consensus 318 l~~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~~ 353 (354)
T 1sxj_E 318 KSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCCL 353 (354)
T ss_dssp HHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999998764
No 8
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=100.00 E-value=7.5e-38 Score=291.20 Aligned_cols=309 Identities=19% Similarity=0.268 Sum_probs=264.9
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc---------------
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY--------------- 95 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~--------------- 95 (355)
..+|.+||+|.+|++++|++++++.|.+++..++.+| ++|+||+|+|||++++++++.+.+...
T Consensus 3 ~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 82 (373)
T ss_dssp CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHH
T ss_pred cHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHH
Confidence 4689999999999999999999999999999998888 899999999999999999999865321
Q ss_pred ----ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEE
Q psy17903 96 ----RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171 (355)
Q Consensus 96 ----~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~I 171 (355)
...++++++....+.+.++..+..+...+.. +++++|||||+|.++.+.++.|++++++++.++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~I 153 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR---------GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFL 153 (373)
T ss_dssp HTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSS---------SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEE
T ss_pred hccCCCceEEecccccCCHHHHHHHHHHHhhcccc---------CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEE
Confidence 0134556655444555566555443221111 156799999999999999999999999999999999
Q ss_pred EEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCC
Q psy17903 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGI 251 (355)
Q Consensus 172 l~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~I 251 (355)
++++...++.+++++||..++|.+++.+++..++..++.+.|+.+++++++.+++.++||+|.+.+.++++..+. ++.|
T Consensus 154 l~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~-~~~i 232 (373)
T 1jr3_A 154 LATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DGQV 232 (373)
T ss_dssp EEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHT-TTCB
T ss_pred EEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhc-CCcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987764 5679
Q ss_pred CHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh---------------------
Q psy17903 252 VNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMS--------------------- 307 (355)
Q Consensus 252 t~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~--------------------- 307 (355)
|.++|.+++.......+++++++ ++...+...+..+...|.++..++..+.++++.
T Consensus 233 ~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~ 312 (373)
T 1jr3_A 233 STQAVSAMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELR 312 (373)
T ss_dssp CHHHHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHH
T ss_pred cHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCccccccchhHHHH
Confidence 99999999999988888888887 899999999999999999998888776655542
Q ss_pred ----cCCCCHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHHH
Q psy17903 308 ----ASSLSDKQKALILEKLAECNARLQDGASEYIQILDLGSIVIKA 350 (355)
Q Consensus 308 ----~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~l~~~~~~~~~~ 350 (355)
.+.++...+.++++.+.+++..+|.+.+..+.+|.++.+++..
T Consensus 313 ~~~~a~~~~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~~ 359 (373)
T 1jr3_A 313 MRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359 (373)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhc
Confidence 1347788888899999999999998899999999999999753
No 9
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=100.00 E-value=6.3e-33 Score=262.02 Aligned_cols=297 Identities=20% Similarity=0.264 Sum_probs=233.8
Q ss_pred CccccccCCCCCCcccccHHHH---HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVV---SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG 109 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~---~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 109 (355)
.||.++|||.+|++++|+++++ ..|...+..+..++++|+||||||||++|+.+++.+ +..++.+++.. .+
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~-----~~~f~~l~a~~-~~ 87 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA-----NADVERISAVT-SG 87 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT-----TCEEEEEETTT-CC
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh-----CCCeEEEEecc-CC
Confidence 6999999999999999999999 899999999998889999999999999999999998 34567777655 45
Q ss_pred hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEec--CCccccccccCC
Q psy17903 110 IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN--YVSCIIQPLTSR 187 (355)
Q Consensus 110 ~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~--~~~~l~~~l~sr 187 (355)
...+++.+.......... .+++|||||+|.++...|+.|+..+++ ..+++|++|+ ....+.++|.+|
T Consensus 88 ~~~ir~~~~~a~~~~~~~---------~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR 156 (447)
T 3pvs_A 88 VKEIREAIERARQNRNAG---------RRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSR 156 (447)
T ss_dssp HHHHHHHHHHHHHHHHTT---------CCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTT
T ss_pred HHHHHHHHHHHHHhhhcC---------CCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCc
Confidence 666666665544332211 456999999999999999999999997 4567777774 345688999999
Q ss_pred eeeEEecCCCHHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhC-C----CCCCHHH
Q psy17903 188 CSKFRFKPLAENTMLTRLQYICEQ-------ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKG-G----EGIVNED 255 (355)
Q Consensus 188 ~~~i~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~-~----~~It~~~ 255 (355)
|.++.|.+++.+++..++...+.. .++.+++++++.|++.++||+|.+++.|+.+..++. . ..||.++
T Consensus 157 ~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~ 236 (447)
T 3pvs_A 157 ARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPEL 236 (447)
T ss_dssp EEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHH
T ss_pred eeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHH
Confidence 999999999999999999999987 567799999999999999999999999999998874 1 3699999
Q ss_pred HHHHhCCCCh----------HHHHHHHhc---CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy17903 256 VLEVTGVIPN----------PWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEK 322 (355)
Q Consensus 256 v~~~~~~~~~----------~~~~~l~~~---~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~ 322 (355)
+.+++..... +.+..+.+. .+.+.+..++.++++.|.++..|...+.+......+..+.....+...
T Consensus 237 v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~ 316 (447)
T 3pvs_A 237 LTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIA 316 (447)
T ss_dssp HHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHH
T ss_pred HHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHH
Confidence 9999987642 344455544 789999999999999999999999999999987655555444444443
Q ss_pred HHHHHHHhhCC-CChHHHHHHHHHHHH
Q psy17903 323 LAECNARLQDG-ASEYIQILDLGSIVI 348 (355)
Q Consensus 323 l~~~~~~l~~g-~~~~~~l~~~~~~~~ 348 (355)
+..+-.. -| ..-++.|...+..++
T Consensus 317 ~~~~~~~--~g~pe~~~~l~~~~~~la 341 (447)
T 3pvs_A 317 AWDCFTR--VGPAEGERAIAQAIVYLA 341 (447)
T ss_dssp HHHHHHH--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH--hCCcHHHHHHHHHHHHHH
Confidence 3333333 46 366677777766665
No 10
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=3.9e-34 Score=257.26 Aligned_cols=277 Identities=13% Similarity=0.085 Sum_probs=223.1
Q ss_pred ccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhc-CCccccceeeecCCC-ccchHHHHHHHHHHHHhhcc
Q psy17903 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF-GDMYRERILELNASD-DRGIQVIRDKVKTFAQQTAS 126 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~-~~~~~~i~~~i~~~~~~~~~ 126 (355)
||+++++.|.+.+++++.+++|||||+|+|||++|+++++.+. +.....++.++++++ ..+++.+++.+..+...+..
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~ 80 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPEL 80 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSS
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhcccc
Confidence 7889999999999999855699999999999999999998743 111244778888875 68888999877766543322
Q ss_pred CCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeeeEEecCCCHHHHHHHHH
Q psy17903 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206 (355)
Q Consensus 127 ~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~ 206 (355)
+++||+||||+|.|+.+++++|+++||+|+.+++||++|+++.++.++++|| .++|++++.+++..|+.
T Consensus 81 ---------~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l~~~~i~~~L~ 149 (305)
T 2gno_A 81 ---------YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVNVPKEFRDLVK 149 (305)
T ss_dssp ---------SSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECCCCHHHHHHHH
T ss_pred ---------CCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCCCHHHHHHHHH
Confidence 2678999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH-------hhCCCCCCHHHHHHHhCCCChH--HHHHHHhc---
Q psy17903 207 YICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR-------LKGGEGIVNEDVLEVTGVIPNP--WIEKLLKV--- 274 (355)
Q Consensus 207 ~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~-------~~~~~~It~~~v~~~~~~~~~~--~~~~l~~~--- 274 (355)
+++ .++++++ ..+.||+|.+++.++.... +... .-+.++|..++....+. .+++++++
T Consensus 150 ~~~-----~i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~-~~~~~~v~~~~~~~~~~~~~v~~l~~ai~~ 219 (305)
T 2gno_A 150 EKI-----GDLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKV-LETEKLLKKVLSKGLEGYLACRELLERFSK 219 (305)
T ss_dssp HHH-----TTHHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHTTTTTCSHHHHHHHHHHHHHHHHH
T ss_pred HHh-----CCCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHccCCcchHHHHHHHHHHHC
Confidence 887 3666665 4578999999888853221 0000 11467777877776644 78999988
Q ss_pred CCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhC---CCChHHHHHHHHHHHHH
Q psy17903 275 DSFQVLEKYIEDLIL--EAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQD---GASEYIQILDLGSIVIK 349 (355)
Q Consensus 275 ~~~~~~~~~l~~l~~--~g~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~~---g~~~~~~l~~~~~~~~~ 349 (355)
++...+...+++++. .|+++.+++..+.+.+.....+. +.+.++.++.+++++.. |.++.++|+.++.+++.
T Consensus 220 ~~~~~a~~~~~~l~~~~~g~~~~~~i~~~~r~l~~~~~~~---~~~~l~~~~~~~~~~~~k~~g~~~~lql~~l~~~~~~ 296 (305)
T 2gno_A 220 VESKEFFALFDQVTNTITGKDAFLLIQRLTRIILHENTWE---SVEDQKSVSFLDSILRVKIANLNNKLTLMNILAIHRE 296 (305)
T ss_dssp SCGGGHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHTSCCC---SHHHHHHHHHHHHHHTCCGGGCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhhchhh---hHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 999999999999998 89999888888888777543333 23456688888888888 89999999999999973
No 11
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=100.00 E-value=5.9e-31 Score=240.82 Aligned_cols=284 Identities=17% Similarity=0.160 Sum_probs=213.7
Q ss_pred cccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc-------------------ccceeeecCC--
Q psy17903 48 IEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-------------------RERILELNAS-- 105 (355)
Q Consensus 48 vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~-------------------~~~~~~~~~~-- 105 (355)
-.+++..+.|.+.+++++.+| +||+||+|+|||++|+++++.+.+... ..++..+++.
T Consensus 5 pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~ 84 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKG 84 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTT
T ss_pred CchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEecccc
Confidence 457888899999999999999 999999999999999999999986432 1356677764
Q ss_pred -CccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccc
Q psy17903 106 -DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPL 184 (355)
Q Consensus 106 -~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l 184 (355)
...+++.+++.+..+...+.. ++++|+||||+|.|+.+++++|+++||+++.+++||++|++++++.+++
T Consensus 85 ~~~~~i~~ir~l~~~~~~~~~~---------~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti 155 (334)
T 1a5t_A 85 KNTLGVDAVREVTEKLNEHARL---------GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATL 155 (334)
T ss_dssp CSSBCHHHHHHHHHHTTSCCTT---------SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHH
T ss_pred CCCCCHHHHHHHHHHHhhcccc---------CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHH
Confidence 456778888776654433221 2578999999999999999999999999999999999999999999999
Q ss_pred cCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCC
Q psy17903 185 TSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIP 264 (355)
Q Consensus 185 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~ 264 (355)
+|||..++|++++.+++.+|+..++ .+++++++.+++.++||+|.+++.++...... ..++.+.+..+.....
T Consensus 156 ~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~--~~~~~~~~~~~~~~~~ 228 (334)
T 1a5t_A 156 RSRCRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQA--RETLCQALAYSVPSGD 228 (334)
T ss_dssp HTTSEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHH--HHHHHHHHHHHHHHCC
T ss_pred hhcceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHHH--HHHHHHHHHHHHhChH
Confidence 9999999999999999999999764 68899999999999999999999998654321 2344555555543111
Q ss_pred hHHHHHHHhcCCHHHHHH----HHHHHHHcC-----CCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh--CC
Q psy17903 265 NPWIEKLLKVDSFQVLEK----YIEDLILEA-----YSATQLFDQFHDIVMSASSLSDKQKALILEKLAECNARLQ--DG 333 (355)
Q Consensus 265 ~~~~~~l~~~~~~~~~~~----~l~~l~~~g-----~~~~~i~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~l~--~g 333 (355)
...+.+.+...+...+.. ++++++... +...+....+.+.. ..++...+.++++.+.+++.+++ .|
T Consensus 229 ~~~~~~~l~~~~~~~~l~~l~~~~rdll~~~~~~~~~~~~~~~~~~~~~a---~~~~~~~l~~~~~~l~~~~~~l~~~~~ 305 (334)
T 1a5t_A 229 WYSLLAALNHEQAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELA---NHLSPSRLQAILGDVCHIREQLMSVTG 305 (334)
T ss_dssp CGGGHHHHCSTTHHHHHHHHHHHHHHHTCC------CCCTTCHHHHHHHH---HHSCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCccccCHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHHHHhcCC
Confidence 001112222234444333 333443221 11112223333322 24789999999999999999999 88
Q ss_pred CChHHHHHHHHHHHHHH
Q psy17903 334 ASEYIQILDLGSIVIKA 350 (355)
Q Consensus 334 ~~~~~~l~~~~~~~~~~ 350 (355)
.|..+++|.++.+++..
T Consensus 306 ~n~~l~le~ll~~l~~~ 322 (334)
T 1a5t_A 306 INRELLITDLLLRIEHY 322 (334)
T ss_dssp SSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999999764
No 12
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.98 E-value=8.9e-31 Score=225.38 Aligned_cols=222 Identities=51% Similarity=0.853 Sum_probs=194.6
Q ss_pred CCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccch
Q psy17903 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (355)
Q Consensus 31 ~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 110 (355)
...+|.++|+|..|++++|++..++.+.+++..+..++++|+||+|+|||++++.+++.+....+...++.+++....+.
T Consensus 3 ~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 82 (226)
T 2chg_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI 82 (226)
T ss_dssp -CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCH
T ss_pred chhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccCh
Confidence 34789999999999999999999999999999888778999999999999999999999876666667888888877777
Q ss_pred HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCccccccccCCeee
Q psy17903 111 QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSK 190 (355)
Q Consensus 111 ~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~ 190 (355)
..+...+..+....... ..+..+|||||+|.+....++.|+.++++.+.++++|++++....+.+++.+|+..
T Consensus 83 ~~~~~~~~~~~~~~~~~-------~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~ 155 (226)
T 2chg_A 83 DVVRHKIKEFARTAPIG-------GAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAV 155 (226)
T ss_dssp HHHHHHHHHHHTSCCST-------TCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEE
T ss_pred HHHHHHHHHHhcccCCC-------ccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCce
Confidence 76666666554331110 01456999999999999999999999999888899999999988899999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhC
Q psy17903 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261 (355)
Q Consensus 191 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~ 261 (355)
+.|++++.+++..++...+...+..+++++++.+++.++||+|.+.+.++.++..+ +.||.++|+++++
T Consensus 156 i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 156 FRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999998865 7899999998875
No 13
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=99.98 E-value=1.3e-31 Score=246.36 Aligned_cols=278 Identities=11% Similarity=0.064 Sum_probs=229.7
Q ss_pred HHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCcc-ccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCC
Q psy17903 57 LKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY-RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKP 134 (355)
Q Consensus 57 l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~ 134 (355)
+.+.++ ++.+| ||||||+|+||++.+..+++.+.+..+ ....+++++. ..+ ++.+......+..+
T Consensus 9 l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~~~~~~plf~------- 75 (343)
T 1jr3_D 9 LRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN--TDW---NAIFSLCQAMSLFA------- 75 (343)
T ss_dssp HHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT--CCH---HHHHHHHHHHHHCC-------
T ss_pred HHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC--CCH---HHHHHHhcCcCCcc-------
Confidence 445566 45555 999999999999999999998764322 2234455532 233 44444443334332
Q ss_pred CCCcEEEEEeCCCC-CCHHHHHHHHHHhhhccCCccEEEEecCC------ccccccccCCeeeEEecCCCHHHHHHHHHH
Q psy17903 135 CPPFKIVILDEADS-MTHAAQAALRRTMEKETKSTRFCLICNYV------SCIIQPLTSRCSKFRFKPLAENTMLTRLQY 207 (355)
Q Consensus 135 ~~~~~vliiDe~d~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~------~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~ 207 (355)
++|+|+|||++. ++.+.+++|++++++++.+++||++++.. .++.+++.+||..++|.+++.+++..|++.
T Consensus 76 --~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~ 153 (343)
T 1jr3_D 76 --SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA 153 (343)
T ss_dssp --SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred --CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence 678999999999 99999999999999999999999998763 458899999999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhCCCChHHHHHHHhc---CCHHHHHHHH
Q psy17903 208 ICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTGVIPNPWIEKLLKV---DSFQVLEKYI 284 (355)
Q Consensus 208 ~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~---~~~~~~~~~l 284 (355)
+++++|+.+++++++.|++.++||+|.+.++|++++.+.+++.||.++|.+++.......+++++++ ++...+...+
T Consensus 154 ~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~~d~~~al~~l 233 (343)
T 1jr3_D 154 RAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALHIL 233 (343)
T ss_dssp HHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999876678999999999988877888999988 8899999999
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHh---------------------------------cCCCCHHHHHHHHHHHHHHHHHhh
Q psy17903 285 EDLILEAYSATQLFDQFHDIVMS---------------------------------ASSLSDKQKALILEKLAECNARLQ 331 (355)
Q Consensus 285 ~~l~~~g~~~~~i~~~l~~~~~~---------------------------------~~~~~~~~~~~i~~~l~~~~~~l~ 331 (355)
..+...|.++..++..+.++++. .+.++...+.++++.+.++|..+|
T Consensus 234 ~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~L~~~l~~l~~~d~~lK 313 (343)
T 1jr3_D 234 QQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAVQLLTRTELTLK 313 (343)
T ss_dssp TSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 98888899888888776655542 124667778889999999999999
Q ss_pred CCC--ChHHHHHHHHHHHHH
Q psy17903 332 DGA--SEYIQILDLGSIVIK 349 (355)
Q Consensus 332 ~g~--~~~~~l~~~~~~~~~ 349 (355)
+|. +.++.||.++.+++.
T Consensus 314 ~~~~~~~~~~le~l~l~l~~ 333 (343)
T 1jr3_D 314 QDYGQSVWAELEGLSLLLCH 333 (343)
T ss_dssp HSSCSCHHHHHHHHHHHTTS
T ss_pred CCCCCCHHHHHHHHHHHHcC
Confidence 983 678999999999863
No 14
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.97 E-value=9.9e-29 Score=215.37 Aligned_cols=222 Identities=23% Similarity=0.357 Sum_probs=180.1
Q ss_pred CCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccc------------
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR------------ 96 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~------------ 96 (355)
....+|.++|+|..|++++|++..++.|..++..+..++ ++|+||+|+|||++++.+++.+......
T Consensus 8 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 8 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp ---CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred hHHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 346789999999999999999999999999999887766 9999999999999999999988643210
Q ss_pred -------cceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCcc
Q psy17903 97 -------ERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTR 169 (355)
Q Consensus 97 -------~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~ 169 (355)
..++.++.......+.+...+..+... ... .+..+|||||+|.+..+.++.|++.+++.+..++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~----~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~ 158 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA-----PAR----GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVK 158 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCS-----CSS----SSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEE
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhc-----hhc----CCceEEEEECcccccHHHHHHHHHHHhcCCCceE
Confidence 123444444333333333332221100 001 1456999999999999999999999998888899
Q ss_pred EEEEecCCccccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCC
Q psy17903 170 FCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGE 249 (355)
Q Consensus 170 ~Il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~ 249 (355)
+|++++....+.+++.+|+..++|++++.+++.+++..++...+..+++++++.+++.++|++|.+.+.++.+..++ .+
T Consensus 159 ~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~-~~ 237 (250)
T 1njg_A 159 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASG-DG 237 (250)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTT-TS
T ss_pred EEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc-Cc
Confidence 99999998888899999999999999999999999999999999999999999999999999999999999987664 45
Q ss_pred CCCHHHHHHHhC
Q psy17903 250 GIVNEDVLEVTG 261 (355)
Q Consensus 250 ~It~~~v~~~~~ 261 (355)
.||.++++++++
T Consensus 238 ~i~~~~v~~~~~ 249 (250)
T 1njg_A 238 QVSTQAVSAMLG 249 (250)
T ss_dssp SBCHHHHHHHSC
T ss_pred eecHHHHHHHhC
Confidence 899999998865
No 15
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.96 E-value=6.7e-28 Score=232.81 Aligned_cols=226 Identities=27% Similarity=0.423 Sum_probs=172.1
Q ss_pred CCCCCCCccccccCCCCCCcccccHHHHHHHHHHHhcC-----------------CCCeEEEECCCCCCHHHHHHHHHHH
Q psy17903 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA-----------------DLPHFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 27 ~~~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~-----------------~~~~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.......+|++||+|.+|++++|++.+++.|.+++... ..+++||+||||+|||++|+++++.
T Consensus 21 ~~~~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~ 100 (516)
T 1sxj_A 21 PHMASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 100 (516)
T ss_dssp -----CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 33456689999999999999999999999999998751 2345999999999999999999999
Q ss_pred hcCCccccceeeecCCCccchHHHHHHHHHHHHhh-ccCCCCCC----CCCCCcEEEEEeCCCCCCHHHH---HHHHHHh
Q psy17903 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQT-ASGFNQDG----KPCPPFKIVILDEADSMTHAAQ---AALRRTM 161 (355)
Q Consensus 90 l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~-~~~~~~~~----~~~~~~~vliiDe~d~l~~~~~---~~Ll~~l 161 (355)
+ +..++++++++......+...+....... ........ .......+|||||+|.+....+ +.|+.++
T Consensus 101 l-----~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l 175 (516)
T 1sxj_A 101 L-----GYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFC 175 (516)
T ss_dssp T-----TCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHH
T ss_pred c-----CCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHH
Confidence 8 45788999988766554443332221110 00000000 0112557999999999976544 7788888
Q ss_pred hhccCCccEEEEecCCc-cccccccCCeeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHH
Q psy17903 162 EKETKSTRFCLICNYVS-CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQ 240 (355)
Q Consensus 162 e~~~~~~~~Il~~~~~~-~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~ 240 (355)
+... ..+|++++... ..++++.+||..+.|++|+.+++..++..++..+++.+++++++.|++.++||+|.+++.|+
T Consensus 176 ~~~~--~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 176 RKTS--TPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp HHCS--SCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTTCHHHHHHHHT
T ss_pred HhcC--CCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 8643 44666676543 45577999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCCCCHHHHHHHhC
Q psy17903 241 SCARLKGGEGIVNEDVLEVTG 261 (355)
Q Consensus 241 ~~~~~~~~~~It~~~v~~~~~ 261 (355)
.++. +++.|+.+++.+++.
T Consensus 254 ~~~~--~~~~It~~~v~~~~~ 272 (516)
T 1sxj_A 254 TIST--TTKTINHENINEISK 272 (516)
T ss_dssp HHHH--HSSCCCTTHHHHHHH
T ss_pred HHHh--cCCCCchHHHHHHHH
Confidence 8775 446799999887764
No 16
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.95 E-value=1.6e-26 Score=212.03 Aligned_cols=212 Identities=20% Similarity=0.224 Sum_probs=168.2
Q ss_pred CCCCCccccccCCCCCCcccccHHHHHHHHHHHhc-----CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeec
Q psy17903 29 RNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (355)
Q Consensus 29 ~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 103 (355)
......|.++|+|.+|++++|++.++..+..++.. ...+++||+||+|||||++|+++++.+ ...++.++
T Consensus 13 ~~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~-----~~~~~~~~ 87 (338)
T 3pfi_A 13 YSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM-----SANIKTTA 87 (338)
T ss_dssp ----------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT-----TCCEEEEE
T ss_pred cchhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh-----CCCeEEec
Confidence 35667999999999999999999999999988864 334459999999999999999999997 34567777
Q ss_pred CCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccC-----------------
Q psy17903 104 ASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETK----------------- 166 (355)
Q Consensus 104 ~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~----------------- 166 (355)
+........+...+... ++..+|||||++.+..+.++.|+..+++...
T Consensus 88 ~~~~~~~~~~~~~~~~~---------------~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3pfi_A 88 APMIEKSGDLAAILTNL---------------SEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDL 152 (338)
T ss_dssp GGGCCSHHHHHHHHHTC---------------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCC
T ss_pred chhccchhHHHHHHHhc---------------cCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCC
Confidence 76554444444333220 1335999999999999999999999987531
Q ss_pred -CccEEEEecCCccccccccCCe-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy17903 167 -STRFCLICNYVSCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCAR 244 (355)
Q Consensus 167 -~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~ 244 (355)
.+++|++||....+.+++++|+ ..++|++|+.+++..++...+...+..+++++++.+++.++||+|.+.+.++.+..
T Consensus 153 ~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~ 232 (338)
T 3pfi_A 153 PKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRD 232 (338)
T ss_dssp CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2678889999888999999999 69999999999999999999999999999999999999999999999999998755
Q ss_pred hh---CCCCCCHHHHHHHh
Q psy17903 245 LK---GGEGIVNEDVLEVT 260 (355)
Q Consensus 245 ~~---~~~~It~~~v~~~~ 260 (355)
++ +...|+.+++..++
T Consensus 233 ~a~~~~~~~i~~~~~~~~~ 251 (338)
T 3pfi_A 233 FADVNDEEIITEKRANEAL 251 (338)
T ss_dssp HHHHTTCSEECHHHHHHHH
T ss_pred HHHhhcCCccCHHHHHHHH
Confidence 44 45679999988765
No 17
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.94 E-value=4.8e-25 Score=200.86 Aligned_cols=208 Identities=22% Similarity=0.227 Sum_probs=168.2
Q ss_pred ccccccCCCCCCcccccHHHHHHHHHHHhc-----CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc
Q psy17903 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (355)
Q Consensus 34 ~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 108 (355)
+|.++|+|.+|++++|++..+..+..++.. ....+++|+||+|+|||++|+++++.+. ..++.+++....
T Consensus 1 ~~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~-----~~~~~~~~~~~~ 75 (324)
T 1hqc_A 1 MEDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG-----VNLRVTSGPAIE 75 (324)
T ss_dssp ----CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHT-----CCEEEECTTTCC
T ss_pred CCccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEeccccC
Confidence 467899999999999999999988888753 2334599999999999999999999983 356677776654
Q ss_pred chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc------------------CCccE
Q psy17903 109 GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET------------------KSTRF 170 (355)
Q Consensus 109 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------~~~~~ 170 (355)
....+...+.. . . ++..+|||||++.+....++.|+..+++.. ..+++
T Consensus 76 ~~~~l~~~l~~----~---~-------~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 76 KPGDLAAILAN----S---L-------EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp SHHHHHHHHTT----T---C-------CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred ChHHHHHHHHH----h---c-------cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 44443332221 0 0 134599999999999999999999998753 34678
Q ss_pred EEEecCCccccccccCCe-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh---
Q psy17903 171 CLICNYVSCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--- 246 (355)
Q Consensus 171 Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--- 246 (355)
|+++|....+.+++.+|+ ..+.|.+|+.+++..++...+...+..+++++++.++..++|++|.+.+.++.+..++
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~ 221 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVA 221 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTT
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHh
Confidence 999998888999999999 5899999999999999999999889999999999999999999999999999887665
Q ss_pred CCCCCCHHHHHHHh
Q psy17903 247 GGEGIVNEDVLEVT 260 (355)
Q Consensus 247 ~~~~It~~~v~~~~ 260 (355)
+...|+.+++..++
T Consensus 222 ~~~~i~~~~~~~~~ 235 (324)
T 1hqc_A 222 GEEVITRERALEAL 235 (324)
T ss_dssp SCSCCCHHHHHHHH
T ss_pred cCCCCCHHHHHHHH
Confidence 35579999887765
No 18
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.94 E-value=4.5e-25 Score=204.64 Aligned_cols=226 Identities=18% Similarity=0.242 Sum_probs=171.0
Q ss_pred CCCCCccccccCCCC-CCcccccHHHHHH---HHHHHhcCCCC--eEEEECCCCCCHHHHHHHHHHHhcCCccccceeee
Q psy17903 29 RNKPVPWVEKYRPKT-IDDVIEQQEVVSV---LKKCLSGADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL 102 (355)
Q Consensus 29 ~~~~~~~~~k~~p~~-~~~~vg~~~~~~~---l~~~l~~~~~~--~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~ 102 (355)
......+.++++|.. |++++|++.++.. +.+.+..+..+ ++||+||||+|||++|+++++.+.... +++.+
T Consensus 27 ~~~~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~---~~~~~ 103 (368)
T 3uk6_A 27 HIRGLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDT---PFTAI 103 (368)
T ss_dssp TCCSCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSC---CEEEE
T ss_pred hhhccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccC---Ccccc
Confidence 445678889999998 9999999998766 55666777665 599999999999999999999986421 23333
Q ss_pred cCCCc--------------------------------------------------cc-----hHHHHHHHHHHHHhhccC
Q psy17903 103 NASDD--------------------------------------------------RG-----IQVIRDKVKTFAQQTASG 127 (355)
Q Consensus 103 ~~~~~--------------------------------------------------~~-----~~~i~~~i~~~~~~~~~~ 127 (355)
++... .+ ...++..+..+.......
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 183 (368)
T 3uk6_A 104 AGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREE 183 (368)
T ss_dssp EGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhh
Confidence 32110 00 223333333322211100
Q ss_pred CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEec------------CCccccccccCCeeeEEecC
Q psy17903 128 FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN------------YVSCIIQPLTSRCSKFRFKP 195 (355)
Q Consensus 128 ~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~------------~~~~l~~~l~sr~~~i~~~~ 195 (355)
+.......+|||||+|.+..+.++.|++.++++...+ ++++++ .+..+.+++++||..+.|++
T Consensus 184 ----g~~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~ 258 (368)
T 3uk6_A 184 ----GKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTP 258 (368)
T ss_dssp ----TC---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECC
T ss_pred ----ccccccCceEEEhhccccChHHHHHHHHHhhCcCCCe-eeeecccceeeeeccCCCCcccCCHHHHhhccEEEecC
Confidence 0000012399999999999999999999999877654 444554 24567899999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCC
Q psy17903 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSG-GDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGV 262 (355)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-g~~r~~~~~l~~~~~~~---~~~~It~~~v~~~~~~ 262 (355)
|+.+++..+++.++...+..+++++++.+++.+. ||+|.+.+.++.+..++ +...||.++|.+++..
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999998 99999999999987765 5678999999988764
No 19
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.91 E-value=1.8e-23 Score=198.98 Aligned_cols=124 Identities=19% Similarity=0.209 Sum_probs=111.8
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEe---------cC----CccccccccCCeeeEEecCCCHHHHHHHH
Q psy17903 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLIC---------NY----VSCIIQPLTSRCSKFRFKPLAENTMLTRL 205 (355)
Q Consensus 139 ~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~---------~~----~~~l~~~l~sr~~~i~~~~~~~~~~~~~l 205 (355)
+|+||||+|.|+.++++.|++.||+++.. +||+++ .+ +..+.++++|||..++|++++.+++.+++
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 59999999999999999999999999888 678787 33 66788999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCC
Q psy17903 206 QYICEQESVMCDFKALETLVETS-GGDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVI 263 (355)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~---~~~~It~~~v~~~~~~~ 263 (355)
+.++..+++.++++++..++..+ .|++|.+++.++.+..++ +...|+.++|.+++...
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 99999999999999999999999 999999999999885554 66789999999887544
No 20
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.91 E-value=1.3e-23 Score=182.90 Aligned_cols=213 Identities=15% Similarity=0.227 Sum_probs=165.2
Q ss_pred CCCCccccccCC-CCCCcccc---cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC
Q psy17903 30 NKPVPWVEKYRP-KTIDDVIE---QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (355)
Q Consensus 30 ~~~~~~~~k~~p-~~~~~~vg---~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 105 (355)
..+.+|..+|+| .+|+++++ +..++..+..++..+...+++|+||+|+|||++++++++.+.... ..++.+++.
T Consensus 12 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~--~~~~~~~~~ 89 (242)
T 3bos_A 12 PLQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELE--RRSFYIPLG 89 (242)
T ss_dssp -CCCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTT--CCEEEEEGG
T ss_pred hhhcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcC--CeEEEEEHH
Confidence 457899999999 68999997 357888999998876666799999999999999999999986542 245555554
Q ss_pred CccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHH--HHHHHHHhhhccC-Cc-cEEEEecCCc---
Q psy17903 106 DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA--QAALRRTMEKETK-ST-RFCLICNYVS--- 178 (355)
Q Consensus 106 ~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~--~~~Ll~~le~~~~-~~-~~Il~~~~~~--- 178 (355)
+.... +...+..+ ....+|||||++.+.... ++.|+.+++.... .. .+|++++...
T Consensus 90 ~~~~~--~~~~~~~~---------------~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 90 IHASI--STALLEGL---------------EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp GGGGS--CGGGGTTG---------------GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred HHHHH--HHHHHHhc---------------cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 32110 00000000 023499999999997655 7888888775432 22 4777777433
Q ss_pred -cccccccCCe---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCC
Q psy17903 179 -CIIQPLTSRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIV 252 (355)
Q Consensus 179 -~l~~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~~~It 252 (355)
...+.+.+|+ ..+.|++|+.+++.+++...+...++.+++++++.+++.++||+|.+.+.++++..++ .+..||
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~~~It 232 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLT 232 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3458899999 7999999999999999999999999999999999999999999999999999988776 456799
Q ss_pred HHHHHHHhC
Q psy17903 253 NEDVLEVTG 261 (355)
Q Consensus 253 ~~~v~~~~~ 261 (355)
.+++.+++.
T Consensus 233 ~~~v~~~l~ 241 (242)
T 3bos_A 233 IPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhh
Confidence 999998764
No 21
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.91 E-value=1.1e-22 Score=185.78 Aligned_cols=209 Identities=21% Similarity=0.228 Sum_probs=162.3
Q ss_pred ccccccCCCCCCcccccHHHHHHHHHHHhcC-----CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc
Q psy17903 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGA-----DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (355)
Q Consensus 34 ~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~-----~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 108 (355)
+|.++++|++|++++|++.+++.+...+..+ ...+++|+||+|+||||+++++++.+... +...++....
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~-----~~~~sg~~~~ 88 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN-----IHVTSGPVLV 88 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-----EEEEETTTCC
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-----EEEEechHhc
Confidence 6899999999999999999999988887643 33569999999999999999999998432 2233333322
Q ss_pred chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc------------------CCccE
Q psy17903 109 GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET------------------KSTRF 170 (355)
Q Consensus 109 ~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~------------------~~~~~ 170 (355)
....+...... . . ..++++|||++.+.+..++.|+..++... ..+.+
T Consensus 89 ~~~~l~~~~~~---~--~----------~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 89 KQGDMAAILTS---L--E----------RGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp SHHHHHHHHHH---C--C----------TTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred CHHHHHHHHHH---c--c----------CCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 22333222211 0 0 23499999999999888888887776432 12456
Q ss_pred EEEecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh---
Q psy17903 171 CLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--- 246 (355)
Q Consensus 171 Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--- 246 (355)
+.+++.+..+.+++++||. .+.|.+++.+++.+++++.++..++.++++++..+++.+.|++|.+.+.|+.+..++
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~ 233 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVV 233 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence 6778888889999999996 688999999999999999999889999999999999999999999999999876555
Q ss_pred CCCCCCHHHHHHHhCC
Q psy17903 247 GGEGIVNEDVLEVTGV 262 (355)
Q Consensus 247 ~~~~It~~~v~~~~~~ 262 (355)
+.+.||.+++.+++..
T Consensus 234 ~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 234 KADRINTDIVLKTMEV 249 (334)
T ss_dssp TCSSBCHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHH
Confidence 4568999999887753
No 22
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.90 E-value=1e-21 Score=183.09 Aligned_cols=291 Identities=15% Similarity=0.137 Sum_probs=198.6
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhc----CCCC--eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG----ADLP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~----~~~~--~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 105 (355)
..+|..+|+| ++++|++..++.+..++.. .... +++|+||+|+|||++++.+++.+.... ...++.+++.
T Consensus 7 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~i~~~ 82 (389)
T 1fnn_A 7 DSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT-TARFVYINGF 82 (389)
T ss_dssp GGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC-CCEEEEEETT
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc-CeeEEEEeCc
Confidence 4578889998 6799999999988888764 2323 699999999999999999999985542 3467788876
Q ss_pred CccchHH-HHHHHHHHHHhhccCCCCCC-----------CCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc----CCcc
Q psy17903 106 DDRGIQV-IRDKVKTFAQQTASGFNQDG-----------KPCPPFKIVILDEADSMTHAAQAALRRTMEKET----KSTR 169 (355)
Q Consensus 106 ~~~~~~~-i~~~i~~~~~~~~~~~~~~~-----------~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~----~~~~ 169 (355)
....... +......+.. ......... ....+..+|||||+|.+..+.+..|++.+++.+ .++.
T Consensus 83 ~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~ 161 (389)
T 1fnn_A 83 IYRNFTAIIGEIARSLNI-PFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIA 161 (389)
T ss_dssp TCCSHHHHHHHHHHHTTC-CCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEE
T ss_pred cCCCHHHHHHHHHHHhCc-cCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEE
Confidence 5443322 2221111100 000000000 000134599999999999999999999998654 4788
Q ss_pred EEEEecCC---ccccccccCCee--eEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHc---------CCCHH
Q psy17903 170 FCLICNYV---SCIIQPLTSRCS--KFRFKPLAENTMLTRLQYICEQE--SVMCDFKALETLVETS---------GGDMR 233 (355)
Q Consensus 170 ~Il~~~~~---~~l~~~l~sr~~--~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~---------~g~~r 233 (355)
+|++++.. ..+.+.+.+|+. .+.|++++.+++.+++...+... ...+++++++.+++.+ +||+|
T Consensus 162 iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r 241 (389)
T 1fnn_A 162 LVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDAR 241 (389)
T ss_dssp EEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHH
T ss_pred EEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHH
Confidence 88888876 567788888877 69999999999999999998762 3478999999999999 89999
Q ss_pred HHHHHHHHHHHhh---CCCCCCHHHHHHHhCCCChHHHHHHHhc--CCHHHHHHHHHHHH--HcC--CCHHHHHHHHHHH
Q psy17903 234 RAITCLQSCARLK---GGEGIVNEDVLEVTGVIPNPWIEKLLKV--DSFQVLEKYIEDLI--LEA--YSATQLFDQFHDI 304 (355)
Q Consensus 234 ~~~~~l~~~~~~~---~~~~It~~~v~~~~~~~~~~~~~~l~~~--~~~~~~~~~l~~l~--~~g--~~~~~i~~~l~~~ 304 (355)
.+++.++.+...+ +...|+.+++.++........+.+.++. .+...+...+..+. ..| .+...++..+...
T Consensus 242 ~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~ 321 (389)
T 1fnn_A 242 LAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIV 321 (389)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHH
Confidence 9999999887665 4567999999877654433333444443 22233333344443 233 4556666666655
Q ss_pred HHhc--CCCCHHHHHHHHHHHHHHH
Q psy17903 305 VMSA--SSLSDKQKALILEKLAECN 327 (355)
Q Consensus 305 ~~~~--~~~~~~~~~~i~~~l~~~~ 327 (355)
+... ..++.....++++.|....
T Consensus 322 ~~~~~~~~~~~~~~~~~l~~L~~~g 346 (389)
T 1fnn_A 322 CEEYGERPRVHSQLWSYLNDLREKG 346 (389)
T ss_dssp HHHTTCCCCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCCHHHHHHHHHHHHhCC
Confidence 5432 2345666666666666544
No 23
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.89 E-value=3.4e-22 Score=186.11 Aligned_cols=230 Identities=18% Similarity=0.225 Sum_probs=166.6
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhc----CCCCeEEEECCCCCCHHHHHHHHHHHhcCC----ccccceeeecC
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG----ADLPHFLFYGPPGTGKTSTMIAACHQLFGD----MYRERILELNA 104 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~----~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~----~~~~~~~~~~~ 104 (355)
.+|..+|.| ++++|++..++.+..++.. +...+++|+||+|+|||++++.+++.+... ..+..++.+++
T Consensus 10 ~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 86 (387)
T 2v1u_A 10 WVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNA 86 (387)
T ss_dssp HHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEET
T ss_pred HhcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 456667777 6799999999999998854 344459999999999999999999987432 11346778887
Q ss_pred CCccchHHHHHH-HHH------------------HHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH--HHHHHHHHhhh
Q psy17903 105 SDDRGIQVIRDK-VKT------------------FAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--AQAALRRTMEK 163 (355)
Q Consensus 105 ~~~~~~~~i~~~-i~~------------------~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--~~~~Ll~~le~ 163 (355)
........+... +.. +.... ... ....+|||||+|.+... .++.|..+++.
T Consensus 87 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l----~~~----~~~~vlilDEi~~l~~~~~~~~~l~~l~~~ 158 (387)
T 2v1u_A 87 RHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRL----SRL----RGIYIIVLDEIDFLPKRPGGQDLLYRITRI 158 (387)
T ss_dssp TTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHH----TTS----CSEEEEEEETTTHHHHSTTHHHHHHHHHHG
T ss_pred CcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHH----hcc----CCeEEEEEccHhhhcccCCCChHHHhHhhc
Confidence 664433222111 111 10000 000 13459999999999776 66777666654
Q ss_pred c-----cCCccEEEEecCC---ccccccccCCe--eeEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcC--
Q psy17903 164 E-----TKSTRFCLICNYV---SCIIQPLTSRC--SKFRFKPLAENTMLTRLQYICEQ--ESVMCDFKALETLVETSG-- 229 (355)
Q Consensus 164 ~-----~~~~~~Il~~~~~---~~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~~-- 229 (355)
. ...+++|++++.. ..+.+++.+|+ ..+.|++++.+++..++...+.. .+..+++++++.+++.++
T Consensus 159 ~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 238 (387)
T 2v1u_A 159 NQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAARE 238 (387)
T ss_dssp GGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSS
T ss_pred hhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHh
Confidence 3 4567888888876 56788899998 68999999999999999999876 567789999999999998
Q ss_pred -CCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCCChHHHHHHHh
Q psy17903 230 -GDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVIPNPWIEKLLK 273 (355)
Q Consensus 230 -g~~r~~~~~l~~~~~~~---~~~~It~~~v~~~~~~~~~~~~~~l~~ 273 (355)
||+|.+++.++.+...+ +...|+.+++.+++.........+.+.
T Consensus 239 ~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~ 286 (387)
T 2v1u_A 239 HGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIERDRVSEVVR 286 (387)
T ss_dssp SCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhhchHHHHHH
Confidence 99999999999887765 456799999998876553333333333
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.89 E-value=1e-21 Score=183.35 Aligned_cols=210 Identities=18% Similarity=0.165 Sum_probs=156.7
Q ss_pred ccccccCCCCCCcccccHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceee
Q psy17903 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSG------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILE 101 (355)
Q Consensus 34 ~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~ 101 (355)
.|.++|+|.+|++++|++.+++.|..++.. ....++||+||||||||++|+++++.+ +..++.
T Consensus 104 ~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~-----~~~~~~ 178 (389)
T 3vfd_A 104 EIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES-----NATFFN 178 (389)
T ss_dssp TTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT-----TCEEEE
T ss_pred hhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh-----cCcEEE
Confidence 699999999999999999999999988721 123459999999999999999999997 456788
Q ss_pred ecCCCccch------HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHhhhc
Q psy17903 102 LNASDDRGI------QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT-----------HAAQAALRRTMEKE 164 (355)
Q Consensus 102 ~~~~~~~~~------~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~~ 164 (355)
+++.+..+. ..+...+...... ...+|||||+|.+. ...++.|+..++..
T Consensus 179 v~~~~l~~~~~g~~~~~~~~~~~~a~~~-------------~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~ 245 (389)
T 3vfd_A 179 ISAASLTSKYVGEGEKLVRALFAVAREL-------------QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGV 245 (389)
T ss_dssp ECSCCC-------CHHHHHHHHHHHHHS-------------SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHH
T ss_pred eeHHHhhccccchHHHHHHHHHHHHHhc-------------CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcc
Confidence 888764321 1222222222211 22499999999883 33456677777643
Q ss_pred ----cCCccEEEEecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHH
Q psy17903 165 ----TKSTRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCL 239 (355)
Q Consensus 165 ----~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l 239 (355)
...+++|++||.+..+.+++.+||. .+.|+.|+.++...+++.++...+..++++.+..++..+.|..+..++.|
T Consensus 246 ~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 246 QSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp C-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 3467888899999999999999996 79999999999999999999999999999999999999999877666555
Q ss_pred HHHHH-hh---------------CCCCCCHHHHHHHhC
Q psy17903 240 QSCAR-LK---------------GGEGIVNEDVLEVTG 261 (355)
Q Consensus 240 ~~~~~-~~---------------~~~~It~~~v~~~~~ 261 (355)
...+. .+ ....|+.+++..++.
T Consensus 326 ~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~ 363 (389)
T 3vfd_A 326 AKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLK 363 (389)
T ss_dssp HHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHH
Confidence 43332 21 123567777766554
No 25
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.88 E-value=1.9e-21 Score=181.09 Aligned_cols=291 Identities=16% Similarity=0.122 Sum_probs=186.8
Q ss_pred CCCccccccCCCCCCcccccHHHHHHHHHHHh----cCCCCeEEEECCCCCCHHHHHHHHHHHhcCCc-----c-cccee
Q psy17903 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS----GADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----Y-RERIL 100 (355)
Q Consensus 31 ~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~----~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~-----~-~~~~~ 100 (355)
...+|..+|+| ++++|++..++.+..++. .+..++++|+||+|+|||++++.+++.+.... . ...++
T Consensus 9 ~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 85 (384)
T 2qby_B 9 PKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQA 85 (384)
T ss_dssp TTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEE
T ss_pred cHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEE
Confidence 35688999998 679999999988886664 33344599999999999999999999874321 1 45677
Q ss_pred eecCCCcc-chHH-HHHHHHHHHHhhccCCCCCC---------CCCCCcEEEEEeCCCCCCHHH-HHH-HHHHhhhccCC
Q psy17903 101 ELNASDDR-GIQV-IRDKVKTFAQQTASGFNQDG---------KPCPPFKIVILDEADSMTHAA-QAA-LRRTMEKETKS 167 (355)
Q Consensus 101 ~~~~~~~~-~~~~-i~~~i~~~~~~~~~~~~~~~---------~~~~~~~vliiDe~d~l~~~~-~~~-Ll~~le~~~~~ 167 (355)
.+++.... .... +...+..+............ .......+|||||+|.+.... ++. +..+++.. .+
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-~~ 164 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-AN 164 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS-SC
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC-cc
Confidence 78765433 2221 22222221100000000000 000012399999999986542 445 44455444 67
Q ss_pred ccEEEEecCC---ccccccccCCe-eeEEecCCCHHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHcC---CCHHHHHHH
Q psy17903 168 TRFCLICNYV---SCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQ--ESVMCDFKALETLVETSG---GDMRRAITC 238 (355)
Q Consensus 168 ~~~Il~~~~~---~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~l~~~~~---g~~r~~~~~ 238 (355)
+++|++++.. ..+.+++.+|+ ..+.|++++.+++..++..++.. .+..+++++++.+++.++ ||+|.+++.
T Consensus 165 ~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~ 244 (384)
T 2qby_B 165 ISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNL 244 (384)
T ss_dssp EEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred eEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHH
Confidence 8889999876 56788888884 69999999999999999999875 456789999999999988 999999999
Q ss_pred HHHHHHhhC-CCCCCHHHHHHHhCCCChHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCCHHH
Q psy17903 239 LQSCARLKG-GEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSA--SSLSDKQ 315 (355)
Q Consensus 239 l~~~~~~~~-~~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~~~--~~~~~~~ 315 (355)
++.+...+. ...|+.+++.+++.........+.++.-+ ...+.++..+.. +....++...+...+... ...+...
T Consensus 245 l~~a~~~a~~~~~i~~~~v~~~~~~~~~~~~~~~~~~l~-~~~~~~l~al~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~ 322 (384)
T 2qby_B 245 LFRAAQLASGGGIIRKEHVDKAIVDYEQERLIEAVKALP-FHYKLALRSLIE-SEDVMSAHKMYTDLCNKFKQKPLSYRR 322 (384)
T ss_dssp HHHHHHHTTSSSCCCHHHHHHHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHT-CCBHHHHHHHHHHHHHHTTCCCCCHHH
T ss_pred HHHHHHHhcCCCccCHHHHHHHHHHHhcchHHHHHHcCC-HHHHHHHHHHHH-hcccChHHHHHHHHHHHcCCCCCCHHH
Confidence 999887764 36799999998876654444444443222 333344444443 222123333333333321 2345555
Q ss_pred HHHHHHHHHHHH
Q psy17903 316 KALILEKLAECN 327 (355)
Q Consensus 316 ~~~i~~~l~~~~ 327 (355)
..++++.|....
T Consensus 323 ~~~~l~~L~~~g 334 (384)
T 2qby_B 323 FSDIISELDMFG 334 (384)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 555555555443
No 26
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=6.5e-21 Score=174.85 Aligned_cols=213 Identities=19% Similarity=0.256 Sum_probs=150.3
Q ss_pred CCCCccccccCCCCCCcccccHHHHHHHHHHHhc-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccc
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------A-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYR 96 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~ 96 (355)
.-..+..++-...+|+++.|.+++++.|++.+.- | ..|. +|||||||||||.+|+++|+++ +
T Consensus 133 ~~~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~-----~ 207 (405)
T 4b4t_J 133 LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT-----D 207 (405)
T ss_dssp CTTSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH-----T
T ss_pred hhhhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh-----C
Confidence 3344555555556899999999999999887631 2 2333 9999999999999999999998 4
Q ss_pred cceeeecCCCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHH
Q psy17903 97 ERILELNASDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAA 156 (355)
Q Consensus 97 ~~~~~~~~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~ 156 (355)
.+++.+++++... ...++..+....... | -||||||+|.+.. ...+.
T Consensus 208 ~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~a---------P----~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~ 274 (405)
T 4b4t_J 208 CKFIRVSGAELVQKYIGEGSRMVRELFVMAREHA---------P----SIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLE 274 (405)
T ss_dssp CEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHTC---------S----EEEEEESSSCCTTSCSCSSSGGGGHHHHHHHH
T ss_pred CCceEEEhHHhhccccchHHHHHHHHHHHHHHhC---------C----ceEeeecchhhccCCCCCCCCCcHHHHHHHHH
Confidence 5677777765322 234444444433322 1 2999999999843 12455
Q ss_pred HHHHhhh--ccCCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Q psy17903 157 LRRTMEK--ETKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG- 230 (355)
Q Consensus 157 Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g- 230 (355)
|+..|+. ...++++|++||.++.+++++.+ |+. .|+|+.|+.++..++++.++++.++. ++..++.|++.+.|
T Consensus 275 lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~ 353 (405)
T 4b4t_J 275 LLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGC 353 (405)
T ss_dssp HHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSC
T ss_pred HHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCC
Confidence 6666663 34567889999999999999988 554 89999999999999999887654432 12247888888876
Q ss_pred CHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 231 DMRRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 231 ~~r~~~~~l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
+.+.+.+.+..++..+ +...|+.+|+..++.
T Consensus 354 SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~ 387 (405)
T 4b4t_J 354 SGADVKGVCTEAGMYALRERRIHVTQEDFELAVG 387 (405)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 3444444455444433 456799999988764
No 27
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.88 E-value=4.4e-21 Score=172.56 Aligned_cols=215 Identities=17% Similarity=0.160 Sum_probs=160.7
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHhcCCcccccee
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERIL 100 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~ 100 (355)
..|.++|+|.+|++++|++.+++.|.+.+.. ....+++|+||||||||++|+++++.+ ..+++
T Consensus 9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~-----~~~~~ 83 (297)
T 3b9p_A 9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC-----SATFL 83 (297)
T ss_dssp TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT-----TCEEE
T ss_pred HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh-----CCCeE
Confidence 3578899999999999999999999988743 122349999999999999999999997 34566
Q ss_pred eecCCCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHhhh
Q psy17903 101 ELNASDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT-----------HAAQAALRRTMEK 163 (355)
Q Consensus 101 ~~~~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~ 163 (355)
.+++++... ...++..+...... ...+|||||+|.+. ...++.|+..++.
T Consensus 84 ~i~~~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 150 (297)
T 3b9p_A 84 NISAASLTSKYVGDGEKLVRALFAVARHM-------------QPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDG 150 (297)
T ss_dssp EEESTTTSSSSCSCHHHHHHHHHHHHHHT-------------CSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHH
T ss_pred EeeHHHHhhcccchHHHHHHHHHHHHHHc-------------CCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhc
Confidence 777765321 12222222222111 23599999999884 3445677877776
Q ss_pred cc-----CCccEEEEecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH-
Q psy17903 164 ET-----KSTRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI- 236 (355)
Q Consensus 164 ~~-----~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~- 236 (355)
.+ ..+++|++||.++.+.+++.+||. .+.++.|+.++...+++..+...+..+++++++.+++.+.|..+..+
T Consensus 151 ~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 151 LPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp CC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHH
T ss_pred ccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH
Confidence 54 347788899999999999999985 78999999999999999999988888999999999999999877555
Q ss_pred HHHHHHHHhh---------------CCCCCCHHHHHHHhCCCCh
Q psy17903 237 TCLQSCARLK---------------GGEGIVNEDVLEVTGVIPN 265 (355)
Q Consensus 237 ~~l~~~~~~~---------------~~~~It~~~v~~~~~~~~~ 265 (355)
+.++.++..+ ....|+.+++..++....+
T Consensus 231 ~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~ 274 (297)
T 3b9p_A 231 ALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRR 274 (297)
T ss_dssp HHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCC
T ss_pred HHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCC
Confidence 4444433222 1246899999988877654
No 28
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.88 E-value=1.1e-21 Score=180.58 Aligned_cols=193 Identities=15% Similarity=0.176 Sum_probs=138.3
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHh----------c-CCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccccee
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLS----------G-ADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERIL 100 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~----------~-~~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~ 100 (355)
..|..++.+.+|++++|++.+++.|.+.+. . ...+ ++||+||||||||++|+++++.+. .+++
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-----~~~~ 113 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN-----STFF 113 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT-----CEEE
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC-----CCEE
Confidence 456678888999999999999999998873 1 2222 399999999999999999999983 4566
Q ss_pred eecCCCcc------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH-----------HHHHHHHHhhh
Q psy17903 101 ELNASDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-----------AQAALRRTMEK 163 (355)
Q Consensus 101 ~~~~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~Ll~~le~ 163 (355)
.+++++.. ....++..+...... ...||||||+|.+... .++.|+..|+.
T Consensus 114 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-------------~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~ 180 (355)
T 2qp9_X 114 SVSSSDLVSKWMGESEKLVKQLFAMAREN-------------KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNG 180 (355)
T ss_dssp EEEHHHHHSCC---CHHHHHHHHHHHHHT-------------SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHH
T ss_pred EeeHHHHhhhhcchHHHHHHHHHHHHHHc-------------CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhc
Confidence 66654321 112222222222111 2349999999998632 35677777764
Q ss_pred ---ccCCccEEEEecCCccccccccCCe-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Q psy17903 164 ---ETKSTRFCLICNYVSCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITC 238 (355)
Q Consensus 164 ---~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~ 238 (355)
....+++|++||.++.+.+++.+|+ ..+.++.|+.++...+++.++...+..+++..++.|++.+.| +.+.+.+.
T Consensus 181 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 181 VGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp CC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred ccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 3456888889999999999999999 489999999999999999999888777899999999999988 55566665
Q ss_pred HHHHH
Q psy17903 239 LQSCA 243 (355)
Q Consensus 239 l~~~~ 243 (355)
++.+.
T Consensus 261 ~~~A~ 265 (355)
T 2qp9_X 261 VKDAL 265 (355)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 29
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.87 E-value=2.3e-21 Score=176.33 Aligned_cols=193 Identities=15% Similarity=0.188 Sum_probs=145.8
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHh----------cCC-C-CeEEEECCCCCCHHHHHHHHHHHhcCCccccce
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS----------GAD-L-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERI 99 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~----------~~~-~-~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~ 99 (355)
...|..++.+.+|++++|++.+++.|...+. .+. . .++||+||||||||++|+++++.+ +.++
T Consensus 5 ~~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-----~~~~ 79 (322)
T 3eie_A 5 FTAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA-----NSTF 79 (322)
T ss_dssp -CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH-----TCEE
T ss_pred ccceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH-----CCCE
Confidence 3468889999999999999999999998872 222 2 249999999999999999999997 4456
Q ss_pred eeecCCCccc--h----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhh
Q psy17903 100 LELNASDDRG--I----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTME 162 (355)
Q Consensus 100 ~~~~~~~~~~--~----~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le 162 (355)
+.+++++... . ..++..+...... ...+|||||+|.+.. ..++.|+..++
T Consensus 80 ~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~ 146 (322)
T 3eie_A 80 FSVSSSDLVSKWMGESEKLVKQLFAMAREN-------------KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMN 146 (322)
T ss_dssp EEEEHHHHHTTTGGGHHHHHHHHHHHHHHT-------------SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHG
T ss_pred EEEchHHHhhcccchHHHHHHHHHHHHHhc-------------CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhc
Confidence 6777654211 1 1222222222211 234999999998854 23567777776
Q ss_pred h---ccCCccEEEEecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Q psy17903 163 K---ETKSTRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAIT 237 (355)
Q Consensus 163 ~---~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~ 237 (355)
. ....+++|++||.++.+.+++++|+. .+.|+.|+.++...+++..+...+..++++.++.|+..+.| +.+.+.+
T Consensus 147 ~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~ 226 (322)
T 3eie_A 147 GVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAV 226 (322)
T ss_dssp GGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHH
T ss_pred cccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHH
Confidence 3 34567888899999999999999995 78999999999999999999888888899999999999977 4555555
Q ss_pred HHHHH
Q psy17903 238 CLQSC 242 (355)
Q Consensus 238 ~l~~~ 242 (355)
.++.+
T Consensus 227 l~~~a 231 (322)
T 3eie_A 227 VVKDA 231 (322)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 30
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=1.4e-21 Score=176.83 Aligned_cols=212 Identities=16% Similarity=0.170 Sum_probs=158.1
Q ss_pred CCCCccccccCCCCC-------C-cccccHHHHHHHHHHHh---------------cCCCCeEEEECCCCCCHHHHHHHH
Q psy17903 30 NKPVPWVEKYRPKTI-------D-DVIEQQEVVSVLKKCLS---------------GADLPHFLFYGPPGTGKTSTMIAA 86 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~-------~-~~vg~~~~~~~l~~~l~---------------~~~~~~~ll~Gp~G~GKt~la~~l 86 (355)
+.+.++.+.|++..+ + +++|++.+++.|.+++. .....++||+||||||||++|+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~l 87 (309)
T 3syl_A 8 PTSIDLRAEYEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKM 87 (309)
T ss_dssp CSCCCHHHHHHHTTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHH
T ss_pred CCCCCCChhhccccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHH
Confidence 334566777776653 3 68999999999887764 223335999999999999999999
Q ss_pred HHHhcCCcc--ccceeeecCCCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCC---------
Q psy17903 87 CHQLFGDMY--RERILELNASDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM--------- 149 (355)
Q Consensus 87 ~~~l~~~~~--~~~~~~~~~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l--------- 149 (355)
++.+..... ..+++.+++.+... ...+...+... ...+|||||+|.+
T Consensus 88 a~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~----------------~~~vl~iDEid~l~~~~~~~~~ 151 (309)
T 3syl_A 88 AGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA----------------MGGVLFIDEAYYLYRPDNERDY 151 (309)
T ss_dssp HHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH----------------TTSEEEEETGGGSCCCC---CC
T ss_pred HHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc----------------CCCEEEEEChhhhccCCCcccc
Confidence 999854322 33567777654311 11122222211 1139999999977
Q ss_pred CHHHHHHHHHHhhhccCCccEEEEecCCc-----cccccccCCe-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHH
Q psy17903 150 THAAQAALRRTMEKETKSTRFCLICNYVS-----CIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALET 223 (355)
Q Consensus 150 ~~~~~~~Ll~~le~~~~~~~~Il~~~~~~-----~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 223 (355)
....++.|+..+++...++++|++++... .+.+++++|+ ..++|++|+.+++..+++.++.+.+..+++++++.
T Consensus 152 ~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~ 231 (309)
T 3syl_A 152 GQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETA 231 (309)
T ss_dssp THHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 77889999999999888889999987542 2468999999 69999999999999999999999999999999999
Q ss_pred HHHH--------cCCCHHHHHHHHHHHHHhh-------CCCCCCHHHHH
Q psy17903 224 LVET--------SGGDMRRAITCLQSCARLK-------GGEGIVNEDVL 257 (355)
Q Consensus 224 l~~~--------~~g~~r~~~~~l~~~~~~~-------~~~~It~~~v~ 257 (355)
++.. ..||+|.+.+.++.+...+ .++.++.+++.
T Consensus 232 l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 232 LRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp HHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred HHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 9886 4599999999999887422 23556666654
No 31
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.87 E-value=2.8e-20 Score=171.13 Aligned_cols=215 Identities=20% Similarity=0.226 Sum_probs=150.5
Q ss_pred CCCCCCCccccccCCCCCCcccccHHHHHHHHHHHh-----------cC-CCCe-EEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 27 KTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-----------GA-DLPH-FLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 27 ~~~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~-----------~~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
..+.-..+..++-...+|+++.|.+++++.|.+.+. .| ..|. +|||||||||||++|+++|+++
T Consensus 164 ~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~--- 240 (437)
T 4b4t_I 164 ADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT--- 240 (437)
T ss_dssp SSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH---
T ss_pred cCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh---
Confidence 334445556666566799999999999999988763 12 2333 9999999999999999999998
Q ss_pred ccccceeeecCCCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HH
Q psy17903 94 MYRERILELNASDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AA 153 (355)
Q Consensus 94 ~~~~~~~~~~~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~ 153 (355)
+.+++.+++++... ...++..+....... | -||||||+|.+.. ..
T Consensus 241 --~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~a---------P----~IIfiDEiDai~~~R~~~~~~~~~~~~~~ 305 (437)
T 4b4t_I 241 --SATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENA---------P----SIVFIDEIDAIGTKRYDSNSGGEREIQRT 305 (437)
T ss_dssp --TCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHTC---------S----EEEEEEEESSSSCCCSCSSCSSCCHHHHH
T ss_pred --CCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhcC---------C----cEEEEehhhhhcccCCCCCCCccHHHHHH
Confidence 45677777665322 123444444333322 1 2999999998843 12
Q ss_pred HHHHHHHhhh--ccCCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q psy17903 154 QAALRRTMEK--ETKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLVET 227 (355)
Q Consensus 154 ~~~Ll~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~ 227 (355)
...|+..++. ...++++|++||.++.+++++.+ |+. .|+|+.|+.++..++++.++++.. ++++ .++.|++.
T Consensus 306 l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~ 383 (437)
T 4b4t_I 306 MLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTT 383 (437)
T ss_dssp HHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHH
T ss_pred HHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHh
Confidence 3455555553 34567899999999999999998 554 799999999999999998886544 3332 37888888
Q ss_pred cCC-CHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 228 SGG-DMRRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 228 ~~g-~~r~~~~~l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
+.| +.+.+.+.+..++..+ +...|+.+|+.+++.
T Consensus 384 T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 384 KDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKE 421 (437)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 866 3444444454444433 456799999988764
No 32
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.86 E-value=1.1e-20 Score=166.26 Aligned_cols=208 Identities=14% Similarity=0.094 Sum_probs=151.8
Q ss_pred ccccccCCCCCCcccccHHHHHHHHHHHhc-----------CC-CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceee
Q psy17903 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------AD-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILE 101 (355)
Q Consensus 34 ~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~~-~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~ 101 (355)
+|.+++++.+|++++|.+.+++.+.+.+.. .. ..+++|+||+|+|||++++++++.+. .+++.
T Consensus 1 ~~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~ 75 (257)
T 1lv7_A 1 MLTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK-----VPFFT 75 (257)
T ss_dssp CEEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT-----CCEEE
T ss_pred CCCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC-----CCEEE
Confidence 589999999999999999999888776532 12 23499999999999999999999873 34667
Q ss_pred ecCCCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHh
Q psy17903 102 LNASDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTM 161 (355)
Q Consensus 102 ~~~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~l 161 (355)
+++.+... ...++..+...... ...++||||+|.+.. ...+.++..+
T Consensus 76 i~~~~~~~~~~~~~~~~~~~~~~~a~~~-------------~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l 142 (257)
T 1lv7_A 76 ISGSDFVEMFVGVGASRVRDMFEQAKKA-------------APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEM 142 (257)
T ss_dssp ECSCSSTTSCCCCCHHHHHHHHHHHHTT-------------CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHH
T ss_pred EeHHHHHHHhhhhhHHHHHHHHHHHHHc-------------CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHh
Confidence 77665321 22333333332211 124999999976642 2345566666
Q ss_pred hh--ccCCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCC-CHHH
Q psy17903 162 EK--ETKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLVETSGG-DMRR 234 (355)
Q Consensus 162 e~--~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g-~~r~ 234 (355)
+. ....+++|++||.++.+.+++.+ |+. .+.|+.|+.++..++++..++... ++++ ....++..+.| +.|.
T Consensus 143 ~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~~~d 220 (257)
T 1lv7_A 143 DGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFSGAD 220 (257)
T ss_dssp HTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHH
T ss_pred hCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCCHHH
Confidence 64 24467788899999889899887 654 789999999999999988876543 3333 36678888999 9999
Q ss_pred HHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 235 AITCLQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 235 ~~~~l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
+.+.++.+..++ +...|+.+++.+++.
T Consensus 221 l~~l~~~a~~~a~~~~~~~i~~~~~~~a~~ 250 (257)
T 1lv7_A 221 LANLVNEAALFAARGNKRVVSMVEFEKAKD 250 (257)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHHHH
Confidence 999998887665 356899999988764
No 33
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.86 E-value=3.1e-20 Score=171.17 Aligned_cols=190 Identities=15% Similarity=0.154 Sum_probs=143.8
Q ss_pred cccccCCCCCCcccccHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeee
Q psy17903 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSG------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL 102 (355)
Q Consensus 35 ~~~k~~p~~~~~~vg~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~ 102 (355)
+.++++|.+|++++|++.+++.|.+.+.. ....++||+||||||||++|+++++.+ +.+++.+
T Consensus 74 i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~-----~~~~~~i 148 (357)
T 3d8b_A 74 IMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS-----GATFFSI 148 (357)
T ss_dssp TBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT-----TCEEEEE
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc-----CCeEEEE
Confidence 66788999999999999999999988742 223349999999999999999999997 3466777
Q ss_pred cCCCccch------HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhhh--
Q psy17903 103 NASDDRGI------QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK-- 163 (355)
Q Consensus 103 ~~~~~~~~------~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~-- 163 (355)
++++.... ..++..+...... ...+|||||+|.+.. ..++.|+..++.
T Consensus 149 ~~~~l~~~~~g~~~~~~~~~~~~a~~~-------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~ 215 (357)
T 3d8b_A 149 SASSLTSKWVGEGEKMVRALFAVARCQ-------------QPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT 215 (357)
T ss_dssp EGGGGCCSSTTHHHHHHHHHHHHHHHT-------------CSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC--
T ss_pred ehHHhhccccchHHHHHHHHHHHHHhc-------------CCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc
Confidence 77653221 1222222221111 235999999988732 345667777764
Q ss_pred --ccCCccEEEEecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Q psy17903 164 --ETKSTRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITCL 239 (355)
Q Consensus 164 --~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l 239 (355)
....+++|++||.+..+.+++++|+. .+.++.|+.++...++...+...+..++++.++.+++.+.| +.+.+.+.+
T Consensus 216 ~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 216 TSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp --CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred ccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHH
Confidence 23567888899999999999999997 78999999999999999999988888999999999999988 444444444
Q ss_pred HHH
Q psy17903 240 QSC 242 (355)
Q Consensus 240 ~~~ 242 (355)
+.+
T Consensus 296 ~~a 298 (357)
T 3d8b_A 296 REA 298 (357)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 34
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=2.9e-20 Score=173.08 Aligned_cols=213 Identities=20% Similarity=0.234 Sum_probs=148.6
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHh-----------cC-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccce
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-----------GA-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERI 99 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~-----------~~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~ 99 (355)
.+-.++-.+.+|+++.|.+++++.|.+.+. .| ..|. +|||||||||||++|+++|+++ +.++
T Consensus 169 ~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~-----~~~f 243 (434)
T 4b4t_M 169 AMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT-----NATF 243 (434)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEE
T ss_pred hcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh-----CCCE
Confidence 344455455689999999999999987752 12 2333 9999999999999999999998 4467
Q ss_pred eeecCCCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------H---HHHHHHH
Q psy17903 100 LELNASDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------A---AQAALRR 159 (355)
Q Consensus 100 ~~~~~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~---~~~~Ll~ 159 (355)
+.+++++... ...++..+.......+ -||||||+|.+.. . ....|+.
T Consensus 244 ~~v~~s~l~~~~vGese~~ir~lF~~A~~~aP-------------~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~ 310 (434)
T 4b4t_M 244 LKLAAPQLVQMYIGEGAKLVRDAFALAKEKAP-------------TIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLN 310 (434)
T ss_dssp EEEEGGGGCSSCSSHHHHHHHHHHHHHHHHCS-------------EEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHH
T ss_pred EEEehhhhhhcccchHHHHHHHHHHHHHhcCC-------------eEEeecchhhhhhccCCCCCCCchHHHHHHHHHHH
Confidence 7777765321 2334444443333221 2999999997721 1 2345666
Q ss_pred Hhhhc--cCCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHH
Q psy17903 160 TMEKE--TKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMR 233 (355)
Q Consensus 160 ~le~~--~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r 233 (355)
.|+.. ..++++|++||.++.+++++.+ |+. .|+|+.|+.++..++++.++++....- +-.++.|++.+.| +.+
T Consensus 311 ~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~-dvdl~~lA~~t~G~sGA 389 (434)
T 4b4t_M 311 QLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDD-DINWQELARSTDEFNGA 389 (434)
T ss_dssp HHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCS-CCCHHHHHHHCSSCCHH
T ss_pred HhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCC-cCCHHHHHHhCCCCCHH
Confidence 66643 3457788899999999999988 554 799999999999999998887754321 1236778888866 444
Q ss_pred HHHHHHHHHHHhh---CCCCCCHHHHHHHhCCCC
Q psy17903 234 RAITCLQSCARLK---GGEGIVNEDVLEVTGVIP 264 (355)
Q Consensus 234 ~~~~~l~~~~~~~---~~~~It~~~v~~~~~~~~ 264 (355)
.+.+.+..++..+ +...|+.+|+.+++....
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 4445444444333 567899999998886553
No 35
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=4.9e-20 Score=171.66 Aligned_cols=209 Identities=19% Similarity=0.211 Sum_probs=146.0
Q ss_pred ccccccCCCCCCcccccHHHHHHHHHHHhc-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCcccccee
Q psy17903 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------A-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERIL 100 (355)
Q Consensus 34 ~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~ 100 (355)
+..++-...+|+++.|.+++++.|.+.+.- | ..|. +|||||||||||++|+++|+++ +.+++
T Consensus 170 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~-----~~~~~ 244 (437)
T 4b4t_L 170 MTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI-----GANFI 244 (437)
T ss_dssp CEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH-----TCEEE
T ss_pred eeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEE
Confidence 334443445899999999999999887631 2 2333 9999999999999999999998 44677
Q ss_pred eecCCCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHH
Q psy17903 101 ELNASDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRT 160 (355)
Q Consensus 101 ~~~~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~ 160 (355)
.+++++..+ ...++..+....... | -||||||+|.+.. ...+.|+..
T Consensus 245 ~v~~s~l~sk~~Gese~~ir~~F~~A~~~~---------P----~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~ 311 (437)
T 4b4t_L 245 FSPASGIVDKYIGESARIIREMFAYAKEHE---------P----CIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQ 311 (437)
T ss_dssp EEEGGGTCCSSSSHHHHHHHHHHHHHHHSC---------S----EEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHH
T ss_pred EEehhhhccccchHHHHHHHHHHHHHHhcC---------C----ceeeeecccccccccccCCCCcchHHHHHHHHHHHH
Confidence 777765322 123333333322221 2 2999999998842 124567777
Q ss_pred hhhc--cCCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Q psy17903 161 MEKE--TKSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRR 234 (355)
Q Consensus 161 le~~--~~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~ 234 (355)
|+.. ..++++|++||.++.+++++.++++ .|+|+.|+.++...+++.++.+.... ++..+..+++.+.| +.+.
T Consensus 312 lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGAD 390 (437)
T 4b4t_L 312 MDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGAD 390 (437)
T ss_dssp HHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHH
T ss_pred hhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHH
Confidence 7643 3467889999999999999988754 79999999999999999888765432 22236788888876 4444
Q ss_pred HHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 235 AITCLQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 235 ~~~~l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
+.+.+..++..+ +...|+.+|+.+++.
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~ 420 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVR 420 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 444554444433 556799999987764
No 36
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.85 E-value=7.7e-21 Score=179.66 Aligned_cols=214 Identities=14% Similarity=0.184 Sum_probs=158.2
Q ss_pred cCCC-CCCccc-cc--HHHHHHHHHHHhcCC-CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHH
Q psy17903 39 YRPK-TIDDVI-EQ--QEVVSVLKKCLSGAD-LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVI 113 (355)
Q Consensus 39 ~~p~-~~~~~v-g~--~~~~~~l~~~l~~~~-~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i 113 (355)
..|. +|++++ |+ ......+..++.... .++++|+||+|+|||++++++++.+........++.+++... ...+
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~--~~~~ 175 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF--LNDL 175 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH--HHHH
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH--HHHH
Confidence 4454 788888 53 344566666666543 455999999999999999999998854333445667666542 1111
Q ss_pred HHHHH-----HHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHhhhc-cCCccEEEEecCC-cc---cc
Q psy17903 114 RDKVK-----TFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKE-TKSTRFCLICNYV-SC---II 181 (355)
Q Consensus 114 ~~~i~-----~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~-~~~~~~Il~~~~~-~~---l~ 181 (355)
...+. .+.... . . ...+|||||++.+.. ..++.|+..++.. .....+|++++.+ .. +.
T Consensus 176 ~~~~~~~~~~~~~~~~-~-----~----~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~ 245 (440)
T 2z4s_A 176 VDSMKEGKLNEFREKY-R-----K----KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQ 245 (440)
T ss_dssp HHHHHTTCHHHHHHHH-T-----T----TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCC
T ss_pred HHHHHcccHHHHHHHh-c-----C----CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHH
Confidence 11111 111110 0 0 224999999999986 6788888888753 3345667777753 32 67
Q ss_pred ccccCCe---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhh--CCCCCCHHHH
Q psy17903 182 QPLTSRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLK--GGEGIVNEDV 256 (355)
Q Consensus 182 ~~l~sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~--~~~~It~~~v 256 (355)
+++.+|| ..+.|.+|+.++...+++..+...++.+++++++.|+..++||+|.+.+.|+.+..++ .+..||.+++
T Consensus 246 ~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It~~~~ 325 (440)
T 2z4s_A 246 DRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEA 325 (440)
T ss_dssp HHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCCHHHH
T ss_pred HHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 8999998 5899999999999999999999999999999999999999999999999999988776 4567999999
Q ss_pred HHHhCCCC
Q psy17903 257 LEVTGVIP 264 (355)
Q Consensus 257 ~~~~~~~~ 264 (355)
.+++....
T Consensus 326 ~~~l~~~~ 333 (440)
T 2z4s_A 326 ILLLKDFI 333 (440)
T ss_dssp HHHTSTTT
T ss_pred HHHHHHHh
Confidence 99998765
No 37
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.85 E-value=2.3e-20 Score=173.63 Aligned_cols=280 Identities=15% Similarity=0.219 Sum_probs=180.6
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhc----CCCCeEEEECCCCCCHHHHHHHHHHHhcCCcc-ccceeeecCCC
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG----ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY-RERILELNASD 106 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~----~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~-~~~~~~~~~~~ 106 (355)
..+|..+|+| ++++|++..++.+.+++.. +....++|+||+|+|||++++.+++.+..... ...++.+++..
T Consensus 10 ~~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 10 REYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp GGGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred hhhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 3456677877 6789999999999998874 33345999999999999999999998743211 23455666432
Q ss_pred ccc----------------------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC----HHHHHHHHHH
Q psy17903 107 DRG----------------------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT----HAAQAALRRT 160 (355)
Q Consensus 107 ~~~----------------------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~----~~~~~~Ll~~ 160 (355)
... ...+...+...... .+ ...+|||||++.+. .+....|++.
T Consensus 87 ~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~-------~~----~~~vlilDE~~~l~~~~~~~~l~~l~~~ 155 (386)
T 2qby_A 87 IDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD-------YG----SQVVIVLDEIDAFVKKYNDDILYKLSRI 155 (386)
T ss_dssp HCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT-------CC----SCEEEEEETHHHHHHSSCSTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc-------cC----CeEEEEEcChhhhhccCcCHHHHHHhhc
Confidence 111 11222222222211 01 24599999999885 3445666666
Q ss_pred hhh-ccCCccEEEEecCC---ccccccccCCe--eeEEecCCCHHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHcC---
Q psy17903 161 MEK-ETKSTRFCLICNYV---SCIIQPLTSRC--SKFRFKPLAENTMLTRLQYICEQE--SVMCDFKALETLVETSG--- 229 (355)
Q Consensus 161 le~-~~~~~~~Il~~~~~---~~l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~l~~~~~--- 229 (355)
++. ....+.+|++++.. ..+.+.+.+|+ ..+.|++++.+++.+++...+... ...+++++++.+++.++
T Consensus 156 ~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 235 (386)
T 2qby_A 156 NSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREH 235 (386)
T ss_dssp HHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTT
T ss_pred hhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhc
Confidence 654 24467788888866 45677888888 689999999999999999988753 36789999999999988
Q ss_pred CCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCCCChHHHHHHHhcCCHHHHHHHHHHHH---HcC---CCHHHHHHH
Q psy17903 230 GDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGVIPNPWIEKLLKVDSFQVLEKYIEDLI---LEA---YSATQLFDQ 300 (355)
Q Consensus 230 g~~r~~~~~l~~~~~~~---~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~---~~g---~~~~~i~~~ 300 (355)
||+|.+++.++.+...+ +...|+.+++.+++.........+.+.. .......++..+. ..| ++..+++..
T Consensus 236 G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~~~~~~~~-l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~ 314 (386)
T 2qby_A 236 GDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDRVRDIILT-LPFHSKLVLMAVVSISSEENVVSTTGAVYET 314 (386)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHC-----CEEHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhchHHHHHHc-CCHHHHHHHHHHHHHHhcCCCceeHHHHHHH
Confidence 99999999998887655 4468999999988765543333333332 2222233333332 123 223555555
Q ss_pred HHHHHHhc--CCCCHHHHHHHHHHHHHH
Q psy17903 301 FHDIVMSA--SSLSDKQKALILEKLAEC 326 (355)
Q Consensus 301 l~~~~~~~--~~~~~~~~~~i~~~l~~~ 326 (355)
+...+... ...+.......++.|...
T Consensus 315 ~~~~~~~~g~~~~~~~~~~~~l~~L~~~ 342 (386)
T 2qby_A 315 YLNICKKLGVEAVTQRRVSDIINELDMV 342 (386)
T ss_dssp HHHHHHHHTCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHhC
Confidence 54444322 223445555666665544
No 38
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.1e-19 Score=168.82 Aligned_cols=211 Identities=17% Similarity=0.184 Sum_probs=145.6
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHh-----------cC-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccc
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLS-----------GA-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRER 98 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~-----------~~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~ 98 (355)
..+-.++-...+|+++.|.+++++.|++.+. -| ..|. +|||||||||||++|+++|+++ +.+
T Consensus 196 ~~m~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~-----~~~ 270 (467)
T 4b4t_H 196 TMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT-----DAT 270 (467)
T ss_dssp CCCEEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH-----TCE
T ss_pred ceeeecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc-----CCC
Confidence 3444555444689999999999999988762 12 3333 9999999999999999999998 446
Q ss_pred eeeecCCCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHH
Q psy17903 99 ILELNASDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALR 158 (355)
Q Consensus 99 ~~~~~~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll 158 (355)
++.+++++..+ ...++..+....... | -||||||+|.+.. .....|+
T Consensus 271 fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~a---------P----~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL 337 (467)
T 4b4t_H 271 FIRVIGSELVQKYVGEGARMVRELFEMARTKK---------A----CIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELI 337 (467)
T ss_dssp EEEEEGGGGCCCSSSHHHHHHHHHHHHHHHTC---------S----EEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHH
T ss_pred eEEEEhHHhhcccCCHHHHHHHHHHHHHHhcC---------C----ceEeecccccccccccCcCCCccHHHHHHHHHHH
Confidence 77777665322 233444444333321 1 2999999998842 1234455
Q ss_pred HHhhh--ccCCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Q psy17903 159 RTMEK--ETKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DM 232 (355)
Q Consensus 159 ~~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~ 232 (355)
..|+. ....+++|++||.++.+++++.+ |+. .|+|+.|+.++..++++.+++...+.- +-.++.|++.+.| +.
T Consensus 338 ~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~-dvdl~~LA~~T~GfSG 416 (467)
T 4b4t_H 338 TQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVER-GIRWELISRLCPNSTG 416 (467)
T ss_dssp HHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCS-SCCHHHHHHHCCSCCH
T ss_pred HHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCC-CCCHHHHHHHCCCCCH
Confidence 55553 23467788999999999999987 654 899999999999999998886544321 1236778888876 33
Q ss_pred HHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 233 RRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 233 r~~~~~l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
+.+.+.+..++..+ +...|+.+|+.+++.
T Consensus 417 ADI~~l~~eAa~~Air~~~~~it~~Df~~Al~ 448 (467)
T 4b4t_H 417 AELRSVCTEAGMFAIRARRKVATEKDFLKAVD 448 (467)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 44444444443333 566789999887653
No 39
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=4.2e-20 Score=166.91 Aligned_cols=206 Identities=19% Similarity=0.231 Sum_probs=146.7
Q ss_pred CcccccHHHHHHHHHHHhc--------------CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc-
Q psy17903 45 DDVIEQQEVVSVLKKCLSG--------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG- 109 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~--------------~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~- 109 (355)
+.++|++.+++.+...+.. ....+++|+||||||||++|+++++.+. ..++.++++....
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~-----~~~~~i~~~~~~~~ 89 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN-----APFIKVEATKFTEV 89 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT-----CCEEEEEGGGGSSC
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEEcchhcccC
Confidence 3589999999999887754 2234599999999999999999999983 3566666654321
Q ss_pred -------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHH------------HHHHHHHhhhc------
Q psy17903 110 -------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA------------QAALRRTMEKE------ 164 (355)
Q Consensus 110 -------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~------------~~~Ll~~le~~------ 164 (355)
...+...+..... ..... ....+|||||+|.+..+. ++.|+..++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~ 161 (310)
T 1ofh_A 90 GYVGKEVDSIIRDLTDSAGG-AIDAV-------EQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH 161 (310)
T ss_dssp CSGGGSTTHHHHHHHHTTTT-CHHHH-------HHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETT
T ss_pred CccCccHHHHHHHHHHHhhH-HHhhc-------cCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEeccc
Confidence 1122222211000 00000 013499999999997654 78899999863
Q ss_pred ----cCCccEEEEe----cCCccccccccCCee-eEEecCCCHHHHHHHHHH-----------HHHHcC--CCCCHHHHH
Q psy17903 165 ----TKSTRFCLIC----NYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQY-----------ICEQES--VMCDFKALE 222 (355)
Q Consensus 165 ----~~~~~~Il~~----~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~-----------~~~~~~--~~~~~~~~~ 222 (355)
...++||+++ +.+..+.+++.+||. .+.|++|+.+++..+++. .+...+ +.+++++++
T Consensus 162 ~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 241 (310)
T 1ofh_A 162 GMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVK 241 (310)
T ss_dssp EEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHH
T ss_pred ccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHH
Confidence 2356777774 355678899999996 699999999999999883 233344 368999999
Q ss_pred HHHHHc--------CCCHHHHHHHHHHHHHh-----h-C-CC--CCCHHHHHHHhCCC
Q psy17903 223 TLVETS--------GGDMRRAITCLQSCARL-----K-G-GE--GIVNEDVLEVTGVI 263 (355)
Q Consensus 223 ~l~~~~--------~g~~r~~~~~l~~~~~~-----~-~-~~--~It~~~v~~~~~~~ 263 (355)
.|++.+ .||+|.+.+.++.+... . . +. .||.+++.+++...
T Consensus 242 ~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 242 KIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 999988 79999999999987621 1 1 22 49999999988755
No 40
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.84 E-value=1.6e-19 Score=163.84 Aligned_cols=189 Identities=14% Similarity=0.149 Sum_probs=139.8
Q ss_pred cccCCCCCCcccccHHHHHHHHHHHh----------cCC-C-CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC
Q psy17903 37 EKYRPKTIDDVIEQQEVVSVLKKCLS----------GAD-L-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (355)
Q Consensus 37 ~k~~p~~~~~~vg~~~~~~~l~~~l~----------~~~-~-~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 104 (355)
.++.+.+|++++|++.+++.|.+.+. ++. . .++|||||||||||++|+++++.+.+ ..++.+++
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~----~~~~~i~~ 79 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN----STFFSISS 79 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS----CEEEEEEC
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC----CcEEEEEh
Confidence 45567789999999999999998773 112 2 24999999999999999999999732 24566666
Q ss_pred CCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhhh---c
Q psy17903 105 SDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEK---E 164 (355)
Q Consensus 105 ~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~---~ 164 (355)
++... ...++..+...... ...+|||||+|.+.. ...+.|+..++. .
T Consensus 80 ~~l~~~~~g~~~~~~~~lf~~a~~~-------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~ 146 (322)
T 1xwi_A 80 SDLVSKWLGESEKLVKNLFQLAREN-------------KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 146 (322)
T ss_dssp CSSCCSSCCSCHHHHHHHHHHHHHT-------------SSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSC
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHhc-------------CCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccccc
Confidence 54321 22333333322211 234999999999832 345667777764 3
Q ss_pred cCCccEEEEecCCccccccccCCe-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHH
Q psy17903 165 TKSTRFCLICNYVSCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGD-MRRAITCLQSC 242 (355)
Q Consensus 165 ~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~~~~~l~~~ 242 (355)
...+++|++||.++.+.+++++|+ ..+.++.|+.++...+++.++...+..+++..++.|++.+.|. .+.+.+.++.+
T Consensus 147 ~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A 226 (322)
T 1xwi_A 147 NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDA 226 (322)
T ss_dssp CTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 456788889999999999999999 4899999999999999999998887788999999999999875 44444444443
No 41
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=8.6e-20 Score=163.07 Aligned_cols=206 Identities=15% Similarity=0.183 Sum_probs=144.6
Q ss_pred cccCCCCCCcccccHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeec
Q psy17903 37 EKYRPKTIDDVIEQQEVVSVLKKCLSG-------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (355)
Q Consensus 37 ~k~~p~~~~~~vg~~~~~~~l~~~l~~-------------~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 103 (355)
....+.+|++++|++.+++.|.+.+.. ....++||+||||||||++|+++++.+ +..++.++
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~-----~~~~~~v~ 83 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET-----NATFIRVV 83 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT-----TCEEEEEE
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEe
Confidence 344456899999999999999888743 233449999999999999999999997 33556666
Q ss_pred CCCccc--h----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCC-----------CHHHHHHHHHHhhh---
Q psy17903 104 ASDDRG--I----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM-----------THAAQAALRRTMEK--- 163 (355)
Q Consensus 104 ~~~~~~--~----~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l-----------~~~~~~~Ll~~le~--- 163 (355)
+.+... . ..+...+...... ...+|||||+|.+ ....+..|..+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~ 150 (285)
T 3h4m_A 84 GSELVKKFIGEGASLVKDIFKLAKEK-------------APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG 150 (285)
T ss_dssp GGGGCCCSTTHHHHHHHHHHHHHHHT-------------CSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT
T ss_pred hHHHHHhccchHHHHHHHHHHHHHHc-------------CCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC
Confidence 544211 1 1222222222211 2249999999987 33455566555543
Q ss_pred --ccCCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Q psy17903 164 --ETKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAIT 237 (355)
Q Consensus 164 --~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~ 237 (355)
....+++|+++|.+..+.+++.+ |+. .+.|++|+.++..++++..+...+.. .+..+..++..+.| +.+.+.+
T Consensus 151 ~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~ 229 (285)
T 3h4m_A 151 FDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKA 229 (285)
T ss_dssp TCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHH
T ss_pred CCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHH
Confidence 33467888899999989999988 775 79999999999999999988765543 23346777777766 5556666
Q ss_pred HHHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 238 CLQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 238 ~l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
.++.+...+ +...|+.+++.+++.
T Consensus 230 l~~~a~~~a~~~~~~~I~~~d~~~al~ 256 (285)
T 3h4m_A 230 ICTEAGMNAIRELRDYVTMDDFRKAVE 256 (285)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcCCHHHHHHHHH
Confidence 665554443 556799999988764
No 42
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.84 E-value=2.9e-19 Score=157.50 Aligned_cols=203 Identities=15% Similarity=0.081 Sum_probs=136.8
Q ss_pred CCCCCcccccHHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCLSG------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l~~------------~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~ 108 (355)
+.+|++++|++.+++.+.+++.. ....++||+||||+|||++|+++++.+. .+++.+++.+..
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~-----~~~~~~~~~~~~ 76 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQ-----VPFLAMAGAEFV 76 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHT-----CCEEEEETTTTS
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CCEEEechHHHH
Confidence 35799999999999888876631 1223499999999999999999999983 356677766532
Q ss_pred c------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH------------HHH---HHHHHHhhh--cc
Q psy17903 109 G------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH------------AAQ---AALRRTMEK--ET 165 (355)
Q Consensus 109 ~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------------~~~---~~Ll~~le~--~~ 165 (355)
. ...+...+...... ...+|||||+|.+.. ..+ +.|+..++. ..
T Consensus 77 ~~~~~~~~~~~~~~~~~a~~~-------------~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 143 (262)
T 2qz4_A 77 EVIGGLGAARVRSLFKEARAR-------------APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT 143 (262)
T ss_dssp SSSTTHHHHHHHHHHHHHHHT-------------CSEEEEEECC-------------------CHHHHHHHHHHHTCCTT
T ss_pred hhccChhHHHHHHHHHHHHhc-------------CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC
Confidence 1 12233333322211 224999999999842 222 334444443 23
Q ss_pred CCccEEEEecCCccccccccC--Ce-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCC-HHHHHHHHH
Q psy17903 166 KSTRFCLICNYVSCIIQPLTS--RC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKA-LETLVETSGGD-MRRAITCLQ 240 (355)
Q Consensus 166 ~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~g~-~r~~~~~l~ 240 (355)
..+++|+++|.+..+.+++.+ |+ ..+.|++|+.++..++++..+...+...+.+. ...++..+.|. .+.+.+.++
T Consensus 144 ~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~ 223 (262)
T 2qz4_A 144 DHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICN 223 (262)
T ss_dssp CCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence 467888889988888899988 88 48999999999999999999998888777664 57788888775 457777777
Q ss_pred HHHHhh---CCCCCCHHHHHHHhC
Q psy17903 241 SCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 241 ~~~~~~---~~~~It~~~v~~~~~ 261 (355)
.++..+ +...|+.+++.+++.
T Consensus 224 ~a~~~a~~~~~~~i~~~d~~~a~~ 247 (262)
T 2qz4_A 224 EAALHAAREGHTSVHTLNFEYAVE 247 (262)
T ss_dssp HHHTC--------CCBCCHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHH
Confidence 666554 245677777766553
No 43
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.83 E-value=3.3e-19 Score=165.87 Aligned_cols=210 Identities=20% Similarity=0.245 Sum_probs=145.1
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhc-----------C-CCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccce
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------A-DLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERI 99 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~ 99 (355)
.+..++-...+|+++.|.+++++.|.+.+.- | ..|. +|||||||||||++|+++|+++ +.++
T Consensus 160 ~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~-----~~~~ 234 (428)
T 4b4t_K 160 VMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST-----KAAF 234 (428)
T ss_dssp CCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH-----TCEE
T ss_pred hccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh-----CCCe
Confidence 3344443445899999999999999887631 2 2333 9999999999999999999998 4567
Q ss_pred eeecCCCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHH
Q psy17903 100 LELNASDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRR 159 (355)
Q Consensus 100 ~~~~~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~ 159 (355)
+.+++++..+ ...++..+....... | -+|||||+|.+.. ...+.|+.
T Consensus 235 ~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~a---------P----~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~ 301 (428)
T 4b4t_K 235 IRVNGSEFVHKYLGEGPRMVRDVFRLARENA---------P----SIIFIDEVDSIATKRFDAQTGSDREVQRILIELLT 301 (428)
T ss_dssp EEEEGGGTCCSSCSHHHHHHHHHHHHHHHTC---------S----EEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHH
T ss_pred EEEecchhhccccchhHHHHHHHHHHHHHcC---------C----CeeechhhhhhhccccCCCCCCChHHHHHHHHHHH
Confidence 7777665321 234454444433321 1 2999999986621 23466777
Q ss_pred Hhhh--ccCCccEEEEecCCccccccccC--Cee-eEEec-CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Q psy17903 160 TMEK--ETKSTRFCLICNYVSCIIQPLTS--RCS-KFRFK-PLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DM 232 (355)
Q Consensus 160 ~le~--~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~ 232 (355)
.|+. ...++++|++||.++.+++++.+ |+. .|+|+ .|+.++...+++.++++..+. ++..++.++..+.| +.
T Consensus 302 ~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sg 380 (428)
T 4b4t_K 302 QMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSG 380 (428)
T ss_dssp HHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCH
T ss_pred HhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCH
Confidence 7764 34567889999999999999988 444 68895 789999999999888765432 12237888888866 34
Q ss_pred HHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 233 RRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 233 r~~~~~l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
+.+.+.+..++..+ +...|+.+|+.+++.
T Consensus 381 adi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 381 AVIAAIMQEAGLRAVRKNRYVILQSDLEEAYA 412 (428)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 44444454444433 556799999987753
No 44
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.83 E-value=2.2e-19 Score=170.00 Aligned_cols=194 Identities=14% Similarity=0.155 Sum_probs=143.7
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHh----------c-CCC-CeEEEECCCCCCHHHHHHHHHHHhcCCcccccee
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLS----------G-ADL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERIL 100 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~----------~-~~~-~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~ 100 (355)
..+..++.+.+|++++|++.+++.|.+.+. . ... .++||+||||||||++|+++++.+. ..+++
T Consensus 122 ~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~----~~~~~ 197 (444)
T 2zan_A 122 GAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN----NSTFF 197 (444)
T ss_dssp --CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC----SSEEE
T ss_pred cceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC----CCCEE
Confidence 455667888899999999999999998872 1 122 3499999999999999999999973 23566
Q ss_pred eecCCCccch------HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC-----------HHHHHHHHHHhhh
Q psy17903 101 ELNASDDRGI------QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT-----------HAAQAALRRTMEK 163 (355)
Q Consensus 101 ~~~~~~~~~~------~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~~~~~Ll~~le~ 163 (355)
.+++++.... ..++..+...... ...||||||+|.+. ...++.|+..++.
T Consensus 198 ~v~~~~l~~~~~g~~~~~~~~~f~~a~~~-------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 264 (444)
T 2zan_A 198 SISSSDLVSKWLGESEKLVKNLFQLAREN-------------KPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 264 (444)
T ss_dssp EECCC---------CCCTHHHHHHHHHHS-------------CSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTC
T ss_pred EEeHHHHHhhhcchHHHHHHHHHHHHHHc-------------CCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhC
Confidence 6776543211 1233333222211 23499999999983 2456778877765
Q ss_pred ---ccCCccEEEEecCCccccccccCCee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Q psy17903 164 ---ETKSTRFCLICNYVSCIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAITC 238 (355)
Q Consensus 164 ---~~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~ 238 (355)
....++||++||.++.+.+++++||. .+.++.|+.++...+++.++...+..+++..++.|+..+.| +.+.+.+.
T Consensus 265 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 265 VGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp SSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 35678889999999999999999995 88999999999999999999887777899999999999988 55555555
Q ss_pred HHHHH
Q psy17903 239 LQSCA 243 (355)
Q Consensus 239 l~~~~ 243 (355)
++.++
T Consensus 345 ~~~a~ 349 (444)
T 2zan_A 345 VRDAL 349 (444)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
No 45
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.83 E-value=4e-20 Score=168.38 Aligned_cols=202 Identities=16% Similarity=0.200 Sum_probs=144.4
Q ss_pred CCCccc-c--cHHHHHHHHHHHhcCC--CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHH
Q psy17903 43 TIDDVI-E--QQEVVSVLKKCLSGAD--LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV 117 (355)
Q Consensus 43 ~~~~~v-g--~~~~~~~l~~~l~~~~--~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 117 (355)
+|++++ | +......+..++.... .++++|+||+|+|||++++++++.+... ...++.+++.+. ...+...+
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~--~~~~~~i~~~~~--~~~~~~~~ 84 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR--GYRVIYSSADDF--AQAMVEHL 84 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT--TCCEEEEEHHHH--HHHHHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC--CCEEEEEEHHHH--HHHHHHHH
Confidence 688887 4 4555667777776643 3459999999999999999999988543 335667766442 11111111
Q ss_pred H-----HHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHHHhhhc-cCCccEEEEecCC-c---ccccccc
Q psy17903 118 K-----TFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRRTMEKE-TKSTRFCLICNYV-S---CIIQPLT 185 (355)
Q Consensus 118 ~-----~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~~le~~-~~~~~~Il~~~~~-~---~l~~~l~ 185 (355)
. .+.... . ...+|||||++.+.. ..++.++..++.. .....+|++++.. . .+.+++.
T Consensus 85 ~~~~~~~~~~~~-~----------~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~ 153 (324)
T 1l8q_A 85 KKGTINEFRNMY-K----------SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLV 153 (324)
T ss_dssp HHTCHHHHHHHH-H----------TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHH
T ss_pred HcCcHHHHHHHh-c----------CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhh
Confidence 1 111100 0 124999999999986 6677787777643 2334566666543 3 4778999
Q ss_pred CCe---eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-------hCCCCC-CHH
Q psy17903 186 SRC---SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARL-------KGGEGI-VNE 254 (355)
Q Consensus 186 sr~---~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~-------~~~~~I-t~~ 254 (355)
+|+ ..++|++ +.++...+++..+...++.+++++++.++..+ ||+|.+.+.++.+..+ .+...| |.+
T Consensus 154 sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~~~~~l~~~~~~~i~t~~ 231 (324)
T 1l8q_A 154 SRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFEGLERKERKERDKLM 231 (324)
T ss_dssp HHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred hcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHcCHHHhccccccCCCCHH
Confidence 998 6899999 99999999999999999999999999999999 9999999999998876 112245 666
Q ss_pred HHHHHhC
Q psy17903 255 DVLEVTG 261 (355)
Q Consensus 255 ~v~~~~~ 261 (355)
++.+++.
T Consensus 232 ~i~~~~~ 238 (324)
T 1l8q_A 232 QIVEFVA 238 (324)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
No 46
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.83 E-value=3.3e-20 Score=169.43 Aligned_cols=219 Identities=15% Similarity=0.122 Sum_probs=155.2
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHH
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQV 112 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 112 (355)
.+|.++++|..+++++|+++++..+...+..+ .+++|+||||+|||++|+++++.+.. .+..+++........
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~~-----~~~~i~~~~~~~~~~ 87 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMDL-----DFHRIQFTPDLLPSD 87 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTTC-----CEEEEECCTTCCHHH
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhCC-----CeEEEecCCCCChhh
Confidence 36899999999999999999999998888765 37999999999999999999998843 345555532222111
Q ss_pred HHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCccEEEEecCCc---
Q psy17903 113 IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-----------TKSTRFCLICNYVS--- 178 (355)
Q Consensus 113 i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~~--- 178 (355)
+......-......... .+.. ...++||||++.++++.++.|+..+++. +..+++|.++|...
T Consensus 88 l~g~~~~~~~~~~~~~~-~g~l--~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~ 164 (331)
T 2r44_A 88 LIGTMIYNQHKGNFEVK-KGPV--FSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEG 164 (331)
T ss_dssp HHEEEEEETTTTEEEEE-ECTT--CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSC
T ss_pred cCCceeecCCCCceEec-cCcc--cccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccC
Confidence 11000000000000000 0000 1249999999999999999999999864 33455665666332
Q ss_pred --cccccccCCee-eEEecCCCHHHHHHHHHHHHHH----------------------cCCCCCHHHHHHHHHHc-----
Q psy17903 179 --CIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQ----------------------ESVMCDFKALETLVETS----- 228 (355)
Q Consensus 179 --~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~----------------------~~~~~~~~~~~~l~~~~----- 228 (355)
.+.+++.+||. .+.+.+|+.++..++++..+.. .++.+++++++++++.+
T Consensus 165 ~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~ 244 (331)
T 2r44_A 165 TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRF 244 (331)
T ss_dssp CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHS
T ss_pred cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhc
Confidence 37899999998 5999999999999999988754 26778999999987654
Q ss_pred CC---------------CHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 229 GG---------------DMRRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 229 ~g---------------~~r~~~~~l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
.+ ++|.+.+.++.+..++ +...|+.+++.+++.
T Consensus 245 ~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~ 295 (331)
T 2r44_A 245 PAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAY 295 (331)
T ss_dssp GGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred cccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 22 6999988887665443 556799999988653
No 47
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.82 E-value=1e-19 Score=173.42 Aligned_cols=196 Identities=16% Similarity=0.201 Sum_probs=143.3
Q ss_pred CCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCc-----cccceeeecC
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELNA 104 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~ 104 (355)
.....|.++|+|..|++++|++..+..+.+.+.....+++||+||||||||++|+++++.+.... .+..++.+++
T Consensus 165 ~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 34678999999999999999999999999999887777899999999999999999999985422 2345666666
Q ss_pred CCc-cc--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCc---
Q psy17903 105 SDD-RG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS--- 178 (355)
Q Consensus 105 ~~~-~~--~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~--- 178 (355)
... .+ ...+...+...... +..+|||| ...+.++.|+..|++ ..+++|++||...
T Consensus 245 ~~~~~g~~e~~~~~~~~~~~~~-------------~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~e~~~ 305 (468)
T 3pxg_A 245 GTKYRGEFEDRLKKVMDEIRQA-------------GNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRK 305 (468)
T ss_dssp --------CTTHHHHHHHHHTC-------------CCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHH
T ss_pred CccccchHHHHHHHHHHHHHhc-------------CCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHHHHHH
Confidence 511 11 12233333333211 22399999 455677888888884 4678888888765
Q ss_pred --cccccccCCeeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC------HHHHHHHHHHHHH
Q psy17903 179 --CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGGD------MRRAITCLQSCAR 244 (355)
Q Consensus 179 --~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~------~r~~~~~l~~~~~ 244 (355)
.+.+++.+||..+.|++|+.++...+++.++.. .++.++++++..++..+.+. ++++++.++.++.
T Consensus 306 ~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~ 383 (468)
T 3pxg_A 306 YIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (468)
T ss_dssp HHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHH
Confidence 478999999999999999999999999988766 78899999999998876433 5678888877654
No 48
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.82 E-value=6.1e-19 Score=158.09 Aligned_cols=198 Identities=8% Similarity=0.075 Sum_probs=138.2
Q ss_pred ccccHHHHHHHHHH----HhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCC-----ccccceeeecCCCccchHHHH-HH
Q psy17903 47 VIEQQEVVSVLKKC----LSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-----MYRERILELNASDDRGIQVIR-DK 116 (355)
Q Consensus 47 ~vg~~~~~~~l~~~----l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~i~-~~ 116 (355)
+.|+++.+..|... +..+..++++|+||||||||++++.+++++... ...+.++++||........+. ..
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I 101 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKI 101 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHH
Confidence 77888777766544 556777779999999999999999999998532 124578899987754433222 22
Q ss_pred HHHHHHhhccC----------CCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc---cCCccEEEEecCCcc----
Q psy17903 117 VKTFAQQTASG----------FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE---TKSTRFCLICNYVSC---- 179 (355)
Q Consensus 117 i~~~~~~~~~~----------~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~---~~~~~~Il~~~~~~~---- 179 (355)
..++....... ............||+|||+|.+. .|+.|+.+++.+ ...+.+|+++|..+.
T Consensus 102 ~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~ 179 (318)
T 3te6_A 102 WFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHNVTIREQ 179 (318)
T ss_dssp HHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHH
T ss_pred HHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCcccchhh
Confidence 22221000000 00000000134599999999998 667777777642 345678888887542
Q ss_pred ccccccCCe--eeEEecCCCHHHHHHHHHHHHHHcCC-----------------------------------CCCHHHHH
Q psy17903 180 IIQPLTSRC--SKFRFKPLAENTMLTRLQYICEQESV-----------------------------------MCDFKALE 222 (355)
Q Consensus 180 l~~~l~sr~--~~i~~~~~~~~~~~~~l~~~~~~~~~-----------------------------------~~~~~~~~ 222 (355)
+.++++||+ ..+.|+|++.+|+.+++++++....- .+++++++
T Consensus 180 L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~ 259 (318)
T 3te6_A 180 INIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQ 259 (318)
T ss_dssp HHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTEEEECEECCHHHHH
T ss_pred cchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccCHHHHH
Confidence 557788887 57999999999999999999986321 36999999
Q ss_pred HHHH---HcCCCHHHHHHHHHHHHHhh
Q psy17903 223 TLVE---TSGGDMRRAITCLQSCARLK 246 (355)
Q Consensus 223 ~l~~---~~~g~~r~~~~~l~~~~~~~ 246 (355)
.+++ ...||+|++++.|+.+...+
T Consensus 260 ~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 260 LIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 9998 46899999999999988765
No 49
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.81 E-value=5.7e-19 Score=158.89 Aligned_cols=211 Identities=15% Similarity=0.153 Sum_probs=144.6
Q ss_pred CcccccHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHH
Q psy17903 45 DDVIEQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ 122 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 122 (355)
++++|++..+..+.+.+.. ....++||+||+|||||++|+++++..... ..+++.+||+.... ..+...+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~--~~~~v~v~~~~~~~-~l~~~~lfg~~~ 78 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS--DRPLVTLNCAALNE-SLLESELFGHEK 78 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS--SSCCCEEECSSCCH-HHHHHHHTCCCS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc--CCCeEEEeCCCCCh-HHHHHHhcCccc
Confidence 4689999988888877754 223349999999999999999999986432 34678888876422 111111100000
Q ss_pred hhccCCCCCCCCC----CCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------ccc
Q psy17903 123 QTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCI 180 (355)
Q Consensus 123 ~~~~~~~~~~~~~----~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~l 180 (355)
....+... .... ++..+|||||++.++.+.|..|++.+++.. .++++|++||.. ..+
T Consensus 79 g~~tg~~~-~~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~f 157 (304)
T 1ojl_A 79 GAFTGADK-RREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRF 157 (304)
T ss_dssp SCCC---C-CCCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSS
T ss_pred cccCchhh-hhcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCc
Confidence 00000000 0000 234599999999999999999999998753 457899999864 234
Q ss_pred cccccCCee--eEEecCCC--HHHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCC
Q psy17903 181 IQPLTSRCS--KFRFKPLA--ENTMLTRLQYICE----QES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGG 248 (355)
Q Consensus 181 ~~~l~sr~~--~i~~~~~~--~~~~~~~l~~~~~----~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~~ 248 (355)
.+.|..|+. .++++|+. .+++..++...+. ..+ ..+++++++.|..++ +||+|.+.+.++.+...+.+
T Consensus 158 r~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~~ 237 (304)
T 1ojl_A 158 RQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTG 237 (304)
T ss_dssp CHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHhCCC
Confidence 567777864 56677777 4666666555443 333 568999999999886 99999999999999888777
Q ss_pred CCCCHHHHHHH
Q psy17903 249 EGIVNEDVLEV 259 (355)
Q Consensus 249 ~~It~~~v~~~ 259 (355)
..|+.+++...
T Consensus 238 ~~i~~~~l~~~ 248 (304)
T 1ojl_A 238 EYISERELPLA 248 (304)
T ss_dssp SSBCGGGSCGG
T ss_pred CcccHHhhhhh
Confidence 78888877543
No 50
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.81 E-value=1.1e-18 Score=164.90 Aligned_cols=207 Identities=22% Similarity=0.232 Sum_probs=148.2
Q ss_pred cccc-cCCCCCCcccccHHHHHHHHHHHhc-----------CCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceee
Q psy17903 35 WVEK-YRPKTIDDVIEQQEVVSVLKKCLSG-----------ADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILE 101 (355)
Q Consensus 35 ~~~k-~~p~~~~~~vg~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~ 101 (355)
|.+. ..+.+|++++|++.++..+.+.+.. ...+ +++|+||||||||++|++++..+ +.+++.
T Consensus 5 ~~~~~~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~-----~~~f~~ 79 (476)
T 2ce7_A 5 YKPSGNKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA-----NVPFFH 79 (476)
T ss_dssp CCCCCSCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH-----TCCEEE
T ss_pred eccCCCCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCeee
Confidence 4444 3445899999999999888876532 2233 49999999999999999999987 345667
Q ss_pred ecCCCcc------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHh
Q psy17903 102 LNASDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTM 161 (355)
Q Consensus 102 ~~~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~l 161 (355)
+++++.. +...++..+...... ...+|||||+|.+.. ..++.|+..|
T Consensus 80 is~~~~~~~~~g~~~~~~r~lf~~A~~~-------------~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~l 146 (476)
T 2ce7_A 80 ISGSDFVELFVGVGAARVRDLFAQAKAH-------------APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEM 146 (476)
T ss_dssp EEGGGTTTCCTTHHHHHHHHHHHHHHHT-------------CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcccHHHHHHHHHHHHhc-------------CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHH
Confidence 7665432 112333333332221 124999999998843 2356677777
Q ss_pred hh--ccCCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCCCH-HH
Q psy17903 162 EK--ETKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLVETSGGDM-RR 234 (355)
Q Consensus 162 e~--~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g~~-r~ 234 (355)
+. ....+++|.+||.++.+.+++.+ |+. .+.+++|+.++..++++..++... +.++ .+..++..++|+. +.
T Consensus 147 d~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgad 224 (476)
T 2ce7_A 147 DGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGAD 224 (476)
T ss_dssp HHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHH
T ss_pred hccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHH
Confidence 63 24567888899999889888876 554 789999999999999988876543 3332 3777899999987 78
Q ss_pred HHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 235 AITCLQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 235 ~~~~l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
+.+.++.++..+ +...|+.+++.+++.
T Consensus 225 L~~lv~~Aal~A~~~~~~~I~~~dl~~al~ 254 (476)
T 2ce7_A 225 LENLVNEAALLAAREGRDKITMKDFEEAID 254 (476)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCeecHHHHHHHHH
Confidence 888888776655 346799999987764
No 51
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.81 E-value=3.4e-19 Score=163.82 Aligned_cols=220 Identities=13% Similarity=0.086 Sum_probs=144.1
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC------Ccccc----------------
Q psy17903 40 RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG------DMYRE---------------- 97 (355)
Q Consensus 40 ~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~------~~~~~---------------- 97 (355)
+|.+|++++|++.++..+...+......++||+||||||||++|+++++.+.. ..++.
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTN 98 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccc
Confidence 56789999999998877666554444456999999999999999999998753 11100
Q ss_pred ------ceeeecCCCccchHHHHHH--HHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc-----
Q psy17903 98 ------RILELNASDDRGIQVIRDK--VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE----- 164 (355)
Q Consensus 98 ------~~~~~~~~~~~~~~~i~~~--i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~----- 164 (355)
.++.+.... ....+... +..................+...+|||||++.++.+.++.|+..+++.
T Consensus 99 ~~~~~~~~~~~~~~~--~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~ 176 (350)
T 1g8p_A 99 VIRKPTPVVDLPLGV--SEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVE 176 (350)
T ss_dssp EEEECCCEEEECTTC--CHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEEC
T ss_pred cccCCCcccccCCCc--chhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEE
Confidence 111111100 01111100 000000000000000000012469999999999999999999999864
Q ss_pred --------cCCccEEEEecCCc-cccccccCCeee-EEecCCC-HHHHHHHHHHH-------------------------
Q psy17903 165 --------TKSTRFCLICNYVS-CIIQPLTSRCSK-FRFKPLA-ENTMLTRLQYI------------------------- 208 (355)
Q Consensus 165 --------~~~~~~Il~~~~~~-~l~~~l~sr~~~-i~~~~~~-~~~~~~~l~~~------------------------- 208 (355)
+..+++|+++|... .+.+++.+||.. +.+++|+ .++..+++..+
T Consensus 177 ~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i 256 (350)
T 1g8p_A 177 RDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQI 256 (350)
T ss_dssp CTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHH
Confidence 23567787888644 788999999975 9999995 54444665442
Q ss_pred ----HHHcCCCCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 209 ----CEQESVMCDFKALETLVETSGG----DMRRAITCLQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 209 ----~~~~~~~~~~~~~~~l~~~~~g----~~r~~~~~l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
....++.+++++++.|++.+.+ ++|.+.+.++.+..++ +...|+.+++.+++.
T Consensus 257 ~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 257 LEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp HHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 2234568999999999988755 8999999998776554 445699999987664
No 52
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.81 E-value=1.9e-19 Score=159.19 Aligned_cols=212 Identities=17% Similarity=0.183 Sum_probs=139.1
Q ss_pred CCCcccccHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHH
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 120 (355)
+|++++|++..+..+.+.+.. ....+++|+||+|||||++|+++++.+... ..+++.++++... .+.+...+...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~--~~~~~~v~~~~~~-~~~~~~~l~g~ 80 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW--QGPFISLNCAALN-ENLLDSELFGH 80 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT--TSCEEEEEGGGSC-HHHHHHHHHCC
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc--CCCeEEEecCCCC-hhHHHHHhcCC
Confidence 689999999888877766643 222459999999999999999999987433 2467888887642 22221111100
Q ss_pred HHhhccCCC--CCCC-CCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCccEEEEecCC-------cc
Q psy17903 121 AQQTASGFN--QDGK-PCPPFKIVILDEADSMTHAAQAALRRTMEKE-----------TKSTRFCLICNYV-------SC 179 (355)
Q Consensus 121 ~~~~~~~~~--~~~~-~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~-------~~ 179 (355)
......+.. ..+. ..++..+|||||++.++.+.|+.|+..+++. +.++++|+++|.. ..
T Consensus 81 ~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~ 160 (265)
T 2bjv_A 81 EAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGT 160 (265)
T ss_dssp C---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTS
T ss_pred cccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCC
Confidence 000000000 0000 0013459999999999999999999999864 3467899999864 23
Q ss_pred ccccccCCee--eEEecCCCH--HHHHHHHHH----HHHHcCC----CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhh
Q psy17903 180 IIQPLTSRCS--KFRFKPLAE--NTMLTRLQY----ICEQESV----MCDFKALETLVETS-GGDMRRAITCLQSCARLK 246 (355)
Q Consensus 180 l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~----~~~~~~~----~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~ 246 (355)
+.+.+.+|+. .+.++++.. +++..++.. .+...+. .+++++++.|.... +||+|.+.+.++.+...+
T Consensus 161 ~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 161 FRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp SCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 5678888885 577777765 566655444 3444454 68999999998764 999999999999998877
Q ss_pred CCCCCCHHHHH
Q psy17903 247 GGEGIVNEDVL 257 (355)
Q Consensus 247 ~~~~It~~~v~ 257 (355)
.+..|+.+++.
T Consensus 241 ~~~~i~~~~l~ 251 (265)
T 2bjv_A 241 GTSDYPLDDII 251 (265)
T ss_dssp CCSSSCBCCCC
T ss_pred CCCcCcHHHcc
Confidence 76778776653
No 53
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.80 E-value=4.4e-19 Score=160.38 Aligned_cols=186 Identities=16% Similarity=0.243 Sum_probs=140.4
Q ss_pred CcccccHHHHHHHHHHHhcCC--------CC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH
Q psy17903 45 DDVIEQQEVVSVLKKCLSGAD--------LP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~~--------~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (355)
++++|++.+++.+...+..+. .. +++|+||+|||||++|+++++.+..... .++.++++..........
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~--~~~~~~~~~~~~~~~~~~ 94 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE--AMIRIDMTEYMEKHAVSR 94 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGG--GEEEEEGGGCCSTTHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCc--ceEEeecccccccccHHH
Confidence 468899999999988886531 22 4999999999999999999999865432 466666654332221111
Q ss_pred HH---------------HHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCcc
Q psy17903 116 KV---------------KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTR 169 (355)
Q Consensus 116 ~i---------------~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~ 169 (355)
.+ ...... ..+.+|||||+|.++.+.++.|++.|+++. .+++
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~------------~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRR------------RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHH------------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred hcCCCCccccccccchHHHHHHh------------CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 11 111110 134699999999999999999999998754 3566
Q ss_pred EEEEecC--------------------------CccccccccCCe-eeEEecCCCHHHHHHHHHHHHHHc---------C
Q psy17903 170 FCLICNY--------------------------VSCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQE---------S 213 (355)
Q Consensus 170 ~Il~~~~--------------------------~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~---------~ 213 (355)
+|+++|. ...+.+++.+|+ ..+.|.||+.+++..++...+.+. .
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~ 242 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRIS 242 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCE
T ss_pred EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 8999987 345778899999 589999999999999998876642 3
Q ss_pred CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Q psy17903 214 VMCDFKALETLVETS---GGDMRRAITCLQSCAR 244 (355)
Q Consensus 214 ~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~~ 244 (355)
..+++++++.|++.+ +||+|.+.+.++.+..
T Consensus 243 ~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 243 LELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp EEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred EEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 568999999999865 5999999999987665
No 54
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.79 E-value=2.2e-18 Score=155.08 Aligned_cols=188 Identities=19% Similarity=0.182 Sum_probs=130.3
Q ss_pred cccCCCCCCcccccHHHHHHHHHHHhc-----------C-CCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeec
Q psy17903 37 EKYRPKTIDDVIEQQEVVSVLKKCLSG-----------A-DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (355)
Q Consensus 37 ~k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 103 (355)
.++.+.+|++++|.+.+++.|.+++.. + ..+ +++|+||||||||++|+++++.+. .+++.++
T Consensus 7 ~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~-----~~~i~v~ 81 (301)
T 3cf0_A 7 VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ-----ANFISIK 81 (301)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CEEEEEC
T ss_pred ccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhC-----CCEEEEE
Confidence 345667899999999999999888753 1 223 399999999999999999999973 4566776
Q ss_pred CCCcc------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHhhh
Q psy17903 104 ASDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTMEK 163 (355)
Q Consensus 104 ~~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~~le~ 163 (355)
+++.. ....++..+...... ...+|||||+|.+... .++.|+..++.
T Consensus 82 ~~~l~~~~~g~~~~~~~~~f~~a~~~-------------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~ 148 (301)
T 3cf0_A 82 GPELLTMWFGESEANVREIFDKARQA-------------APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDG 148 (301)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHT-------------CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHS
T ss_pred hHHHHhhhcCchHHHHHHHHHHHHhc-------------CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhc
Confidence 54321 111223333322211 2249999999987653 35778888874
Q ss_pred --ccCCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Q psy17903 164 --ETKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAIT 237 (355)
Q Consensus 164 --~~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~ 237 (355)
...++++|++||.++.+.+++.+ |+. .+.|+.|+.++..++++..++..+.. .+..++.++..+.| +.+.+.+
T Consensus 149 ~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~ 227 (301)
T 3cf0_A 149 MSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTE 227 (301)
T ss_dssp SCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHH
T ss_pred ccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHH
Confidence 24568889999999999999887 774 79999999999999999988776543 12234556666644 3345555
Q ss_pred HHHHHH
Q psy17903 238 CLQSCA 243 (355)
Q Consensus 238 ~l~~~~ 243 (355)
.++.++
T Consensus 228 l~~~a~ 233 (301)
T 3cf0_A 228 ICQRAC 233 (301)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 55
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.78 E-value=7.5e-20 Score=161.99 Aligned_cols=210 Identities=17% Similarity=0.169 Sum_probs=142.5
Q ss_pred cccCCCCCCcccccHHHHHHHHHHHh-----------cCCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC
Q psy17903 37 EKYRPKTIDDVIEQQEVVSVLKKCLS-----------GADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (355)
Q Consensus 37 ~k~~p~~~~~~vg~~~~~~~l~~~l~-----------~~~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 104 (355)
.++.+.+|++++|++.+++.+.+.+. +...+ +++|+||||||||++|+++++.+.. +++.+++
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~-----~~~~v~~ 77 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV-----PFFSMGG 77 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC-----CCCCCCS
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-----CEEEech
Confidence 35667789999999999988887765 22333 3999999999999999999999843 3444554
Q ss_pred CCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHH---------------HHHHHHHhhh
Q psy17903 105 SDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA---------------QAALRRTMEK 163 (355)
Q Consensus 105 ~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~---------------~~~Ll~~le~ 163 (355)
.+... ...++..+...... ...+|||||+|.+.... ++.|+..++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~a~~~-------------~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~ 144 (268)
T 2r62_A 78 SSFIEMFVGLGASRVRDLFETAKKQ-------------APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDG 144 (268)
T ss_dssp CTTTTSCSSSCSSSSSTTHHHHHHS-------------CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTC
T ss_pred HHHHHhhcchHHHHHHHHHHHHHhc-------------CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhC
Confidence 43211 11111222222111 12399999999996532 3456666664
Q ss_pred cc---CCccEEEEecCCccccccccC--Ce-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Q psy17903 164 ET---KSTRFCLICNYVSCIIQPLTS--RC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGG-DMRRAI 236 (355)
Q Consensus 164 ~~---~~~~~Il~~~~~~~l~~~l~s--r~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~ 236 (355)
.. ..+++|+++|.+..+.+++.+ |+ ..+.|++|+.++..++++..++..... ++..++.++..+.| +.+.+.
T Consensus 145 ~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~ 223 (268)
T 2r62_A 145 FGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLA 223 (268)
T ss_dssp SSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHH
T ss_pred cccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHH
Confidence 32 236777788888888888888 44 378999999999999999887654322 22235667777766 456777
Q ss_pred HHHHHHHHhh---CCCCCCHHHHHHHhCCCCh
Q psy17903 237 TCLQSCARLK---GGEGIVNEDVLEVTGVIPN 265 (355)
Q Consensus 237 ~~l~~~~~~~---~~~~It~~~v~~~~~~~~~ 265 (355)
+.++.+...+ +...|+.+++.+++....+
T Consensus 224 ~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~ 255 (268)
T 2r62_A 224 NIINEAALLAGRNNQKEVRQQHLKEAVERGIA 255 (268)
T ss_dssp HHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCC
T ss_pred HHHHHHHHHHHHhccCCcCHHHHHHHHHHHhh
Confidence 8888777665 3467999999988876544
No 56
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.77 E-value=4.2e-18 Score=162.25 Aligned_cols=216 Identities=16% Similarity=0.129 Sum_probs=150.1
Q ss_pred cccCCCCCCcccccHHHHHHHHHHHhc-------------CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeec
Q psy17903 37 EKYRPKTIDDVIEQQEVVSVLKKCLSG-------------ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (355)
Q Consensus 37 ~k~~p~~~~~~vg~~~~~~~l~~~l~~-------------~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 103 (355)
+.+++..|++++|++.+++.|.+.+.. ....++||+||||||||++|+++++.+ +.+++.++
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~-----~~~fv~vn 270 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLIN 270 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC-----SSEEEEEE
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh-----CCCEEEEE
Confidence 456777899999999999999888753 222349999999999999999999987 44677777
Q ss_pred CCCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhhhc--
Q psy17903 104 ASDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEKE-- 164 (355)
Q Consensus 104 ~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~-- 164 (355)
+++... ...++..+...... ...+|||||+|.+.. ..++.|+..|+..
T Consensus 271 ~~~l~~~~~g~~~~~~~~~f~~A~~~-------------~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~ 337 (489)
T 3hu3_A 271 GPEIMSKLAGESESNLRKAFEEAEKN-------------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (489)
T ss_dssp HHHHHTSCTTHHHHHHHHHHHHHHHT-------------CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT
T ss_pred chHhhhhhcchhHHHHHHHHHHHHhc-------------CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc
Confidence 654211 12223333322211 124999999976643 5678899998853
Q ss_pred cCCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHH
Q psy17903 165 TKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGD-MRRAITCLQ 240 (355)
Q Consensus 165 ~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~-~r~~~~~l~ 240 (355)
...+++|.+||.+..+.+++++ |+. .+.|+.|+.++..++++.+++...... +..+..++..+.|. .+.+.+.++
T Consensus 338 ~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~-~~~l~~la~~t~g~s~~dL~~L~~ 416 (489)
T 3hu3_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-DVDLEQVANETHGHVGADLAALCS 416 (489)
T ss_dssp TSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT-TCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc-hhhHHHHHHHccCCcHHHHHHHHH
Confidence 4567888899999999999998 444 799999999999999998876554332 23467788888774 444555555
Q ss_pred HHHHhh--CC------------------CCCCHHHHHHHhCCCChHHHHHH
Q psy17903 241 SCARLK--GG------------------EGIVNEDVLEVTGVIPNPWIEKL 271 (355)
Q Consensus 241 ~~~~~~--~~------------------~~It~~~v~~~~~~~~~~~~~~l 271 (355)
.++..+ .. ..|+.+++.+++....++.+.++
T Consensus 417 ~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~ 467 (489)
T 3hu3_A 417 EAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRET 467 (489)
T ss_dssp HHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGG
T ss_pred HHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhhhcc
Confidence 554443 11 13677777777776655544433
No 57
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=1.4e-18 Score=145.24 Aligned_cols=163 Identities=17% Similarity=0.183 Sum_probs=115.7
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCc-----cccceeeecCCCc
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELNASDD 107 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~ 107 (355)
.+|.++|+|..|++++|+++.++.+.+.+..+...+++|+||+|+|||++++.+++.+.... ....++.+++...
T Consensus 10 ~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (195)
T 1jbk_A 10 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL 89 (195)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHH
T ss_pred HHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHH
Confidence 57999999999999999999999999999887767799999999999999999999985421 1234455554321
Q ss_pred c----chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH--------HHHHHHHHhhhccCCccEEEEec
Q psy17903 108 R----GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------AQAALRRTMEKETKSTRFCLICN 175 (355)
Q Consensus 108 ~----~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------~~~~Ll~~le~~~~~~~~Il~~~ 175 (355)
. ........+.......... ....+|||||+|.+... .++.|..+++. ..+.+|++++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~--~~~~~i~~~~ 159 (195)
T 1jbk_A 90 VAGAKYRGEFEERLKGVLNDLAKQ--------EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--GELHCVGATT 159 (195)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHHHS--------TTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--TSCCEEEEEC
T ss_pred hccCCccccHHHHHHHHHHHHhhc--------CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc--CCeEEEEeCC
Confidence 1 1112222222221111000 03359999999999632 25667777764 4567888887
Q ss_pred CCc-----cccccccCCeeeEEecCCCHHHHHHHH
Q psy17903 176 YVS-----CIIQPLTSRCSKFRFKPLAENTMLTRL 205 (355)
Q Consensus 176 ~~~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l 205 (355)
... .+.+++.+||..+.|.+|+.++..+++
T Consensus 160 ~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 160 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 654 577999999999999999999987664
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.76 E-value=2.6e-18 Score=175.24 Aligned_cols=201 Identities=15% Similarity=0.135 Sum_probs=142.3
Q ss_pred CCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCc-----cccceeeecCCC
Q psy17903 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELNASD 106 (355)
Q Consensus 32 ~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~ 106 (355)
..+|.++|+|.+|++++|++..+..+.+.+..+..++++|+||||+|||++++.+++.+.... .+..++.+++..
T Consensus 157 ~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 236 (854)
T 1qvr_A 157 GIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS 236 (854)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred HHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH
Confidence 467999999999999999999999999999888777899999999999999999999984321 134567777654
Q ss_pred ccc----h----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC--------HHHHHHHHHHhhhccCCccE
Q psy17903 107 DRG----I----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT--------HAAQAALRRTMEKETKSTRF 170 (355)
Q Consensus 107 ~~~----~----~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~--------~~~~~~Ll~~le~~~~~~~~ 170 (355)
... . ..+...+...... + ...+|||||+|.+. .+..+.|...++. ..+.+
T Consensus 237 l~~g~~~~g~~~~~l~~~~~~~~~~--------~----~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~--~~i~~ 302 (854)
T 1qvr_A 237 LLAGAKYRGEFEERLKAVIQEVVQS--------Q----GEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GELRL 302 (854)
T ss_dssp ---------CHHHHHHHHHHHHHTT--------C----SSEEEEECCC-------------------HHHHHT--TCCCE
T ss_pred hhccCccchHHHHHHHHHHHHHHhc--------C----CCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC--CCeEE
Confidence 321 1 1122222222211 0 23499999999997 3445677778874 35677
Q ss_pred EEEecCCc----cccccccCCeeeEEecCCCHHHHHHHHHHHHH----HcCCCCCHHHHHHHHHHcCC------CHHHHH
Q psy17903 171 CLICNYVS----CIIQPLTSRCSKFRFKPLAENTMLTRLQYICE----QESVMCDFKALETLVETSGG------DMRRAI 236 (355)
Q Consensus 171 Il~~~~~~----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~l~~~~~g------~~r~~~ 236 (355)
|++|+... .+.+++.+||..+.|++|+.++...+++..+. ..++.++++++..++..+.| -+.+++
T Consensus 303 I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai 382 (854)
T 1qvr_A 303 IGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAI 382 (854)
T ss_dssp EEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHH
T ss_pred EEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHH
Confidence 88887543 36789999999999999999999999987765 35788999999999887743 378888
Q ss_pred HHHHHHHHhh
Q psy17903 237 TCLQSCARLK 246 (355)
Q Consensus 237 ~~l~~~~~~~ 246 (355)
+.++.++...
T Consensus 383 ~lldea~a~~ 392 (854)
T 1qvr_A 383 DLIDEAAARL 392 (854)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8887766543
No 59
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.76 E-value=2.3e-17 Score=166.58 Aligned_cols=222 Identities=15% Similarity=0.117 Sum_probs=157.3
Q ss_pred CCCCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCcc-----ccceeee
Q psy17903 28 TRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMY-----RERILEL 102 (355)
Q Consensus 28 ~~~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~-----~~~~~~~ 102 (355)
-.....+|.++|+|..|++++|++..+..+.+.+......+++|+||||||||++|+.+++.+.+... +..++.+
T Consensus 169 l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~ 248 (758)
T 1r6b_X 169 LENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL 248 (758)
T ss_dssp CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEEC
T ss_pred HHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEE
Confidence 34456789999999999999999999999999998877778999999999999999999999854221 2234444
Q ss_pred cCCCcc----chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHhhhccCCcc
Q psy17903 103 NASDDR----GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT---------HAAQAALRRTMEKETKSTR 169 (355)
Q Consensus 103 ~~~~~~----~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---------~~~~~~Ll~~le~~~~~~~ 169 (355)
+..... ....+...+.......... ...+|||||+|.+. .+..+.|...+++ ..++
T Consensus 249 ~~~~l~~~~~~~g~~e~~l~~~~~~~~~~---------~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~~~ 317 (758)
T 1r6b_X 249 DIGSLLAGTKYRGDFEKRFKALLKQLEQD---------TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIR 317 (758)
T ss_dssp CCC---CCCCCSSCHHHHHHHHHHHHSSS---------SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CCCE
T ss_pred cHHHHhccccccchHHHHHHHHHHHHHhc---------CCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CCeE
Confidence 433211 1112222222222111110 23599999999982 3345556666664 4567
Q ss_pred EEEEecCC-----ccccccccCCeeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHH
Q psy17903 170 FCLICNYV-----SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGG------DMRR 234 (355)
Q Consensus 170 ~Il~~~~~-----~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~ 234 (355)
+|++++.. ....+++.+|+..+.|.+|+.++...+++..+.. .++.++++++..++..+.| .+..
T Consensus 318 ~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~ 397 (758)
T 1r6b_X 318 VIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDK 397 (758)
T ss_dssp EEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHH
T ss_pred EEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchH
Confidence 77787753 2356889999999999999999999999887765 6888999999998887644 3557
Q ss_pred HHHHHHHHHHhh-------CCCCCCHHHHHHHh
Q psy17903 235 AITCLQSCARLK-------GGEGIVNEDVLEVT 260 (355)
Q Consensus 235 ~~~~l~~~~~~~-------~~~~It~~~v~~~~ 260 (355)
+++.++.++... ....|+.+++.+++
T Consensus 398 ~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~ 430 (758)
T 1r6b_X 398 AIDVIDEAGARARLMPVSKRKKTVNVADIESVV 430 (758)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccCCccCHHHHHHHH
Confidence 777776655432 24568999998775
No 60
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.76 E-value=3.8e-18 Score=165.19 Aligned_cols=211 Identities=18% Similarity=0.233 Sum_probs=140.4
Q ss_pred CcccccHHHHHHHHHHHh------cCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHH
Q psy17903 45 DDVIEQQEVVSVLKKCLS------GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVK 118 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~------~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~ 118 (355)
++++|++++...+...+. ....++++|+||||||||+++++++..+. ..+..+++........+.....
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~~~~~~~~g~~~ 155 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGVRDESEIRGHRR 155 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC------------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEecccchhhhhhhHHH
Confidence 458899999888766542 12234599999999999999999999983 3455666544322211111111
Q ss_pred HHHHhh----ccCCCCCCCCCCCcEEEEEeCCCCCCHH----HHHHHHHHhhhcc---------------CCccEEEEec
Q psy17903 119 TFAQQT----ASGFNQDGKPCPPFKIVILDEADSMTHA----AQAALRRTMEKET---------------KSTRFCLICN 175 (355)
Q Consensus 119 ~~~~~~----~~~~~~~~~~~~~~~vliiDe~d~l~~~----~~~~Ll~~le~~~---------------~~~~~Il~~~ 175 (355)
.+.... ...... .. ....++||||+|.+..+ .++.|++.|+... .+++||+++|
T Consensus 156 ~~ig~~~~~~~~~~~~-a~--~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN 232 (543)
T 3m6a_A 156 TYVGAMPGRIIQGMKK-AG--KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATAN 232 (543)
T ss_dssp --------CHHHHHHT-TC--SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECS
T ss_pred HHhccCchHHHHHHHH-hh--ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccC
Confidence 100000 000000 00 12349999999999887 4588888887432 4578899999
Q ss_pred CCccccccccCCeeeEEecCCCHHHHHHHHHHHHHH-----c-----CCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Q psy17903 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ-----E-----SVMCDFKALETLVETS--GGDMRRAITCLQSCA 243 (355)
Q Consensus 176 ~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~-----~-----~~~~~~~~~~~l~~~~--~g~~r~~~~~l~~~~ 243 (355)
....+.++|++||..+.|++|+.++...+++.++.. . ++.++++++..++..+ +|++|.+.+.++.++
T Consensus 233 ~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~ 312 (543)
T 3m6a_A 233 NLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAIC 312 (543)
T ss_dssp STTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHH
T ss_pred ccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHH
Confidence 999999999999999999999999999998887632 2 4567899999988754 489999998887765
Q ss_pred Hhh---------CCCCCCHHHHHHHhCCC
Q psy17903 244 RLK---------GGEGIVNEDVLEVTGVI 263 (355)
Q Consensus 244 ~~~---------~~~~It~~~v~~~~~~~ 263 (355)
..+ +...|+.+++.++++..
T Consensus 313 ~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 313 RKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred HHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 543 12358899999888654
No 61
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.75 E-value=2.1e-17 Score=157.18 Aligned_cols=214 Identities=20% Similarity=0.186 Sum_probs=147.6
Q ss_pred CCCccccccCCCCCCcccccHHHHHHHHHHHhc-----------CCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccc
Q psy17903 31 KPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------ADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRER 98 (355)
Q Consensus 31 ~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~ 98 (355)
....|.+. .+.+|++++|+++++..+.+.+.. ...+ +++|+||||||||+++++++..+. ..
T Consensus 18 ~~~~~~~~-~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~-----~~ 91 (499)
T 2dhr_A 18 RARVLTEA-PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VP 91 (499)
T ss_dssp CCEEECSC-CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT-----CC
T ss_pred cceeeccC-CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC-----CC
Confidence 33455555 677899999999999888776531 1223 399999999999999999999873 45
Q ss_pred eeeecCCCccc--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHhh
Q psy17903 99 ILELNASDDRG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTME 162 (355)
Q Consensus 99 ~~~~~~~~~~~--~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le 162 (355)
++.+++++... .......+....... ....+ .++||||+|.+.. ...+.|+..|+
T Consensus 92 ~i~i~g~~~~~~~~g~~~~~v~~lfq~a-----~~~~p----~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ld 162 (499)
T 2dhr_A 92 FITASGSDFVEMFVGVGAARVRDLFETA-----KRHAP----CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMD 162 (499)
T ss_dssp EEEEEGGGGTSSCTTHHHHHHHHHTTTS-----SSSSS----CEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGG
T ss_pred EEEEehhHHHHhhhhhHHHHHHHHHHHH-----HhcCC----CEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhc
Confidence 67777765321 111122222211111 00112 3999999988742 23455666665
Q ss_pred hcc--CCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCCH-HHH
Q psy17903 163 KET--KSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKA-LETLVETSGGDM-RRA 235 (355)
Q Consensus 163 ~~~--~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~g~~-r~~ 235 (355)
... ..++++.++|.++.+.+++.++++ .+.++.|+.++..++++..++ +..+++++ +..++..+.|+. +.+
T Consensus 163 g~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL 240 (499)
T 2dhr_A 163 GFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADL 240 (499)
T ss_dssp GCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHH
T ss_pred ccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHH
Confidence 432 345666777888888899988654 899999999999999987654 34555443 788899999988 888
Q ss_pred HHHHHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 236 ITCLQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 236 ~~~l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
.+.++.++.++ +...|+.+++.+++.
T Consensus 241 ~~lv~~Aa~~A~~~~~~~It~~dl~~al~ 269 (499)
T 2dhr_A 241 ENLLNEAALLAAREGRRKITMKDLEEAAD 269 (499)
T ss_dssp HHHHHHHHHHHTTTCCSSCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 89998887765 235799999987663
No 62
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.74 E-value=2e-17 Score=166.98 Aligned_cols=196 Identities=16% Similarity=0.199 Sum_probs=142.3
Q ss_pred CCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCc-----cccceeeecC
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELNA 104 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~ 104 (355)
....+|.++|+|..+++++|++..++.+...+.....+++||+||||||||++|+++++.+.... .+..++.+++
T Consensus 165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 34678999999999999999999999999999888878899999999999999999999985422 2334555555
Q ss_pred CCc-cc--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCc---
Q psy17903 105 SDD-RG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS--- 178 (355)
Q Consensus 105 ~~~-~~--~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~--- 178 (355)
... .+ ...++..+...... ...+|||| ...+.++.|+..|++ ..+++|++||...
T Consensus 245 g~~~~G~~e~~l~~~~~~~~~~-------------~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at~~~~~~~ 305 (758)
T 3pxi_A 245 GTKYRGEFEDRLKKVMDEIRQA-------------GNIILFID----AAIDASNILKPSLAR--GELQCIGATTLDEYRK 305 (758)
T ss_dssp --------CTTHHHHHHHHHTC-------------CCCEEEEC----C--------CCCTTS--SSCEEEEECCTTTTHH
T ss_pred cccccchHHHHHHHHHHHHHhc-------------CCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCCChHHHHH
Confidence 111 00 11333333333221 22399999 445677888888883 4678888888765
Q ss_pred --cccccccCCeeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCC------CHHHHHHHHHHHHH
Q psy17903 179 --CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ----ESVMCDFKALETLVETSGG------DMRRAITCLQSCAR 244 (355)
Q Consensus 179 --~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g------~~r~~~~~l~~~~~ 244 (355)
.+.+++++||..+.|++|+.++...+++..+.. .++.++++++..++..+.+ .++.++..++.++.
T Consensus 306 ~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~ 383 (758)
T 3pxi_A 306 YIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGS 383 (758)
T ss_dssp HHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHH
T ss_pred HhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHH
Confidence 578999999999999999999999999977665 6788999999999887633 45778888876654
No 63
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.74 E-value=4e-17 Score=144.72 Aligned_cols=179 Identities=13% Similarity=0.229 Sum_probs=121.0
Q ss_pred CcccccHHHHHHHHH-------HHh---cCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc-c--h-
Q psy17903 45 DDVIEQQEVVSVLKK-------CLS---GADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR-G--I- 110 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~-------~l~---~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~-~--~- 110 (355)
..++|++..+..+.. .+. .....++||+||||||||++|+++++.+ +.+++.+++++.. + .
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~-----~~~~~~i~~~~~~~g~~~~ 107 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES-----NFPFIKICSPDKMIGFSET 107 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH-----TCSEEEEECGGGCTTCCHH
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh-----CCCEEEEeCHHHhcCCchH
Confidence 457787766554443 343 2222349999999999999999999997 3456666665421 1 1
Q ss_pred ---HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCC----------CHHHHHHHHHHhhh---ccCCccEEEEe
Q psy17903 111 ---QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM----------THAAQAALRRTMEK---ETKSTRFCLIC 174 (355)
Q Consensus 111 ---~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l----------~~~~~~~Ll~~le~---~~~~~~~Il~~ 174 (355)
..++..+..... ....+|||||+|.+ ....++.|...++. ....+++|+++
T Consensus 108 ~~~~~~~~~~~~~~~-------------~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~tt 174 (272)
T 1d2n_A 108 AKCQAMKKIFDDAYK-------------SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT 174 (272)
T ss_dssp HHHHHHHHHHHHHHT-------------SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEE
T ss_pred HHHHHHHHHHHHHHh-------------cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEec
Confidence 222222222211 03469999999987 44556677777764 33456677788
Q ss_pred cCCccccc-cccCC-eeeEEecCCCH-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-----CHHHHHHHHHHHHHhh
Q psy17903 175 NYVSCIIQ-PLTSR-CSKFRFKPLAE-NTMLTRLQYICEQESVMCDFKALETLVETSGG-----DMRRAITCLQSCARLK 246 (355)
Q Consensus 175 ~~~~~l~~-~l~sr-~~~i~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-----~~r~~~~~l~~~~~~~ 246 (355)
|.+..+.+ .+.+| +..+.+++++. +++..++... ..++++++..+++.+.| |+|++++.++.+...+
T Consensus 175 n~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~-----~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~ 249 (272)
T 1d2n_A 175 SRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELL-----GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD 249 (272)
T ss_dssp SCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH-----TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC
T ss_pred CChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhc-----CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc
Confidence 87766655 57778 46889988887 6666666542 35789999999999988 9999999999876543
No 64
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.73 E-value=1.5e-16 Score=139.54 Aligned_cols=209 Identities=19% Similarity=0.156 Sum_probs=137.2
Q ss_pred ccccCCCCCCcccccHHHHHHHHHHHhc-----------CCC-CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeec
Q psy17903 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSG-----------ADL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (355)
Q Consensus 36 ~~k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~~~-~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 103 (355)
...+.+.+|++++|.++++..+.+.... ... ++++|+||+|+|||+++++++..+. ..++.++
T Consensus 7 ~~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~ 81 (254)
T 1ixz_A 7 LTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITAS 81 (254)
T ss_dssp -CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEE
T ss_pred ccCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC-----CCEEEee
Confidence 3455567899999999888877765431 122 2399999999999999999999873 3455555
Q ss_pred CCCccc--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHhhhcc--
Q psy17903 104 ASDDRG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTMEKET-- 165 (355)
Q Consensus 104 ~~~~~~--~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~~-- 165 (355)
+.+... .......+.......... ...++++||+|.+.. ...+.++..|+...
T Consensus 82 ~~~~~~~~~~~~~~~i~~~~~~~~~~---------~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 82 GSDFVEMFVGVGAARVRDLFETAKRH---------APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp HHHHHHSCTTHHHHHHHHHHHHHTTS---------SSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhc---------CCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 432110 111111122111111000 124999999986621 12345555555333
Q ss_pred CCccEEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHcCCCH-HHHHHHHH
Q psy17903 166 KSTRFCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFKA-LETLVETSGGDM-RRAITCLQ 240 (355)
Q Consensus 166 ~~~~~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~l~~~~~g~~-r~~~~~l~ 240 (355)
...+++.+++.++.+.+++.++++ .+.++.|+.++..++++..++ +..++++. +..++..+.|+. +.+.+.++
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~~~~~ 230 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLENLLN 230 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHHHHHHHHH
Confidence 234566677888889999988543 789999999999999987764 34454433 778999998876 77888888
Q ss_pred HHHHhh---CCCCCCHHHHHHHh
Q psy17903 241 SCARLK---GGEGIVNEDVLEVT 260 (355)
Q Consensus 241 ~~~~~~---~~~~It~~~v~~~~ 260 (355)
.++..+ +...|+.+++.+++
T Consensus 231 ~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 231 EAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHhcCCCcCHHHHHHHh
Confidence 776654 34679999998875
No 65
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.72 E-value=6.1e-17 Score=150.29 Aligned_cols=207 Identities=18% Similarity=0.199 Sum_probs=136.0
Q ss_pred cccccHHHHHHHHHHHh----c-------------------------C-CCCeEEEECCCCCCHHHHHHHHHHHhcCCcc
Q psy17903 46 DVIEQQEVVSVLKKCLS----G-------------------------A-DLPHFLFYGPPGTGKTSTMIAACHQLFGDMY 95 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~----~-------------------------~-~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~ 95 (355)
.++||+.+++.|..++. . . ...+++|+||||||||++|+++++.+.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~---- 97 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLD---- 97 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTT----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhC----
Confidence 47999999998887762 1 1 123599999999999999999999983
Q ss_pred ccceeeecCCCccch----HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHH
Q psy17903 96 RERILELNASDDRGI----QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAAL 157 (355)
Q Consensus 96 ~~~~~~~~~~~~~~~----~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~L 157 (355)
.+++.+++...... ......+............ .+...+|||||+|.+... .++.|
T Consensus 98 -~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~L 171 (376)
T 1um8_A 98 -IPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ-----KAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQAL 171 (376)
T ss_dssp -CCEEEEEGGGCC--------CTHHHHHHHHHTTTCHH-----HHTTSEEEEETGGGC--------------CHHHHHHH
T ss_pred -CCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhh-----hcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHH
Confidence 34556665442211 0111111111111000000 002349999999999887 89999
Q ss_pred HHHhhhcc---------------------CCccEEEEecC----------------------------------------
Q psy17903 158 RRTMEKET---------------------KSTRFCLICNY---------------------------------------- 176 (355)
Q Consensus 158 l~~le~~~---------------------~~~~~Il~~~~---------------------------------------- 176 (355)
+..|+... .++++|+++|.
T Consensus 172 l~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l 251 (376)
T 1um8_A 172 LKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDL 251 (376)
T ss_dssp HHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHH
T ss_pred HHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHH
Confidence 99998542 34567777651
Q ss_pred -CccccccccCCe-eeEEecCCCHHHHHHHHHH----HHH---------HcCCCCCHHHHHHHHHHcC---CCHHHHHHH
Q psy17903 177 -VSCIIQPLTSRC-SKFRFKPLAENTMLTRLQY----ICE---------QESVMCDFKALETLVETSG---GDMRRAITC 238 (355)
Q Consensus 177 -~~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~----~~~---------~~~~~~~~~~~~~l~~~~~---g~~r~~~~~ 238 (355)
...+.+.+.+|+ ..+.|++++.+++..++.. +++ ..++.+++++++.|++.+. ||+|.+.+.
T Consensus 252 ~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~ 331 (376)
T 1um8_A 252 VTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAI 331 (376)
T ss_dssp HHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHH
T ss_pred hhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHH
Confidence 012457788998 5899999999999998862 211 1245689999999998864 999999999
Q ss_pred HHHHHHhh-----C--C--CCCCHHHHHHHhCC
Q psy17903 239 LQSCARLK-----G--G--EGIVNEDVLEVTGV 262 (355)
Q Consensus 239 l~~~~~~~-----~--~--~~It~~~v~~~~~~ 262 (355)
++++.... . . -.||.+++.+....
T Consensus 332 le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 332 IEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp HHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCC
T ss_pred HHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCc
Confidence 98876532 1 1 14888888775543
No 66
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.72 E-value=2.4e-17 Score=161.97 Aligned_cols=226 Identities=20% Similarity=0.238 Sum_probs=152.7
Q ss_pred ccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc-----
Q psy17903 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR----- 108 (355)
Q Consensus 34 ~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~----- 108 (355)
....+|+|+.|++++|++.+++.+...+..+. +++|+||+|+|||++|++++..+.........+..+..+..
T Consensus 30 ~~~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~ 107 (604)
T 3k1j_A 30 TEEIEVPEKLIDQVIGQEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIK 107 (604)
T ss_dssp GGGSCCCSSHHHHCCSCHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEE
T ss_pred cCcccccccccceEECchhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEE
Confidence 44679999999999999999999999999873 79999999999999999999987543321111111111100
Q ss_pred -----chHHHHHHHHHHHHh--------------------------------------------hcc-------CCCCCC
Q psy17903 109 -----GIQVIRDKVKTFAQQ--------------------------------------------TAS-------GFNQDG 132 (355)
Q Consensus 109 -----~~~~i~~~i~~~~~~--------------------------------------------~~~-------~~~~~~ 132 (355)
....+.+........ +.. +....+
T Consensus 108 ~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g 187 (604)
T 3k1j_A 108 TVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTP 187 (604)
T ss_dssp EEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCC
T ss_pred EEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccc
Confidence 001111111110000 000 000000
Q ss_pred -----CC----CCCcEEEEEeCCCCCCHHHHHHHHHHhhhc---------------------cCCccEEEEecCC--ccc
Q psy17903 133 -----KP----CPPFKIVILDEADSMTHAAQAALRRTMEKE---------------------TKSTRFCLICNYV--SCI 180 (355)
Q Consensus 133 -----~~----~~~~~vliiDe~d~l~~~~~~~Ll~~le~~---------------------~~~~~~Il~~~~~--~~l 180 (355)
.+ .++.+++||||++.+++..|+.|++.|++. +.++++|+++|.. ..+
T Consensus 188 ~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l 267 (604)
T 3k1j_A 188 AHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKM 267 (604)
T ss_dssp GGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHS
T ss_pred ccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhc
Confidence 00 024469999999999999999999999843 2356789999865 578
Q ss_pred cccccCCee----eEEecCC---CHHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHc---CC-------CHHHHHHH
Q psy17903 181 IQPLTSRCS----KFRFKPL---AENTMLTRLQYICEQE-----SVMCDFKALETLVETS---GG-------DMRRAITC 238 (355)
Q Consensus 181 ~~~l~sr~~----~i~~~~~---~~~~~~~~l~~~~~~~-----~~~~~~~~~~~l~~~~---~g-------~~r~~~~~ 238 (355)
.++|.+||. .+.|+.. ..+.+..+++..++.. ...++++++..|++.+ .| ++|.+.+.
T Consensus 268 ~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~l 347 (604)
T 3k1j_A 268 HPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGI 347 (604)
T ss_dssp CHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHH
T ss_pred CHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHH
Confidence 999999994 5565432 4555666665555432 2578999999998865 56 69999999
Q ss_pred HHHHHHhh---CCCCCCHHHHHHHhC
Q psy17903 239 LQSCARLK---GGEGIVNEDVLEVTG 261 (355)
Q Consensus 239 l~~~~~~~---~~~~It~~~v~~~~~ 261 (355)
++.+..++ +...|+.+++.+++.
T Consensus 348 lr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 348 VRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHhcCcccccHHHHHHHHH
Confidence 98876554 556899999998874
No 67
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.71 E-value=2.8e-16 Score=139.75 Aligned_cols=205 Identities=20% Similarity=0.155 Sum_probs=134.7
Q ss_pred CCCCCCcccccHHHHHHHHHHHhc-----------CCC-CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 40 RPKTIDDVIEQQEVVSVLKKCLSG-----------ADL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 40 ~p~~~~~~vg~~~~~~~l~~~l~~-----------~~~-~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
.+.+|++++|.++++..+.+.... ... ++++|+||+|+|||+++++++..+. ..++.+++.+.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~ 109 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 109 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHH
Confidence 566899999999998887766531 122 2499999999999999999999873 34555554321
Q ss_pred cc--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC-----------HH---HHHHHHHHhhhcc--CCcc
Q psy17903 108 RG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT-----------HA---AQAALRRTMEKET--KSTR 169 (355)
Q Consensus 108 ~~--~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~-----------~~---~~~~Ll~~le~~~--~~~~ 169 (355)
.. .......+.......... ...++++||+|.+. .. ..+.++..++... ...+
T Consensus 110 ~~~~~~~~~~~i~~~~~~~~~~---------~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i 180 (278)
T 1iy2_A 110 VEMFVGVGAARVRDLFETAKRH---------APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 180 (278)
T ss_dssp HHSTTTHHHHHHHHHHHHHHTS---------CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEE
T ss_pred HHHHhhHHHHHHHHHHHHHHhc---------CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEE
Confidence 10 111111121111111100 12499999998652 11 1233444444322 2345
Q ss_pred EEEEecCCccccccccCCee---eEEecCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHcCCCH-HHHHHHHHHHHH
Q psy17903 170 FCLICNYVSCIIQPLTSRCS---KFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLVETSGGDM-RRAITCLQSCAR 244 (355)
Q Consensus 170 ~Il~~~~~~~l~~~l~sr~~---~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~l~~~~~g~~-r~~~~~l~~~~~ 244 (355)
++.+++.++.+.+++.++++ .+.|++|+.++..++++..++. ..++++ .+..++..+.|+. +.+.+.++.++.
T Consensus 181 ~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~ 258 (278)
T 1iy2_A 181 VMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLAKRTPGFVGADLENLLNEAAL 258 (278)
T ss_dssp EEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHH
T ss_pred EEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 66677888888999887443 7999999999999999877643 445443 3778899999987 677788887766
Q ss_pred hh---CCCCCCHHHHHHHh
Q psy17903 245 LK---GGEGIVNEDVLEVT 260 (355)
Q Consensus 245 ~~---~~~~It~~~v~~~~ 260 (355)
++ +...|+.+++.+++
T Consensus 259 ~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 259 LAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHTTCCSBCHHHHHHHT
T ss_pred HHHHhCCCCcCHHHHHHHh
Confidence 54 34679999998875
No 68
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.71 E-value=8.9e-18 Score=139.79 Aligned_cols=154 Identities=14% Similarity=0.137 Sum_probs=110.3
Q ss_pred CCCCccccccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCc-----cccceeeecC
Q psy17903 30 NKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDM-----YRERILELNA 104 (355)
Q Consensus 30 ~~~~~~~~k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~ 104 (355)
....+|.++|+|..|++++|++..+..+.+.+..+...+++|+||+|+|||++++.+++.+.... ....++.+++
T Consensus 7 ~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (187)
T 2p65_A 7 KYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDL 86 (187)
T ss_dssp TTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECH
T ss_pred HHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeH
Confidence 45678999999999999999999999999999887777799999999999999999999985421 1234445443
Q ss_pred CCcc----chHH----HHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCC---------HHHHHHHHHHhhhccCC
Q psy17903 105 SDDR----GIQV----IRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT---------HAAQAALRRTMEKETKS 167 (355)
Q Consensus 105 ~~~~----~~~~----i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~---------~~~~~~Ll~~le~~~~~ 167 (355)
.... .... +...+...... + ...+|||||+|.+. .+.++.|...++. ..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~----~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~ 152 (187)
T 2p65_A 87 SSLIAGAKYRGDFEERLKSILKEVQDA--------E----GQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR--GE 152 (187)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHT--------T----TSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT--TC
T ss_pred HHhhcCCCchhHHHHHHHHHHHHHHhc--------C----CceEEEEeCHHHhcccccccccchHHHHHHHHHHhc--CC
Confidence 3211 1111 22222222211 0 23599999999986 3445667777764 45
Q ss_pred ccEEEEecCCc-----cccccccCCeeeEEecCCC
Q psy17903 168 TRFCLICNYVS-----CIIQPLTSRCSKFRFKPLA 197 (355)
Q Consensus 168 ~~~Il~~~~~~-----~l~~~l~sr~~~i~~~~~~ 197 (355)
+++|++++... .+.+++.+||..+.+.+|+
T Consensus 153 ~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 153 LRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp SCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred eeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 77888888654 5789999999999998875
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.71 E-value=6.4e-17 Score=163.23 Aligned_cols=186 Identities=21% Similarity=0.310 Sum_probs=137.6
Q ss_pred CcccccHHHHHHHHHHHhcCC-------CC--eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHH-H
Q psy17903 45 DDVIEQQEVVSVLKKCLSGAD-------LP--HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVI-R 114 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~~-------~~--~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-~ 114 (355)
+.++|++.++..+...+.... .| ++||+||||||||++|+++++.+.+.. .+++.+|++........ .
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~--~~~i~i~~s~~~~~~~~~~ 568 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE--ESMIRIDMSEYMEKHSTSG 568 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCT--TCEEEEEGGGGCSSCCCC-
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--cceEEEechhccccccccc
Confidence 468999999988888875321 12 599999999999999999999986543 36778887654322100 1
Q ss_pred HHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc-----------cCCccEEEEecCCcc----
Q psy17903 115 DKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-----------TKSTRFCLICNYVSC---- 179 (355)
Q Consensus 115 ~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-----------~~~~~~Il~~~~~~~---- 179 (355)
..+....... .+.+|||||++.+.++.++.|++.|++. ..++++|++||....
T Consensus 569 ~~l~~~~~~~------------~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~ 636 (758)
T 3pxi_A 569 GQLTEKVRRK------------PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDK 636 (758)
T ss_dssp --CHHHHHHC------------SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHH
T ss_pred chhhHHHHhC------------CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHH
Confidence 1111111111 2349999999999999999999999973 346789999985432
Q ss_pred --------ccccccCCe-eeEEecCCCHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHH---cCCCHHHHHHH
Q psy17903 180 --------IIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQE---------SVMCDFKALETLVET---SGGDMRRAITC 238 (355)
Q Consensus 180 --------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~l~~~---~~g~~r~~~~~ 238 (355)
+.|.+.+|+ ..+.|++++.+++..++...+... .+.++++++++|++. .+|++|.+.+.
T Consensus 637 ~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~ 716 (758)
T 3pxi_A 637 VMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRA 716 (758)
T ss_dssp HHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHH
T ss_pred HHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHH
Confidence 678899999 699999999999999988877642 456899999999875 47899999999
Q ss_pred HHHHHH
Q psy17903 239 LQSCAR 244 (355)
Q Consensus 239 l~~~~~ 244 (355)
+++...
T Consensus 717 i~~~v~ 722 (758)
T 3pxi_A 717 IQKHVE 722 (758)
T ss_dssp HHHHTH
T ss_pred HHHHHH
Confidence 987543
No 70
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.70 E-value=1.7e-16 Score=160.30 Aligned_cols=182 Identities=18% Similarity=0.216 Sum_probs=135.5
Q ss_pred CcccccHHHHHHHHHHHhcC--------CCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccch-----
Q psy17903 45 DDVIEQQEVVSVLKKCLSGA--------DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI----- 110 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~--------~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~----- 110 (355)
+.++|++.++..+...+... ++. ++||+||||||||++|+++++.+. .+++.++++.....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~-----~~~~~i~~s~~~~~~~~~~ 532 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG-----IELLRFDMSEYMERHTVSR 532 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT-----CEEEEEEGGGCSSSSCCSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc-----CCEEEEechhhcchhhHhh
Confidence 46889999998888777532 122 499999999999999999999983 35666666542110
Q ss_pred -----------HHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCc
Q psy17903 111 -----------QVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KST 168 (355)
Q Consensus 111 -----------~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~ 168 (355)
+.- ..+...... +++.+|||||++.+.++.++.|+..|+++. .++
T Consensus 533 l~g~~~g~~g~~~~-~~l~~~~~~------------~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~ 599 (758)
T 1r6b_X 533 LIGAPPGYVGFDQG-GLLTDAVIK------------HPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNV 599 (758)
T ss_dssp SCCCCSCSHHHHHT-THHHHHHHH------------CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTE
T ss_pred hcCCCCCCcCcccc-chHHHHHHh------------CCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCe
Confidence 100 011111111 134699999999999999999999999753 457
Q ss_pred cEEEEecCCc-------------------------cccccccCCe-eeEEecCCCHHHHHHHHHHHHHHc---------C
Q psy17903 169 RFCLICNYVS-------------------------CIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQE---------S 213 (355)
Q Consensus 169 ~~Il~~~~~~-------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~---------~ 213 (355)
++|+++|... .+.+++.+|+ ..+.|++++.+++..++...+.+. .
T Consensus 600 ~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 679 (758)
T 1r6b_X 600 VLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVS 679 (758)
T ss_dssp EEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred EEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcE
Confidence 7999998632 5678899999 589999999999999999887632 3
Q ss_pred CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Q psy17903 214 VMCDFKALETLVETS---GGDMRRAITCLQSCAR 244 (355)
Q Consensus 214 ~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~~ 244 (355)
+.+++++++.|++.+ +++.|.+.+.++....
T Consensus 680 ~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 680 LEVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp EEECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred EEeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 568999999999876 5558888888887654
No 71
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.69 E-value=2.3e-15 Score=141.15 Aligned_cols=226 Identities=19% Similarity=0.202 Sum_probs=145.1
Q ss_pred CccccccCCCCCCcccccHHHHHHHHHHH-hc---C---CCCeEEE--ECCCCCCHHHHHHHHHHHhcCC----ccccce
Q psy17903 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCL-SG---A---DLPHFLF--YGPPGTGKTSTMIAACHQLFGD----MYRERI 99 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~vg~~~~~~~l~~~l-~~---~---~~~~~ll--~Gp~G~GKt~la~~l~~~l~~~----~~~~~~ 99 (355)
.++...|.| +.++|++..++.|..++ .. + ...+++| +||+|+|||++++.+++.+... .....+
T Consensus 13 ~~~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~ 89 (412)
T 1w5s_A 13 RVFDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQ 89 (412)
T ss_dssp GGGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhcCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeE
Confidence 344455666 57899999998888887 42 2 3334889 9999999999999999987431 012345
Q ss_pred eeecCCCccchHHHH-HHHHHHHHhhccCCCCC-C----------CCCCCcEEEEEeCCCCCC------HHHHHHHHHHh
Q psy17903 100 LELNASDDRGIQVIR-DKVKTFAQQTASGFNQD-G----------KPCPPFKIVILDEADSMT------HAAQAALRRTM 161 (355)
Q Consensus 100 ~~~~~~~~~~~~~i~-~~i~~~~~~~~~~~~~~-~----------~~~~~~~vliiDe~d~l~------~~~~~~Ll~~l 161 (355)
+.+++........+. ..+..+. ......... . .......+|||||+|.+. .+.+..|++.+
T Consensus 90 ~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~ 168 (412)
T 1w5s_A 90 AYVNAFNAPNLYTILSLIVRQTG-YPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVH 168 (412)
T ss_dssp EEEEGGGCCSHHHHHHHHHHHHT-CCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC-CCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHH
Confidence 666653322222211 1111110 000000000 0 000134599999999984 35566667777
Q ss_pred hhcc-----CCccEEEEecCCc---ccc---ccccCCe-eeEEecCCCHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHH
Q psy17903 162 EKET-----KSTRFCLICNYVS---CII---QPLTSRC-SKFRFKPLAENTMLTRLQYICEQES--VMCDFKALETLVET 227 (355)
Q Consensus 162 e~~~-----~~~~~Il~~~~~~---~l~---~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~l~~~ 227 (355)
++.+ ..+.+|++++... .+. +.+.++. ..+.|++++.+++.+++...+...+ ..+++++++.+++.
T Consensus 169 ~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 248 (412)
T 1w5s_A 169 EEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDV 248 (412)
T ss_dssp HHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHH
T ss_pred HhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 6543 4566777776543 223 4444543 2499999999999999998876533 35789999999999
Q ss_pred cC------CCHHHHHHHHHHHHHhh---CCCCCCHHHHHHHhCC
Q psy17903 228 SG------GDMRRAITCLQSCARLK---GGEGIVNEDVLEVTGV 262 (355)
Q Consensus 228 ~~------g~~r~~~~~l~~~~~~~---~~~~It~~~v~~~~~~ 262 (355)
++ |+++.+.+.++.+...+ +...++.+++..++..
T Consensus 249 ~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 249 YGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp HCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99 99999999988765443 3457888888876643
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.67 E-value=8.3e-17 Score=164.17 Aligned_cols=186 Identities=18% Similarity=0.258 Sum_probs=138.7
Q ss_pred CcccccHHHHHHHHHHHhcCC--------C-CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHH
Q psy17903 45 DDVIEQQEVVSVLKKCLSGAD--------L-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRD 115 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~~--------~-~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 115 (355)
+.++|++.++..+...+.... . .+++|+||+|||||++|+++++.+.+.. .+++.++++..........
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~--~~~i~i~~~~~~~~~~~s~ 635 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--EAMIRIDMTEYMEKHAVSR 635 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG--GGEEEECTTTCCSSGGGGG
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--CcEEEEechhccchhHHHH
Confidence 468999999999888875421 1 2499999999999999999999986643 3677888875432211110
Q ss_pred H---------------HHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCcc
Q psy17903 116 K---------------VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTR 169 (355)
Q Consensus 116 ~---------------i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~ 169 (355)
. +...... ..+.+|||||++.+.++.++.|+.+|+++. .+++
T Consensus 636 l~g~~~~~~G~~~~g~l~~~~~~------------~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~i 703 (854)
T 1qvr_A 636 LIGAPPGYVGYEEGGQLTEAVRR------------RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTV 703 (854)
T ss_dssp C--------------CHHHHHHH------------CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEE
T ss_pred HcCCCCCCcCccccchHHHHHHh------------CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeE
Confidence 0 0010000 134699999999999999999999999763 3567
Q ss_pred EEEEecCC--------------------------ccccccccCCe-eeEEecCCCHHHHHHHHHHHHHHc---------C
Q psy17903 170 FCLICNYV--------------------------SCIIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQE---------S 213 (355)
Q Consensus 170 ~Il~~~~~--------------------------~~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~---------~ 213 (355)
+|++||.. ..+.+.+.+|+ ..+.|.|++.+++..++...+... .
T Consensus 704 iI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~ 783 (854)
T 1qvr_A 704 IILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRIS 783 (854)
T ss_dssp EEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCE
T ss_pred EEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCce
Confidence 89999861 23557788898 578899999999999988776631 3
Q ss_pred CCCCHHHHHHHHHHc---CCCHHHHHHHHHHHHH
Q psy17903 214 VMCDFKALETLVETS---GGDMRRAITCLQSCAR 244 (355)
Q Consensus 214 ~~~~~~~~~~l~~~~---~g~~r~~~~~l~~~~~ 244 (355)
+.+++++++.|++.+ +||+|.+.+.+++...
T Consensus 784 ~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 784 LELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp EEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred EEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 468999999999875 5999999999988654
No 73
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.63 E-value=1.1e-15 Score=141.05 Aligned_cols=205 Identities=18% Similarity=0.199 Sum_probs=132.9
Q ss_pred cccccHHHHHHHHHHHh-------------cC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccch
Q psy17903 46 DVIEQQEVVSVLKKCLS-------------GA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGI 110 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~-------------~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~ 110 (355)
.++|++.+++.+...+. .. ...++||+||||||||++|+++++.+ +.+++.++++.....
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~-----~~~~~~~~~~~l~~~ 90 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL-----DVPFTMADATTLTEA 90 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT-----TCCEEEEEHHHHTTC
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc-----CCCEEEechHHhccc
Confidence 36899999999988872 11 22349999999999999999999998 345677776543211
Q ss_pred H----HHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHhhhc--------
Q psy17903 111 Q----VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTMEKE-------- 164 (355)
Q Consensus 111 ~----~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~~le~~-------- 164 (355)
. .....+............ .+...+|||||+|.+... .++.|++.|+..
T Consensus 91 ~~~g~~~~~~~~~~~~~~~~~~~-----~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~ 165 (363)
T 3hws_A 91 GYVGEDVENIIQKLLQKCDYDVQ-----KAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQG 165 (363)
T ss_dssp HHHHHHHTHHHHHHHHHTTTCHH-----HHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------
T ss_pred ccccccHHHHHHHHHHHhhhhHH-----hcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCcc
Confidence 1 111111111111000000 002249999999988765 799999999821
Q ss_pred -------------cCCccEEEEecCC----------cc-----------------------------------ccccccC
Q psy17903 165 -------------TKSTRFCLICNYV----------SC-----------------------------------IIQPLTS 186 (355)
Q Consensus 165 -------------~~~~~~Il~~~~~----------~~-----------------------------------l~~~l~s 186 (355)
..+..||++++.. .+ +.+.+.+
T Consensus 166 ~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~ 245 (363)
T 3hws_A 166 GRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG 245 (363)
T ss_dssp --------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT
T ss_pred ccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc
Confidence 1234556665531 11 5678889
Q ss_pred Cee-eEEecCCCHHHHHHHHHH----HH-------HHcC--CCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHHhh---
Q psy17903 187 RCS-KFRFKPLAENTMLTRLQY----IC-------EQES--VMCDFKALETLVET---SGGDMRRAITCLQSCARLK--- 246 (355)
Q Consensus 187 r~~-~i~~~~~~~~~~~~~l~~----~~-------~~~~--~~~~~~~~~~l~~~---~~g~~r~~~~~l~~~~~~~--- 246 (355)
|+. .+.|.+++.+++.+++.. .. ...+ +.+++++++.|++. .+++.|.+.+.++++....
T Consensus 246 R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~ 325 (363)
T 3hws_A 246 RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYD 325 (363)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHS
T ss_pred ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHh
Confidence 988 556999999999888775 22 2123 45799999999864 3788899999998876533
Q ss_pred --CC-C----CCCHHHHHHHh
Q psy17903 247 --GG-E----GIVNEDVLEVT 260 (355)
Q Consensus 247 --~~-~----~It~~~v~~~~ 260 (355)
.. . .||.+.|++..
T Consensus 326 ~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 326 LPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp TTTCCCSEEEECHHHHTTCCS
T ss_pred cccccCCceeEEcHHHHhCcC
Confidence 12 1 36666666544
No 74
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.62 E-value=8.8e-15 Score=139.31 Aligned_cols=211 Identities=12% Similarity=0.108 Sum_probs=133.8
Q ss_pred CcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHH--HHHHHH
Q psy17903 45 DDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDK--VKTFAQ 122 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~--i~~~~~ 122 (355)
..++|++++++.+...+..+. ++||+||||||||++|+++++.+... ..+...++... ....+... ......
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~--~VLL~GpPGtGKT~LAraLa~~l~~~---~~f~~~~~~~~-t~~dL~G~~~~~~~~~ 95 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE--SVFLLGPPGIAKSLIARRLKFAFQNA---RAFEYLMTRFS-TPEEVFGPLSIQALKD 95 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC--EEEEECCSSSSHHHHHHHGGGGBSSC---CEEEEECCTTC-CHHHHHCCBC------
T ss_pred hhhHHHHHHHHHHHHHHhcCC--eeEeecCchHHHHHHHHHHHHHHhhh---hHHHHHHHhcC-CHHHhcCcccHHHHhh
Confidence 358899999999988887663 79999999999999999999987432 12333333221 11221110 000000
Q ss_pred hhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc----------CCccEEEEecCCcc---ccccccCCee
Q psy17903 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET----------KSTRFCLICNYVSC---IIQPLTSRCS 189 (355)
Q Consensus 123 ~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~----------~~~~~Il~~~~~~~---l~~~l~sr~~ 189 (355)
.+.......+ ......++||||++.+++..++.|+..|++.. +...+|++||.... ..+++.+|+.
T Consensus 96 ~g~~~~~~~g-~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~ 174 (500)
T 3nbx_X 96 EGRYERLTSG-YLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRML 174 (500)
T ss_dssp ----CBCCTT-SGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCC
T ss_pred chhHHhhhcc-CCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHH
Confidence 0000000011 00012389999999999999999999997532 11234778875332 4468888875
Q ss_pred -eEEecCCCH-HHHHHHHHHHHH-----------------------HcCCCCCHHHHHHHHHHc----------CCCHHH
Q psy17903 190 -KFRFKPLAE-NTMLTRLQYICE-----------------------QESVMCDFKALETLVETS----------GGDMRR 234 (355)
Q Consensus 190 -~i~~~~~~~-~~~~~~l~~~~~-----------------------~~~~~~~~~~~~~l~~~~----------~g~~r~ 234 (355)
.+.+++|+. ++...++..... -.++.+++++++++++.. +.+.|.
T Consensus 175 ~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~ 254 (500)
T 3nbx_X 175 IRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDKLPDAPYVSDRR 254 (500)
T ss_dssp EEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHHCSSSCCCCHHH
T ss_pred HHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhcCCCCCccchhH
Confidence 588888887 566666654321 136778999999888765 558888
Q ss_pred HHHHHHHH---HHhhCCCCCCHHHHHHHhCCC
Q psy17903 235 AITCLQSC---ARLKGGEGIVNEDVLEVTGVI 263 (355)
Q Consensus 235 ~~~~l~~~---~~~~~~~~It~~~v~~~~~~~ 263 (355)
+...+..+ +.+.+...|+.+|+. ++...
T Consensus 255 ~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~v 285 (500)
T 3nbx_X 255 WKKAIRLLQASAFFSGRSAVAPVDLI-LLKDC 285 (500)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGT
T ss_pred HHHHHHHHHHHHhhcCCccccchHHH-HHHhh
Confidence 76666544 334467789999998 55443
No 75
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.62 E-value=3e-15 Score=149.04 Aligned_cols=173 Identities=20% Similarity=0.227 Sum_probs=122.7
Q ss_pred CCCCCcccccHHHHHHHHHHHhc-----------C-CCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCLSG-----------A-DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l~~-----------~-~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
..+|+++.|.+++++.|++.+.- + ..| ++|||||||||||++|+++++++ +.+++.+++++.
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el-----g~~~~~v~~~~l 274 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLINGPEI 274 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT-----TCEEEEEEHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh-----CCeEEEEEhHHh
Confidence 35799999999999999887631 1 223 39999999999999999999997 446777776542
Q ss_pred cc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhhhc--cCCc
Q psy17903 108 RG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEKE--TKST 168 (355)
Q Consensus 108 ~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~--~~~~ 168 (355)
.+ ...++..+...... ..-||||||+|.+.+ ...+.|+..|+.. ..++
T Consensus 275 ~sk~~gese~~lr~lF~~A~~~-------------~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V 341 (806)
T 3cf2_A 275 MSKLAGESESNLRKAFEEAEKN-------------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHV 341 (806)
T ss_dssp HSSCTTHHHHHHHHHHHHHTTS-------------CSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCE
T ss_pred hcccchHHHHHHHHHHHHHHHc-------------CCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCE
Confidence 21 12333333332211 123999999999853 2345677777643 3457
Q ss_pred cEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCH
Q psy17903 169 RFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDM 232 (355)
Q Consensus 169 ~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~ 232 (355)
++|.+||.++.+.+++++ |+. .|+++.|+.++..++++.+++..... ++..+..++..+.|-.
T Consensus 342 ~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~Gfs 407 (806)
T 3cf2_A 342 IVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHV 407 (806)
T ss_dssp EEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCC
T ss_pred EEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCC
Confidence 788899999999999998 554 79999999999999999776543222 2234777888887643
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.59 E-value=7.8e-14 Score=123.38 Aligned_cols=212 Identities=15% Similarity=0.133 Sum_probs=126.8
Q ss_pred CCCCCcccccHHHHHHHHHHHh------------cCCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCLS------------GADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l~------------~~~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
..+|+++.|.+++++.|.+.+. +-..+ +++|+||+|+|||+++++++..+. ..++.+++.+.
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~-----~~~i~i~g~~l 80 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESG-----LNFISVKGPEL 80 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTT-----CEEEEEETTTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcC-----CCEEEEEcHHH
Confidence 4579999999999999887542 11222 399999999999999999999873 24677776653
Q ss_pred cc--hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH-----------HHHHHHHHhhhc--cCCccEEE
Q psy17903 108 RG--IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA-----------AQAALRRTMEKE--TKSTRFCL 172 (355)
Q Consensus 108 ~~--~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~-----------~~~~Ll~~le~~--~~~~~~Il 172 (355)
.. .......+.......... ...++++||++.+... ..+.++..|... ...++++.
T Consensus 81 ~~~~~~~~~~~i~~vf~~a~~~---------~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia 151 (274)
T 2x8a_A 81 LNMYVGESERAVRQVFQRAKNS---------APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMA 151 (274)
T ss_dssp CSSTTHHHHHHHHHHHHHHHHT---------CSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEE
T ss_pred HhhhhhHHHHHHHHHHHHHHhc---------CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEe
Confidence 22 122222222221111000 1238999999987421 234455555432 23456677
Q ss_pred EecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHH--cCC-CHHHHHHHHHHHHH
Q psy17903 173 ICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQE-SVMCD-FKALETLVET--SGG-DMRRAITCLQSCAR 244 (355)
Q Consensus 173 ~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~-~~~~~-~~~~~~l~~~--~~g-~~r~~~~~l~~~~~ 244 (355)
++|.++.+++++.+ |+. .+.++.|+.++..++++.+++.. ...++ +..+..++.. +.| +...+.+.++.++.
T Consensus 152 ~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~ 231 (274)
T 2x8a_A 152 ATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASI 231 (274)
T ss_dssp EESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHH
T ss_pred ecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHH
Confidence 88899999999987 554 78999999999999999887542 22222 2235556653 223 23333333333322
Q ss_pred hh--------------CCCCCCHHHHHHHhCCCChH
Q psy17903 245 LK--------------GGEGIVNEDVLEVTGVIPNP 266 (355)
Q Consensus 245 ~~--------------~~~~It~~~v~~~~~~~~~~ 266 (355)
.+ +...|+.+|+.+++....++
T Consensus 232 ~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 232 CALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp HHHHHHC-----------CCBCHHHHHHHHTTCCCC
T ss_pred HHHHHHHhhccccccccCCeecHHHHHHHHHHhcCC
Confidence 11 12368999999998877654
No 77
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.59 E-value=2.3e-14 Score=133.11 Aligned_cols=212 Identities=16% Similarity=0.150 Sum_probs=141.9
Q ss_pred CCcccccHHHHHHHHHHHhcCCC--CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHH
Q psy17903 44 IDDVIEQQEVVSVLKKCLSGADL--PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFA 121 (355)
Q Consensus 44 ~~~~vg~~~~~~~l~~~l~~~~~--~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~ 121 (355)
++.++|.+..+..+.+.+..-.. .+++|+|++|+||+++|++++...... ..+++.+||+... .+.+...+....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~--~~~fv~v~~~~~~-~~~~~~elfg~~ 212 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS--KEPFVALNVASIP-RDIFEAELFGYE 212 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT--TSCEEEEETTTSC-HHHHHHHHHCBC
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC--CCCeEEEecCCCC-HHHHHHHhcCCC
Confidence 55788888777777766654221 239999999999999999999875432 3478899988632 222221111111
Q ss_pred HhhccCCCCCCCCC----CCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------cc
Q psy17903 122 QQTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SC 179 (355)
Q Consensus 122 ~~~~~~~~~~~~~~----~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~ 179 (355)
.....+... .++. +++++||+||++.|+.+.|..|+++|++.. .++++|++||.. ..
T Consensus 213 ~g~~tga~~-~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~ 291 (387)
T 1ny5_A 213 KGAFTGAVS-SKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGK 291 (387)
T ss_dssp TTSSTTCCS-CBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTS
T ss_pred CCCCCCccc-ccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCC
Confidence 111111000 0111 355699999999999999999999998632 367899988853 22
Q ss_pred ccccccCCee--eEEecCCCH--HHHHHHHHHHHH----HcCC---CCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhC
Q psy17903 180 IIQPLTSRCS--KFRFKPLAE--NTMLTRLQYICE----QESV---MCDFKALETLVETS-GGDMRRAITCLQSCARLKG 247 (355)
Q Consensus 180 l~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~~----~~~~---~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~ 247 (355)
+.+.+..|.. .++++|+.+ +++..++...+. +.+. .+++++++.|..+. +||+|.+.|.++.++..+.
T Consensus 292 fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~~ 371 (387)
T 1ny5_A 292 FREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFSE 371 (387)
T ss_dssp SCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCC
Confidence 3344444443 566666654 666655554443 3343 47899999998765 9999999999999998887
Q ss_pred CCCCCHHHHHHH
Q psy17903 248 GEGIVNEDVLEV 259 (355)
Q Consensus 248 ~~~It~~~v~~~ 259 (355)
+..|+.+++...
T Consensus 372 ~~~i~~~~l~~~ 383 (387)
T 1ny5_A 372 GKFIDRGELSCL 383 (387)
T ss_dssp SSEECHHHHHHH
T ss_pred CCcCcHHHCcHh
Confidence 778998887543
No 78
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.58 E-value=4.3e-14 Score=131.84 Aligned_cols=127 Identities=20% Similarity=0.208 Sum_probs=92.8
Q ss_pred cEEEEEeCCCCCCH------------HHHHHHHHHhhhc----------cCCccEEEEe----cCCccccccccCCeee-
Q psy17903 138 FKIVILDEADSMTH------------AAQAALRRTMEKE----------TKSTRFCLIC----NYVSCIIQPLTSRCSK- 190 (355)
Q Consensus 138 ~~vliiDe~d~l~~------------~~~~~Ll~~le~~----------~~~~~~Il~~----~~~~~l~~~l~sr~~~- 190 (355)
..++++||+|.+.. ..|++|++.||.. ..++.||+++ ..+..++|.+.+|+.+
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~ 330 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 330 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhccccee
Confidence 45899999998853 2678999999852 3456677776 2444477999999985
Q ss_pred EEecCCCHHHHHHHHH-----------HHHHHcC--CCCCHHHHHHHHHH--------cCCCHHHHHHHHHHHHHhh---
Q psy17903 191 FRFKPLAENTMLTRLQ-----------YICEQES--VMCDFKALETLVET--------SGGDMRRAITCLQSCARLK--- 246 (355)
Q Consensus 191 i~~~~~~~~~~~~~l~-----------~~~~~~~--~~~~~~~~~~l~~~--------~~g~~r~~~~~l~~~~~~~--- 246 (355)
+.|++++.+++..++. ..+..++ +.++++++..|++. -+...|.+.+.++++....
T Consensus 331 i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~ 410 (444)
T 1g41_A 331 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 410 (444)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhh
Confidence 8999999999999983 1222234 46899999999985 3588888888888766432
Q ss_pred --C--CC--CCCHHHHHHHhCCCC
Q psy17903 247 --G--GE--GIVNEDVLEVTGVIP 264 (355)
Q Consensus 247 --~--~~--~It~~~v~~~~~~~~ 264 (355)
. .. .||.+.|.+.++...
T Consensus 411 ~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 411 ASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp GGGCTTCEEEECHHHHHHHHTTTT
T ss_pred ccccCCCeEEEeHHHHHHhcCccc
Confidence 1 11 378888888776553
No 79
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.57 E-value=6.6e-15 Score=117.65 Aligned_cols=132 Identities=17% Similarity=0.186 Sum_probs=91.2
Q ss_pred cccccHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHh
Q psy17903 46 DVIEQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ 123 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 123 (355)
+++|++..+..+.+.++. ....+++|+||+|||||++|+++++..... ..+++ +++............+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~--~~~~v-~~~~~~~~~~~~~~~~~~a--- 75 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA--QGEFV-YRELTPDNAPQLNDFIALA--- 75 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT--TSCCE-EEECCTTTSSCHHHHHHHH---
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc--CCCEE-EECCCCCcchhhhcHHHHc---
Confidence 688999999888887753 223359999999999999999999876432 23566 7776543322222222221
Q ss_pred hccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCc-------cccccccCCee--eEEec
Q psy17903 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS-------CIIQPLTSRCS--KFRFK 194 (355)
Q Consensus 124 ~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~-------~l~~~l~sr~~--~i~~~ 194 (355)
+..+|||||+|.++.+.|..|+..|+....++++|++||... .+.+.+..|+. .++++
T Consensus 76 -------------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~i~lP 142 (145)
T 3n70_A 76 -------------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQIACL 142 (145)
T ss_dssp -------------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHEEECC
T ss_pred -------------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCEEeCC
Confidence 123899999999999999999999988788899999998642 23445555543 45665
Q ss_pred CC
Q psy17903 195 PL 196 (355)
Q Consensus 195 ~~ 196 (355)
|+
T Consensus 143 pL 144 (145)
T 3n70_A 143 PL 144 (145)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 80
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.56 E-value=1.5e-14 Score=133.36 Aligned_cols=203 Identities=18% Similarity=0.186 Sum_probs=136.0
Q ss_pred CcccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHH
Q psy17903 45 DDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ 122 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~ 122 (355)
..++|++..+..+...+... ....++++|++|+||+.+|+.+++...... .++.+||..... +.+...+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~---~fv~vnc~~~~~-~~~~~~lfg~~~ 204 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKG---AFVDLNCASIPQ-ELAESELFGHEK 204 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCS---CEEEEESSSSCT-TTHHHHHHEECS
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccC---CcEEEEcccCCh-HHHHHHhcCccc
Confidence 35788887777666655321 223499999999999999999998864432 388999986422 222111111110
Q ss_pred hhccCCCCCCCCC----CCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-----------CCccEEEEecCC-------ccc
Q psy17903 123 QTASGFNQDGKPC----PPFKIVILDEADSMTHAAQAALRRTMEKET-----------KSTRFCLICNYV-------SCI 180 (355)
Q Consensus 123 ~~~~~~~~~~~~~----~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-----------~~~~~Il~~~~~-------~~l 180 (355)
....+.. ..++. +++++||+||++.|+.+.|..|+++|++.. .++++|.+||.. ..+
T Consensus 205 g~~tga~-~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~f 283 (368)
T 3dzd_A 205 GAFTGAL-TRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNF 283 (368)
T ss_dssp CSSSSCC-CCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSS
T ss_pred cccCCcc-cccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCc
Confidence 0111000 00000 345699999999999999999999998642 357789988854 234
Q ss_pred cccccCCee--eEEecCCCH--HHHHHHHHHHHH----HcC---CCCCHHHHHHHHHHc-CCCHHHHHHHHHHHHHhhCC
Q psy17903 181 IQPLTSRCS--KFRFKPLAE--NTMLTRLQYICE----QES---VMCDFKALETLVETS-GGDMRRAITCLQSCARLKGG 248 (355)
Q Consensus 181 ~~~l~sr~~--~i~~~~~~~--~~~~~~l~~~~~----~~~---~~~~~~~~~~l~~~~-~g~~r~~~~~l~~~~~~~~~ 248 (355)
.+.|..|+. .++++|+.+ +++..++...+. +.+ ..+++++++.|..+. +||+|++.|.++.++..+.+
T Consensus 284 r~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~~~~~~ 363 (368)
T 3dzd_A 284 REDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIERAVILCEG 363 (368)
T ss_dssp CHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHHHTCCS
T ss_pred cHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhCCC
Confidence 455666665 566888876 677666555543 333 458999999999875 99999999999999887766
Q ss_pred CCCC
Q psy17903 249 EGIV 252 (355)
Q Consensus 249 ~~It 252 (355)
+.|+
T Consensus 364 ~~i~ 367 (368)
T 3dzd_A 364 EVIK 367 (368)
T ss_dssp SBCC
T ss_pred CccC
Confidence 6554
No 81
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.55 E-value=5.4e-15 Score=147.19 Aligned_cols=180 Identities=20% Similarity=0.233 Sum_probs=111.6
Q ss_pred CCCCCcccccHHHHHHHHHHHhc-----------CC-CC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc
Q psy17903 41 PKTIDDVIEQQEVVSVLKKCLSG-----------AD-LP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD 107 (355)
Q Consensus 41 p~~~~~~vg~~~~~~~l~~~l~~-----------~~-~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~ 107 (355)
..+|+++.|.+++++.|.+.+.- +. .+ ++|||||||||||.+|++++.++ +.+++.+++++.
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~-----~~~f~~v~~~~l 547 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC-----QANFISIKGPEL 547 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT-----TCEEEECCHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh-----CCceEEeccchh
Confidence 34799999999999999887631 22 22 29999999999999999999998 445666655432
Q ss_pred ------cchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH--------------HHHHHHHHhhhc--c
Q psy17903 108 ------RGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--------------AQAALRRTMEKE--T 165 (355)
Q Consensus 108 ------~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--------------~~~~Ll~~le~~--~ 165 (355)
.+...++..+....... | -||||||+|.+... ..+.|+..|+.. .
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~~---------P----~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~ 614 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQAA---------P----CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK 614 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTTC---------S----EEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS
T ss_pred hccccchHHHHHHHHHHHHHHcC---------C----ceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC
Confidence 12234555554433221 1 29999999998532 246677777743 3
Q ss_pred CCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHH
Q psy17903 166 KSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETS----GGDMRRAITC 238 (355)
Q Consensus 166 ~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~----~g~~r~~~~~ 238 (355)
.++++|.+||.++.+++++.+ |+. .++|+.|+.++..++++.++++..+. ++..++.|++.+ +.|+..+.+.
T Consensus 615 ~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~ 693 (806)
T 3cf2_A 615 KNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQR 693 (806)
T ss_dssp SSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHH
T ss_pred CCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHH
Confidence 456777789999999999988 665 79999999999999998777544332 122356666654 4566665544
Q ss_pred H
Q psy17903 239 L 239 (355)
Q Consensus 239 l 239 (355)
.
T Consensus 694 A 694 (806)
T 3cf2_A 694 A 694 (806)
T ss_dssp H
T ss_pred H
Confidence 3
No 82
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.54 E-value=1.5e-13 Score=122.90 Aligned_cols=149 Identities=15% Similarity=0.233 Sum_probs=94.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEE
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vl 141 (355)
.+|||||||||||++|+++++.+ +.+++.+++++... ...++..+........ .. ...||
T Consensus 38 ~lLl~GppGtGKT~la~aiA~~l-----~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~-----~~----~~~vl 103 (293)
T 3t15_A 38 ILGIWGGKGQGKSFQCELVFRKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIR-----KG----NMCCL 103 (293)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH-----TCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHT-----TS----SCCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-----CCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHh-----cC----CCeEE
Confidence 39999999999999999999998 34566666543211 1223333333211100 11 12399
Q ss_pred EEeCCCCCCH-------------HHHHHHHHHhhh-------------ccCCccEEEEecCCccccccccC--CeeeEEe
Q psy17903 142 ILDEADSMTH-------------AAQAALRRTMEK-------------ETKSTRFCLICNYVSCIIQPLTS--RCSKFRF 193 (355)
Q Consensus 142 iiDe~d~l~~-------------~~~~~Ll~~le~-------------~~~~~~~Il~~~~~~~l~~~l~s--r~~~i~~ 193 (355)
+|||+|.+.+ ..++.|+..|+. ...++++|++||.++.+.+++++ |+..+.+
T Consensus 104 ~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~ 183 (293)
T 3t15_A 104 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW 183 (293)
T ss_dssp EEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE
T ss_pred EEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe
Confidence 9999998865 134778888762 23468899999999999999986 5543333
Q ss_pred cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc-CCCHH
Q psy17903 194 KPLAENTMLTRLQYICEQESVMCDFKALETLVETS-GGDMR 233 (355)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~r 233 (355)
.|+.++..++++.++...+ ++.+.+..+.... +.++.
T Consensus 184 -~P~~~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 184 -APTREDRIGVCTGIFRTDN--VPAEDVVKIVDNFPGQSID 221 (293)
T ss_dssp -CCCHHHHHHHHHHHHGGGC--CCHHHHHHHHHHSCSCCHH
T ss_pred -CcCHHHHHHHHHHhccCCC--CCHHHHHHHhCCCCcccHH
Confidence 5699999999998887654 4566666665544 44553
No 83
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=1.3e-14 Score=141.58 Aligned_cols=209 Identities=17% Similarity=0.131 Sum_probs=129.4
Q ss_pred CcccccHHHHHHHHHHHhcCCCC-----------eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHH
Q psy17903 45 DDVIEQQEVVSVLKKCLSGADLP-----------HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVI 113 (355)
Q Consensus 45 ~~~vg~~~~~~~l~~~l~~~~~~-----------~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i 113 (355)
..++|++.++..+.-.+.++... |+||+||||||||++|+++++.+....+.... ..++.+..+.. .
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~-~~~~~~l~~~~-~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGK-GSTAAGLTAAV-V 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTT-CSTTTTSEEEC-S
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCC-cccccccccee-e
Confidence 46889999988887777666311 69999999999999999999887432211000 01111110000 0
Q ss_pred HHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhcc-------------CCccEEEEecCCc--
Q psy17903 114 RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET-------------KSTRFCLICNYVS-- 178 (355)
Q Consensus 114 ~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~-------------~~~~~Il~~~~~~-- 178 (355)
... + .............+++.+++|||+|.+.++.++.|+..|++.. ..+.+|.++|...
T Consensus 373 ~~~---~--~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~ 447 (595)
T 3f9v_A 373 REK---G--TGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGR 447 (595)
T ss_dssp SGG---G--TSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCC
T ss_pred ecc---c--cccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCc
Confidence 000 0 0000000000000123499999999999999999999998642 3567888888764
Q ss_pred -----------cccccccCCee-eEEecCCCHHHHHHHHHHHHHHc-------------------------CCCCCHHHH
Q psy17903 179 -----------CIIQPLTSRCS-KFRFKPLAENTMLTRLQYICEQE-------------------------SVMCDFKAL 221 (355)
Q Consensus 179 -----------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~-------------------------~~~~~~~~~ 221 (355)
.+.+++.+|+. .+.+.+++..+...+.+++.... ...+++++.
T Consensus 448 ~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~ 527 (595)
T 3f9v_A 448 YISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAK 527 (595)
T ss_dssp SCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTH
T ss_pred cCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHH
Confidence 78899999994 45555555444444444444321 225666677
Q ss_pred HHHHHH---------------cCCCHHHHHHHHHHHHH---hhCCCCCCHHHHHHHh
Q psy17903 222 ETLVET---------------SGGDMRRAITCLQSCAR---LKGGEGIVNEDVLEVT 260 (355)
Q Consensus 222 ~~l~~~---------------~~g~~r~~~~~l~~~~~---~~~~~~It~~~v~~~~ 260 (355)
+.|.+. .++++|.+.+.++.+.. +.+...|+.+|+.+++
T Consensus 528 ~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai 584 (595)
T 3f9v_A 528 NLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAI 584 (595)
T ss_dssp HHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHH
Confidence 777765 46788887777765533 3367789999998876
No 84
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.49 E-value=2e-12 Score=118.18 Aligned_cols=177 Identities=17% Similarity=0.152 Sum_probs=121.2
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCcc------chHHHHHH
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR------GIQVIRDK 116 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~ 116 (355)
..+.++|++..++.|.+++..+ +.++|+||+|+|||++++.+++... .+.+++.... ....+...
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 80 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP-------GILIDCRELYAERGHITREELIKE 80 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS-------EEEEEHHHHHHTTTCBCHHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC-------cEEEEeecccccccCCCHHHHHHH
Confidence 3467999999999999999875 5699999999999999999998851 3333332111 11111111
Q ss_pred ---------------------------------------HHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH------
Q psy17903 117 ---------------------------------------VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH------ 151 (355)
Q Consensus 117 ---------------------------------------i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~------ 151 (355)
+....... +..+|||||++.+..
T Consensus 81 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------------~~~vlvlDe~~~~~~~~~~~~ 148 (350)
T 2qen_A 81 LQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEEL------------GEFIVAFDEAQYLRFYGSRGG 148 (350)
T ss_dssp HHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHH------------SCEEEEEETGGGGGGBTTTTT
T ss_pred HHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhcc------------CCEEEEEeCHHHHhccCccch
Confidence 11111000 134899999999863
Q ss_pred -HHHHHHHHHhhhccCCccEEEEecCCc---c------ccccccCCe-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHH
Q psy17903 152 -AAQAALRRTMEKETKSTRFCLICNYVS---C------IIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKA 220 (355)
Q Consensus 152 -~~~~~Ll~~le~~~~~~~~Il~~~~~~---~------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 220 (355)
+....|...++.. .++.+|+++.... . ...++..|. ..+.+.+++.++..+++...+...+..++++.
T Consensus 149 ~~~~~~L~~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~ 227 (350)
T 2qen_A 149 KELLALFAYAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENE 227 (350)
T ss_dssp HHHHHHHHHHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHH
T ss_pred hhHHHHHHHHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHH
Confidence 3445555555543 4677777775431 1 122344343 48999999999999999988887788899999
Q ss_pred HHHHHHHcCCCHHHHHHHHHH
Q psy17903 221 LETLVETSGGDMRRAITCLQS 241 (355)
Q Consensus 221 ~~~l~~~~~g~~r~~~~~l~~ 241 (355)
+..+...++|++..+......
T Consensus 228 ~~~i~~~tgG~P~~l~~~~~~ 248 (350)
T 2qen_A 228 IEEAVELLDGIPGWLVVFGVE 248 (350)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999876665544
No 85
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.47 E-value=8.7e-14 Score=110.82 Aligned_cols=128 Identities=10% Similarity=0.123 Sum_probs=86.7
Q ss_pred cccccHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHh
Q psy17903 46 DVIEQQEVVSVLKKCLSG--ADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ 123 (355)
Q Consensus 46 ~~vg~~~~~~~l~~~l~~--~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 123 (355)
+++|++..++.+.+.+.. ....+++|+||+|||||++|+++++... +++.+++..... ......+. .
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~------~~~~~~~~~~~~-~~~~~~~~----~ 73 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT------PWVSPARVEYLI-DMPMELLQ----K 73 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS------CEECCSSTTHHH-HCHHHHHH----H
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC------CeEEechhhCCh-HhhhhHHH----h
Confidence 578999998888877753 2334599999999999999999988752 678888876321 11111111 1
Q ss_pred hccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc-cCCccEEEEecCC-cc----ccccccCCee--eEEecC
Q psy17903 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE-TKSTRFCLICNYV-SC----IIQPLTSRCS--KFRFKP 195 (355)
Q Consensus 124 ~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~-~~----l~~~l~sr~~--~i~~~~ 195 (355)
. +..+|||||+|.++.+.|..|++.+++. ..++++|++||.. .. +.+.+..|.. .++++|
T Consensus 74 a------------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 74 A------------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp T------------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECC
T ss_pred C------------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCC
Confidence 1 2239999999999999999999999876 3567888888854 32 2334444433 456655
Q ss_pred C
Q psy17903 196 L 196 (355)
Q Consensus 196 ~ 196 (355)
+
T Consensus 142 L 142 (143)
T 3co5_A 142 L 142 (143)
T ss_dssp C
T ss_pred C
Confidence 4
No 86
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.41 E-value=1.5e-12 Score=131.52 Aligned_cols=180 Identities=19% Similarity=0.205 Sum_probs=123.6
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHhc------------CCC-CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC
Q psy17903 38 KYRPKTIDDVIEQQEVVSVLKKCLSG------------ADL-PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (355)
Q Consensus 38 k~~p~~~~~~vg~~~~~~~l~~~l~~------------~~~-~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 104 (355)
.+.+.+|++++|++.+++.|.+++.. ... .+++|+||||||||++|++++..+ +..++.+++
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l-----~~~~i~v~~ 271 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----GAFFFLING 271 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT-----TCEEEEEEH
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc-----CCcEEEEEc
Confidence 45667899999999999999888753 122 249999999999999999999987 335667776
Q ss_pred CCccc------hHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH-----------HHHHHHHHHhhhc--c
Q psy17903 105 SDDRG------IQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH-----------AAQAALRRTMEKE--T 165 (355)
Q Consensus 105 ~~~~~------~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~-----------~~~~~Ll~~le~~--~ 165 (355)
.+..+ ...+...+...... ...++|+||+|.+.. ..++.|+..++.. .
T Consensus 272 ~~l~~~~~g~~~~~l~~vf~~a~~~-------------~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~ 338 (806)
T 1ypw_A 272 PEIMSKLAGESESNLRKAFEEAEKN-------------APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR 338 (806)
T ss_dssp HHHSSSSTTHHHHHHHHHHHHHHHH-------------CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT
T ss_pred hHhhhhhhhhHHHHHHHHHHHHHhc-------------CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc
Confidence 43211 12223333322221 123999999987753 2356677777643 3
Q ss_pred CCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHH
Q psy17903 166 KSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAI 236 (355)
Q Consensus 166 ~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~ 236 (355)
..+++|+++|.++.+.+++++ |+. .+.+..|+.++..++++..+....+. .+..+..++..+.|..+..+
T Consensus 339 ~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl 411 (806)
T 1ypw_A 339 AHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADL 411 (806)
T ss_dssp SCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHH
T ss_pred ccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHH
Confidence 457788888998889898887 664 68999999999999998776654322 22235667777766654433
No 87
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.40 E-value=6.9e-15 Score=148.49 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=111.0
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHhc-----------C--CCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC
Q psy17903 38 KYRPKTIDDVIEQQEVVSVLKKCLSG-----------A--DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (355)
Q Consensus 38 k~~p~~~~~~vg~~~~~~~l~~~l~~-----------~--~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 104 (355)
.....+|++++|.+.+++.|...+.. + ...+++|+||||||||++|+++++.+.. +++.+++
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~-----~~i~v~~ 544 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA-----NFISIKG 544 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTC-----CCCCCCC
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCC-----CEEEEec
Confidence 33455799999999999999887742 1 1223999999999999999999999843 4555555
Q ss_pred CCcc------chHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--------------HHHHHHHHHhhhc
Q psy17903 105 SDDR------GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH--------------AAQAALRRTMEKE 164 (355)
Q Consensus 105 ~~~~------~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--------------~~~~~Ll~~le~~ 164 (355)
++.. ....++..+....... ..++||||+|.+.. ..++.|+..|+..
T Consensus 545 ~~l~~~~~g~~~~~i~~~f~~a~~~~-------------p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~ 611 (806)
T 1ypw_A 545 PELLTMWFGESEANVREIFDKARQAA-------------PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp SSSTTCCTTTSSHHHHHHHHHHHHHC-------------SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--
T ss_pred hHhhhhhcCccHHHHHHHHHHHHhcC-------------CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcc
Confidence 5421 1123443333332221 12899999998731 2346677777643
Q ss_pred --cCCccEEEEecCCccccccccC--Cee-eEEecCCCHHHHHHHHHHHHHHc
Q psy17903 165 --TKSTRFCLICNYVSCIIQPLTS--RCS-KFRFKPLAENTMLTRLQYICEQE 212 (355)
Q Consensus 165 --~~~~~~Il~~~~~~~l~~~l~s--r~~-~i~~~~~~~~~~~~~l~~~~~~~ 212 (355)
..++++|++||.++.+.+++.+ |+. .+.|+.|+.++...+++.++++.
T Consensus 612 ~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~ 664 (806)
T 1ypw_A 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKS 664 (806)
T ss_dssp ----CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC
T ss_pred cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccC
Confidence 3467888899999999999998 876 89999999999999998877543
No 88
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.35 E-value=2.4e-11 Score=111.27 Aligned_cols=189 Identities=19% Similarity=0.185 Sum_probs=117.9
Q ss_pred CCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc-----cchHHHHHHH
Q psy17903 43 TIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD-----RGIQVIRDKV 117 (355)
Q Consensus 43 ~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-----~~~~~i~~~i 117 (355)
..+.++|++..++.|.+ +.. +.++|+||+|+|||++++.+++.+.. ..+.+++... .....+...+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l 81 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNL-----PYIYLDLRKFEERNYISYKDFLLEL 81 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTC-----CEEEEEGGGGTTCSCCCHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCC-----CEEEEEchhhccccCCCHHHHHHHH
Confidence 34678999999999999 765 57999999999999999999998732 2344444321 1111111111
Q ss_pred HHHHHh-------------hc-----cC----C-----CCCC--------CCCC-CcEEEEEeCCCCCCH----HHHHHH
Q psy17903 118 KTFAQQ-------------TA-----SG----F-----NQDG--------KPCP-PFKIVILDEADSMTH----AAQAAL 157 (355)
Q Consensus 118 ~~~~~~-------------~~-----~~----~-----~~~~--------~~~~-~~~vliiDe~d~l~~----~~~~~L 157 (355)
...... .. .. . .... ...+ +.-+|||||+|.+.. +....|
T Consensus 82 ~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~~~~~l 161 (357)
T 2fna_A 82 QKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPAL 161 (357)
T ss_dssp HHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHH
T ss_pred HHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchhHHHHH
Confidence 111000 00 00 0 0000 0000 234899999999753 233444
Q ss_pred HHHhhhccCCccEEEEecCCc---c------ccccccCCe-eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q psy17903 158 RRTMEKETKSTRFCLICNYVS---C------IIQPLTSRC-SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET 227 (355)
Q Consensus 158 l~~le~~~~~~~~Il~~~~~~---~------l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~ 227 (355)
....+.. .++.+|+++.... . ...++..|. ..+.+.+++.++..+++...+...+...++. ..+...
T Consensus 162 ~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~~ 238 (357)
T 2fna_A 162 AYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYEK 238 (357)
T ss_dssp HHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHHH
T ss_pred HHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHHH
Confidence 4444433 3567787776532 1 112355554 6899999999999999998887667666554 788899
Q ss_pred cCCCHHHHHHHHHHHH
Q psy17903 228 SGGDMRRAITCLQSCA 243 (355)
Q Consensus 228 ~~g~~r~~~~~l~~~~ 243 (355)
++|++..+......+.
T Consensus 239 t~G~P~~l~~~~~~~~ 254 (357)
T 2fna_A 239 IGGIPGWLTYFGFIYL 254 (357)
T ss_dssp HCSCHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHc
Confidence 9999998776665543
No 89
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.31 E-value=2.5e-12 Score=106.45 Aligned_cols=131 Identities=14% Similarity=0.226 Sum_probs=79.9
Q ss_pred ccccCCCCCCcccc----cHHHHHHHHHHHhcCCC---CeEEEECCCCCCHHHHHHHHHHHhc-CCccccceeeecCCCc
Q psy17903 36 VEKYRPKTIDDVIE----QQEVVSVLKKCLSGADL---PHFLFYGPPGTGKTSTMIAACHQLF-GDMYRERILELNASDD 107 (355)
Q Consensus 36 ~~k~~p~~~~~~vg----~~~~~~~l~~~l~~~~~---~~~ll~Gp~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~ 107 (355)
.++|++.+|+++++ +..+++.+.+++.+... ..++|+||+|+|||++++++++.+. .... .++.++..
T Consensus 1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~--~~~~~~~~-- 76 (180)
T 3ec2_A 1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI--RGYFFDTK-- 76 (180)
T ss_dssp CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC--CCCEEEHH--
T ss_pred CchhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC--eEEEEEHH--
Confidence 36899999999986 45666777777765432 3499999999999999999999884 1111 22222221
Q ss_pred cchHHHHHHHH-HHHHhhccCC-CCCCCCCCCcEEEEEeCCC--CCCHHHHHHHHHHhhhcc-CCccEEEEecCCc
Q psy17903 108 RGIQVIRDKVK-TFAQQTASGF-NQDGKPCPPFKIVILDEAD--SMTHAAQAALRRTMEKET-KSTRFCLICNYVS 178 (355)
Q Consensus 108 ~~~~~i~~~i~-~~~~~~~~~~-~~~~~~~~~~~vliiDe~d--~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 178 (355)
.+...+. .+........ ... .+..+|||||++ .+.+..+..|..+++... ....+|++||...
T Consensus 77 ----~~~~~~~~~~~~~~~~~~~~~~----~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 77 ----DLIFRLKHLMDEGKDTKFLKTV----LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp ----HHHHHHHHHHHHTCCSHHHHHH----HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred ----HHHHHHHHHhcCchHHHHHHHh----cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 1111111 1111000000 000 022499999998 566777778888776543 4566788888654
No 90
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=99.19 E-value=3.9e-11 Score=114.01 Aligned_cols=147 Identities=16% Similarity=0.186 Sum_probs=81.7
Q ss_pred CCCCCCCCCCccccccCCCCCCccc-ccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeee
Q psy17903 24 TSGKTRNKPVPWVEKYRPKTIDDVI-EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILEL 102 (355)
Q Consensus 24 ~~~~~~~~~~~~~~k~~p~~~~~~v-g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~ 102 (355)
+|..-+....||.+||||.+|+++- +|..++..+...+..+. ++++|.|++|||||+++..++..+..... ..++.+
T Consensus 3 ~~~~~~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~~-~~il~~ 80 (459)
T 3upu_A 3 SSHHHHHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTGE-TGIILA 80 (459)
T ss_dssp ------------------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTTC-CCEEEE
T ss_pred CCCCCCCccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcCC-ceEEEe
Confidence 4555666778999999999999997 78888888888888765 37999999999999999999998854322 112222
Q ss_pred cCCCccchHHHHHHH-------HHHHHhhccCCC-------CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCc
Q psy17903 103 NASDDRGIQVIRDKV-------KTFAQQTASGFN-------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKST 168 (355)
Q Consensus 103 ~~~~~~~~~~i~~~i-------~~~~~~~~~~~~-------~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~ 168 (355)
+........+++.+ ..+......... .........++|||||++.++...+..|+..+. ...
T Consensus 81 -a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~---~~~ 156 (459)
T 3upu_A 81 -APTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP---PWC 156 (459)
T ss_dssp -ESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC---TTC
T ss_pred -cCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc---CCC
Confidence 22222223333222 111111100000 001111246799999999999988888888875 455
Q ss_pred cEEEEecC
Q psy17903 169 RFCLICNY 176 (355)
Q Consensus 169 ~~Il~~~~ 176 (355)
.++++++.
T Consensus 157 ~~~~vGD~ 164 (459)
T 3upu_A 157 TIIGIGDN 164 (459)
T ss_dssp EEEEEECT
T ss_pred EEEEECCH
Confidence 67777754
No 91
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.10 E-value=2.7e-10 Score=98.83 Aligned_cols=137 Identities=18% Similarity=0.205 Sum_probs=88.0
Q ss_pred HHHHHHHHHhcC-CCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCC
Q psy17903 53 VVSVLKKCLSGA-DLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130 (355)
Q Consensus 53 ~~~~l~~~l~~~-~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 130 (355)
....+..++++. ... +++|+||||||||.++.++++.+.- +-.++.... .+.....
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l------~G~vn~~~~-----------~f~l~~~----- 146 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF------YGCVNWTNE-----------NFPFNDC----- 146 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC------EEECCTTCS-----------SCTTGGG-----
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc------cceeecccc-----------ccccccc-----
Confidence 345677777765 323 4999999999999999999997411 111122110 0000000
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhh--------hcc-----CCccEEEEecC-C----------ccccccccC
Q psy17903 131 DGKPCPPFKIVILDEADSMTHAAQAALRRTME--------KET-----KSTRFCLICNY-V----------SCIIQPLTS 186 (355)
Q Consensus 131 ~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le--------~~~-----~~~~~Il~~~~-~----------~~l~~~l~s 186 (355)
.++++++.||+. +..+.++.+.++++ ... ..+.+|++||. . ....++|++
T Consensus 147 -----~~k~i~l~Ee~~-~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~s 220 (267)
T 1u0j_A 147 -----VDKMVIWWEEGK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQD 220 (267)
T ss_dssp -----SSCSEEEECSCC-EETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHT
T ss_pred -----cccEEEEecccc-chhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhh
Confidence 133466655555 44566677888887 322 45678888885 2 245688999
Q ss_pred CeeeEEec--------CCCHHHHHHHHHHHHHHcCCCCCH
Q psy17903 187 RCSKFRFK--------PLAENTMLTRLQYICEQESVMCDF 218 (355)
Q Consensus 187 r~~~i~~~--------~~~~~~~~~~l~~~~~~~~~~~~~ 218 (355)
||..+.|. +++.+++..++. .++.+..++++
T Consensus 221 R~~~f~F~~~~p~~~~~lt~~~~~~f~~-w~~~~~~~~~~ 259 (267)
T 1u0j_A 221 RMFKFELTRRLDHDFGKVTKQEVKDFFR-WAKDHVVEVEH 259 (267)
T ss_dssp TEEEEECCSCCCTTSCCCCHHHHHHHHH-HHHHTCCCCCC
T ss_pred hEEEEECCCcCCcccCCCCHHHHHHHHH-HHHHcCCCCcc
Confidence 99999998 899999999998 44666666543
No 92
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.08 E-value=1.7e-10 Score=97.10 Aligned_cols=124 Identities=11% Similarity=0.164 Sum_probs=74.1
Q ss_pred cccccCCCCCCcccccH----HHHHHHHHHHhcCCC----CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCC
Q psy17903 35 WVEKYRPKTIDDVIEQQ----EVVSVLKKCLSGADL----PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASD 106 (355)
Q Consensus 35 ~~~k~~p~~~~~~vg~~----~~~~~l~~~l~~~~~----~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~ 106 (355)
+..+|++.+|+++++.+ .+++.+.+++..... .+++|+||+|+|||++++++++.+..... .++.+++.+
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~--~~~~~~~~~ 92 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNV--SSLIVYVPE 92 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTC--CEEEEEHHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC--eEEEEEhHH
Confidence 44567888999999754 355667777765421 46999999999999999999999864332 344444322
Q ss_pred ccchHHH---------HHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCCCCCCHH--HHHHHH-HHhhhc-cCCccEEEE
Q psy17903 107 DRGIQVI---------RDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA--AQAALR-RTMEKE-TKSTRFCLI 173 (355)
Q Consensus 107 ~~~~~~i---------~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~--~~~~Ll-~~le~~-~~~~~~Il~ 173 (355)
. ...+ ...+..+. ...+|||||++..... .+..++ .+++.. .....+|++
T Consensus 93 ~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~t 155 (202)
T 2w58_A 93 L--FRELKHSLQDQTMNEKLDYIK---------------KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFT 155 (202)
T ss_dssp H--HHHHHHC---CCCHHHHHHHH---------------HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEE
T ss_pred H--HHHHHHHhccchHHHHHHHhc---------------CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEE
Confidence 1 0111 01111111 1139999999775433 244344 355433 345678888
Q ss_pred ecCC
Q psy17903 174 CNYV 177 (355)
Q Consensus 174 ~~~~ 177 (355)
+|..
T Consensus 156 sn~~ 159 (202)
T 2w58_A 156 SNFD 159 (202)
T ss_dssp ESSC
T ss_pred cCCC
Confidence 8854
No 93
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.07 E-value=2.1e-09 Score=99.90 Aligned_cols=204 Identities=15% Similarity=0.052 Sum_probs=123.1
Q ss_pred ccccHHHHHHHHHHHhcCC-----CCeEEEECCCCCCHHHHHHHH-HHHhcCCccccceeeecCCCccchHHHHHHHHHH
Q psy17903 47 VIEQQEVVSVLKKCLSGAD-----LPHFLFYGPPGTGKTSTMIAA-CHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120 (355)
Q Consensus 47 ~vg~~~~~~~l~~~l~~~~-----~~~~ll~Gp~G~GKt~la~~l-~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~ 120 (355)
++|++.++..|.-.+-+|. ..|+||.|+||+ ||.+|+++ ++.+.. ..+....++...+ +...+..
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR----~~ft~g~~ss~~g---Lt~s~r~- 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR----GVYVDLRRTELTD---LTAVLKE- 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS----EEEEEGGGCCHHH---HSEEEEE-
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC----eEEecCCCCCccC---ceEEEEc-
Confidence 8899999888887776663 226999999999 99999999 655421 1122222111000 0000000
Q ss_pred HHhhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhc---------cCCccEEEEecCCc-----------cc
Q psy17903 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKE---------TKSTRFCLICNYVS-----------CI 180 (355)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~---------~~~~~~Il~~~~~~-----------~l 180 (355)
..+ .....+.-..+++.++++||++.+++..|.+|++.||+. +..+.+|.++|... .+
T Consensus 286 -~tG-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~L 363 (506)
T 3f8t_A 286 -DRG-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDL 363 (506)
T ss_dssp -SSS-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCS
T ss_pred -CCC-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCC
Confidence 000 000000000034569999999999999999999999964 45677888888643 56
Q ss_pred cccccCCeeeEE--ec-------------CCCHHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHc----------------
Q psy17903 181 IQPLTSRCSKFR--FK-------------PLAENTMLTRLQYIC-EQESVMCDFKALETLVETS---------------- 228 (355)
Q Consensus 181 ~~~l~sr~~~i~--~~-------------~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~l~~~~---------------- 228 (355)
.+++.+|+..+. .. .++.+++.+++...- ......+++++.+++++..
T Consensus 364 p~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~ 443 (506)
T 3f8t_A 364 DQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLP 443 (506)
T ss_dssp CHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccc
Confidence 778999985322 12 234455555555332 1235678898888776431
Q ss_pred --CCCHHHHHHHHH---HHHHhhCCCCCCHHHHHHHhC
Q psy17903 229 --GGDMRRAITCLQ---SCARLKGGEGIVNEDVLEVTG 261 (355)
Q Consensus 229 --~g~~r~~~~~l~---~~~~~~~~~~It~~~v~~~~~ 261 (355)
+-++|.+..+++ ..+.+.+...++.+|+.+++.
T Consensus 444 ~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~ 481 (506)
T 3f8t_A 444 TLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAE 481 (506)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHH
Confidence 234565555554 334444677888888887763
No 94
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=99.01 E-value=1.1e-09 Score=90.77 Aligned_cols=118 Identities=23% Similarity=0.335 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhcCCCC-eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCC
Q psy17903 52 EVVSVLKKCLSGADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ 130 (355)
Q Consensus 52 ~~~~~l~~~l~~~~~~-~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~ 130 (355)
..+..|+.++++-... +++||||||+|||++|.++++.+.+... .+ .+.... +. ....
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~--~f--ans~s~------------f~-l~~l---- 101 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVI--SF--VNSTSH------------FW-LEPL---- 101 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEEC--CC--CCSSSC------------GG-GGGG----
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCee--eE--Eeccch------------hh-hccc----
Confidence 4456777777752212 4999999999999999999999854221 11 111110 00 0000
Q ss_pred CCCCCCCcEEEEEeCCCCCCHHH-HHHHHHHhhhcc-------------CCccEEEEecCC---ccccccccCCeeeEEe
Q psy17903 131 DGKPCPPFKIVILDEADSMTHAA-QAALRRTMEKET-------------KSTRFCLICNYV---SCIIQPLTSRCSKFRF 193 (355)
Q Consensus 131 ~~~~~~~~~vliiDe~d~l~~~~-~~~Ll~~le~~~-------------~~~~~Il~~~~~---~~l~~~l~sr~~~i~~ 193 (355)
.+.++++|||++.-..+. ...+...++..+ ....+|++||.. ....+.|.||+..+.|
T Consensus 102 -----~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~f~F 176 (212)
T 1tue_A 102 -----TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITVFEF 176 (212)
T ss_dssp -----TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEEEEC
T ss_pred -----CCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEEEEc
Confidence 134599999998432122 234555555431 134688899853 3455789999998888
Q ss_pred cC
Q psy17903 194 KP 195 (355)
Q Consensus 194 ~~ 195 (355)
+.
T Consensus 177 ~~ 178 (212)
T 1tue_A 177 PN 178 (212)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.96 E-value=4e-09 Score=116.83 Aligned_cols=150 Identities=16% Similarity=0.169 Sum_probs=101.3
Q ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCC-CC-
Q psy17903 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD-GK- 133 (355)
Q Consensus 56 ~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~-~~- 133 (355)
.+..++..+ .++||+||||||||++|+.+.... .+..++.++.+.......+...+.............. +.
T Consensus 1259 ll~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~----~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~ 1332 (2695)
T 4akg_A 1259 IFYDLLNSK--RGIILCGPPGSGKTMIMNNALRNS----SLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPK 1332 (2695)
T ss_dssp HHHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSC----SSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEB
T ss_pred HHHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcC----CCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCC
Confidence 344555555 369999999999999997776553 2345667777776666666666654322110000000 00
Q ss_pred CCCCcEEEEEeCCCCCCH------HHHHHHHHHhhhcc------------CCccEEEEecCCc-----cccccccCCeee
Q psy17903 134 PCPPFKIVILDEADSMTH------AAQAALRRTMEKET------------KSTRFCLICNYVS-----CIIQPLTSRCSK 190 (355)
Q Consensus 134 ~~~~~~vliiDe~d~l~~------~~~~~Ll~~le~~~------------~~~~~Il~~~~~~-----~l~~~l~sr~~~ 190 (355)
+.+.+-|+||||++.-.. ...+.|+..++... .++.+|.++|.+. .+.+++.+|+..
T Consensus 1333 ~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~v 1412 (2695)
T 4akg_A 1333 SDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAI 1412 (2695)
T ss_dssp SSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEE
T ss_pred CCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeE
Confidence 011334999999876533 35667777776421 2467888898873 688999999999
Q ss_pred EEecCCCHHHHHHHHHHHHHH
Q psy17903 191 FRFKPLAENTMLTRLQYICEQ 211 (355)
Q Consensus 191 i~~~~~~~~~~~~~l~~~~~~ 211 (355)
+.++.|+.+++..++..++..
T Consensus 1413 i~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1413 LYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EECCCCTTTHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999988764
No 96
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.95 E-value=1.1e-09 Score=87.32 Aligned_cols=99 Identities=16% Similarity=0.186 Sum_probs=66.2
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCCCcEEEEEeCC
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEA 146 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~vliiDe~ 146 (355)
..++|+||+|+|||+++++++..+... ....+.+++.+.... .+.. +.+++||||+
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~--g~~~~~~~~~~~~~~--------~~~~--------------~~~lLilDE~ 92 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEA--GKNAAYIDAASMPLT--------DAAF--------------EAEYLAVDQV 92 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTT--TCCEEEEETTTSCCC--------GGGG--------------GCSEEEEEST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhc--CCcEEEEcHHHhhHH--------HHHh--------------CCCEEEEeCc
Confidence 349999999999999999999988542 223566666543222 0000 2249999999
Q ss_pred CCCCHHHHHHHHHHhhhccC--CccEEEEecCC-ccc--cccccCCee
Q psy17903 147 DSMTHAAQAALRRTMEKETK--STRFCLICNYV-SCI--IQPLTSRCS 189 (355)
Q Consensus 147 d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~-~~l--~~~l~sr~~ 189 (355)
+.+....+..|..+++.... .+++|++++.. ..+ .+.+.||+.
T Consensus 93 ~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~~~L~SRl~ 140 (149)
T 2kjq_A 93 EKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIREDLRTRMA 140 (149)
T ss_dssp TCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCCHHHHHHGG
T ss_pred cccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHccccHHHHHHHh
Confidence 99987778888888765322 23367788743 222 278888875
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.91 E-value=6.1e-10 Score=99.98 Aligned_cols=131 Identities=16% Similarity=0.198 Sum_probs=70.4
Q ss_pred ccccCCCCCCcccccH----HHHHHHHHHHhcCC---CCeEEEECCCCCCHHHHHHHHHHHhc-CCccccceeeecCCCc
Q psy17903 36 VEKYRPKTIDDVIEQQ----EVVSVLKKCLSGAD---LPHFLFYGPPGTGKTSTMIAACHQLF-GDMYRERILELNASDD 107 (355)
Q Consensus 36 ~~k~~p~~~~~~vg~~----~~~~~l~~~l~~~~---~~~~ll~Gp~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~ 107 (355)
...+++.+|+++++.. .++..+.+++.... ..+++|+||+|+|||+++.++++.+. .... .++.+++++
T Consensus 115 ~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~--~v~~~~~~~- 191 (308)
T 2qgz_A 115 PKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGV--STTLLHFPS- 191 (308)
T ss_dssp CGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCC--CEEEEEHHH-
T ss_pred CHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCC--cEEEEEHHH-
Confidence 3455678999998633 35556667776532 34699999999999999999999885 4322 333333321
Q ss_pred cchHHHHHHHHH-HHHhhccCCCCCCCCCCCcEEEEEeCCCCCCH--HHHHHHHH-Hhhhc-cCCccEEEEecCC
Q psy17903 108 RGIQVIRDKVKT-FAQQTASGFNQDGKPCPPFKIVILDEADSMTH--AAQAALRR-TMEKE-TKSTRFCLICNYV 177 (355)
Q Consensus 108 ~~~~~i~~~i~~-~~~~~~~~~~~~~~~~~~~~vliiDe~d~l~~--~~~~~Ll~-~le~~-~~~~~~Il~~~~~ 177 (355)
+...+.. +......... . ......+|||||++.... ..++.|+. +++.. .....+|++||..
T Consensus 192 -----l~~~l~~~~~~~~~~~~~--~-~~~~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~ 258 (308)
T 2qgz_A 192 -----FAIDVKNAISNGSVKEEI--D-AVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYS 258 (308)
T ss_dssp -----HHHHHHCCCC----CCTT--H-HHHTSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSC
T ss_pred -----HHHHHHHHhccchHHHHH--H-HhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 1111100 0000000000 0 000224999999976543 22333433 55432 2345688888853
No 98
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.80 E-value=1.4e-07 Score=92.44 Aligned_cols=189 Identities=12% Similarity=0.098 Sum_probs=104.3
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHhc--CCccccceeeecCCCccchHHHHH
Q psy17903 40 RPKTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQLF--GDMYRERILELNASDDRGIQVIRD 115 (355)
Q Consensus 40 ~p~~~~~~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l~--~~~~~~~~~~~~~~~~~~~~~i~~ 115 (355)
-|.....++|++..++.|.+.+... ..+.+.|+||+|+|||++|..+++... ...+...++.++.... ....+..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~~~ 197 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGLLM 197 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHHHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHHHH
Confidence 3566678999999999999999743 223399999999999999999875321 1111111222222211 1111111
Q ss_pred HHHHHHHhhcc-CCCCCCCCC----------------CCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCc
Q psy17903 116 KVKTFAQQTAS-GFNQDGKPC----------------PPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178 (355)
Q Consensus 116 ~i~~~~~~~~~-~~~~~~~~~----------------~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 178 (355)
.+......... .......+. ..+-+|||||++.. . .+..+ +..+.+|+||....
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~----~l~~l---~~~~~ilvTsR~~~ 268 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--W----VLKAF---DSQCQILLTTRDKS 268 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--H----HHHTT---CSSCEEEEEESCGG
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--H----HHHHh---cCCCeEEEECCCcH
Confidence 11111110000 000000000 02239999999762 1 12222 45677777776543
Q ss_pred cccccccCCeeeEEe---cCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy17903 179 CIIQPLTSRCSKFRF---KPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242 (355)
Q Consensus 179 ~l~~~l~sr~~~i~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 242 (355)
.. ..+. ...+.+ .+++.++..+++...+... ..-.++....|++.++|.+-.+......+
T Consensus 269 ~~-~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~~l 331 (591)
T 1z6t_A 269 VT-DSVM--GPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIGALL 331 (591)
T ss_dssp GG-TTCC--SCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-HhcC--CCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 21 1111 223333 5899999999998876431 11124567889999999998776655444
No 99
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.71 E-value=1.1e-06 Score=97.89 Aligned_cols=168 Identities=20% Similarity=0.203 Sum_probs=115.0
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCC
Q psy17903 53 VVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132 (355)
Q Consensus 53 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~ 132 (355)
....+..++..+. ..++.||+|||||++++.+++.+ ...++.+||.+......+...+......+
T Consensus 634 ~~~tl~~Al~~~~--~~~l~GpaGtGKTe~vk~LA~~l-----g~~~v~~nc~e~ld~~~lg~~~~g~~~~G-------- 698 (2695)
T 4akg_A 634 GFATLTDSLHQKY--GGCFFGPAGTGKTETVKAFGQNL-----GRVVVVFNCDDSFDYQVLSRLLVGITQIG-------- 698 (2695)
T ss_dssp HHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHTT-----TCCCEEEETTSSCCHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHhCC--CCcccCCCCCCcHHHHHHHHHHh-----CCcEEEEECCCCCChhHhhHHHHHHHhcC--------
Confidence 3445555555442 47899999999999999999998 44677899998888777766666655443
Q ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHH-------HHhhhc-------------cCCccEEEEecC----CccccccccCCe
Q psy17903 133 KPCPPFKIVILDEADSMTHAAQAALR-------RTMEKE-------------TKSTRFCLICNY----VSCIIQPLTSRC 188 (355)
Q Consensus 133 ~~~~~~~vliiDe~d~l~~~~~~~Ll-------~~le~~-------------~~~~~~Il~~~~----~~~l~~~l~sr~ 188 (355)
-.+++||++++..+.+..+. ..+.+. ++.+.++++.|. ...+.+++++||
T Consensus 699 ------aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~F 772 (2695)
T 4akg_A 699 ------AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSF 772 (2695)
T ss_dssp ------CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTE
T ss_pred ------CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhhe
Confidence 28999999999998776662 222211 234445556662 345788999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHH
Q psy17903 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET-------------SGGDMRRAITCLQSCAR 244 (355)
Q Consensus 189 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~-------------~~g~~r~~~~~l~~~~~ 244 (355)
+.+.+..|+.+.+.+++... .|....+.....++.. ..-.+|.+...|..+..
T Consensus 773 r~v~m~~Pd~~~i~ei~l~s---~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag~ 838 (2695)
T 4akg_A 773 REFSMKSPQSGTIAEMILQI---MGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCSP 838 (2695)
T ss_dssp EEEECCCCCHHHHHHHHHHH---HHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHHH
T ss_pred EEEEeeCCCHHHHHHHHHHh---cCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHHH
Confidence 99999999999888886533 3454444444433321 12467887777765543
No 100
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.62 E-value=2.4e-06 Score=90.59 Aligned_cols=190 Identities=11% Similarity=0.078 Sum_probs=109.6
Q ss_pred CCCCCCcccccHHHHHHHHHHHhcC--CCCeEEEECCCCCCHHHHHHHHHHHh--cCCccccceeeecCCCccchH---H
Q psy17903 40 RPKTIDDVIEQQEVVSVLKKCLSGA--DLPHFLFYGPPGTGKTSTMIAACHQL--FGDMYRERILELNASDDRGIQ---V 112 (355)
Q Consensus 40 ~p~~~~~~vg~~~~~~~l~~~l~~~--~~~~~ll~Gp~G~GKt~la~~l~~~l--~~~~~~~~~~~~~~~~~~~~~---~ 112 (355)
-|.....++|++..++.|.+.+... ...-+.|+|+.|+|||++|+.+++.. ....+...++.++.+...... .
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 198 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMK 198 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHHHH
Confidence 4566678999999999999998543 22238899999999999999887653 122122223334433321111 1
Q ss_pred HHHHHHHHHHhhccCCC-C--------------CCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCC
Q psy17903 113 IRDKVKTFAQQTASGFN-Q--------------DGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177 (355)
Q Consensus 113 i~~~i~~~~~~~~~~~~-~--------------~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 177 (355)
+................ . .++ .++-+|||||++.. . . ++.....+.+|+||...
T Consensus 199 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~~LlvlDd~~~~--~---~----~~~~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 199 LQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRK--HPRSLLILDDVWDP--W---V----LKAFDNQCQILLTTRDK 267 (1249)
T ss_dssp HHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSS--SCSCEEEEESCCCH--H---H----HTTTCSSCEEEEEESST
T ss_pred HHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhcc--CCCEEEEEecCCCH--H---H----HHhhcCCCEEEEEcCCH
Confidence 11111111110000000 0 000 02349999999853 1 1 22224567788777655
Q ss_pred ccccccccCCeeeEEecC-CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy17903 178 SCIIQPLTSRCSKFRFKP-LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC 242 (355)
Q Consensus 178 ~~l~~~l~sr~~~i~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~ 242 (355)
.-. ..+......+.+.+ ++.++..+.+...+....-. .++....|++.++|.+-.+......+
T Consensus 268 ~~~-~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glPLal~~~~~~l 331 (1249)
T 3sfz_A 268 SVT-DSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSPLVVSLIGALL 331 (1249)
T ss_dssp TTT-TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHH-HhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 322 12223334677875 99999999998776433222 23567889999999987766555444
No 101
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=98.62 E-value=6.7e-07 Score=86.75 Aligned_cols=181 Identities=15% Similarity=0.126 Sum_probs=102.6
Q ss_pred cccHHHHHHHHHHHhcC---CCCeEEEECCCCCCHHHHHHHHHHH---hcCCccccceeeecCCCcc--chH-HHHHHHH
Q psy17903 48 IEQQEVVSVLKKCLSGA---DLPHFLFYGPPGTGKTSTMIAACHQ---LFGDMYRERILELNASDDR--GIQ-VIRDKVK 118 (355)
Q Consensus 48 vg~~~~~~~l~~~l~~~---~~~~~ll~Gp~G~GKt~la~~l~~~---l~~~~~~~~~~~~~~~~~~--~~~-~i~~~i~ 118 (355)
+|++..++.|.+++..+ ....+.|+|+.|+|||++|+.+++. -....+. ..+.++.+... +.. .....+.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~-~~~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYD-SIVWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBS-EEEEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCC-cEEEEEECCCCCCCHHHHHHHHHH
Confidence 49999999999998654 2233999999999999999999972 2222222 22333433321 222 2222233
Q ss_pred HHHHhhc---cCCCCCC-----------CCCCC-cEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCCcccccc
Q psy17903 119 TFAQQTA---SGFNQDG-----------KPCPP-FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183 (355)
Q Consensus 119 ~~~~~~~---~~~~~~~-----------~~~~~-~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~ 183 (355)
....... ......+ .-..+ +-+||+||++... .. .+. . ...+.+|+||.... +...
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~--~~-~~~----~-~~gs~ilvTTR~~~-v~~~ 280 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE--TI-RWA----Q-ELRLRCLVTTRDVE-ISNA 280 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH--HH-HHH----H-HTTCEEEEEESBGG-GGGG
T ss_pred HHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch--hh-ccc----c-cCCCEEEEEcCCHH-HHHH
Confidence 2221100 0000000 00012 4599999998742 11 221 1 14566777776533 2222
Q ss_pred ccCCeeeEEecCCCHHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHH
Q psy17903 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESV-MCDFKALETLVETSGGDMRRAITC 238 (355)
Q Consensus 184 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~ 238 (355)
.......+.+++++.++..+++.+.+..... .-.++....|++.|+|.+-.+...
T Consensus 281 ~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 281 ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Confidence 2222357999999999999998877432211 111346788999999998776544
No 102
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.62 E-value=5.5e-07 Score=100.79 Aligned_cols=184 Identities=15% Similarity=0.143 Sum_probs=116.9
Q ss_pred HHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCC-CCCCCC
Q psy17903 56 VLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF-NQDGKP 134 (355)
Q Consensus 56 ~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~-~~~~~~ 134 (355)
.+..++..+ .++||+||+|||||+++..+...+. +..++.++.+.......+...+........... .....|
T Consensus 1296 ll~~ll~~~--~pvLL~GptGtGKT~li~~~L~~l~----~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p 1369 (3245)
T 3vkg_A 1296 VLHAWLSEH--RPLILCGPPGSGKTMTLTSTLRAFP----DFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRP 1369 (3245)
T ss_dssp HHHHHHHTT--CCCEEESSTTSSHHHHHHHHGGGCT----TEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEE
T ss_pred HHHHHHHCC--CcEEEECCCCCCHHHHHHHHHHhCC----CCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCC
Confidence 445556654 3589999999999998877665542 335678888888887777766654321110000 000011
Q ss_pred --CCCcEEEEEeCCCCCCHH------HHHHHHHHhhhc------------cCCccEEEEecCC-----ccccccccCCee
Q psy17903 135 --CPPFKIVILDEADSMTHA------AQAALRRTMEKE------------TKSTRFCLICNYV-----SCIIQPLTSRCS 189 (355)
Q Consensus 135 --~~~~~vliiDe~d~l~~~------~~~~Ll~~le~~------------~~~~~~Il~~~~~-----~~l~~~l~sr~~ 189 (355)
.+++-|+||||++.-..+ ..+.|+.+++.. ..++.||.++|.+ ..+.+++.+|+.
T Consensus 1370 ~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~ 1449 (3245)
T 3vkg_A 1370 TQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAP 1449 (3245)
T ss_dssp SSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCC
T ss_pred CcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhce
Confidence 113458999999865432 566777777642 1356688888865 347889999999
Q ss_pred eEEecCCCHHHHHHHHHHHHHHcCC------CCCHHHHHHHHHH---------------cCCCHHHHHHHHHHHHHh
Q psy17903 190 KFRFKPLAENTMLTRLQYICEQESV------MCDFKALETLVET---------------SGGDMRRAITCLQSCARL 245 (355)
Q Consensus 190 ~i~~~~~~~~~~~~~l~~~~~~~~~------~~~~~~~~~l~~~---------------~~g~~r~~~~~l~~~~~~ 245 (355)
.+.+..|+.+.+..++..+....-. .+.+..++..++. .--|+|.+.+.++-+...
T Consensus 1450 vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qGll~~ 1526 (3245)
T 3vkg_A 1450 ILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRALLEA 1526 (3245)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHHHHHh
Confidence 9999999999999998776553211 1223333333321 123888888888776553
No 103
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.37 E-value=3.7e-06 Score=68.91 Aligned_cols=66 Identities=14% Similarity=0.264 Sum_probs=45.9
Q ss_pred EEEEEeCCC---CCCHHHHHHHHHHhhhccCCccEEEEec--CCccccccccCC--eeeEEecCCCHHHHHHHHH
Q psy17903 139 KIVILDEAD---SMTHAAQAALRRTMEKETKSTRFCLICN--YVSCIIQPLTSR--CSKFRFKPLAENTMLTRLQ 206 (355)
Q Consensus 139 ~vliiDe~d---~l~~~~~~~Ll~~le~~~~~~~~Il~~~--~~~~l~~~l~sr--~~~i~~~~~~~~~~~~~l~ 206 (355)
+++++||++ .+....++.+.+.+++. ...+|++++ +...+...+.+| |.++++.+.+.+++...+.
T Consensus 101 ~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 101 KVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp CEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred CEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 499999964 45567788899999873 333555663 334466777777 7899998888766655544
No 104
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.30 E-value=6.7e-07 Score=74.63 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=39.8
Q ss_pred EEEEEeCCCCCCH---HH--HHHHHHHhhhc-cCCccEEEEecCCccccccccCCee-eEEecCC
Q psy17903 139 KIVILDEADSMTH---AA--QAALRRTMEKE-TKSTRFCLICNYVSCIIQPLTSRCS-KFRFKPL 196 (355)
Q Consensus 139 ~vliiDe~d~l~~---~~--~~~Ll~~le~~-~~~~~~Il~~~~~~~l~~~l~sr~~-~i~~~~~ 196 (355)
.+|||||++.+.+ +. ...++..++.. .....+|++++.+..+..+++.|.. .+++.++
T Consensus 89 ~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 89 SIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp CEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred eEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 4999999999832 11 11344555433 3455678889888888889999987 6677653
No 105
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.27 E-value=2e-05 Score=80.18 Aligned_cols=43 Identities=21% Similarity=0.288 Sum_probs=36.3
Q ss_pred ccccHHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHH
Q psy17903 47 VIEQQEVVSVLKKCLSGA-DLPHFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 47 ~vg~~~~~~~l~~~l~~~-~~~~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.+|++..++.|.+++... ..+-+.|+|+.|+|||++|+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 389999999999998763 3334999999999999999999864
No 106
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.19 E-value=0.00012 Score=82.47 Aligned_cols=169 Identities=17% Similarity=0.143 Sum_probs=114.1
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCC
Q psy17903 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGK 133 (355)
Q Consensus 54 ~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~ 133 (355)
...|..++..+. ...+.||+|||||.+++.+++.++ ..++.+||++..+...+...+...+..+.
T Consensus 594 y~tl~~Al~~~~--gg~~~GPaGtGKTet~k~La~~lg-----r~~~vfnC~~~~d~~~~g~i~~G~~~~Ga-------- 658 (3245)
T 3vkg_A 594 YLTLTQALESRM--GGNPFGPAGTGKTETVKALGSQLG-----RFVLVFCCDEGFDLQAMSRIFVGLCQCGA-------- 658 (3245)
T ss_dssp HHHHHHHHHTTC--EEEEECSTTSSHHHHHHHHHHHTT-----CCEEEEECSSCCCHHHHHHHHHHHHHHTC--------
T ss_pred HHHHHHHHHhcC--CCCCCCCCCCCHHHHHHHHHHHhC-----CeEEEEeCCCCCCHHHHHHHHhhHhhcCc--------
Confidence 344555555432 257999999999999999999994 45678899887777766666666555432
Q ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHHhh-------h---------c-----cCCccEEEEecC----CccccccccCCe
Q psy17903 134 PCPPFKIVILDEADSMTHAAQAALRRTME-------K---------E-----TKSTRFCLICNY----VSCIIQPLTSRC 188 (355)
Q Consensus 134 ~~~~~~vliiDe~d~l~~~~~~~Ll~~le-------~---------~-----~~~~~~Il~~~~----~~~l~~~l~sr~ 188 (355)
-.++||++++..+....+...+. . + ...+.++++.|. ...+.+.+++++
T Consensus 659 ------W~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lF 732 (3245)
T 3vkg_A 659 ------WGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLF 732 (3245)
T ss_dssp ------EEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTE
T ss_pred ------EEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhc
Confidence 67999999999877655544332 1 1 123455555563 346888999999
Q ss_pred eeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-------------cCCCHHHHHHHHHHHHHhh
Q psy17903 189 SKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVET-------------SGGDMRRAITCLQSCARLK 246 (355)
Q Consensus 189 ~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~-------------~~g~~r~~~~~l~~~~~~~ 246 (355)
+.|.+..|+.+.+.+++.. ..|+.-.......++.. ..-.+|.+...|..+..+.
T Consensus 733 r~v~m~~Pd~~~i~ei~L~---s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~AG~lk 800 (3245)
T 3vkg_A 733 RSMAMIKPDREMIAQVMLY---SQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSAGGIK 800 (3245)
T ss_dssp EEEECCSCCHHHHHHHHHH---TTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHHHH
Confidence 9999999999998888643 35655444444433321 1235888888887665443
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.10 E-value=4.5e-07 Score=74.84 Aligned_cols=36 Identities=8% Similarity=0.095 Sum_probs=25.7
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEec
Q psy17903 137 PFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICN 175 (355)
Q Consensus 137 ~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 175 (355)
+..+|+|||++.++++..+.|....+. +..+|+++.
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl 111 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGL 111 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEE
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEee
Confidence 456999999999987777777666664 344555554
No 108
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.00 E-value=3.1e-05 Score=68.82 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
++|+||||+|||+++..++..
T Consensus 126 iLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 126 VIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHh
Confidence 899999999999999999987
No 109
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.94 E-value=3.3e-05 Score=74.94 Aligned_cols=119 Identities=21% Similarity=0.271 Sum_probs=68.3
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHH-------HHHHH
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKV-------KTFAQ 122 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i-------~~~~~ 122 (355)
.+.+...+...+.. +.++|+|+||||||+++..++..+..... .++ +-+........+.+.+ ..+..
T Consensus 191 ~~~Q~~Av~~~~~~---~~~~I~G~pGTGKTt~i~~l~~~l~~~g~--~Vl-~~ApT~~Aa~~L~e~~~~~a~Tih~ll~ 264 (574)
T 3e1s_A 191 SEEQASVLDQLAGH---RLVVLTGGPGTGKSTTTKAVADLAESLGL--EVG-LCAPTGKAARRLGEVTGRTASTVHRLLG 264 (574)
T ss_dssp CHHHHHHHHHHTTC---SEEEEECCTTSCHHHHHHHHHHHHHHTTC--CEE-EEESSHHHHHHHHHHHTSCEEEHHHHTT
T ss_pred CHHHHHHHHHHHhC---CEEEEEcCCCCCHHHHHHHHHHHHHhcCC--eEE-EecCcHHHHHHhHhhhcccHHHHHHHHc
Confidence 45566666665532 35999999999999999999988754332 222 2222222223333221 11111
Q ss_pred hhccCCCCCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCC
Q psy17903 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177 (355)
Q Consensus 123 ~~~~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 177 (355)
..............+..+|||||+..+.......|++.+. ....+|++++..
T Consensus 265 ~~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~~ 316 (574)
T 3e1s_A 265 YGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDTD 316 (574)
T ss_dssp EETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECTT
T ss_pred CCcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEeccc
Confidence 1100000000011245799999999999888877877664 456778777643
No 110
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.84 E-value=3.8e-05 Score=65.04 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++++||+|+||||++..++..+..
T Consensus 15 ~litG~mGsGKTT~ll~~~~r~~~ 38 (223)
T 2b8t_A 15 EFITGPMFAGKTAELIRRLHRLEY 38 (223)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh
Confidence 899999999999999888887754
No 111
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.67 E-value=0.00029 Score=57.95 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=59.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC-Cccch-----------------------------HHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS-DDRGI-----------------------------QVIRDKV 117 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~-~~~~~-----------------------------~~i~~~i 117 (355)
.+++|+++|.||||+|-.++-...+..++.-++.+... ...+. ......+
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 49999999999999999988877655444333322211 00011 1111111
Q ss_pred HHHHHhhccCCCCCCCCCCCcEEEEEeCC------CCCCHHHHHHHHHHhhhccCCccEEEEecCCc
Q psy17903 118 KTFAQQTASGFNQDGKPCPPFKIVILDEA------DSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178 (355)
Q Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~vliiDe~------d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 178 (355)
......... ..+.+||+||+ +.+.. +.++..+.+.+...-+|+|++...
T Consensus 110 ~~a~~~l~~---------~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 110 QHGKRMLAD---------PLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHTTC---------TTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCC
T ss_pred HHHHHHHhc---------CCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCc
Confidence 111111110 15679999999 44544 357778888888889999998754
No 112
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=97.65 E-value=0.00039 Score=59.48 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=29.1
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+.+...+..+++.+ +++++||+|+|||.++..++..+
T Consensus 95 ~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 95 RDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 455555666666543 48999999999999999888775
No 113
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.64 E-value=0.00025 Score=55.37 Aligned_cols=122 Identities=8% Similarity=0.019 Sum_probs=76.8
Q ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCC-ccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCCCCCCC
Q psy17903 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD-MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP 136 (355)
Q Consensus 58 ~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~ 136 (355)
.+.++++-.|-|||||+.-.-....+.++.+.+... ....+++.+++. ...+. .+......+.++
T Consensus 10 ~~~l~~~~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~~e~~~~~~~~~--~~~~~---l~~~~~s~slF~--------- 75 (140)
T 1jql_B 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN--TDWNA---IFSLCQAMSLFA--------- 75 (140)
T ss_dssp HHHHHHCCCSEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEECCCCSTT--CCHHH---HHHHHHCCCTTC---------
T ss_pred HHHHhccCCceEEEEcCcHHHHHHHHHHHHHHHHHCCCcceeEEEecCC--CCHHH---HHHHHhcCCCCC---------
Confidence 344444444459999999766666667776655422 222234444441 33333 344444444443
Q ss_pred CcEEEEEeCCCC-CCHHHHHHHHHHhhhccCCccEEEEecCC------ccccccccCCeeeEEe
Q psy17903 137 PFKIVILDEADS-MTHAAQAALRRTMEKETKSTRFCLICNYV------SCIIQPLTSRCSKFRF 193 (355)
Q Consensus 137 ~~~vliiDe~d~-l~~~~~~~Ll~~le~~~~~~~~Il~~~~~------~~l~~~l~sr~~~i~~ 193 (355)
++|+|+|.+.+. +..+..+.|..+++.++..+++|++.... .++.+++.+.+..+.+
T Consensus 76 ~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~~ 139 (140)
T 1jql_B 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp CCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred CCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEEe
Confidence 788999999765 55566788999999999899999887543 2466667666666654
No 114
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=97.61 E-value=0.00036 Score=68.27 Aligned_cols=105 Identities=21% Similarity=0.283 Sum_probs=58.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC--ccccceeeecCCCccchHHHHHHHHHHHHhh----------------ccC--
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGD--MYRERILELNASDDRGIQVIRDKVKTFAQQT----------------ASG-- 127 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~--~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~----------------~~~-- 127 (355)
.++++|+||||||+++..+...+... .....+ .+-++...-...+.+.+....... ...
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~v-ll~APTg~AA~~L~e~~~~~~~~l~l~~~~~~~~~~~~~Tih~ll 244 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRI-RLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEDASTLHRLL 244 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCE-EEEBSSHHHHHHHHHHHTHHHHHSSCCSCCCCSCSCCCBTTTSCC
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeE-EEEeCChhHHHHHHHHHHHHHhcCCCCHHHHhccchhhhhhHhhh
Confidence 59999999999999999888877421 111122 222333222333333333221100 000
Q ss_pred -CC--------CCCCCCCCcEEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecCC
Q psy17903 128 -FN--------QDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177 (355)
Q Consensus 128 -~~--------~~~~~~~~~~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~ 177 (355)
.. ....+ -..++|||||++.+.......|++.+ +....+|+.++..
T Consensus 245 ~~~~~~~~~~~~~~~~-l~~d~lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD~~ 299 (608)
T 1w36_D 245 GAQPGSQRLRHHAGNP-LHLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGDRD 299 (608)
T ss_dssp -----------CTTSC-CSCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEECTT
T ss_pred ccCCCchHHHhccCCC-CCCCEEEEechhhCCHHHHHHHHHhC---CCCCEEEEEcchh
Confidence 00 00011 14569999999988876666776665 4567788888643
No 115
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.55 E-value=0.00028 Score=76.59 Aligned_cols=37 Identities=24% Similarity=0.317 Sum_probs=27.1
Q ss_pred HHHHHh-cCC--CCeEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 57 LKKCLS-GAD--LPHFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 57 l~~~l~-~~~--~~~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
|...+. .|- ...++|+||||||||++|.+++.+....
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~ 1454 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1454 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 445555 332 2249999999999999999998876543
No 116
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.51 E-value=0.00041 Score=58.41 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=23.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCcc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~ 95 (355)
+++.|++|+|||+++..++..+.....
T Consensus 9 I~~~~kgGvGKTt~a~~la~~l~~~G~ 35 (228)
T 2r8r_A 9 VFLGAAPGVGKTYAMLQAAHAQLRQGV 35 (228)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 999999999999999999998765433
No 117
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.50 E-value=0.0028 Score=60.67 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=49.3
Q ss_pred CcEEEEEeCCCCCCH----HHHHHHHHHhhhc-cCCccEEEEecCCc--cccccccCCee-eEEecCCCHHHHHHHHH
Q psy17903 137 PFKIVILDEADSMTH----AAQAALRRTMEKE-TKSTRFCLICNYVS--CIIQPLTSRCS-KFRFKPLAENTMLTRLQ 206 (355)
Q Consensus 137 ~~~vliiDe~d~l~~----~~~~~Ll~~le~~-~~~~~~Il~~~~~~--~l~~~l~sr~~-~i~~~~~~~~~~~~~l~ 206 (355)
.+-+|||||++.+.. +....|.++.... ...+.+|++|..+. .+...+++.+. .+.|..-+..+...++.
T Consensus 343 P~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 343 PTIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp CEEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred CcEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 346899999998743 3445555666554 34567788887776 56667777776 78888888888877764
No 118
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.49 E-value=0.00021 Score=57.96 Aligned_cols=21 Identities=29% Similarity=0.395 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
++|.|+||+||||+++.+++.
T Consensus 5 I~i~G~~GsGKST~a~~L~~~ 25 (181)
T 1ly1_A 5 ILTIGCPGSGKSTWAREFIAK 25 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHhh
Confidence 899999999999999999983
No 119
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.45 E-value=0.0014 Score=54.94 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=24.1
Q ss_pred HHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHH
Q psy17903 57 LKKCLSGADLPH--FLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 57 l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~ 88 (355)
|...+.++-.+. ++|+||+|+|||+++..++.
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 344444333333 99999999999999999998
No 120
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.40 E-value=0.00056 Score=55.01 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|.|++|+||||+++.+ +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4889999999999999999 665
No 121
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.39 E-value=0.00031 Score=59.43 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|+||+|+|||++++.++..+.
T Consensus 26 ~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 26 IALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999997653
No 122
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.38 E-value=0.00025 Score=59.17 Aligned_cols=101 Identities=9% Similarity=0.052 Sum_probs=49.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCc--cchHHHHHHHHHHHHhhc-cCCCCCC--CCCCCcEEEEE
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDD--RGIQVIRDKVKTFAQQTA-SGFNQDG--KPCPPFKIVIL 143 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~i~~~i~~~~~~~~-~~~~~~~--~~~~~~~vlii 143 (355)
.+++|+.|+|||+.+..++........+ ++-+..... .+...+...+.. ..... .....+. ....+..+|+|
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~k--Vli~k~~~d~R~ge~~i~s~~g~-~~~a~~~~~~~~~~~~~~~~~dvViI 107 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQH--AIVFKPCIDNRYSEEDVVSHNGL-KVKAVPVSASKDIFKHITEEMDVIAI 107 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCC--EEEEECC------------------CCEEECSSGGGGGGGCCSSCCEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCE--EEEEEeccCCcchHHHHHhhcCC-eeEEeecCCHHHHHHHHhcCCCEEEE
Confidence 7799999999999998888776543332 332322211 111112111110 00000 0000000 00013569999
Q ss_pred eCCCCCCHHHHHHHHHHhhhccCCccEEEEec
Q psy17903 144 DEADSMTHAAQAALRRTMEKETKSTRFCLICN 175 (355)
Q Consensus 144 De~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~ 175 (355)
||++.++++..+.+..+.+ .+..+|+++-
T Consensus 108 DEaQF~~~~~V~~l~~l~~---~~~~Vi~~Gl 136 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLAN---RGYRVIVAGL 136 (214)
T ss_dssp CCGGGSCTTHHHHHHHHHH---TTCEEEEEEC
T ss_pred ECcccCCHHHHHHHHHHhh---CCCEEEEEec
Confidence 9999998776654444333 2456666665
No 123
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.36 E-value=0.004 Score=52.10 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.|++|+||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999998873
No 124
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.35 E-value=0.00049 Score=56.73 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+++||.|+|||+.+..+++...
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 89999999999999988888764
No 125
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.33 E-value=0.00086 Score=60.80 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=26.2
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 56 VLKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 56 ~l~~~l~-~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.|...+. +|-.+. ++|+||||+|||+++..++....
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3444454 333333 99999999999999999987654
No 126
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.31 E-value=0.00078 Score=61.64 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.++|+||+|+||||+++.++..+.+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~~g 195 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELCGG 195 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3999999999999999999988643
No 127
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.30 E-value=0.0014 Score=59.40 Aligned_cols=37 Identities=16% Similarity=0.199 Sum_probs=27.8
Q ss_pred HHHHHHHh-cCCCCe--EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 55 SVLKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 55 ~~l~~~l~-~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
..|...+. +|-.+. ++|+||||+|||+++..++..+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34555565 443333 99999999999999999998764
No 128
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.30 E-value=0.001 Score=60.41 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|+|+||+|||+++..++....
T Consensus 66 i~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 66 VEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 129
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.27 E-value=0.002 Score=58.69 Aligned_cols=36 Identities=31% Similarity=0.336 Sum_probs=26.3
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 56 VLKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 56 ~l~~~l~-~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.|...+. +|-.+. ++|+|+||+|||+++..++....
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHH
Confidence 4455554 332222 89999999999999999988764
No 130
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.24 E-value=0.002 Score=55.83 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|+||+||||+++.+++.+.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999853
No 131
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.22 E-value=0.00045 Score=56.72 Aligned_cols=24 Identities=21% Similarity=0.218 Sum_probs=20.5
Q ss_pred EEEECCCCCCHH-HHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKT-STMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt-~la~~l~~~l~~ 92 (355)
+++|||.|+||| .|.+++.+....
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc
Confidence 899999999999 788888877644
No 132
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.21 E-value=0.0059 Score=52.23 Aligned_cols=23 Identities=26% Similarity=0.642 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|.||||+||||+++.+++.+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 39999999999999999999987
No 133
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.18 E-value=0.0056 Score=56.99 Aligned_cols=27 Identities=30% Similarity=0.441 Sum_probs=23.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCcc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~ 95 (355)
+++.|++|+||||++..++..+.....
T Consensus 103 IlivG~~G~GKTTt~~kLA~~l~~~G~ 129 (443)
T 3dm5_A 103 LLMVGIQGSGKTTTVAKLARYFQKRGY 129 (443)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred EEEECcCCCCHHHHHHHHHHHHHHCCC
Confidence 999999999999999999998865433
No 134
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.16 E-value=0.0045 Score=51.70 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.|++|+||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999873
No 135
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=97.14 E-value=0.00071 Score=56.46 Aligned_cols=39 Identities=21% Similarity=0.330 Sum_probs=28.0
Q ss_pred ccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
-.+.+...+..++.+ .++++.+|+|+|||.++...+...
T Consensus 34 l~~~Q~~~i~~~~~~---~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 34 LRPYQMEVAQPALEG---KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCHHHHHHHHHHHTT---CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcC---CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 345555555555543 359999999999999988777654
No 136
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.11 E-value=0.001 Score=71.51 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
+++|||||||||++|.+++.+-..
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~ 1108 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQR 1108 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHhhh
Confidence 999999999999999999987643
No 137
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.11 E-value=0.0026 Score=54.22 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=19.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|+||+|+|||+++..++...
T Consensus 26 ~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 26 VLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999998887665
No 138
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.06 E-value=0.00049 Score=56.17 Aligned_cols=25 Identities=24% Similarity=0.207 Sum_probs=22.9
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.++|.|++|+||||+++.+++.+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999999983
No 139
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.05 E-value=0.0006 Score=63.48 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|+|+||+||||+++.+++.+
T Consensus 261 Iil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp EEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999876
No 140
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.05 E-value=0.0027 Score=53.07 Aligned_cols=27 Identities=26% Similarity=0.404 Sum_probs=23.1
Q ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 65 DLPHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 65 ~~~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
..++++|.|++|+|||+++.++.....
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 445699999999999999999988653
No 141
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=97.03 E-value=0.0042 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||+|+||||+++.++..+.
T Consensus 19 i~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 19 YIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhccCC
Confidence 89999999999999999998763
No 142
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.02 E-value=0.00052 Score=55.62 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|+|++|+||||+++.+++.+.
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 389999999999999999999973
No 143
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.01 E-value=0.0056 Score=55.44 Aligned_cols=22 Identities=23% Similarity=0.268 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|+||+|+|||+++..++...
T Consensus 134 ~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 134 TEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999876
No 144
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.01 E-value=0.0045 Score=58.75 Aligned_cols=69 Identities=16% Similarity=0.228 Sum_probs=45.0
Q ss_pred cEEEEEeCCCCCCHHH----HHHHHHHhhhcc-CCccEEEEecCCc--cccccccCCee-eEEecCCCHHHHHHHHH
Q psy17903 138 FKIVILDEADSMTHAA----QAALRRTMEKET-KSTRFCLICNYVS--CIIQPLTSRCS-KFRFKPLAENTMLTRLQ 206 (355)
Q Consensus 138 ~~vliiDe~d~l~~~~----~~~Ll~~le~~~-~~~~~Il~~~~~~--~l~~~l~sr~~-~i~~~~~~~~~~~~~l~ 206 (355)
+-+|+|||+..+.... .+.+..+..... ..+.+|++|..+. .+...+++.+. .+.|.--+..+...++.
T Consensus 298 ~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 298 YIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred cEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 3489999997665422 233333334333 3677788888776 35556666665 78888888888877765
No 145
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.01 E-value=0.0024 Score=56.55 Aligned_cols=50 Identities=14% Similarity=0.180 Sum_probs=31.8
Q ss_pred HHHHHHh----cCCCCe-EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC
Q psy17903 56 VLKKCLS----GADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (355)
Q Consensus 56 ~l~~~l~----~~~~~~-~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 105 (355)
.|...+. +|-.+. ++|+||||+|||+++..++...........++.++..
T Consensus 13 ~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E 67 (333)
T 3io5_A 13 MMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSE 67 (333)
T ss_dssp HHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred HHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecc
Confidence 4455565 444444 8999999999999998887765421112234455544
No 146
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.00 E-value=0.00076 Score=56.85 Aligned_cols=102 Identities=9% Similarity=0.131 Sum_probs=49.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhc-cCCCCCCC-CCCCcEEEEEeCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA-SGFNQDGK-PCPPFKIVILDEA 146 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~-~~~~~~~~-~~~~~~vliiDe~ 146 (355)
.+++|+.|+|||+.+...+........+.-++.....+..+ ..+...+.. ..... .....+.. ...+..+|+|||+
T Consensus 22 ~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~-~~~a~~i~~~~di~~~~~~~dvViIDEa 99 (234)
T 2orv_A 22 QVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRN-TMEALPACLLRDVAQEALGVAVIGIDEG 99 (234)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-------------CEEEEESSGGGGHHHHTTCSEEEESSG
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCC-eeEEEecCCHHHHHHHhccCCEEEEEch
Confidence 88999999999988776666654433322222211111112 222111100 00000 00000000 0013459999999
Q ss_pred CCCCHHHHHHHHHHhhhccCCccEEEEecC
Q psy17903 147 DSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (355)
Q Consensus 147 d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 176 (355)
+.+.. ...+.+.+.+ .+..+|+++-+
T Consensus 100 QF~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 100 QFFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp GGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred hhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 99974 6667777776 34566767654
No 147
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.97 E-value=0.00069 Score=61.06 Aligned_cols=39 Identities=21% Similarity=0.425 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 53 VVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 53 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++..+...+..+..++++|.|++|+||||+++.++..+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 344444555667777799999999999999999999884
No 148
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.93 E-value=0.00073 Score=54.27 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999984
No 149
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.91 E-value=0.0007 Score=55.40 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=22.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.++|.|++|+||||+++.+++.+..
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~ 29 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRK 29 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999999998854
No 150
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.90 E-value=0.006 Score=56.70 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=23.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCcc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMY 95 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~ 95 (355)
+++.|++|+||||++..++..+.....
T Consensus 100 I~lvG~~GsGKTTt~~kLA~~l~~~G~ 126 (433)
T 3kl4_A 100 IMLVGVQGSGKTTTAGKLAYFYKKRGY 126 (433)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 899999999999999999988854433
No 151
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.88 E-value=0.0088 Score=54.23 Aligned_cols=45 Identities=29% Similarity=0.364 Sum_probs=30.6
Q ss_pred CCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+++++... ..+ .+++.... ..++|.||+|+||||++++++..+.
T Consensus 104 ~~l~~lg~~-~~l---~~l~~~~~-g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 104 LTMEELGMG-EVF---KRVSDVPR-GLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CCTTTTTCC-HHH---HHHHHCSS-EEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCHHHcCCh-HHH---HHHHhCCC-CEEEEECCCCCCHHHHHHHHHhccc
Confidence 356666443 333 33333221 1499999999999999999998874
No 152
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.87 E-value=0.0076 Score=51.17 Aligned_cols=20 Identities=25% Similarity=0.375 Sum_probs=16.6
Q ss_pred eEEEECCCCCCHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAAC 87 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~ 87 (355)
.+++.||+|+|||+++..+.
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHH
Confidence 59999999999998765544
No 153
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.87 E-value=0.0085 Score=50.13 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=18.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++++.+|+|+|||..+...+-..
T Consensus 53 ~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEECCCCCchhhhhhHHHHHh
Confidence 59999999999998776655544
No 154
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.83 E-value=0.00099 Score=54.12 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=22.3
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.++|+|++|+||||+++.+++.+
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHh
Confidence 349999999999999999999997
No 155
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.82 E-value=0.00098 Score=53.46 Aligned_cols=25 Identities=28% Similarity=0.327 Sum_probs=22.7
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+++|.|++|+||||+++.+++.++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3499999999999999999999984
No 156
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.82 E-value=0.0017 Score=63.28 Aligned_cols=42 Identities=21% Similarity=0.231 Sum_probs=29.2
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
|..++..+.+.+..+. .++++.+|+|+|||..+-.++..+..
T Consensus 183 Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHh
Confidence 3444445544454443 45899999999999998888877643
No 157
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.82 E-value=0.00085 Score=54.26 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999999983
No 158
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.81 E-value=0.0067 Score=53.52 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|+||+||||+++.+++.+
T Consensus 5 I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 5 ILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999864
No 159
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.81 E-value=0.00087 Score=55.54 Aligned_cols=25 Identities=28% Similarity=0.277 Sum_probs=22.8
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
..++|.|++|+||||+++.+++.+.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3599999999999999999999983
No 160
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.75 E-value=0.0011 Score=54.08 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999884
No 161
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.75 E-value=0.001 Score=54.48 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
.++|.|++|+||||+++.+++.+...
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 28 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999998643
No 162
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.74 E-value=0.0025 Score=56.14 Aligned_cols=22 Identities=45% Similarity=0.643 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.||||+||||+++.+++.+
T Consensus 36 ivl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 36 FLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEECCTTSCTHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 9999999999999999999886
No 163
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.74 E-value=0.0012 Score=56.93 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.||+|+||||+++.+++.+.
T Consensus 4 i~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhcCC
Confidence 78999999999999999999984
No 164
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.70 E-value=0.0098 Score=54.23 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=17.5
Q ss_pred CeEEEECCCCCCHHHHHHHHHH
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~ 88 (355)
.++++.+|+|+|||..+...+-
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~~~ 66 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLTML 66 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHH
Confidence 4699999999999987654443
No 165
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.70 E-value=0.0041 Score=61.26 Aligned_cols=41 Identities=29% Similarity=0.370 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++.+.+++...+... +-.||.||||||||+++-.+...+..
T Consensus 191 N~~Q~~AV~~al~~~--~~~lI~GPPGTGKT~ti~~~I~~l~~ 231 (646)
T 4b3f_X 191 DTSQKEAVLFALSQK--ELAIIHGPPGTGKTTTVVEIILQAVK 231 (646)
T ss_dssp CHHHHHHHHHHHHCS--SEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC--CceEEECCCCCCHHHHHHHHHHHHHh
Confidence 678888888888643 34799999999999987777766644
No 166
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.68 E-value=0.001 Score=53.53 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+.|.||+|+||||+++.++..+.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999873
No 167
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.68 E-value=0.0014 Score=53.57 Aligned_cols=23 Identities=39% Similarity=0.530 Sum_probs=21.5
Q ss_pred CeEEEECCCCCCHHHHHHHHHHH
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
..++|+|++|+||||+++.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 35999999999999999999998
No 168
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.67 E-value=0.0054 Score=53.10 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.||+|+||||+++.++..+.
T Consensus 28 v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 28 ILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEECSTTCSHHHHHHHHHHHHH
T ss_pred EEEECCCCccHHHHHHHHHHhCC
Confidence 99999999999999999998763
No 169
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.67 E-value=0.0057 Score=66.70 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
++++||||||||+++.+++.+....
T Consensus 1084 vll~G~~GtGKT~la~~~~~ea~k~ 1108 (2050)
T 3cmu_A 1084 VEIYGPESSGKTTLTLQVIAAAQRE 1108 (2050)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999999876543
No 170
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=96.65 E-value=0.0069 Score=53.61 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=31.0
Q ss_pred CCCCcccccHHHHHHHHH---------------HHhcCCCCeEEEECCCCCCHHHHHH-HHHHHhc
Q psy17903 42 KTIDDVIEQQEVVSVLKK---------------CLSGADLPHFLFYGPPGTGKTSTMI-AACHQLF 91 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~---------------~l~~~~~~~~ll~Gp~G~GKt~la~-~l~~~l~ 91 (355)
.+|+++--.+..++.|.. .+..+...++++.+|+|+|||.... .+...+.
T Consensus 92 ~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~ 157 (300)
T 3fmo_B 92 KSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVE 157 (300)
T ss_dssp CCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhh
Confidence 467777656665555432 2223323469999999999998743 4444443
No 171
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.65 E-value=0.0012 Score=54.04 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|++|+||||+++.+++.+
T Consensus 8 I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 8 IIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 8999999999999999999987
No 172
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.65 E-value=0.0039 Score=53.00 Aligned_cols=34 Identities=26% Similarity=0.201 Sum_probs=25.3
Q ss_pred HHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHh
Q psy17903 57 LKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 57 l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l 90 (355)
|...+..+-.+. ++|+||+|+|||+++..++...
T Consensus 13 LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 13 LDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp HHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred HHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 344444443333 8999999999999999999863
No 173
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.63 E-value=0.0085 Score=64.49 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=26.6
Q ss_pred HHHHHHh-cCCCCe--EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 56 VLKKCLS-GADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 56 ~l~~~l~-~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.|.+.+. +|-.+. ++|+||||+|||+++..++....
T Consensus 719 eLD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 4444444 333233 99999999999999999988764
No 174
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.63 E-value=0.0045 Score=57.47 Aligned_cols=96 Identities=20% Similarity=0.199 Sum_probs=51.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhcc--------C--CCCCCCCCCCc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTAS--------G--FNQDGKPCPPF 138 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~--------~--~~~~~~~~~~~ 138 (355)
.++.|+||+|||+++..+++. ...+.+.+. ....+.+++.+......... . ........-+.
T Consensus 164 ~~I~G~aGsGKTt~I~~~~~~-------~~~lVlTpT-~~aa~~l~~kl~~~~~~~~~~~~V~T~dsfL~~~~~~~~~~~ 235 (446)
T 3vkw_A 164 VLVDGVPGCGKTKEILSRVNF-------EEDLILVPG-RQAAEMIRRRANASGIIVATKDNVRTVDSFLMNYGKGARCQF 235 (446)
T ss_dssp EEEEECTTSCHHHHHHHHCCT-------TTCEEEESC-HHHHHHHHHHHTTTSCCCCCTTTEEEHHHHHHTTTSSCCCCC
T ss_pred EEEEcCCCCCHHHHHHHHhcc-------CCeEEEeCC-HHHHHHHHHHhhhcCccccccceEEEeHHhhcCCCCCCCCcC
Confidence 899999999999999877642 112222222 22233444333210000000 0 00000000125
Q ss_pred EEEEEeCCCCCCHHHHHHHHHHhhhccCCccEEEEecC
Q psy17903 139 KIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176 (355)
Q Consensus 139 ~vliiDe~d~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 176 (355)
++|||||+..+.......++..+. . ..+|+.++.
T Consensus 236 d~liiDE~sm~~~~~l~~l~~~~~---~-~~vilvGD~ 269 (446)
T 3vkw_A 236 KRLFIDEGLMLHTGCVNFLVEMSL---C-DIAYVYGDT 269 (446)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHTT---C-SEEEEEECT
T ss_pred CEEEEeCcccCCHHHHHHHHHhCC---C-CEEEEecCc
Confidence 699999999998887777766553 2 567777754
No 175
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.61 E-value=0.0017 Score=53.82 Aligned_cols=24 Identities=25% Similarity=0.261 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999999983
No 176
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.61 E-value=0.0015 Score=52.52 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999883
No 177
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=96.57 E-value=0.0085 Score=49.48 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=15.7
Q ss_pred CeEEEECCCCCCHHHHHHH
Q psy17903 67 PHFLFYGPPGTGKTSTMIA 85 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~ 85 (355)
.++++.+|+|+|||..+..
T Consensus 41 ~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp CCEEEECCSSSTTHHHHHH
T ss_pred CCEEEECCCCCchHHHHHH
Confidence 3599999999999976553
No 178
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.54 E-value=0.0017 Score=53.68 Aligned_cols=24 Identities=33% Similarity=0.665 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 399999999999999999999883
No 179
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.53 E-value=0.0028 Score=52.85 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcC-CCCe-EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 52 EVVSVLKKCLSGA-DLPH-FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 52 ~~~~~l~~~l~~~-~~~~-~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++++.|...+... .... +.|.||+|+||||+++.++..+.
T Consensus 6 ~~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 6 ALCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3555565555433 2222 89999999999999999999875
No 180
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.51 E-value=0.0016 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.791 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|++|+||||+++.+++.+
T Consensus 7 I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999987
No 181
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.51 E-value=0.002 Score=51.53 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999884
No 182
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=96.50 E-value=0.0089 Score=50.12 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=17.5
Q ss_pred eEEEECCCCCCHHHH-HHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTST-MIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~l-a~~l~~~l 90 (355)
++++.+|+|+|||.. +..+...+
T Consensus 53 ~~lv~~pTGsGKT~~~~~~~l~~l 76 (224)
T 1qde_A 53 DVLAQAQSGTGKTGTFSIAALQRI 76 (224)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 599999999999987 34444444
No 183
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.50 E-value=0.0017 Score=52.85 Aligned_cols=22 Identities=14% Similarity=0.303 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||+|+||||+++.++..+
T Consensus 8 i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999875
No 184
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.46 E-value=0.0022 Score=53.91 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.6
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
..++|.|++|+||||+++.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3489999999999999999999884
No 185
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.46 E-value=0.0038 Score=51.68 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhcCCC--Ce-EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 51 QEVVSVLKKCLSGADL--PH-FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 51 ~~~~~~l~~~l~~~~~--~~-~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+.++.|.+.+..... +. +.|.|++|+||||+++.++..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3455666666654322 22 99999999999999999998873
No 186
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.46 E-value=0.0022 Score=53.07 Aligned_cols=23 Identities=26% Similarity=0.484 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+.|.||+|+||||+++.++..+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 48999999999999999999987
No 187
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.46 E-value=0.0027 Score=54.78 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.|+||+||||+++.+++.+.
T Consensus 35 i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 35 ILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp EEEESCGGGTTHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999999874
No 188
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.45 E-value=0.0019 Score=53.05 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=22.6
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
..++|.|++|+||||+++.+++.+.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3599999999999999999999873
No 189
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.44 E-value=0.0019 Score=53.85 Aligned_cols=22 Identities=32% Similarity=0.699 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.||||+||+|.|+.+++.+
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 190
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=96.44 E-value=0.021 Score=49.87 Aligned_cols=39 Identities=8% Similarity=0.014 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
-.+.+.+.+..++.. .+.++.+|+|+|||..+..++...
T Consensus 114 l~~~Q~~ai~~~l~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 114 PHWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp CCHHHHHHHHHHHHH---SEEEECCCTTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHhc---CCeEEEcCCCCCcHHHHHHHHHHH
Confidence 455566666666664 246889999999999997777654
No 191
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.43 E-value=0.002 Score=52.79 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.|++|+||||+++.+++.+.
T Consensus 6 I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 6 VFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999873
No 192
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=96.41 E-value=0.011 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||+|+||||+++.++....
T Consensus 32 ~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 32 VVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp EEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEcCCCchHHHHHHHHHcCCC
Confidence 88999999999999999998653
No 193
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=96.40 E-value=0.015 Score=47.97 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=17.5
Q ss_pred eEEEECCCCCCHHHHHHH-HHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIA-ACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~-l~~~l 90 (355)
++++.+|+|+|||..+.. +...+
T Consensus 40 ~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 40 DLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CEEEECCCCChHHHHHHHHHHHHH
Confidence 599999999999987444 44443
No 194
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.40 E-value=0.018 Score=52.38 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=27.9
Q ss_pred CcEEEEEeCC-CCCCHHHHHHHHHHhhhccC--CccEEEEecCCc
Q psy17903 137 PFKIVILDEA-DSMTHAAQAALRRTMEKETK--STRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~-d~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 178 (355)
+.+++++||- ..|.......++..|.+... ...+|++|++..
T Consensus 159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 203 (372)
T 1v43_A 159 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV 203 (372)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 4569999996 45666666677666654321 456777887654
No 195
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.38 E-value=0.0021 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.206 Sum_probs=22.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|.|++|+||||+++.+++.+..
T Consensus 7 I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 7 IAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhh
Confidence 899999999999999999999854
No 196
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=96.38 E-value=0.02 Score=51.91 Aligned_cols=42 Identities=14% Similarity=0.210 Sum_probs=29.5
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhcc--CCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKET--KSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~ 178 (355)
+.+++++||.- .|.+..+..++++|.+.. ....+|++|.+..
T Consensus 181 ~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~ 225 (366)
T 3tui_C 181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD 225 (366)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 44699999974 567777777777776542 2456777887654
No 197
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.37 E-value=0.01 Score=54.65 Aligned_cols=39 Identities=26% Similarity=0.395 Sum_probs=23.3
Q ss_pred CcEEEEEeCCCCCCHHH-HHHHHHHhhhccCCccEEEEec
Q psy17903 137 PFKIVILDEADSMTHAA-QAALRRTMEKETKSTRFCLICN 175 (355)
Q Consensus 137 ~~~vliiDe~d~l~~~~-~~~Ll~~le~~~~~~~~Il~~~ 175 (355)
..++|||||+|.+.... ...+...+........+|+.+.
T Consensus 183 ~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SA 222 (414)
T 3eiq_A 183 YIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSA 222 (414)
T ss_dssp TCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECS
T ss_pred cCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEE
Confidence 35699999999874322 2344555555445555555543
No 198
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.36 E-value=0.0025 Score=53.69 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=22.7
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
..++|.|++|+||||+++.+++.+.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3499999999999999999999984
No 199
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.35 E-value=0.0023 Score=52.97 Aligned_cols=24 Identities=25% Similarity=0.386 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+.|.||+|+||||+++.++..+.
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999999884
No 200
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.34 E-value=0.0024 Score=53.61 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999983
No 201
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.34 E-value=0.016 Score=51.41 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|.||+|+||||++..++..+..
T Consensus 107 i~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 107 IMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHHHHHh
Confidence 889999999999999999988753
No 202
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.33 E-value=0.0021 Score=52.83 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999999883
No 203
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.33 E-value=0.0021 Score=53.42 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.||+|+||||+++.+++.+
T Consensus 15 i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 15 LVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp EEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8999999999999999999987
No 204
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.32 E-value=0.0025 Score=53.58 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.||||+||+|.|+.+++.+
T Consensus 32 I~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 32 IFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 7889999999999999999997
No 205
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.32 E-value=0.004 Score=51.76 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
.++|.|++|+||||+++.+++.+...
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 38999999999999999999987543
No 206
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=96.32 E-value=0.01 Score=53.58 Aligned_cols=50 Identities=20% Similarity=0.153 Sum_probs=32.4
Q ss_pred HHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCc----cccceeeecCCC
Q psy17903 57 LKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDM----YRERILELNASD 106 (355)
Q Consensus 57 l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~ 106 (355)
|...+.+|-.+. ++|+||||+|||+++..++....... ....++.++...
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 444444443333 89999999999999999998742211 123456666554
No 207
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.31 E-value=0.0023 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=22.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|.|++|+||||+++.++..+..
T Consensus 16 i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 16 VWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999998853
No 208
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.30 E-value=0.0026 Score=51.30 Aligned_cols=22 Identities=32% Similarity=0.685 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|++|+||||+++.++..+
T Consensus 11 i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 11 YVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHhh
Confidence 8999999999999999999887
No 209
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.30 E-value=0.0025 Score=52.58 Aligned_cols=24 Identities=21% Similarity=0.401 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 378999999999999999999984
No 210
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.28 E-value=0.0027 Score=52.53 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|.|++|+||||+++.+++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999987
No 211
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.27 E-value=0.0025 Score=52.09 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=22.0
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999873
No 212
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.27 E-value=0.0014 Score=54.63 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=20.0
Q ss_pred CcEEEEEeCCCCCCHHHHHHHHHHh
Q psy17903 137 PFKIVILDEADSMTHAAQAALRRTM 161 (355)
Q Consensus 137 ~~~vliiDe~d~l~~~~~~~Ll~~l 161 (355)
+..+|+|||++.++++..+.+..+.
T Consensus 101 ~~dvV~IDEaQFf~~~~v~~l~~la 125 (219)
T 3e2i_A 101 NVDVIGIDEVQFFDDEIVSIVEKLS 125 (219)
T ss_dssp TCSEEEECCGGGSCTHHHHHHHHHH
T ss_pred CCCEEEEechhcCCHHHHHHHHHHH
Confidence 3459999999999987777776666
No 213
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.26 E-value=0.012 Score=52.49 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC
Q psy17903 55 SVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (355)
Q Consensus 55 ~~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 105 (355)
..|.+.+ .|-.+. ++|.|+||+|||+++..++....... ..++.++..
T Consensus 56 ~~LD~~l-gGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE 105 (315)
T 3bh0_A 56 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE 105 (315)
T ss_dssp HHHHHHH-SSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC
Confidence 3444444 443333 99999999999999999987764332 244555443
No 214
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.26 E-value=0.0043 Score=51.96 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=36.2
Q ss_pred ccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 47 VIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 47 ~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
+-.+.+..+.+.........+.++|.|++|+||||++..++..+..
T Consensus 11 l~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred HhhcHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3355666777777776666667999999999999999999998743
No 215
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.26 E-value=0.0035 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=22.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999999983
No 216
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.25 E-value=0.0016 Score=52.89 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=18.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHST
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999999874
No 217
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.24 E-value=0.0023 Score=54.14 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 499999999999999999999873
No 218
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.22 E-value=0.0022 Score=52.43 Aligned_cols=22 Identities=32% Similarity=0.533 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.||+|+||||+++.++...
T Consensus 12 i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 12 LLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEECTTSCHHHHHHHHHTCS
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 8999999999999999998763
No 219
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.21 E-value=0.003 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.511 Sum_probs=21.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|+||+|+||||+++.+....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 38999999999999999999885
No 220
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.21 E-value=0.0098 Score=49.97 Aligned_cols=23 Identities=22% Similarity=0.219 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||+|+||||+++.++..+.
T Consensus 28 ~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 28 TEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998653
No 221
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=96.21 E-value=0.013 Score=52.86 Aligned_cols=34 Identities=21% Similarity=0.293 Sum_probs=23.1
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 55 ~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
..+..++.++ .++++.+|+|+|||..+...+...
T Consensus 35 ~~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~ 68 (367)
T 1hv8_A 35 KVIPLFLNDE--YNIVAQARTGSGKTASFAIPLIEL 68 (367)
T ss_dssp HHHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHHH
T ss_pred HHHHHHhCCC--CCEEEECCCCChHHHHHHHHHHHH
Confidence 3334444432 369999999999999876655544
No 222
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.21 E-value=0.0034 Score=55.90 Aligned_cols=24 Identities=29% Similarity=0.484 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.||+|+|||+++..+++.+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 389999999999999999999983
No 223
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.19 E-value=0.0072 Score=50.73 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
+++....++........+.++|.|.+|+|||+++..++......
T Consensus 22 ~~~~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 22 NKRLADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 34455666666665555669999999999999999999987543
No 224
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.16 E-value=0.04 Score=51.73 Aligned_cols=23 Identities=17% Similarity=0.340 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.|+||+|||+++..++..+.
T Consensus 206 iiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 206 IIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999998764
No 225
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.15 E-value=0.0034 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.|++|+||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999874
No 226
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.15 E-value=0.037 Score=50.74 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=18.1
Q ss_pred CeEEEECCCCCCHHHHHH-HHHHHh
Q psy17903 67 PHFLFYGPPGTGKTSTMI-AACHQL 90 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~-~l~~~l 90 (355)
.++++.+|+|+|||..+. .+...+
T Consensus 65 ~~~lv~apTGsGKT~~~~~~~~~~~ 89 (412)
T 3fht_A 65 QNLIAQSQSGTGKTAAFVLAMLSQV 89 (412)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCchHHHHHHHHHHHHh
Confidence 459999999999998763 344444
No 227
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.14 E-value=0.0035 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.|++|+||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999873
No 228
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.13 E-value=0.0079 Score=52.93 Aligned_cols=23 Identities=39% Similarity=0.729 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.|++|+||||+++.++..+.
T Consensus 34 i~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 34 IFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 89999999999999999999875
No 229
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.11 E-value=0.0032 Score=52.66 Aligned_cols=24 Identities=17% Similarity=0.258 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999873
No 230
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.11 E-value=0.0035 Score=53.67 Aligned_cols=24 Identities=25% Similarity=0.503 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+.|.||+|+||||+++.+++.++
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 499999999999999999998874
No 231
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.10 E-value=0.0036 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.|++|+||||+++.+++.+.
T Consensus 3 I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999873
No 232
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.06 E-value=0.064 Score=41.90 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++..+...-
T Consensus 6 i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999988653
No 233
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.05 E-value=0.027 Score=50.51 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=29.4
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 53 VVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 53 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.+.+.-.+..|. .++|.||+|+||||+++.++..+.
T Consensus 160 ~l~~l~~~i~~g~--~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 160 AISAIKDGIAIGK--NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHHHHHTC--CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred HHhhhhhhccCCC--EEEEECCCCCCHHHHHHHHhCCCc
Confidence 5556666666554 589999999999999999998764
No 234
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.04 E-value=0.0036 Score=52.13 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=23.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
.++|.|++|+||||+++.+++.+...
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 49999999999999999999987543
No 235
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.04 E-value=0.012 Score=54.77 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||++..++..+.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 399999999999999999999874
No 236
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.02 E-value=0.0038 Score=52.07 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||+|+||||+++.++..+.
T Consensus 11 i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 11 IVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp EEEECCTTSCHHHHHHHHHHSTT
T ss_pred EEEECcCCCCHHHHHHHHHhhCC
Confidence 89999999999999999998863
No 237
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.01 E-value=0.024 Score=53.06 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 55 SVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 55 ~~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
..|...+ +|-.+. ++|.|+||+|||+++..++....
T Consensus 188 ~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 188 KELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred Hhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3444555 444344 99999999999999999988764
No 238
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.01 E-value=0.0039 Score=50.91 Aligned_cols=22 Identities=36% Similarity=0.682 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.||+|+||||+++.++...
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCcHHHHHHHHhccc
Confidence 7899999999999999998754
No 239
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.00 E-value=0.0042 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+.|.||+|+||||+++.+++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 240
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.98 E-value=0.08 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|.|++|+||||++..++..+..
T Consensus 104 I~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 104 IMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999988754
No 241
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.97 E-value=0.012 Score=54.09 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=26.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCc----cccceeeecCCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDM----YRERILELNASD 106 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~ 106 (355)
+.|+||+|+|||+++..++-...... .....+.++...
T Consensus 181 ~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 181 TELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 99999999999999998875432211 123456666654
No 242
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.97 E-value=0.0091 Score=47.23 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++..+...-
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999998764
No 243
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.95 E-value=0.016 Score=47.10 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+|||+++..+...-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCcCHHHHHHHHhcCCC
Confidence 399999999999999999988653
No 244
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.95 E-value=0.0042 Score=51.35 Aligned_cols=22 Identities=41% Similarity=0.646 Sum_probs=20.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||+|+||||+++.++..+
T Consensus 10 i~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 10 FIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 8899999999999999999875
No 245
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.94 E-value=0.013 Score=52.43 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=27.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCc----cccceeeecCCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDM----YRERILELNASD 106 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~----~~~~~~~~~~~~ 106 (355)
++|+||||+|||+++..++....... ....++.++...
T Consensus 110 ~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 110 TEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 99999999999999999998753220 123455666554
No 246
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.94 E-value=0.015 Score=53.98 Aligned_cols=50 Identities=18% Similarity=0.279 Sum_probs=35.0
Q ss_pred CCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.+++++.-.......|.+.+. .....++|.||+|+||||++++++..+..
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~~-~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLIK-RPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHHT-SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred CCHHHcCCCHHHHHHHHHHHH-hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 345666545555556666653 21113899999999999999999998854
No 247
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.94 E-value=0.0071 Score=51.96 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhc---CCCCeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 52 EVVSVLKKCLSG---ADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 52 ~~~~~l~~~l~~---~~~~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+++.+.-.+.. + ..+.|.|++|+||||+++.+++.+.
T Consensus 33 ~~l~~~~~~i~~~l~g--~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNG--RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp HHHHHHHHTTHHHHTT--CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhcCC--CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 445555444443 3 3599999999999999999999883
No 248
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.92 E-value=0.0055 Score=49.58 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.|++|+||||+++.++..+
T Consensus 8 i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 8 VWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8899999999999999999987
No 249
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=95.91 E-value=0.012 Score=50.93 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=15.2
Q ss_pred eEEEECCCCCCHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIA 85 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~ 85 (355)
++++.+|+|+|||..+..
T Consensus 93 ~~lv~a~TGsGKT~~~~l 110 (262)
T 3ly5_A 93 DLLAAAKTGSGKTLAFLI 110 (262)
T ss_dssp CCEECCCTTSCHHHHHHH
T ss_pred cEEEEccCCCCchHHHHH
Confidence 589999999999987543
No 250
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.91 E-value=0.053 Score=51.08 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=18.2
Q ss_pred CCeEEEECCCCCCHHHHHH-HHHHHh
Q psy17903 66 LPHFLFYGPPGTGKTSTMI-AACHQL 90 (355)
Q Consensus 66 ~~~~ll~Gp~G~GKt~la~-~l~~~l 90 (355)
..++++.||+|+|||..+. .+...+
T Consensus 131 ~~~~l~~a~TGsGKT~~~~l~il~~l 156 (479)
T 3fmp_B 131 PQNLIAQSQSGTGKTAAFVLAMLSQV 156 (479)
T ss_dssp CCEEEEECCSSSSHHHHHHHHHHTTC
T ss_pred CCcEEEEcCCCCchhHHHHHHHHHHH
Confidence 3469999999999998743 344333
No 251
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.90 E-value=0.0038 Score=51.58 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=21.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|.|++|+||||+++.+++.+
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999987
No 252
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=95.89 E-value=0.065 Score=48.71 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=17.9
Q ss_pred CeEEEECCCCCCHHHHHHHHHHH
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.++++.+|+|+|||..+...+-.
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999876554443
No 253
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.88 E-value=0.0047 Score=50.41 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||+|+||||+++.++..+.
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999998763
No 254
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.87 E-value=0.0048 Score=51.04 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+.|.||+|+||||+++.++..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 38999999999999999999876
No 255
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.87 E-value=0.083 Score=45.24 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+.|.||+|+||||+++.+++.++
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999999874
No 256
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.86 E-value=0.011 Score=47.97 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|++|+|||++++.+....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHHhhc
Confidence 9999999999999998776654
No 257
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.85 E-value=0.0082 Score=48.20 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=26.8
Q ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceee
Q psy17903 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILE 101 (355)
Q Consensus 66 ~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~ 101 (355)
.+-+.|.|++|+||||++..++..+....++..++.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 344899999999999999999998854433333333
No 258
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.85 E-value=0.0051 Score=50.78 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.||+|+||||+++.+++..
T Consensus 22 ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 22 LVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHhhC
Confidence 8999999999999999999875
No 259
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=95.84 E-value=0.018 Score=48.79 Aligned_cols=18 Identities=33% Similarity=0.464 Sum_probs=15.2
Q ss_pred eEEEECCCCCCHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIA 85 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~ 85 (355)
++++.+|+|+|||..+..
T Consensus 69 ~~li~apTGsGKT~~~~l 86 (237)
T 3bor_A 69 DVIAQAQSGTGKTATFAI 86 (237)
T ss_dssp CEEECCCSSHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHH
Confidence 599999999999987543
No 260
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.84 E-value=0.011 Score=48.27 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+++.|++|+|||+++.++...-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 39999999999999999998763
No 261
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.82 E-value=0.026 Score=47.42 Aligned_cols=18 Identities=28% Similarity=0.506 Sum_probs=15.2
Q ss_pred eEEEECCCCCCHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIA 85 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~ 85 (355)
++++.+|+|+|||..+..
T Consensus 59 ~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 59 DLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred CEEEECCCCChHHHHHHH
Confidence 589999999999986543
No 262
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.82 E-value=0.0059 Score=50.46 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=21.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+.|.||+|+||||+++.+...+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 38999999999999999999876
No 263
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.81 E-value=0.026 Score=45.59 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=21.0
Q ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Q psy17903 65 DLPHFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 65 ~~~~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
....+++.|++|+|||+++.++...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3334999999999999999999853
No 264
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.81 E-value=0.0084 Score=52.91 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.||+|+|||+++..+++.+.
T Consensus 13 i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 13 IFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEECCCccCHHHHHHHHHHhCC
Confidence 88999999999999999999974
No 265
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=95.81 E-value=0.1 Score=47.80 Aligned_cols=21 Identities=29% Similarity=0.368 Sum_probs=16.8
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~ 88 (355)
++++.+|+|+|||..+...+-
T Consensus 76 ~~lv~a~TGsGKT~~~~~~~~ 96 (410)
T 2j0s_A 76 DVIAQSQSGTGKTATFSISVL 96 (410)
T ss_dssp CEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCchHHHHHHHH
Confidence 599999999999977654443
No 266
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=95.79 E-value=0.045 Score=51.07 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=26.9
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+.+.+.+..++.+ ++++.+|+|+|||..+-.++...
T Consensus 11 ~~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 11 RIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHH
Confidence 34455555555543 68999999999999988876665
No 267
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=95.76 E-value=0.027 Score=48.20 Aligned_cols=18 Identities=22% Similarity=0.379 Sum_probs=15.3
Q ss_pred CeEEEECCCCCCHHHHHH
Q psy17903 67 PHFLFYGPPGTGKTSTMI 84 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~ 84 (355)
.++++.+|+|+|||..+.
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 359999999999998754
No 268
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.76 E-value=0.028 Score=44.76 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++..+...-
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 9999999999999999998653
No 269
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.75 E-value=0.015 Score=47.06 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|++|+|||+++..+...-
T Consensus 14 i~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 14 FLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999998743
No 270
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.74 E-value=0.029 Score=56.38 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=18.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.+++.||+|+|||+++..++..
T Consensus 111 ~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 111 IMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999977666544
No 271
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.73 E-value=0.023 Score=44.64 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+++.|++|+|||+++..+...-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998753
No 272
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.73 E-value=0.0083 Score=47.37 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+++.|++|+|||+++..+....
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 38999999999999999998754
No 273
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.72 E-value=0.02 Score=53.47 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 53 VVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 53 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+++.|..+.++. .++|+|++|+|||+++..++....
T Consensus 141 ~ID~L~pi~kGq---~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLLAPYIKGG---KIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHHSCEETTC---EEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCC---EEEEECCCCCCccHHHHHHHhhhh
Confidence 555555554433 489999999999999999987754
No 274
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.72 E-value=0.019 Score=51.20 Aligned_cols=35 Identities=34% Similarity=0.449 Sum_probs=25.6
Q ss_pred HHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHh
Q psy17903 56 VLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 56 ~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.|...+.+|-.+. ++|+||||+|||+++..++...
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444444443333 9999999999999999999763
No 275
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.72 E-value=0.026 Score=53.77 Aligned_cols=24 Identities=21% Similarity=0.307 Sum_probs=18.3
Q ss_pred CeEEEECCCCCCHHHHHHH-HHHHh
Q psy17903 67 PHFLFYGPPGTGKTSTMIA-ACHQL 90 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~-l~~~l 90 (355)
.++++.+|+|+|||..+.. +...+
T Consensus 159 ~~~ll~apTGsGKT~~~~~~il~~l 183 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFALTMLSRV 183 (508)
T ss_dssp CCEEEECCSSTTSHHHHHHHHHHHS
T ss_pred CCEEEECCCCccHHHHHHHHHHHHH
Confidence 4599999999999987544 44444
No 276
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.71 E-value=0.019 Score=45.74 Aligned_cols=23 Identities=17% Similarity=0.384 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+++.|++|+|||+++.++...-
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 39999999999999999998754
No 277
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.71 E-value=0.0068 Score=51.42 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=22.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+.|.||+|+||||+++.+++.+.
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999983
No 278
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.70 E-value=0.0081 Score=49.39 Aligned_cols=22 Identities=23% Similarity=0.220 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|+|++|+||||+++.+++.+
T Consensus 15 IgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 15 IGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999999986
No 279
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.70 E-value=0.0069 Score=50.48 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 389999999999999999999874
No 280
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.69 E-value=0.0053 Score=54.90 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.++|.||+|+|||+++..+++.+.+
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~ 66 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPL 66 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCC
Confidence 3899999999999999999999853
No 281
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.68 E-value=0.088 Score=48.07 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=17.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
++++.+|+|+|||..+...+-.
T Consensus 60 ~~li~a~TGsGKT~~~~~~~~~ 81 (400)
T 1s2m_A 60 DILARAKNGTGKTAAFVIPTLE 81 (400)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEECCCCcHHHHHHHHHHHH
Confidence 4899999999999876554443
No 282
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=95.67 E-value=0.018 Score=61.38 Aligned_cols=60 Identities=13% Similarity=0.284 Sum_probs=39.3
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCcccccc----ccCCeeeEEecCC
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP----LTSRCSKFRFKPL 196 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~----l~sr~~~i~~~~~ 196 (355)
+.+|+++||+- .+..+....+.+.+++...+..+|+++++.+.+..+ +.+.++++++..+
T Consensus 1235 ~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth 1299 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTH 1299 (1321)
T ss_dssp CCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCH
Confidence 44699999985 344455566777777666666777788776543221 3456677877654
No 283
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.67 E-value=0.045 Score=44.94 Aligned_cols=23 Identities=17% Similarity=0.231 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|.|++|+|||+++..+...-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 39999999999999999997643
No 284
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.63 E-value=0.073 Score=45.13 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=17.2
Q ss_pred eEEEECCCCCCHHHHHH-HHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMI-AACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~-~l~~~l 90 (355)
++++.+|+|+|||..+. .+...+
T Consensus 68 ~~l~~a~TGsGKT~~~~l~~l~~l 91 (245)
T 3dkp_A 68 ELLASAPTGSGKTLAFSIPILMQL 91 (245)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 59999999999998743 334444
No 285
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=95.63 E-value=0.015 Score=48.69 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|.+|+|||+++..+...-
T Consensus 16 ivlvGd~~VGKTsLi~r~~~~~ 37 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMYDS 37 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCcCHHHHHHHHHhCC
Confidence 8999999999999999988653
No 286
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.61 E-value=0.0074 Score=51.89 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.|++|+||||+++.+++.+.
T Consensus 25 I~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 25 IGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 89999999999999999999874
No 287
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.60 E-value=0.0035 Score=51.91 Aligned_cols=40 Identities=15% Similarity=0.093 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 51 QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 51 ~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+..+.+.+.......-.+++.|++|+|||+++..+....
T Consensus 15 ~~~~~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~ 54 (204)
T 4gzl_A 15 VPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNA 54 (204)
T ss_dssp ---------------CEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccchhHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCC
Confidence 3334444444433333349999999999999999998653
No 288
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.60 E-value=0.0064 Score=50.26 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+.|.|++|+||||+++.++. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 6
No 289
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.59 E-value=0.0093 Score=53.47 Aligned_cols=24 Identities=25% Similarity=0.452 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.||+|+|||+++..++..+.
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 389999999999999999999984
No 290
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.58 E-value=0.0083 Score=49.59 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=22.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+.|.|++|+||||+++.+++.++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 488999999999999999999884
No 291
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=95.56 E-value=0.035 Score=46.27 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.7
Q ss_pred eEEEECCCCCCHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAA 86 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l 86 (355)
++++.+|+|+|||..+...
T Consensus 43 ~~lv~a~TGsGKT~~~~~~ 61 (219)
T 1q0u_A 43 SMVGQSQTGTGKTHAYLLP 61 (219)
T ss_dssp CEEEECCSSHHHHHHHHHH
T ss_pred CEEEECCCCChHHHHHHHH
Confidence 5899999999999875443
No 292
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.54 E-value=0.051 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=22.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
+++.|.||+||||+++.+++.+..
T Consensus 42 IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 42 IVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999998753
No 293
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.53 E-value=0.088 Score=46.28 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
+.+.|++|+||||++..++..+..
T Consensus 101 i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 101 WFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp EEEECCTTTTHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 778899999999999999988753
No 294
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=95.52 E-value=0.04 Score=51.84 Aligned_cols=39 Identities=26% Similarity=0.284 Sum_probs=29.6
Q ss_pred ccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
-.+.+.+.+..++..+ .+++.||+|+|||..+..++...
T Consensus 94 l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 94 LRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp BCHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHc
Confidence 3556666666666543 48999999999999998877766
No 295
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=95.51 E-value=0.012 Score=47.47 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=26.7
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeec
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 103 (355)
+-+.|.|++|+||||++..+...+.........+..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 4589999999999999999998875333333334433
No 296
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=95.51 E-value=0.074 Score=50.49 Aligned_cols=38 Identities=8% Similarity=0.018 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+.+...+..++.. .+.+++||+|+|||..+..++...
T Consensus 115 ~~~Q~~ai~~~~~~---~~~ll~~~tGsGKT~~~~~~~~~~ 152 (510)
T 2oca_A 115 HWYQKDAVFEGLVN---RRRILNLPTSAGRSLIQALLARYY 152 (510)
T ss_dssp CHHHHHHHHHHHHH---SEEEEECCSTTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHHHH
Confidence 44555555555554 358999999999999987776654
No 297
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.49 E-value=0.0084 Score=53.02 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.||+|+|||+++..+++.+.
T Consensus 6 i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 6 VAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp EEEECCTTSCHHHHHHHHHHTTT
T ss_pred EEEECCCcCCHHHHHHHHHHhCc
Confidence 78999999999999999999874
No 298
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.49 E-value=0.023 Score=44.81 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+++.|++|+|||+++.++...
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 899999999999999999864
No 299
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.49 E-value=0.024 Score=51.42 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=27.4
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeec
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELN 103 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 103 (355)
+.+.|+|++|+||||++..++..+.....+..++..+
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 3499999999999999999998875443333344443
No 300
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.48 E-value=0.063 Score=48.13 Aligned_cols=23 Identities=26% Similarity=0.364 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.|+||+|||+++..++....
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999988764
No 301
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.47 E-value=0.0038 Score=51.97 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.|++|+||||+++.+++.+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999999885
No 302
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.46 E-value=0.007 Score=50.14 Aligned_cols=20 Identities=25% Similarity=0.209 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~ 88 (355)
+.|.|++|+||||+++.++.
T Consensus 5 i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEECSTTSCHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999987
No 303
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.46 E-value=0.059 Score=42.18 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+++.|++|+|||+++..+...-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998764
No 304
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.46 E-value=0.017 Score=51.51 Aligned_cols=23 Identities=22% Similarity=0.111 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||+|+||||+++.+...+.
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999998875
No 305
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.42 E-value=0.033 Score=54.56 Aligned_cols=40 Identities=38% Similarity=0.490 Sum_probs=31.0
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++.+...+...+.. +..+|.||||||||+++..++..+..
T Consensus 182 n~~Q~~av~~~l~~---~~~li~GppGTGKT~~~~~~i~~l~~ 221 (624)
T 2gk6_A 182 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLAR 221 (624)
T ss_dssp CHHHHHHHHHHHTC---SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhcC---CCeEEECCCCCCHHHHHHHHHHHHHH
Confidence 56667777766642 35899999999999999888887653
No 306
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.42 E-value=0.009 Score=49.64 Aligned_cols=23 Identities=26% Similarity=0.197 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||+|+||||+++.++..+.
T Consensus 9 i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 9 IGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999874
No 307
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.41 E-value=0.0077 Score=48.45 Aligned_cols=17 Identities=24% Similarity=0.512 Sum_probs=16.1
Q ss_pred EEEECCCCCCHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIA 85 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~ 85 (355)
+.|.||+|+||||+++.
T Consensus 12 ~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 89999999999999995
No 308
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.40 E-value=0.019 Score=44.97 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+++.|++|+|||+++..+...-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999998754
No 309
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.40 E-value=0.032 Score=45.69 Aligned_cols=23 Identities=17% Similarity=0.317 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|.|++|+|||+++..+...-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 39999999999999999998653
No 310
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.39 E-value=0.02 Score=46.40 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++..++..-
T Consensus 24 i~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 24 LVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 9999999999999999998753
No 311
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.39 E-value=0.011 Score=47.03 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||.|+||||+++.++..+
T Consensus 36 v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 36 VYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 8899999999999999999987
No 312
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.38 E-value=0.01 Score=50.25 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=22.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|.|++|+||||+++.+++.+..
T Consensus 29 i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 29 ITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHhc
Confidence 899999999999999999999854
No 313
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.36 E-value=0.0095 Score=50.00 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||+|+||||+++.++..+
T Consensus 26 ~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 26 LVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8999999999999999999876
No 314
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.36 E-value=0.03 Score=44.96 Aligned_cols=22 Identities=18% Similarity=0.323 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|++|+|||+++..+...-
T Consensus 21 i~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 21 VIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhhCC
Confidence 9999999999999999998653
No 315
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=95.35 E-value=0.0095 Score=55.07 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+.|.||+|+||||++++++...
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48899999999999999998743
No 316
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.33 E-value=0.032 Score=46.27 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.++|.|++|+|||+++.++...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 3999999999999999998754
No 317
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.33 E-value=0.023 Score=44.72 Aligned_cols=22 Identities=18% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++.++...-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998654
No 318
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.33 E-value=0.24 Score=46.00 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=22.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
+++.|++|+||||++..++..+...
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHh
Confidence 8889999999999999999988643
No 319
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.28 E-value=0.0081 Score=49.38 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.||+|+|||++|..+++...
T Consensus 37 ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 37 VLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 89999999999999999998753
No 320
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.28 E-value=0.011 Score=49.18 Aligned_cols=22 Identities=18% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||+|+||||+++.++..+
T Consensus 23 ~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 23 VVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 8899999999999999999886
No 321
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.28 E-value=0.068 Score=43.16 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|++|+|||+++..+...-
T Consensus 25 i~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 25 LTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 9999999999999999998653
No 322
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=95.27 E-value=0.089 Score=55.22 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=27.7
Q ss_pred ccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHH
Q psy17903 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAAC 87 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~ 87 (355)
.|..++..+...+.++...+++++||+|+|||..+...+
T Consensus 607 ~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 607 DQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp HHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHH
Confidence 345555555555556665579999999999998876444
No 323
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.27 E-value=0.011 Score=49.17 Aligned_cols=42 Identities=33% Similarity=0.464 Sum_probs=29.3
Q ss_pred ccCCCCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHH
Q psy17903 38 KYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 38 k~~p~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
..+|+++ |+..+++. +..|. .+.|.||.|+||||+++.++..
T Consensus 4 ~i~pk~~----g~~~~l~~----i~~Ge--~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 4 VIRPKTL----GQKHYVDA----IDTNT--IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCCCSH----HHHHHHHH----HHHCS--EEEEECCTTSSTTHHHHHHHHH
T ss_pred ccccCCH----hHHHHHHh----ccCCC--EEEEECCCCCCHHHHHHHHhcC
Confidence 3467765 33334433 34342 3789999999999999999876
No 324
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.26 E-value=0.13 Score=41.79 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.+++.|++|+|||++++.+...
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4999999999999999877664
No 325
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.22 E-value=0.034 Score=44.99 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|.|++|+|||+++..+...-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 39999999999999999998653
No 326
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.20 E-value=0.066 Score=51.91 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=28.6
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 178 (355)
+.+++++||.- .+.+.....+.+.+.+...+..+|+++++..
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 45799999985 5566666667777765444555677777654
No 327
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.20 E-value=0.11 Score=48.40 Aligned_cols=47 Identities=13% Similarity=0.130 Sum_probs=31.1
Q ss_pred HHHHHHHhcCCCCe--EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC
Q psy17903 55 SVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (355)
Q Consensus 55 ~~l~~~l~~~~~~~--~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 104 (355)
..|.+.+ +|-.+. ++|.|+||+|||+++..++...... +..++.++.
T Consensus 185 ~~LD~~l-gGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~--g~~vl~fSl 233 (444)
T 3bgw_A 185 TELDRMT-YGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN--DDVVNLHSL 233 (444)
T ss_dssp HHHHHHH-SSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT--TCEEEEECS
T ss_pred HHHHhhc-CCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc--CCEEEEEEC
Confidence 3344444 343333 9999999999999999998876433 224444444
No 328
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.19 E-value=0.013 Score=47.93 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=40.7
Q ss_pred CcEEEEEeCCCCC---CHHHHHHHHHHhhhccCCccEEE-Ee--cCC-ccccccccC--CeeeEEecCCCHHHHHHHHHH
Q psy17903 137 PFKIVILDEADSM---THAAQAALRRTMEKETKSTRFCL-IC--NYV-SCIIQPLTS--RCSKFRFKPLAENTMLTRLQY 207 (355)
Q Consensus 137 ~~~vliiDe~d~l---~~~~~~~Ll~~le~~~~~~~~Il-~~--~~~-~~l~~~l~s--r~~~i~~~~~~~~~~~~~l~~ 207 (355)
+..++|+||++.+ .....+.|.++++... ++++. ++ ++. ..+...+.. .+.++.+.+-+.+.+..-+..
T Consensus 105 ~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~--~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~~ 182 (189)
T 2i3b_A 105 GQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG--TIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIVT 182 (189)
T ss_dssp CCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS--CCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHHHH
T ss_pred CCCEEEEeCCCccccccHHHHHHHHHHHhCCC--cEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHHHH
Confidence 4569999998766 3456777888887542 33331 12 232 234455544 356888877676655555443
No 329
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.18 E-value=0.011 Score=50.44 Aligned_cols=20 Identities=35% Similarity=0.380 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~ 88 (355)
+.|.||+|+||||+++.++.
T Consensus 33 ~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999984
No 330
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=95.18 E-value=0.055 Score=45.51 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=17.4
Q ss_pred eEEEECCCCCCHHHHH-HHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTM-IAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la-~~l~~~l 90 (355)
++++.+|+|+|||... ..+...+
T Consensus 63 ~~l~~a~TGsGKT~~~~l~~l~~l 86 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFSTIALDSL 86 (230)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCcHHHHHHHHHHHHH
Confidence 5999999999999874 3344444
No 331
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=95.16 E-value=0.058 Score=45.48 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.3
Q ss_pred eEEEECCCCCCHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIA 85 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~ 85 (355)
++++.+|+|+|||..+..
T Consensus 64 ~~li~a~TGsGKT~~~~~ 81 (236)
T 2pl3_A 64 DVLGAAKTGSGKTLAFLV 81 (236)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred CEEEEeCCCCcHHHHHHH
Confidence 599999999999986543
No 332
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.14 E-value=0.025 Score=44.48 Aligned_cols=22 Identities=18% Similarity=0.455 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++.++...-
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 8999999999999999998753
No 333
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.14 E-value=0.011 Score=48.60 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+.|.|++|+||||+++.+++.
T Consensus 11 I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEECTTSCHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHC
Confidence 899999999999999999986
No 334
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.12 E-value=0.0088 Score=48.40 Aligned_cols=22 Identities=18% Similarity=0.268 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++..+...-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998753
No 335
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.12 E-value=0.037 Score=44.50 Aligned_cols=22 Identities=23% Similarity=0.419 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++.++...-
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999998654
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.11 E-value=0.0095 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=20.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.|++|+||||+++.+++.+
T Consensus 24 i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 8899999999999999999875
No 337
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.10 E-value=0.028 Score=45.75 Aligned_cols=21 Identities=33% Similarity=0.455 Sum_probs=18.9
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
++|.|++|+|||+++..+...
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 999999999999999998754
No 338
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.08 E-value=0.042 Score=45.89 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=23.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDM 94 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~ 94 (355)
+.|.|++|+||||.++.+++.+....
T Consensus 9 i~~eG~~gsGKsT~~~~l~~~l~~~~ 34 (213)
T 4edh_A 9 VTLEGPEGAGKSTNRDYLAERLRERG 34 (213)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHTTT
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 89999999999999999999986543
No 339
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=95.07 E-value=0.046 Score=49.71 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=17.1
Q ss_pred eEEEECCCCCCHHHHHH-HHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMI-AACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~-~l~~~l 90 (355)
++++.+|+|+|||..+. .+...+
T Consensus 60 ~~lv~~~TGsGKT~~~~~~~~~~l 83 (394)
T 1fuu_A 60 DVLAQAQSGTGKTGTFSIAALQRI 83 (394)
T ss_dssp CEEECCCSSHHHHHHHHHHHHHHC
T ss_pred CEEEECCCCChHHHHHHHHHHHHh
Confidence 58999999999998743 334443
No 340
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.07 E-value=0.03 Score=45.85 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|.|++|+|||+++..+...-
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 49999999999999999998653
No 341
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.06 E-value=0.15 Score=48.46 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|.|+||+|||+++..++.....
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTT
T ss_pred EEEeecCCCCchHHHHHHHHHHHH
Confidence 999999999999999999988753
No 342
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.05 E-value=0.029 Score=45.95 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=19.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|++|+|||+++..+...-
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999987653
No 343
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.05 E-value=0.072 Score=43.96 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.2
Q ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
..+++.|++|+|||+++.++...-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 349999999999999999998754
No 344
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.05 E-value=0.012 Score=49.05 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|++|+|||+++..+...-
T Consensus 30 i~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 30 LVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 9999999999999999998753
No 345
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.02 E-value=0.086 Score=44.65 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=15.3
Q ss_pred eEEEECCCCCCHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIA 85 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~ 85 (355)
++++.+|+|+|||.....
T Consensus 68 ~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 68 DMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CEEEEECTTSCHHHHHHH
T ss_pred CEEEECCCcCHHHHHHHH
Confidence 599999999999987543
No 346
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.99 E-value=0.0082 Score=51.14 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
++|+|+||+|||+++..++..
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHH
Confidence 999999999999999887654
No 347
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.98 E-value=0.023 Score=47.25 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+++.|++|+|||+++..+...
T Consensus 37 i~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 37 VVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999999854
No 348
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=94.98 E-value=0.08 Score=53.04 Aligned_cols=40 Identities=20% Similarity=0.191 Sum_probs=31.2
Q ss_pred ccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHH
Q psy17903 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 49 g~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~ 88 (355)
.|..++..+...+..+...++++.||+|+|||..+...+-
T Consensus 372 ~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il 411 (780)
T 1gm5_A 372 AQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAIL 411 (780)
T ss_dssp HHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHH
Confidence 5777777777777766656799999999999998765443
No 349
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.97 E-value=0.032 Score=47.35 Aligned_cols=25 Identities=20% Similarity=0.392 Sum_probs=22.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
+.|.|++|+||||.++.+++.+...
T Consensus 30 i~~eG~~GsGKsT~~~~l~~~l~~~ 54 (236)
T 3lv8_A 30 IVIEGLEGAGKSTAIQVVVETLQQN 54 (236)
T ss_dssp EEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 8999999999999999999998543
No 350
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.96 E-value=0.026 Score=44.37 Aligned_cols=21 Identities=29% Similarity=0.466 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~ 88 (355)
.+++.|++|+|||+++.++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 489999999999999998864
No 351
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.034 Score=45.09 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+++.|++|+|||+++..+...-
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 49999999999999999998753
No 352
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.94 E-value=0.018 Score=48.08 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=21.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+.|.|++|+|||++++.+++.+
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 38999999999999999999987
No 353
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.93 E-value=0.064 Score=47.95 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
+.|.||+|+||||+++.++..+..
T Consensus 132 i~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 132 IMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 999999999999999999988753
No 354
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.92 E-value=0.049 Score=52.90 Aligned_cols=43 Identities=19% Similarity=0.283 Sum_probs=29.6
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCcc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 179 (355)
+.+++++||.- .+.+.....+.+.+.+...+..+|+++++...
T Consensus 497 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 540 (587)
T 3qf4_A 497 KPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT 540 (587)
T ss_dssp CCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHH
Confidence 44699999985 55666666777776655445667778876543
No 355
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.92 E-value=0.015 Score=48.54 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~ 88 (355)
+.|.|++|+||||+++.++.
T Consensus 7 I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 7 VALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999987
No 356
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.92 E-value=0.03 Score=44.96 Aligned_cols=22 Identities=23% Similarity=0.461 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|++|+|||+++.++....
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 8999999999999999998653
No 357
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.022 Score=45.50 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++..+...-
T Consensus 13 i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 13 VMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 9999999999999999998754
No 358
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.90 E-value=0.026 Score=53.58 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 49 EQQEVVSVLKKCLS--GADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 49 g~~~~~~~l~~~l~--~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
..+++.+.+.+... ......++|.|.+|+||||+++++++.+..
T Consensus 376 ~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 376 SYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp SCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 34555566666552 112223999999999999999999999963
No 359
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.89 E-value=0.057 Score=54.35 Aligned_cols=40 Identities=38% Similarity=0.490 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.+.+...+...+.. +..+|.||||||||+++..++..+..
T Consensus 358 n~~Q~~Av~~~l~~---~~~lI~GppGTGKT~ti~~~i~~l~~ 397 (800)
T 2wjy_A 358 NHSQVYAVKTVLQR---PLSLIQGPPGTGKTVTSATIVYHLAR 397 (800)
T ss_dssp CHHHHHHHHHHHTS---SEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhccC---CeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 55666677666642 35899999999999999888887653
No 360
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.89 E-value=0.0067 Score=53.39 Aligned_cols=23 Identities=13% Similarity=0.161 Sum_probs=18.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||+|+||||+++.+++.+.
T Consensus 8 IgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 8 ISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp EEEESCC---CCTHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999999874
No 361
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.89 E-value=0.027 Score=49.72 Aligned_cols=22 Identities=41% Similarity=0.650 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|+||+|+||||+++.++..+
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHhhhc
Confidence 8999999999999999999987
No 362
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=94.88 E-value=0.091 Score=57.29 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=26.0
Q ss_pred CCCCcccccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHH
Q psy17903 42 KTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAA 86 (355)
Q Consensus 42 ~~~~~~vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l 86 (355)
..|..+ ++-+.+.+...+..+ .++++.+|+|+|||.++...
T Consensus 922 ~~f~~f--npiQ~q~~~~l~~~~--~nvlv~APTGSGKTliaela 962 (1724)
T 4f92_B 922 DKFPFF--NPIQTQVFNTVYNSD--DNVFVGAPTGSGKTICAEFA 962 (1724)
T ss_dssp TTCSBC--CHHHHHHHHHHHSCC--SCEEEECCTTSCCHHHHHHH
T ss_pred hcCCCC--CHHHHHHHHHHhcCC--CcEEEEeCCCCCchHHHHHH
Confidence 345443 233334444444443 36999999999999988643
No 363
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.88 E-value=0.041 Score=43.91 Aligned_cols=21 Identities=24% Similarity=0.513 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+++.|++|+|||+++..+...
T Consensus 15 i~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 15 LVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEECCTTSCHHHHHHHHHHC
T ss_pred EEEECcCCCCHHHHHHHHHcC
Confidence 999999999999999999875
No 364
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.86 E-value=0.036 Score=45.04 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++..+...-
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 9999999999999999998754
No 365
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.83 E-value=0.094 Score=42.26 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHHHHH
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+.+++.|++|+|||+++..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35999999999999999998765
No 366
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.82 E-value=0.04 Score=45.96 Aligned_cols=26 Identities=23% Similarity=0.201 Sum_probs=23.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
-+.|.|++|+||||.++.+++.+...
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~ 30 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQL 30 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 38899999999999999999998643
No 367
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.82 E-value=0.019 Score=49.07 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=21.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+-|.||.|+||||+++.++..++
T Consensus 28 igI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 88999999999999999999763
No 368
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.81 E-value=0.029 Score=45.56 Aligned_cols=22 Identities=23% Similarity=0.508 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|++|+|||+++.++...-
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 9999999999999999998754
No 369
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.75 E-value=0.011 Score=50.08 Aligned_cols=22 Identities=27% Similarity=0.407 Sum_probs=14.5
Q ss_pred EEEECCCCCCHHHHHHHHH-HHh
Q psy17903 69 FLFYGPPGTGKTSTMIAAC-HQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~-~~l 90 (355)
+.|.||+|+||||+++.++ ..+
T Consensus 30 i~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 30 LVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp EEEECSCC----CHHHHHHC---
T ss_pred EEEECCCCCCHHHHHHHHHhcCC
Confidence 8899999999999999999 765
No 370
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.75 E-value=0.048 Score=48.30 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||+|+||||+++.++..+.
T Consensus 83 igI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 83 ISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999999999874
No 371
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.73 E-value=0.037 Score=44.53 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.+++.|++|+|||+++.++...
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999998754
No 372
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.71 E-value=0.026 Score=46.55 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.6
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|.|++|+|||+++..+....
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 39999999999999999998754
No 373
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.71 E-value=0.019 Score=50.20 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|+|++|+||||+++.++ .+
T Consensus 78 I~I~G~~GSGKSTva~~La-~l 98 (281)
T 2f6r_A 78 LGLTGISGSGKSSVAQRLK-NL 98 (281)
T ss_dssp EEEEECTTSCHHHHHHHHH-HH
T ss_pred EEEECCCCCCHHHHHHHHH-HC
Confidence 8999999999999999999 44
No 374
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.71 E-value=0.018 Score=50.19 Aligned_cols=23 Identities=22% Similarity=0.296 Sum_probs=21.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|+||+|+|||+++..++..+.
T Consensus 33 ~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 33 GALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999998664
No 375
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.70 E-value=0.022 Score=54.27 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=32.1
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
...+++.+.-.+..+. .++|.||+|+||||++++++..+.
T Consensus 246 ~~~~l~~l~~~v~~g~--~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 246 PSGVLAYLWLAIEHKF--SAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CHHHHHHHHHHHHTTC--CEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CHHHHHHHHHHHhCCC--EEEEECCCCCCHHHHHHHHHhhCC
Confidence 4566677777777664 489999999999999999988764
No 376
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.69 E-value=0.022 Score=52.12 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.||+|+|||+++..+++.+.
T Consensus 5 i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 5 IVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEECcchhhHHHHHHHHHHHCC
Confidence 78999999999999999999984
No 377
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.70 E-value=0.0056 Score=50.54 Aligned_cols=32 Identities=16% Similarity=0.173 Sum_probs=23.3
Q ss_pred HHHHhcCCCCeEEEECCCCCCHHHHHHHHHHH
Q psy17903 58 KKCLSGADLPHFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 58 ~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.+.+...+.-.+++.|++|+|||+++..+...
T Consensus 22 ~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 22 ENLYFQGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 33333333335999999999999999888754
No 378
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=94.68 E-value=0.033 Score=54.03 Aligned_cols=43 Identities=19% Similarity=0.319 Sum_probs=28.8
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCcc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 179 (355)
+.+++++||.- .+.+.....+.+.+.+......+|+++++...
T Consensus 495 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 538 (578)
T 4a82_A 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 538 (578)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 34699999984 55666666677766654444556777877654
No 379
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.66 E-value=0.043 Score=46.10 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=22.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.+.|.|++|+||||+++.+++.+..
T Consensus 23 ~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 23 FITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3899999999999999999998854
No 380
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.65 E-value=0.02 Score=44.73 Aligned_cols=23 Identities=22% Similarity=0.361 Sum_probs=20.6
Q ss_pred CeEEEECCCCCCHHHHHHHHHHH
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+.+++.|++|+|||+++..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999875
No 381
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.63 E-value=0.023 Score=48.23 Aligned_cols=24 Identities=17% Similarity=0.318 Sum_probs=21.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+.|.|++|+||||+++.++..++
T Consensus 18 ~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 18 QIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 389999999999999999999873
No 382
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.61 E-value=0.012 Score=47.38 Aligned_cols=38 Identities=18% Similarity=0.188 Sum_probs=26.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 105 (355)
.+.|.|++|+||||+++.++..+....++...+.+++.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAH 41 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCc
Confidence 47899999999999999999987543222334555544
No 383
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.58 E-value=0.071 Score=49.62 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=17.0
Q ss_pred CeEEEECCCCCCHHHHH-HHHH
Q psy17903 67 PHFLFYGPPGTGKTSTM-IAAC 87 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la-~~l~ 87 (355)
.++++.||+|+|||..+ ..+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l 24 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLV 24 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 35899999999999986 4444
No 384
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.57 E-value=0.022 Score=50.60 Aligned_cols=23 Identities=22% Similarity=0.121 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||+|+||||+++.++..+.
T Consensus 93 vgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 93 IGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCchHHHHHHHHHhhcc
Confidence 88999999999999999999875
No 385
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.56 E-value=0.061 Score=47.51 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=22.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
+.|.||.|+||||+++.++..+..
T Consensus 105 i~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 105 VLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh
Confidence 889999999999999999998754
No 386
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=94.55 E-value=0.19 Score=44.45 Aligned_cols=22 Identities=18% Similarity=0.315 Sum_probs=17.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
++++.+|+|+|||..+...+-.
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHh
Confidence 5999999999999877655544
No 387
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.54 E-value=0.022 Score=45.92 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.+|+||.|+|||++++++.-.+..
T Consensus 29 ~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 29 TAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEECTTSSHHHHHHHHHHHTTC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 789999999999999999988753
No 388
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.51 E-value=0.084 Score=44.62 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|.|++|+|||+++.++...-
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 49999999999999999998653
No 389
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.51 E-value=0.14 Score=50.04 Aligned_cols=97 Identities=14% Similarity=0.111 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCCCccchHHHHHHHHHHHHhhccCCCCC
Q psy17903 52 EVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQD 131 (355)
Q Consensus 52 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~ 131 (355)
+..+.+..++.... ...+|+|++|.|||+++-.++..+... +.+.++.......+.+.... ......++
T Consensus 179 dQ~~al~~~~~~~~-~~~vlta~RGRGKSa~lG~~~a~~~~~------~~vtAP~~~a~~~l~~~~~~----~i~~~~Pd 247 (671)
T 2zpa_A 179 EQQQLLKQLMTMPP-GVAAVTAARGRGKSALAGQLISRIAGR------AIVTAPAKASTDVLAQFAGE----KFRFIAPD 247 (671)
T ss_dssp HHHHHHHHHTTCCS-EEEEEEECTTSSHHHHHHHHHHHSSSC------EEEECSSCCSCHHHHHHHGG----GCCBCCHH
T ss_pred HHHHHHHHHHHhhh-CeEEEecCCCCCHHHHHHHHHHHHHhC------cEEECCCHHHHHHHHHHhhC----CeEEeCch
Confidence 44445555544321 248999999999999999999887432 24445555555554443221 11000000
Q ss_pred C--CCCCCcEEEEEeCCCCCCHHHHHHHHH
Q psy17903 132 G--KPCPPFKIVILDEADSMTHAAQAALRR 159 (355)
Q Consensus 132 ~--~~~~~~~vliiDe~d~l~~~~~~~Ll~ 159 (355)
. .......+|||||+-.+.......|+.
T Consensus 248 ~~~~~~~~~dlliVDEAAaIp~pll~~ll~ 277 (671)
T 2zpa_A 248 ALLASDEQADWLVVDEAAAIPAPLLHQLVS 277 (671)
T ss_dssp HHHHSCCCCSEEEEETGGGSCHHHHHHHHT
T ss_pred hhhhCcccCCEEEEEchhcCCHHHHHHHHh
Confidence 0 000123599999999998765555544
No 390
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=94.50 E-value=0.21 Score=51.64 Aligned_cols=53 Identities=15% Similarity=0.025 Sum_probs=30.3
Q ss_pred CccccccCCCCCCcc--cccHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHH
Q psy17903 33 VPWVEKYRPKTIDDV--IEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 33 ~~~~~k~~p~~~~~~--vg~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~ 88 (355)
.+|.+...|.....+ --.+.+.+.+..+.. + .++++.+|+|+|||..+.....
T Consensus 69 ~~~~~~~~p~~~~~~~f~L~~~Q~eai~~l~~-g--~~vLV~apTGSGKTlva~lai~ 123 (1010)
T 2xgj_A 69 TPIAEHKRVNEARTYPFTLDPFQDTAISCIDR-G--ESVLVSAHTSAGKTVVAEYAIA 123 (1010)
T ss_dssp CCGGGCCCSSCSCCCSSCCCHHHHHHHHHHHH-T--CEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCcccChhhHHhCCCCCCHHHHHHHHHHHc-C--CCEEEECCCCCChHHHHHHHHH
Confidence 456555545321111 123344444544443 3 3699999999999998754333
No 391
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.49 E-value=0.29 Score=40.49 Aligned_cols=24 Identities=29% Similarity=0.632 Sum_probs=21.0
Q ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Q psy17903 66 LPHFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 66 ~~~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.+.++|.|++|+|||+++.++...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 345999999999999999998765
No 392
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.48 E-value=0.022 Score=50.09 Aligned_cols=23 Identities=17% Similarity=0.176 Sum_probs=21.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.||+|+|||++++.++..+.
T Consensus 38 ~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 38 IMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998864
No 393
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=94.47 E-value=0.037 Score=55.08 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=17.0
Q ss_pred CeEEEECCCCCCHHHHHHHH
Q psy17903 67 PHFLFYGPPGTGKTSTMIAA 86 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l 86 (355)
.++++.||+|+|||+.+...
T Consensus 47 ~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHH
Confidence 35999999999999998443
No 394
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.45 E-value=0.023 Score=45.54 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.++|.|++|+|||++|..+.+.
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 3999999999999999999885
No 395
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=94.45 E-value=0.11 Score=48.83 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=17.6
Q ss_pred eEEEECCCCCCHHHH-HHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTST-MIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~l-a~~l~~~l 90 (355)
++++.||+|+|||.. +..+...+
T Consensus 23 ~vlv~a~TGsGKT~~~~l~il~~~ 46 (459)
T 2z83_A 23 MTVLDLHPGSGKTRKILPQIIKDA 46 (459)
T ss_dssp EEEECCCTTSCTTTTHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHHH
Confidence 599999999999997 44444443
No 396
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.43 E-value=0.052 Score=44.10 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.+++.|++|+|||+++.++...
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 3999999999999999999874
No 397
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.41 E-value=0.061 Score=48.57 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=21.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+.|.|+||+||||+..++...+.
T Consensus 76 ~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 76 RVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhh
Confidence 399999999999999999998764
No 398
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.39 E-value=0.02 Score=48.32 Aligned_cols=24 Identities=33% Similarity=0.515 Sum_probs=19.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
++|.|++|+||||.++.+++.+..
T Consensus 28 I~~eG~~GsGKsT~~~~l~~~l~~ 51 (227)
T 3v9p_A 28 ITFEGIDGAGKTTHLQWFCDRLQE 51 (227)
T ss_dssp EEEECCC---CHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 899999999999999999998853
No 399
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.38 E-value=0.025 Score=51.60 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.||+|+||||+++.++..+.
T Consensus 139 i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 139 ILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHhhcC
Confidence 99999999999999999999764
No 400
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.38 E-value=0.023 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+++.|.||+||||+++.+++.+.
T Consensus 38 IvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 38 IVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 89999999999999999999874
No 401
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.37 E-value=0.2 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|.||.|+||||+.+.++...
T Consensus 578 i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 578 LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHhhh
Confidence 38999999999999999998754
No 402
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.33 E-value=0.027 Score=46.19 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.|++|+|||++++.++...
T Consensus 8 v~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 8 VVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 8999999999999999998764
No 403
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.31 E-value=0.021 Score=51.88 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 55 SVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 55 ~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.+.-.+..|. .++|.||+|+||||++++++..+.
T Consensus 166 ~~l~~~i~~G~--~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLER--VIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTC--CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC--EEEEECCCCCCHHHHHHHHHhcCC
Confidence 44544555553 489999999999999999998764
No 404
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.29 E-value=0.015 Score=48.52 Aligned_cols=21 Identities=29% Similarity=0.398 Sum_probs=18.4
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+++.|++|+|||+++..+...
T Consensus 18 i~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 18 LVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp EEEEECTTSSHHHHHTTBHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999994443
No 405
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.28 E-value=0.1 Score=50.82 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=29.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCcc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 179 (355)
+.+++++||.- .+.+.....+.+.+.+...+..+|+++++.+.
T Consensus 509 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~ 552 (598)
T 3qf4_B 509 NPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNT 552 (598)
T ss_dssp CCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 34699999985 55666666666666654445567778877654
No 406
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.26 E-value=0.025 Score=46.10 Aligned_cols=23 Identities=22% Similarity=0.437 Sum_probs=20.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.|++|+|||++++.++....
T Consensus 32 v~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 32 VVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEECTTSSHHHHHHHHHHSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 89999999999999999987653
No 407
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.22 E-value=0.022 Score=48.42 Aligned_cols=42 Identities=7% Similarity=0.218 Sum_probs=28.4
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccC--CccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETK--STRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 178 (355)
+.+++++||-- .|.+.....+.+.+.+... ...+|++|++..
T Consensus 163 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~ 207 (235)
T 3tif_A 163 NPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN 207 (235)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH
Confidence 44699999974 5566777777777765422 456777787764
No 408
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=94.20 E-value=0.041 Score=52.83 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=31.2
Q ss_pred cHHHHHHHHHHHh--cCCCCeEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 50 QQEVVSVLKKCLS--GADLPHFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 50 ~~~~~~~l~~~l~--~~~~~~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.+++...+..... ......++|+|++|+||||+++.+++.+..
T Consensus 354 r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 354 RPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 4556666666652 222223899999999999999999998753
No 409
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=94.19 E-value=0.28 Score=51.22 Aligned_cols=22 Identities=27% Similarity=0.176 Sum_probs=17.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+++++||+|+|||..+...+..
T Consensus 201 dvLV~ApTGSGKTlva~l~i~~ 222 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIAQ 222 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHH
Confidence 5999999999999987554443
No 410
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.14 E-value=0.46 Score=43.89 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGD 93 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~ 93 (355)
+.+.|+.|+||||++..++..+...
T Consensus 101 i~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 101 WFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHc
Confidence 8888999999999999999988643
No 411
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.13 E-value=0.028 Score=47.91 Aligned_cols=42 Identities=10% Similarity=0.155 Sum_probs=28.3
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccC--CccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETK--STRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 178 (355)
+.+++++||-- .|.+.....+.+.+.+... ...+|+++++..
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~ 188 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 44699999974 5667777777777765421 455677777654
No 412
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.13 E-value=0.026 Score=47.95 Aligned_cols=23 Identities=13% Similarity=0.086 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.|++|+||||+++.+++.+.
T Consensus 5 i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 5 LSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999974
No 413
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.11 E-value=0.032 Score=49.31 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||.|+||||+++.++..+.
T Consensus 103 i~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 103 IMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999874
No 414
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=94.08 E-value=0.16 Score=48.03 Aligned_cols=40 Identities=20% Similarity=0.009 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
|.+.+..+......+ .+.++.-+.|+|||..+-+++..+.
T Consensus 42 Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~ai~~i~~~~ 81 (500)
T 1z63_A 42 QIKGFSWMRFMNKLG--FGICLADDMGLGKTLQTIAVFSDAK 81 (500)
T ss_dssp HHHHHHHHHHHHHTT--CCEEECCCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC--CCEEEEeCCCCcHHHHHHHHHHHHH
Confidence 444444444433433 2588999999999999888877764
No 415
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=94.07 E-value=0.036 Score=46.76 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+-|.|+||+||||.++.+++.+.
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g 33 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFG 33 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred eeeECCCCCCHHHHHHHHHHHhC
Confidence 88999999999999999999884
No 416
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.06 E-value=0.033 Score=46.00 Aligned_cols=28 Identities=11% Similarity=0.008 Sum_probs=24.1
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcCCcc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFGDMY 95 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~~~~ 95 (355)
-+.|.|+.|+|||++++.+++.++...+
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 3899999999999999999999954433
No 417
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.04 E-value=0.022 Score=46.72 Aligned_cols=22 Identities=14% Similarity=0.205 Sum_probs=4.2
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.++|.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3999999999999999998876
No 418
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.04 E-value=0.29 Score=46.96 Aligned_cols=18 Identities=28% Similarity=0.403 Sum_probs=14.9
Q ss_pred CeEEEECCCCCCHHHHHH
Q psy17903 67 PHFLFYGPPGTGKTSTMI 84 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~ 84 (355)
.++++.+|+|+|||..+.
T Consensus 112 ~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 112 HDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred CeEEEECCCCCCccHHHH
Confidence 359999999999998643
No 419
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.02 E-value=0.023 Score=47.94 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||.|+||||+++.++..+
T Consensus 33 ~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 33 VSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp EEEEECTTSCHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998765
No 420
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.02 E-value=0.18 Score=42.90 Aligned_cols=22 Identities=27% Similarity=0.425 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.++|.|.+|+|||+++.++...
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 3999999999999999998764
No 421
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.99 E-value=0.063 Score=57.22 Aligned_cols=24 Identities=17% Similarity=0.229 Sum_probs=21.4
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.+.|.||.|+||||+++.+.+.+.
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EEEEEecCCCcHHHHHHHhccccc
Confidence 389999999999999999988763
No 422
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.99 E-value=0.068 Score=45.79 Aligned_cols=35 Identities=29% Similarity=0.423 Sum_probs=26.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCccccceeeecC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNA 104 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~ 104 (355)
+++.|.+|+||||++..++..+. ...+..++..+.
T Consensus 17 ~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 17 VVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred EEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 89999999999999999999886 444334444443
No 423
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.97 E-value=0.026 Score=47.98 Aligned_cols=43 Identities=12% Similarity=0.092 Sum_probs=29.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhh---hccCCccEEEEecCCcc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTME---KETKSTRFCLICNYVSC 179 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le---~~~~~~~~Il~~~~~~~ 179 (355)
+.+++++||.- .|.+.....+.+.+. +......+|+++.+...
T Consensus 145 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~ 191 (237)
T 2cbz_A 145 NADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY 191 (237)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH
Confidence 34699999975 566777788888773 22234567777877653
No 424
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.97 E-value=0.038 Score=43.27 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.+|+||.|+|||+++.++.-.+.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 799999999999999999987744
No 425
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.96 E-value=0.027 Score=47.12 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||.|+||||+++.++..+
T Consensus 38 ~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 38 VNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998765
No 426
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.95 E-value=0.062 Score=54.10 Aligned_cols=38 Identities=34% Similarity=0.489 Sum_probs=28.4
Q ss_pred cHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 50 QQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 50 ~~~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++.+...+...+. .+.++|.||||||||+++..+...+
T Consensus 362 n~~Q~~Av~~~l~---~~~~lI~GppGTGKT~~i~~~i~~l 399 (802)
T 2xzl_A 362 NSSQSNAVSHVLQ---RPLSLIQGPPGTGKTVTSATIVYHL 399 (802)
T ss_dssp CHHHHHHHHHHTT---CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc---CCCEEEECCCCCCHHHHHHHHHHHH
Confidence 4666667766654 2358999999999999987776654
No 427
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.93 E-value=0.39 Score=49.00 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=18.3
Q ss_pred EEEECCCCCCHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~ 88 (355)
++|+||.|+||||+++.++-
T Consensus 665 ~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 665 HIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999999843
No 428
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.92 E-value=0.028 Score=45.40 Aligned_cols=21 Identities=24% Similarity=0.491 Sum_probs=19.3
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~ 88 (355)
.++|.|++|+|||++++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 389999999999999999986
No 429
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=93.91 E-value=0.031 Score=45.21 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=19.3
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
++++|++|+|||++|..++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 689999999999999999865
No 430
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.91 E-value=0.035 Score=46.44 Aligned_cols=25 Identities=28% Similarity=0.215 Sum_probs=22.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
.+.|.|++|+||||.++.+++.+..
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 3899999999999999999999854
No 431
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.86 E-value=0.036 Score=43.82 Aligned_cols=22 Identities=23% Similarity=0.413 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.+.|.|++|+|||+++.+++..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999863
No 432
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=93.82 E-value=0.036 Score=48.82 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.|++|+||||++..++..+.
T Consensus 108 i~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 108 IVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999998875
No 433
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.79 E-value=0.037 Score=48.08 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=21.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||+|+||||+++.++....
T Consensus 5 v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 5 IMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhCCCC
Confidence 78999999999999999998763
No 434
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.71 E-value=0.03 Score=48.36 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||.|+||||+++.++..+
T Consensus 35 ~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 35 ISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8899999999999999998765
No 435
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.71 E-value=0.039 Score=43.71 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=19.7
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.+++.|++|+|||+++.++...
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcC
Confidence 3999999999999999998754
No 436
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.70 E-value=0.038 Score=47.40 Aligned_cols=42 Identities=19% Similarity=0.222 Sum_probs=29.0
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKET-KSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 178 (355)
+.+++++||.- .|.+.....+.+.+.+.. ....+|+++++..
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 204 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR 204 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 34699999974 566777777777776543 3456777787654
No 437
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.69 E-value=0.43 Score=48.62 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=19.0
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
++|.||.|+||||+.+.++.-
T Consensus 676 ~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 676 MIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp EEEESCCCHHHHHHHHHHHHH
T ss_pred EEEECCCCCchHHHHHHHHHH
Confidence 899999999999999988643
No 438
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.68 E-value=0.052 Score=52.44 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=21.9
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.|++|+||||+++.+++.+.
T Consensus 399 I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 399 IFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEeecCCCCCHHHHHHHHHHHhc
Confidence 89999999999999999999985
No 439
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.66 E-value=0.056 Score=42.98 Aligned_cols=23 Identities=30% Similarity=0.375 Sum_probs=20.4
Q ss_pred CeEEEECCCCCCHHHHHHHHHHH
Q psy17903 67 PHFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
..+++.|++|+|||+++.++...
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 45999999999999999999764
No 440
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.66 E-value=0.032 Score=48.62 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=30.0
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhcc--CCccEEEEecCCccc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKET--KSTRFCLICNYVSCI 180 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~~l 180 (355)
+.+++++||-- .|.+.....+.+.+.+.. ....+|+++.+...+
T Consensus 161 ~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~ 207 (275)
T 3gfo_A 161 EPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIV 207 (275)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHH
Confidence 44699999964 567777777777776543 245677788776543
No 441
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.66 E-value=0.034 Score=50.31 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||.|+||||+++.++...
T Consensus 33 ~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 33 LFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 8899999999999999999865
No 442
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.63 E-value=0.044 Score=43.18 Aligned_cols=22 Identities=27% Similarity=0.481 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++..+...-
T Consensus 9 i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 9 VVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 9999999999999999998653
No 443
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.63 E-value=0.039 Score=47.85 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=29.8
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKET-KSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 178 (355)
+.+++++||-- .|.+.....+.+++.+.. ....+|+++.+..
T Consensus 182 ~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 182 EPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 44699999975 567777888888877643 2456777777654
No 444
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=93.61 E-value=0.087 Score=52.31 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=16.4
Q ss_pred CeEEEECCCCCCHHHHHHH
Q psy17903 67 PHFLFYGPPGTGKTSTMIA 85 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la~~ 85 (355)
.++++.||+|+|||+.+..
T Consensus 41 ~~~lv~apTGsGKT~~~~l 59 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAEM 59 (702)
T ss_dssp SCEEEECSSHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHH
Confidence 3699999999999999843
No 445
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.60 E-value=0.033 Score=47.97 Aligned_cols=43 Identities=14% Similarity=0.187 Sum_probs=29.2
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCccEEEEecCCcc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKET-KSTRFCLICNYVSC 179 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~ 179 (355)
+.+++++||-- .|.+.....+.+.+.+.. ....+|+++++...
T Consensus 171 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 215 (257)
T 1g6h_A 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDI 215 (257)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCST
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHH
Confidence 44699999974 566777777777776542 24567777877654
No 446
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.59 E-value=0.034 Score=47.63 Aligned_cols=42 Identities=29% Similarity=0.388 Sum_probs=28.4
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 178 (355)
+.+++++||.- .|.+.....+.+.+.+......+|+++.+..
T Consensus 163 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~ 205 (247)
T 2ff7_A 163 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLS 205 (247)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGG
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 44699999975 5566667777777665433556777777654
No 447
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.58 E-value=0.034 Score=47.50 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||.|+||||+++.++..+
T Consensus 31 ~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 31 IAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 8999999999999999998765
No 448
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.58 E-value=0.034 Score=47.37 Aligned_cols=42 Identities=14% Similarity=0.215 Sum_probs=27.8
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKET-KSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 178 (355)
+.+++++||-- .|.+.....+.+.+.+.. ....+|+++++..
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~ 200 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL 200 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 44699999974 566677777777766542 3455667777653
No 449
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.57 E-value=0.043 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.|++|+||||+++.++..+.
T Consensus 372 I~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 372 VFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHHHhhc
Confidence 89999999999999999999985
No 450
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.56 E-value=0.046 Score=43.57 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+++.|++|+|||+++..+...-
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 39999999999999999998754
No 451
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.53 E-value=0.035 Score=46.93 Aligned_cols=42 Identities=10% Similarity=0.078 Sum_probs=28.4
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHH-hhhccCCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRT-MEKETKSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~-le~~~~~~~~Il~~~~~~ 178 (355)
+.+++++||.- .|.+.....+.+. +.+......+|+++++..
T Consensus 148 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~ 191 (229)
T 2pze_A 148 DADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKME 191 (229)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHH
T ss_pred CCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChH
Confidence 45699999974 5667777788775 444333456777777654
No 452
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.52 E-value=0.043 Score=43.18 Aligned_cols=22 Identities=23% Similarity=0.519 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3899999999999999999864
No 453
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.51 E-value=0.035 Score=48.01 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||.|+||||+++.++..+
T Consensus 53 ~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 53 VVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEcCCCCcHHHHHHHHHcCC
Confidence 8899999999999999998765
No 454
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.50 E-value=0.016 Score=50.04 Aligned_cols=24 Identities=13% Similarity=0.014 Sum_probs=21.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
.++|.|++|+||||+++.+++.+.
T Consensus 26 ~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 26 KISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp EEEEECSTTSSHHHHHTTTGGGCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 389999999999999999998873
No 455
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.50 E-value=0.047 Score=49.40 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||.|+||||+++.++..+.
T Consensus 160 i~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 160 IMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEcCCCChHHHHHHHHHhhcc
Confidence 89999999999999999999874
No 456
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=93.48 E-value=0.36 Score=45.98 Aligned_cols=36 Identities=25% Similarity=0.481 Sum_probs=24.0
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 52 EVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 52 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.+...+..++.+ .++++.+|+|+|||..+...+...
T Consensus 11 ~Q~~~i~~~~~~---~~~l~~~~tGsGKT~~~~~~~~~~ 46 (556)
T 4a2p_A 11 YQIELAQPAING---KNALICAPTGSGKTFVSILICEHH 46 (556)
T ss_dssp HHHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CCEEEEcCCCChHHHHHHHHHHHH
Confidence 344444444443 358999999999998876655443
No 457
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.46 E-value=0.038 Score=50.19 Aligned_cols=23 Identities=13% Similarity=0.141 Sum_probs=21.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.||+|+||||+++.++..+.
T Consensus 173 ~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 173 VAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp EEEECCTTSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999864
No 458
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=93.45 E-value=0.056 Score=48.15 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=22.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
+.|.|++|+||||++..++..+..
T Consensus 108 I~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 108 FMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 889999999999999999998754
No 459
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.43 E-value=0.043 Score=49.58 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||.|+||||+++.++..+
T Consensus 44 ~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 44 VGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8899999999999999999765
No 460
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.40 E-value=0.048 Score=42.93 Aligned_cols=21 Identities=19% Similarity=0.298 Sum_probs=18.9
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~ 88 (355)
.+++.|++|+|||+++..+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999999863
No 461
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.40 E-value=0.08 Score=52.75 Aligned_cols=24 Identities=33% Similarity=0.438 Sum_probs=18.4
Q ss_pred CeEEEECCCCCCHHHHH-HHHHHHh
Q psy17903 67 PHFLFYGPPGTGKTSTM-IAACHQL 90 (355)
Q Consensus 67 ~~~ll~Gp~G~GKt~la-~~l~~~l 90 (355)
.++++.||+|+|||..+ ..+.+.+
T Consensus 40 ~~~lv~apTGsGKT~~~~l~il~~~ 64 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAEIAMVHRI 64 (720)
T ss_dssp CEEEEECCGGGCHHHHHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHH
Confidence 46999999999999988 3444443
No 462
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=93.39 E-value=0.44 Score=45.98 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHH
Q psy17903 52 EVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMI 84 (355)
Q Consensus 52 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~ 84 (355)
.+.+.+..++.. ....+++.+|+|+|||..+.
T Consensus 47 ~Q~~~i~~il~~-~~~dvlv~apTGsGKTl~~~ 78 (579)
T 3sqw_A 47 VQQKTIKPILSS-EDHDVIARAKTGTGKTFAFL 78 (579)
T ss_dssp HHHHHHHHHHCS-SSEEEEEECCTTSCHHHHHH
T ss_pred HHHHHHHHHHcc-CCCeEEEEcCCCcHHHHHHH
Confidence 344444444432 22359999999999998643
No 463
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.38 E-value=0.038 Score=48.04 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=29.4
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccC--CccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETK--STRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 178 (355)
+.+++++||.- .|.......+.+.+.+... ...+|+++.+..
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~ 218 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS 218 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH
Confidence 44699999974 5667777788888776532 456777777654
No 464
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.38 E-value=0.038 Score=47.36 Aligned_cols=22 Identities=23% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||.|+||||+++.++..+
T Consensus 29 ~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 29 LHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8899999999999999998765
No 465
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.36 E-value=0.038 Score=47.55 Aligned_cols=42 Identities=12% Similarity=0.248 Sum_probs=28.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKET-KSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~ 178 (355)
+.+++++||-- .|.+.....+.+++.+.. ....+|+++.+..
T Consensus 164 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~ 207 (256)
T 1vpl_A 164 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML 207 (256)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH
Confidence 44699999975 666777777777766542 2455677777653
No 466
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.36 E-value=0.038 Score=47.66 Aligned_cols=43 Identities=28% Similarity=0.392 Sum_probs=29.2
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCcc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 179 (355)
+.+++++||.- .|.+.....+.+.+.+......+|+++++...
T Consensus 173 ~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~ 216 (260)
T 2ghi_A 173 DPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLST 216 (260)
T ss_dssp CCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHH
Confidence 34699999974 56666677777777654444567777877553
No 467
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.36 E-value=0.038 Score=47.88 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=28.1
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhcc--CCccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKET--KSTRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~--~~~~~Il~~~~~~ 178 (355)
+.+++++||-- .|.+..+..+.+.+.+.. ....+|+++++..
T Consensus 165 ~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~ 209 (266)
T 4g1u_C 165 TPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN 209 (266)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH
Confidence 56799999974 566677777777776542 2345677777654
No 468
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.34 E-value=0.69 Score=40.58 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+.|.|.||+||||++.++...
T Consensus 10 V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 10 VAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEECSTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999865
No 469
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.33 E-value=0.045 Score=49.53 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||.|+||||+++.++...
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 32 VALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEcCCCchHHHHHHHHHCCC
Confidence 7899999999999999999765
No 470
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=93.32 E-value=0.12 Score=53.36 Aligned_cols=34 Identities=12% Similarity=-0.039 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHH
Q psy17903 52 EVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 52 ~~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~ 88 (355)
.+.+.+..++. + .++++.||+|+|||..+.....
T Consensus 43 ~Q~~aI~~il~-g--~~vlv~apTGsGKTlv~~~~i~ 76 (997)
T 4a4z_A 43 FQKEAVYHLEQ-G--DSVFVAAHTSAGKTVVAEYAIA 76 (997)
T ss_dssp HHHHHHHHHHT-T--CEEEEECCTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHc-C--CCEEEEECCCCcHHHHHHHHHH
Confidence 33444444443 3 3699999999999986544433
No 471
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.31 E-value=0.053 Score=43.92 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.9
Q ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Q psy17903 66 LPHFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 66 ~~~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
...+++.|++|+|||+++..+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345999999999999999999754
No 472
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.29 E-value=0.051 Score=42.79 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.8
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3899999999999999999864
No 473
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.29 E-value=0.055 Score=42.64 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.9
Q ss_pred eEEEECCCCCCHHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~ 89 (355)
.+++.|++|+|||+++..+...
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3999999999999999999764
No 474
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.29 E-value=0.039 Score=48.13 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||.|+||||+++.++..+
T Consensus 50 ~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 50 WILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp EEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8899999999999999998765
No 475
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.29 E-value=0.046 Score=49.54 Aligned_cols=22 Identities=23% Similarity=0.542 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||.|+||||+++.++..+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 32 MALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCchHHHHHHHHhcCC
Confidence 7899999999999999999765
No 476
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.28 E-value=0.051 Score=43.75 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
++|.|++|+|||+++..++..
T Consensus 10 i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 10 IALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEECSTTSSHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 999999999999999999864
No 477
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.26 E-value=0.06 Score=44.62 Aligned_cols=23 Identities=39% Similarity=0.732 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.|+.|+||||.++.+++.+.
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHH
Confidence 78999999999999999999985
No 478
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=93.22 E-value=0.053 Score=52.69 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=21.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
++|.|.+|+||||+++.+++.+.
T Consensus 55 IvLtGlsGSGKSTlAr~La~~L~ 77 (630)
T 1x6v_B 55 VWLTGLSGAGKTTVSMALEEYLV 77 (630)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999983
No 479
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=93.20 E-value=0.41 Score=45.48 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 53 VVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 53 ~~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+...+..++.+ .++++.+|+|+|||..+...+...
T Consensus 9 Q~~~i~~~~~~---~~~l~~~~tGsGKT~~~~~~~~~~ 43 (555)
T 3tbk_A 9 QLELALPAKKG---KNTIICAPTGCGKTFVSLLICEHH 43 (555)
T ss_dssp HHHHHHHHHTT---CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC---CCEEEEeCCCChHHHHHHHHHHHH
Confidence 33444444433 359999999999998876655443
No 480
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.19 E-value=0.057 Score=43.73 Aligned_cols=23 Identities=22% Similarity=0.362 Sum_probs=20.5
Q ss_pred eEEEECCCCCCHHHHHHHHHHHh
Q psy17903 68 HFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
.++|.|++|+|||+++..+...-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 39999999999999999998753
No 481
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.16 E-value=0.053 Score=43.08 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=19.6
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+++.|++|+|||+++..+...
T Consensus 17 i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 17 LVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 999999999999999999864
No 482
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.15 E-value=0.043 Score=47.52 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=29.4
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhcc-CCccEEEEecCCcc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKET-KSTRFCLICNYVSC 179 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~-~~~~~Il~~~~~~~ 179 (355)
+.+++++||-- .|.+.....+.+.+.+.. ....+|+++++...
T Consensus 156 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~ 200 (266)
T 2yz2_A 156 EPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIET 200 (266)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTT
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 44699999975 566777777777776542 24567777876553
No 483
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.15 E-value=0.05 Score=49.55 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.4
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+.|.||.|+||||+++.++..+
T Consensus 32 ~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 32 MILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEECCCCcHHHHHHHHHHcCC
Confidence 8899999999999999999765
No 484
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.13 E-value=0.057 Score=50.81 Aligned_cols=23 Identities=35% Similarity=0.444 Sum_probs=21.5
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.|+.|+||||+++.++..+.
T Consensus 296 I~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 296 ILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCcccHHHHHHHHHHHhh
Confidence 88999999999999999998874
No 485
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.12 E-value=0.037 Score=51.17 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=28.5
Q ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHh
Q psy17903 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 54 ~~~l~~~l~~~~~~~~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++.+.-.+..|..+++.|.||+|+|||||++.++...
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 5555555667765558999999999999999998753
No 486
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.09 E-value=0.051 Score=43.19 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=19.5
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
+++.|++|+|||+++..+...
T Consensus 9 i~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGG
T ss_pred EEEECcCCCCHHHHHHHHHhC
Confidence 999999999999999999864
No 487
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.09 E-value=0.054 Score=43.10 Aligned_cols=22 Identities=23% Similarity=0.381 Sum_probs=20.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++.++...-
T Consensus 12 i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 12 LVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 9999999999999999998763
No 488
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.09 E-value=0.044 Score=47.10 Aligned_cols=42 Identities=14% Similarity=0.213 Sum_probs=28.9
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccC--CccEEEEecCCc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETK--STRFCLICNYVS 178 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~--~~~~Il~~~~~~ 178 (355)
+.+++++||.- .|.+.....+.+.+.+... ...+|+++++..
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~ 190 (253)
T 2nq2_C 146 ECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190 (253)
T ss_dssp TCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 44699999975 5677777777777765432 455677787654
No 489
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.08 E-value=0.068 Score=43.98 Aligned_cols=26 Identities=23% Similarity=0.278 Sum_probs=22.6
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcCCc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFGDM 94 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~~~ 94 (355)
+.|.|+.|+||||.++.+++.+....
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 57899999999999999999986543
No 490
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.05 E-value=0.072 Score=47.83 Aligned_cols=23 Identities=35% Similarity=0.393 Sum_probs=21.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHhc
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLF 91 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~ 91 (355)
+.|.|++|+||||+++.++..+.
T Consensus 58 v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 58 VGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhhh
Confidence 89999999999999999998764
No 491
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=93.04 E-value=0.061 Score=43.43 Aligned_cols=22 Identities=14% Similarity=0.070 Sum_probs=20.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
++|.|++|+|||+++..+...-
T Consensus 23 i~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 23 VGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEECCTTSCHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 9999999999999999888754
No 492
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.04 E-value=0.22 Score=43.73 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.7
Q ss_pred EEEECCCCCCHHHHHHHHHHHhcC
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQLFG 92 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l~~ 92 (355)
+.+.|++|+||||++..++..+..
T Consensus 101 i~i~G~~G~GKTT~~~~la~~~~~ 124 (297)
T 1j8m_F 101 IMLVGVQGTGKTTTAGKLAYFYKK 124 (297)
T ss_dssp EEEECSSCSSTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 888999999999999999988753
No 493
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=93.02 E-value=0.38 Score=32.02 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=48.0
Q ss_pred HHHHHHHHcCC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhCCCCCCHHHHHHHhC
Q psy17903 204 RLQYICEQESV-MCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVTG 261 (355)
Q Consensus 204 ~l~~~~~~~~~-~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~~~It~~~v~~~~~ 261 (355)
.++.+++..|+ .+++++...|++...--++++.+..-+....++...++.+||..++.
T Consensus 11 ~v~~iaes~Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 11 SMKVIAESIGVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp HHHHHHHHTTCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 45666777888 79999999999988878888888887777777888999999998764
No 494
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.99 E-value=0.057 Score=43.31 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++..+...-
T Consensus 13 i~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 13 FLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 9999999999999999998654
No 495
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=92.98 E-value=0.3 Score=45.64 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=15.3
Q ss_pred eEEEECCCCCCHHHH-HHHHH
Q psy17903 68 HFLFYGPPGTGKTST-MIAAC 87 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~l-a~~l~ 87 (355)
.+++.||+|+|||.. +..+.
T Consensus 21 ~~lv~a~TGsGKT~~~~~~~l 41 (451)
T 2jlq_A 21 LTIMDLHPGAGKTKRILPSIV 41 (451)
T ss_dssp EEEECCCTTSSCCTTHHHHHH
T ss_pred eEEEECCCCCCHhhHHHHHHH
Confidence 369999999999983 44443
No 496
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.95 E-value=0.053 Score=43.38 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=18.8
Q ss_pred eEEEECCCCCCHHHHHHHHHH
Q psy17903 68 HFLFYGPPGTGKTSTMIAACH 88 (355)
Q Consensus 68 ~~ll~Gp~G~GKt~la~~l~~ 88 (355)
.+++.|++|+|||+++..+..
T Consensus 20 ~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 499999999999999988763
No 497
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.93 E-value=0.048 Score=47.10 Aligned_cols=41 Identities=22% Similarity=0.187 Sum_probs=30.0
Q ss_pred CcEEEEEeCCC-CCCHHHHHHHHHHhhhccCCccEEEEecCCcc
Q psy17903 137 PFKIVILDEAD-SMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179 (355)
Q Consensus 137 ~~~vliiDe~d-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 179 (355)
+.+++++||-- .|.+.....+.+.+.+... .+|+++++...
T Consensus 146 ~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~ 187 (263)
T 2pjz_A 146 QPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDM 187 (263)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGG
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHH
Confidence 45699999974 5677788888888877655 56667776543
No 498
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.92 E-value=0.056 Score=43.10 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=19.7
Q ss_pred EEEECCCCCCHHHHHHHHHHH
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQ 89 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~ 89 (355)
++|.|++|+|||+++.+++..
T Consensus 7 i~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 7 VVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999865
No 499
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.91 E-value=0.11 Score=47.60 Aligned_cols=38 Identities=16% Similarity=0.294 Sum_probs=28.2
Q ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcCCccccceeeecCC
Q psy17903 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105 (355)
Q Consensus 66 ~~~~ll~Gp~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~ 105 (355)
.+|+++.||+|+|||++++.++..+... ...++.++..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~--~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQ--GSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 4579999999999999999999877543 2234445543
No 500
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.90 E-value=0.066 Score=43.28 Aligned_cols=22 Identities=18% Similarity=0.338 Sum_probs=20.1
Q ss_pred EEEECCCCCCHHHHHHHHHHHh
Q psy17903 69 FLFYGPPGTGKTSTMIAACHQL 90 (355)
Q Consensus 69 ~ll~Gp~G~GKt~la~~l~~~l 90 (355)
+++.|++|+|||+++..+...-
T Consensus 24 i~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 24 LAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCcHHHHHHHHHhCC
Confidence 9999999999999999998754
Done!