RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17903
(355 letters)
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 165 bits (418), Expect = 4e-50
Identities = 107/227 (47%), Positives = 145/227 (63%), Gaps = 9/227 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
PWVEKYRP+ +DD++ Q+ +V LK + +PH LF GPPG GKT+ +A +LFG+
Sbjct: 13 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGE 72
Query: 94 MYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
+R LELNASD+RGI VIR+KVK FA+ G FKI+ LDEAD++T A
Sbjct: 73 NWRHNFLELNASDERGINVIREKVKEFARTKPIGGAS-------FKIIFLDEADALTQDA 125
Query: 154 QAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQES 213
Q ALRRTME + + RF L CNY S II+P+ SRC+ FRF+PL + + RL+YI E E
Sbjct: 126 QQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEG 185
Query: 214 VMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDVLEVT 260
+ + L+ ++ + GDMRRAI LQ+ A L + I +E+V V
Sbjct: 186 LELTEEGLQAILYIAEGDMRRAINILQAAAAL--DKKITDENVFMVA 230
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 164 bits (415), Expect = 1e-49
Identities = 134/237 (56%), Positives = 171/237 (72%), Gaps = 8/237 (3%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG- 92
PWVEKYRPK +D+V Q V+VLKK L A+LPH LFYGPPGTGKTST++A +L+G
Sbjct: 1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGP 60
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASG---FNQDGKPCPPFKIVILDEADSM 149
D+ + RILELNASD+RGI ++R+KVK FA+ T S + + PCPP+KI+ILDEADSM
Sbjct: 61 DLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSM 120
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
T AQ+ALRRTME + TRFCLICNYV+ II PL S+CSKFRFK L + + RL++I
Sbjct: 121 TADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFIS 180
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCAR----LKGGEGIVNEDVLEVTGV 262
EQE+V CD LE +++ S GD+RR IT LQS ++ L G+ I + V E+ GV
Sbjct: 181 EQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAGV 237
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 162 bits (412), Expect = 5e-49
Identities = 55/245 (22%), Positives = 103/245 (42%), Gaps = 30/245 (12%)
Query: 37 EKYRPKTIDDVIEQQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTSTMIAACHQLFGDMY 95
K+RP+T DV+ Q+ V++ L LS + H +LF G G GKTS L +
Sbjct: 4 RKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETG 63
Query: 96 RER-------------------ILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCP 136
++E++A+ ++ RD + A G
Sbjct: 64 ITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARG--------- 114
Query: 137 PFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPL 196
FK+ ++DE ++ + AL +T+E+ + +F L + + SRC +F K L
Sbjct: 115 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKAL 174
Query: 197 AENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVNEDV 256
+ +L++I +E + + +AL+ L + G +R A++ G+ + + V
Sbjct: 175 DVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQ-VSTQAV 233
Query: 257 LEVTG 261
+ G
Sbjct: 234 SAMLG 238
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 159 bits (403), Expect = 5e-48
Identities = 98/231 (42%), Positives = 140/231 (60%), Gaps = 10/231 (4%)
Query: 32 PVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF 91
+PWVEKYRP+ + D++ +E + L++ ++PH + G PG GKT+++ H+L
Sbjct: 2 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 61
Query: 92 GDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTH 151
G Y + +LELNASDDRGI V+R+++K FA + P KIVILDEADSMT
Sbjct: 62 GRSYADGVLELNASDDRGIDVVRNQIKHFA------QKKLHLPPGKHKIVILDEADSMTA 115
Query: 152 AAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQ 211
AQ ALRRTME + STRF CN + II+PL S+C+ R+ L++ +L RL I +
Sbjct: 116 GAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL 175
Query: 212 ESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEGIVN-EDVLEVTG 261
E V LE ++ T+ GDMR+AI LQS G G+VN ++V ++
Sbjct: 176 EDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA---GHGLVNADNVFKIVD 223
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 154 bits (388), Expect = 9e-46
Identities = 101/232 (43%), Positives = 147/232 (63%), Gaps = 10/232 (4%)
Query: 33 VPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFG 92
+PWVEKYRP+T+D+V Q EV++ ++K + LPH LFYGPPGTGKTST++A +++G
Sbjct: 2 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 61
Query: 93 DMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHA 152
Y +LELNASDDRGI V+R+++K F + FK++ILDEAD+MT+A
Sbjct: 62 KNYSNMVLELNASDDRGIDVVRNQIKDF-------ASTRQIFSKGFKLIILDEADAMTNA 114
Query: 153 AQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQE 212
AQ ALRR +E+ TK+TRFC++ NY + L S+C++FRF+PL + + R+ + E
Sbjct: 115 AQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHE 174
Query: 213 SVMCDFKALETLVETSGGDMRRAITCLQSCARL---KGGEGIVNEDVLEVTG 261
+ A + L+E S GDMRR + LQSC + I ++ + E G
Sbjct: 175 KLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCG 226
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 121 bits (302), Expect = 6e-33
Identities = 67/250 (26%), Positives = 114/250 (45%), Gaps = 31/250 (12%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCL-SGADLPHFLFYGPPGTGKTSTMIAACHQLFGD 93
WV+KYRPK+++ + +E+ + LK DLPH L YGP GTGK + +A +FG
Sbjct: 1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 60
Query: 94 MYRER---------------------------ILELNASDDRGIQVIRDKVKTFAQQTAS 126
I + ++ I + + +
Sbjct: 61 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 120
Query: 127 GFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTS 186
+ +K VI++EA+S+T AQAALRRTMEK +K+ R ++C+ +S II P+ S
Sbjct: 121 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 180
Query: 187 RCSKFRFKPLAENTMLTRLQYICEQESVMCDFK-ALETLVETSGGDMRRAITCLQSCARL 245
+C R +++ + T L + E + + K L+ + + S G++R ++ L+S A
Sbjct: 181 QCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA-- 238
Query: 246 KGGEGIVNED 255
E +
Sbjct: 239 LNNELALKSS 248
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 118 bits (295), Expect = 6e-32
Identities = 52/254 (20%), Positives = 102/254 (40%), Gaps = 31/254 (12%)
Query: 35 WVEKYRPKTIDDVIEQQEVVSVLKKCLSGAD-----------------LPHFLFYGPPGT 77
W KY P + V + V LK L+ + + YGPPG
Sbjct: 4 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGI 63
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTAS-GFNQDGKPCP 136
GKT+ +L D+ + NASD R ++ VK + G+ + +
Sbjct: 64 GKTTAAHLVAQELGYDILEQ-----NASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQ 118
Query: 137 P----FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS--CIIQPLTSRCSK 190
++I+DE D M+ + + + + K++ ++ ++P C
Sbjct: 119 NLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLD 178
Query: 191 FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSCARLKGGEG 250
+F+ N++ +RL I +E D ++ L++T+ GD+R+ I L + + +
Sbjct: 179 IQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTIST--TTKT 236
Query: 251 IVNEDVLEVTGVIP 264
I +E++ E++
Sbjct: 237 INHENINEISKAWE 250
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 108 bits (270), Expect = 3e-28
Identities = 51/251 (20%), Positives = 78/251 (31%), Gaps = 46/251 (18%)
Query: 40 RPKTIDDVIEQQEVVSVLKKCLS-----GADLPHFLFYGPPGTGKTSTMIAACHQLFGDM 94
RPKT+D+ I Q+ + L+ L L H L +GPPG GKT+ H+L
Sbjct: 4 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELG--- 60
Query: 95 YRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQ 154
+ L + I+ D A G I+ +DE ++ A+
Sbjct: 61 -----VNLRVTSGPAIEKPGDLAAILANSLEEG-----------DILFIDEIHRLSRQAE 104
Query: 155 AALRRTMEK----------------ETKSTRFCLICNYVSCIIQPLTSR---CSKFRFKP 195
L ME + RF LI + +
Sbjct: 105 EHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEY 164
Query: 196 LAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMRRAITCLQSC---ARLKGGEGIV 252
+ + V +A + S G MR A + A++ G E I
Sbjct: 165 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVIT 224
Query: 253 NEDVLEVTGVI 263
E LE +
Sbjct: 225 RERALEALAAL 235
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 103 bits (258), Expect = 6e-27
Identities = 31/202 (15%), Positives = 69/202 (34%), Gaps = 19/202 (9%)
Query: 54 VSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRER-ILELNA-SDDRGIQ 111
+ LK+ + ++ L G + + + + +LE++ ++ GI
Sbjct: 3 LETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGID 62
Query: 112 VIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFC 171
IR +K F + + K VI+ + + MT A A + +E+ +
Sbjct: 63 DIRT-IKDFLNYSPELYT--------RKYVIVHDCERMTQQAANAFLKALEEPPEYAVIV 113
Query: 172 LICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYI-------CEQESVMCDFKALETL 224
L ++ + SR + E L + + + +A +
Sbjct: 114 LNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLG 173
Query: 225 VETSGGDMRRAITCLQSCARLK 246
E G + ++ L++ LK
Sbjct: 174 AEKLSG-LMESLKVLETEKLLK 194
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 103 bits (258), Expect = 1e-26
Identities = 39/237 (16%), Positives = 77/237 (32%), Gaps = 13/237 (5%)
Query: 37 EKYRPKTIDDVIEQQEVVSVLKKCL-----SGADLPHFLFYGPPGTGKTSTMIAACHQLF 91
+ RPK++D+ I Q+ V L L G L H L GPPG GKT+ +L
Sbjct: 1 QFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQ 60
Query: 92 GDMY-RERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
+++ + + D I ++ N+ + + + + D M
Sbjct: 61 TNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEE-LLYSAIEDFQIDIMI 119
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYV-SCIIQPLTSRCSKFRFKPLAENTMLTRLQYIC 209
+A +++ + + + + ++
Sbjct: 120 GKGPSA--KSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAA 177
Query: 210 EQESVMCDFKALETLVETSGGDMRRAITCLQSCARL---KGGEGIVNEDVLEVTGVI 263
V + A E + + S G R AI + + + I + VL+ V+
Sbjct: 178 SLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 234
>d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 91
Score = 76.4 bits (188), Expect = 3e-18
Identities = 19/90 (21%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 263 IPNPWIEKLLKV---DSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALI 319
+P+ + ++++ F ++KY+ + +SA + +Q H+ ++ + K I
Sbjct: 1 VPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYITNDNFDTNFKNQI 60
Query: 320 LEKLAECNARLQDGASEYIQILDLGSIVIK 349
L ++RL +G +E+IQ+L+L + +
Sbjct: 61 SWLLFTTDSRLNNGTNEHIQLLNLLVKISQ 90
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 75.9 bits (185), Expect = 8e-17
Identities = 36/205 (17%), Positives = 56/205 (27%), Gaps = 19/205 (9%)
Query: 50 QQEVVSVLKKCLSGADLPH-FLFYGPPGTGKTST--MIAACHQLFGDMYRERILELNASD 106
+ L H L PG G + ++ +
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66
Query: 107 DRGIQVIRDKVKTFAQQTASGFNQDGKP-----------CPPFKIVILDEADSMTHAAQA 155
D ++ + D K+V + +A +T AA
Sbjct: 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAAN 126
Query: 156 ALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVM 215
AL +T+E+ T F L ++ L SRC P E +T L V
Sbjct: 127 ALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLS-----REVT 181
Query: 216 CDFKALETLVETSGGDMRRAITCLQ 240
AL + S G A+ Q
Sbjct: 182 MSQDALLAALRLSAGSPGAALALFQ 206
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 77.4 bits (190), Expect = 2e-16
Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 23/194 (11%)
Query: 67 PHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKT----FAQ 122
++LF GP +GKT+ A G L +N DR + + F
Sbjct: 155 RYWLFKGPIDSGKTTLAAALLELCGGK-----ALNVNLPLDRLNFELGVAIDQFLVVFED 209
Query: 123 QTASGFNQDGKPCPPFKIVILDEADSMT------HAAQAALRRTMEKETKSTRFCLICN- 175
+G P ++ D++ + ++ + N
Sbjct: 210 VKGTGGESRDLPS----GQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNE 265
Query: 176 YVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLV-ETSGGDMRR 234
Y L R +++ E+ + L L+ + +
Sbjct: 266 YSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQ 325
Query: 235 AIT--CLQSCARLK 246
+I ++ RL
Sbjct: 326 SIQSRIVEWKERLD 339
>d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 95
Score = 67.5 bits (165), Expect = 7e-15
Identities = 12/87 (13%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 268 IEKLLKV---DSFQVLEKYIEDLILE-AYSATQLFDQFHDIVMSASSLSDKQKALILEKL 323
++ +LK D + + + + L + I+ +++ + +L KL
Sbjct: 6 LKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQNEETRVHLLTKL 65
Query: 324 AECNARLQDGASEYIQILDLGSIVIKA 350
A+ + G ++ IQ + + +
Sbjct: 66 ADIEYSISKGGNDQIQGSAVIGAIKAS 92
>d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 63.7 bits (155), Expect = 1e-13
Identities = 12/86 (13%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 268 IEKLLKVDSFQ-VLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAEC 326
++K+L + + ++ DL + YS+ + + + + + + + +++++
Sbjct: 6 VKKMLLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLEMIKEIGLT 65
Query: 327 NARLQDGASEYIQILDLGSIVIKANK 352
+ R+ +G Y+Q+ + + + K N
Sbjct: 66 HMRILEGVGTYLQLASMLAKIHKLNN 91
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 67.1 bits (162), Expect = 3e-13
Identities = 40/261 (15%), Positives = 76/261 (29%), Gaps = 36/261 (13%)
Query: 34 PWVEKYRPKTIDDVIEQ-QEVVSVLKKCL--SGADLPHFLFYGPPGTGKTSTMIAACHQL 90
+ Y PK + +Q Q++ +L L G P G PGTGKT T+
Sbjct: 8 VFSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELY 67
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASG----------FNQDGKPCPPFKI 140
+ +I + ++ + + +
Sbjct: 68 KDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMF 127
Query: 141 VILDEADSMTHAAQAALRRTMEKETKSTRFCLIC-------NYVSCIIQPLTSRCSK--- 190
++LD+A ++ + R ++ K F + ++ + K
Sbjct: 128 LVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVI 187
Query: 191 -FRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSG---------GDMRRAITCLQ 240
F + + + L+ + + +G GD R AI L
Sbjct: 188 RFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILY 247
Query: 241 SCARL---KGGEGIVNEDVLE 258
A G + I EDV +
Sbjct: 248 RSAYAAQQNGRKHIAPEDVRK 268
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 61.7 bits (148), Expect = 2e-11
Identities = 35/273 (12%), Positives = 71/273 (26%), Gaps = 50/273 (18%)
Query: 37 EKYRPKTIDDVIEQ-QEVVSVLKKCLSGADLP-----HFLFYGPPGTGKTSTMIAACHQL 90
E Y P + + + + + L + G G GKT+ ++
Sbjct: 11 ENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 70
Query: 91 FGDMYRERILELNASDD-RGIQVIRDKVKTFAQQTASGFNQDGKP--------------- 134
+E + A + + + +QT G P
Sbjct: 71 SEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE 130
Query: 135 -----CPPFKIVILDEADSMTHAAQAALRRTMEKETK------------STRFCLICNYV 177
+ + + + L R E+ ++ +
Sbjct: 131 NHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMR 190
Query: 178 SCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDF--KALETLVETSG------ 229
I Q + K + T L+ E + + LE + + G
Sbjct: 191 EKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGD 250
Query: 230 GDMRRAITCLQSCARL---KGGEGIVNEDVLEV 259
G RRAI L+ + G + + + V +
Sbjct: 251 GSARRAIVALKMACEMAEAMGRDSLSEDLVRKA 283
>d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 95
Score = 57.5 bits (139), Expect = 2e-11
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 268 IEKLLKVDSFQVLEKYIEDLILEAYSATQLFDQFHDIVMSASSLSDKQKALILEKLAECN 327
+ LK + + EK E L+ + S + Q H V + + + +K L+ +K+ E N
Sbjct: 11 MLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFN-LPIEEPKKVLLADKIGEYN 69
Query: 328 ARLQDGASEYIQILDL 343
RL +GA+E IQ+ L
Sbjct: 70 FRLVEGANEIIQLEAL 85
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 43.4 bits (101), Expect = 2e-05
Identities = 14/96 (14%), Positives = 34/96 (35%), Gaps = 1/96 (1%)
Query: 46 DVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNAS 105
++ Q+++ L + L +G GTGK+ T + A L ++ +++
Sbjct: 8 AIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKS-TAVRALAALLPEIEAVEGCPVSSP 66
Query: 106 DDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141
+ I + T + + ++V
Sbjct: 67 NVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVV 102
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 41.4 bits (96), Expect = 1e-04
Identities = 14/98 (14%), Positives = 23/98 (23%), Gaps = 5/98 (5%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF 128
L GP G GKT + + G +V
Sbjct: 52 ILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA----- 106
Query: 129 NQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETK 166
IV +DE D + + + + +
Sbjct: 107 GGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQ 144
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 38.4 bits (88), Expect = 7e-04
Identities = 11/53 (20%), Positives = 20/53 (37%)
Query: 44 IDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYR 96
+ V++ E++ K L L GPP +GKT+ + +
Sbjct: 18 VTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIK 70
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 37.3 bits (85), Expect = 0.002
Identities = 19/140 (13%), Positives = 36/140 (25%), Gaps = 9/140 (6%)
Query: 42 KTIDDVIEQQEVVSVLKKCLSGADLPH----FLFYGPPGTGKTSTMIAACHQLFGDMYRE 97
D + + L++ + G FL G PG+GKTS A + G++
Sbjct: 4 VNFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVI 63
Query: 98 RILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAAL 157
++++ K + I+ +
Sbjct: 64 DNDTFKQQHPNFDELVKLYEKDVVKHV-----TPYSNRMTEAIISRLSDQGYNLVIEGTG 118
Query: 158 RRTMEKETKSTRFCLICNYV 177
R T +T
Sbjct: 119 RTTDVPIQTATMLQAKGYET 138
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 35.6 bits (82), Expect = 0.005
Identities = 30/114 (26%), Positives = 44/114 (38%), Gaps = 22/114 (19%)
Query: 44 IDDVIEQ-QEVVSVLKK----CLSGADLP-HFLFYGPPGTGKTSTMIAACHQLFGDMYRE 97
++ E+ +E+V LK GA +P L GPPG GKT A + R
Sbjct: 14 AEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA-----RV 68
Query: 98 RILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADSM 149
+ + SD + V A + F PC IV +DE D++
Sbjct: 69 PFITASGSD-----FVEMFVGVGAARVRDLFETAKRHAPC----IVFIDEIDAV 113
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 36.2 bits (83), Expect = 0.005
Identities = 12/98 (12%), Positives = 25/98 (25%), Gaps = 12/98 (12%)
Query: 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
+ G +GKT + A L G + R + + F
Sbjct: 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATV--------RFGEPLSGYNTDFNVFVDDI 176
Query: 128 FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKET 165
+ ++++D ++ AA
Sbjct: 177 ARAMLQHR----VIVIDSLKNVIGAAGGNTTSGGISRG 210
>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain
{Adeno-associated virus 2, AAV2 [TaxId: 10804]}
Length = 267
Score = 35.3 bits (81), Expect = 0.008
Identities = 9/48 (18%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 48 IEQQEVVSVLKKCLSGADLPH--FLFYGPPGTGKTSTMIAACHQLFGD 93
+ Q SV + +GP TGK + + A
Sbjct: 84 YDPQYAASVFLGWATKKFGKRNTIWLFGPATTGK-TNIAEAIAHTVPF 130
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 34.8 bits (80), Expect = 0.010
Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 28/121 (23%)
Query: 43 TIDDVIEQQEVVSVLKKCLS-----------GADLPH-FLFYGPPGTGKTSTMIAACHQL 90
T DV E + + + G +P L GPPGTGKT A +
Sbjct: 10 TFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA 69
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQ--DGKPCPPFKIVILDEADS 148
+ ++ SD + V A + F Q PC I+ +DE D+
Sbjct: 70 KVPFFT-----ISGSD-----FVEMFVGVGASRVRDMFEQAKKAAPC----IIFIDEIDA 115
Query: 149 M 149
+
Sbjct: 116 V 116
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 34.0 bits (78), Expect = 0.013
Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 46/133 (34%)
Query: 35 WVEKYRPKTIDDV--------------IEQQEVVSVLKKCLSGADLPH---FLFYGPPGT 77
W+ ++R ID+ IE + LK L G P +F GP T
Sbjct: 8 WI-RFRCSKIDEGGDWRPIVQFLRYQQIEFITFLGALKSFLKG--TPKKNCLVFCGPANT 64
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP 137
GK+ ++ H + G ++ S F + P
Sbjct: 65 GKSYFGMSFIHFIQG-----AVISFVNSTSH-----------FWLE----------PLTD 98
Query: 138 FKIVILDEADSMT 150
K+ +LD+A +
Sbjct: 99 TKVAMLDDATTTC 111
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 33.4 bits (75), Expect = 0.023
Identities = 25/171 (14%), Positives = 47/171 (27%), Gaps = 11/171 (6%)
Query: 70 LFYGPPGTGKT--STMIAA----CHQLFGDMYRERILELNASDDRGIQVIRD-----KVK 118
G PG GK I H G++ R+ ++ I+ V+
Sbjct: 5 FVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVE 64
Query: 119 TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVS 178
+Q ++D Q + K S CN
Sbjct: 65 ITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEI 124
Query: 179 CIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSG 229
CI + L S R E+ Y+ + ++ ++ + + +
Sbjct: 125 CIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDA 175
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 33.7 bits (76), Expect = 0.026
Identities = 26/127 (20%), Positives = 44/127 (34%), Gaps = 16/127 (12%)
Query: 37 EKYRPKTIDD-----VIEQQEVVSVL----KKCLSGADLPH-----FLFYGPPGTGKTST 82
++ K + D V Q + + L K +G H FLF GP G GKT
Sbjct: 9 DRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEV 68
Query: 83 MIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVI 142
+ L ++ R + E + + + + G D P +++
Sbjct: 69 TVQLSKALGIELLRFDMSEY--MERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLL 126
Query: 143 LDEADSM 149
LDE +
Sbjct: 127 LDEIEKA 133
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 33.5 bits (75), Expect = 0.031
Identities = 21/184 (11%), Positives = 55/184 (29%), Gaps = 20/184 (10%)
Query: 30 NKPVPWVEKY--RPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTM--IA 85
+KP+ +E + P +D V+ +++ + P G GK+ +A
Sbjct: 3 HKPINILEAFAAAPPPLDYVLP-----NMVAGTVG-------ALVSPGGAGKSMLALQLA 50
Query: 86 ACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDE 145
A D+ L + + + + + + ++I
Sbjct: 51 AQIAGGPDLLEVGELPTGPVIYLPAEDPPTAIHHRLHALGAHLSAEERQAVADGLLIQPL 110
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFC----LICNYVSCIIQPLTSRCSKFRFKPLAENTM 201
S+ + +++ + R L ++ R + +A +T
Sbjct: 111 IGSLPNIMAPEWFDGLKRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTG 170
Query: 202 LTRL 205
+ +
Sbjct: 171 CSIV 174
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 33.5 bits (76), Expect = 0.034
Identities = 22/142 (15%), Positives = 51/142 (35%), Gaps = 15/142 (10%)
Query: 37 EKYRPKTIDD-----VIEQQEVVSVL----KKCLSGADLPH-----FLFYGPPGTGKTST 82
E+ + +++ V+ Q E + + ++ +G P+ FLF GP G GKT
Sbjct: 10 EREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTEL 69
Query: 83 MIAACHQLFGDMYRERILELNASDDR-GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141
LF +++ ++ + + + G + P+ ++
Sbjct: 70 AKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVI 129
Query: 142 ILDEADSMTHAAQAALRRTMEK 163
+ DE + L + ++
Sbjct: 130 LFDEIEKAHPDVFNILLQILDD 151
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 33.1 bits (75), Expect = 0.039
Identities = 23/123 (18%), Positives = 46/123 (37%), Gaps = 4/123 (3%)
Query: 36 VEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF-GDM 94
+ R ID +I +++ + + L + L G G GKT+ ++ GD+
Sbjct: 9 NQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDV 68
Query: 95 YRERILELNASDDRGIQVIRDKVK-TFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAA 153
S D G + K + F ++ + Q + + +DE ++ A
Sbjct: 69 PEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSI--LFIDEIHTIIGAG 126
Query: 154 QAA 156
A+
Sbjct: 127 AAS 129
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 32.3 bits (72), Expect = 0.064
Identities = 43/241 (17%), Positives = 70/241 (29%), Gaps = 36/241 (14%)
Query: 43 TIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAACHQ 89
DDV ++ ++ +K+ + G P L YGPPGTGKT A ++
Sbjct: 2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE 61
Query: 90 LFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSM 149
+ E+ + + K A++ P F + A
Sbjct: 62 TGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKN--------APAIIFIDELDAIAPKR 113
Query: 150 THAAQAALRRTMEKETKSTRFCLICNYVSCI--------IQPLTSRCSKF----RFKPLA 197
RR + + +V + I P R +F
Sbjct: 114 EKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPD 173
Query: 198 ENTMLTRLQYICEQESVMCDFKALETLVET---SGGDMRRAITCLQSCARLKGGEGIVNE 254
L LQ + + D + ET G D+ + A K + I E
Sbjct: 174 ATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 233
Query: 255 D 255
D
Sbjct: 234 D 234
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 32.2 bits (73), Expect = 0.064
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 14/118 (11%)
Query: 51 QEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA-ACHQLFGDMYRERILELNASDDRG 109
+E++ +KK +S A+ P L G G GK ++A H+L + A +
Sbjct: 10 KEILEKIKK-ISCAECP-VLITGESGVGK--EVVARLIHKLSDRSKEPFV----ALNVAS 61
Query: 110 IQVIRDKVKTFAQQTASGFNQDGKPCPPFK-----IVILDEADSMTHAAQAALRRTME 162
I + + F + + F+ + LDE ++ AQA L R +E
Sbjct: 62 IPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIE 119
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 31.9 bits (71), Expect = 0.079
Identities = 10/33 (30%), Positives = 12/33 (36%)
Query: 68 HFLFYGPPGTGKTSTMIAACHQLFGDMYRERIL 100
H GPPG GKT+ + A L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGF 35
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 31.6 bits (71), Expect = 0.096
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 5/97 (5%)
Query: 18 SKTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGT 77
+K + T + + E YR D + + L + +F G G
Sbjct: 49 TKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGV 108
Query: 78 GKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIR 114
GK+S + R E++ RG R
Sbjct: 109 GKSSLL-----NAISPELGLRTNEISEHLGRGKHTTR 140
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 31.1 bits (69), Expect = 0.13
Identities = 21/156 (13%), Positives = 40/156 (25%), Gaps = 8/156 (5%)
Query: 69 FLFYGPPGTGKT--STMIAA----CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQ 122
G PG+GK I H GD+ R+ + + D I + +
Sbjct: 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQ-QSGSKDGEMIATMIKNGEIVPS 67
Query: 123 QTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
++ K ++D + M+ + + Q
Sbjct: 68 IVTVKLLKNAIDANQGKNFLVDG-FPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQ 126
Query: 183 PLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDF 218
L R ++ R Q ++ D
Sbjct: 127 RLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDH 162
>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia
coli, RepD [TaxId: 562]}
Length = 306
Score = 31.2 bits (69), Expect = 0.16
Identities = 21/168 (12%), Positives = 39/168 (23%), Gaps = 22/168 (13%)
Query: 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108
QQ+ V L G+GKT + L I
Sbjct: 5 GQQQAVE--------FVTGPCLVLAGAGSGKTRVITNKIAHL--------IRGCGYQARH 48
Query: 109 GIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKST 168
I + TF + A + K + ++R
Sbjct: 49 -IAAV-----TFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMKA 102
Query: 169 RFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMC 216
F L + + + K L + + T + + ++
Sbjct: 103 NFSLFDDTDQLALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPSQ 150
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 31.0 bits (68), Expect = 0.21
Identities = 19/159 (11%), Positives = 39/159 (24%), Gaps = 5/159 (3%)
Query: 65 DLPHFLFYGPPGTGKTSTMIAACHQLFGDMYR-----ERILELNASDDRGIQVIRDKVKT 119
L G G+GK+S + A L+ + + ++ A D +
Sbjct: 22 KEGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTK 81
Query: 120 FAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
+ K ++ +E +T + A+ MEK F
Sbjct: 82 YRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQG 141
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDF 218
I + + + +
Sbjct: 142 QIDAILESDEAREKVVREVLNLDKFETAYKKLSELKKTI 180
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 265
Score = 30.2 bits (67), Expect = 0.32
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 14/70 (20%)
Query: 41 PK-TIDDVIEQQEVVSVLKKCLS------------GADLPH-FLFYGPPGTGKTSTMIAA 86
P+ T +D+ ++V L++ + G LFYGPPG GKT A
Sbjct: 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 61
Query: 87 CHQLFGDMYR 96
++ +
Sbjct: 62 ANECQANFIS 71
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 30.1 bits (66), Expect = 0.33
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 61 LSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
L G P L G TGK+S + ++L
Sbjct: 24 LKGLRAPITLVLGLRRTGKSSIIKIGINEL 53
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 30.3 bits (67), Expect = 0.38
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 68 HFLFYGPPGTGKTSTMIAACHQL 90
H L G GTGK+ + +
Sbjct: 52 HLLVNGATGTGKSVLLRELAYTG 74
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 29.5 bits (65), Expect = 0.39
Identities = 21/155 (13%), Positives = 48/155 (30%), Gaps = 9/155 (5%)
Query: 70 LFYGPPGTGKT--STMIAA----CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ 123
+ GPPG GK + +A CH GDM R + + + + +
Sbjct: 7 VLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEM 66
Query: 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
++ + P +LD A+ +++ K + +
Sbjct: 67 VLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEK---LDSVIEFSIPDSLL 123
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDF 218
+ + + + RL+ Q + + ++
Sbjct: 124 IRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEY 158
>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 318
Score = 30.0 bits (66), Expect = 0.46
Identities = 10/37 (27%), Positives = 12/37 (32%), Gaps = 8/37 (21%)
Query: 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIA 85
EQQE V L G+GKT +
Sbjct: 15 EQQEAVR--------TTEGPLLIMAGAGSGKTRVLTH 43
>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Escherichia coli [TaxId: 562]}
Length = 313
Score = 29.6 bits (66), Expect = 0.52
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 70 LFYGPPGTGKTSTMIAACH-QLFGD 93
+F+G GTGKT T+ +L GD
Sbjct: 18 VFFGLSGTGKT-TLSTDPKRRLIGD 41
>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal
domain {Clostridium acetobutylicum [TaxId: 1488]}
Length = 141
Score = 28.9 bits (64), Expect = 0.56
Identities = 13/109 (11%), Positives = 34/109 (31%), Gaps = 2/109 (1%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERIL--ELNASDDRGIQVIRDKVKTFAQQTASG 127
+ GP +GK+ +I + + ++ E++ + V K A +
Sbjct: 11 VIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNS 70
Query: 128 FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
+++ +DE + + E + L ++
Sbjct: 71 REILKYFEEDTEVIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDF 119
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 29.3 bits (64), Expect = 0.57
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 5/30 (16%)
Query: 67 PHF----LFYGPPGTGKTSTMIAACHQLFG 92
P F G +GK+ ++ +F
Sbjct: 4 PFFAKTVAILGGESSGKS-VLVNKLAAVFN 32
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia
coli [TaxId: 562]}
Length = 222
Score = 28.8 bits (63), Expect = 0.72
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRER 98
G G GK++TM A L D+
Sbjct: 28 TLSGGNGAGKSTTMAAFVTALIPDLTLLH 56
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 28.7 bits (63), Expect = 0.90
Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 7/145 (4%)
Query: 64 ADLPHFLFYGPPGTGKT--STMIAACHQLF----GDMYRERILELNASDDRGIQVIRD-K 116
AD + G P +GK +I +QL GD+ R I + + R + + +
Sbjct: 1 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQ 60
Query: 117 VKTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY 176
+ + +P +LD A A + +T
Sbjct: 61 LVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLDVPDELL 120
Query: 177 VSCIIQPLTSRCSKFRFKPLAENTM 201
V ++ T K R + +N
Sbjct: 121 VERVVFDDTEEKVKLRLETYYQNIE 145
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 28.3 bits (63), Expect = 0.99
Identities = 9/27 (33%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 70 LFYGPPGTGKTST---MIAACHQLFGD 93
L G G GK+ T ++ H+L D
Sbjct: 18 LITGDSGVGKSETALELVQRGHRLIAD 44
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 28.4 bits (63), Expect = 1.2
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 70 LFYGPPGTGKTSTMIAACHQ-LFGD 93
+F+G GTGKT T+ + L GD
Sbjct: 18 VFFGLSGTGKT-TLSTDPERPLIGD 41
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 28.4 bits (63), Expect = 1.2
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 70 LFYGPPGTGKTSTMIAACH-QLFGD 93
+F+G GTGKT T+ A H L GD
Sbjct: 18 VFFGLSGTGKT-TLSADPHRNLIGD 41
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 28.1 bits (61), Expect = 1.2
Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 6/36 (16%)
Query: 73 GPPGTGKTST--MIAACHQLF----GDMYRERILEL 102
GP G GK + +A Q G +YR L
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAA 45
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 27.1 bits (59), Expect = 1.6
Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 15/109 (13%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDMY------------RERILELNASDDRGIQVIRDK 116
+ P G+GK++ + AA + + + + D +R
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTI 70
Query: 117 VKTFAQQTASGFNQDGKPCPPFK---IVILDEADSMTHAAQAALRRTME 162
++ I+I DE S + + ++
Sbjct: 71 TTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLD 119
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 28.1 bits (61), Expect = 1.6
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 70 LFYGPPGTGKTSTMIAACHQLF 91
+G TGK+
Sbjct: 38 ELFGEFRTGKSQLCHTLAVTCQ 59
>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal
domain {Ureaplasma urealyticum [TaxId: 2130]}
Length = 139
Score = 27.4 bits (60), Expect = 1.8
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 8/89 (8%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA---- 125
GP GKT+ +I H+ + ++ D R I+ I+ + T
Sbjct: 6 FITGPMFAGKTAELIRRLHR-LEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESA 64
Query: 126 ---SGFNQDGKPCPPFKIVILDEADSMTH 151
+ K++ +DE
Sbjct: 65 PEILNYIMSNSFNDETKVIGIDEVQFFDD 93
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 28.0 bits (61), Expect = 2.1
Identities = 25/147 (17%), Positives = 38/147 (25%), Gaps = 39/147 (26%)
Query: 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLF----------------- 91
EQQE V L G+GKT + L
Sbjct: 15 EQQEAVR--------TTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTN 66
Query: 92 ---GDMYRERILELNASDDRGIQVIRDKVKTF---AQQTASGFNQDGKPCPPFKIVILDE 145
+M RER+ L + + TF + F ILD
Sbjct: 67 KAAREM-RERVQSLLGGAAEDVW-----ISTFHSMCVRILRRDIDRIGINRNFS--ILDP 118
Query: 146 ADSMTHAAQAALRRTMEKETKSTRFCL 172
D ++ + ++ + R L
Sbjct: 119 TDQLSVMKTILKEKNIDPKKFEPRTIL 145
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 27.9 bits (61), Expect = 2.1
Identities = 12/57 (21%), Positives = 22/57 (38%), Gaps = 7/57 (12%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQL 90
++K P + + ++ L + + G PGTGKT+T+ L
Sbjct: 138 QTLDKLFPVSDEINWQKVAAAVALTR-------RISVISGGPGTGKTTTVAKLLAAL 187
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 27.2 bits (60), Expect = 2.1
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 70 LFYGPPGTGKTST---MIAACHQLFGD 93
L G G GK+ T +I H+L D
Sbjct: 19 LITGDSGIGKSETALELIKRGHRLVAD 45
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 27.6 bits (60), Expect = 2.4
Identities = 9/42 (21%), Positives = 15/42 (35%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQ 111
L G GTGKT + + R + S + ++
Sbjct: 30 LATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLR 71
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 27.0 bits (58), Expect = 2.6
Identities = 14/126 (11%), Positives = 38/126 (30%), Gaps = 3/126 (2%)
Query: 69 FLFYGPPGTGKTS---TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTA 125
L G PG+GK++ IA + + + A ++R K +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 126 SGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLT 185
+ ++ ++ + A ++ + + +++ +
Sbjct: 65 FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNS 124
Query: 186 SRCSKF 191
R +K
Sbjct: 125 KRGTKA 130
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 27.2 bits (59), Expect = 2.6
Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 14/155 (9%)
Query: 70 LFYGPPGTGKT--STMIAA----CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ 123
+ G PG GK + I H GDM+R I E + + D+ +
Sbjct: 4 VLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVK-AKSFMDQGALVPDE 62
Query: 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
G ++ L + T AL + + + + +
Sbjct: 63 VTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEH---VLNIQVEKEE 119
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDF 218
L +R + +T+ RL+ Q + + F
Sbjct: 120 LIARLTADDNP----DTVTNRLEVNMNQTAPLLAF 150
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 27.4 bits (59), Expect = 2.7
Identities = 35/210 (16%), Positives = 61/210 (29%), Gaps = 16/210 (7%)
Query: 42 KTIDDVIEQQEVVSVLKKCLSGAD------LPH---FLFYGPPGTGKTS--TMIAACHQL 90
K+ D+++Q+ V L S D L F G G+GKT Q
Sbjct: 1 KSGIDLLKQRSTVWKLSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQN 60
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQ----TASGFNQDGKPCPPFKIVILDEA 146
++ + + V D TF + A DG+ +
Sbjct: 61 PEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV-LDNTFVARAY 119
Query: 147 DSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ 206
+S A + +E + + +I + S T R + M T +
Sbjct: 120 NSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNK 179
Query: 207 YICEQESVMCDFKALETLVETSGGDMRRAI 236
V+ + + G +AI
Sbjct: 180 LADLFNCVVLVTNQVSAKPDAFFGMAEQAI 209
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.0 bits (59), Expect = 2.7
Identities = 9/52 (17%), Positives = 15/52 (28%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTF 120
L G G GKT+T+ + + G + + K
Sbjct: 9 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRL 60
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 27.2 bits (59), Expect = 2.7
Identities = 17/146 (11%), Positives = 33/146 (22%), Gaps = 12/146 (8%)
Query: 70 LFYGPPGTGKTSTMIAACHQLFGDMYRERIL------ELNASDDRGIQVIRDKVKTFAQQ 123
+ G PG G T T + + + + RD+++ +
Sbjct: 5 VVTGVPGVGST-TSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPE 63
Query: 124 TASGFNQDGKPCPP----FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSC 179
T + V +D + + L LI +
Sbjct: 64 TQKRIQKMAGRKIAEMAKESPVAVDTHST-VSTPKGYLPGLPSWVLNELNPDLIIVVETT 122
Query: 180 IIQPLTSRCSKFRFKPLAENTMLTRL 205
+ L R S +
Sbjct: 123 GDEILMRRMSDETRVRDLDTASTIEQ 148
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 27.1 bits (58), Expect = 2.8
Identities = 19/151 (12%), Positives = 31/151 (20%), Gaps = 8/151 (5%)
Query: 70 LFYGPPGTGKTSTM--IAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASG 127
+G TGKT +A QL D + + + R A
Sbjct: 27 EMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPER------LLAVAER 80
Query: 128 FNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSR 187
+ G M + + +
Sbjct: 81 YGLSGSDVLDNVAYARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGE 140
Query: 188 CSKFRFKPLAENTMLTRLQYICEQESVMCDF 218
S + ML RL V+ +
Sbjct: 141 LSARQMHLARFLRMLLRLADEFGVAVVITNQ 171
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 27.0 bits (59), Expect = 2.8
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIR 114
+ G G+GKT+T G R ++ + + +R
Sbjct: 13 WFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLR 58
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 26.9 bits (58), Expect = 2.8
Identities = 9/31 (29%), Positives = 12/31 (38%)
Query: 66 LPHFLFYGPPGTGKTSTMIAACHQLFGDMYR 96
+P F GTGKT+ + L R
Sbjct: 2 IPLLAFAAWSGTGKTTLLKKLIPALCARGIR 32
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 27.3 bits (59), Expect = 2.9
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 6/31 (19%)
Query: 73 GPPGTGKTST--MIAACHQLF----GDMYRE 97
GP +GK++ +IA G MYR
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 40
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 27.1 bits (59), Expect = 3.0
Identities = 30/204 (14%), Positives = 55/204 (26%), Gaps = 19/204 (9%)
Query: 39 YRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACH---QLFGDMY 95
R +D VI++ L + + D +G G+GK+ A QL G Y
Sbjct: 24 IREYHVDRVIKK------LDE-MCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY 76
Query: 96 RERI---LELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPP-----FKIVILDEAD 147
+ A + ++ F ++D +
Sbjct: 77 DSIVWLKDSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPN 136
Query: 148 SMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTMLTRLQ- 206
++ T+ + CL+ I + C L + L+
Sbjct: 137 TLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEA 196
Query: 207 YICEQESVMCDFKALETLVETSGG 230
Y + L +E S G
Sbjct: 197 YGMPMPVGEKEEDVLNKTIELSSG 220
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 27.0 bits (59), Expect = 3.0
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 8/66 (12%)
Query: 49 EQQEVVSVLKKCLSGADLPHFLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDR 108
+ + LK+ L G G G GK+S + + R+ E++ R
Sbjct: 81 KTGMGIEELKEYLKG---KISTMAGLSGVGKSSLL-----NAINPGLKLRVSEVSEKLQR 132
Query: 109 GIQVIR 114
G
Sbjct: 133 GRHTTT 138
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 27.0 bits (58), Expect = 3.2
Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 5/170 (2%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGF 128
L G G+GK+S + A L+ + + I + + D +
Sbjct: 26 NLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTKVGARDTYIDLIFEKDGTKYRIT 85
Query: 129 NQDGKPCPP-----FKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
+ K K ++ +E +T + A+ MEK F I
Sbjct: 86 RRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLIPYNIFLNAIYIRQGQIDA 145
Query: 184 LTSRCSKFRFKPLAENTMLTRLQYICEQESVMCDFKALETLVETSGGDMR 233
+ + + E ++ + S + + + +
Sbjct: 146 ILESAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGK 195
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.5 bits (57), Expect = 3.4
Identities = 10/37 (27%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 65 DLPHF--LFYGPPGTGKTSTMIAACHQLFGDMYRERI 99
+LP + + G G GK++ I ++F Y I
Sbjct: 1 NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTI 37
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 26.8 bits (58), Expect = 3.8
Identities = 19/120 (15%), Positives = 33/120 (27%), Gaps = 18/120 (15%)
Query: 73 GPPGTGKTSTMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDG 132
G PG GK++T+ A L G +V V + +T D
Sbjct: 58 GVPGVGKSTTIDALGSLL---------------TAAGHKVAVLAVDPSSTRTGGSILGD- 101
Query: 133 KPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNY-VSCIIQPLTSRCSKF 191
++ I A + L K ++ C + V + +
Sbjct: 102 -KTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETA 160
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 26.5 bits (57), Expect = 4.5
Identities = 17/157 (10%), Positives = 38/157 (24%), Gaps = 20/157 (12%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLF-------GDMYRERILELNASDDRGI-QVIRDKVKTF 120
L G PG+GK++ A + D I +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQI 66
Query: 121 AQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCI 180
A A + ++G + + + + ++ +
Sbjct: 67 AADVAGRYAKEGYFVI------------LDGVVRPDWLPAFTALARPLHYIVLRTTAAEA 114
Query: 181 IQPLTSRCSKFRFKPLAENTMLTRLQYICEQESVMCD 217
I+ R PL + ++ + E +
Sbjct: 115 IERCLDRGGDSLSDPLVVADLHSQFADLGAFEHHVLP 151
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 26.5 bits (57), Expect = 4.7
Identities = 15/122 (12%), Positives = 33/122 (27%), Gaps = 12/122 (9%)
Query: 69 FLFYGPPGTGKTSTMIAACHQL-----------FGDMYRERILELNASDDRGIQVIRDKV 117
+ G PG GK++ + L +GD L+L + DR
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVE 63
Query: 118 KTFAQQTASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYV 177
K Q + + + + + ++ L + + + +
Sbjct: 64 KQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPG-LPSYVITEINPSVIFLL 122
Query: 178 SC 179
Sbjct: 123 EA 124
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 26.4 bits (57), Expect = 4.8
Identities = 23/140 (16%), Positives = 38/140 (27%), Gaps = 6/140 (4%)
Query: 70 LFYGPPGTGKT--STMIAA----CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ 123
L GPPG GK + +A G+++R I E + + +
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDL 63
Query: 124 TASGFNQDGKPCPPFKIVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQP 183
T + ILD A+A + T +++
Sbjct: 64 TNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLER 123
Query: 184 LTSRCSKFRFKPLAENTMLT 203
L R + N M
Sbjct: 124 LKGRGRADDTDDVILNRMKV 143
>d1s2xa_ a.47.3.1 (A:) Cag-Z {Helicobacter pylori [TaxId: 210]}
Length = 180
Score = 26.2 bits (57), Expect = 4.8
Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 23/123 (18%)
Query: 91 FGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIVILDEADSMT 150
F + R++IL+ N+S R +RDK F Q A+ P D +
Sbjct: 6 FNEAERQKILDSNSSLMRNANEVRDK---FIQNYATSLKDSNDP-----------QDFLR 51
Query: 151 HAAQAALRRTMEKETKSTRFCLICNYVSCIIQPLTSRCSKFRFKPLAENTM---LTRLQY 207
+ LR M+K S F NY++ ++ +RC + K AE+T+ LT ++
Sbjct: 52 RVQE--LRINMQKNFIS--FDAYYNYLNNLVLASYNRCKQ--EKTFAESTIKNELTLGEF 105
Query: 208 ICE 210
+ E
Sbjct: 106 VAE 108
>d3byqa1 d.79.9.1 (A:2-192) Uncharacterized protein BB2672
{Bordetella bronchiseptica [TaxId: 518]}
Length = 191
Score = 26.2 bits (58), Expect = 5.1
Identities = 12/75 (16%), Positives = 26/75 (34%), Gaps = 4/75 (5%)
Query: 34 PWVEKYRPKTIDDVIEQQEVVSVL-KKCLSGADLPHFLFYGPPGTGKTSTMI---AACHQ 89
P+ +Y P + + E + + ++L + + + Y + A H+
Sbjct: 39 PYAGRYEPDLMPFMAELRSLGTLLATELVDTLGKDNIEVYSKAAIVGVDGEMEHGAVWHE 98
Query: 90 LFGDMYRERILELNA 104
G R + E A
Sbjct: 99 AGGWAMRSVLGEPKA 113
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 26.1 bits (56), Expect = 5.3
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 6/61 (9%)
Query: 61 LSGADLPHFLFYGPPGTGKT--STMIAA----CHQLFGDMYRERILELNASDDRGIQVIR 114
S + G PG GK + H GD+ R + I+
Sbjct: 3 FSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCI 62
Query: 115 D 115
Sbjct: 63 K 63
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 26.2 bits (56), Expect = 5.3
Identities = 8/27 (29%), Positives = 10/27 (37%), Gaps = 2/27 (7%)
Query: 70 LFYGPPGTGKTS--TMIAACHQLFGDM 94
+G TGKT + QL G
Sbjct: 41 EAFGEFRTGKTQLSHTLCVTAQLPGAG 67
>d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 298
Score = 26.6 bits (57), Expect = 5.4
Identities = 12/45 (26%), Positives = 17/45 (37%), Gaps = 3/45 (6%)
Query: 50 QQEVVSVLKKCLSG---ADLPHFLFYGPPGTGKTSTMIAACHQLF 91
Q+E V L C++G + + G GKT I L
Sbjct: 60 QREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLL 104
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 26.1 bits (57), Expect = 6.1
Identities = 9/27 (33%), Positives = 11/27 (40%), Gaps = 3/27 (11%)
Query: 70 LFYGPPGTGKTST---MIAACHQLFGD 93
L G G GK+ +I H GD
Sbjct: 19 LLTGRSGIGKSECALDLINKNHLFVGD 45
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 25.6 bits (55), Expect = 7.2
Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 8/65 (12%)
Query: 69 FLFYGPPGTGKTSTMIAACHQLF--------GDMYRERILELNASDDRGIQVIRDKVKTF 120
L G G GKT+ + F G +RE+ + NA G KV
Sbjct: 8 LLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQ 67
Query: 121 AQQTA 125
TA
Sbjct: 68 LWDTA 72
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 25.8 bits (55), Expect = 7.6
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 70 LFYGPPGTGKTSTMIAACHQ 89
+G G+GKT
Sbjct: 40 EVFGEFGSGKTQLAHTLAVM 59
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 25.7 bits (55), Expect = 7.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 66 LPHFLFYGPPGTGKTS 81
LP+ L G PG GKT+
Sbjct: 4 LPNILLTGTPGVGKTT 19
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 25.9 bits (56), Expect = 7.8
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 69 FLFYGPPGTGKTST 82
+ G GTGK +T
Sbjct: 15 IMLVGVQGTGKATT 28
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 25.6 bits (55), Expect = 7.9
Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 8/132 (6%)
Query: 70 LFYGPPGTGKT--STMIAA----CHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQ 123
+ G PG GK + I A H GDM+R + + + D+ +
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAM-KEGTPLGLQAKQYMDRGDLVPDE 62
Query: 124 TASGFNQDGKPCPPFK-IVILDEADSMTHAAQAALRRTMEKETKSTRFCLICNYVSCIIQ 182
G ++ + +LD A+A + K I +++
Sbjct: 63 VTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLME 122
Query: 183 PLTSRCSKFRFK 194
LT+ ++
Sbjct: 123 RLTADDNEATVA 134
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 25.4 bits (54), Expect = 8.7
Identities = 7/39 (17%), Positives = 16/39 (41%), Gaps = 6/39 (15%)
Query: 69 FLFYGPPGTGKTS------TMIAACHQLFGDMYRERILE 101
++ GP G GK++ + + GD+ ++
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVG 43
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 25.4 bits (55), Expect = 8.9
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 69 FLFYGPPGTGKTST 82
L G G GKT+T
Sbjct: 12 ILMVGVNGVGKTTT 25
>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 145
Score = 25.1 bits (54), Expect = 9.0
Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 17/73 (23%)
Query: 82 TMIAACHQLFGDMYRERILELNASDDRGIQVIRDKVKTFAQQTASGFNQDGKPCPPFKIV 141
+I + M R + + NA +++ K A+ C V
Sbjct: 78 VIITSGVPRKEGMSRMDLAKTNA------KIVGKYAKKIAEI-----------CDTKIFV 120
Query: 142 ILDEADSMTHAAQ 154
I + D MT+ A
Sbjct: 121 ITNPVDVMTYKAL 133
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 25.6 bits (55), Expect = 9.8
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 5/79 (6%)
Query: 19 KTSVSTSGKTRNKPVPWVEKYRPKTIDDVIEQQEVVSVLKKCLSGADLPHFLFYGPPGTG 78
K S + K + + EK + + D + E + ++ S L GP G+G
Sbjct: 26 KKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSN-----ILLIGPTGSG 80
Query: 79 KTSTMIAACHQLFGDMYRE 97
KT L +
Sbjct: 81 KTLMAQTLAKHLDIPIAIS 99
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.386
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,282,313
Number of extensions: 59972
Number of successful extensions: 374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 105
Length of query: 355
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 269
Effective length of database: 1,226,816
Effective search space: 330013504
Effective search space used: 330013504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)