Query psy17906
Match_columns 174
No_of_seqs 184 out of 1688
Neff 5.7
Searched_HMMs 46136
Date Fri Aug 16 17:09:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02469 hydroxyacylglutathion 99.8 6.6E-19 1.4E-23 149.3 10.1 80 91-173 1-80 (258)
2 PRK10241 hydroxyacylglutathion 99.7 1E-17 2.2E-22 141.0 9.9 79 91-173 1-79 (251)
3 PLN02398 hydroxyacylglutathion 99.7 1.6E-17 3.6E-22 145.8 9.6 80 90-173 75-154 (329)
4 TIGR03413 GSH_gloB hydroxyacyl 99.7 5.4E-17 1.2E-21 136.3 9.1 76 93-173 1-76 (248)
5 KOG0813|consensus 99.5 7.9E-15 1.7E-19 125.4 6.6 74 96-172 7-85 (265)
6 PLN02962 hydroxyacylglutathion 99.5 3E-14 6.6E-19 120.7 9.8 79 90-172 10-94 (251)
7 PRK00055 ribonuclease Z; Revie 99.3 2.5E-11 5.4E-16 100.4 8.8 79 90-173 1-93 (270)
8 PRK02126 ribonuclease Z; Provi 99.2 1.1E-10 2.3E-15 102.7 8.8 71 98-172 13-84 (334)
9 PF00753 Lactamase_B: Metallo- 99.1 6E-11 1.3E-15 90.1 5.2 59 100-161 5-68 (194)
10 TIGR00649 MG423 conserved hypo 99.1 3.3E-10 7.2E-15 101.5 9.0 75 92-172 2-91 (422)
11 smart00849 Lactamase_B Metallo 99.1 3.1E-10 6.7E-15 87.1 7.6 68 99-173 4-74 (183)
12 PRK11921 metallo-beta-lactamas 99.1 3.1E-10 6.8E-15 101.0 7.0 67 99-172 31-102 (394)
13 COG1237 Metal-dependent hydrol 99.0 5.3E-10 1.1E-14 95.4 7.5 67 102-172 22-92 (259)
14 TIGR02651 RNase_Z ribonuclease 99.0 2.1E-09 4.6E-14 91.0 8.1 68 101-173 18-91 (299)
15 COG0491 GloB Zn-dependent hydr 99.0 3.1E-09 6.7E-14 84.9 8.4 65 99-164 22-90 (252)
16 PRK05452 anaerobic nitric oxid 98.9 1.4E-09 3.1E-14 99.6 7.0 67 99-172 33-104 (479)
17 PRK05184 pyrroloquinoline quin 98.9 2.7E-09 5.9E-14 92.3 7.8 65 101-172 38-112 (302)
18 PRK02113 putative hydrolase; P 98.9 4.7E-09 1E-13 87.2 8.4 66 102-172 35-101 (252)
19 TIGR02649 true_RNase_BN ribonu 98.9 5.8E-09 1.3E-13 89.4 8.2 68 104-173 19-94 (303)
20 PRK11539 ComEC family competen 98.9 1.1E-08 2.5E-13 98.2 10.4 77 89-171 499-583 (755)
21 TIGR00361 ComEC_Rec2 DNA inter 98.9 1.3E-08 2.7E-13 96.5 10.3 77 90-172 439-523 (662)
22 KOG0814|consensus 98.8 4.7E-09 1E-13 86.1 4.4 66 99-164 18-85 (237)
23 TIGR03675 arCOG00543 arCOG0054 98.8 1.1E-08 2.5E-13 96.7 7.1 78 89-172 173-261 (630)
24 PRK11244 phnP carbon-phosphoru 98.8 2.7E-08 5.9E-13 82.8 8.2 64 103-173 38-101 (250)
25 COG1234 ElaC Metal-dependent h 98.8 3.1E-08 6.7E-13 85.6 8.5 79 90-172 1-92 (292)
26 PRK04286 hypothetical protein; 98.7 1.6E-08 3.4E-13 87.4 5.3 63 91-156 1-85 (298)
27 TIGR02108 PQQ_syn_pqqB coenzym 98.7 2.1E-08 4.6E-13 87.1 6.1 66 102-172 38-111 (302)
28 COG0595 mRNA degradation ribon 98.7 3.3E-08 7.1E-13 92.5 7.0 78 89-172 7-99 (555)
29 TIGR03307 PhnP phosphonate met 98.6 8.5E-08 1.8E-12 79.2 6.6 63 104-173 29-91 (238)
30 PRK00685 metal-dependent hydro 98.6 6.5E-08 1.4E-12 78.7 5.1 71 91-172 1-72 (228)
31 COG0426 FpaA Uncharacterized f 98.4 4.7E-07 1E-11 81.5 6.5 67 99-172 34-105 (388)
32 COG2333 ComEC Predicted hydrol 98.3 1.9E-06 4.1E-11 75.1 8.2 66 92-160 45-114 (293)
33 PF12706 Lactamase_B_2: Beta-l 98.3 2.9E-07 6.2E-12 72.1 2.5 57 115-172 2-64 (194)
34 COG1235 PhnP Metal-dependent h 98.2 1.9E-06 4.1E-11 73.0 5.0 44 115-160 42-86 (269)
35 TIGR02650 RNase_Z_T_toga ribon 98.0 5.5E-06 1.2E-10 71.7 4.3 65 104-173 12-81 (277)
36 COG1782 Predicted metal-depend 98.0 1.2E-05 2.6E-10 74.7 5.9 80 88-173 178-268 (637)
37 COG1236 YSH1 Predicted exonucl 97.8 3.9E-05 8.4E-10 69.7 6.2 68 99-173 12-83 (427)
38 KOG1136|consensus 97.4 0.00018 3.8E-09 64.5 4.8 75 91-171 4-93 (501)
39 PF13483 Lactamase_B_3: Beta-l 97.2 0.00026 5.7E-09 55.1 3.3 48 99-152 5-52 (163)
40 KOG1135|consensus 97.2 0.00071 1.5E-08 64.8 6.3 68 101-172 14-85 (764)
41 COG2220 Predicted Zn-dependent 97.2 0.0012 2.6E-08 55.3 6.6 66 88-159 4-75 (258)
42 COG2015 Alkyl sulfatase and re 97.1 0.00051 1.1E-08 64.0 4.2 68 101-172 126-201 (655)
43 PF14597 Lactamase_B_5: Metall 96.9 0.0026 5.6E-08 52.6 6.4 66 99-174 21-87 (199)
44 PRK11709 putative L-ascorbate 96.9 0.001 2.2E-08 59.4 4.2 35 136-172 109-145 (355)
45 KOG2121|consensus 96.4 0.0032 6.9E-08 60.7 3.8 70 89-160 441-525 (746)
46 COG3491 PcbC Isopenicillin N s 95.5 0.0074 1.6E-07 53.3 1.9 32 23-54 224-255 (322)
47 PLN03002 oxidoreductase, 2OG-F 95.3 0.0085 1.8E-07 52.7 1.6 31 24-54 238-268 (332)
48 PLN02365 2-oxoglutarate-depend 95.2 0.011 2.3E-07 51.3 1.9 31 24-54 202-232 (300)
49 PLN02984 oxidoreductase, 2OG-F 95.1 0.0094 2E-07 52.8 1.3 32 23-54 249-280 (341)
50 PLN03001 oxidoreductase, 2OG-F 95.1 0.011 2.5E-07 50.4 1.8 31 24-54 166-196 (262)
51 PLN00417 oxidoreductase, 2OG-F 95.1 0.011 2.3E-07 52.5 1.5 31 24-54 254-284 (348)
52 PLN02750 oxidoreductase, 2OG-F 95.0 0.012 2.6E-07 51.9 1.7 32 23-54 244-275 (345)
53 PF02112 PDEase_II: cAMP phosp 95.0 0.05 1.1E-06 48.5 5.5 51 104-154 19-97 (335)
54 COG2248 Predicted hydrolase (m 95.0 0.021 4.6E-07 49.5 3.0 41 112-152 23-81 (304)
55 PLN02254 gibberellin 3-beta-di 94.8 0.015 3.3E-07 51.8 1.8 31 24-54 261-291 (358)
56 PLN02216 protein SRG1 94.8 0.012 2.7E-07 52.2 1.2 32 23-54 260-291 (357)
57 PLN02156 gibberellin 2-beta-di 94.8 0.014 3.1E-07 51.6 1.6 32 23-54 230-261 (335)
58 PLN02704 flavonol synthase 94.7 0.014 3E-07 51.4 1.3 31 24-54 249-279 (335)
59 KOG1137|consensus 94.7 0.013 2.8E-07 55.3 1.2 68 90-160 13-89 (668)
60 PLN02299 1-aminocyclopropane-1 94.7 0.015 3.3E-07 51.0 1.5 31 24-54 209-239 (321)
61 PLN02485 oxidoreductase 94.7 0.016 3.5E-07 50.6 1.7 32 23-54 239-270 (329)
62 PLN02912 oxidoreductase, 2OG-F 94.7 0.013 2.9E-07 51.9 1.1 32 23-54 246-277 (348)
63 PLN02904 oxidoreductase 94.7 0.015 3.3E-07 51.7 1.5 31 24-54 258-288 (357)
64 PLN02515 naringenin,2-oxogluta 94.6 0.016 3.5E-07 51.6 1.4 31 24-54 247-277 (358)
65 PLN02639 oxidoreductase, 2OG-F 94.6 0.017 3.8E-07 50.8 1.6 31 24-54 241-271 (337)
66 PLN02997 flavonol synthase 94.5 0.019 4E-07 50.5 1.6 31 24-54 233-263 (325)
67 PLN02393 leucoanthocyanidin di 94.5 0.017 3.8E-07 51.4 1.4 32 23-54 263-294 (362)
68 PF13691 Lactamase_B_4: tRNase 94.4 0.13 2.9E-06 35.2 5.4 45 104-152 14-63 (63)
69 PTZ00273 oxidase reductase; Pr 94.4 0.022 4.7E-07 49.6 1.8 33 23-55 228-260 (320)
70 PLN03178 leucoanthocyanidin di 94.3 0.022 4.7E-07 50.6 1.7 31 24-54 261-291 (360)
71 PLN02276 gibberellin 20-oxidas 94.3 0.027 5.8E-07 50.2 2.1 32 23-54 255-286 (361)
72 PLN02758 oxidoreductase, 2OG-F 93.8 0.027 5.8E-07 50.2 1.3 32 23-54 262-293 (361)
73 PLN02403 aminocyclopropanecarb 93.8 0.03 6.4E-07 48.9 1.4 31 24-54 204-235 (303)
74 PLN02947 oxidoreductase 93.3 0.024 5.1E-07 50.9 0.0 31 24-54 275-305 (374)
75 KOG0143|consensus 92.0 0.077 1.7E-06 46.7 1.4 31 24-54 228-258 (322)
76 PF14234 DUF4336: Domain of un 80.4 9.4 0.0002 33.5 7.7 66 104-173 22-91 (285)
77 KOG4736|consensus 77.0 2 4.3E-05 37.9 2.5 47 104-157 97-146 (302)
78 COG5212 PDE1 Low-affinity cAMP 76.4 0.97 2.1E-05 40.0 0.4 19 136-154 112-130 (356)
79 KOG1137|consensus 72.8 8.3 0.00018 37.1 5.6 83 84-171 144-245 (668)
80 KOG3592|consensus 61.8 11 0.00024 37.3 4.2 45 114-159 58-104 (934)
81 PF14572 Pribosyl_synth: Phosp 58.8 14 0.0003 30.4 3.8 41 117-159 92-133 (184)
82 KOG1361|consensus 56.6 4.6 0.0001 37.8 0.7 20 136-155 112-131 (481)
83 PRK00129 upp uracil phosphorib 51.8 37 0.00081 27.8 5.3 54 112-172 124-183 (209)
84 PRK02269 ribose-phosphate pyro 47.2 34 0.00073 30.1 4.6 32 117-148 226-258 (320)
85 PRK04923 ribose-phosphate pyro 45.1 35 0.00076 30.1 4.4 32 117-148 226-258 (319)
86 TIGR01091 upp uracil phosphori 43.1 56 0.0012 26.7 5.0 54 112-172 122-181 (207)
87 PLN02297 ribose-phosphate pyro 41.2 27 0.00059 31.0 3.1 32 117-148 239-271 (326)
88 COG4566 TtrR Response regulato 41.0 51 0.0011 27.6 4.4 45 113-158 49-97 (202)
89 PRK07199 phosphoribosylpyropho 37.9 29 0.00064 30.2 2.7 31 117-147 220-251 (301)
90 PRK00553 ribose-phosphate pyro 37.4 55 0.0012 29.0 4.4 37 112-148 218-259 (332)
91 PF14681 UPRTase: Uracil phosp 35.2 69 0.0015 26.2 4.4 52 112-172 121-182 (207)
92 KOG1448|consensus 34.3 94 0.002 27.8 5.2 44 104-147 206-254 (316)
93 PRK02458 ribose-phosphate pyro 33.8 42 0.00091 29.6 3.1 32 117-148 227-259 (323)
94 PF14545 DBB: Dof, BCAP, and B 33.5 20 0.00044 28.3 0.9 50 4-53 81-135 (142)
95 cd02653 nuc_hydro_3 NH_3: A su 31.6 1E+02 0.0023 26.9 5.2 57 116-173 2-65 (320)
96 COG0462 PrsA Phosphoribosylpyr 31.3 75 0.0016 28.3 4.2 52 105-158 207-263 (314)
97 PF03171 2OG-FeII_Oxy: 2OG-Fe( 30.6 28 0.0006 24.2 1.2 30 25-54 52-81 (98)
98 PTZ00145 phosphoribosylpyropho 30.0 73 0.0016 29.6 4.1 32 117-148 344-376 (439)
99 cd02650 nuc_hydro_CaPnhB NH_hy 29.7 1.1E+02 0.0023 26.4 4.8 57 116-173 2-65 (304)
100 cd02651 nuc_hydro_IU_UC_XIUA n 29.3 1E+02 0.0022 26.4 4.7 56 116-172 2-64 (302)
101 PLN02717 uridine nucleosidase 28.0 1.2E+02 0.0026 26.5 4.9 57 116-173 3-66 (316)
102 PLN02541 uracil phosphoribosyl 27.7 1E+02 0.0022 26.3 4.3 52 113-173 158-219 (244)
103 PF01156 IU_nuc_hydro: Inosine 27.7 84 0.0018 26.8 3.8 59 115-173 3-68 (312)
104 COG1117 PstB ABC-type phosphat 26.5 55 0.0012 28.3 2.4 39 104-145 169-207 (253)
105 PLN02369 ribose-phosphate pyro 25.1 90 0.0019 27.2 3.6 46 112-158 202-252 (302)
106 PRK01259 ribose-phosphate pyro 24.7 67 0.0014 28.1 2.7 46 112-158 208-258 (309)
107 cd02647 nuc_hydro_TvIAG nuc_hy 24.4 1.9E+02 0.0041 25.3 5.5 58 116-173 3-69 (312)
108 PRK06827 phosphoribosylpyropho 24.4 1.4E+02 0.003 27.2 4.7 46 113-160 265-315 (382)
109 cd00455 nuc_hydro nuc_hydro: N 23.8 1.3E+02 0.0028 25.8 4.3 44 129-173 18-64 (295)
110 PRK00934 ribose-phosphate pyro 23.5 75 0.0016 27.3 2.8 45 113-158 205-254 (285)
111 PRK10443 rihA ribonucleoside h 23.1 1.7E+02 0.0037 25.4 5.0 58 115-173 4-68 (311)
112 PF00156 Pribosyltran: Phospho 22.8 98 0.0021 22.0 2.9 25 117-141 97-122 (125)
113 PRK03092 ribose-phosphate pyro 22.6 88 0.0019 27.3 3.1 45 113-158 202-251 (304)
114 PRK05096 guanosine 5'-monophos 22.4 1.2E+02 0.0027 27.4 4.0 46 123-171 110-157 (346)
115 cd02072 Glm_B12_BD B12 binding 21.9 2.8E+02 0.0062 21.3 5.4 54 115-171 28-87 (128)
116 cd07410 MPP_CpdB_N Escherichia 21.7 2.8E+02 0.0062 23.0 5.9 79 85-164 132-220 (277)
117 PRK14525 rpsP 30S ribosomal pr 20.9 44 0.00095 24.4 0.7 38 14-52 32-69 (88)
118 TIGR01303 IMP_DH_rel_1 IMP deh 20.9 1.9E+02 0.0041 27.0 5.0 47 122-171 225-272 (475)
No 1
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.78 E-value=6.6e-19 Score=149.35 Aligned_cols=80 Identities=46% Similarity=0.833 Sum_probs=74.2
Q ss_pred eEEEEecccCCeeEEEEEECCCCeEEEEeCCChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCCCccccEEE
Q psy17906 91 YTVDLIPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYG 170 (174)
Q Consensus 91 M~I~~ip~~~~Ny~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~ 170 (174)
|+|..+|++.+||+|+|.++++++++|||||+.+.+++.+++.+.+|++||+||+|+||+||+..|++.+|+++ ||+
T Consensus 1 ~~i~~~~~~~dNy~Yli~d~~~~~~vlIDp~~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~~~---V~~ 77 (258)
T PLN02469 1 MKIIPVPCLEDNYAYLIIDESTKDAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPGIK---VYG 77 (258)
T ss_pred CeEEEeccccceEEEEEEeCCCCeEEEECCCChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCCCE---EEE
Confidence 67888999999999999988778999999999999999999999999999999999999999999999998787 999
Q ss_pred cCC
Q psy17906 171 LKM 173 (174)
Q Consensus 171 ~~~ 173 (174)
+..
T Consensus 78 ~~~ 80 (258)
T PLN02469 78 GSL 80 (258)
T ss_pred ech
Confidence 864
No 2
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.74 E-value=1e-17 Score=140.98 Aligned_cols=79 Identities=35% Similarity=0.711 Sum_probs=72.6
Q ss_pred eEEEEecccCCeeEEEEEECCCCeEEEEeCCChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCCCccccEEE
Q psy17906 91 YTVDLIPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYG 170 (174)
Q Consensus 91 M~I~~ip~~~~Ny~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~ 170 (174)
|+|..+|++.+||+|++.++ +++++|||||+.+.+++.+++.+.++++|++||+|+||+||+..|++++++++ ||+
T Consensus 1 ~~i~~~~~~~dNy~~li~~~-~~~~ilIDpg~~~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~~~---V~~ 76 (251)
T PRK10241 1 MNLNSIPAFDDNYIWVLNDE-AGRCLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQIV---VYG 76 (251)
T ss_pred CeeEEeeeecceEEEEEEcC-CCcEEEECCCChHHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCCCE---EEe
Confidence 68999999999999999876 47899999999899999999999999999999999999999999999997777 999
Q ss_pred cCC
Q psy17906 171 LKM 173 (174)
Q Consensus 171 ~~~ 173 (174)
+..
T Consensus 77 ~~~ 79 (251)
T PRK10241 77 PQE 79 (251)
T ss_pred ccc
Confidence 753
No 3
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.72 E-value=1.6e-17 Score=145.77 Aligned_cols=80 Identities=40% Similarity=0.730 Sum_probs=74.5
Q ss_pred ceEEEEecccCCeeEEEEEECCCCeEEEEeCCChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCCCccccEE
Q psy17906 90 KYTVDLIPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVY 169 (174)
Q Consensus 90 ~M~I~~ip~~~~Ny~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy 169 (174)
.|+|..+|++++||+|+|.+++++++++|||++.+.+++++++.+.+|++|++||+|+||+||+.+|++.+ +++ ||
T Consensus 75 ~~~i~~ip~l~dNy~Yli~d~~t~~~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~-ga~---V~ 150 (329)
T PLN02398 75 SLQIELVPCLKDNYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY-GAK---VI 150 (329)
T ss_pred CcEEEEEeeeCceEEEEEEECCCCEEEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc-CCE---EE
Confidence 57999999999999999998877899999999999999999999999999999999999999999999998 577 99
Q ss_pred EcCC
Q psy17906 170 GLKM 173 (174)
Q Consensus 170 ~~~~ 173 (174)
++..
T Consensus 151 g~~~ 154 (329)
T PLN02398 151 GSAV 154 (329)
T ss_pred EehH
Confidence 9864
No 4
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.70 E-value=5.4e-17 Score=136.28 Aligned_cols=76 Identities=42% Similarity=0.715 Sum_probs=68.7
Q ss_pred EEEecccCCeeEEEEEECCCCeEEEEeCCChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcC
Q psy17906 93 VDLIPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 93 I~~ip~~~~Ny~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~ 172 (174)
|..+|++++||+|+|.+++ ++++|||||....+.+++++.+.++++|++||.|+||+||+..|++.++ ++ ||+++
T Consensus 1 v~~~~~~~dN~~yli~~~~-~~~ilID~g~~~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~-~~---V~~~~ 75 (248)
T TIGR03413 1 IIPIPALSDNYIWLLHDPD-GQAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFP-AP---VYGPA 75 (248)
T ss_pred CEEecccccEEEEEEEcCC-CCEEEEcCCChHHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCC-Ce---EEecc
Confidence 4678899999999999874 6899999998888999999999999999999999999999999999984 66 99986
Q ss_pred C
Q psy17906 173 M 173 (174)
Q Consensus 173 ~ 173 (174)
.
T Consensus 76 ~ 76 (248)
T TIGR03413 76 E 76 (248)
T ss_pred c
Confidence 4
No 5
>KOG0813|consensus
Probab=99.54 E-value=7.9e-15 Score=125.41 Aligned_cols=74 Identities=42% Similarity=0.752 Sum_probs=66.2
Q ss_pred ecccCCeeEEEEEE-CCCCeEEEEeCCChhHHHHHHHh---cCCCccEEEeCCCCcchhcCHHHHHHHCC-CCccccEEE
Q psy17906 96 IPALKDNYMYLVVD-KASKHAAAIDPVEPHKILDAVNS---HSAQLKHIWTTHHHQDHAGGNYDLVSRYP-HLKEHPVYG 170 (174)
Q Consensus 96 ip~~~~Ny~YLI~d-e~t~~aiLVDpG~~~~i~~~i~~---~g~~I~~VllTH~H~DHigGl~~L~~~~p-~~~~ipVy~ 170 (174)
.|++++||+||+.+ +.++.+.+|||+.++.+...+++ .+.++.+||+||+||||+||+..|.+.++ +++ +||
T Consensus 7 ~~~~~~Ny~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~~~~---v~g 83 (265)
T KOG0813|consen 7 LPTLQDNYMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPYDIK---VIG 83 (265)
T ss_pred ccccCCceEEEEecccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccCCcE---Eec
Confidence 67899999999999 77889999999999888888777 78899999999999999999999999865 566 999
Q ss_pred cC
Q psy17906 171 LK 172 (174)
Q Consensus 171 ~~ 172 (174)
++
T Consensus 84 ~~ 85 (265)
T KOG0813|consen 84 GA 85 (265)
T ss_pred CC
Confidence 84
No 6
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.54 E-value=3e-14 Score=120.74 Aligned_cols=79 Identities=29% Similarity=0.312 Sum_probs=67.8
Q ss_pred ceEEEEe--cccCCeeEEEEEEC--CCCeEEEEeCC--ChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCCC
Q psy17906 90 KYTVDLI--PALKDNYMYLVVDK--ASKHAAAIDPV--EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHL 163 (174)
Q Consensus 90 ~M~I~~i--p~~~~Ny~YLI~de--~t~~aiLVDpG--~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~~ 163 (174)
.|.++++ +...+| ||+|.++ .+++++||||+ +.+.+++.+++.+.+|++||+||.|+||++|+..|+++++++
T Consensus 10 ~m~~~~~~~~~~~~~-~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~a 88 (251)
T PLN02962 10 KLLFRQLFEKESSTY-TYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPGV 88 (251)
T ss_pred ceEEEEeecCCceeE-EEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCCC
Confidence 4777877 447767 9999986 25789999999 468888999999999999999999999999999999998777
Q ss_pred ccccEEEcC
Q psy17906 164 KEHPVYGLK 172 (174)
Q Consensus 164 ~~ipVy~~~ 172 (174)
+ +|+++
T Consensus 89 ~---v~~~~ 94 (251)
T PLN02962 89 K---SIISK 94 (251)
T ss_pred e---EEecc
Confidence 7 88764
No 7
>PRK00055 ribonuclease Z; Reviewed
Probab=99.25 E-value=2.5e-11 Score=100.40 Aligned_cols=79 Identities=19% Similarity=0.142 Sum_probs=57.6
Q ss_pred ceEEEEeccc--------CCeeEEEEEECCCCeEEEEeCCChhHHHHHHHhcCC---CccEEEeCCCCcchhcCHHHHHH
Q psy17906 90 KYTVDLIPAL--------KDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSA---QLKHIWTTHHHQDHAGGNYDLVS 158 (174)
Q Consensus 90 ~M~I~~ip~~--------~~Ny~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~---~I~~VllTH~H~DHigGl~~L~~ 158 (174)
||+|.++++. ..+ ||+|..+ +..+|||+|.+ ....+.+.++ ++++||+||.|+||++|++.|..
T Consensus 1 ~m~i~~LGsg~~~~~~~r~~~-~~li~~~--~~~iLiD~G~g--~~~~l~~~~~~~~~i~~i~lTH~H~DHi~Gl~~l~~ 75 (270)
T PRK00055 1 MMELTFLGTGSGVPTPTRNVS-SILLRLG--GELFLFDCGEG--TQRQLLKTGIKPRKIDKIFITHLHGDHIFGLPGLLS 75 (270)
T ss_pred CeEEEEEecCCCCCcCCCCCC-EEEEEEC--CcEEEEECCHH--HHHHHHHcCCCHHHCCEEEEeCCCchhhCcHHHHHH
Confidence 6888988752 255 8988764 57899999954 3334444444 58999999999999999998875
Q ss_pred HC---CCCccccEEEcCC
Q psy17906 159 RY---PHLKEHPVYGLKM 173 (174)
Q Consensus 159 ~~---p~~~~ipVy~~~~ 173 (174)
.+ ...++++||+++.
T Consensus 76 ~~~~~~~~~~l~iy~p~~ 93 (270)
T PRK00055 76 TRSLSGRTEPLTIYGPKG 93 (270)
T ss_pred HhhhcCCCceEEEECCcc
Confidence 43 1234577999864
No 8
>PRK02126 ribonuclease Z; Provisional
Probab=99.17 E-value=1.1e-10 Score=102.71 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=54.2
Q ss_pred ccCCeeEEEEEECCCCeEEEEeCCChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCC-CccccEEEcC
Q psy17906 98 ALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPH-LKEHPVYGLK 172 (174)
Q Consensus 98 ~~~~Ny~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~-~~~ipVy~~~ 172 (174)
.+++| ||++.++.+++.+|||||+ +.+.++....+|++||+||.|+||++|++.|+..+.+ .++++|||++
T Consensus 13 ~~~dn-~~~l~~~~~~~~iLiD~G~---~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~ 84 (334)
T PRK02126 13 PFDDP-GLYVDFLFERRALLFDLGD---LHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPP 84 (334)
T ss_pred CCCCc-EEEEEECCCCeEEEEcCCC---HHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECH
Confidence 48999 7777765567899999997 3333333335899999999999999999999876422 2346799985
No 9
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.14 E-value=6e-11 Score=90.12 Aligned_cols=59 Identities=25% Similarity=0.331 Sum_probs=46.1
Q ss_pred CCeeEEEEEECCCCeEEEEeCCChhHH-H----HHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCC
Q psy17906 100 KDNYMYLVVDKASKHAAAIDPVEPHKI-L----DAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYP 161 (174)
Q Consensus 100 ~~Ny~YLI~de~t~~aiLVDpG~~~~i-~----~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p 161 (174)
..| ||+|..+ ++.+|||||..... . ......+.+|++|++||.|+||+||+..|.++++
T Consensus 5 ~~n-~~li~~~--~~~iliD~G~~~~~~~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~ 68 (194)
T PF00753_consen 5 GSN-SYLIEGG--DGAILIDTGLDPDFAKELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGP 68 (194)
T ss_dssp EEE-EEEEEET--TEEEEESEBSSHHHHHHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTT
T ss_pred eEE-EEEEEEC--CEEEEEeCCCCchhhHHhhhhHhhccCCCeEEEEECcccccccccccccccccc
Confidence 458 9999865 79999999932211 1 2344456689999999999999999999999974
No 10
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.10 E-value=3.3e-10 Score=101.47 Aligned_cols=75 Identities=23% Similarity=0.352 Sum_probs=56.7
Q ss_pred EEEEecc---cCCeeEEEEEECCCCeEEEEeCCC--h-hHH---------HHHHHhcCCCccEEEeCCCCcchhcCHHHH
Q psy17906 92 TVDLIPA---LKDNYMYLVVDKASKHAAAIDPVE--P-HKI---------LDAVNSHSAQLKHIWTTHHHQDHAGGNYDL 156 (174)
Q Consensus 92 ~I~~ip~---~~~Ny~YLI~de~t~~aiLVDpG~--~-~~i---------~~~i~~~g~~I~~VllTH~H~DHigGl~~L 156 (174)
++..++. .+.| ||++..+ ++.+|||||. . ..+ .+++++...++++||+||.|.||++|++.|
T Consensus 2 ~i~~lGG~~eiG~n-~~ll~~~--~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l 78 (422)
T TIGR00649 2 KIFALGGLGEIGKN-MYVVEID--DDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYL 78 (422)
T ss_pred EEEEccCCCccCCe-EEEEEEC--CeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHH
Confidence 3445544 5789 9999764 6899999992 1 121 345666667899999999999999999999
Q ss_pred HHHCCCCccccEEEcC
Q psy17906 157 VSRYPHLKEHPVYGLK 172 (174)
Q Consensus 157 ~~~~p~~~~ipVy~~~ 172 (174)
.+.++..+ ||+++
T Consensus 79 ~~~~~~~~---Vy~~~ 91 (422)
T TIGR00649 79 FHTVGFPP---IYGTP 91 (422)
T ss_pred HHhCCCCe---EEeCH
Confidence 98774345 99985
No 11
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.10 E-value=3.1e-10 Score=87.12 Aligned_cols=68 Identities=29% Similarity=0.392 Sum_probs=52.7
Q ss_pred cCCeeEEEEEECCCCeEEEEeCC-C-hhHHHHHHHhcCC-CccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcCC
Q psy17906 99 LKDNYMYLVVDKASKHAAAIDPV-E-PHKILDAVNSHSA-QLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 99 ~~~Ny~YLI~de~t~~aiLVDpG-~-~~~i~~~i~~~g~-~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~~ 173 (174)
...| ||+|..+ ++.+||||| . ...+.+.+++.+. ++++|++||.|.||++|++.+.+. ++++ +|+++.
T Consensus 4 ~~~~-~~li~~~--~~~iliD~g~~~~~~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~-~~~~---i~~~~~ 74 (183)
T smart00849 4 VGVN-SYLVEGD--GGAILIDTGPGEAEDLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEA-PGAP---VYAPEG 74 (183)
T ss_pred ccee-EEEEEeC--CceEEEeCCCChhHHHHHHHHHcCchhhcEEEecccCcchhccHHHHHhC-CCCc---EEEchh
Confidence 3457 8999765 678999999 3 3345555666654 899999999999999999999887 4566 998754
No 12
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.06 E-value=3.1e-10 Score=101.03 Aligned_cols=67 Identities=24% Similarity=0.401 Sum_probs=54.6
Q ss_pred cCCeeEEEEEECCCCeEEEEeCCC---hhHHHHHHHhc-CC-CccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcC
Q psy17906 99 LKDNYMYLVVDKASKHAAAIDPVE---PHKILDAVNSH-SA-QLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 99 ~~~Ny~YLI~de~t~~aiLVDpG~---~~~i~~~i~~~-g~-~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~ 172 (174)
.+.| +|+|.+ ++.+|||||. .+.+.+.+++. +. +|++|++||.|.||+||++.|.+.+|+++ ||++.
T Consensus 31 ~~~N-syLI~~---~~~vLIDtg~~~~~~~~~~~l~~~~~~~~Id~IilTH~H~DHiggl~~l~~~~p~a~---V~~~~ 102 (394)
T PRK11921 31 SSYN-SYLIKD---EKTVLIDTVWQPFAKEFVENLKKEIDLDKIDYIVANHGEIDHSGALPELMKEIPDTP---IYCTK 102 (394)
T ss_pred eEEE-EEEEeC---CCEEEEeCCCCCcHHHHHHHHHhhcCcccCCEEEeCCCCCchhhHHHHHHHHCCCCE---EEECH
Confidence 5678 999975 3689999993 35666666653 33 79999999999999999999999988777 99875
No 13
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.04 E-value=5.3e-10 Score=95.43 Aligned_cols=67 Identities=22% Similarity=0.306 Sum_probs=55.7
Q ss_pred eeEEEEEECCCCeEEEEeCC-ChhHHHHHHHhcCC---CccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcC
Q psy17906 102 NYMYLVVDKASKHAAAIDPV-EPHKILDAVNSHSA---QLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 102 Ny~YLI~de~t~~aiLVDpG-~~~~i~~~i~~~g~---~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~ 172 (174)
-+++||.++ +..+|+|+| ++..++..++..|+ ++++|++||.||||+||+++|.+.. .+.+|||+++
T Consensus 22 GfS~LVE~~--~~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~--~~~i~v~ahp 92 (259)
T COG1237 22 GFSALVEDE--GTRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEEN--NPGIPVYAHP 92 (259)
T ss_pred ceEEEEEcC--CeEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhcc--CCCceEEeCh
Confidence 357888765 578999999 88889999999987 5899999999999999999998864 2235599975
No 14
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=98.96 E-value=2.1e-09 Score=91.04 Aligned_cols=68 Identities=19% Similarity=0.115 Sum_probs=49.4
Q ss_pred CeeEEEEEECCCCeEEEEeCCChhHHHHHHHhcCC---CccEEEeCCCCcchhcCHHHHHHHC---CCCccccEEEcCC
Q psy17906 101 DNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSA---QLKHIWTTHHHQDHAGGNYDLVSRY---PHLKEHPVYGLKM 173 (174)
Q Consensus 101 ~Ny~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~---~I~~VllTH~H~DHigGl~~L~~~~---p~~~~ipVy~~~~ 173 (174)
.+ |++|..+ +..+|||+|.+ +...+.+.++ ++++||+||.|+||++|++.+.... ...++++||++..
T Consensus 18 ~~-~~~v~~~--~~~iLiD~G~g--~~~~l~~~~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~ 91 (299)
T TIGR02651 18 LP-SIALKLN--GELWLFDCGEG--TQRQMLRSGISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPG 91 (299)
T ss_pred Cc-eEEEEEC--CeEEEEECCHH--HHHHHHHcCCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCcc
Confidence 45 7888764 57899999954 3344555544 5899999999999999999987642 1123577999863
No 15
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.96 E-value=3.1e-09 Score=84.88 Aligned_cols=65 Identities=31% Similarity=0.408 Sum_probs=51.4
Q ss_pred cCCeeEEEEEECCCCeEEEEeCC-C---hhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCCCc
Q psy17906 99 LKDNYMYLVVDKASKHAAAIDPV-E---PHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLK 164 (174)
Q Consensus 99 ~~~Ny~YLI~de~t~~aiLVDpG-~---~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~~~ 164 (174)
...|.+|++.++. +..+|||+| . ...+.+.+...+.+|++|++||.|+||+||+..+.+..+.++
T Consensus 22 ~~~~~~~~~~~~~-~~~~liD~G~~~~~~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~~~~ 90 (252)
T COG0491 22 LSGNSVYLLVDGE-GGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFGAAP 90 (252)
T ss_pred cccccEEEEEcCC-CceEEEeCCCCchHHHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcCCce
Confidence 5556467776542 479999999 2 467778888888899999999999999999999998774244
No 16
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.95 E-value=1.4e-09 Score=99.65 Aligned_cols=67 Identities=24% Similarity=0.448 Sum_probs=54.2
Q ss_pred cCCeeEEEEEECCCCeEEEEeCCC---hhHHHHHHHhc-C-CCccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcC
Q psy17906 99 LKDNYMYLVVDKASKHAAAIDPVE---PHKILDAVNSH-S-AQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 99 ~~~Ny~YLI~de~t~~aiLVDpG~---~~~i~~~i~~~-g-~~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~ 172 (174)
...| +|||.+ ++.+|||+|. .+.+++.+++. + .+|++|++||.|.||+||++.|++++|+++ ||+++
T Consensus 33 ~t~N-sYLI~~---~~~vLIDtg~~~~~~~~l~~l~~~~~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p~a~---V~~s~ 104 (479)
T PRK05452 33 SSYN-SYLIRE---EKNVLIDTVDHKFSREFVQNLRNEIDLADIDYIVINHAEEDHAGALTELMAQIPDTP---IYCTA 104 (479)
T ss_pred cEEE-EEEEEC---CCEEEEeCCCcccHHHHHHHHHhcCCHhhCCEEEeCCCCcchhchHHHHHHHCCCCE---EEECH
Confidence 5679 999975 3689999993 45566666542 3 379999999999999999999999988777 99875
No 17
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=98.93 E-value=2.7e-09 Score=92.26 Aligned_cols=65 Identities=15% Similarity=0.187 Sum_probs=45.8
Q ss_pred CeeEEEEEECCCCeEEEEeCCChhHHHHHHHhc-------CC---CccEEEeCCCCcchhcCHHHHHHHCCCCccccEEE
Q psy17906 101 DNYMYLVVDKASKHAAAIDPVEPHKILDAVNSH-------SA---QLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYG 170 (174)
Q Consensus 101 ~Ny~YLI~de~t~~aiLVDpG~~~~i~~~i~~~-------g~---~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~ 170 (174)
.+.+|+|.++ ++..+|||+|.. +..++.+. |+ +|++||+||.|+||+.|++.|+. ..++|||+
T Consensus 38 ~~ss~li~~~-g~~~iLiD~G~g--~~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~----~~~l~Vyg 110 (302)
T PRK05184 38 TQSSIAVSAD-GEDWVLLNASPD--IRQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLRE----GQPFPVYA 110 (302)
T ss_pred cccEEEEEcC-CCEEEEEECChh--HHHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhcc----CCCeEEEe
Confidence 3447888653 345799999933 22233332 22 59999999999999999998853 23477999
Q ss_pred cC
Q psy17906 171 LK 172 (174)
Q Consensus 171 ~~ 172 (174)
++
T Consensus 111 ~~ 112 (302)
T PRK05184 111 TP 112 (302)
T ss_pred CH
Confidence 85
No 18
>PRK02113 putative hydrolase; Provisional
Probab=98.92 E-value=4.7e-09 Score=87.17 Aligned_cols=66 Identities=24% Similarity=0.281 Sum_probs=46.8
Q ss_pred eeEEEEEECCCCeEEEEeCCChhHHHHHHHhcCC-CccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcC
Q psy17906 102 NYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSA-QLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 102 Ny~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~-~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~ 172 (174)
+.+|+|..+ +..+|||+|.+ +...+.+.+. ++++||+||.|+||++|++.+.... ..++++||+++
T Consensus 35 ~~s~li~~~--~~~iLiD~G~g--~~~~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~-~~~~~~i~~~~ 101 (252)
T PRK02113 35 RTSALVETE--GARILIDCGPD--FREQMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFC-RFGEVPIYAEQ 101 (252)
T ss_pred eeEEEEEEC--CeEEEEECCch--HHHHHHhcCccccCEEEECCCChhhhCCHHHHHHhc-cCCCceEEECH
Confidence 447888654 57899999943 1122222333 7999999999999999999886543 23457799985
No 19
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=98.89 E-value=5.8e-09 Score=89.41 Aligned_cols=68 Identities=19% Similarity=0.179 Sum_probs=47.5
Q ss_pred EEEEEECC--CCeEEEEeCCChhHHHHHHHhcCC---CccEEEeCCCCcchhcCHHHHHHH--CC-CCccccEEEcCC
Q psy17906 104 MYLVVDKA--SKHAAAIDPVEPHKILDAVNSHSA---QLKHIWTTHHHQDHAGGNYDLVSR--YP-HLKEHPVYGLKM 173 (174)
Q Consensus 104 ~YLI~de~--t~~aiLVDpG~~~~i~~~i~~~g~---~I~~VllTH~H~DHigGl~~L~~~--~p-~~~~ipVy~~~~ 173 (174)
||+|.... .+..+|||||.+ ....+.+.++ +|++||+||.|+||++|++.|... +. ..++++|||++.
T Consensus 19 ~~lv~~~~~~~~~~iLiD~G~g--~~~~l~~~~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~ 94 (303)
T TIGR02649 19 AILLNLQHPTQSGLWLFDCGEG--TQHQLLHTAFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQG 94 (303)
T ss_pred EEEEEccCCCCCCEEEEECCcc--HHHHHHHhCCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechh
Confidence 77775321 136899999954 2334444443 689999999999999999987643 11 234577999863
No 20
>PRK11539 ComEC family competence protein; Provisional
Probab=98.87 E-value=1.1e-08 Score=98.18 Aligned_cols=77 Identities=19% Similarity=0.245 Sum_probs=65.1
Q ss_pred cceEEEEecccCCeeEEEEEECCCCeEEEEeCCC--------hhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHC
Q psy17906 89 GKYTVDLIPALKDNYMYLVVDKASKHAAAIDPVE--------PHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRY 160 (174)
Q Consensus 89 ~~M~I~~ip~~~~Ny~YLI~de~t~~aiLVDpG~--------~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~ 160 (174)
..+++..+..-++. +.+|.+ .+++++||+|. .+.+..+++..|+++|++++||.|.||+||++.+.+.+
T Consensus 499 ~~~~v~~lDVGqG~-a~li~~--~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~ 575 (755)
T PRK11539 499 YEWRVDMLDVGHGL-AVVIER--NGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAW 575 (755)
T ss_pred CcEEEEEEEccCce-EEEEEE--CCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhC
Confidence 34788888888888 777765 47899999993 24567889999999999999999999999999999999
Q ss_pred CCCccccEEEc
Q psy17906 161 PHLKEHPVYGL 171 (174)
Q Consensus 161 p~~~~ipVy~~ 171 (174)
|..+ +|.+
T Consensus 576 ~~~~---i~~~ 583 (755)
T PRK11539 576 PMAW---IRSP 583 (755)
T ss_pred Ccce---eecc
Confidence 7776 8875
No 21
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=98.86 E-value=1.3e-08 Score=96.50 Aligned_cols=77 Identities=19% Similarity=0.293 Sum_probs=64.3
Q ss_pred ceEEEEecccCCeeEEEEEECCCCeEEEEeCCCh--------hHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCC
Q psy17906 90 KYTVDLIPALKDNYMYLVVDKASKHAAAIDPVEP--------HKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYP 161 (174)
Q Consensus 90 ~M~I~~ip~~~~Ny~YLI~de~t~~aiLVDpG~~--------~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p 161 (174)
..+++.+..-++. +.+|..+ ++.++||+|.. ..+..++++.|+++|++++||.|.||+||+..+.+.++
T Consensus 439 ~~~v~~lDVGqGd-aili~~~--~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~ 515 (662)
T TIGR00361 439 SWQVDMLDVGQGL-AMFIGAN--GKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHP 515 (662)
T ss_pred CEEEEEEecCCce-EEEEEEC--CeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCC
Confidence 3678888888888 8888764 58999999932 34788999999999999999999999999999999986
Q ss_pred CCccccEEEcC
Q psy17906 162 HLKEHPVYGLK 172 (174)
Q Consensus 162 ~~~~ipVy~~~ 172 (174)
-.+ +|.++
T Consensus 516 v~~---i~~~~ 523 (662)
T TIGR00361 516 VKR---LVIPK 523 (662)
T ss_pred ccE---EEecc
Confidence 555 77653
No 22
>KOG0814|consensus
Probab=98.80 E-value=4.7e-09 Score=86.11 Aligned_cols=66 Identities=29% Similarity=0.352 Sum_probs=59.6
Q ss_pred cCCeeEEEEEECCCCeEEEEeCC--ChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCCCc
Q psy17906 99 LKDNYMYLVVDKASKHAAAIDPV--EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLK 164 (174)
Q Consensus 99 ~~~Ny~YLI~de~t~~aiLVDpG--~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~~~ 164 (174)
-+..|.|++.|..+++++||||. ...+-.+.+++.|+++.|.+.||.|.||+.|...|+..+|+++
T Consensus 18 ~SsTytYll~d~~~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~pg~k 85 (237)
T KOG0814|consen 18 ESSTYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLPGCK 85 (237)
T ss_pred ccceEEEEeeeCCCCceEEecchhhcccchHHHHHhcCceeeeeecceeecccccccchHHHhcccHH
Confidence 34578999999888999999999 5667778899999999999999999999999999999998876
No 23
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=98.78 E-value=1.1e-08 Score=96.75 Aligned_cols=78 Identities=17% Similarity=0.066 Sum_probs=56.0
Q ss_pred cceEEEEecc---cCCeeEEEEEECCCCeEEEEeCCC--hh---HHHHHHHhc---CCCccEEEeCCCCcchhcCHHHHH
Q psy17906 89 GKYTVDLIPA---LKDNYMYLVVDKASKHAAAIDPVE--PH---KILDAVNSH---SAQLKHIWTTHHHQDHAGGNYDLV 157 (174)
Q Consensus 89 ~~M~I~~ip~---~~~Ny~YLI~de~t~~aiLVDpG~--~~---~i~~~i~~~---g~~I~~VllTH~H~DHigGl~~L~ 157 (174)
..|++..+++ .+.| ||+|..+ +..+|||||. .. .....+... ..++++||+||.|.||+||++.|.
T Consensus 173 ~~m~i~~LGg~~eVG~S-c~Ll~~~--~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~ 249 (630)
T TIGR03675 173 RWVRVTALGGFREVGRS-ALLLSTP--ESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLF 249 (630)
T ss_pred CeEEEEEEecCCccCCC-EEEEEEC--CCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHH
Confidence 3689999986 6678 9999875 5689999992 21 111111111 126899999999999999999998
Q ss_pred HHCCCCccccEEEcC
Q psy17906 158 SRYPHLKEHPVYGLK 172 (174)
Q Consensus 158 ~~~p~~~~ipVy~~~ 172 (174)
+...+.+ ||++.
T Consensus 250 k~g~~gp---IY~T~ 261 (630)
T TIGR03675 250 KYGYDGP---VYCTP 261 (630)
T ss_pred HhCCCCc---eeecH
Confidence 7533455 99875
No 24
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=98.77 E-value=2.7e-08 Score=82.84 Aligned_cols=64 Identities=27% Similarity=0.295 Sum_probs=44.7
Q ss_pred eEEEEEECCCCeEEEEeCCChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcCC
Q psy17906 103 YMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 103 y~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~~ 173 (174)
.+|+|..+ +..+|||||... +.+.+ ...++++||+||.|.||++|+..+.... .++++||++..
T Consensus 38 ~s~li~~~--~~~iLiD~G~~~-~~~~~--~~~~i~~i~iTH~H~DHi~gl~~l~~~~--~~~i~i~~~~~ 101 (250)
T PRK11244 38 CSALIEFN--GARTLIDAGLPD-LAERF--PPGSLQQILLTHYHMDHVQGLFPLRWGV--GDPIPVYGPPD 101 (250)
T ss_pred eEEEEEEC--CCEEEEECCChH-HhhcC--CcccCCEEEEccCchhhhccHHHHHhhc--CCceeEEeCCc
Confidence 36777654 468999999432 22211 1247999999999999999998885432 23477999863
No 25
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=98.76 E-value=3.1e-08 Score=85.62 Aligned_cols=79 Identities=18% Similarity=0.168 Sum_probs=53.4
Q ss_pred ceEEEEeccc------CCee-EEEEEECCCCeEEEEeCCChhHHHHHHHhcCC---CccEEEeCCCCcchhcCHHHHHHH
Q psy17906 90 KYTVDLIPAL------KDNY-MYLVVDKASKHAAAIDPVEPHKILDAVNSHSA---QLKHIWTTHHHQDHAGGNYDLVSR 159 (174)
Q Consensus 90 ~M~I~~ip~~------~~Ny-~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~---~I~~VllTH~H~DHigGl~~L~~~ 159 (174)
+|++.++++. ..|. .++|.. .++.+++|||++ .+..+...+. ++++|++||.|.||+.|++.|...
T Consensus 1 ~m~i~fLGtg~~~Pt~~r~~~s~ll~~--~~~~~L~DcGeG--t~~~l~~~~~~~~~i~~IfITH~H~DHi~gL~~ll~~ 76 (292)
T COG1234 1 MMEITFLGTGGAVPTKDRNVSSILLRL--EGEKFLFDCGEG--TQHQLLRAGLPPRKIDAIFITHLHGDHIAGLPGLLVS 76 (292)
T ss_pred CcEEEEEecCCCCCcCccccceeEEEe--CCeeEEEECCHh--HHHHHHHhcCChhhccEEEeeccccchhcCcHHHHHH
Confidence 4777777641 1232 455654 357888999955 3444555544 689999999999999999987654
Q ss_pred C---CCCccccEEEcC
Q psy17906 160 Y---PHLKEHPVYGLK 172 (174)
Q Consensus 160 ~---p~~~~ipVy~~~ 172 (174)
. +..+++.||+|.
T Consensus 77 ~~~~~~~~~l~iygP~ 92 (292)
T COG1234 77 RSFRGRREPLKIYGPP 92 (292)
T ss_pred hhccCCCCceeEECCc
Confidence 2 223346699984
No 26
>PRK04286 hypothetical protein; Provisional
Probab=98.72 E-value=1.6e-08 Score=87.40 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=44.6
Q ss_pred eEEEEecc----cCCeeEEEEEECCCCeEEEEeCCCh---------------hHHHHHHHh---cCCCccEEEeCCCCcc
Q psy17906 91 YTVDLIPA----LKDNYMYLVVDKASKHAAAIDPVEP---------------HKILDAVNS---HSAQLKHIWTTHHHQD 148 (174)
Q Consensus 91 M~I~~ip~----~~~Ny~YLI~de~t~~aiLVDpG~~---------------~~i~~~i~~---~g~~I~~VllTH~H~D 148 (174)
|++.++.+ .+.| |++|..+ +..+|||||.. ..+.+...+ .-.++++||+||.|+|
T Consensus 1 m~~~~l~s~s~g~~~~-~~~I~~~--~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~D 77 (298)
T PRK04286 1 MKIIPLASESLGVRSM-ATFVETK--DVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYD 77 (298)
T ss_pred CEEEEEEeCCCCceee-EEEEEEC--CeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccc
Confidence 56777765 3448 8888765 68999999922 223333322 2237999999999999
Q ss_pred hhcCHHHH
Q psy17906 149 HAGGNYDL 156 (174)
Q Consensus 149 HigGl~~L 156 (174)
|++|...+
T Consensus 78 Hi~g~~~~ 85 (298)
T PRK04286 78 HHTPFYED 85 (298)
T ss_pred cCCCcccc
Confidence 99988765
No 27
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=98.72 E-value=2.1e-08 Score=87.05 Aligned_cols=66 Identities=12% Similarity=0.136 Sum_probs=46.6
Q ss_pred eeEEEEEECCCCeEEEEeCC-ChhHHHHHHHhc----CC---CccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcC
Q psy17906 102 NYMYLVVDKASKHAAAIDPV-EPHKILDAVNSH----SA---QLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 102 Ny~YLI~de~t~~aiLVDpG-~~~~i~~~i~~~----g~---~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~ 172 (174)
+.+++|.+. ++..+|||+| +....+....+. |+ +|++||+||.|.||+.|+..|++.. ++|||+++
T Consensus 38 rss~ll~~~-g~~~iLID~Gpd~r~ql~~~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~----~lpVya~~ 111 (302)
T TIGR02108 38 QSSIAVSAD-GERWVLLNASPDIRQQIQATPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQ----PFTLYATE 111 (302)
T ss_pred ccEEEEEeC-CCEEEEEECCHHHHHHHHhCcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCC----CceEEECH
Confidence 446777543 4578999999 443333333222 33 6899999999999999999997533 46799985
No 28
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=98.69 E-value=3.3e-08 Score=92.50 Aligned_cols=78 Identities=21% Similarity=0.293 Sum_probs=60.4
Q ss_pred cceEEEEecc---cCCeeEEEEEECCCCeEEEEeCC---ChhH---------HHHHHHhcCCCccEEEeCCCCcchhcCH
Q psy17906 89 GKYTVDLIPA---LKDNYMYLVVDKASKHAAAIDPV---EPHK---------ILDAVNSHSAQLKHIWTTHHHQDHAGGN 153 (174)
Q Consensus 89 ~~M~I~~ip~---~~~Ny~YLI~de~t~~aiLVDpG---~~~~---------i~~~i~~~g~~I~~VllTH~H~DHigGl 153 (174)
..+++..++. .+.| ||++.-+ ++.+++|+| ..+. -..++.++..+++++|+||+|-||+||+
T Consensus 7 ~~i~i~~lGG~~EiGkN-~~vve~~--~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGai 83 (555)
T COG0595 7 AKIKIFALGGVGEIGKN-MYVVEYG--DDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGAL 83 (555)
T ss_pred CceEEEEecChhhhccc-eEEEEEC--CcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccch
Confidence 3466666664 6789 8988765 589999999 1111 1355777777999999999999999999
Q ss_pred HHHHHHCCCCccccEEEcC
Q psy17906 154 YDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 154 ~~L~~~~p~~~~ipVy~~~ 172 (174)
++|....+.++ ||++.
T Consensus 84 p~ll~~~~~~p---iy~s~ 99 (555)
T COG0595 84 PYLLKQVLFAP---IYASP 99 (555)
T ss_pred HHHHhcCCcCc---eecCH
Confidence 99999875466 99874
No 29
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=98.62 E-value=8.5e-08 Score=79.23 Aligned_cols=63 Identities=24% Similarity=0.244 Sum_probs=44.1
Q ss_pred EEEEEECCCCeEEEEeCCChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcCC
Q psy17906 104 MYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 104 ~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~~ 173 (174)
+++|..+ +..+|||+|... +.+.+ ...++++||+||.|+||++|+..+.... .++++||+++.
T Consensus 29 s~~i~~~--~~~iliD~G~~~-~~~~~--~~~~id~i~iTH~H~DHi~gl~~l~~~~--~~~~~v~~~~~ 91 (238)
T TIGR03307 29 SAVIEFN--GARTLIDAGLTD-LAERF--PPGSLQAILLTHYHMDHVQGLFPLRWGV--GEPIPVYGPPD 91 (238)
T ss_pred EEEEEEC--CcEEEEECCChh-Hhhcc--CccCCCEEEEecCchhhhcchHHHHHhc--CCceeEEeCch
Confidence 6777654 578999999432 22221 1237899999999999999998876543 23467999863
No 30
>PRK00685 metal-dependent hydrolase; Provisional
Probab=98.59 E-value=6.5e-08 Score=78.66 Aligned_cols=71 Identities=18% Similarity=0.321 Sum_probs=48.0
Q ss_pred eEEEEecccCCeeEEEEEECCCCeEEEEeCC-ChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCCCccccEE
Q psy17906 91 YTVDLIPALKDNYMYLVVDKASKHAAAIDPV-EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVY 169 (174)
Q Consensus 91 M~I~~ip~~~~Ny~YLI~de~t~~aiLVDpG-~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy 169 (174)
|+++.++ .+ ||+|..+ +..+||||+ ...... .++....++++|++||.|.||++|...+.... +.+ +|
T Consensus 1 m~i~~lG---~s-~~li~~~--~~~iLiDP~~~~~~~~-~~~~~~~~id~vliTH~H~DH~~~~~~~~~~~-~~~---v~ 69 (228)
T PRK00685 1 MKITWLG---HS-AFLIETG--GKKILIDPFITGNPLA-DLKPEDVKVDYILLTHGHGDHLGDTVEIAKRT-GAT---VI 69 (228)
T ss_pred CEEEEEc---ce-EEEEEEC--CEEEEECCCCCCCCCC-CCChhcCcccEEEeCCCCccccccHHHHHHhC-CCE---EE
Confidence 5666554 45 8999764 689999986 111110 11122348999999999999999998876543 444 88
Q ss_pred EcC
Q psy17906 170 GLK 172 (174)
Q Consensus 170 ~~~ 172 (174)
++.
T Consensus 70 ~~~ 72 (228)
T PRK00685 70 ANA 72 (228)
T ss_pred EeH
Confidence 764
No 31
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=98.42 E-value=4.7e-07 Score=81.47 Aligned_cols=67 Identities=27% Similarity=0.379 Sum_probs=55.4
Q ss_pred cCCeeEEEEEECCCCeEEEEeCCC---hhHHHHHHHhc-C-CCccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcC
Q psy17906 99 LKDNYMYLVVDKASKHAAAIDPVE---PHKILDAVNSH-S-AQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 99 ~~~Ny~YLI~de~t~~aiLVDpG~---~~~i~~~i~~~-g-~~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~ 172 (174)
.+.| +|||.+ ++.+||||+. .+.+++.+++. + .+|+||+++|..+||+|+++.+++.+|+++ |+++.
T Consensus 34 ttyN-SYLI~~---~k~aLID~~~~~~~~~~l~~l~~~id~k~iDYIi~~H~ePDhsg~l~~ll~~~p~a~---ii~s~ 105 (388)
T COG0426 34 TTYN-SYLIVG---DKTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLELAPNAK---IICSK 105 (388)
T ss_pred ceee-eEEEeC---CcEEEECCCCcchHHHHHHHHHhhcChhcCeEEEECCCCcchhhhHHHHHHhCCCCE---EEeeH
Confidence 6789 999984 4799999993 45556666554 2 259999999999999999999999999888 99875
No 32
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.34 E-value=1.9e-06 Score=75.10 Aligned_cols=66 Identities=18% Similarity=0.255 Sum_probs=53.1
Q ss_pred EEEEecccCCeeEEEEEECCCCeEEEEeCCC---hhHHHHHHHhcCCC-ccEEEeCCCCcchhcCHHHHHHHC
Q psy17906 92 TVDLIPALKDNYMYLVVDKASKHAAAIDPVE---PHKILDAVNSHSAQ-LKHIWTTHHHQDHAGGNYDLVSRY 160 (174)
Q Consensus 92 ~I~~ip~~~~Ny~YLI~de~t~~aiLVDpG~---~~~i~~~i~~~g~~-I~~VllTH~H~DHigGl~~L~~~~ 160 (174)
++..|..-++- ..++..+ +...++|+|. ...++.+++++|++ ||++++||.|.||+||+..+.+.+
T Consensus 45 ~~~~lDvGqg~-a~li~~~--~~~~l~dtg~~~~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~ 114 (293)
T COG2333 45 KVHMLDVGQGL-ATLIRSE--GKTILYDTGNSMGQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTI 114 (293)
T ss_pred eEEEEEcCCCe-EEEEeeC--CceEEeecCcccCceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhC
Confidence 44555555554 6666655 3589999993 56688999999996 999999999999999999999966
No 33
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=98.32 E-value=2.9e-07 Score=72.15 Aligned_cols=57 Identities=21% Similarity=0.402 Sum_probs=36.6
Q ss_pred EEEEeCCChhH---HHHHHHhcCC---CccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcC
Q psy17906 115 AAAIDPVEPHK---ILDAVNSHSA---QLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 115 aiLVDpG~~~~---i~~~i~~~g~---~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~ 172 (174)
.+|||||.... +.+++..... ++++|++||.|.||+.|+..|......... +||+++
T Consensus 2 ~iLiD~g~~~~~~~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~-~i~~~~ 64 (194)
T PF12706_consen 2 RILIDCGPGTRSLRLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPK-PIYGPP 64 (194)
T ss_dssp EEEESE-TTHHHHTHCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT-EEEECH
T ss_pred EEEEeCCCCcccccccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccc-eEEecH
Confidence 58999994332 3333433222 899999999999999998887765422211 488874
No 34
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.20 E-value=1.9e-06 Score=72.99 Aligned_cols=44 Identities=32% Similarity=0.350 Sum_probs=31.5
Q ss_pred EEEEeCCChhHHHHHHHhcC-CCccEEEeCCCCcchhcCHHHHHHHC
Q psy17906 115 AAAIDPVEPHKILDAVNSHS-AQLKHIWTTHHHQDHAGGNYDLVSRY 160 (174)
Q Consensus 115 aiLVDpG~~~~i~~~i~~~g-~~I~~VllTH~H~DHigGl~~L~~~~ 160 (174)
.+++|+|.. +.....+.+ ..+++||+||.|+||+.|++.|++.+
T Consensus 42 ~~lid~g~~--~~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~ 86 (269)
T COG1235 42 TLLIDAGPD--LRDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAY 86 (269)
T ss_pred eEEEecChh--HHhhhhcccccccCeEEEecccHHhhcChHHHHHHh
Confidence 567777722 111122222 36999999999999999999999976
No 35
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.02 E-value=5.5e-06 Score=71.73 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=41.5
Q ss_pred EEEEEECCCCeEEEEe-CCChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHC----CCCccccEEEcCC
Q psy17906 104 MYLVVDKASKHAAAID-PVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRY----PHLKEHPVYGLKM 173 (174)
Q Consensus 104 ~YLI~de~t~~aiLVD-pG~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~----p~~~~ipVy~~~~ 173 (174)
+|++..+ ..+++| +|++ +...+-+.-..++++|+||+|.||++|++.+.-.. ...++..||+|+.
T Consensus 12 t~~~~~~---~~ilfD~ag~g--~~~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g 81 (277)
T TIGR02650 12 STIIYSP---EEIIFDAAEEG--SSTLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKE 81 (277)
T ss_pred EEEEECc---hhheehhhccc--chhHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcc
Confidence 3444443 679999 7743 11222222236889999999999999997665421 2344456999864
No 36
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=97.98 E-value=1.2e-05 Score=74.73 Aligned_cols=80 Identities=18% Similarity=0.076 Sum_probs=54.4
Q ss_pred ccceEEEEecc---cCCeeEEEEEECCCCeEEEEeCC-C--h--hHHHHHHH---hcCCCccEEEeCCCCcchhcCHHHH
Q psy17906 88 FGKYTVDLIPA---LKDNYMYLVVDKASKHAAAIDPV-E--P--HKILDAVN---SHSAQLKHIWTTHHHQDHAGGNYDL 156 (174)
Q Consensus 88 ~~~M~I~~ip~---~~~Ny~YLI~de~t~~aiLVDpG-~--~--~~i~~~i~---~~g~~I~~VllTH~H~DHigGl~~L 156 (174)
.....+..+++ .+.. |+++..+ ...+|+||| . . ....-++. -.-..+|+|++||+|.||+|-++.|
T Consensus 178 ~~wvRvt~LGg~~EVGRS-a~lv~T~--eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~~~~lDAViiTHAHLDH~G~lP~L 254 (637)
T COG1782 178 DRWVRVTALGGFREVGRS-ALLVSTP--ESRVLLDCGVNVAGNGEDAFPYLDVPEFQPDELDAVIITHAHLDHCGFLPLL 254 (637)
T ss_pred CceEEEEeeccchhccce-eEEEecC--CceEEEeccccCCCCccccCcccccccccccccceEEEeecccccccchhhh
Confidence 34577888876 5566 7888654 467999999 1 1 11111111 1112699999999999999999999
Q ss_pred HHHCCCCccccEEEcCC
Q psy17906 157 VSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 157 ~~~~p~~~~ipVy~~~~ 173 (174)
.+.-=+.+ ||+.+.
T Consensus 255 fkYgy~GP---VY~T~P 268 (637)
T COG1782 255 FKYGYDGP---VYCTPP 268 (637)
T ss_pred hhcCCCCC---eeeCCC
Confidence 87521345 999764
No 37
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=97.81 E-value=3.9e-05 Score=69.73 Aligned_cols=68 Identities=19% Similarity=0.127 Sum_probs=45.2
Q ss_pred cCCeeEEEEEECCCCeEEEEeCCC-h-hH--HHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcCC
Q psy17906 99 LKDNYMYLVVDKASKHAAAIDPVE-P-HK--ILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 99 ~~~Ny~YLI~de~t~~aiLVDpG~-~-~~--i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~~ 173 (174)
...- |.++... +..+++|||. + .. ..-...... ++|++++||.|.||+|+++.+....-..+ ||++..
T Consensus 12 vg~s-~~~l~~~--~~~il~D~G~~~~~~~~~~p~~~~~~-~vDavllTHaHlDH~g~lp~l~~~~~~~~---v~aT~~ 83 (427)
T COG1236 12 VGRS-CVLLETG--GTRILLDCGLFPGDPSPERPLLPPFP-KVDAVLLTHAHLDHIGALPYLVRNGFEGP---VYATPP 83 (427)
T ss_pred cCcE-EEEEEEC--CceEEEECCCCcCcCCccCCCCCCCC-CcCEEEeccCchhhhcccHHHHHhccCCc---eeeccC
Confidence 3444 7888764 5899999992 1 11 111111111 58999999999999999999988532344 888753
No 38
>KOG1136|consensus
Probab=97.44 E-value=0.00018 Score=64.54 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=51.7
Q ss_pred eEEEEecc---cCCeeEEEEEECCCCeEEEEeCC------ChhHH--HHHHHhcCC---CccEEEeCCCCcchhcCHHHH
Q psy17906 91 YTVDLIPA---LKDNYMYLVVDKASKHAAAIDPV------EPHKI--LDAVNSHSA---QLKHIWTTHHHQDHAGGNYDL 156 (174)
Q Consensus 91 M~I~~ip~---~~~Ny~YLI~de~t~~aiLVDpG------~~~~i--~~~i~~~g~---~I~~VllTH~H~DHigGl~~L 156 (174)
|++.++++ .+.. |.+|.- ++..+.+||| +..+. ..++.+.|. -|+.|++||.|.||.|+++++
T Consensus 4 i~v~pLGAGQdvGrS-Cilvsi--~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyf 80 (501)
T KOG1136|consen 4 IKVTPLGAGQDVGRS-CILVSI--GGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYF 80 (501)
T ss_pred ceEEeccCCcccCce-EEEEEE--CCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccch
Confidence 55566655 5566 677665 3689999999 22221 234444443 489999999999999999999
Q ss_pred HHHCC-CCccccEEEc
Q psy17906 157 VSRYP-HLKEHPVYGL 171 (174)
Q Consensus 157 ~~~~p-~~~~ipVy~~ 171 (174)
.+... +.+ ||.+
T Consensus 81 sEv~GY~GP---IYMt 93 (501)
T KOG1136|consen 81 SEVVGYDGP---IYMT 93 (501)
T ss_pred HhhhCCCCc---eEEe
Confidence 98741 344 8875
No 39
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=97.24 E-value=0.00026 Score=55.07 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=29.7
Q ss_pred cCCeeEEEEEECCCCeEEEEeCCChhHHHHHHHhcCCCccEEEeCCCCcchhcC
Q psy17906 99 LKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGG 152 (174)
Q Consensus 99 ~~~Ny~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~~I~~VllTH~H~DHigG 152 (174)
++.+ ||+|..+ +..+++||.... ........++++|++||.|.||...
T Consensus 5 lgha-~~~ie~~--g~~iliDP~~~~---~~~~~~~~~~D~IlisH~H~DH~~~ 52 (163)
T PF13483_consen 5 LGHA-SFLIETG--GKRILIDPWFSS---VGYAPPPPKADAILISHSHPDHFDP 52 (163)
T ss_dssp EETT-EEEEEET--TEEEEES--TTT-----T-TSS-B-SEEEESSSSTTT-CC
T ss_pred EEee-EEEEEEC--CEEEEECCCCCc---cCcccccCCCCEEEECCCccccCCh
Confidence 3456 8999874 789999999321 0111123579999999999999966
No 40
>KOG1135|consensus
Probab=97.21 E-value=0.00071 Score=64.78 Aligned_cols=68 Identities=19% Similarity=0.182 Sum_probs=51.6
Q ss_pred CeeEEEEEECCCCeEEEEeCCChh----HHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcC
Q psy17906 101 DNYMYLVVDKASKHAAAIDPVEPH----KILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 101 ~Ny~YLI~de~t~~aiLVDpG~~~----~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~ 172 (174)
.-+||++.-+ +-.++||||..+ .+...++..-..|++|++||...-|+||+++....+ +.. .|||++-
T Consensus 14 ~~~cyllqiD--~~~iLiDcGwd~~f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~-gl~-~~VYAT~ 85 (764)
T KOG1135|consen 14 GPLCYLLQID--GVRILIDCGWDESFDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKL-GLN-APVYATL 85 (764)
T ss_pred CcceEEEEEc--CeEEEEeCCCcchhccchhhhhhcccccccEEEecCCChHHhccchhhHhhC-Ccc-ceEEEec
Confidence 3468999775 678999999332 234445555558999999999999999999998876 444 5599863
No 41
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=97.17 E-value=0.0012 Score=55.32 Aligned_cols=66 Identities=18% Similarity=0.225 Sum_probs=42.7
Q ss_pred ccceEEEEecccCCeeEEEEEECCCCeEEEEeCC-ChhHHHHH-----HHhcCCCccEEEeCCCCcchhcCHHHHHHH
Q psy17906 88 FGKYTVDLIPALKDNYMYLVVDKASKHAAAIDPV-EPHKILDA-----VNSHSAQLKHIWTTHHHQDHAGGNYDLVSR 159 (174)
Q Consensus 88 ~~~M~I~~ip~~~~Ny~YLI~de~t~~aiLVDpG-~~~~i~~~-----i~~~g~~I~~VllTH~H~DHigGl~~L~~~ 159 (174)
..+|+|+-++ .+ |++|... +..+++||. ....-... ....-.++++|++||.|.||++..-.....
T Consensus 4 ~~~m~itwlG---ha-~~lie~~--~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~ 75 (258)
T COG2220 4 AEDMKITWLG---HA-AFLIETG--GKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALR 75 (258)
T ss_pred CcCceEEEec---ce-EEEEEEC--CEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHh
Confidence 3568888664 34 8888764 578999999 21111000 011123689999999999999766544444
No 42
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.11 E-value=0.00051 Score=63.97 Aligned_cols=68 Identities=28% Similarity=0.355 Sum_probs=45.5
Q ss_pred CeeEEEEEECCCCeEEEEeCC-Ch---hHHHHHHHh-cC-CCccEEEeCCCCcchhcCHHHHHHHC--CCCccccEEEcC
Q psy17906 101 DNYMYLVVDKASKHAAAIDPV-EP---HKILDAVNS-HS-AQLKHIWTTHHHQDHAGGNYDLVSRY--PHLKEHPVYGLK 172 (174)
Q Consensus 101 ~Ny~YLI~de~t~~aiLVDpG-~~---~~i~~~i~~-~g-~~I~~VllTH~H~DHigGl~~L~~~~--p~~~~ipVy~~~ 172 (174)
.| +-.|..+ ..+|||||- .+ ..-++...+ .| .++.+|+.||.|.||.||+..+.+.. ...+ +||++|.
T Consensus 126 sN-ITfveGd--tg~IViDpL~t~~tA~aAldl~~~~~g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGk-V~iiAP~ 201 (655)
T COG2015 126 SN-ITFVEGD--TGWIVIDPLVTPETAKAALDLYNQHRGQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGK-VQIIAPA 201 (655)
T ss_pred cc-eEEEcCC--cceEEEcccCCcHHHHHHHHHHHHhcCCCCeEEEEeecccccccCCeeeccCHHHcccCc-eeEecch
Confidence 37 5555543 479999998 22 223333333 34 47899999999999999999887642 1233 5588875
No 43
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=96.93 E-value=0.0026 Score=52.57 Aligned_cols=66 Identities=21% Similarity=0.183 Sum_probs=40.9
Q ss_pred cCCeeEEEEEECCCCeEEEEeCC-ChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcCCC
Q psy17906 99 LKDNYMYLVVDKASKHAAAIDPV-EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLKMD 174 (174)
Q Consensus 99 ~~~Ny~YLI~de~t~~aiLVDpG-~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~~d 174 (174)
+.-| +|++.-+ +..++|||. -.....+.+++.| .+++|++|| .||+......++.| +++ ||++..|
T Consensus 21 ~dfn-g~~~~~p--~GnilIDP~~ls~~~~~~l~a~g-gv~~IvLTn--~dHvR~A~~ya~~~-~a~---i~~p~~d 87 (199)
T PF14597_consen 21 LDFN-GHAWRRP--EGNILIDPPPLSAHDWKHLDALG-GVAWIVLTN--RDHVRAAEDYAEQT-GAK---IYGPAAD 87 (199)
T ss_dssp EEEE-EEEE--T--T--EEES-----HHHHHHHHHTT---SEEE-SS--GGG-TTHHHHHHHS---E---EEEEGGG
T ss_pred cCce-eEEEEcC--CCCEEecCccccHHHHHHHHhcC-CceEEEEeC--ChhHhHHHHHHHHh-CCe---eeccHHH
Confidence 4457 6766655 478999999 3444566677664 688999995 79999999999999 799 9999764
No 44
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=96.91 E-value=0.001 Score=59.40 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=23.3
Q ss_pred CccEEEeCCCCcchhc--CHHHHHHHCCCCccccEEEcC
Q psy17906 136 QLKHIWTTHHHQDHAG--GNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 136 ~I~~VllTH~H~DHig--Gl~~L~~~~p~~~~ipVy~~~ 172 (174)
++++||+||.|.||+. .+..+.+..+ ++++++++.
T Consensus 109 ~IDaVLiTH~H~DHlD~~tl~~l~~~~~--~~~~~v~p~ 145 (355)
T PRK11709 109 EIDAVLATHDHSDHIDVNVAAAVLQNCA--DHVKFIGPQ 145 (355)
T ss_pred CCCEEEECCCcccccChHHHHHHHhhcC--CCcEEEEcH
Confidence 6899999999999983 4455554431 123377763
No 45
>KOG2121|consensus
Probab=96.39 E-value=0.0032 Score=60.72 Aligned_cols=70 Identities=20% Similarity=0.178 Sum_probs=46.3
Q ss_pred cceEEEEecc------cCCee-EEEEEECCCCeEEEEeCCChhHHHHHHHhcC--------CCccEEEeCCCCcchhcCH
Q psy17906 89 GKYTVDLIPA------LKDNY-MYLVVDKASKHAAAIDPVEPHKILDAVNSHS--------AQLKHIWTTHHHQDHAGGN 153 (174)
Q Consensus 89 ~~M~I~~ip~------~~~Ny-~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g--------~~I~~VllTH~H~DHigGl 153 (174)
+.|+|..++. ...|. +++|.- +.+..+++|||++. +-+..+..| .++.+|++||.|.||..|+
T Consensus 441 ~~~eIi~LGTGSaiPskyRNVSS~lv~i-~~~~~IlLDCGEgT-lgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl 518 (746)
T KOG2121|consen 441 KDPEIIFLGTGSAIPSKYRNVSSILVRI-DSDDSILLDCGEGT-LGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGL 518 (746)
T ss_pred CCcEEEEecCCccCCCcccceEEEEEec-cCCccEEeecCCch-HHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccH
Confidence 4688888864 33453 344443 34557999999531 112222223 2689999999999999999
Q ss_pred HHHHHHC
Q psy17906 154 YDLVSRY 160 (174)
Q Consensus 154 ~~L~~~~ 160 (174)
..+.++.
T Consensus 519 ~~vL~~r 525 (746)
T KOG2121|consen 519 ISVLQAR 525 (746)
T ss_pred HHHHHHH
Confidence 9887753
No 46
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=95.51 E-value=0.0074 Score=53.30 Aligned_cols=32 Identities=16% Similarity=0.151 Sum_probs=29.6
Q ss_pred CCCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 23 LPPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 23 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
..++.|-++++||||+|..|.|+..++++||+
T Consensus 224 ~v~P~pgtlvVNiGdmLe~~Tng~lrST~HRV 255 (322)
T COG3491 224 DVPPIPGTLVVNIGDMLERWTNGRLRSTVHRV 255 (322)
T ss_pred ECCCCCCeEEEeHHHHHHHHhCCeecccccee
Confidence 35778899999999999999999999999997
No 47
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=95.30 E-value=0.0085 Score=52.70 Aligned_cols=31 Identities=23% Similarity=0.174 Sum_probs=29.1
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
.++.+.++++|+||+|..|+|.++|++.||+
T Consensus 238 Vpp~pg~~VVNiGD~L~~wTng~~kSt~HRV 268 (332)
T PLN03002 238 VPPIKGAFIVNLGDMLERWSNGFFKSTLHRV 268 (332)
T ss_pred CCCCCCeEEEEHHHHHHHHhCCeeECcCCee
Confidence 4678899999999999999999999999996
No 48
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=95.21 E-value=0.011 Score=51.34 Aligned_cols=31 Identities=16% Similarity=0.049 Sum_probs=29.0
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
-++.+.++++|+||+|..|+|.++|++.||+
T Consensus 202 V~p~pga~vVNiGD~l~~~TNG~~~St~HRV 232 (300)
T PLN02365 202 VDPLPGTLLVNLGDVATAWSNGRLCNVKHRV 232 (300)
T ss_pred cCCCCCeEEEEhhHHHHHHhCCceeccccee
Confidence 4678999999999999999999999999996
No 49
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=95.11 E-value=0.0094 Score=52.83 Aligned_cols=32 Identities=16% Similarity=0.190 Sum_probs=29.5
Q ss_pred CCCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 23 LPPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 23 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
..++.+.++++|+||+|..|+|.++|++.||+
T Consensus 249 ~V~p~pgalVVNiGD~Le~wTNg~~kSt~HRV 280 (341)
T PLN02984 249 NVKPIANTLVVNLGDMMQVISDDEYKSVLHRV 280 (341)
T ss_pred ECCCCCCeEEEECChhhhhhcCCeeeCCCCcc
Confidence 34678899999999999999999999999996
No 50
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=95.09 E-value=0.011 Score=50.43 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=28.7
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
.++.+.++++|+||.|..|+|.++|++.||+
T Consensus 166 V~p~p~a~vVNiGD~l~~~tng~~~S~~HRV 196 (262)
T PLN03001 166 VPPISDAILIIIADQTEIITNGNYKSAQHRA 196 (262)
T ss_pred CCCCCCcEEEEccHHHHHHhCCccccccceE
Confidence 4667889999999999999999999999995
No 51
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=95.06 E-value=0.011 Score=52.52 Aligned_cols=31 Identities=23% Similarity=0.283 Sum_probs=28.9
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
.++.+.++++|+||+|..|+|.++|++.||+
T Consensus 254 V~p~pg~lVVNiGD~Le~~Tng~~kSt~HRV 284 (348)
T PLN00417 254 APIVPDTILINVGDQMEIMSNGIYKSPVHRV 284 (348)
T ss_pred CCCCCCcEEEEcChHHHHHhCCeecccceEE
Confidence 4678899999999999999999999999996
No 52
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=95.01 E-value=0.012 Score=51.94 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=29.4
Q ss_pred CCCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 23 LPPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 23 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
..++.+.++++|+||+|..|+|.++|++.||+
T Consensus 244 ~V~p~pg~~vVNiGD~L~~~Tng~~~St~HRV 275 (345)
T PLN02750 244 PVKPIPDAFIINIGNCMQVWTNDLYWSAEHRV 275 (345)
T ss_pred EccCCCCeEEEEhHHHHHHHhCCeeeccccee
Confidence 34678899999999999999999999999996
No 53
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=94.99 E-value=0.05 Score=48.46 Aligned_cols=51 Identities=29% Similarity=0.312 Sum_probs=33.9
Q ss_pred EEEEEECCCCeEEEEeCCCh-hHHHHHHHhcC---------------------------CCccEEEeCCCCcchhcCHH
Q psy17906 104 MYLVVDKASKHAAAIDPVEP-HKILDAVNSHS---------------------------AQLKHIWTTHHHQDHAGGNY 154 (174)
Q Consensus 104 ~YLI~de~t~~aiLVDpG~~-~~i~~~i~~~g---------------------------~~I~~VllTH~H~DHigGl~ 154 (174)
+||+.....+..+-+|+|.. .-+.....+.+ -.|.+.++||.|.||+.|+-
T Consensus 19 ~~L~~~~~~~s~ialDagt~l~gi~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~I~~ylItH~HLDHi~gLv 97 (335)
T PF02112_consen 19 AYLVRSIGSNSFIALDAGTLLSGINKLIQSKYFSTSFDITLPFWGFASSPYANAAYIIRNHIKGYLITHPHLDHIAGLV 97 (335)
T ss_pred eeeeeecCcCceEEecCccHHHHHHHHhhhcccCCcccccCCccccccChHHHHHHHHHHhhheEEecCCchhhHHHHH
Confidence 68887766678899999921 11111111110 14679999999999999985
No 54
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=94.97 E-value=0.021 Score=49.54 Aligned_cols=41 Identities=22% Similarity=0.324 Sum_probs=26.5
Q ss_pred CCeEEEEeCC---Chh------------HHHH---HHHhcCCCccEEEeCCCCcchhcC
Q psy17906 112 SKHAAAIDPV---EPH------------KILD---AVNSHSAQLKHIWTTHHHQDHAGG 152 (174)
Q Consensus 112 t~~aiLVDpG---~~~------------~i~~---~i~~~g~~I~~VllTH~H~DHigG 152 (174)
.+-.++|||| .+. ++.+ .+++...+.+-|.+||.|+||..-
T Consensus 23 ~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtP 81 (304)
T COG2248 23 KDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTP 81 (304)
T ss_pred CCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCc
Confidence 4678999999 111 1222 222223356789999999999854
No 55
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=94.80 E-value=0.015 Score=51.81 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=28.7
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
-++.+.++++|+||+|..|+|.++|++.||+
T Consensus 261 V~p~pgalVVNiGD~lq~~SNg~~kS~~HRV 291 (358)
T PLN02254 261 VPPVPGSLVVNVGDLLHILSNGRFPSVLHRA 291 (358)
T ss_pred cccCCCCEEEEhHHHHHHHhCCeecccccee
Confidence 4567899999999999999999999999995
No 56
>PLN02216 protein SRG1
Probab=94.79 E-value=0.012 Score=52.24 Aligned_cols=32 Identities=13% Similarity=0.133 Sum_probs=29.2
Q ss_pred CCCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 23 LPPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 23 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
.-++.+.++++|+||+|..|+|.++|++.||+
T Consensus 260 ~V~p~pgalvVNiGD~L~~~TNG~~kS~~HRV 291 (357)
T PLN02216 260 SVKPLPNALVVNVGDILEIITNGTYRSIEHRG 291 (357)
T ss_pred ECCCCCCeEEEEcchhhHhhcCCeeeccCcee
Confidence 34678899999999999999999999999995
No 57
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=94.78 E-value=0.014 Score=51.58 Aligned_cols=32 Identities=25% Similarity=0.210 Sum_probs=29.3
Q ss_pred CCCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 23 LPPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 23 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
..++.+.++++|+||+|..|+|.++|++.||+
T Consensus 230 ~Vpp~pga~VVNiGD~l~~wTNg~~kSt~HRV 261 (335)
T PLN02156 230 DVPPDHSSFFVLVGDTLQVMTNGRFKSVKHRV 261 (335)
T ss_pred EccCCCCcEEEEhHHHHHHHhCCeeeccceee
Confidence 34678889999999999999999999999996
No 58
>PLN02704 flavonol synthase
Probab=94.73 E-value=0.014 Score=51.41 Aligned_cols=31 Identities=16% Similarity=0.200 Sum_probs=28.6
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
.++.+.++++|+||+|..|+|.++|++.||+
T Consensus 249 V~p~pg~lvVNvGD~L~~~TNg~~kSt~HRV 279 (335)
T PLN02704 249 VKYIPNALVIHIGDQIEILSNGKYKSVLHRT 279 (335)
T ss_pred CCCCCCeEEEEechHHHHHhCCeeeccccee
Confidence 4567889999999999999999999999996
No 59
>KOG1137|consensus
Probab=94.70 E-value=0.013 Score=55.34 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=47.1
Q ss_pred ceEEEEecc---cCCeeEEEEEECCCCeEEEEeCCC-----hhHHHHHHHhcCC-CccEEEeCCCCcchhcCHHHHHHHC
Q psy17906 90 KYTVDLIPA---LKDNYMYLVVDKASKHAAAIDPVE-----PHKILDAVNSHSA-QLKHIWTTHHHQDHAGGNYDLVSRY 160 (174)
Q Consensus 90 ~M~I~~ip~---~~~Ny~YLI~de~t~~aiLVDpG~-----~~~i~~~i~~~g~-~I~~VllTH~H~DHigGl~~L~~~~ 160 (174)
.+.+..+++ .+.. |.++.-. +..+++|||. +-.-+-+...-.. ++|.+++||.|.||++.++++.++.
T Consensus 13 ~l~~~pLGag~EVGRS-C~ile~k--Gk~iMld~gvhpaysg~aslpf~d~vd~s~id~llIthFhldh~aslp~~~qkT 89 (668)
T KOG1137|consen 13 QLKFTPLGAGNEVGRS-CHILEYK--GKTIMLDCGVHPAYSGMASLPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKT 89 (668)
T ss_pred cEEEEECCCCcccCce-EEEEEec--CeEEEeccccCccccccccccchhhcccccccHHHHhhhhhhhcccccceeeec
Confidence 356666765 5666 7777664 7899999991 1111222222222 6888999999999999999998863
No 60
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=94.70 E-value=0.015 Score=51.01 Aligned_cols=31 Identities=19% Similarity=0.301 Sum_probs=28.8
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
.++.+.++++|+||+|..|+|.++|++.||+
T Consensus 209 V~p~pg~lvVNiGD~l~~~Tng~~kS~~HRV 239 (321)
T PLN02299 209 VPPMRHSIVVNLGDQLEVITNGKYKSVMHRV 239 (321)
T ss_pred CCCCCCeEEEEeCHHHHHHhCCceeccccee
Confidence 4667889999999999999999999999996
No 61
>PLN02485 oxidoreductase
Probab=94.68 E-value=0.016 Score=50.64 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=29.1
Q ss_pred CCCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 23 LPPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 23 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
.-++.+.++++|+||+|..|+|.++|++.||+
T Consensus 239 ~V~p~pg~~vVNiGD~L~~~TnG~~~St~HRV 270 (329)
T PLN02485 239 WAIPIPGTFVCNIGDMLKIWSNGVYQSTLHRV 270 (329)
T ss_pred ECCCCCCcEEEEhHHHHHHHHCCEeeCCCcee
Confidence 34567889999999999999999999999996
No 62
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=94.66 E-value=0.013 Score=51.91 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=29.3
Q ss_pred CCCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 23 LPPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 23 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
..++.+.++++|+||+|..|+|.++|++.||+
T Consensus 246 ~V~p~pgalvVNiGD~L~~~TNG~~kSt~HRV 277 (348)
T PLN02912 246 AVNPIPNTFIVNLGDQMQVISNDKYKSVLHRA 277 (348)
T ss_pred ECCCcCCeEEEEcCHHHHHHhCCEEEcccccc
Confidence 34678899999999999999999999999995
No 63
>PLN02904 oxidoreductase
Probab=94.65 E-value=0.015 Score=51.69 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=28.9
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
.++.+.++++|+||+|..|+|.++|++.||+
T Consensus 258 V~p~pgalVVNiGD~Le~~TNG~~kSt~HRV 288 (357)
T PLN02904 258 VPYIEGALIVQLGDQVEVMSNGIYKSVVHRV 288 (357)
T ss_pred CCCCCCeEEEEccHHHHHHhCCeeeccCCcc
Confidence 4678899999999999999999999999996
No 64
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=94.59 E-value=0.016 Score=51.65 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=28.7
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
-++.+.++++|+||+|..|+|.++|++.||+
T Consensus 247 Vpp~pgalVVNiGD~L~~~TNG~~kSt~HRV 277 (358)
T PLN02515 247 VQPVEGAFVVNLGDHGHYLSNGRFKNADHQA 277 (358)
T ss_pred CCCCCCeEEEEccHHHHHHhCCeeeeecceE
Confidence 4667889999999999999999999999995
No 65
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=94.56 E-value=0.017 Score=50.79 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=28.7
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
.++.+.++++|+||+|..|+|.++|++.||+
T Consensus 241 V~p~pg~lVVNiGD~L~~~TNG~~kSt~HRV 271 (337)
T PLN02639 241 VNPHPGAFVINIGDQLQALSNGRYKSVWHRA 271 (337)
T ss_pred ccCCCCeEEEechhHHHHHhCCeeeccCccc
Confidence 4567889999999999999999999999995
No 66
>PLN02997 flavonol synthase
Probab=94.51 E-value=0.019 Score=50.54 Aligned_cols=31 Identities=19% Similarity=0.036 Sum_probs=28.6
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
-++.+.++++|+||+|..|+|.++|++.||+
T Consensus 233 V~p~pgalvVNiGD~Le~~TNG~~kSt~HRV 263 (325)
T PLN02997 233 LNYINSAVVVIIGDQLMRMTNGRFKNVLHRA 263 (325)
T ss_pred CCCCCCeEEEEechHHHHHhCCcccccccee
Confidence 3667889999999999999999999999996
No 67
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=94.47 E-value=0.017 Score=51.36 Aligned_cols=32 Identities=22% Similarity=0.257 Sum_probs=29.3
Q ss_pred CCCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 23 LPPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 23 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
..++.+.++++|+||+|..|+|.++|++.||+
T Consensus 263 ~V~p~pgalVVNiGD~l~~~Tng~~kSt~HRV 294 (362)
T PLN02393 263 TVKPVPDAFIVNIGDQIQVLSNAIYKSVEHRV 294 (362)
T ss_pred ECCCCCCeEEEEcchhhHhhcCCeeeccceec
Confidence 34678899999999999999999999999995
No 68
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=94.43 E-value=0.13 Score=35.19 Aligned_cols=45 Identities=22% Similarity=0.230 Sum_probs=32.9
Q ss_pred EEEEEECCCCeEEEE-eCCChhHHHHHHHhcCC---CccEEEeCCCC-cchhcC
Q psy17906 104 MYLVVDKASKHAAAI-DPVEPHKILDAVNSHSA---QLKHIWTTHHH-QDHAGG 152 (174)
Q Consensus 104 ~YLI~de~t~~aiLV-DpG~~~~i~~~i~~~g~---~I~~VllTH~H-~DHigG 152 (174)
|.++.-+ +...|+ ++|++ ..+.+.++++ ++..||+|+.. ||++||
T Consensus 14 ~l~l~~d--~~rYlFGn~gEG--tQR~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 14 SLLLFFD--SRRYLFGNCGEG--TQRACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred EEEEEeC--CceEEeccCCcH--HHHHHHHcCCCccccceEEECCCCcccccCC
Confidence 4444433 367888 89965 4455666655 68999999999 999997
No 69
>PTZ00273 oxidase reductase; Provisional
Probab=94.41 E-value=0.022 Score=49.62 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=29.8
Q ss_pred CCCCcccceeechhhhhhhhcCCCCCccccccc
Q psy17906 23 LPPATPFLFKFNYLARFSTMANDDFKPVTHYFR 55 (174)
Q Consensus 23 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 55 (174)
..++.+.++++|+||+|..|+|.++|++.||+.
T Consensus 228 ~V~p~pg~lvVNvGD~l~~~TnG~~kSt~HRVv 260 (320)
T PTZ00273 228 DVPPLEGSFVVNIGDMMEMWSNGRYRSTPHRVV 260 (320)
T ss_pred eCCCCCCeEEEEHHHHHHHHHCCeeeCCCcccc
Confidence 446788999999999999999999999999963
No 70
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=94.33 E-value=0.022 Score=50.64 Aligned_cols=31 Identities=13% Similarity=0.161 Sum_probs=28.5
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
-++.+.++++|+||.|..|+|.++|++.||+
T Consensus 261 V~p~pg~lvVNiGD~L~~~TNG~~kSt~HRV 291 (360)
T PLN03178 261 AKCVPDSIVVHIGDTLEILSNGRYKSILHRG 291 (360)
T ss_pred cCCCCCeEEEEccHHHHHHhCCcccccccee
Confidence 4567889999999999999999999999995
No 71
>PLN02276 gibberellin 20-oxidase
Probab=94.26 E-value=0.027 Score=50.17 Aligned_cols=32 Identities=19% Similarity=0.190 Sum_probs=29.5
Q ss_pred CCCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 23 LPPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 23 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
..++.+.++++|+||+|..|+|.++|++.||+
T Consensus 255 ~V~p~pgalVVNiGD~L~~~TNG~~kSt~HRV 286 (361)
T PLN02276 255 SVRPRPGALVVNIGDTFMALSNGRYKSCLHRA 286 (361)
T ss_pred EcCCCCCeEEEEcHHHHHHHhCCcccccccee
Confidence 45678899999999999999999999999995
No 72
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=93.83 E-value=0.027 Score=50.18 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=29.2
Q ss_pred CCCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 23 LPPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 23 ~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
.-++.+.++++|+||.|..|+|.++|++.||+
T Consensus 262 ~V~p~pgalVVNiGD~L~~~SNG~~kS~~HRV 293 (361)
T PLN02758 262 PVHPVPNALVINIGDTLEVLTNGKYKSVEHRA 293 (361)
T ss_pred eCCCCCCeEEEEccchhhhhcCCeeeccccee
Confidence 34667889999999999999999999999996
No 73
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=93.79 E-value=0.03 Score=48.88 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=27.6
Q ss_pred CCCcc-cceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATP-FLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~-~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
-++++ .++++|+||+|..|+|.++|++.||+
T Consensus 204 V~p~p~~~lvVNvGD~L~~~Tng~~~S~~HRV 235 (303)
T PLN02403 204 IPPSKNNTIFVNTGDQLEVLSNGRYKSTLHRV 235 (303)
T ss_pred CCCCCCCEEEEEehHHHHHHhCCeeeccccee
Confidence 35566 68999999999999999999999995
No 74
>PLN02947 oxidoreductase
Probab=93.31 E-value=0.024 Score=50.88 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=28.8
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
-++.+.++++|+||.|..|+|.++|++.||+
T Consensus 275 V~p~pga~VVNvGD~Lq~~SNG~~kS~~HRV 305 (374)
T PLN02947 275 VEPIPGSFVVNVGDHLEIFSNGRYKSVLHRV 305 (374)
T ss_pred CCCCCCeEEEEeCceeeeeeCCEEecccccc
Confidence 4667899999999999999999999999995
No 75
>KOG0143|consensus
Probab=91.97 E-value=0.077 Score=46.74 Aligned_cols=31 Identities=26% Similarity=0.356 Sum_probs=28.1
Q ss_pred CCCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 24 PPATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 24 ~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
-++++..|++|+||+|.-|+|.++|+..||.
T Consensus 228 V~P~p~a~vVNiGD~l~~lSNG~ykSv~HRV 258 (322)
T KOG0143|consen 228 VPPIPGAFVVNIGDMLQILSNGRYKSVLHRV 258 (322)
T ss_pred CCCCCCCEEEEcccHHhHhhCCcccceEEEE
Confidence 4567778999999999999999999999994
No 76
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=80.37 E-value=9.4 Score=33.48 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=49.8
Q ss_pred EEEEEECCCCeEEEEeCC-ChhHHHHHHHhc---CCCccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcCC
Q psy17906 104 MYLVVDKASKHAAAIDPV-EPHKILDAVNSH---SAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 104 ~YLI~de~t~~aiLVDpG-~~~~i~~~i~~~---g~~I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~~ 173 (174)
|-+|.=. +++.+|..|. -.+.+.+.+++. +.++++|+.--...-|-.-+..++++||+++ ||++.+
T Consensus 22 MTVVrL~-~G~L~VhSPvapT~el~~~l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~afP~A~---v~~~Pg 91 (285)
T PF14234_consen 22 MTVVRLS-DGGLWVHSPVAPTPELKAELDELEAQHGPVKYIVAPNKGLEHHLFLGPWARAFPDAK---VWAPPG 91 (285)
T ss_pred EEEEEEC-CCCEEEECCCCCCHHHHHHHHHHhccCCceeEEEcCCcchhHHHhHHHHHHHCCCCE---EEeCCC
Confidence 5555544 3678888888 345555566655 6699999987665568889999999999999 998764
No 77
>KOG4736|consensus
Probab=77.00 E-value=2 Score=37.92 Aligned_cols=47 Identities=23% Similarity=0.326 Sum_probs=34.7
Q ss_pred EEEEEECCCCeEEEEeCCChhHHHHHHHhcCC---CccEEEeCCCCcchhcCHHHHH
Q psy17906 104 MYLVVDKASKHAAAIDPVEPHKILDAVNSHSA---QLKHIWTTHHHQDHAGGNYDLV 157 (174)
Q Consensus 104 ~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~---~I~~VllTH~H~DHigGl~~L~ 157 (174)
.-++.| +...+++|.|-+ .+.+.++ +|+.+++||.|.+|+|++..+.
T Consensus 97 ~tl~~d--~~~v~v~~~gls-----~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~ 146 (302)
T KOG4736|consen 97 ITLVVD--GGDVVVVDTGLS-----VLAKEGVTLDQIDSVVITHKSPGHLGNNNLFP 146 (302)
T ss_pred cceeec--CCceEEEecCCc-----hhhhcCcChhhcceeEEeccCccccccccccc
Confidence 345555 367899999944 3445555 6899999999999999996543
No 78
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=76.39 E-value=0.97 Score=39.98 Aligned_cols=19 Identities=32% Similarity=0.541 Sum_probs=16.9
Q ss_pred CccEEEeCCCCcchhcCHH
Q psy17906 136 QLKHIWTTHHHQDHAGGNY 154 (174)
Q Consensus 136 ~I~~VllTH~H~DHigGl~ 154 (174)
.|+.-++||.|.||+.|+-
T Consensus 112 ~I~~y~ITH~HLDHIsGlV 130 (356)
T COG5212 112 SINSYFITHAHLDHISGLV 130 (356)
T ss_pred hhhheEeccccccchhcee
Confidence 5788999999999999973
No 79
>KOG1137|consensus
Probab=72.81 E-value=8.3 Score=37.08 Aligned_cols=83 Identities=12% Similarity=0.063 Sum_probs=53.7
Q ss_pred ccccccceEEEEecc--cCCeeEEEEEECCCCeEEEEeCCChh----HHHHHHHhc--CC------CccEEEeCCCCcch
Q psy17906 84 VTHDFGKYTVDLIPA--LKDNYMYLVVDKASKHAAAIDPVEPH----KILDAVNSH--SA------QLKHIWTTHHHQDH 149 (174)
Q Consensus 84 ~~~~~~~M~I~~ip~--~~~Ny~YLI~de~t~~aiLVDpG~~~----~i~~~i~~~--g~------~I~~VllTH~H~DH 149 (174)
++++...++++.+.+ .-+|+||++.-. ...|+|+|+.. +-+.+.+-- +. ..-++.++|.|.||
T Consensus 144 e~~ev~gIkf~p~~aGhVlgacMf~veia---gv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~h~~r~~r 220 (668)
T KOG1137|consen 144 ETVEVNGIKFWPYHAGHVLGACMFMVEIA---GVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQIHEPREER 220 (668)
T ss_pred cccccCCeEEEeeccchhhhheeeeeeec---eEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEecCchHHh
Confidence 345566788888865 556778888653 68999999321 111111111 21 23578899999999
Q ss_pred hcCHHHHHHHCCCCcc-----ccEEEc
Q psy17906 150 AGGNYDLVSRYPHLKE-----HPVYGL 171 (174)
Q Consensus 150 igGl~~L~~~~p~~~~-----ipVy~~ 171 (174)
.+.+.++.... .++ +||||.
T Consensus 221 e~rlt~vIh~~--v~rGGR~L~PvFAl 245 (668)
T KOG1137|consen 221 EGRLTWVIHST--VPRGGRVLIPVFAL 245 (668)
T ss_pred hhhhhhhHHhh--ccCCCceEeeeeec
Confidence 99999987653 222 667764
No 80
>KOG3592|consensus
Probab=61.84 E-value=11 Score=37.31 Aligned_cols=45 Identities=18% Similarity=0.191 Sum_probs=32.4
Q ss_pred eEEEEeCC-C-hhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHH
Q psy17906 114 HAAAIDPV-E-PHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSR 159 (174)
Q Consensus 114 ~aiLVDpG-~-~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~ 159 (174)
-.+|||.| + -..++.+++.. -++++||+||--.|..+|+..|.++
T Consensus 58 f~iLv~GgserKS~fwklVrHl-drVdaVLLthpg~dNLpginsllqr 104 (934)
T KOG3592|consen 58 FNILVNGGSERKSCFWKLVRHL-DRVDAVLLTHPGADNLPGINSLLQR 104 (934)
T ss_pred eEEeecCCcccccchHHHHHHH-hhhhhhhhcccccCccccchHHHHH
Confidence 45666666 3 23455555532 3799999999999999999887654
No 81
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=58.82 E-value=14 Score=30.42 Aligned_cols=41 Identities=17% Similarity=0.104 Sum_probs=26.3
Q ss_pred EEeCC-ChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHH
Q psy17906 117 AIDPV-EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSR 159 (174)
Q Consensus 117 LVDpG-~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~ 159 (174)
+||+| ..-...+.+++.|.+=-+++.||+-.- ++.....+.
T Consensus 92 iIdtg~Tl~~aA~~Lk~~GA~~V~~~aTHgvfs--~~A~~~l~~ 133 (184)
T PF14572_consen 92 IIDTGGTLIKAAELLKERGAKKVYACATHGVFS--GDAPERLEE 133 (184)
T ss_dssp EESSTHHHHHHHHHHHHTTESEEEEEEEEE-----TTHHHHHHH
T ss_pred cccchHHHHHHHHHHHHcCCCEEEEEEeCcccC--chHHHHHhh
Confidence 55566 344455678888987779999998873 566555554
No 82
>KOG1361|consensus
Probab=56.58 E-value=4.6 Score=37.85 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.3
Q ss_pred CccEEEeCCCCcchhcCHHH
Q psy17906 136 QLKHIWTTHHHQDHAGGNYD 155 (174)
Q Consensus 136 ~I~~VllTH~H~DHigGl~~ 155 (174)
...+=++||.|.||..|+-.
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~ 131 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTK 131 (481)
T ss_pred ccceeeeecccccccccccc
Confidence 67789999999999988754
No 83
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=51.79 E-value=37 Score=27.76 Aligned_cols=54 Identities=17% Similarity=0.319 Sum_probs=35.6
Q ss_pred CCeEEEEeCC-----ChhHHHHHHHhcCCC-ccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcC
Q psy17906 112 SKHAAAIDPV-----EPHKILDAVNSHSAQ-LKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 112 t~~aiLVDpG-----~~~~i~~~i~~~g~~-I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~ 172 (174)
++..+|+|+- ......+.+++.|.+ |..+.+ ..--.|+..+.+.+|+.+ ||...
T Consensus 124 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~~~~l----l~~~~gl~~l~~~~p~v~---i~~~~ 183 (209)
T PRK00129 124 ERTVIVVDPMLATGGSAIAAIDLLKKRGAKNIKVLCL----VAAPEGIKALEEAHPDVE---IYTAA 183 (209)
T ss_pred CCEEEEECCcccchHHHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCCcE---EEEEe
Confidence 4568888876 334456667777753 322222 445679999999999877 88754
No 84
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=47.20 E-value=34 Score=30.12 Aligned_cols=32 Identities=22% Similarity=0.071 Sum_probs=24.5
Q ss_pred EEeCC-ChhHHHHHHHhcCCCccEEEeCCCCcc
Q psy17906 117 AIDPV-EPHKILDAVNSHSAQLKHIWTTHHHQD 148 (174)
Q Consensus 117 LVDpG-~~~~i~~~i~~~g~~I~~VllTH~H~D 148 (174)
+||+| ......+.+++.|.+--+++.||+=.-
T Consensus 226 IidTG~Tl~~aa~~Lk~~GA~~V~~~~tHglf~ 258 (320)
T PRK02269 226 MIDTAGTICHAADALAEAGATEVYASCTHPVLS 258 (320)
T ss_pred ecCcHHHHHHHHHHHHHCCCCEEEEEEECcccC
Confidence 66777 456667888888988779999997654
No 85
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=45.11 E-value=35 Score=30.10 Aligned_cols=32 Identities=16% Similarity=0.092 Sum_probs=24.7
Q ss_pred EEeCC-ChhHHHHHHHhcCCCccEEEeCCCCcc
Q psy17906 117 AIDPV-EPHKILDAVNSHSAQLKHIWTTHHHQD 148 (174)
Q Consensus 117 LVDpG-~~~~i~~~i~~~g~~I~~VllTH~H~D 148 (174)
++|+| ......+.+++.|.+--+++.||+-.-
T Consensus 226 IidTG~Tl~~aa~~Lk~~GA~~V~~~~THgvfs 258 (319)
T PRK04923 226 LVDTAGTLCAAAAALKQRGALKVVAYITHPVLS 258 (319)
T ss_pred ccCchHHHHHHHHHHHHCCCCEEEEEEECcccC
Confidence 56666 455667778888988778999998874
No 86
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=43.06 E-value=56 Score=26.72 Aligned_cols=54 Identities=17% Similarity=0.274 Sum_probs=35.2
Q ss_pred CCeEEEEeCC-----ChhHHHHHHHhcCCC-ccEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcC
Q psy17906 112 SKHAAAIDPV-----EPHKILDAVNSHSAQ-LKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 112 t~~aiLVDpG-----~~~~i~~~i~~~g~~-I~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~ 172 (174)
++..+|+|+. ......+.+++.|.+ |..+.+ .+--.|+..+.+.||+.+ ||...
T Consensus 122 ~~~VllvDd~laTG~Tl~~ai~~L~~~G~~~I~v~~l----l~~~~gl~~l~~~~p~v~---i~~~~ 181 (207)
T TIGR01091 122 ERTVIVLDPMLATGGTMIAALDLLKKRGAKKIKVLSI----VAAPEGIEAVEKAHPDVD---IYTAA 181 (207)
T ss_pred CCEEEEECCCccchHHHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCCCE---EEEEE
Confidence 3567888876 334456667777764 332222 444578899999999877 88763
No 87
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=41.18 E-value=27 Score=31.04 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=24.5
Q ss_pred EEeCC-ChhHHHHHHHhcCCCccEEEeCCCCcc
Q psy17906 117 AIDPV-EPHKILDAVNSHSAQLKHIWTTHHHQD 148 (174)
Q Consensus 117 LVDpG-~~~~i~~~i~~~g~~I~~VllTH~H~D 148 (174)
|||+| ......+.+++.|.+.-+++.||+=+-
T Consensus 239 IidTG~Tl~~aa~~L~~~Ga~~V~~~~THglfs 271 (326)
T PLN02297 239 LVQSGGTLIECQKVLAAHGAAKVSAYVTHGVFP 271 (326)
T ss_pred ccCcHHHHHHHHHHHHHCCCcEEEEEEECcccC
Confidence 56666 456667788889998889999997554
No 88
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=40.98 E-value=51 Score=27.61 Aligned_cols=45 Identities=16% Similarity=0.135 Sum_probs=36.5
Q ss_pred CeEEEEeCC----ChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHH
Q psy17906 113 KHAAAIDPV----EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVS 158 (174)
Q Consensus 113 ~~aiLVDpG----~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~ 158 (174)
..|+|+|-. ++-.+.+.+.+.|.++--||+| +|.|=-..+..++.
T Consensus 49 pGclllDvrMPg~sGlelq~~L~~~~~~~PVIfiT-GhgDIpmaV~AmK~ 97 (202)
T COG4566 49 PGCLLLDVRMPGMSGLELQDRLAERGIRLPVIFLT-GHGDIPMAVQAMKA 97 (202)
T ss_pred CCeEEEecCCCCCchHHHHHHHHhcCCCCCEEEEe-CCCChHHHHHHHHc
Confidence 479999976 7888899999999988889999 99997666655543
No 89
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=37.93 E-value=29 Score=30.22 Aligned_cols=31 Identities=6% Similarity=-0.068 Sum_probs=22.0
Q ss_pred EEeCC-ChhHHHHHHHhcCCCccEEEeCCCCc
Q psy17906 117 AIDPV-EPHKILDAVNSHSAQLKHIWTTHHHQ 147 (174)
Q Consensus 117 LVDpG-~~~~i~~~i~~~g~~I~~VllTH~H~ 147 (174)
+||+| ......+.+++.|.+--+++.||+=.
T Consensus 220 IidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgvf 251 (301)
T PRK07199 220 IVSTGRTLIEAARQLRAAGAASPDCVVVHALF 251 (301)
T ss_pred ccCcHHHHHHHHHHHHHCCCcEEEEEEEeeeC
Confidence 44555 34556677888898877899999743
No 90
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=37.45 E-value=55 Score=29.04 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=25.2
Q ss_pred CCeEEEEeCC-----ChhHHHHHHHhcCCCccEEEeCCCCcc
Q psy17906 112 SKHAAAIDPV-----EPHKILDAVNSHSAQLKHIWTTHHHQD 148 (174)
Q Consensus 112 t~~aiLVDpG-----~~~~i~~~i~~~g~~I~~VllTH~H~D 148 (174)
++.++|||-. ......+.+++.|.+--+++.||+-.-
T Consensus 218 Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~atHglf~ 259 (332)
T PRK00553 218 NKNCLIVDDMIDTGGTVIAAAKLLKKQKAKKVCVMATHGLFN 259 (332)
T ss_pred CCEEEEEeccccchHHHHHHHHHHHHcCCcEEEEEEEeeecC
Confidence 3455555554 344556678888888889999998553
No 91
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=35.22 E-value=69 Score=26.18 Aligned_cols=52 Identities=13% Similarity=0.374 Sum_probs=34.1
Q ss_pred CCeEEEEeCC--C---hhHHHHHHHhcCCCc-----cEEEeCCCCcchhcCHHHHHHHCCCCccccEEEcC
Q psy17906 112 SKHAAAIDPV--E---PHKILDAVNSHSAQL-----KHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 112 t~~aiLVDpG--~---~~~i~~~i~~~g~~I-----~~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~ 172 (174)
.+..+|+||- . .-..++.++++|... -.++.+- -|+..+.+.||+.+ ||...
T Consensus 121 ~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias~------~Gl~~l~~~~P~v~---I~ta~ 182 (207)
T PF14681_consen 121 NRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIASP------EGLERLLKAFPDVR---IYTAA 182 (207)
T ss_dssp TSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEEH------HHHHHHHHHSTTSE---EEEEE
T ss_pred CCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEecH------HHHHHHHHhCCCeE---EEEEE
Confidence 3567888886 3 344456667777643 3444443 29999999999877 88753
No 92
>KOG1448|consensus
Probab=34.34 E-value=94 Score=27.75 Aligned_cols=44 Identities=30% Similarity=0.189 Sum_probs=30.4
Q ss_pred EEEEEECCCCeEEEEeCC-----ChhHHHHHHHhcCCCccEEEeCCCCc
Q psy17906 104 MYLVVDKASKHAAAIDPV-----EPHKILDAVNSHSAQLKHIWTTHHHQ 147 (174)
Q Consensus 104 ~YLI~de~t~~aiLVDpG-----~~~~i~~~i~~~g~~I~~VllTH~H~ 147 (174)
+.++.|-.++-++|||-- ..-.-.+.+.++|.+=.+.++||+=+
T Consensus 206 m~LVGDv~gkvailVDDm~dt~GTl~~aa~~L~~~GA~kV~a~~THgVf 254 (316)
T KOG1448|consen 206 MVLVGDVKGKVAILVDDMADTCGTLIKAADKLLEHGAKKVYAIVTHGVF 254 (316)
T ss_pred EEEEeccCCcEEEEecccccccchHHHHHHHHHhcCCceEEEEEcceec
Confidence 677777667778888865 22233455666888777899999754
No 93
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=33.84 E-value=42 Score=29.63 Aligned_cols=32 Identities=9% Similarity=-0.061 Sum_probs=22.9
Q ss_pred EEeCC-ChhHHHHHHHhcCCCccEEEeCCCCcc
Q psy17906 117 AIDPV-EPHKILDAVNSHSAQLKHIWTTHHHQD 148 (174)
Q Consensus 117 LVDpG-~~~~i~~~i~~~g~~I~~VllTH~H~D 148 (174)
+||+| ......+.+++.|.+=-+++.||+-.-
T Consensus 227 IidTG~Tl~~aa~~Lk~~GA~~V~~~~tHgif~ 259 (323)
T PRK02458 227 ILNTGKTFAEAAKIVEREGATEIYAVASHGLFA 259 (323)
T ss_pred eeCcHHHHHHHHHHHHhCCCCcEEEEEEChhcC
Confidence 55666 455566778888887668999998653
No 94
>PF14545 DBB: Dof, BCAP, and BANK (DBB) motif,
Probab=33.46 E-value=20 Score=28.34 Aligned_cols=50 Identities=18% Similarity=0.229 Sum_probs=40.9
Q ss_pred eeeeeeeehhhHHHHHhhcCCCCcccceee-----chhhhhhhhcCCCCCccccc
Q psy17906 4 TRKISFLVYKPLLKQCMSLLPPATPFLFKF-----NYLARFSTMANDDFKPVTHY 53 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----n~~~~~~~~~~~~~~~~~~~ 53 (174)
++++++.-.-.-+.|+.+...+|++|.||. |-.|.|-+|=...||..|++
T Consensus 81 ~~~ikyys~~~el~~lL~~~~~PvefmCQa~~i~p~~~E~LD~~Lt~sfk~niP~ 135 (142)
T PF14545_consen 81 TRQIKYYSRMRELEQLLRKAANPVEFMCQAFGISPNDREELDNLLTESFKKNIPA 135 (142)
T ss_pred EEeEEEEecHHHHHHHHHhcCChhhhhhhhcCCCCCCHHHHHHHHHHHHHhcCCh
Confidence 467777777777889999999999999993 22499999988888888887
No 95
>cd02653 nuc_hydro_3 NH_3: A subgroup of nucleoside hydrolases. This group contains eukaryotic and bacterial proteins similar to nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=31.64 E-value=1e+02 Score=26.90 Aligned_cols=57 Identities=18% Similarity=0.079 Sum_probs=34.3
Q ss_pred EEEeCC----ChhHHHHHHHhcCCCccEEEeCCCCcchh---cCHHHHHHHCCCCccccEEEcCC
Q psy17906 116 AAIDPV----EPHKILDAVNSHSAQLKHIWTTHHHQDHA---GGNYDLVSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 116 iLVDpG----~~~~i~~~i~~~g~~I~~VllTH~H~DHi---gGl~~L~~~~p~~~~ipVy~~~~ 173 (174)
+|||+- +.-.+.-++....++|.+|-.+++..+-- .-...+.+.. +..+||||.+..
T Consensus 2 vIiDtD~GiDDa~AL~~al~~p~iel~gIt~v~GN~~~~~~~~Na~~ll~~~-g~~dIPV~~Ga~ 65 (320)
T cd02653 2 VIIDCDPGIDDALALLYLLASPDLDVVGITTTAGNVPVEQVAANALGVLELL-GRTDIPVYLGAD 65 (320)
T ss_pred EEEECCCChHHHHHHHHHhhCCCCeEEEEEEcCCccCHHHHHHHHHHHHHHc-CCCCCcEEeCCC
Confidence 455554 23333334455567888999998876432 2345566666 444688998753
No 96
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=31.32 E-value=75 Score=28.32 Aligned_cols=52 Identities=19% Similarity=0.152 Sum_probs=32.1
Q ss_pred EEEEECCCCeEEEEeC----C-ChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHH
Q psy17906 105 YLVVDKASKHAAAIDP----V-EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVS 158 (174)
Q Consensus 105 YLI~de~t~~aiLVDp----G-~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~ 158 (174)
+++.|-.++.++|||- | ..-.-.+.++++|.+=-++..||+=.= |+.....+
T Consensus 207 ~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GAk~V~a~~tH~vfs--~~a~~~l~ 263 (314)
T COG0462 207 NLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGAKKVYAAATHGVFS--GAALERLE 263 (314)
T ss_pred ecccccCCCEEEEEeccccccHHHHHHHHHHHHCCCCeEEEEEEchhhC--hHHHHHHh
Confidence 3444444555666654 4 333445678888987778999998776 44444433
No 97
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit. The holoenzyme has the activity (1.14.11.2 from EC) catalysing the reaction: Procollagen L-proline + 2-oxoglutarate + O2 = procollagen trans-4-hydroxy-L-proline + succinate + CO2. The full enzyme consists of a alpha2 beta2 complex with the alpha subunit contributing most of the parts of the active site []. The family also includes lysyl hydrolases, isopenicillin synthases and AlkB. ; GO: 0016491 oxidoreductase activity, 0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, 0055114 oxidation-reduction process; PDB: 3ON7_D 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=30.59 E-value=28 Score=24.21 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=21.1
Q ss_pred CCcccceeechhhhhhhhcCCCCCcccccc
Q psy17906 25 PATPFLFKFNYLARFSTMANDDFKPVTHYF 54 (174)
Q Consensus 25 ~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~ 54 (174)
++.+..+.+|.+++|.-|.|...+...|++
T Consensus 52 ~~~~~~~~v~~G~~l~~~t~g~~~~~~HrV 81 (98)
T PF03171_consen 52 PPPPGGFIVNFGDALEILTNGRYPATLHRV 81 (98)
T ss_dssp ---TTCEEEEEBHHHHHHTTTSS----EEE
T ss_pred cCccceeeeeceeeeecccCCccCCceeee
Confidence 344558999999999999999999999995
No 98
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=29.97 E-value=73 Score=29.64 Aligned_cols=32 Identities=19% Similarity=0.194 Sum_probs=24.2
Q ss_pred EEeCC-ChhHHHHHHHhcCCCccEEEeCCCCcc
Q psy17906 117 AIDPV-EPHKILDAVNSHSAQLKHIWTTHHHQD 148 (174)
Q Consensus 117 LVDpG-~~~~i~~~i~~~g~~I~~VllTH~H~D 148 (174)
+||+| ......+.+++.|.+--+++.||+-..
T Consensus 344 IIdTG~Tl~~aa~~Lk~~GA~~V~~~~THglfs 376 (439)
T PTZ00145 344 MIDTSGTLCEAAKQLKKHGARRVFAFATHGLFS 376 (439)
T ss_pred eeCcHHHHHHHHHHHHHcCCCEEEEEEEcccCC
Confidence 66676 445556778888887668999999876
No 99
>cd02650 nuc_hydro_CaPnhB NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity.
Probab=29.72 E-value=1.1e+02 Score=26.39 Aligned_cols=57 Identities=12% Similarity=0.065 Sum_probs=33.7
Q ss_pred EEEeCC----ChhHHHHHHHhcCCCccEEEeCCCCcch---hcCHHHHHHHCCCCccccEEEcCC
Q psy17906 116 AAIDPV----EPHKILDAVNSHSAQLKHIWTTHHHQDH---AGGNYDLVSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 116 iLVDpG----~~~~i~~~i~~~g~~I~~VllTH~H~DH---igGl~~L~~~~p~~~~ipVy~~~~ 173 (174)
++||+- +.-.+.-.+....++|.+|-.+++-.+. +.-...+.+.+ +..+||||.+..
T Consensus 2 vIiDtD~g~DD~~AL~~al~~p~~~v~gIt~~~Gn~~~~~~~~na~~~l~~~-g~~diPV~~G~~ 65 (304)
T cd02650 2 LILDTDPGIDDAMALAYALAHPDVDLIGVTTVYGNVTIETATRNALALLELF-GRPDVPVAEGAA 65 (304)
T ss_pred EEEECCCCHHHHHHHHHHhcCCCCEEEEEEEccCCcCHHHHHHHHHHHHHHh-CCCCCCEEcCCC
Confidence 456654 2333333445456788899888876653 23335566666 334588997643
No 100
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=29.25 E-value=1e+02 Score=26.44 Aligned_cols=56 Identities=20% Similarity=0.063 Sum_probs=32.7
Q ss_pred EEEeCC----ChhHHHHHHHhcCCCccEEEeCCCCcchh---cCHHHHHHHCCCCccccEEEcC
Q psy17906 116 AAIDPV----EPHKILDAVNSHSAQLKHIWTTHHHQDHA---GGNYDLVSRYPHLKEHPVYGLK 172 (174)
Q Consensus 116 iLVDpG----~~~~i~~~i~~~g~~I~~VllTH~H~DHi---gGl~~L~~~~p~~~~ipVy~~~ 172 (174)
+|||+- +.-.+.-++....+++.+|-.+++-.+-- .-+..+.+.. +..+||||.+.
T Consensus 2 vIiDtD~g~DDa~Al~~al~~~~~~l~gIt~v~Gn~~~~~~~~na~~ll~~~-g~~diPV~~Ga 64 (302)
T cd02651 2 IIIDCDPGHDDAVAILLALFHPELDLLGITTVAGNVPLEKTTRNALKLLTLL-GRTDVPVAAGA 64 (302)
T ss_pred eEEECCCCHHHHHHHHHHhcCCCceEEEEEeccCeecHHHHHHHHHHHHHHh-CCCCCcEEcCC
Confidence 455554 23333333444466788888888775542 2345566666 44468899764
No 101
>PLN02717 uridine nucleosidase
Probab=28.04 E-value=1.2e+02 Score=26.48 Aligned_cols=57 Identities=19% Similarity=0.098 Sum_probs=33.4
Q ss_pred EEEeCC----ChhHHHHHHHhcCCCccEEEeCCCCcc--hhc-CHHHHHHHCCCCccccEEEcCC
Q psy17906 116 AAIDPV----EPHKILDAVNSHSAQLKHIWTTHHHQD--HAG-GNYDLVSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 116 iLVDpG----~~~~i~~~i~~~g~~I~~VllTH~H~D--Hig-Gl~~L~~~~p~~~~ipVy~~~~ 173 (174)
+|||+- +.-.+.-++....++|.+|-.+++-.+ ... -...+.+.+ +..+||||.+..
T Consensus 3 vIiDtD~GiDDa~Al~~al~~~~~~l~gIt~v~GN~~~~~~~~na~~ll~~~-g~~diPV~~Ga~ 66 (316)
T PLN02717 3 LIIDTDPGIDDAMAILMALRSPEVEVIGLTTIFGNVTTKLATRNALHLLEMA-GRPDVPVAEGSH 66 (316)
T ss_pred EEEECCCChHHHHHHHHHhcCCCceEEEEEEccCCcCHHHHHHHHHHHHHHc-CCCCCCEEeCCC
Confidence 566654 233333334445678888888887743 322 234566666 445688998754
No 102
>PLN02541 uracil phosphoribosyltransferase
Probab=27.69 E-value=1e+02 Score=26.34 Aligned_cols=52 Identities=19% Similarity=0.305 Sum_probs=35.3
Q ss_pred CeEEEEeCC-----ChhHHHHHHHhcCCCcc-----EEEeCCCCcchhcCHHHHHHHCCCCccccEEEcCC
Q psy17906 113 KHAAAIDPV-----EPHKILDAVNSHSAQLK-----HIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 113 ~~aiLVDpG-----~~~~i~~~i~~~g~~I~-----~VllTH~H~DHigGl~~L~~~~p~~~~ipVy~~~~ 173 (174)
+..+|+||- ......+.+++.|.+.. .++-+ --|+..+.+.||+.+ ||...-
T Consensus 158 ~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I~~v~~ias------~~Gl~~i~~~fP~v~---I~ta~I 219 (244)
T PLN02541 158 SRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAA------PPALKKLSEKFPGLH---VYAGII 219 (244)
T ss_pred CEEEEECcchhhhHHHHHHHHHHHHcCCCcccEEEEEEEEC------HHHHHHHHHHCcCCE---EEEEEE
Confidence 468999997 34445667777887522 22222 268999999999887 887643
No 103
>PF01156 IU_nuc_hydro: Inosine-uridine preferring nucleoside hydrolase; InterPro: IPR001910 Inosine-uridine preferring nucleoside hydrolase (3.2.2.1 from EC) (IU-nucleoside hydrolase or IUNH) is an enzyme first identified in protozoan [] that catalyses the hydrolysis of all of the commonly occuring purine and pyrimidine nucleosides into ribose and the associated base, but has a preference for inosine and uridine as substrates. This enzyme is important for these parasitic organisms, which are deficient in de novo synthesis of purines, to salvage the host purine nucleosides. IUNH from Crithidia fasciculata has been sequenced and characterised, it is an homotetrameric enzyme of subunits of 34 Kd. An histidine has been shown to be important for the catalytic mechanism, it acts as a proton donor to activate the hypoxanthine leaving group. A highly conserved region located in the N-terminal extremity contains four conserved aspartates that have been shown [] to be located in the active site cavity. IUNH is evolutionary related to a number of uncharacterised proteins from various biological sources. This entry represents the structural domain of IUNH.; PDB: 1EZR_D 2MAS_B 1MAS_A 3MKM_C 3MKN_C 2C40_A 3T8J_A 2FF2_B 1KIE_A 2FF1_A ....
Probab=27.67 E-value=84 Score=26.78 Aligned_cols=59 Identities=19% Similarity=0.128 Sum_probs=32.9
Q ss_pred EEEEeCC----ChhHHHHHHHhcCCCccEEEeCCC--Ccchhc-CHHHHHHHCCCCccccEEEcCC
Q psy17906 115 AAAIDPV----EPHKILDAVNSHSAQLKHIWTTHH--HQDHAG-GNYDLVSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 115 aiLVDpG----~~~~i~~~i~~~g~~I~~VllTH~--H~DHig-Gl~~L~~~~p~~~~ipVy~~~~ 173 (174)
.+|||+- +.-.+.-.+....++|.+|..+++ +.+... -+..+.+.+.+..+||||.+..
T Consensus 3 ~viiDtD~g~DD~~Al~~~l~~~~i~i~gIt~~~Gn~~~~~~~~n~~~~l~~~g~~~~iPV~~G~~ 68 (312)
T PF01156_consen 3 KVIIDTDPGIDDALALALALASPEIEILGITTVFGNVSVEQAARNALRLLELAGGRDDIPVYKGAD 68 (312)
T ss_dssp EEEEEE--SHHHHHHHHHHHHHTTEEEEEEEE-SSSS-HHHHHHHHHHHHHHTTTCSTS-EEEEES
T ss_pred EEEEECCCChhHHHHHHHHHhCCCcEEEEEEEecCCcchHHHHHHHHHHHHHhcCCCccceeecch
Confidence 4566664 233333444555678999999997 334433 3456677773344588998653
No 104
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.50 E-value=55 Score=28.25 Aligned_cols=39 Identities=23% Similarity=0.409 Sum_probs=30.2
Q ss_pred EEEEEECCCCeEEEEeCCChhHHHHHHHhcCCCccEEEeCCC
Q psy17906 104 MYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHH 145 (174)
Q Consensus 104 ~YLI~de~t~~aiLVDpG~~~~i~~~i~~~g~~I~~VllTH~ 145 (174)
-.++.|| -+--+||-...++.+.+.+...+.+-|++||-
T Consensus 169 eVlLmDE---PtSALDPIsT~kIEeLi~eLk~~yTIviVTHn 207 (253)
T COG1117 169 EVLLMDE---PTSALDPISTLKIEELITELKKKYTIVIVTHN 207 (253)
T ss_pred cEEEecC---cccccCchhHHHHHHHHHHHHhccEEEEEeCC
Confidence 4566666 34567888778888888888788999999995
No 105
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=25.14 E-value=90 Score=27.22 Aligned_cols=46 Identities=20% Similarity=0.039 Sum_probs=29.8
Q ss_pred CCeEEEEeCC--C---hhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHH
Q psy17906 112 SKHAAAIDPV--E---PHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVS 158 (174)
Q Consensus 112 t~~aiLVDpG--~---~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~ 158 (174)
++.++|||.. . .....+.+++.|.+--.++.||.-.-- .+...|.+
T Consensus 202 g~~viivDDii~TG~Tl~~a~~~l~~~Ga~~v~~~~tH~v~~~-~a~~~l~~ 252 (302)
T PLN02369 202 GKVAIMVDDMIDTAGTITKGAALLHQEGAREVYACATHAVFSP-PAIERLSS 252 (302)
T ss_pred CCEEEEEcCcccchHHHHHHHHHHHhCCCCEEEEEEEeeeeCH-HHHHHHHh
Confidence 4567777776 2 334456677788877789999986644 33444544
No 106
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=24.66 E-value=67 Score=28.09 Aligned_cols=46 Identities=15% Similarity=0.182 Sum_probs=28.8
Q ss_pred CCeEEEEeCC-----ChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHH
Q psy17906 112 SKHAAAIDPV-----EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVS 158 (174)
Q Consensus 112 t~~aiLVDpG-----~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~ 158 (174)
++.++|||.. ......+.+++.|.+--.++.||.-... ++...+.+
T Consensus 208 g~~vliVDDii~TG~T~~~a~~~l~~~Ga~~v~~~~tH~i~~~-~a~~~l~~ 258 (309)
T PRK01259 208 GRDCILVDDMIDTAGTLCKAAEALKERGAKSVYAYATHPVLSG-GAIERIEN 258 (309)
T ss_pred CCEEEEEecccCcHHHHHHHHHHHHccCCCEEEEEEEeeeCCh-HHHHHHhc
Confidence 3456666655 3444566777888887789999986643 23344433
No 107
>cd02647 nuc_hydro_TvIAG nuc_hydro_ TvIAG: Nucleoside hydrolases similar to the Inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. Nucleoside hydrolases vary in their substrate specificity. This group contains eukaryotic and bacterial proteins similar to the purine specific inosine-adenosine-guanosine-preferring nucleoside hydrolase (IAG-NH) from T. vivax. T. vivax IAG-NH is of the order of a thousand to ten thousand fold more specific towards the naturally occurring purine nucleosides, than towards the pyrimidine nucleosides.
Probab=24.42 E-value=1.9e+02 Score=25.32 Aligned_cols=58 Identities=17% Similarity=0.063 Sum_probs=32.0
Q ss_pred EEEeCC----ChhHHHHHHHhcCCCccEEEeCC--CCcc--hh-cCHHHHHHHCCCCccccEEEcCC
Q psy17906 116 AAIDPV----EPHKILDAVNSHSAQLKHIWTTH--HHQD--HA-GGNYDLVSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 116 iLVDpG----~~~~i~~~i~~~g~~I~~VllTH--~H~D--Hi-gGl~~L~~~~p~~~~ipVy~~~~ 173 (174)
+|||+- +.-.+.-.+....++|.+|..+| +... +. .-...+.+.+....+||||.+..
T Consensus 3 vIiDtD~g~DDa~Al~~al~~p~i~l~gIt~v~~~GN~~~~~~~~na~~ll~~~g~~~dIPV~~Ga~ 69 (312)
T cd02647 3 VIFDHDGNVDDLVALLLLLKNEKVDLKGIGVSGIDADCYVEPAVSVTRKLIDRLGQRDAIPVGKGGS 69 (312)
T ss_pred EEEeCCCCchHHHHHHHHhhCCCcceEEEEEecCcCCccHHHHHHHHHHHHHHhCCCCCCCEEeCCC
Confidence 556654 23333333444567888999994 4333 11 22335566663215688998754
No 108
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=24.38 E-value=1.4e+02 Score=27.24 Aligned_cols=46 Identities=15% Similarity=0.110 Sum_probs=32.0
Q ss_pred CeEEEEeCC-----ChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHHHC
Q psy17906 113 KHAAAIDPV-----EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRY 160 (174)
Q Consensus 113 ~~aiLVDpG-----~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~~~ 160 (174)
+.++|||.- ......+.+++.|.+--+++.||+=+- .|+..|.+.+
T Consensus 265 r~vIIVDDII~TG~Tl~~aa~~Lk~~GA~~V~~~~tH~vf~--~a~~~l~~~~ 315 (382)
T PRK06827 265 KDVLIVDDMIASGGSMIDAAKELKSRGAKKIIVAATFGFFT--NGLEKFDKAY 315 (382)
T ss_pred CEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEEEEeecCh--HHHHHHHhhc
Confidence 455555554 344556677888887778999998755 6777777664
No 109
>cd00455 nuc_hydro nuc_hydro: Nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains eukaryotic, bacterial and archeal proteins similar to the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium, the purine-specific inosine-adenosine-guanosine-preferring nucleoside hydrolase from Trypanosoma vivax and, pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases such as URH1 from Saccharomyces cerevisiae, RihA and RihB from Escherichia coli. Nucleoside hydrolases are of interest as a target for antiprotozoan drugs as, no nucleoside hydrolase activity or genes encoding these enzymes have been detected in humans and, parasitic protozoans lack de novo purine synthesis relying on nucleosid
Probab=23.83 E-value=1.3e+02 Score=25.85 Aligned_cols=44 Identities=18% Similarity=0.085 Sum_probs=28.1
Q ss_pred HHHhcCCCccEEEeCCCCcc--h-hcCHHHHHHHCCCCccccEEEcCC
Q psy17906 129 AVNSHSAQLKHIWTTHHHQD--H-AGGNYDLVSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 129 ~i~~~g~~I~~VllTH~H~D--H-igGl~~L~~~~p~~~~ipVy~~~~ 173 (174)
.+....++|.+|-.+++-.+ + +.-+..+.+.+ +..+||||.+..
T Consensus 18 ~l~~~~~~l~gIt~~~Gn~~~~~~~~n~~~~l~~~-g~~~iPV~~G~~ 64 (295)
T cd00455 18 ALLHPEIELVGIVATYGNVTLEQATQNAAYLLELL-GRLDIPVYAGAT 64 (295)
T ss_pred HhcCCCceEEEEEeccCCccHHHHHHHHHHHHHHh-CCCCCCEeCCCC
Confidence 34445678999999987665 2 23344566666 344688997653
No 110
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=23.50 E-value=75 Score=27.33 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=27.9
Q ss_pred CeEEEEeCC-----ChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHH
Q psy17906 113 KHAAAIDPV-----EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVS 158 (174)
Q Consensus 113 ~~aiLVDpG-----~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~ 158 (174)
+.++|||.. ......+.+++.|.+--.++.||.-... ++...+.+
T Consensus 205 k~VlIVDDIi~TG~Tl~~aa~~Lk~~GA~~V~~~~~H~i~~~-~a~~~l~~ 254 (285)
T PRK00934 205 KDVLIVDDIISTGGTMATAIKILKEQGAKKVYVACVHPVLVG-DAILKLYN 254 (285)
T ss_pred CEEEEEcCccccHHHHHHHHHHHHHCCCCEEEEEEEeeccCc-HHHHHHHh
Confidence 455666555 3455667788888877788899864332 23444444
No 111
>PRK10443 rihA ribonucleoside hydrolase 1; Provisional
Probab=23.10 E-value=1.7e+02 Score=25.39 Aligned_cols=58 Identities=16% Similarity=0.160 Sum_probs=33.7
Q ss_pred EEEEeCC----ChhHHHHHHHhcCCCccEEEeCCCCcchhcC---HHHHHHHCCCCccccEEEcCC
Q psy17906 115 AAAIDPV----EPHKILDAVNSHSAQLKHIWTTHHHQDHAGG---NYDLVSRYPHLKEHPVYGLKM 173 (174)
Q Consensus 115 aiLVDpG----~~~~i~~~i~~~g~~I~~VllTH~H~DHigG---l~~L~~~~p~~~~ipVy~~~~ 173 (174)
.+|||+- +.-.+.-++....+++.+|-.+|+-..--.+ +..+.+.. +..+||||.+..
T Consensus 4 ~vIiDtD~g~DDa~AL~~al~~~~~~l~gIt~v~Gn~~~~~~~~na~~~l~~~-g~~diPV~~Ga~ 68 (311)
T PRK10443 4 PIILDCDPGHDDAIALVLALASPELDVKAVTTSAGNQTPEKTLRNALRMLTLL-NRTDIPVAGGAV 68 (311)
T ss_pred cEEEECCCChHHHHHHHHHhcCCCceEEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCCCcEEeCCC
Confidence 4666664 2222333344456788899999875543222 34456666 444688998753
No 112
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=22.78 E-value=98 Score=22.05 Aligned_cols=25 Identities=12% Similarity=0.175 Sum_probs=17.0
Q ss_pred EEeCC-ChhHHHHHHHhcCCCccEEE
Q psy17906 117 AIDPV-EPHKILDAVNSHSAQLKHIW 141 (174)
Q Consensus 117 LVDpG-~~~~i~~~i~~~g~~I~~Vl 141 (174)
++|+| ....+.+.+++.|.+.-.+.
T Consensus 97 vi~tG~Tl~~~~~~L~~~g~~~v~~~ 122 (125)
T PF00156_consen 97 VIDTGGTLKEAIELLKEAGAKVVGVA 122 (125)
T ss_dssp EESSSHHHHHHHHHHHHTTBSEEEEE
T ss_pred eEcccHHHHHHHHHHHhCCCcEEEEE
Confidence 56667 56677788888887654443
No 113
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=22.57 E-value=88 Score=27.29 Aligned_cols=45 Identities=16% Similarity=0.075 Sum_probs=27.2
Q ss_pred CeEEEEeCC-----ChhHHHHHHHhcCCCccEEEeCCCCcchhcCHHHHHH
Q psy17906 113 KHAAAIDPV-----EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVS 158 (174)
Q Consensus 113 ~~aiLVDpG-----~~~~i~~~i~~~g~~I~~VllTH~H~DHigGl~~L~~ 158 (174)
+.++|||.. ......+.+++.|.+--.++.||+=... .+...|.+
T Consensus 202 r~viIVDDIi~TG~Tl~~aa~~Lk~~Ga~~I~~~~tH~v~~~-~a~~~l~~ 251 (304)
T PRK03092 202 RTCVLVDDMIDTGGTIAGAVRALKEAGAKDVIIAATHGVLSG-PAAERLKN 251 (304)
T ss_pred CEEEEEccccCcHHHHHHHHHHHHhcCCCeEEEEEEcccCCh-HHHHHHHH
Confidence 455555554 3445566777788866678889985542 23445543
No 114
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=22.45 E-value=1.2e+02 Score=27.36 Aligned_cols=46 Identities=9% Similarity=-0.031 Sum_probs=32.7
Q ss_pred hhHHHHHHHh-cCCCccEEEeCCCCcchhcC-HHHHHHHCCCCccccEEEc
Q psy17906 123 PHKILDAVNS-HSAQLKHIWTTHHHQDHAGG-NYDLVSRYPHLKEHPVYGL 171 (174)
Q Consensus 123 ~~~i~~~i~~-~g~~I~~VllTH~H~DHigG-l~~L~~~~p~~~~ipVy~~ 171 (174)
.+++.+.++. .+.+.-.|=+.|+|.++.-. +.++++.||+.. |+++
T Consensus 110 ~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~---vIaG 157 (346)
T PRK05096 110 FEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKT---ICAG 157 (346)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCc---EEEe
Confidence 4555555553 35666666689999999876 788888898776 7765
No 115
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=21.92 E-value=2.8e+02 Score=21.28 Aligned_cols=54 Identities=17% Similarity=0.142 Sum_probs=32.3
Q ss_pred EEEEeCC---ChhHHHHHHHhcCCCccEEEeCC---CCcchhcCHHHHHHHCCCCccccEEEc
Q psy17906 115 AAAIDPV---EPHKILDAVNSHSAQLKHIWTTH---HHQDHAGGNYDLVSRYPHLKEHPVYGL 171 (174)
Q Consensus 115 aiLVDpG---~~~~i~~~i~~~g~~I~~VllTH---~H~DHigGl~~L~~~~p~~~~ipVy~~ 171 (174)
.=+||.| .++.+.+.+.+.+.++ |.+|- .|..++..+..+.+.. +..+++|+.+
T Consensus 28 feVidLG~~v~~e~~v~aa~~~~adi--VglS~L~t~~~~~~~~~~~~l~~~-gl~~v~vivG 87 (128)
T cd02072 28 FNVVNLGVLSPQEEFIDAAIETDADA--ILVSSLYGHGEIDCKGLREKCDEA-GLKDILLYVG 87 (128)
T ss_pred CEEEECCCCCCHHHHHHHHHHcCCCE--EEEeccccCCHHHHHHHHHHHHHC-CCCCCeEEEE
Confidence 3478888 5678888887775543 33332 4556666666665554 4434556654
No 116
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=21.73 E-value=2.8e+02 Score=23.04 Aligned_cols=79 Identities=14% Similarity=0.138 Sum_probs=41.0
Q ss_pred ccccc-ceEEEEecccCCeeEEEEEECCCCeEEEEeCC-ChhHHHHHHHhcCCCccEEEeCCCCcchhc--------CHH
Q psy17906 85 THDFG-KYTVDLIPALKDNYMYLVVDKASKHAAAIDPV-EPHKILDAVNSHSAQLKHIWTTHHHQDHAG--------GNY 154 (174)
Q Consensus 85 ~~~~~-~M~I~~ip~~~~Ny~YLI~de~t~~aiLVDpG-~~~~i~~~i~~~g~~I~~VllTH~H~DHig--------Gl~ 154 (174)
.++.+ .++|-+++....+..........+..-+.|+. ...+..+.+++.+.++ -|+++|.-.|.-. ...
T Consensus 132 i~~~~~g~kVgviG~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~v~~lr~~~~D~-IIvl~H~g~~~~~~~~~~~~~~~~ 210 (277)
T cd07410 132 ILERDVGVKVGIIGLTTPQIPNWEKPNLIGGLKFTDPVETAKKYVPKLRAEGADV-VVVLAHGGFERDLEESLTGENAAY 210 (277)
T ss_pred EEEecCCCEEEEEecCCcccccccCcccCCCcEEcCHHHHHHHHHHHHHHcCCCE-EEEEecCCcCCCcccccCCccHHH
Confidence 34445 67777776533221111111111233455555 3455566666656665 5889998666531 134
Q ss_pred HHHHHCCCCc
Q psy17906 155 DLVSRYPHLK 164 (174)
Q Consensus 155 ~L~~~~p~~~ 164 (174)
.|++.+|+..
T Consensus 211 ~la~~~~~vD 220 (277)
T cd07410 211 ELAEEVPGID 220 (277)
T ss_pred HHHhcCCCCc
Confidence 6777776654
No 117
>PRK14525 rpsP 30S ribosomal protein S16; Provisional
Probab=20.88 E-value=44 Score=24.38 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=30.1
Q ss_pred hHHHHHhhcCCCCcccceeechhhhhhhhcCCCCCcccc
Q psy17906 14 PLLKQCMSLLPPATPFLFKFNYLARFSTMANDDFKPVTH 52 (174)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~ 52 (174)
.++.++=.|.|...+.+.++|. +|+..|-+.+=+|+-.
T Consensus 32 k~IE~lG~YnP~~~~~~i~ln~-eri~~WL~~GAqpT~t 69 (88)
T PRK14525 32 KYLEDVGIYDPTKRPERIELKV-ERIEHWLKAGAKPSQT 69 (88)
T ss_pred CceeEEecccCCCCCceEEEcH-HHHHHHHHCCCccCHH
Confidence 3566677788877777889999 9999999888887643
No 118
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=20.87 E-value=1.9e+02 Score=26.99 Aligned_cols=47 Identities=13% Similarity=-0.068 Sum_probs=34.8
Q ss_pred ChhHHHHHHHhcCCCccEEEeCCCCcchhcC-HHHHHHHCCCCccccEEEc
Q psy17906 122 EPHKILDAVNSHSAQLKHIWTTHHHQDHAGG-NYDLVSRYPHLKEHPVYGL 171 (174)
Q Consensus 122 ~~~~i~~~i~~~g~~I~~VllTH~H~DHigG-l~~L~~~~p~~~~ipVy~~ 171 (174)
+.....+.+-+.|.+.-.+=.||.|...... +.++++.||+++ |.++
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~---vi~g 272 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVP---IVAG 272 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCe---EEEe
Confidence 3344555566678888888899999988876 677888887666 7765
Done!