RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17906
(174 letters)
>gnl|CDD|178088 PLN02469, PLN02469, hydroxyacylglutathione hydrolase.
Length = 258
Score = 97.1 bits (242), Expect = 3e-25
Identities = 38/79 (48%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 96 IPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYD 155
+P L+DNY YL++D+++K AA +DPV+P K+L A + H A++K + TTHHH DHAGGN
Sbjct: 6 VPCLEDNYAYLIIDESTKDAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEK 65
Query: 156 LVSRYPHLKEHPVYGLKMD 174
+ P +K VYG +D
Sbjct: 66 IKKLVPGIK---VYGGSLD 81
>gnl|CDD|234201 TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of
this protein family are hydroxyacylglutathione
hydrolase, a detoxification enzyme known as glyoxalase
II. It follows lactoylglutathione lyase, or glyoxalase
I, and acts to remove the toxic metabolite methylglyoxal
and related compounds. This protein belongs to the
broader metallo-beta-lactamase family (pfam00753)
[Cellular processes, Detoxification].
Length = 248
Score = 85.3 bits (212), Expect = 8e-21
Identities = 33/75 (44%), Positives = 43/75 (57%), Gaps = 5/75 (6%)
Query: 96 IPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYD 155
IPAL DNY++L+ D AA +DP E +LDA+ + L I THHH DH GG +
Sbjct: 4 IPALSDNYIWLLHDPD-GQAAVVDPGEAEPVLDALEARGLTLTAILLTHHHHDHVGGVAE 62
Query: 156 LVSRYPHLKEHPVYG 170
L+ +P PVYG
Sbjct: 63 LLEAFP----APVYG 73
>gnl|CDD|215223 PLN02398, PLN02398, hydroxyacylglutathione hydrolase.
Length = 329
Score = 69.1 bits (169), Expect = 2e-14
Identities = 29/68 (42%), Positives = 44/68 (64%)
Query: 93 VDLIPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGG 152
++L+P LKDNY YL+ D+ + +DP E ++DA++ + L +I THHH DH GG
Sbjct: 78 IELVPCLKDNYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGG 137
Query: 153 NYDLVSRY 160
N +L +RY
Sbjct: 138 NLELKARY 145
>gnl|CDD|182327 PRK10241, PRK10241, hydroxyacylglutathione hydrolase; Provisional.
Length = 251
Score = 62.9 bits (153), Expect = 2e-12
Identities = 29/75 (38%), Positives = 47/75 (62%), Gaps = 4/75 (5%)
Query: 96 IPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYD 155
IPA DNY++++ D+A + +DP E +L+A+ ++ Q + I+ THHH DH GG +
Sbjct: 6 IPAFDDNYIWVLNDEAGR-CLIVDPGEAEPVLNAIAENNWQPEAIFLTHHHHDHVGGVKE 64
Query: 156 LVSRYPHLKEHPVYG 170
LV ++P + VYG
Sbjct: 65 LVEKFPQIV---VYG 76
>gnl|CDD|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases
[General function prediction only].
Length = 252
Score = 44.8 bits (105), Expect = 6e-06
Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 5/79 (6%)
Query: 90 KYTVDLIPALKDNYMYLVVDKASKHAAAIDPVEP----HKILDAVNSHSAQLKHIWTTHH 145
+ L N +YL+VD A ID +L+A+ + + I TH
Sbjct: 13 TAFPIGVGPLSGNSVYLLVDG-EGGAVLIDTGLGDADAEALLEALAALGLDVDAILLTHG 71
Query: 146 HQDHAGGNYDLVSRYPHLK 164
H DH GG L +
Sbjct: 72 HFDHIGGAAVLKEAFGAAP 90
>gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily. Apart
from the beta-lactamases a number of other proteins
contain this domain. These proteins include
thiolesterases, members of the glyoxalase II family,
that catalyse the hydrolysis of S-D-lactoyl-glutathione
to form glutathione and D-lactic acid and a competence
protein that is essential for natural transformation in
Neisseria gonorrhoeae and could be a transporter
involved in DNA uptake. Except for the competence
protein these proteins bind two zinc ions per molecule
as cofactor.
Length = 177
Score = 40.6 bits (95), Expect = 1e-04
Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 103 YMYLVVDKASKHAAAIDPV--EPHKILDAVNSHS-AQLKHIWTTHHHQDHAGGNYDLVSR 159
YLV D A ID E +L + ++ I TH H DH GG +L+
Sbjct: 1 NSYLVRDD--GGAILIDTGPGEAEDLLAELKKLGPKKIDAIILTHGHPDHIGGLPELLEA 58
Query: 160 YPHLKEHPVYG 170
PVY
Sbjct: 59 P----GAPVYA 65
>gnl|CDD|216099 pfam00753, Lactamase_B, Metallo-beta-lactamase superfamily.
Length = 148
Score = 39.6 bits (92), Expect = 1e-04
Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 6/71 (8%)
Query: 101 DNYMYLVVDKASKHAAAIDPVEP----HKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDL 156
+ YLV A ID +L + + I TH H DH GG +L
Sbjct: 5 GSNSYLVEGD--GGAVLIDTGLGADDALLLLALLGLDPKDIDAIILTHAHADHIGGLPEL 62
Query: 157 VSRYPHLKEHP 167
Sbjct: 63 KEATGAPVVAA 73
>gnl|CDD|236924 PRK11539, PRK11539, ComEC family competence protein; Provisional.
Length = 755
Score = 31.9 bits (73), Expect = 0.16
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 126 ILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYP 161
I+ + H + I +H H DH GG L+ +P
Sbjct: 541 IIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWP 576
>gnl|CDD|223503 COG0426, FpaA, Uncharacterized flavoproteins [Energy production and
conversion].
Length = 388
Score = 31.1 bits (71), Expect = 0.23
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 105 YLVVDKASKHAAAIDPVEPH---KILDAVNSHS--AQLKHIWTTHHHQDHAGGNYDLVSR 159
YL+V A ID V + L+ ++ + ++ +I H DH+G +L+
Sbjct: 39 YLIVGD---KTALIDTVGEKFFDEYLENLSKYIDPKEIDYIIVNHTEPDHSGSLPELLEL 95
Query: 160 YPHLK 164
P+ K
Sbjct: 96 APNAK 100
>gnl|CDD|226883 COG4477, EzrA, Negative regulator of septation ring formation [Cell
division and chromosome partitioning].
Length = 570
Score = 30.0 bits (68), Expect = 0.63
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 119 DPVEPHKILDAVNSHSAQLKHI 140
D +E ++L+ H L+ I
Sbjct: 191 DYIEAREVLEEAEEHMIALRSI 212
>gnl|CDD|178547 PLN02962, PLN02962, hydroxyacylglutathione hydrolase.
Length = 251
Score = 29.4 bits (66), Expect = 0.97
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 103 YMYLVVDKA--SKHAAAIDPVEP--HKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVS 158
Y YL+ D + K A IDPV+ + L V +L + TH H DH G L +
Sbjct: 24 YTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKT 83
Query: 159 RYPHLK 164
+ P +K
Sbjct: 84 KLPGVK 89
>gnl|CDD|225212 COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase
superfamily) [General function prediction only].
Length = 293
Score = 28.1 bits (63), Expect = 2.6
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 135 AQLKHIWTTHHHQDHAGGNYDLVSRYPH 162
+L + TH DH GG +++
Sbjct: 89 RKLDQLILTHPDADHIGGLDEVLKTIKV 116
>gnl|CDD|219673 pfam07970, COPIIcoated_ERV, Endoplasmic reticulum vesicle
transporter. This family is conserved from plants and
fungi to humans. Erv46 works in close conjunction with
Erv41 and together they form a complex which cycles
between the endoplasmic reticulum and Golgi complex.
Erv46-41 interacts strongly with the endoplasmic
reticulum glucosidase II. Mammalian glucosidase II
comprises a catalytic alpha-subunit and a 58 kDa beta
subunit, which is required for ER localisation. All
proteins identified biochemically as Erv41p-Erv46p
interactors are localised to the early secretory pathway
and are involved in protein maturation and processing in
the ER and/or sorting into COPII vesicles for transport
to the Golgi.
Length = 222
Score = 27.3 bits (61), Expect = 4.1
Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 9/59 (15%)
Query: 46 DFKPVTHY---FRHEENHFSHAFGHERKPAVTHEFDNGEKRVTHDFGK----YTVDLIP 97
D T F H NH S FG E VT+ D K V D G Y + ++P
Sbjct: 88 DLSLFTDEKLNFSHTINHLS--FGEEFPGGVTNPLDGTTKFVQTDKGYHMYSYFLKVVP 144
>gnl|CDD|232940 TIGR00361, ComEC_Rec2, DNA internalization-related competence
protein ComEC/Rec2. Apparant orthologs are found in 5
species so far (Haemophilus influenzae, Escherichia
coli, Bacillus subtilis, Neisseria gonorrhoeae,
Streptococcus pneumoniae), of which all but E. coli are
model systems for the study of competence for natural
transformation. This protein is a predicted multiple
membrane-spanning protein likely to be involved in DNA
internalization. In a large number of bacterial species
not known to exhibit competence, this protein is
replaced by a half-length N-terminal homolog of unknown
function, modelled by the related model ComEC_N-term.
The role for this protein in species that are not
naturally transformable is unknown [Cellular processes,
DNA transformation].
Length = 662
Score = 27.6 bits (61), Expect = 4.3
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 126 ILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLK 164
I+ + + +L+ + +H QDH GG ++ +P +
Sbjct: 480 IIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHPVKR 518
>gnl|CDD|171855 PRK13043, PRK13043, superantigen-like protein; Reviewed.
Length = 241
Score = 26.2 bits (57), Expect = 8.4
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 76 EFDNGEKRVTHDFGKYTVDLIPALK 100
EF+ G+ ++T D YT+DL LK
Sbjct: 193 EFNKGQIKITADGNNYTIDLSKKLK 217
>gnl|CDD|131508 TIGR02455, TreS_stutzeri, trehalose synthase, Pseudomonas stutzeri
type. Trehalose synthase catalyzes a one-step
conversion of maltose to trehalose. This is an
alternative to the OtsAB and TreYZ pathways. This family
includes a characterized example from Pseudomonas
stutzeri plus very closely related sequences from other
Pseudomonads. Cutoff scores are set to find a more
distantly related sequence from Desulfovibrio vulgaris,
likely to be functionally equivalent, between trusted
and noise limits [Energy metabolism, Biosynthesis and
degradation of polysaccharides, Cellular processes,
Adaptations to atypical conditions].
Length = 688
Score = 26.5 bits (58), Expect = 8.5
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 8/56 (14%)
Query: 114 HAAAIDPVEPHKILDAVNSH---SAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEH 166
HA IDP ++ A+ +H + +L H WT H H + L HL+EH
Sbjct: 386 HAFGIDPAS---LIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPG--GHLREH 436
>gnl|CDD|163212 TIGR03307, PhnP, phosphonate metabolism protein PhnP. This family
of proteins found in operons encoding phosphonate C-P
lyase systems as is observed in E. coli and is a member
of the metallo-beta-lactamase superfamily (pfam00753).
As defined by this model, all instances of this protein
are associated with the C-P lyase, but not all genomes
containing the C-P lyase system contain phnP.
Length = 238
Score = 26.2 bits (58), Expect = 8.8
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 137 LKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYG 170
L+ I TH+H DH G + L R+ + PVYG
Sbjct: 57 LQAILLTHYHMDHVQGLFPL--RWGVGEPIPVYG 88
>gnl|CDD|236615 PRK09709, PRK09709, exonuclease VIII; Reviewed.
Length = 877
Score = 26.5 bits (58), Expect = 9.5
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 21 SLLPPATPFLFKFNYLARFSTMANDDFKPVTHYFRHEENHFSHAFGHERKPAVT 74
++L P + +LA+ + KPVTH R + A E PAVT
Sbjct: 128 NMLLPISGQELPIRWLAQHGSE-----KPVTHVSRDDLQALHIA-RAEELPAVT 175
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.137 0.431
Gapped
Lambda K H
0.267 0.0697 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,099,130
Number of extensions: 822358
Number of successful extensions: 654
Number of sequences better than 10.0: 1
Number of HSP's gapped: 652
Number of HSP's successfully gapped: 34
Length of query: 174
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 84
Effective length of database: 6,945,742
Effective search space: 583442328
Effective search space used: 583442328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.4 bits)