RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17906
(174 letters)
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase);
metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens}
SCOP: d.157.1.2 PDB: 1qh3_A*
Length = 260
Score = 114 bits (287), Expect = 5e-32
Identities = 41/79 (51%), Positives = 52/79 (65%), Gaps = 3/79 (3%)
Query: 92 TVDLIPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAG 151
V+++PAL DNYMYLV+D +K AA +DPV+P K++DA H +L + TTHHH DHAG
Sbjct: 2 KVEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAG 61
Query: 152 GNYDLVSRYPHLKEHPVYG 170
GN LV L VYG
Sbjct: 62 GNEKLVKLESGL---KVYG 77
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative,
CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear
center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2
PDB: 2q42_A
Length = 254
Score = 108 bits (271), Expect = 1e-29
Identities = 32/83 (38%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 92 TVDLIPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAG 151
++L+P LKDNY Y++ D+ + +DP E I+D++ L +I THHH DH G
Sbjct: 2 QIELVPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTG 61
Query: 152 GNYDLVSRYPHLKEHPVYGLKMD 174
GN +L RY V G MD
Sbjct: 62 GNLELKDRYG----AKVIGSAMD 80
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily,
salmonella typhimurium LT2; 1.45A {Salmonella
typhimurium} SCOP: d.157.1.2
Length = 258
Score = 105 bits (264), Expect = 1e-28
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 87 DFGKYTVDLIPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHH 146
D G ++ IPA +DNY++++ + +DP E +L A+ H + I+ THHH
Sbjct: 4 DIGSMNLNSIPAFQDNYIWVLTND-EGRCVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHH 62
Query: 147 QDHAGGNYDLVSRYPHLKEHPVYG 170
DH GG +L+ +P + VYG
Sbjct: 63 HDHVGGVKELLQHFPQMT---VYG 83
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain,
hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB:
2p1e_A*
Length = 311
Score = 98.3 bits (245), Expect = 2e-25
Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 13/92 (14%)
Query: 92 TVDLIPALKDNYMYLVVDKASKHAAAID-PVEPHKILDAVNSHSA---------QLKHIW 141
+V ++P LKDN+ YL+ D + AA+D + IL + H I
Sbjct: 30 SVTVVPTLKDNFSYLINDHTTHTLAAVDVNADYKPILTYIEEHLKQQGNADVTYTFSTIL 89
Query: 142 TTHHHQDHAGGNYDLVSRYPHLKEH---PVYG 170
+TH H DH+GGN L + + V G
Sbjct: 90 STHKHWDHSGGNAKLKAELEAMNSTVPVVVVG 121
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella
enterica}
Length = 210
Score = 63.8 bits (156), Expect = 3e-13
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 101 DNYMYLVVDKASKHAAAIDPV-EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSR 159
L+ + ++ AA +DP + KI V++ L I TH H DH G +L
Sbjct: 12 SQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDASGVTLMQILLTHGHLDHVGAASELAQH 71
Query: 160 YPHLKEHPVYGLKMD 174
Y PV G + +
Sbjct: 72 YG----VPVIGPEKE 82
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A
{Thermus thermophilus} PDB: 2zzi_A
Length = 207
Score = 58.7 bits (143), Expect = 2e-11
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 101 DNYMYLVVDKASKHAAAIDP-VEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSR 159
YLV + IDP EP K+L + I TH H DH G LV
Sbjct: 12 QENAYLVET--GEGPVLIDPGDEPEKLLALFQTTGLIPLAILLTHAHFDHVGAVAPLVEA 69
Query: 160 Y 160
Sbjct: 70 L 70
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
2.70A {Alicyclobacillus acidocaldarius subsp}
Length = 474
Score = 50.0 bits (119), Expect = 7e-08
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 102 NYMYLVVDKASKHAAAIDPV-EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSR 159
+ YLV + + A IDP + L ++ TH H D G ++ R
Sbjct: 16 HASYLVGCQETGEACVIDPARDVEPYLLTAKREGLRIVAALETHIHADFVSGAREMADR 74
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
2.10A {Staphylococcus aureus}
Length = 466
Score = 48.1 bits (114), Expect = 3e-07
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 102 NYMYLVVDKASKHAAAIDPV-EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSR 159
YL+ + + A IDP+ + + + + H TH H D A G D+ +
Sbjct: 37 QASYLIGCQKTGEAMIIDPIRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIK 95
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic
encephalopathy, ETHE1, structural genomics, protein
structure initiative; 1.48A {Arabidopsis thaliana}
Length = 245
Score = 45.7 bits (109), Expect = 1e-06
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 103 YMYLVVDKA--SKHAAAIDPVEPH--KILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVS 158
+ YL+ D + K A IDPV+ + L ++ +L + TH H DH G L +
Sbjct: 16 FTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKT 75
Query: 159 RYP 161
+ P
Sbjct: 76 KLP 78
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta
lactamase, mitochondria; 2.60A {Homo sapiens}
Length = 289
Score = 44.8 bits (106), Expect = 3e-06
Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%)
Query: 105 YLVVDKASKHAAAIDPVEPHK------ILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVS 158
YLV ID EP + A+ + ++ I TH H+DH+GG D+
Sbjct: 35 YLVGT--GPRRILIDTGEPAIPEYISCLKQALTEFNTAIQEIVVTHWHRDHSGGIGDICK 92
Query: 159 RYPH 162
+
Sbjct: 93 SINN 96
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.60A {Burkholderia pseudomallei}
Length = 298
Score = 44.7 bits (106), Expect = 3e-06
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 13/70 (18%)
Query: 103 YMYLVVDKASKHAAAIDPV-------------EPHKILDAVNSHSAQLKHIWTTHHHQDH 149
YL+ D S A ID V +++ V + A+++ + TH H DH
Sbjct: 18 ISYLLFDSGSGECALIDSVLDYDPKSGRTRTASADQLIARVAALGARVRWLLETHVHADH 77
Query: 150 AGGNYDLVSR 159
L +R
Sbjct: 78 LSAAPYLKTR 87
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two
monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A
{Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A*
1l9y_A
Length = 263
Score = 43.7 bits (103), Expect = 9e-06
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 8/68 (11%)
Query: 100 KDNYMYLVVDKASKHAAAIDPVEPH---KILDAVNSH---SAQLKHIWTTHHHQDHAGGN 153
D YL+V + I+ I ++ + K + +H H DHA G+
Sbjct: 23 DDLASYLIVT--PRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGS 80
Query: 154 YDLVSRYP 161
+ +
Sbjct: 81 ELIKQQTK 88
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme,
sulfonamide complex hydrolase-hydrolase inhibitor
complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB:
3lvz_A* 2gmn_A
Length = 294
Score = 43.8 bits (103), Expect = 9e-06
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 105 YLVVDKASKHAAAIDPVEPH---KILDAVNSH---SAQLKHIWTTHHHQDHAGGNYDLVS 158
Y++ S+ +D P I D + A +K I TH H DH GG ++
Sbjct: 58 YVIKT--SQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEIKK 115
Query: 159 RY 160
Sbjct: 116 ET 117
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor,
succinic acid inhibitor, I metallo-beta-lactamase,
hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa}
SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A
1wuo_A 1jje_A* 1ddk_A
Length = 228
Score = 39.4 bits (92), Expect = 2e-04
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 102 NYMYLVVDKASKHAAAID----PVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDL 156
+ + ++V+ A ID + K++ ++K ++H H D GG L
Sbjct: 34 HGLVVLVNAE---AYLIDTPFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWL 89
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone
signal, metallo-beta-lactamase FOL conserved
hypothetical protein; HET: EPE; 1.80A {Sulfolobus
tokodaii}
Length = 261
Score = 39.4 bits (92), Expect = 2e-04
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Query: 105 YLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYP 161
Y++ K ID + I A S +L +I TH H DH G +L+ Y
Sbjct: 23 YVMCG--EKLTVMIDAGVSNSI--ADFSFLDKLDYIVLTHLHIDHIGLLPELLQVYK 75
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic
resistance, binuclear zinc, hydrolase; 1.70A
{Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB:
2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A*
2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Length = 269
Score = 39.1 bits (91), Expect = 3e-04
Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 8/66 (12%)
Query: 101 DNYMYLVVDKASKHAAAIDPVEP---HKILDAVNSH---SAQLKHIWTTHHHQDHAGGNY 154
D LV A +D P +LD + + L+ I +H H DHAG
Sbjct: 37 DLTALLVQT--PDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVA 94
Query: 155 DLVSRY 160
+L R
Sbjct: 95 ELKRRT 100
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES;
1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB:
1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A
1hlk_A*
Length = 232
Score = 37.4 bits (87), Expect = 8e-04
Identities = 9/63 (14%), Positives = 19/63 (30%), Gaps = 7/63 (11%)
Query: 106 LVVDKASKHAAAIDPVEPHKILDAVNSHSAQ-LKHIWTTHHHQDHAGGNYDLVSRYPHLK 164
++D I+ + +++ V + H H D GG L +
Sbjct: 49 ALLD------TPINDAQTEMLVNWVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSY 102
Query: 165 EHP 167
+
Sbjct: 103 ANQ 105
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein,
SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A
2q0i_A 3dh8_A*
Length = 303
Score = 35.6 bits (82), Expect = 0.005
Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 7/66 (10%)
Query: 105 YLVVDKASKHAAAID---PVEPHKILDAVNSHS---AQLKHIWTTHHHQDHAGGNYDLVS 158
+L+ A ++ + + + +Q+ + TH H DH G L
Sbjct: 27 FLLRL-GEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLPYLCP 85
Query: 159 RYPHLK 164
R P+++
Sbjct: 86 RLPNVQ 91
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding;
HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A
3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A
Length = 227
Score = 35.4 bits (82), Expect = 0.005
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 7/49 (14%)
Query: 106 LVVDKASKHAAAIDPVEPHKILDAVNSHSAQ-LKHIWTTHHHQDHAGGN 153
VV A P ++ + S + + + T++H D AGGN
Sbjct: 35 TVVG------ATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGN 77
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT;
1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A
1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A
3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A
3kns_A 3knr_A 2bfz_A ...
Length = 227
Score = 35.1 bits (81), Expect = 0.005
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Query: 106 LVVDKASKHAAAIDPVEPHKILDAVNSHSAQ-LKHIWTTHHHQDHAGGN 153
++VD ++ D ++++ V + + + TH H D GG
Sbjct: 53 VLVD------SSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGI 95
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic,
hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella
pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A*
3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A
3zr9_A 3s0z_A 3pg4_A
Length = 270
Score = 35.3 bits (81), Expect = 0.005
Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 7/61 (11%)
Query: 104 MYLVVDKASKHAAAID----PVEPHKILDAVNSHSAQ-LKHIWTTHHHQDHAGGNYDLVS 158
+V D +D + +IL+ + + TH HQD GG L +
Sbjct: 77 GLIVRDG--GRVLVVDTAWTDDQTAQILNWIKQEINLPVALAVVTHAHQDKMGGMDALHA 134
Query: 159 R 159
Sbjct: 135 A 135
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance,
hydrolase; 1.65A {Chryseobacterium indologenes}
Length = 219
Score = 35.1 bits (81), Expect = 0.005
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 7/49 (14%)
Query: 106 LVVDKASKHAAAIDPVEPHKILDAVNSHSAQ-LKHIWTTHHHQDHAGGN 153
++ D + V+ ++D + + ++ TH H D AG
Sbjct: 43 VLFD------VPWEKVQYQSLMDTIKKRHNLPVVAVFATHSHDDRAGDL 85
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold.,
hydrolase; HET: MCO; 1.50A {Elizabethkingia
meningoseptica} SCOP: d.157.1.1
Length = 223
Score = 35.2 bits (81), Expect = 0.006
Identities = 10/63 (15%), Positives = 16/63 (25%), Gaps = 7/63 (11%)
Query: 106 LVVDKASKHAAAIDPVEPHKILDAVNSHSAQ-LKHIWTTHHHQDHAGGNYDLVSRYPHLK 164
+V+D + D + + + TH H D AGG
Sbjct: 39 VVID------CPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGKIGAKTY 92
Query: 165 EHP 167
Sbjct: 93 STK 95
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic
recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A
2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Length = 265
Score = 35.2 bits (81), Expect = 0.006
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 7/54 (12%)
Query: 105 YLVVDKASKHAAAID----PVEPHKILDAVNSHSAQ-LKHIWTTHHHQDHAGGN 153
+V D ID +L + + +TH H D GG
Sbjct: 71 LIVRDA--DELLLIDTAWGAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGV 122
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance,
acquired B3, drug binding; 1.40A {Pseudomonas
aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Length = 303
Score = 35.0 bits (80), Expect = 0.007
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 127 LDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRY 160
+ A+ ++ I +H H DHAG +L
Sbjct: 87 IRALGFRPEDVRAIVFSHEHFDHAGSLAELQKAT 120
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A
{Serratia fonticola} PDB: 3sd9_A
Length = 233
Score = 34.7 bits (80), Expect = 0.007
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 7/49 (14%)
Query: 106 LVVDKASKHAAAIDPVEPHKILDAVNSHSAQ-LKHIWTTHHHQDHAGGN 153
++ A P + + S + + T++H D AGGN
Sbjct: 38 TIIG------ATWTPETAETLYKEIRKVSPLPINEVINTNYHTDRAGGN 80
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus}
Length = 317
Score = 32.8 bits (75), Expect = 0.040
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 98 ALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGG 152
L+ +VD A AA +E L + +K I THHH DH G
Sbjct: 26 LLQGAGEVALVDTALGTRAARGALE--LHLAELGLCFQDVKTILLTHHHPDHYGL 78
>2p97_A Hypothetical protein; putative metal-dependent hydrolase,
structural genomics, JOI for structural genomics, JCSG;
HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP:
d.157.1.12
Length = 201
Score = 32.1 bits (73), Expect = 0.055
Identities = 8/60 (13%), Positives = 16/60 (26%), Gaps = 4/60 (6%)
Query: 101 DNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRY 160
D + + + IDPV + I + DH ++ +
Sbjct: 23 DFNGFAWIR--PEGNILIDPVALSNHDWKHLESLGGVVWI--VLTNSDHVRSAKEIADQT 78
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine
like domain, oxidore; HET: FMN; 1.70A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 2ohi_A* 2ohj_A*
Length = 404
Score = 32.2 bits (73), Expect = 0.068
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 105 YLVVDKASKHAAAIDPVEPHKI------LDAVNSHS--AQLKHIWTTHHHQDHAGGNYDL 156
YLV + A ID P ++ ++ +I H +DH+G +L
Sbjct: 38 YLV--CGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEKDHSGVLVEL 95
Query: 157 VSRYPHLK 164
R+P
Sbjct: 96 HRRFPEAP 103
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II;
metal-dependent hydrolases of the beta-lactamase
superfamily hydrolase; 2.10A {Thermoanaerobacter
tengcongensis}
Length = 284
Score = 30.8 bits (69), Expect = 0.17
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 135 AQLKHIWTTHHHQDHAGGNYDLVSRYPHLK 164
++K + TH H DH GG L+ R P +K
Sbjct: 67 GRIKKVVLTHGHYDHIGGLKGLLERNPEVK 96
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre,
flavoproteins, lactamase-fold; HET: FMN; 2.5A
{Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Length = 402
Score = 31.0 bits (70), Expect = 0.17
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 105 YLVVDKASKHAAAIDPVEPHK---ILDAVNSH--SAQLKHIWTTHHHQDHAGGNYDLVSR 159
YLV D+ D V+ +L + S ++ ++ H DHAG L+
Sbjct: 38 YLVEDE---KTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEA 94
Query: 160 YPHLK 164
K
Sbjct: 95 CQPEK 99
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.8 bits (69), Expect = 0.22
Identities = 26/128 (20%), Positives = 38/128 (29%), Gaps = 40/128 (31%)
Query: 5 RKISFLVYKPLLKQCMSLLPPATPFLFKFN--YLARFSTMANDDFKPVTHYFRHEENHFS 62
RK+ F LP A+P F+ L S + N D F ++
Sbjct: 412 RKLKFS---------NRFLPVASP----FHSHLLVPASDLINKDLVKNNVSFNAKDIQI- 457
Query: 63 HAFGHERKPAVTHEFDNGEKRVTHDFGKYTVDLIPALKDNYMYLVVD--KASKHAAAIDP 120
P V FD D + + + D + L V ++ A
Sbjct: 458 --------P-VYDTFDG------SDLRVLSGSISERIVDCIIRLPVKWETTTQFKA---- 498
Query: 121 VEPHKILD 128
H ILD
Sbjct: 499 --TH-ILD 503
Score = 30.4 bits (68), Expect = 0.35
Identities = 15/84 (17%), Positives = 30/84 (35%), Gaps = 14/84 (16%)
Query: 58 ENHFSHAFGHERKPAVTHEFDNGEKRVTHDFGKYTVDLIPALKDNYMYLVVDKASKHAAA 117
+NHF +G ++ N +T FG +++NY ++ +
Sbjct: 1650 DNHFKDTYGF----SILDIVINNPVNLTIHFGGEKG---KRIRENYSAMIFETIVDGK-- 1700
Query: 118 IDPVEPHKILDAVNSHSAQLKHIW 141
++ KI +N HS +
Sbjct: 1701 ---LKTEKIFKEINEHSTSY--TF 1719
Score = 30.0 bits (67), Expect = 0.50
Identities = 28/128 (21%), Positives = 37/128 (28%), Gaps = 47/128 (36%)
Query: 61 FSHAFGHERKPAVTHEFDNGEKRVT---HDFGKYTVDLIPALKDNYMYLVVDKASKHAAA 117
FS ERK ++ F V H L+PA LV + S +A
Sbjct: 409 FS-----ERKLKFSNRFL----PVASPFHS--HL---LVPASDLINKDLVKNNVSFNAKD 454
Query: 118 ID-PVE---------------PHKILDAVNSHSAQLKHIW--TTHHHQDHA-----GGNY 154
I PV +I+D + + W TT H GG
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK----WETTTQFKATHILDFGPGGAS 510
Query: 155 ---DLVSR 159
L R
Sbjct: 511 GLGVLTHR 518
Score = 29.6 bits (66), Expect = 0.58
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 18/75 (24%)
Query: 66 GHERKPAVTHEFDNGEKRVTHDFGKYTVDLIPALKDNYMYLVVDKASKHAAAIDPVEPHK 125
+E P + E + ++ G +P+ M L + ++ + V+ +
Sbjct: 310 CYEAYPNTSLPPSILEDSLENNEG------VPS----PM-LSISNLTQ-----EQVQDY- 352
Query: 126 ILDAVNSHSAQLKHI 140
++ NSH K +
Sbjct: 353 -VNKTNSHLPAGKQV 366
Score = 27.7 bits (61), Expect = 2.8
Identities = 35/196 (17%), Positives = 53/196 (27%), Gaps = 67/196 (34%)
Query: 8 SFLVYKP---------LLKQCMSLLPPATPFLFKFN-------YLARFS--TMANDDFKP 49
LV P L +Q +LP T + + +F + +
Sbjct: 19 VLLV--PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSK 76
Query: 50 VTHYF---RHEENHFSHAF--G---HERKPAVTHEFDNGEKRVTHDFGKYTVDLIPALKD 101
V + F + + G H A+ + E T K +LI
Sbjct: 77 VGQFDQVLNLCLTEFENCYLEGNDIH----ALAAKLL-QENDTTLVKTK---ELIKN--- 125
Query: 102 NYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHA--GG-----NY 154
Y+ +K D + AV +AQL A GG +Y
Sbjct: 126 ---YITARIMAKRP--FDKKSNSALFRAVGEGNAQL-----------VAIFGGQGNTDDY 169
Query: 155 -----DLVSRYPHLKE 165
DL Y L
Sbjct: 170 FEELRDLYQTYHVLVG 185
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate
utilization, alkylphosphonate uptake; 1.40A {Escherichia
coli} PDB: 3p2u_A
Length = 258
Score = 30.4 bits (69), Expect = 0.23
Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 136 QLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYG 170
+ TH+H DH G + L R+ PVYG
Sbjct: 68 SFQQFLLTHYHMDHVQGLFPL--RWGVGDPIPVYG 100
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Length = 414
Score = 30.2 bits (68), Expect = 0.29
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 105 YLVVDKASKHAAAIDPVEPHK---ILDAVNSH--SAQLKHIWTTHHHQDHAGGNYDLVSR 159
Y + D+ ID V+ L + + ++K++ H DHA D +
Sbjct: 44 YFIDDE---CPTVIDSVKYPFAEEWLSRIAACCPLDKIKYVVMNHAEGDHASSLKDHYHK 100
Query: 160 YPHLK 164
+ +
Sbjct: 101 FTNAT 105
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z,
hydrolase, metal- binding, endonuclease, tRNA
processing, zinc; 2.9A {Escherichia coli} SCOP:
d.157.1.7
Length = 306
Score = 30.1 bits (68), Expect = 0.29
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 135 AQLKHIWTTHHHQDHAGGNYDLVSRYPHLK-EHPVY 169
+L I+ +H H DH G L+ P+
Sbjct: 56 GKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLT 91
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc
hydrolase, metal binding protein; 1.90A {Pseudomonas
aeruginosa}
Length = 246
Score = 29.8 bits (67), Expect = 0.36
Identities = 7/25 (28%), Positives = 7/25 (28%)
Query: 143 THHHQDHAGGNYDLVSRYPHLKEHP 167
TH H D GGN
Sbjct: 75 THFHLDGTGGNEIYKKMGAETWSSD 99
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET:
MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB:
2fk6_A*
Length = 320
Score = 29.7 bits (67), Expect = 0.39
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 135 AQLKHIWTTHHHQDHAGGNYDLVSRYPHLK-EHPVY 169
+++ I+ TH H DH G L+ E +
Sbjct: 54 RKIEKIFITHMHGDHVYGLPGLLGSRSFQGGEDELT 89
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel,
structural genomics, PSI-2 structure initiative; HET:
MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP:
c.66.1.51
Length = 332
Score = 29.8 bits (67), Expect = 0.48
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 12 YKPLLKQCMSLLPPATPFLFKFNYLARFSTMA 43
+L C +L P L Y R S +
Sbjct: 251 LPLMLDICREILSPKALGLVLTAYSIRASFYS 282
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima}
SCOP: d.157.1.11
Length = 221
Score = 28.9 bits (65), Expect = 0.76
Identities = 5/19 (26%), Positives = 8/19 (42%)
Query: 135 AQLKHIWTTHHHQDHAGGN 153
+ + TH H DH +
Sbjct: 72 DDITDVLFTHVHLDHIFNS 90
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
PDB: 1ycf_A* 1ych_A*
Length = 398
Score = 29.0 bits (65), Expect = 0.81
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 105 YLVVDKASKHAAAIDPVEPHK---ILDAVNSH--SAQLKHIWTTHHHQDHAGGNYDLVSR 159
YL+VD A +D V ++ + +L ++ H DHAG ++
Sbjct: 39 YLIVDD---KTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMEL 95
Query: 160 YPHLK 164
P
Sbjct: 96 CPDAH 100
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein;
choline-binding protein, PCE, phosphorylcholine estera
hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae}
SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Length = 547
Score = 28.9 bits (64), Expect = 0.86
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 136 QLKHIWTTHHHQDHAGGNYDLVSRYP 161
+L I TH H DH G +L+S YP
Sbjct: 77 KLDFILVTHTHSDHIGNVDELLSTYP 102
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine
lactone, DI-nuclear zinc center quenching, AIIB,
phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Length = 276
Score = 28.3 bits (63), Expect = 1.3
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 127 LDAVNSHSAQLKHIWTTHHHQDHAGGNYDL 156
L + + + +H H DHAG
Sbjct: 94 LRQLGLSPDDISTVVLSHLHNDHAGCVEYF 123
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding
protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A
{Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A*
2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A*
1gcg_A 3ga5_A* 3gbp_A*
Length = 309
Score = 28.1 bits (63), Expect = 1.7
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 95 LIPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHI 140
I DN+M +V + A A V+ + D+ N S Q I
Sbjct: 8 TIYKYDDNFMSVVRKAIEQDAKAAPDVQL-LMNDSQNDQSKQNDQI 52
>1l1y_A Cellobiohydrolase; alpha/alpha barrel; HET: BGC; 2.40A
{Clostridium thermocellum} SCOP: a.102.1.2 PDB: 1l2a_A*
Length = 678
Score = 28.0 bits (62), Expect = 1.9
Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 15/83 (18%)
Query: 1 MTITRKISFLVYKPLLKQCMSLL-----PPATPFLFKFNYLARFSTMANDDFKPVTHYFR 55
M +RKIS L+ +L M P P +Y F + P YF
Sbjct: 1 MVKSRKISILLAVAMLVSIMIPTTAFAGPTKAPTKDGTSYKDLFLELYGKIKDPKNGYFS 60
Query: 56 HEENHFSHA----------FGHE 68
+E H+ +GH
Sbjct: 61 PDEGIPYHSIETLIVEAPDYGHV 83
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 2.2
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 82 KRVTHDFGKYTVDLIPAL 99
K++ Y D PAL
Sbjct: 23 KKLQASLKLYADDSAPAL 40
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14,
autoinhibition, substituted aldamine, lyase; HET: PLP;
1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A*
1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Length = 452
Score = 27.6 bits (61), Expect = 2.5
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 9/94 (9%)
Query: 75 HEFDNGEKRVTHDFGKYTVD---LIPALKDNYMYLVVDKASKHAAAIDPVEP-HKILDAV 130
+D + + G+ +D +I A +N + +V + + +P H LD
Sbjct: 157 RYWDVELREIPMRPGQLFMDPKRMIEACDENTIGVVPTFGVTYTGNYEFPQPLHDALDK- 215
Query: 131 NSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLK 164
Q H D A G + P +
Sbjct: 216 ----FQADTGIDIDMHIDAASGGFLAPFVAPDIV 245
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.50A {Bacillus
anthracis str} SCOP: d.157.1.9
Length = 268
Score = 27.3 bits (61), Expect = 2.5
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 135 AQLKHIWTTHHHQDHAGG 152
+ + + +H+H DH
Sbjct: 74 SDIDAVVLSHYHHDHVAD 91
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.50A
{Staphylococcus aureus subsp}
Length = 280
Score = 27.3 bits (61), Expect = 2.6
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 127 LDAVNSHSAQLKHIWTTHHHQDHAGGNYD 155
L N + ++ TH H DHA G D
Sbjct: 91 LANYNLTPKDIDYVLMTHMHFDHAAGLTD 119
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 3.4
Identities = 32/154 (20%), Positives = 49/154 (31%), Gaps = 39/154 (25%)
Query: 34 NYLARFSTMANDDFKPVTHYF--------RHEENHFSHAFGHERKPAVTHEFDNGEKRVT 85
N L ++S + K T EN ++ H V H N K
Sbjct: 409 NKLHKYS-LVEKQPKESTISIPSIYLELKVKLENEYAL---HRS--IVDH--YNIPKTFD 460
Query: 86 HDFGKYTVDLIPALKDNYMYLVVDKASKHAAAIDPVE-----PHKILDAVNSHSAQLKHI 140
D DLIP D Y Y + H I+ E LD +++H
Sbjct: 461 SD------DLIPPYLDQYFYSHI---GHHLKNIEHPERMTLFRMVFLD-FRFLEQKIRHD 510
Query: 141 WTTHHHQDHAGGNYDLVSR---Y-PHL-KEHPVY 169
T + +G + + + Y P++ P Y
Sbjct: 511 STA---WNASGSILNTLQQLKFYKPYICDNDPKY 541
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP}
SCOP: d.157.1.5
Length = 331
Score = 27.0 bits (60), Expect = 3.7
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 127 LDAVNSHSAQLKHIWTTHHHQDHAGGN 153
L A Q+ I+ TH H DH GG
Sbjct: 130 LKAAGYQPEQVDEIYITHMHPDHVGGL 156
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of
two (beta/ALFA)4 domains, metal transport; 1.70A
{Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A
2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Length = 284
Score = 26.6 bits (59), Expect = 4.4
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 111 ASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHL 163
I +E K L + H H +DH G+++ HL
Sbjct: 71 PGAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFN-----MHL 118
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 26.2 bits (58), Expect = 5.3
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 127 LDAVNSHSAQLKHIWTTHHHQDHAGGNYD 155
L V L +I ++H H DHAGGN
Sbjct: 91 LKRVGYEPDDLLYIISSHLHFDHAGGNGA 119
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR
initiative, PSI, joint center for structural genomics,
ELEC transport; HET: MSE; 1.80A {Thermotoga maritima}
SCOP: c.23.5.1 d.157.1.3
Length = 410
Score = 26.3 bits (58), Expect = 5.5
Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 7/63 (11%)
Query: 105 YLVVDKASKHAAAIDPVEPH---KILDAVNSH--SAQLKHIWTTHHHQDHAGGNYDLVSR 159
YLV K + ID + + + +DA++ ++ HI H DH+G +
Sbjct: 55 YLV--KLNGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKT 112
Query: 160 YPH 162
H
Sbjct: 113 IGH 115
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; 1.97A {Thermotoga maritima}
SCOP: d.157.1.7 PDB: 1ww1_A
Length = 280
Score = 26.1 bits (58), Expect = 5.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 136 QLKHIWTTHHHQDHAGGNYDLVSR 159
K+++ TH H DH G + +V+
Sbjct: 40 AFKYVFLTHGHVDHIAGLWGVVNI 63
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure
initiative, northeast structural GE consortium, NESG,
NSR435A, DFA5, electron transport; 1.80A {Nostoc SP}
Length = 262
Score = 26.3 bits (58), Expect = 6.5
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 8/65 (12%)
Query: 105 YLVVDKASKHAAAIDPVEPHK---ILDAVNSH--SAQLKHIWTTHHHQDHAGGNYDLVSR 159
Y++ A IDP L+A+ +L ++ H + L+
Sbjct: 46 YVIEGDK---TAIIDPPVESFMKIYLEALQQTVNLKKLDYVILGHFSPNRIPTFKALLEL 102
Query: 160 YPHLK 164
P +
Sbjct: 103 APQIT 107
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein,
metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium
loti} PDB: 3aj0_A
Length = 274
Score = 26.2 bits (58), Expect = 6.6
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 135 AQLKHIWTTHHHQDHAGGNYDL 156
+ + +H H DH GGN
Sbjct: 87 RDIDVVVNSHFHFDHCGGNKYF 108
>2l6m_A Protein dicer; DSRBD, hydrolase; NMR {Schizosaccharomyces pombe}
Length = 121
Score = 25.4 bits (55), Expect = 7.6
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 142 TTHHHQDHAGGNYDLVSRYPHLK---EHPVYGLKMD 174
++HHH H+ G LV R H+K EH VY L D
Sbjct: 3 SSHHHHHHSSG---LVPRGSHMKGDIEHKVYQLLKD 35
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR
initiative, midwest center for structural genomics,
MCSG, U function; 2.00A {Enterococcus faecalis} SCOP:
d.157.1.10
Length = 429
Score = 25.8 bits (57), Expect = 8.8
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 8/31 (25%)
Query: 143 THHHQDHAGGNYDLVSRYPHLKEH-PVYGLK 172
+H H DH+ +L P+Y LK
Sbjct: 91 SHAHLDHSRM-------INYLDPAVPLYTLK 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.137 0.431
Gapped
Lambda K H
0.267 0.0569 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,842,304
Number of extensions: 161011
Number of successful extensions: 463
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 76
Length of query: 174
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 87
Effective length of database: 4,272,666
Effective search space: 371721942
Effective search space used: 371721942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.9 bits)