RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17906
(174 letters)
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 254
Score = 70.7 bits (172), Expect = 7e-16
Identities = 28/70 (40%), Positives = 41/70 (58%)
Query: 93 VDLIPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGG 152
++L+P LKDNY Y++ D+ + +DP E I+D++ L +I THHH DH GG
Sbjct: 3 IELVPCLKDNYAYILHDEDTGTVGVVDPSEAEPIIDSLKRSGRNLTYILNTHHHYDHTGG 62
Query: 153 NYDLVSRYPH 162
N +L RY
Sbjct: 63 NLELKDRYGA 72
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 260
Score = 69.6 bits (169), Expect = 2e-15
Identities = 39/77 (50%), Positives = 51/77 (66%)
Query: 93 VDLIPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGG 152
V+++PAL DNYMYLV+D +K AA +DPV+P K++DA H +L + TTHHH DHAGG
Sbjct: 3 VEVLPALTDNYMYLVIDDETKEAAIVDPVQPQKVVDAARKHGVKLTTVLTTHHHWDHAGG 62
Query: 153 NYDLVSRYPHLKEHPVY 169
N LV LK +
Sbjct: 63 NEKLVKLESGLKVYGGD 79
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Salmonella typhimurium [TaxId: 90371]}
Length = 251
Score = 60.7 bits (146), Expect = 3e-12
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 93 VDLIPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGG 152
++ IPA +DNY++++ + +DP E +L A+ H + I+ THHH DH GG
Sbjct: 3 LNSIPAFQDNYIWVLTND-EGRCVIVDPGEAAPVLKAIAEHKWMPEAIFLTHHHHDHVGG 61
Query: 153 NYDLVSRYPHLKEHP 167
+L+ +P + +
Sbjct: 62 VKELLQHFPQMTVYG 76
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 250
Score = 34.1 bits (77), Expect = 0.005
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 105 YLVVDKASKHAAAIDPVEP---HKILDAVNSH--SAQLKHIWTTHHHQDHAGGNYDLVSR 159
YLV + ID + + +DA++ ++ HI H DH+G +
Sbjct: 43 YLVKL--NGANVLIDGWKGNYAKEFIDALSKIVDPKEITHIIVNHTEPDHSGSLPATLKT 100
Query: 160 YPH 162
H
Sbjct: 101 IGH 103
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO),
N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Length = 249
Score = 33.8 bits (76), Expect = 0.007
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 8/63 (12%)
Query: 105 YLVVDKASKHAAAIDPVEP---HKILDAVNSHS--AQLKHIWTTHHHQDHAGGNYDLVSR 159
YLV D+ D V+ ++L + S ++ ++ H DHAG L+
Sbjct: 37 YLVEDE---KTTLFDTVKAEYKGELLCGIASVIDPKKIDYLVIQHLELDHAGALPALIEA 93
Query: 160 YPH 162
Sbjct: 94 CQP 96
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 249
Score = 32.6 bits (73), Expect = 0.017
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 8/67 (11%)
Query: 105 YLVVDKASKHAAAIDPVEP---HKILDAVNSHS--AQLKHIWTTHHHQDHAGGNYDLVSR 159
YL+VD A +D V +++ + +L ++ H DHAG ++
Sbjct: 39 YLIVDD---KTALVDTVYEPFKEELIAKLKQIKDPVKLDYLVVNHTESDHAGAFPAIMEL 95
Query: 160 YPHLKEH 166
P
Sbjct: 96 CPDAHVL 102
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 298
Score = 31.5 bits (70), Expect = 0.038
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 101 DNYMYLVVDKASKHAAAIDP---VEPHKILDAVNSHS---AQLKHIWTTHHHQDHAGGNY 154
++L+ A ++ + + + +Q+ + TH H DH G
Sbjct: 21 QVPVFLLRL-GEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITHKHYDHCGLLP 79
Query: 155 DLVSRYPHLK 164
L R P+++
Sbjct: 80 YLCPRLPNVQ 89
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp.
WBC-3 [TaxId: 165468]}
Length = 294
Score = 30.3 bits (67), Expect = 0.11
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 127 LDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPH 162
L A Q+ I+ TH H DH GG
Sbjct: 95 LKAAGYQPEQVDEIYITHMHPDHVGGLMVGEQLAFP 130
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 29.6 bits (65), Expect = 0.21
Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 3/36 (8%)
Query: 135 AQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYG 170
++ + TH H DH G L PVY
Sbjct: 50 KEVDAVLLTHAHLDHVGRLPKLFREGYR---GPVYA 82
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 505
Score = 29.4 bits (65), Expect = 0.23
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 137 LKHIWTTHHHQDHAGGNYDLVSRYPH 162
++ + +H H DH GG LV
Sbjct: 143 IRTVIYSHAHADHFGGVRGLVEPQQV 168
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus
[TaxId: 1396]}
Length = 221
Score = 29.1 bits (64), Expect = 0.24
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 7/69 (10%)
Query: 104 MYLVVDKASKHAAAID----PVEPHKILDAVNS-HSAQLKHIWTTHHHQDHAGGNYDLVS 158
++ K +D ++++ V ++ + TH H D GG L
Sbjct: 37 GLVLNTS--KGLVLVDSSWDDKLTKELIEMVEKKFQKRVTDVIITHAHADRIGGIKTLKE 94
Query: 159 RYPHLKEHP 167
R
Sbjct: 95 RGIKAHSTA 103
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894
{Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 27.8 bits (60), Expect = 0.66
Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 6/68 (8%)
Query: 92 TVDLIPALKDNYMYLVVDKASKHAAAIDPVEPHKI------LDAVNSHSAQLKHIWTTHH 145
V + L ++ +V + IDP + + + + TH
Sbjct: 11 NVFVPGRLNAHFSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHV 70
Query: 146 HQDHAGGN 153
H DH +
Sbjct: 71 HLDHIFNS 78
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 27.7 bits (60), Expect = 0.75
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 136 QLKHIWTTHHHQDHAGGNYDLVSRYP 161
+L I TH H DH G +L+S YP
Sbjct: 73 KLDFILVTHTHSDHIGNVDELLSTYP 98
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
aeruginosa, VIM-2 [TaxId: 287]}
Length = 230
Score = 27.3 bits (59), Expect = 0.80
Identities = 12/69 (17%), Positives = 18/69 (26%), Gaps = 3/69 (4%)
Query: 104 MYLVVDKASK--HAAAIDPVEPHKILDAV-NSHSAQLKHIWTTHHHQDHAGGNYDLVSRY 160
+V D A +L + + +TH H D GG L +
Sbjct: 40 GLIVRDGDELLLIDTAWGAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAG 99
Query: 161 PHLKEHPVY 169
P
Sbjct: 100 VATYASPST 108
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas
hydrophila, CphA [TaxId: 644]}
Length = 228
Score = 27.6 bits (60), Expect = 0.82
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 7/69 (10%)
Query: 104 MYLVVDKASKHAAAID----PVEPHKILDAVNSHSAQLK-HIWTTHHHQDHAGGNYDLVS 158
+ K + P ++ + S + + T++H D AGGN S
Sbjct: 25 SMVYFGA--KGVTVVGATWTPDTARELHKLIKRVSRKPVLEVINTNYHTDRAGGNAYWKS 82
Query: 159 RYPHLKEHP 167
+
Sbjct: 83 IGAKVVSTR 91
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides
fragilis [TaxId: 817]}
Length = 230
Score = 27.3 bits (59), Expect = 0.92
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 7/70 (10%)
Query: 104 MYLVVDKASKHAAAIDPVEPHK-----ILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVS 158
+V++ AA +D + +S A++ H H D GG L
Sbjct: 37 GMIVINN--HQAALLDTPINDAQTETLVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQK 94
Query: 159 RYPHLKEHPV 168
+ + +
Sbjct: 95 KGVQSYANQM 104
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 27.3 bits (59), Expect = 0.97
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 101 DNYMYLVVDKASKHAAAIDPVEPH------KILDAVNSHSAQLKHIWTTHHHQDHAGGNY 154
+Y++ + +D P + + A +K I TH H DH GG
Sbjct: 26 GIAVYVIKTS--QGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFA 83
Query: 155 DLVSRYPH 162
++
Sbjct: 84 EIKKETGA 91
>d1k3ia1 b.1.18.2 (A:538-639) Galactose oxidase, C-terminal domain
{Fungi (Fusarium sp.) [TaxId: 29916]}
Length = 102
Score = 26.3 bits (58), Expect = 1.2
Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 69 RKPAVTHEFDNGEKRVTHDF-----GKYTVDLIP----ALKDNYMYLVVDKA 111
R TH + ++R+ Y+ + AL +M V++ A
Sbjct: 38 RYGTATHTVNTDQRRIPLTLTNNGGNSYSFQVPSDSGVALPGYWMLFVMNSA 89
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
specificity factor subunit 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 451
Score = 27.0 bits (58), Expect = 1.5
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 135 AQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYG 170
A++ + +H H DH G + + + +
Sbjct: 54 AEIDLLLISHFHLDHCGALPWFLQKTSF--KGRTFM 87
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 26.6 bits (57), Expect = 1.8
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 126 ILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRY 160
+ + S K+++ TH H DH G + +V+
Sbjct: 30 VSTTLGSKVYAFKYVFLTHGHVDHIAGLWGVVNIR 64
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas
maltophilia [TaxId: 40324]}
Length = 266
Score = 25.7 bits (55), Expect = 3.4
Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 8/68 (11%)
Query: 101 DNYMYLVVDKASKHAAAIDPVEPH------KILDAVNSHSAQLKHIWTTHHHQDHAGGNY 154
D LV A +D P + A L+ I +H H DHAG
Sbjct: 36 DLTALLVQT--PDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVA 93
Query: 155 DLVSRYPH 162
+L R
Sbjct: 94 ELKRRTGA 101
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena
variabilis [TaxId: 1172]}
Length = 200
Score = 25.3 bits (54), Expect = 4.3
Identities = 8/62 (12%), Positives = 16/62 (25%), Gaps = 4/62 (6%)
Query: 101 DNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRY 160
D + + + IDPV + I + DH ++ +
Sbjct: 22 DFNGFAWIR--PEGNILIDPVALSNHDWKHLESLGGVVWIV--LTNSDHVRSAKEIADQT 77
Query: 161 PH 162
Sbjct: 78 YT 79
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904
{Enterococcus faecalis [TaxId: 1351]}
Length = 183
Score = 25.0 bits (53), Expect = 4.5
Identities = 9/56 (16%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 118 IDPVEPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEHPVYGLKM 173
DP ++ Q ++ +H H DH+ L P +
Sbjct: 12 YDPRLGYE-YHGAEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILN 66
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 25.2 bits (54), Expect = 6.2
Identities = 5/48 (10%), Positives = 13/48 (27%), Gaps = 2/48 (4%)
Query: 125 KILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVSRYPHLKEH--PVYG 170
+ + ++ I + + G + L + VY
Sbjct: 42 QCIKYWEKVIPEIDVIILSQPTIECLGAHSLLYYNFTSHFISRIQVYA 89
>d1wtea_ c.52.1.29 (A:) Restriction endonuclease EcoO109IR
{Escherichia coli [TaxId: 562]}
Length = 272
Score = 24.6 bits (53), Expect = 6.4
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 15 LLKQCMSLLPPATPFLFKFNYLARFSTM 42
L+ + MS+ P TPF+F ++ L F +
Sbjct: 28 LMSETMSINPFMTPFIFDYHSLNDFDEL 55
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 24.5 bits (53), Expect = 8.9
Identities = 6/61 (9%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 90 KYTVDLIPALKDNYMYLVVDKASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQDH 149
+ + L A+ + ++D +D ++ ++ K +H
Sbjct: 164 RARISLARAVYKDADLYLLDSPF---GYLDVFTEEQVFESCVCKLMANKTRILVTSKMEH 220
Query: 150 A 150
Sbjct: 221 L 221
>d2f3ga_ b.84.3.1 (A:) Glucose-specific factor III (glsIII)
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 23.9 bits (52), Expect = 9.3
Identities = 9/54 (16%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 101 DNYMYLVVD------KASKHAAAIDPVEPHKILDAVNSHSAQLKHIWTTHHHQD 148
N M VD + HA +I+ ++ + +LK ++
Sbjct: 38 GNKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGEGFKRIAEE 91
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium
meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}
Length = 219
Score = 24.3 bits (51), Expect = 9.5
Identities = 12/69 (17%), Positives = 16/69 (23%), Gaps = 7/69 (10%)
Query: 104 MYLVVDKASKHAAAIDPV-----EPHKILDAVNSHSAQLKHIWTTHHHQDHAGGNYDLVS 158
+V K ID + H ++ TH H D AGG
Sbjct: 29 AVYLVTD--KGVVVIDCPWGEDKFKSFTDEIYKKHGKKVIMNIATHSHDDRAGGLEYFGK 86
Query: 159 RYPHLKEHP 167
Sbjct: 87 IGAKTYSTK 95
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 397
Score = 24.4 bits (51), Expect = 9.6
Identities = 6/60 (10%), Positives = 14/60 (23%)
Query: 18 QCMSLLPPATPFLFKFNYLARFSTMANDDFKPVTHYFRHEENHFSHAFGHERKPAVTHEF 77
Q + + + +N S D + + F + K +
Sbjct: 23 QALYRVNDLRDMILNYNPSQGVSNSGAQDEEIHKQIVIEMKRCFENLQNKSFKSVLPVVL 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.137 0.431
Gapped
Lambda K H
0.267 0.0629 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 695,704
Number of extensions: 31090
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 35
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.3 bits)