Query psy17909
Match_columns 140
No_of_seqs 174 out of 1454
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 17:13:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02469 hydroxyacylglutathion 100.0 1.5E-38 3.3E-43 254.7 12.9 123 3-125 103-230 (258)
2 PRK10241 hydroxyacylglutathion 100.0 6.5E-36 1.4E-40 238.1 12.2 117 3-125 101-221 (251)
3 PLN02398 hydroxyacylglutathion 100.0 3.9E-35 8.5E-40 242.3 13.0 120 3-126 178-301 (329)
4 TIGR03413 GSH_gloB hydroxyacyl 100.0 5E-34 1.1E-38 226.7 12.3 121 2-126 97-221 (248)
5 KOG0813|consensus 100.0 6.9E-33 1.5E-37 222.2 12.2 123 2-125 107-234 (265)
6 PLN02962 hydroxyacylglutathion 99.9 6.5E-22 1.4E-26 158.3 11.2 90 2-123 115-213 (251)
7 KOG0814|consensus 99.7 9.1E-18 2E-22 128.5 7.7 88 2-124 111-204 (237)
8 COG0491 GloB Zn-dependent hydr 98.8 2.2E-08 4.8E-13 76.2 8.6 66 3-71 139-212 (252)
9 PRK05452 anaerobic nitric oxid 98.2 3.2E-06 6.9E-11 73.4 6.6 87 3-102 137-252 (479)
10 PRK11921 metallo-beta-lactamas 98.1 2E-05 4.2E-10 66.6 8.8 84 3-99 133-245 (394)
11 PF00753 Lactamase_B: Metallo- 98.0 4.1E-05 8.9E-10 55.2 7.7 62 3-69 117-194 (194)
12 PF14597 Lactamase_B_5: Metall 97.9 4.4E-05 9.6E-10 59.0 7.2 65 4-73 109-184 (199)
13 smart00849 Lactamase_B Metallo 97.1 0.0037 8E-08 45.3 8.0 62 3-69 114-183 (183)
14 COG0426 FpaA Uncharacterized f 94.5 0.14 3E-06 43.9 6.7 87 3-102 136-247 (388)
15 KOG4736|consensus 89.5 0.68 1.5E-05 38.3 4.7 69 4-75 179-260 (302)
16 PRK11539 ComEC family competen 82.6 1.7 3.7E-05 40.0 4.1 71 2-84 603-682 (755)
17 TIGR00649 MG423 conserved hypo 80.0 4.1 8.9E-05 34.6 5.3 36 2-38 127-166 (422)
18 PF01148 CTP_transf_1: Cytidyl 70.1 3.4 7.4E-05 31.9 2.1 33 44-76 210-242 (259)
19 PF08747 DUF1788: Domain of un 69.1 7.1 0.00015 28.3 3.4 56 29-86 62-118 (126)
20 PF06962 rRNA_methylase: Putat 63.7 6.5 0.00014 29.1 2.4 51 37-100 54-114 (140)
21 PRK11624 cdsA CDP-diglyceride 61.8 5.3 0.00012 32.6 1.8 33 43-75 231-263 (285)
22 COG0575 CdsA CDP-diglyceride s 59.9 6.4 0.00014 31.6 1.9 30 46-75 217-246 (265)
23 cd01833 XynB_like SGNH_hydrola 58.8 19 0.00042 25.4 4.2 48 24-71 2-52 (157)
24 PF09587 PGA_cap: Bacterial ca 44.8 30 0.00065 27.1 3.5 33 25-57 2-35 (250)
25 cd01828 sialate_O-acetylestera 42.5 1.1E+02 0.0023 21.8 6.0 47 25-71 2-60 (169)
26 cd01841 NnaC_like NnaC (CMP-Ne 40.8 1.1E+02 0.0025 21.7 5.9 49 24-72 2-64 (174)
27 PF10996 Beta-Casp: Beta-Casp 36.9 86 0.0019 21.4 4.6 39 22-71 80-118 (126)
28 COG2062 SixA Phosphohistidine 36.7 45 0.00098 25.2 3.2 35 40-76 82-116 (163)
29 PF03568 Peptidase_C50: Peptid 32.9 53 0.0012 27.8 3.4 13 61-73 309-321 (383)
30 cd01840 SGNH_hydrolase_yrhL_li 32.0 69 0.0015 22.8 3.5 47 25-71 2-62 (150)
31 cd07397 MPP_DevT Myxococcus xa 31.6 1.8E+02 0.0038 23.3 6.0 38 60-97 145-192 (238)
32 cd08166 MPP_Cdc1_like_1 unchar 31.5 99 0.0021 24.0 4.4 45 23-72 44-93 (195)
33 cd04502 SGNH_hydrolase_like_7 30.9 2E+02 0.0043 20.5 6.3 28 44-71 34-62 (171)
34 PHA02546 47 endonuclease subun 30.6 94 0.002 25.7 4.5 48 23-73 41-90 (340)
35 cd07400 MPP_YydB Bacillus subt 30.2 91 0.002 21.6 3.8 11 23-33 37-47 (144)
36 PF09580 Spore_YhcN_YlaJ: Spor 30.1 2.2E+02 0.0048 20.8 6.6 76 23-116 93-169 (177)
37 TIGR00249 sixA phosphohistidin 29.5 70 0.0015 23.2 3.2 33 41-74 81-113 (152)
38 COG1360 MotB Flagellar motor p 28.7 2.9E+02 0.0064 21.8 7.0 68 22-94 125-192 (244)
39 PLN02594 phosphatidate cytidyl 27.2 49 0.0011 28.0 2.2 34 44-77 250-283 (342)
40 PRK11148 cyclic 3',5'-adenosin 27.0 1.1E+02 0.0023 24.3 4.1 39 24-71 58-97 (275)
41 cd07402 MPP_GpdQ Enterobacter 26.2 1.4E+02 0.0031 22.5 4.5 39 24-71 43-82 (240)
42 PLN02953 phosphatidate cytidyl 26.1 47 0.001 28.8 1.9 33 44-76 348-380 (403)
43 TIGR00361 ComEC_Rec2 DNA inter 25.8 1.6E+02 0.0034 26.8 5.4 50 22-84 574-624 (662)
44 cd00472 Ribosomal_L24e_L24 Rib 25.2 31 0.00067 21.4 0.5 9 63-71 11-19 (54)
45 PF01246 Ribosomal_L24e: Ribos 25.2 31 0.00068 22.6 0.6 8 64-71 12-19 (71)
46 TIGR01854 lipid_A_lpxH UDP-2,3 24.8 1.1E+02 0.0025 23.5 3.8 10 23-32 32-41 (231)
47 smart00854 PGA_cap Bacterial c 24.3 83 0.0018 24.4 3.0 29 25-56 2-30 (239)
48 PF07355 GRDB: Glycine/sarcosi 24.3 1.1E+02 0.0024 26.1 3.8 38 25-71 53-90 (349)
49 PF08384 NPP: Pro-opiomelanoco 24.0 69 0.0015 19.2 1.8 27 45-71 14-40 (45)
50 COG1329 Transcriptional regula 23.8 49 0.0011 25.3 1.5 13 60-72 7-19 (166)
51 PRK10848 phosphohistidine phos 23.7 1E+02 0.0022 22.6 3.1 32 42-74 82-113 (159)
52 COG1237 Metal-dependent hydrol 23.3 1.1E+02 0.0023 25.0 3.4 30 41-72 204-233 (259)
53 TIGR01212 radical SAM protein, 23.2 4.1E+02 0.0089 21.5 7.0 58 42-101 234-293 (302)
54 KOG1722|consensus 21.1 40 0.00086 25.2 0.5 13 58-71 7-19 (155)
55 cd07381 MPP_CapA CapA and rela 20.4 1.3E+02 0.0027 23.2 3.3 33 25-57 1-36 (239)
No 1
>PLN02469 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=1.5e-38 Score=254.69 Aligned_cols=123 Identities=40% Similarity=0.651 Sum_probs=112.3
Q ss_pred eEEEEEeCCe----EEEEeccc-CCCCeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCccccc
Q psy17909 3 LGDTLFVAGA----GKFFEGDG-AFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLY 77 (140)
Q Consensus 3 ~~~vi~tPGH----~~~~~~~~-~~~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~nl~ 77 (140)
.++|++|||| ++|+..+. .+.++|||||+||.++|||+++|++++|++||++++..||++++|||||||+..|++
T Consensus 103 ~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~~g~Gr~~~g~~~~~~~Sl~~~l~~Lp~~t~vypGH~yt~~nl~ 182 (258)
T PLN02469 103 NILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCGKFFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKNLK 182 (258)
T ss_pred EEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccCCCcCCCCCCCHHHHHHHHHHHHHcCCCCeEEEcCCCCchhHHH
Confidence 5899999999 56654321 124699999999999999999999999999998778889999999999999999999
Q ss_pred cccccCCCcHHHHHHHHHHHHHhhcCCCCCCccHHHHHHcCCcceecc
Q psy17909 78 FSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMVM 125 (140)
Q Consensus 78 fa~~~~~~n~~i~~~l~~~~~~~~~~~~~~~stl~~E~~~Npflr~~~ 125 (140)
||++++|+|+.+++++++++++|+++.||+||||++||++|||||+..
T Consensus 183 Fa~~vep~n~~~~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~ 230 (258)
T PLN02469 183 FALTVEPDNEKLKQKLEWAEKQRQAGLPTVPSTIEEELETNPFMRVDL 230 (258)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHHHCCCCcCCccHHHHHhhCCeecCCC
Confidence 999999999999999999999999999999999999999999999853
No 2
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=100.00 E-value=6.5e-36 Score=238.06 Aligned_cols=117 Identities=26% Similarity=0.468 Sum_probs=110.3
Q ss_pred eEEEEEeCCe----EEEEecccCCCCeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCcccccc
Q psy17909 3 LGDTLFVAGA----GKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYF 78 (140)
Q Consensus 3 ~~~vi~tPGH----~~~~~~~~~~~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~nl~f 78 (140)
.+++++|||| ++|+. .+++||||+||.++||++++|++++|++||+ +|..||++++|||||+|+..|++|
T Consensus 101 ~~~vi~tPGHT~ghi~~~~-----~~~lFtGDtlf~~g~gr~f~g~~~~~~~Sl~-kl~~l~~~t~i~pgH~y~~~n~~f 174 (251)
T PRK10241 101 EFSVFATPGHTLGHICYFS-----KPYLFCGDTLFSGGCGRLFEGTASQMYQSLK-KINALPDDTLICCAHEYTLSNMKF 174 (251)
T ss_pred EEEEEEcCCCCccceeeec-----CCcEEEcCeeccCCcCCCCCCCHHHHHHHHH-HHHcCCCCEEEECCCCChhhhHHH
Confidence 6899999999 56664 3689999999999999999999999999998 689999999999999999999999
Q ss_pred ccccCCCcHHHHHHHHHHHHHhhcCCCCCCccHHHHHHcCCcceecc
Q psy17909 79 SKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMVM 125 (140)
Q Consensus 79 a~~~~~~n~~i~~~l~~~~~~~~~~~~~~~stl~~E~~~Npflr~~~ 125 (140)
|++++|+|+.+++++++++++|+++.||+||||++||++|||||++.
T Consensus 175 a~~~~p~n~~l~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~ 221 (251)
T PRK10241 175 ALSILPHDLSINDYYRKVKELRAKNQITLPVILKNERQINLFLRTED 221 (251)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHCCCCcCCccHHHHHhhCCeecCCC
Confidence 99999999999999999999999999999999999999999999864
No 3
>PLN02398 hydroxyacylglutathione hydrolase
Probab=100.00 E-value=3.9e-35 Score=242.31 Aligned_cols=120 Identities=30% Similarity=0.494 Sum_probs=111.6
Q ss_pred eEEEEEeCCe----EEEEecccCCCCeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCcccccc
Q psy17909 3 LGDTLFVAGA----GKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYF 78 (140)
Q Consensus 3 ~~~vi~tPGH----~~~~~~~~~~~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~nl~f 78 (140)
.+++++|||| ++|+.. +.++|||||+||.++||++++|++++|++||+ +|..||+++.|||||||+..|++|
T Consensus 178 ~l~vi~tPGHT~GhI~~~~~---~~~vLFtGDtLf~~g~Gr~feg~~~~~~~SL~-rL~~L~~~t~VypGHgyt~~Nl~F 253 (329)
T PLN02398 178 EVLVMETPGHTRGHISFYFP---GSGAIFTGDTLFSLSCGKLFEGTPEQMLSSLQ-KIISLPDDTNIYCGHEYTLSNSKF 253 (329)
T ss_pred EEEEEeCCCcCCCCEEEEEC---CCCEEEECCCcCCCCcCCCCCCCHHHHHHHHH-HHHcCCCCeEEECCCCChhcchhh
Confidence 5899999999 566553 25799999999999999999999999999998 799999999999999999999999
Q ss_pred ccccCCCcHHHHHHHHHHHHHhhcCCCCCCccHHHHHHcCCcceeccc
Q psy17909 79 SKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMVMV 126 (140)
Q Consensus 79 a~~~~~~n~~i~~~l~~~~~~~~~~~~~~~stl~~E~~~Npflr~~~~ 126 (140)
|++++|+|+.+++++++++++|+++.||+||||++||++|||||++..
T Consensus 254 a~~vep~n~~l~~~~~~v~~~r~~~~~t~Pstl~~E~~~NPFlR~~~~ 301 (329)
T PLN02398 254 ALSIEPNNEVLQSYAAHVAHLRSKGLPTIPTTVKMEKACNPFLRTSST 301 (329)
T ss_pred HhhhCCChHHHHHHHHHHHHHHHcCCCcCCccHHHHHhhCCeecCCCH
Confidence 999999999999999999999999999999999999999999998643
No 4
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=100.00 E-value=5e-34 Score=226.73 Aligned_cols=121 Identities=36% Similarity=0.584 Sum_probs=111.9
Q ss_pred eeEEEEEeCCe----EEEEecccCCCCeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCccccc
Q psy17909 2 ALGDTLFVAGA----GKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLY 77 (140)
Q Consensus 2 ~~~~vi~tPGH----~~~~~~~~~~~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~nl~ 77 (140)
..+++++|||| ++|+.. +.+++||||++|.++||++++|+.++|++||+ ++..+|++++|||||||+..|++
T Consensus 97 ~~i~v~~tpGHT~g~i~~~~~---~~~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~-~l~~l~~~~~i~pGH~~~~~n~~ 172 (248)
T TIGR03413 97 LEFEVLAVPGHTLGHIAYYLP---DSPALFCGDTLFSAGCGRLFEGTPEQMYDSLQ-RLAALPDDTLVYCAHEYTLSNLR 172 (248)
T ss_pred EEEEEEECCCCCcccEEEEEC---CCCEEEEcCccccCCcCCCCCCCHHHHHHHHH-HHHcCCCCeEEECCCCchHHHHH
Confidence 36889999999 566554 36799999999999999999999999999998 69999999999999999999999
Q ss_pred cccccCCCcHHHHHHHHHHHHHhhcCCCCCCccHHHHHHcCCcceeccc
Q psy17909 78 FSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMVMV 126 (140)
Q Consensus 78 fa~~~~~~n~~i~~~l~~~~~~~~~~~~~~~stl~~E~~~Npflr~~~~ 126 (140)
||++++|+|+.++++++++++++++|.+|+||||++||++|||||++..
T Consensus 173 fa~~~~p~~~~l~~~~~~~~~~~~~~~~t~pstl~~E~~~Npflr~~~~ 221 (248)
T TIGR03413 173 FALTVEPDNPALQERLKEVEALRAQGQPTLPSTLGLERATNPFLRADDP 221 (248)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHhhCCeecCCCH
Confidence 9999999999999999999999999999999999999999999999643
No 5
>KOG0813|consensus
Probab=100.00 E-value=6.9e-33 Score=222.19 Aligned_cols=123 Identities=38% Similarity=0.652 Sum_probs=114.9
Q ss_pred eeEEEEEeCCe----EEEEecccCCCCeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCccccc
Q psy17909 2 ALGDTLFVAGA----GKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLY 77 (140)
Q Consensus 2 ~~~~vi~tPGH----~~~~~~~~~~~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~nl~ 77 (140)
+.+++++|||| +||+..+.+.++++||||+||..|||++|+|.+++|..|+.. +..||++|.|||||+|..+|++
T Consensus 107 ~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGDtlf~~GcG~~FEgt~~~M~~sl~~-l~~L~~~t~iypGHeYt~~n~k 185 (265)
T KOG0813|consen 107 LEVRCLHTPGHTAGHICYYVTESTGERAIFTGDTLFGAGCGRFFEGTAEQMDSSLNE-LIALPDDTRIYPGHEYTKSNLK 185 (265)
T ss_pred EEEEEEeCCCccCCcEEEEeecCCCCCeEEeCCceeecCccchhcCCHHHHHHhHHH-hhcCCCCceEccCcccccccce
Confidence 57999999999 666665344578999999999999999999999999999985 9999999999999999999999
Q ss_pred cccccCCCcHHHHHHHHHHHHHhhcCCCC-CCccHHHHHHcCCcceecc
Q psy17909 78 FSKHVEPNNTRIAEKLKWAIEKRERKEPT-VPSTIGMVMVMGTVMGMVM 125 (140)
Q Consensus 78 fa~~~~~~n~~i~~~l~~~~~~~~~~~~~-~~stl~~E~~~Npflr~~~ 125 (140)
||.+++|.|...+++++|+++++.++.++ +|+||++|+.+|||+|...
T Consensus 186 f~~~ve~~n~~~q~~l~~~~~~~~~~~~t~~p~tl~~e~~~Npf~r~~~ 234 (265)
T KOG0813|consen 186 FARYVEPRNEVEQEKLDWLVERRSKEKPTMVPSTLGEEKLYNPFMRLKK 234 (265)
T ss_pred eeeecccccHHHHHHHHHHHHHhhccCcccChhhHHHHHhcCchhhcch
Confidence 99999999999999999999999999999 9999999999999999864
No 6
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.87 E-value=6.5e-22 Score=158.27 Aligned_cols=90 Identities=20% Similarity=0.398 Sum_probs=75.5
Q ss_pred eeEEEEEeCCe----EEEEecc---cCCCCeeEEcceecCCCccC--CCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCC
Q psy17909 2 ALGDTLFVAGA----GKFFEGD---GAFVTSPLSGDTLFVAGAGK--FFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYT 72 (140)
Q Consensus 2 ~~~~vi~tPGH----~~~~~~~---~~~~~~lFtGDtLf~g~~Gr--~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~ 72 (140)
..+++++|||| ++|+..+ ....+++||||+||.+++|| +++|++.+|++||+++|..||++++|||||+|.
T Consensus 115 ~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~g~Gr~d~~~g~~~~l~~Sl~~~l~~L~~~~~i~PGHg~~ 194 (251)
T PLN02962 115 LYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSDQLYKSVHSQIFTLPKDTLIYPAHDYK 194 (251)
T ss_pred EEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccCCcCCCCCCCCCHHHHHHHHHHHHHcCCCCeEEECCCCCC
Confidence 36899999999 5665432 12346999999999999999 789999999999987899999999999999984
Q ss_pred ccccccccccCCCcHHHHHHHHHHHHHhhcCCCCCCccHHHHHHcCCccee
Q psy17909 73 VNNLYFSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGM 123 (140)
Q Consensus 73 ~~nl~fa~~~~~~n~~i~~~l~~~~~~~~~~~~~~~stl~~E~~~Npflr~ 123 (140)
.. .++||++||++|||++.
T Consensus 195 ~~--------------------------------~~tti~~e~~~n~~l~~ 213 (251)
T PLN02962 195 GF--------------------------------TVSTVGEEMLYNPRLTK 213 (251)
T ss_pred CC--------------------------------CCcCHHHHHhhCcccCC
Confidence 21 26899999999999973
No 7
>KOG0814|consensus
Probab=99.73 E-value=9.1e-18 Score=128.51 Aligned_cols=88 Identities=19% Similarity=0.301 Sum_probs=76.9
Q ss_pred eeEEEEEeCCe----EEEEecccCCCCeeEEcceecCCCccC--CCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCccc
Q psy17909 2 ALGDTLFVAGA----GKFFEGDGAFVTSPLSGDTLFVAGAGK--FFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNN 75 (140)
Q Consensus 2 ~~~~vi~tPGH----~~~~~~~~~~~~~lFtGDtLf~g~~Gr--~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~n 75 (140)
..+++..|||| +-|+.. +...+||||+|.+.+||| |.+|.+.++|+|+..++.+||++++|||+|+|...
T Consensus 111 ~~le~ratPGHT~GC~TyV~~---d~~~aFTGDalLIRgCGRTDFQqG~~~~LyesVH~kIFTLP~d~~iYpaHdY~G~- 186 (237)
T KOG0814|consen 111 LKLEVRATPGHTNGCVTYVEH---DLRMAFTGDALLIRGCGRTDFQQGCPASLYESVHSKIFTLPEDYLIYPAHDYKGF- 186 (237)
T ss_pred EEEEEecCCCCCCceEEEEec---CcceeeecceeEEeccCccchhccChHHHHHHHhHHheeCCCceEEeeccccCce-
Confidence 35789999999 446665 367999999999999999 89999999999999999999999999999999421
Q ss_pred cccccccCCCcHHHHHHHHHHHHHhhcCCCCCCccHHHHHHcCCcceec
Q psy17909 76 LYFSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMV 124 (140)
Q Consensus 76 l~fa~~~~~~n~~i~~~l~~~~~~~~~~~~~~~stl~~E~~~Npflr~~ 124 (140)
..||+.|||++||-|.-+
T Consensus 187 -------------------------------~~stV~EEk~~NPRLTk~ 204 (237)
T KOG0814|consen 187 -------------------------------LVSTVWEEKNLNPRLTKS 204 (237)
T ss_pred -------------------------------EeeehhhhhccCcccccC
Confidence 378999999999988653
No 8
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=98.83 E-value=2.2e-08 Score=76.23 Aligned_cols=66 Identities=29% Similarity=0.310 Sum_probs=48.3
Q ss_pred eEEEEEeCCe----EEEEecccCCCCeeEEcceecCCC--ccC--CCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCC
Q psy17909 3 LGDTLFVAGA----GKFFEGDGAFVTSPLSGDTLFVAG--AGK--FFEGDGAEMHHNLNVKLAKLPNETKVFCGHEY 71 (140)
Q Consensus 3 ~~~vi~tPGH----~~~~~~~~~~~~~lFtGDtLf~g~--~Gr--~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~ 71 (140)
.+++++|||| ++|+.. ..+++|+||.+|... +++ .+..+..++++|+++......+...|+|||+.
T Consensus 139 ~~~~i~tpGHT~g~~~~~~~---~~~~l~~gD~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~v~pgHg~ 212 (252)
T COG0491 139 ELEVLHTPGHTPGHIVFLLE---DGGVLFTGDTLFAGDTGVGRLDLPGGDAAQLLASLRRLLLLLLPDTLVLPGHGP 212 (252)
T ss_pred EEEEEECCCCCCCeEEEEEC---CccEEEecceeccCCCCCccccCCCCCHHHHHHHHHHHHhccCCCCEEECCCCc
Confidence 5889999999 555554 134999999999985 555 33445899999998544333334689999997
No 9
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=98.21 E-value=3.2e-06 Score=73.40 Aligned_cols=87 Identities=14% Similarity=0.077 Sum_probs=49.8
Q ss_pred eEEEEEeCC-e----EEEEecccCCCCeeEEcce---------ecCCCccC-CCCCCH------------HHHHHHHHHH
Q psy17909 3 LGDTLFVAG-A----GKFFEGDGAFVTSPLSGDT---------LFVAGAGK-FFEGDG------------AEMHHNLNVK 55 (140)
Q Consensus 3 ~~~vi~tPG-H----~~~~~~~~~~~~~lFtGDt---------Lf~g~~Gr-~~~gd~------------~~~~~Sl~~~ 55 (140)
++++++||| | ++++.. +.++|||||. +|...+++ .....+ ....+.|. +
T Consensus 137 ~l~~i~tP~~H~pgs~~~y~~---~~~vLFsgD~fG~~~~~~~~f~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~-~ 212 (479)
T PRK05452 137 QLIFVETPMLHWPDSMMTYLT---GDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKIT-E 212 (479)
T ss_pred EEEEEECCCCCCCCceEEEEc---CCCEEEecccccCCCCchhhhcccCchHHHHHHHHHHHHHhhhhhHHHHHHHHH-H
Confidence 578999996 8 555554 4789999995 33333332 000011 12244555 4
Q ss_pred Hh--cCCCCeEEEcCCCCCccccccccccCCCcHHHHHHHHHHHHHhhc
Q psy17909 56 LA--KLPNETKVFCGHEYTVNNLYFSKHVEPNNTRIAEKLKWAIEKRER 102 (140)
Q Consensus 56 l~--~lp~~t~i~PGHg~~~~nl~fa~~~~~~n~~i~~~l~~~~~~~~~ 102 (140)
+. .|+.+ +|+||||+..+. .....++.+++|++..+++
T Consensus 213 ~~~l~l~~~-~i~p~HG~i~r~--------~~~~~l~~Y~~~~~~~~~~ 252 (479)
T PRK05452 213 ILGFNLPVD-MIATSHGVVWRD--------NPTQIVELYLKWAADYQED 252 (479)
T ss_pred HhhcCCCCC-EEECCCCceEeC--------CHHHHHHHHHHHhhccCcC
Confidence 55 45776 799999985331 0114566667777654443
No 10
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=98.09 E-value=2e-05 Score=66.57 Aligned_cols=84 Identities=12% Similarity=0.065 Sum_probs=47.0
Q ss_pred eEEEEEeCC-e----EEEEecccCCCCeeEEcceecCCCccC-CCC---CCHHH------------------HHHHHHHH
Q psy17909 3 LGDTLFVAG-A----GKFFEGDGAFVTSPLSGDTLFVAGAGK-FFE---GDGAE------------------MHHNLNVK 55 (140)
Q Consensus 3 ~~~vi~tPG-H----~~~~~~~~~~~~~lFtGDtLf~g~~Gr-~~~---gd~~~------------------~~~Sl~~~ 55 (140)
++++++||| | ++++.. +.++|||||++-...+.. +++ +..+. ..+.|+ +
T Consensus 133 ~l~~i~tP~~H~p~~~~~y~~---~~~vLFsgD~fG~~~~~~~~~~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~-~ 208 (394)
T PRK11921 133 ELIFIEAPMLHWPDSMFTYLT---GDNILFSNDAFGQHYASELMYNDLVDQGELYQEAIKYYANILTPFSPLVIKKIE-E 208 (394)
T ss_pred EEEEEeCCCCCCCCceEEEEc---CCCEEEecCcccccccCcccccccccchhHHHHHHHHHHHHHhhhHHHHHHHHH-H
Confidence 688998897 8 566654 478999999643322221 222 11111 123333 4
Q ss_pred Hh--cCCCCeEEEcCCCCCccccccccccCCCcHHHHHHHHHHHHH
Q psy17909 56 LA--KLPNETKVFCGHEYTVNNLYFSKHVEPNNTRIAEKLKWAIEK 99 (140)
Q Consensus 56 l~--~lp~~t~i~PGHg~~~~nl~fa~~~~~~n~~i~~~l~~~~~~ 99 (140)
|. .++.+ +|+||||+..+. .....++.+.+|++..
T Consensus 209 l~~~~l~~~-~i~p~HG~i~~~--------~~~~~~~~Y~~~~~~~ 245 (394)
T PRK11921 209 ILSLNLPVD-MICPSHGVIWRD--------NPLQIVEKYLEWAANY 245 (394)
T ss_pred HHhcCCCCC-EEEcCCccEEeC--------CHHHHHHHHHHHhhcC
Confidence 55 55676 799999985331 0113455566666443
No 11
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=97.98 E-value=4.1e-05 Score=55.23 Aligned_cols=62 Identities=19% Similarity=0.096 Sum_probs=45.2
Q ss_pred eEEEEEeCCe----EEEEecccCCCCeeEEcceecCCCccC-CC-----------CCCHHHHHHHHHHHHhcCCCCeEEE
Q psy17909 3 LGDTLFVAGA----GKFFEGDGAFVTSPLSGDTLFVAGAGK-FF-----------EGDGAEMHHNLNVKLAKLPNETKVF 66 (140)
Q Consensus 3 ~~~vi~tPGH----~~~~~~~~~~~~~lFtGDtLf~g~~Gr-~~-----------~gd~~~~~~Sl~~~l~~lp~~t~i~ 66 (140)
.+.+...||| .+++.. +.+++||||+++...... .. ..+.....++++ ++..++.+ .|+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~---~~~vlftGD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~-~ii 191 (194)
T PF00753_consen 117 ILFIIPGPGHGSDSLIIYLP---GGKVLFTGDLLFSNEHPNPDPDLPLRGADVRYGSNWEESIEALR-RLEALDPE-VII 191 (194)
T ss_dssp EEEEEESSSSSTTEEEEEET---TTTEEEEETTSCTTTSSSSSTSHTTTTHTTSHTTHHHHHHHHHH-HHHTSTTS-EEE
T ss_pred cccceeccccCCcceEEEeC---CCcEEEeeeEeccCCccccccccccccccccCcHHHHHHHHHHH-HHHCCCCC-EEE
Confidence 4567777877 333333 478999999999876665 22 345678888887 68899998 577
Q ss_pred cCC
Q psy17909 67 CGH 69 (140)
Q Consensus 67 PGH 69 (140)
|||
T Consensus 192 ~gH 194 (194)
T PF00753_consen 192 PGH 194 (194)
T ss_dssp ESS
T ss_pred eCc
Confidence 799
No 12
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=97.92 E-value=4.4e-05 Score=59.03 Aligned_cols=65 Identities=20% Similarity=0.249 Sum_probs=43.9
Q ss_pred EEEEEeCC-e----EEEEecccCCCCeeEEcceecCCCccC---CCC---CCHHHHHHHHHHHHhcCCCCeEEEcCCCCC
Q psy17909 4 GDTLFVAG-A----GKFFEGDGAFVTSPLSGDTLFVAGAGK---FFE---GDGAEMHHNLNVKLAKLPNETKVFCGHEYT 72 (140)
Q Consensus 4 ~~vi~tPG-H----~~~~~~~~~~~~~lFtGDtLf~g~~Gr---~~~---gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~ 72 (140)
+.|++.|| | +.++.. +..+||||.+..-.-|. ++. .|..++.+|++ ||..+|+--.|++|||-.
T Consensus 109 ~~vi~l~G~ktpGE~ALlle----d~vLi~GDl~~~~~~g~l~lLpd~k~~d~~~a~~sl~-RLa~~~~fe~lLvGdGwp 183 (199)
T PF14597_consen 109 LWVIHLPGSKTPGELALLLE----DRVLITGDLLRSHPAGSLSLLPDEKLYDPTEARASLR-RLAAYPDFEWLLVGDGWP 183 (199)
T ss_dssp EEEEEE-SSSSTTEEEEEET----TTEEEESSSEEBSSTTS-EE--GGG-S-HHHHHHHHH-HHHT-TT--EEEESBB--
T ss_pred eEEEEcCCCCCCceeEEEec----cceEEecceeeecCCCCeEECChHHcCCHHHHHHHHH-HHhccccccEEeecCCch
Confidence 67888888 6 555553 57999999877655555 553 68999999998 699997444899999985
Q ss_pred c
Q psy17909 73 V 73 (140)
Q Consensus 73 ~ 73 (140)
.
T Consensus 184 i 184 (199)
T PF14597_consen 184 I 184 (199)
T ss_dssp B
T ss_pred h
Confidence 4
No 13
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=97.10 E-value=0.0037 Score=45.31 Aligned_cols=62 Identities=24% Similarity=0.262 Sum_probs=41.4
Q ss_pred eEEEEEeCCe----EEEEecccCCCCeeEEcceecCCCccC-C---CCCCHHHHHHHHHHHHhcCCCCeEEEcCC
Q psy17909 3 LGDTLFVAGA----GKFFEGDGAFVTSPLSGDTLFVAGAGK-F---FEGDGAEMHHNLNVKLAKLPNETKVFCGH 69 (140)
Q Consensus 3 ~~~vi~tPGH----~~~~~~~~~~~~~lFtGDtLf~g~~Gr-~---~~gd~~~~~~Sl~~~l~~lp~~t~i~PGH 69 (140)
.++++++||| ++++.. ..+++|+||+.+...... . ..++.....+.++ ++...... .|+|||
T Consensus 114 ~~~~~~~~~h~~~~~~~~~~---~~~vl~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~i~~~H 183 (183)
T smart00849 114 ELEVIHTPGHTPGSIVLYLP---EGKILFTGDLLFSGGIGRTDDDGGDASASDSLESLL-KLLALDPE-LVVPGH 183 (183)
T ss_pred eEEEEECCCCCCCcEEEEEC---CCCEEEECCeeeccCCCCcccCCCCccHHHHHHHHH-HhhcCCcc-EeecCC
Confidence 5678888888 444443 267999999998876332 2 2344555667776 45555554 699998
No 14
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=94.46 E-value=0.14 Score=43.89 Aligned_cols=87 Identities=14% Similarity=0.028 Sum_probs=48.7
Q ss_pred eEEEEEe-----CCeEEEEecccCCCCeeEEcceecCCCccC-CCCCCHHH-------HH------------HHHHHHHh
Q psy17909 3 LGDTLFV-----AGAGKFFEGDGAFVTSPLSGDTLFVAGAGK-FFEGDGAE-------MH------------HNLNVKLA 57 (140)
Q Consensus 3 ~~~vi~t-----PGH~~~~~~~~~~~~~lFtGDtLf~g~~Gr-~~~gd~~~-------~~------------~Sl~~~l~ 57 (140)
+++++.+ |++++.|.. +.++|||+|.+=.-.|.. .+..+.+. ++ ..++ ++.
T Consensus 136 tL~Fi~ap~LHWPd~m~TYd~---~~kILFS~D~fG~h~~~~~~fded~~~~~~~~~~Y~~~lm~p~~~~v~~~l~-~~~ 211 (388)
T COG0426 136 TLKFIPAPFLHWPDTMFTYDP---EDKILFSCDAFGAHVCDDYRFDEDIEELLPDMRKYYANLMAPNARLVLWALK-KIK 211 (388)
T ss_pred EEEEEeCCCCCCCCceeEeec---CCcEEEccccccccccchhccccCHHHHHHHHHHHHHHhhcccHHHHHHHHh-hhc
Confidence 3555555 455666654 478999999543344553 44433222 22 2222 334
Q ss_pred cCCCCeEEEcCCCCCccccccccccCCCcHHHHHHHHHHHHHhhc
Q psy17909 58 KLPNETKVFCGHEYTVNNLYFSKHVEPNNTRIAEKLKWAIEKRER 102 (140)
Q Consensus 58 ~lp~~t~i~PGHg~~~~nl~fa~~~~~~n~~i~~~l~~~~~~~~~ 102 (140)
.++-+ .|.||||+...+ . -..-++++.+|++.+..+
T Consensus 212 ~l~i~-~IaP~HG~i~~~-------~-~~~i~~~Y~~W~~~~~~~ 247 (388)
T COG0426 212 LLKIE-MIAPSHGPIWRG-------N-PKEIVEAYRDWAEGQPKG 247 (388)
T ss_pred ccCcc-EEEcCCCceeeC-------C-HHHHHHHHHHHHccCCcc
Confidence 45556 799999996543 0 024566677777665433
No 15
>KOG4736|consensus
Probab=89.55 E-value=0.68 Score=38.33 Aligned_cols=69 Identities=16% Similarity=0.194 Sum_probs=39.0
Q ss_pred EEEEEeCCe-----EEEEecccCCCCeeEEcceecCCCccC------CC-CCCH-HHHHHHHHHHHhcCCCCeEEEcCCC
Q psy17909 4 GDTLFVAGA-----GKFFEGDGAFVTSPLSGDTLFVAGAGK------FF-EGDG-AEMHHNLNVKLAKLPNETKVFCGHE 70 (140)
Q Consensus 4 ~~vi~tPGH-----~~~~~~~~~~~~~lFtGDtLf~g~~Gr------~~-~gd~-~~~~~Sl~~~l~~lp~~t~i~PGHg 70 (140)
++|..|||| +.++...........+|| ||...--- +. ++.. ..+.+-.+++...|++ +|-|||+
T Consensus 179 ~~V~~TpGht~~~isvlv~n~~~~GTv~itGD-Lf~~~~dlde~d~i~~~e~s~d~~~kr~~r~~~v~l~D--~ivpgHg 255 (302)
T KOG4736|consen 179 VEVWKTPGHTQHDISVLVHNVDLYGTVAITGD-LFPREEDLDEKDDIMSQEGSEDNAAKRQSRNRYVCLAD--WIVPGHG 255 (302)
T ss_pred eeEeeCCCCCCcceEEEEEeecccceEEEEee-cccCCccccchhhhhhhccCCchhhhhhhhhcEEEEee--eeecCCC
Confidence 678899999 344444333467899999 55432110 11 1111 1111222335567776 6899999
Q ss_pred CCccc
Q psy17909 71 YTVNN 75 (140)
Q Consensus 71 ~~~~n 75 (140)
...+-
T Consensus 256 ~~f~v 260 (302)
T KOG4736|consen 256 PPFRV 260 (302)
T ss_pred Cceee
Confidence 97653
No 16
>PRK11539 ComEC family competence protein; Provisional
Probab=82.62 E-value=1.7 Score=40.01 Aligned_cols=71 Identities=13% Similarity=0.020 Sum_probs=39.6
Q ss_pred eeEEEEEeCCe--------EEEEecccCCCCeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCc
Q psy17909 2 ALGDTLFVAGA--------GKFFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTV 73 (140)
Q Consensus 2 ~~~~vi~tPGH--------~~~~~~~~~~~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~ 73 (140)
++++|++.|+| +|.+.-+..+..++||||. .....+++.++.. ..++.|.++.|.||..-
T Consensus 603 ~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi---------~~~~E~~Ll~~~~---~~l~~dvL~vpHHGS~t 670 (755)
T PRK11539 603 LTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDL---------EAQAEQKLLSRYW---QQLAATLLQVPHHGSNT 670 (755)
T ss_pred EEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCC---------ChHHHHHHHhcCc---cCcCCCEEEeCCCCCCC
Confidence 46889988876 2322211224568999992 1222334433221 24677899999998644
Q ss_pred cc-cccccccCC
Q psy17909 74 NN-LYFSKHVEP 84 (140)
Q Consensus 74 ~n-l~fa~~~~~ 84 (140)
+. -.|-..+.|
T Consensus 671 Sss~~fl~~v~P 682 (755)
T PRK11539 671 SSSLPFIRAVNG 682 (755)
T ss_pred CChHHHHHhcCC
Confidence 32 344444443
No 17
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=79.97 E-value=4.1 Score=34.62 Aligned_cols=36 Identities=11% Similarity=-0.046 Sum_probs=23.2
Q ss_pred eeEEEEEeCCe----EEEEecccCCCCeeEEcceecCCCcc
Q psy17909 2 ALGDTLFVAGA----GKFFEGDGAFVTSPLSGDTLFVAGAG 38 (140)
Q Consensus 2 ~~~~vi~tPGH----~~~~~~~~~~~~~lFtGDtLf~g~~G 38 (140)
.+++++.+++| .+|.... +...++||||+.|.+..+
T Consensus 127 ~~v~~~~~~H~~p~s~g~~i~~-~~~~ivytGD~~~~~~~~ 166 (422)
T TIGR00649 127 HTIEFIRITHSIPDSVGFALHT-PLGYIVYTGDFKFDNTPV 166 (422)
T ss_pred eEEEEEECCCCCcceEEEEEEe-CCcEEEECCCcCCCCCcc
Confidence 35778888777 3333221 235699999998876544
No 18
>PF01148 CTP_transf_1: Cytidylyltransferase family; InterPro: IPR000374 Phosphatidate cytidylyltransferase (2.7.7.41 from EC) [, , ] (also known as CDP- diacylglycerol synthase) (CDS) is the enzyme that catalyzes the synthesis of CDP-diacylglycerol from CTP and phosphatidate (PA): CTP + phosphatidate = diphosphate + CDP-diacylglycerol CDP-diacylglycerol is an important branch point intermediate in both prokaryotic and eukaryotic organisms. CDS is a membrane-bound enzyme.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016020 membrane
Probab=70.12 E-value=3.4 Score=31.92 Aligned_cols=33 Identities=9% Similarity=0.138 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHHHhcCCCCeEEEcCCCCCcccc
Q psy17909 44 DGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNL 76 (140)
Q Consensus 44 d~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~nl 76 (140)
-..++++|.-||-....|--.++||||...+|+
T Consensus 210 ~~gdl~~S~~KR~~~iKD~g~lipghGg~lDr~ 242 (259)
T PF01148_consen 210 AFGDLFESAIKRDAGIKDSGNLIPGHGGILDRF 242 (259)
T ss_pred HHHHHHHHHHHHhhhcccccccccCcCCcccch
Confidence 346777886667778888889999999987764
No 19
>PF08747 DUF1788: Domain of unknown function (DUF1788); InterPro: IPR014858 This entry represents a putative uncharacterised protein of length around 200 amino acids.
Probab=69.05 E-value=7.1 Score=28.26 Aligned_cols=56 Identities=25% Similarity=0.367 Sum_probs=39.2
Q ss_pred cceecCCCccC-CCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCccccccccccCCCc
Q psy17909 29 GDTLFVAGAGK-FFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNN 86 (140)
Q Consensus 29 GDtLf~g~~Gr-~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~nl~fa~~~~~~n 86 (140)
.|.+|..|+|. +|---...+.+.++.++...|= .+.|||+-. .+++.|--...++|
T Consensus 62 ~~vv~ltGvG~l~P~~R~h~lL~~l~~~~~~~pl-v~FyPG~y~-g~~l~lf~~~~~~n 118 (126)
T PF08747_consen 62 RDVVFLTGVGSLFPFIRSHELLNNLQPKFGNVPL-VVFYPGEYD-GNSLRLFGELDDDN 118 (126)
T ss_pred CcEEEEeCcchhcchhhHHHHHHHHHHHhcCCeE-EEECCceec-CceeEecCCCCCCC
Confidence 45677778898 4545678999999876666764 688999865 56666555555544
No 20
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=63.65 E-value=6.5 Score=29.10 Aligned_cols=51 Identities=18% Similarity=0.149 Sum_probs=28.5
Q ss_pred ccCCCCCC------HHHHHHHHHHHHhcCCC----CeEEEcCCCCCccccccccccCCCcHHHHHHHHHHHHHh
Q psy17909 37 AGKFFEGD------GAEMHHNLNVKLAKLPN----ETKVFCGHEYTVNNLYFSKHVEPNNTRIAEKLKWAIEKR 100 (140)
Q Consensus 37 ~Gr~~~gd------~~~~~~Sl~~~l~~lp~----~t~i~PGHg~~~~nl~fa~~~~~~n~~i~~~l~~~~~~~ 100 (140)
.|-+|+|| ++.-+.+|++-+..|.+ -..+||||..+ .++.+.-.+|++++.
T Consensus 54 LGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG-------------~eE~~av~~~~~~L~ 114 (140)
T PF06962_consen 54 LGYLPGGDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGG-------------KEESEAVEEFLASLD 114 (140)
T ss_dssp ESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHH-------------HHHHHHHHHHHHTS-
T ss_pred CCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCC-------------HHHHHHHHHHHHhCC
Confidence 46688887 56667777654443322 35689999984 355666666776554
No 21
>PRK11624 cdsA CDP-diglyceride synthase; Provisional
Probab=61.77 E-value=5.3 Score=32.63 Aligned_cols=33 Identities=9% Similarity=0.150 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCeEEEcCCCCCccc
Q psy17909 43 GDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNN 75 (140)
Q Consensus 43 gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~n 75 (140)
|...|+.+|.-||-....|.-.++||||.-.+.
T Consensus 231 ~~~GDL~ES~lKR~~gVKDSG~llPGHGGiLDR 263 (285)
T PRK11624 231 SVLGDLTESMFKREAGIKDSGHLIPGHGGILDR 263 (285)
T ss_pred HHHhHHHHHHHhhccCCCCCcCcCCCcCcchhh
Confidence 345678888777778888888999999996654
No 22
>COG0575 CdsA CDP-diglyceride synthetase [Lipid metabolism]
Probab=59.93 E-value=6.4 Score=31.61 Aligned_cols=30 Identities=10% Similarity=0.205 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhcCCCCeEEEcCCCCCccc
Q psy17909 46 AEMHHNLNVKLAKLPNETKVFCGHEYTVNN 75 (140)
Q Consensus 46 ~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~n 75 (140)
.++.+|.-||.....|.-.+.||||...++
T Consensus 217 GDL~eS~iKR~~gvKDsg~liPGHGGilDR 246 (265)
T COG0575 217 GDLFESYIKRLLGIKDSGWLIPGHGGILDR 246 (265)
T ss_pred hhHHHHHHHHccCCCCcCCCCCCcCccccc
Confidence 567887766788888888999999997654
No 23
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=58.79 E-value=19 Score=25.36 Aligned_cols=48 Identities=6% Similarity=-0.094 Sum_probs=30.5
Q ss_pred CeeEEcceecCCCccC--CCCCCHHHHHHHHHHHHhcCCCCeEEE-cCCCC
Q psy17909 24 TSPLSGDTLFVAGAGK--FFEGDGAEMHHNLNVKLAKLPNETKVF-CGHEY 71 (140)
Q Consensus 24 ~~lFtGDtLf~g~~Gr--~~~gd~~~~~~Sl~~~l~~lp~~t~i~-PGHg~ 71 (140)
+++|.||++..|.+-. +.+....++.+.+...+...+++.+++ -|...
T Consensus 2 ~~~~~Gds~~~g~~~n~g~~G~~~~~~~~~~~~~~~~~~pd~vvi~~G~ND 52 (157)
T cd01833 2 RIMPLGDSITWGDKDHEGHSGYLIDQIAAAAADWVLAAKPDVVLLHLGTND 52 (157)
T ss_pred ceeecCCceeecCCCCCCCCCccHHHHHHHhhhccccCCCCEEEEeccCcc
Confidence 4789999998883332 555567777777755555666654444 45444
No 24
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=44.83 E-value=30 Score=27.11 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=23.9
Q ss_pred eeEEcceecCCCccC-CCCCCHHHHHHHHHHHHh
Q psy17909 25 SPLSGDTLFVAGAGK-FFEGDGAEMHHNLNVKLA 57 (140)
Q Consensus 25 ~lFtGDtLf~g~~Gr-~~~gd~~~~~~Sl~~~l~ 57 (140)
++|+||.++...+.. ...++...+++.++..+.
T Consensus 2 i~~~GDi~~~~~~~~~~~~~~~~~~~~~v~~~l~ 35 (250)
T PF09587_consen 2 IAFVGDIMLGRGVYQRAEKGGFDYIFEDVKPLLQ 35 (250)
T ss_pred EEEEeccccCcchhhhcccCChHHHHHHHHHHHh
Confidence 689999998766554 445577888888876444
No 25
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=42.48 E-value=1.1e+02 Score=21.76 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=26.7
Q ss_pred eeEEcceecCCCccC--C----------CCCCHHHHHHHHHHHHhcCCCCeEEEcCCCC
Q psy17909 25 SPLSGDTLFVAGAGK--F----------FEGDGAEMHHNLNVKLAKLPNETKVFCGHEY 71 (140)
Q Consensus 25 ~lFtGDtLf~g~~Gr--~----------~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~ 71 (140)
++|.||+++.|..-. + .+....++.+.+.+.+..-|+-.++..|...
T Consensus 2 v~~~GdSi~~~~~~~~~~~~~~v~n~g~~G~~~~~~~~~l~~~~~~~pd~vvl~~G~ND 60 (169)
T cd01828 2 LVFLGDSLTEGGPWALLFPDVKVANRGISGDTTRGLLARLDEDVALQPKAIFIMIGIND 60 (169)
T ss_pred EEEecchhhccCcHHHhcCCCceEecCcccccHHHHHHHHHHHhccCCCEEEEEeeccC
Confidence 688999988753211 1 2335667777776444233555555556544
No 26
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=40.77 E-value=1.1e+02 Score=21.70 Aligned_cols=49 Identities=16% Similarity=0.184 Sum_probs=29.4
Q ss_pred CeeEEcceecCCCccC-------------CCCCCHHHHHHHHHHHHhc-CCCCeEEEcCCCCC
Q psy17909 24 TSPLSGDTLFVAGAGK-------------FFEGDGAEMHHNLNVKLAK-LPNETKVFCGHEYT 72 (140)
Q Consensus 24 ~~lFtGDtLf~g~~Gr-------------~~~gd~~~~~~Sl~~~l~~-lp~~t~i~PGHg~~ 72 (140)
+++|.||++..|-... +.+.+..++.+.+...+.. -|+-.+|+.|-...
T Consensus 2 ~iv~~GdS~t~~~~~~~~~~~~~~v~n~g~~G~t~~~~~~~~~~~~~~~~pd~v~i~~G~ND~ 64 (174)
T cd01841 2 NIVFIGDSLFEGWPLYEAEGKGKTVNNLGIAGISSRQYLEHIEPQLIQKNPSKVFLFLGTNDI 64 (174)
T ss_pred CEEEEcchhhhcCchhhhccCCCeEEecccccccHHHHHHHHHHHHHhcCCCEEEEEeccccC
Confidence 5899999987643211 1233567777777444544 45556666676553
No 27
>PF10996 Beta-Casp: Beta-Casp domain; InterPro: IPR022712 The beta-CASP domain is found C-terminal to the beta-lactamase domain in pre-mRNA 3'-end-processing endonuclease. The active site of this enzyme is located at the interface of these two domains []. ; PDB: 2YCB_B 2XR1_B 2I7T_A 2I7V_A 2I7X_A 3A4Y_A 3IE2_D 3IE1_B 3IE0_D 2DKF_D ....
Probab=36.95 E-value=86 Score=21.39 Aligned_cols=39 Identities=21% Similarity=0.262 Sum_probs=24.7
Q ss_pred CCCeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCC
Q psy17909 22 FVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEY 71 (140)
Q Consensus 22 ~~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~ 71 (140)
++.++|+++ |.+.+|....+++ ++..=|.+++|++|+..
T Consensus 80 ~p~Vvias~-------gml~~G~s~~~l~----~~~~d~~n~Ii~~gy~~ 118 (126)
T PF10996_consen 80 GPKVVIASS-------GMLEGGRSRHYLK----RLASDPRNTIIFTGYQA 118 (126)
T ss_dssp SSEEEEESS-------TTSSSSHHHHHHH----HHTTSTTSEEEESSS--
T ss_pred CCeEEEeCC-------CCCCCCHHHHHHH----HHcCCCCCeEEEecCCC
Confidence 355677766 3345565555553 46677899999999876
No 28
>COG2062 SixA Phosphohistidine phosphatase SixA [Signal transduction mechanisms]
Probab=36.72 E-value=45 Score=25.20 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=27.8
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCcccc
Q psy17909 40 FFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNL 76 (140)
Q Consensus 40 ~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~nl 76 (140)
.|++|+..+.+.|+. +.. .-.+++..||.+...++
T Consensus 82 ~p~~d~~~~l~~l~~-~~d-~v~~vllVgH~P~l~~l 116 (163)
T COG2062 82 LPNGDPGTVLDYLEA-LGD-GVGSVLLVGHNPLLEEL 116 (163)
T ss_pred CCCCCHHHHHHHHHH-hcc-cCceEEEECCCccHHHH
Confidence 678999999999984 655 45679999999976653
No 29
>PF03568 Peptidase_C50: Peptidase family C50; InterPro: IPR005314 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C50 (separase family, clan CD). The active site residues for members of this family and family C14 occur in the same order in the sequence: H,C. The separases are caspase-like proteases, which plays a central role in the chromosome segregation. In yeast they cleave the rad21 subunit of the cohesin complex at the onset of anaphase. During most of the cell cycle, separase is inactivated by the securin/cut2 protein, which probably covers its active site. ; GO: 0008233 peptidase activity, 0006508 proteolysis, 0005634 nucleus
Probab=32.85 E-value=53 Score=27.78 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=10.9
Q ss_pred CCeEEEcCCCCCc
Q psy17909 61 NETKVFCGHEYTV 73 (140)
Q Consensus 61 ~~t~i~PGHg~~~ 73 (140)
.+..||+|||.+.
T Consensus 309 ~dlf~Y~GHG~G~ 321 (383)
T PF03568_consen 309 SDLFLYCGHGSGE 321 (383)
T ss_pred CCeEEEecCCcHH
Confidence 5689999999964
No 30
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=32.04 E-value=69 Score=22.77 Aligned_cols=47 Identities=15% Similarity=0.111 Sum_probs=26.2
Q ss_pred eeEEcceecCCCccC----CCC--------CCHHHHHHHHHHHHh--cCCCCeEEEcCCCC
Q psy17909 25 SPLSGDTLFVAGAGK----FFE--------GDGAEMHHNLNVKLA--KLPNETKVFCGHEY 71 (140)
Q Consensus 25 ~lFtGDtLf~g~~Gr----~~~--------gd~~~~~~Sl~~~l~--~lp~~t~i~PGHg~ 71 (140)
++|.||+++.|.-.. +|+ .+..+..+.+++.+. ..|+-.+|+-|-..
T Consensus 2 v~~~GDSv~~~~~~~~~~~~p~~~i~a~~g~~~~~~~~~l~~~~~~~~~~d~vvi~lGtNd 62 (150)
T cd01840 2 ITAIGDSVMLDSSPALQEIFPNIQIDAKVGRQMSEAPDLIRQLKDSGKLRKTVVIGLGTNG 62 (150)
T ss_pred eeEEeehHHHchHHHHHHHCCCCEEEeeecccHHHHHHHHHHHHHcCCCCCeEEEEecCCC
Confidence 678899999874222 442 344555555543222 35665555656554
No 31
>cd07397 MPP_DevT Myxococcus xanthus DevT and related proteins, metallophosphatase domain. DevT is a component in the C-signal response pathway in Myxococcus xanthus that stimulates the developmentally regulated expression of the FruA response regulator protein and is required for methylation of FrzCD during fruiting body formation. DevT mutants having an in-frame deletion in the devT gene, display delayed aggregation and a cell autonomous sporulation defect. DevT belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomy
Probab=31.60 E-value=1.8e+02 Score=23.27 Aligned_cols=38 Identities=8% Similarity=-0.033 Sum_probs=29.3
Q ss_pred CCCeEEEcCCCCCccccccccccCC----------CcHHHHHHHHHHH
Q psy17909 60 PNETKVFCGHEYTVNNLYFSKHVEP----------NNTRIAEKLKWAI 97 (140)
Q Consensus 60 p~~t~i~PGHg~~~~nl~fa~~~~~----------~n~~i~~~l~~~~ 97 (140)
+++..|+.+|++...-...+.++|. .++.+++.+++++
T Consensus 145 ~~~~~VliaH~~~~G~g~~~~~~cg~d~~~~~~~~G~~~l~~ai~~~~ 192 (238)
T cd07397 145 PDLPLILLAHNGPSGLGSDAEDPCGRDWKPPGGDWGDPDLALAISQIQ 192 (238)
T ss_pred CCCCeEEEeCcCCcCCCcccccccccccCCcCCCCCCHHHHHHHHHHh
Confidence 4566899999998777777777554 4578888888776
No 32
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=31.45 E-value=99 Score=23.98 Aligned_cols=45 Identities=16% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCeeEEcceecCCCccCCCCCCHHHHHHHHHH--HHhcCCCC--eEEEcC-CCCC
Q psy17909 23 VTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNV--KLAKLPNE--TKVFCG-HEYT 72 (140)
Q Consensus 23 ~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~--~l~~lp~~--t~i~PG-Hg~~ 72 (140)
.-++|+||. +-+|- ..+.++..+.+++ ++...+.+ +...|| |+-+
T Consensus 44 D~Vi~lGDL-~D~G~----~~~~~e~~e~l~Rf~~If~~~~~~~~~~VpGNHDIG 93 (195)
T cd08166 44 DIVIFLGDL-MDEGS----IANDDEYYSYVQRFINIFEVPNGTKIIYLPGDNDIG 93 (195)
T ss_pred CEEEEeccc-cCCCC----CCCHHHHHHHHHHHHHHhcCCCCCcEEEECCCCCcC
Confidence 458999994 54331 2234444444432 23333433 344666 6654
No 33
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=30.90 E-value=2e+02 Score=20.45 Aligned_cols=28 Identities=14% Similarity=0.260 Sum_probs=15.7
Q ss_pred CHHHHHHHHHHHHhcC-CCCeEEEcCCCC
Q psy17909 44 DGAEMHHNLNVKLAKL-PNETKVFCGHEY 71 (140)
Q Consensus 44 d~~~~~~Sl~~~l~~l-p~~t~i~PGHg~ 71 (140)
...++.+.+.+.+..+ |+-.+|+.|-..
T Consensus 34 ~~~~~~~~~~~~~~~~~p~~vvi~~G~ND 62 (171)
T cd04502 34 TLADCLHYFDRLVLPYQPRRVVLYAGDND 62 (171)
T ss_pred hHHHHHHHHHhhhccCCCCEEEEEEecCc
Confidence 4566766666544443 444555566655
No 34
>PHA02546 47 endonuclease subunit; Provisional
Probab=30.57 E-value=94 Score=25.69 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=24.2
Q ss_pred CCeeEEcceecCCCccCCCCCCHHHHHHH-HHHHHhcCCCCeEEEcC-CCCCc
Q psy17909 23 VTSPLSGDTLFVAGAGKFFEGDGAEMHHN-LNVKLAKLPNETKVFCG-HEYTV 73 (140)
Q Consensus 23 ~~~lFtGDtLf~g~~Gr~~~gd~~~~~~S-l~~~l~~lp~~t~i~PG-Hg~~~ 73 (140)
.-++++||. |-... -+......+... +.+++...+-.+.+.+| |+...
T Consensus 41 D~VliaGDl-fD~~~--~~~~~~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~~ 90 (340)
T PHA02546 41 TTWIQLGDT-FDVRK--AITQNTMNFVREKIFDLLKEAGITLHVLVGNHDMYY 90 (340)
T ss_pred CEEEECCcc-cCCCC--CCCHHHHHHHHHHHHHHHHHCCCeEEEEccCCCccc
Confidence 357999995 53211 111112223333 33345444445677787 88643
No 35
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=30.18 E-value=91 Score=21.60 Aligned_cols=11 Identities=18% Similarity=0.105 Sum_probs=7.9
Q ss_pred CCeeEEcceec
Q psy17909 23 VTSPLSGDTLF 33 (140)
Q Consensus 23 ~~~lFtGDtLf 33 (140)
.-++++||.+-
T Consensus 37 d~vi~~GDl~~ 47 (144)
T cd07400 37 DLVVITGDLTQ 47 (144)
T ss_pred CEEEECCCCCC
Confidence 34799999643
No 36
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=30.14 E-value=2.2e+02 Score=20.83 Aligned_cols=76 Identities=12% Similarity=0.175 Sum_probs=51.0
Q ss_pred CCeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCC-eEEEcCCCCCccccccccccCCCcHHHHHHHHHHHHHhh
Q psy17909 23 VTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNE-TKVFCGHEYTVNNLYFSKHVEPNNTRIAEKLKWAIEKRE 101 (140)
Q Consensus 23 ~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~-t~i~PGHg~~~~nl~fa~~~~~~n~~i~~~l~~~~~~~~ 101 (140)
..+|.+||.++++-.-..-....+++.+.+++.+....+. ..||-.- ++.+-.+++.+.+...
T Consensus 93 A~vvv~~~~a~Vav~~~~~~~~~~~i~~~V~~~v~~~~p~~~~V~Vs~----------------D~~~~~ri~~~~~~~~ 156 (177)
T PF09580_consen 93 ATVVVTDDNAYVAVDLDFNRFNTKKIKKKVEKAVKSADPRIYNVYVST----------------DPDIFDRIRNLANRIR 156 (177)
T ss_pred EEEEEECCEEEEEEEecccccchhHHHHHHHHHHHHhCCCccEEEEEc----------------CHHHHHHHHHHHHHHH
Confidence 4578899988875333222466788888888888775443 4566543 4577788888888888
Q ss_pred cCCCCCCccHHHHHH
Q psy17909 102 RKEPTVPSTIGMVMV 116 (140)
Q Consensus 102 ~~~~~~~stl~~E~~ 116 (140)
.|.|. +.+..|..
T Consensus 157 ~g~~~--~~~~~~~~ 169 (177)
T PF09580_consen 157 NGRPV--SGFNDEIK 169 (177)
T ss_pred CCCCh--HHHHHHHH
Confidence 88763 66666643
No 37
>TIGR00249 sixA phosphohistidine phosphatase SixA.
Probab=29.54 E-value=70 Score=23.22 Aligned_cols=33 Identities=18% Similarity=0.088 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCcc
Q psy17909 41 FEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVN 74 (140)
Q Consensus 41 ~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~ 74 (140)
++++..++.+-|+. +..-..+++++.||++...
T Consensus 81 p~~~~~~~~~~l~~-~~~~~~~~vliVgH~P~i~ 113 (152)
T TIGR00249 81 PCGDIGLVSDYLEA-LTNEGVASVLLVSHLPLVG 113 (152)
T ss_pred CCCCHHHHHHHHHH-HHhcCCCEEEEEeCCCCHH
Confidence 35666666666663 3322345789999999653
No 38
>COG1360 MotB Flagellar motor protein [Cell motility and secretion]
Probab=28.69 E-value=2.9e+02 Score=21.76 Aligned_cols=68 Identities=16% Similarity=0.170 Sum_probs=44.2
Q ss_pred CCCeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCccccccccccCCCcHHHHHHHH
Q psy17909 22 FVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNTRIAEKLK 94 (140)
Q Consensus 22 ~~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~nl~fa~~~~~~n~~i~~~l~ 94 (140)
...+.++||.+|..|--.+.. ....++.-+.+.|..++...+..-||-. |.-++.. .++|++|-....
T Consensus 125 gl~i~i~~~~~F~~gsa~~~~-~~~~~l~~ia~~l~~~~~~~I~I~GHTD---n~p~~~~-~~sNWeLS~aRA 192 (244)
T COG1360 125 GLVISISDSLMFASGSAVVQP-EFRDLLLKIAKLLADIPNGNIRIEGHTD---NVPIKGS-FYSNWELSAARA 192 (244)
T ss_pred ccEEEeeccccccccccccCH-HHHHHHHHHHHHHhhcCCCeEEEEeCCC---CCCcCCC-CCchHHHHHHHH
Confidence 345788899888644222222 3345555555566677763477889976 6677888 889988766543
No 39
>PLN02594 phosphatidate cytidylyltransferase
Probab=27.22 E-value=49 Score=28.04 Aligned_cols=34 Identities=9% Similarity=-0.045 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHhcCCCCeEEEcCCCCCccccc
Q psy17909 44 DGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLY 77 (140)
Q Consensus 44 d~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~nl~ 77 (140)
-..++.+|.-||-..+.|--.+.||||...+..+
T Consensus 250 ~fGdlfaS~~KR~~~IKDfG~~IPGHGGilDRfD 283 (342)
T PLN02594 250 PFGGFFASGFKRAFKIKDFGDSIPGHGGITDRMD 283 (342)
T ss_pred HhhhHHHHHHHHccCCCcccCccCCCcccccccc
Confidence 3456788876677788887789999999777643
No 40
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=27.00 E-value=1.1e+02 Score=24.26 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=23.3
Q ss_pred CeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcC-CCC
Q psy17909 24 TSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCG-HEY 71 (140)
Q Consensus 24 ~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PG-Hg~ 71 (140)
-+++|||..- .++.+++.... +.+..++....+.|| |+.
T Consensus 58 ~vvitGDl~~--------~~~~~~~~~~~-~~l~~l~~Pv~~v~GNHD~ 97 (275)
T PRK11148 58 LIVATGDLAQ--------DHSSEAYQHFA-EGIAPLRKPCVWLPGNHDF 97 (275)
T ss_pred EEEECCCCCC--------CCCHHHHHHHH-HHHhhcCCcEEEeCCCCCC
Confidence 3789999643 23444443333 356666656677777 775
No 41
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=26.21 E-value=1.4e+02 Score=22.50 Aligned_cols=39 Identities=26% Similarity=0.274 Sum_probs=20.5
Q ss_pred CeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcC-CCC
Q psy17909 24 TSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCG-HEY 71 (140)
Q Consensus 24 ~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PG-Hg~ 71 (140)
-++++||.+-. ++.+++ +.+.+.+..+.-.....+| |+.
T Consensus 43 ~vi~~GDl~~~--------~~~~~~-~~~~~~l~~~~~p~~~v~GNHD~ 82 (240)
T cd07402 43 LVLVTGDLTDD--------GSPESY-ERLRELLAALPIPVYLLPGNHDD 82 (240)
T ss_pred EEEECccCCCC--------CCHHHH-HHHHHHHhhcCCCEEEeCCCCCC
Confidence 47999995432 232222 2232234444444567777 775
No 42
>PLN02953 phosphatidate cytidylyltransferase
Probab=26.07 E-value=47 Score=28.81 Aligned_cols=33 Identities=9% Similarity=0.131 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHhcCCCCeEEEcCCCCCcccc
Q psy17909 44 DGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNL 76 (140)
Q Consensus 44 d~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~nl 76 (140)
-..++.+|.-||-..+.|.-.++||||...+.+
T Consensus 348 ~~GDL~eS~iKR~~gVKDsG~liPGHGGiLDR~ 380 (403)
T PLN02953 348 VFGDLTESMIKRDAGVKDSGSLIPGHGGILDRV 380 (403)
T ss_pred HhhHHHHHHHhHccCCCCccccCCCCCcchhhH
Confidence 345777886667777888778999999976543
No 43
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=25.82 E-value=1.6e+02 Score=26.79 Aligned_cols=50 Identities=16% Similarity=0.193 Sum_probs=27.2
Q ss_pred CCCeeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCccc-cccccccCC
Q psy17909 22 FVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNN-LYFSKHVEP 84 (140)
Q Consensus 22 ~~~~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~n-l~fa~~~~~ 84 (140)
+..+|||||. +.+.++. +.+....++-|.+..|-||...++ -.|-..+.|
T Consensus 574 ~~~~L~tGD~----------~~~~E~~---l~~~~~~l~~dvLk~~HHGS~~Sss~~fl~~v~P 624 (662)
T TIGR00361 574 GNSWLLTGDL----------EAEGEQE---VMRVFPNIKADVLQVGHHGSKTSTSEELIQQVQP 624 (662)
T ss_pred CeeEEEecCC----------CHHHHHH---HHhcccCcCccEEEeCCCCCCCCChHHHHHhcCC
Confidence 4568999995 2222332 221234566778888888764433 334444433
No 44
>cd00472 Ribosomal_L24e_L24 Ribosomal protein L24e/L24 is a ribosomal protein found in eukaryotes (L24) and in archaea (L24e, distinct from archaeal L24). L24e/L24 is located on the surface of the large subunit, adjacent to proteins L14 and L3, and near the translation factor binding site. L24e/L24 appears to play a role in the kinetics of peptide synthesis, and may be involved in interactions between the large and small subunits, either directly or through other factors. In mouse, a deletion mutation in L24 has been identified as the cause for the belly spot and tail (Bst) mutation that results in disrupted pigmentation, somitogenesis and retinal cell fate determination. L24 may be an important protein in eukaryotic reproduction: in shrimp, L24 expression is elevated in the ovary, suggesting a role in oogenesis, and in Arabidopsis, L24 has been proposed to have a specific function in gynoecium development. No protein with sequence or structural homology to L24e/L24 has been identifi
Probab=25.20 E-value=31 Score=21.40 Aligned_cols=9 Identities=33% Similarity=0.597 Sum_probs=7.5
Q ss_pred eEEEcCCCC
Q psy17909 63 TKVFCGHEY 71 (140)
Q Consensus 63 t~i~PGHg~ 71 (140)
..|+||||-
T Consensus 11 ~~I~PG~G~ 19 (54)
T cd00472 11 YKIYPGHGK 19 (54)
T ss_pred CeecCCCcc
Confidence 379999986
No 45
>PF01246 Ribosomal_L24e: Ribosomal protein L24e; InterPro: IPR000988 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeabacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families [] consists of mammalian ribosomal protein L24; yeast ribosomal protein L30A/B (Rp29) (YL21); Kluyveromyces lactis ribosomal protein L30; Arabidopsis thaliana ribosomal protein L24 homolog; Haloarcula marismortui ribosomal protein HL21/HL22; and Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ1201. These proteins have 60 to 160 amino-acid residues. This entry represents proteins related to the L24e ribosomal proteins.; PDB: 2ZKR_u 1VQ9_U 1VQL_U 1KD1_V 1VQP_U 3CCM_U 3CD6_U 3CCL_U 3CCR_U 1Q86_V ....
Probab=25.17 E-value=31 Score=22.58 Aligned_cols=8 Identities=38% Similarity=0.750 Sum_probs=6.3
Q ss_pred EEEcCCCC
Q psy17909 64 KVFCGHEY 71 (140)
Q Consensus 64 ~i~PGHg~ 71 (140)
.||||||-
T Consensus 12 ~I~PG~G~ 19 (71)
T PF01246_consen 12 KIYPGHGK 19 (71)
T ss_dssp EE-SSSSE
T ss_pred ccCCCCCe
Confidence 79999996
No 46
>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase. This model represents LpxH, UDP-2,3-diacylglucosamine hydrolase, and essential enzyme in E. coli that catalyzes the fourth step in lipid A biosynthesis. Note that Pseudomonas aeruginosa has both a member of this family that shares this function and a more distant homolog, designated LpxH2, that does not. Many species that produce lipid A lack an lpxH gene in this family; some of those species have an lpxH2 gene instead, although for which the function is unknown.
Probab=24.79 E-value=1.1e+02 Score=23.49 Aligned_cols=10 Identities=20% Similarity=0.175 Sum_probs=7.5
Q ss_pred CCeeEEccee
Q psy17909 23 VTSPLSGDTL 32 (140)
Q Consensus 23 ~~~lFtGDtL 32 (140)
.-++++||.+
T Consensus 32 d~lii~GDi~ 41 (231)
T TIGR01854 32 DALYILGDLF 41 (231)
T ss_pred CEEEEcCcee
Confidence 4589999953
No 47
>smart00854 PGA_cap Bacterial capsule synthesis protein PGA_cap. This protein is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein.
Probab=24.28 E-value=83 Score=24.38 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=18.0
Q ss_pred eeEEcceecCCCccCCCCCCHHHHHHHHHHHH
Q psy17909 25 SPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKL 56 (140)
Q Consensus 25 ~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l 56 (140)
++|+||.++... +...+...+++.++..+
T Consensus 2 i~~~GDi~~~~~---~~~~~~~~~~~~v~~~~ 30 (239)
T smart00854 2 LSFVGDVMLGRG---VYKADFSPPFAGVKPLL 30 (239)
T ss_pred EEEEeeecccCc---ccccCcchHHHHHHHHH
Confidence 689999887543 33344556666666544
No 48
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=24.25 E-value=1.1e+02 Score=26.05 Aligned_cols=38 Identities=21% Similarity=0.390 Sum_probs=26.7
Q ss_pred eeEEcceecCCCccCCCCCCHHHHHHHHHHHHhcCCCCeEEEcCCCC
Q psy17909 25 SPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEY 71 (140)
Q Consensus 25 ~lFtGDtLf~g~~Gr~~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~ 71 (140)
-++|||..| ..+.++-.+.+...+..+.+| ++++|=.+
T Consensus 53 TiiCGDnyf--------~en~eea~~~i~~mv~~~~pD-~viaGPaF 90 (349)
T PF07355_consen 53 TIICGDNYF--------NENKEEALKKILEMVKKLKPD-VVIAGPAF 90 (349)
T ss_pred EEEECcchh--------hhCHHHHHHHHHHHHHhcCCC-EEEEcCCc
Confidence 477888766 467777777776677888888 57777443
No 49
>PF08384 NPP: Pro-opiomelanocortin, N-terminal region; InterPro: IPR013593 This domain represents the N-terminal peptide of pro-opiomelanocortin (NPP). It is thought to represent an important pituitary peptide, given its high yield from pituitary glands, and exhibits a potent in vitro aldosterone-stimulating activity [].
Probab=23.97 E-value=69 Score=19.24 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhcCCCCeEEEcCCCC
Q psy17909 45 GAEMHHNLNVKLAKLPNETKVFCGHEY 71 (140)
Q Consensus 45 ~~~~~~Sl~~~l~~lp~~t~i~PGHg~ 71 (140)
...|++=|+.--..+-.++-||||++-
T Consensus 14 E~~lleCi~~Ck~dlsaEsPv~PGn~h 40 (45)
T PF08384_consen 14 ESNLLECIQACKSDLSAESPVFPGNGH 40 (45)
T ss_pred cHHHHHHHHHccccccCCCCccCCCcc
Confidence 355666665322457788999999986
No 50
>COG1329 Transcriptional regulators, similar to M. xanthus CarD [Transcription]
Probab=23.77 E-value=49 Score=25.26 Aligned_cols=13 Identities=15% Similarity=0.192 Sum_probs=10.7
Q ss_pred CCCeEEEcCCCCC
Q psy17909 60 PNETKVFCGHEYT 72 (140)
Q Consensus 60 p~~t~i~PGHg~~ 72 (140)
+.+.+|||+||-+
T Consensus 7 ~Gd~VVYP~HGvG 19 (166)
T COG1329 7 IGDHVVYPAHGVG 19 (166)
T ss_pred CCCEEEecCCCce
Confidence 5677999999975
No 51
>PRK10848 phosphohistidine phosphatase; Provisional
Probab=23.69 E-value=1e+02 Score=22.64 Aligned_cols=32 Identities=22% Similarity=0.111 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCeEEEcCCCCCcc
Q psy17909 42 EGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVN 74 (140)
Q Consensus 42 ~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~~~ 74 (140)
+++.....+-++ .+..-+.++++..||.+...
T Consensus 82 ~~~~~~~~~~l~-~~~~~~~~~vllVgH~P~l~ 113 (159)
T PRK10848 82 CGDVGLVSAYLQ-ALANEGVASVLVISHLPLVG 113 (159)
T ss_pred CCCHHHHHHHHH-HHHhcCCCeEEEEeCcCcHH
Confidence 445533333333 23333456899999999654
No 52
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=23.28 E-value=1.1e+02 Score=25.05 Aligned_cols=30 Identities=17% Similarity=0.180 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCeEEEcCCCCC
Q psy17909 41 FEGDGAEMHHNLNVKLAKLPNETKVFCGHEYT 72 (140)
Q Consensus 41 ~~gd~~~~~~Sl~~~l~~lp~~t~i~PGHg~~ 72 (140)
.+.....+.+.+. .+..+..+ .|+|+|.-.
T Consensus 204 ~~~~~~~l~~~~~-~l~el~v~-~i~pcHCTg 233 (259)
T COG1237 204 IGASEERLEEVAD-YLKELGVE-KIYPCHCTG 233 (259)
T ss_pred CCCcHHHHHHHHH-HHHhcCCC-eEEecCCCC
Confidence 4555677788887 68889887 799999874
No 53
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=23.18 E-value=4.1e+02 Score=21.54 Aligned_cols=58 Identities=19% Similarity=0.121 Sum_probs=39.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCeEEE--cCCCCCccccccccccCCCcHHHHHHHHHHHHHhh
Q psy17909 42 EGDGAEMHHNLNVKLAKLPNETKVF--CGHEYTVNNLYFSKHVEPNNTRIAEKLKWAIEKRE 101 (140)
Q Consensus 42 ~gd~~~~~~Sl~~~l~~lp~~t~i~--PGHg~~~~nl~fa~~~~~~n~~i~~~l~~~~~~~~ 101 (140)
.-+.+++++-+...+..+|+++.|+ .+|.+ +.+.++-.+.-+...+.+.+++.-+.++
T Consensus 234 ~~~~~e~~~~~~~~l~~l~~~~~i~Rl~~~~~--~~~~l~~~~~~~k~~~l~~i~~~l~~~~ 293 (302)
T TIGR01212 234 TLSLEEYISLACDFLEHLPPEVVIHRISGDAP--RETLIAPEWCKNKWEIMNKISEELERRG 293 (302)
T ss_pred CCCHHHHHHHHHHHHHhCCcCeEEEEecCCCC--ccceEcccccccHHHHHHHHHHHHHHcC
Confidence 3356777777776778899987775 56665 4466676666677777777776655543
No 54
>KOG1722|consensus
Probab=21.10 E-value=40 Score=25.19 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=9.5
Q ss_pred cCCCCeEEEcCCCC
Q psy17909 58 KLPNETKVFCGHEY 71 (140)
Q Consensus 58 ~lp~~t~i~PGHg~ 71 (140)
.+.. ..||||||-
T Consensus 7 sFSG-~KIyPG~G~ 19 (155)
T KOG1722|consen 7 SFSG-YKIYPGHGR 19 (155)
T ss_pred eccC-ceecCCCce
Confidence 3444 379999997
No 55
>cd07381 MPP_CapA CapA and related proteins, metallophosphatase domain. CapA is one of three membrane-associated enzymes in Bacillus anthracis that is required for synthesis of gamma-polyglutamic acid (PGA), a major component of the bacterial capsule. The YwtB and PgsA proteins of Bacillus subtilis are closely related to CapA and are also included in this alignment model. CapA belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal
Probab=20.44 E-value=1.3e+02 Score=23.22 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=21.5
Q ss_pred eeEEcceecCCCccC---CCCCCHHHHHHHHHHHHh
Q psy17909 25 SPLSGDTLFVAGAGK---FFEGDGAEMHHNLNVKLA 57 (140)
Q Consensus 25 ~lFtGDtLf~g~~Gr---~~~gd~~~~~~Sl~~~l~ 57 (140)
++|+||.++....-. ....+...+++.++..+.
T Consensus 1 i~~~GD~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 36 (239)
T cd07381 1 LAFVGDIMLGRGVYDSPADRKYDFDPLFEDVKPLLR 36 (239)
T ss_pred CeEEEEEccCcccccccccCCCCchhHHHHHHHHHh
Confidence 479999988654432 233566777888775444
Done!