RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17909
(140 letters)
>gnl|CDD|178088 PLN02469, PLN02469, hydroxyacylglutathione hydrolase.
Length = 258
Score = 126 bits (317), Expect = 9e-37
Identities = 48/94 (51%), Positives = 65/94 (69%)
Query: 28 SGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNT 87
+GDTLF+AG GKFFEG +M+ +L V L LP T+V+CGHEYTV NL F+ VEP+N
Sbjct: 133 TGDTLFIAGCGKFFEGTAEQMYQSLCVTLGSLPKPTQVYCGHEYTVKNLKFALTVEPDNE 192
Query: 88 RIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVM 121
++ +KL+WA ++R+ PTVPSTI + M
Sbjct: 193 KLKQKLEWAEKQRQAGLPTVPSTIEEELETNPFM 226
>gnl|CDD|234201 TIGR03413, GSH_gloB, hydroxyacylglutathione hydrolase. Members of
this protein family are hydroxyacylglutathione
hydrolase, a detoxification enzyme known as glyoxalase
II. It follows lactoylglutathione lyase, or glyoxalase
I, and acts to remove the toxic metabolite methylglyoxal
and related compounds. This protein belongs to the
broader metallo-beta-lactamase family (pfam00753)
[Cellular processes, Detoxification].
Length = 248
Score = 125 bits (316), Expect = 1e-36
Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 1/85 (1%)
Query: 28 SGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNT 87
GDTLF AG G+ FEG +M+ +L +LA LP++T V+C HEYT++NL F+ VEP+N
Sbjct: 124 CGDTLFSAGCGRLFEGTPEQMYDSLQ-RLAALPDDTLVYCAHEYTLSNLRFALTVEPDNP 182
Query: 88 RIAEKLKWAIEKRERKEPTVPSTIG 112
+ E+LK R + +PT+PST+G
Sbjct: 183 ALQERLKEVEALRAQGQPTLPSTLG 207
>gnl|CDD|215223 PLN02398, PLN02398, hydroxyacylglutathione hydrolase.
Length = 329
Score = 89.9 bits (223), Expect = 2e-22
Identities = 39/99 (39%), Positives = 56/99 (56%), Gaps = 5/99 (5%)
Query: 15 FFEGDGAFVTSPLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVN 74
+F G GA T GDTLF GK FEG +M +L K+ LP++T ++CGHEYT++
Sbjct: 195 YFPGSGAIFT----GDTLFSLSCGKLFEGTPEQMLSSLQ-KIISLPDDTNIYCGHEYTLS 249
Query: 75 NLYFSKHVEPNNTRIAEKLKWAIEKRERKEPTVPSTIGM 113
N F+ +EPNN + R + PT+P+T+ M
Sbjct: 250 NSKFALSIEPNNEVLQSYAAHVAHLRSKGLPTIPTTVKM 288
>gnl|CDD|182327 PRK10241, PRK10241, hydroxyacylglutathione hydrolase; Provisional.
Length = 251
Score = 69.9 bits (171), Expect = 2e-15
Identities = 29/83 (34%), Positives = 51/83 (61%), Gaps = 1/83 (1%)
Query: 29 GDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNTR 88
GDTLF G G+ FEG ++M+ +L K+ LP++T + C HEYT++N+ F+ + P++
Sbjct: 126 GDTLFSGGCGRLFEGTASQMYQSLK-KINALPDDTLICCAHEYTLSNMKFALSILPHDLS 184
Query: 89 IAEKLKWAIEKRERKEPTVPSTI 111
I + + E R + + T+P +
Sbjct: 185 INDYYRKVKELRAKNQITLPVIL 207
>gnl|CDD|178547 PLN02962, PLN02962, hydroxyacylglutathione hydrolase.
Length = 251
Score = 32.8 bits (75), Expect = 0.033
Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 5/67 (7%)
Query: 10 AGAGKFFEGDGAFVTSP---LSGDTLFVAGAGK--FFEGDGAEMHHNLNVKLAKLPNETK 64
AG + G+G P +GD L + G G+ F G +++ +++ ++ LP +T
Sbjct: 127 AGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDFQGGSSDQLYKSVHSQIFTLPKDTL 186
Query: 65 VFCGHEY 71
++ H+Y
Sbjct: 187 IYPAHDY 193
>gnl|CDD|223565 COG0491, GloB, Zn-dependent hydrolases, including glyoxylases
[General function prediction only].
Length = 252
Score = 30.1 bits (67), Expect = 0.30
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 4/47 (8%)
Query: 27 LSGDTLFVAGAGK----FFEGDGAEMHHNLNVKLAKLPNETKVFCGH 69
+GDTLF G GD A++ +L L L +T V GH
Sbjct: 164 FTGDTLFAGDTGVGRLDLPGGDAAQLLASLRRLLLLLLPDTLVLPGH 210
>gnl|CDD|236717 PRK10572, PRK10572, DNA-binding transcriptional regulator AraC;
Provisional.
Length = 290
Score = 28.8 bits (65), Expect = 0.92
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 7 LFVAGAGKFFEGDGAFVTSPLSGDTL-FVAGA 37
L + G G F G AFV P GD L F G
Sbjct: 54 LTIRGQGVIFNGGRAFVCRP--GDLLLFPPGE 83
>gnl|CDD|237108 PRK12467, PRK12467, peptide synthase; Provisional.
Length = 3956
Score = 29.0 bits (65), Expect = 0.93
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 17 EGDGAFV--TSPLSGDTLFVAGAGKFFEGDGAEMHH-NLNVKLAKLPNET 63
EGDG P++GD + FF D E HH N +V L P E
Sbjct: 2165 EGDGTVSIDQGPVTGDLPLLPIQQMFFADDIPERHHWNQSVLLE--PREA 2212
>gnl|CDD|192540 pfam10338, DUF2423, Protein of unknown function (DUF2423). This
is a family of proteins conserved in fungi. The
function is not known.
Length = 45
Score = 26.5 bits (59), Expect = 1.00
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 78 FSKHVEPNNTRIAEKLK 94
F + R++ KLK
Sbjct: 22 FGPIEDARAERLSAKLK 38
>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase. Function:
phosphorylation of DTMP to form DTDP in both de novo and
salvage pathways of DTTP synthesis. Catalytic activity:
ATP + thymidine 5'-phosphate = ADP + thymidine
5'-diphosphate [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 195
Score = 28.5 bits (64), Expect = 1.00
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 16/79 (20%)
Query: 37 AGKF--FEG-DGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNTRIAEKL 93
G F EG DGA N+ L ++ F++ EP T I EK+
Sbjct: 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGY----------DVLFTR--EPGGTPIGEKI 49
Query: 94 KWAIEKRERKEPTVPSTIG 112
+ + E EP
Sbjct: 50 R-ELLLNENDEPLTDKAEA 67
>gnl|CDD|181543 PRK08734, PRK08734, lipid A biosynthesis lauroyl acyltransferase;
Provisional.
Length = 305
Score = 28.3 bits (63), Expect = 1.2
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 14/89 (15%)
Query: 26 PLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPN 85
P GD +F FF M L +LA+ T ++ E +L F+ HV+P
Sbjct: 194 PKMGDGVFAP----FFGIPALTM--TLVNRLAERTGATVLYGWCERIGPDLEFALHVQPA 247
Query: 86 N--------TRIAEKLKWAIEKRERKEPT 106
+ R A L IE+ R++P
Sbjct: 248 DPAVADPDPLRAATALNAGIERIARRDPA 276
>gnl|CDD|214854 smart00849, Lactamase_B, Metallo-beta-lactamase superfamily. Apart
from the beta-lactamases a number of other proteins
contain this domain. These proteins include
thiolesterases, members of the glyoxalase II family,
that catalyse the hydrolysis of S-D-lactoyl-glutathione
to form glutathione and D-lactic acid and a competence
protein that is essential for natural transformation in
Neisseria gonorrhoeae and could be a transporter
involved in DNA uptake. Except for the competence
protein these proteins bind two zinc ions per molecule
as cofactor.
Length = 177
Score = 27.1 bits (60), Expect = 2.3
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 2/45 (4%)
Query: 27 LSGDTLFVAGAG-KFFEGDGAEMHHNLN-VKLAKLPNETKVFCGH 69
+GD LF G G +G A L + V GH
Sbjct: 133 FTGDLLFAGGDGRTLVDGGDAAASDALESLLKLLKLLPKLVVPGH 177
>gnl|CDD|183293 PRK11730, fadB, multifunctional fatty acid oxidation complex
subunit alpha; Reviewed.
Length = 715
Score = 27.5 bits (62), Expect = 2.4
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 89 IAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMGMVM 125
IA KL W ++ + EP S I +M T GMV
Sbjct: 205 IAGKLDWKARRQPKLEPLKLSKIEAMMSFTTAKGMVA 241
>gnl|CDD|205435 pfam13255, DUF4046, Protein of unknown function (DUF4046). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 64 and 331 amino acids
in length.
Length = 302
Score = 27.4 bits (61), Expect = 2.5
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 10/40 (25%)
Query: 73 VNNLYFSKHVE------PNNTRIAEK----LKWAIEKRER 102
+N+LY ++ E PNN EK LKW IE++E+
Sbjct: 154 INDLYPNRFKEWEFKMTPNNFWTKEKALEALKWTIEEKEK 193
>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional.
Length = 5163
Score = 27.6 bits (61), Expect = 2.6
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 7/58 (12%)
Query: 6 TLF----VAGAGKFFEGDGAFVT--SPLSGDTLFVAGAGKFFEGDGAEMHH-NLNVKL 56
LF + G + G P+SG+TL + +FFE E HH N ++ L
Sbjct: 3608 DLFQHQTIQGLARVARVGGGVAVDQGPVSGETLLLPIQQQFFEEPVPERHHWNQSLLL 3665
>gnl|CDD|222707 pfam14357, DUF4404, Domain of unknown function (DUF4404). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 90 amino acids in length.
There are two completely conserved residues (P and G)
that may be functionally important.
Length = 85
Score = 26.1 bits (58), Expect = 3.1
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 83 EPNNTRIAEKLKWAIEKRERKEPTVPSTIGMVMVMGTVMG 122
E + +A++L A+E+ E P + T+ ++ MG
Sbjct: 45 EAEDESLADRLNLAVERFEADHPKLAGTLRNILDSLANMG 84
>gnl|CDD|187839 cd09708, Csf4_U, CRISPR/Cas system-associated DinG family helicase
Csf4. CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
DinG family DNA helicase.
Length = 632
Score = 27.2 bits (60), Expect = 3.1
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 96 AIEKRERKEPTVPSTIGMVMVM 117
++ KR RK P I ++M
Sbjct: 585 SMLKRIRKTSVRPEIINESLMM 606
>gnl|CDD|226321 COG3799, Mal, Methylaspartate ammonia-lyase [Amino acid transport
and metabolism].
Length = 410
Score = 26.8 bits (59), Expect = 4.3
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 1 MALGDTLFVAGAGKFFEGDGAFVTSPLSGDTLFVAGA 37
M + D L G G FF D A + + D F G
Sbjct: 1 MQIKDVLLTPGYGAFFFDDQAAIRAGAGQDGFFYVGE 37
>gnl|CDD|192008 pfam08343, RNR_N, Ribonucleotide reductase N-terminal. This
domain is found at the N-terminus of bacterial
ribonucleoside-diphosphate reductases (ribonucleotide
reductases, RNRs) which catalyze the formation of
deoxyribonucleotides. It occurs together with the RNR
all-alpha domain (pfam00317) and the RNR barrel domain
(pfam02867).
Length = 82
Score = 25.5 bits (57), Expect = 4.4
Identities = 10/26 (38%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Query: 77 YFSKHVEPNNTR----IAEKLKWAIE 98
YF +HV P NT + E+L + +E
Sbjct: 29 YFKEHVNP-NTVFFHSLEERLDYLVE 53
>gnl|CDD|237026 PRK11930, PRK11930, putative bifunctional
UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
ligase/alanine racemase; Provisional.
Length = 822
Score = 26.5 bits (59), Expect = 5.4
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 21/83 (25%)
Query: 6 TLFVAGAGKFFEGDGAFVTSP----LSGDTLFVAGAGKF-FEG----------------D 44
+ F +FF+ AF+ S + + V GA KF FE +
Sbjct: 406 SKFEGTEKEFFKTTEAFLKSFAFLKFRNELILVKGARKFEFEQITELLEQKVHETVLEIN 465
Query: 45 GAEMHHNLNVKLAKLPNETKVFC 67
+ HNLN +KL ETK+ C
Sbjct: 466 LNAIVHNLNYYRSKLKPETKIMC 488
>gnl|CDD|217518 pfam03370, CBM_21, Putative phosphatase regulatory subunit. This
family consists of several eukaryotic proteins that are
thought to be involved in the regulation of glycogen
metabolism. For instance, the mouse PTG protein has
been shown to interact with glycogen synthase,
phosphorylase kinase, phosphorylase a: these three
enzymes have key roles in the regulation of glycogen
metabolism. PTG also binds the catalytic subunit of
protein phosphatase 1 (PP1C) and localises it to
glycogen. Subsets of similar interactions have been
observed with several other members of this family,
such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins.
While the precise function of these proteins is not
known, they may serve a scaffold function, bringing
together the key enzymes in glycogen metabolism. This
family is a carbohydrate binding domain.
Length = 108
Score = 25.3 bits (56), Expect = 7.2
Identities = 10/33 (30%), Positives = 12/33 (36%), Gaps = 3/33 (9%)
Query: 53 NVKL--AKLPNETKVFCGHEYTVNNLYFSKHVE 83
V L L ++ G V NL F K V
Sbjct: 6 KVCLESLFLSDDGSTLSGTVR-VKNLAFEKSVT 37
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,152,833
Number of extensions: 632108
Number of successful extensions: 707
Number of sequences better than 10.0: 1
Number of HSP's gapped: 703
Number of HSP's successfully gapped: 37
Length of query: 140
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 53
Effective length of database: 7,078,804
Effective search space: 375176612
Effective search space used: 375176612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.8 bits)