RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17909
(140 letters)
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Salmonella typhimurium [TaxId: 90371]}
Length = 251
Score = 72.6 bits (177), Expect = 4e-17
Identities = 31/87 (35%), Positives = 52/87 (59%), Gaps = 1/87 (1%)
Query: 26 PLSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPN 85
GDTLF G G+ FEG ++M+ +L K+ LP++T + C HEYT+ N+ F+ + P+
Sbjct: 123 LFCGDTLFSGGCGRLFEGTPSQMYQSLM-KINSLPDDTLICCAHEYTLANIKFALSILPH 181
Query: 86 NTRIAEKLKWAIEKRERKEPTVPSTIG 112
++ I E + E R +K+ T+P +
Sbjct: 182 DSFINEYYRKVKELRVKKQMTLPVILK 208
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 254
Score = 72.2 bits (176), Expect = 8e-17
Identities = 35/86 (40%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Query: 28 SGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNT 87
+GDT+F GK FEG +M +L K+ LP++T ++CGHEYT++N F+ +EPNN
Sbjct: 129 TGDTMFSLSCGKLFEGTPKQMLASLQ-KITSLPDDTSIYCGHEYTLSNSKFALSLEPNNE 187
Query: 88 RIAEKLKWAIEKRERKEPTVPSTIGM 113
+ E R +K PT+P+T+ M
Sbjct: 188 VLQSYAAHVAELRSKKLPTIPTTVKM 213
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 260
Score = 68.8 bits (167), Expect = 1e-15
Identities = 51/86 (59%), Positives = 61/86 (70%)
Query: 27 LSGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNN 86
+GDTLFVAG GKF+EG EM L L +LP +T+V+CGHEYT+NNL F++HVEP N
Sbjct: 131 FTGDTLFVAGCGKFYEGTADEMCKALLEVLGRLPPDTRVYCGHEYTINNLKFARHVEPGN 190
Query: 87 TRIAEKLKWAIEKRERKEPTVPSTIG 112
I EKL WA EK EPTVPST+
Sbjct: 191 AAIREKLAWAKEKYSIGEPTVPSTLA 216
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
aeruginosa, IMP-1 [TaxId: 287]}
Length = 220
Score = 46.1 bits (108), Expect = 2e-07
Identities = 9/67 (13%), Positives = 18/67 (26%)
Query: 28 SGDTLFVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVEPNNT 87
G + G G + + + + +K V H + +E
Sbjct: 154 GGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASLLKLTLEQAVK 213
Query: 88 RIAEKLK 94
+ E K
Sbjct: 214 GLNESKK 220
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas
maltophilia [TaxId: 40324]}
Length = 266
Score = 42.3 bits (98), Expect = 4e-06
Identities = 7/92 (7%), Positives = 20/92 (21%), Gaps = 5/92 (5%)
Query: 15 FFEGDGAFVTSPLSGDTLFVAGAG----KFFEGDGAEMHHNLNVKLAKLPNETKVFCGHE 70
+ + D+L G + + + + LP + +
Sbjct: 168 WTDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFA-TVRALPCDVLLTPHPG 226
Query: 71 YTVNNLYFSKHVEPNNTRIAEKLKWAIEKRER 102
+ + A +K +
Sbjct: 227 ASNWDYAAGARAGAKALTCKAYADAAEQKFDG 258
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 298
Score = 41.9 bits (97), Expect = 6e-06
Identities = 13/85 (15%), Positives = 25/85 (29%), Gaps = 6/85 (7%)
Query: 27 LSGDTLFVAGAGK-----FFEGDGAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKH 81
GD L + D +L +L +LP ++ GH + +
Sbjct: 175 FCGDALGEFDEAEGVWRPLVFDDMEAYLESLE-RLQRLPTLLQLIPGHGGLLRGRLAADG 233
Query: 82 VEPNNTRIAEKLKWAIEKRERKEPT 106
E T + + ++ E
Sbjct: 234 AESAYTECLRLCRRLLWRQSMGESL 258
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 37.7 bits (86), Expect = 2e-04
Identities = 10/100 (10%), Positives = 25/100 (25%), Gaps = 8/100 (8%)
Query: 7 LFVAGAGKFFEGDGAFVTSPLSGDTLFVAGAGKF-FEGDGAEMHHNLNVKLAKLPNETKV 65
+ + + F SG G+ + G + K + + +
Sbjct: 156 WEMTVKDGKEDREVLFF---CSGTVALNRLVGQPTYAGIVDDYRATFA-KAKAMKIDVLL 211
Query: 66 FCGHEYTVNNLYFSKHVEPNNT---RIAEKLKWAIEKRER 102
E ++ + + E + +A E
Sbjct: 212 GPHPEVYGMQAKRAEMKDGAPNPFIKPGELVTYATSLSED 251
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena
variabilis [TaxId: 1172]}
Length = 200
Score = 31.8 bits (71), Expect = 0.017
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 5/52 (9%)
Query: 27 LSGDTLFVAGAGKFFEGDGAEMHHNLNV-----KLAKLPNETKVFCGHEYTV 73
++GD + AG ++ + V +LA L V G ++V
Sbjct: 133 ITGDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLAALEKVEAVLVGDGWSV 184
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
aeruginosa, VIM-2 [TaxId: 287]}
Length = 230
Score = 31.2 bits (69), Expect = 0.032
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 33 FVAGAGKFFEGDGAEMHHNLNVKLAKLPNETKVFCGH 69
AG + D AE ++ P V GH
Sbjct: 173 SRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGH 209
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain
(RecB), N-terminal domain {Escherichia coli [TaxId:
562]}
Length = 485
Score = 26.2 bits (56), Expect = 1.7
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 23 VTSPLSGDTLFVAGAG 38
+ PL G+ L A AG
Sbjct: 11 LRLPLQGERLIEASAG 26
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 363
Score = 24.8 bits (54), Expect = 5.2
Identities = 19/78 (24%), Positives = 31/78 (39%), Gaps = 18/78 (23%)
Query: 45 GAEMHHNLNVKLAKLPNETKVFCGHEYTVNNLYFSKHVE-----PN---NTRIAEKLKWA 96
G + H L++ K+F VN +F K E P N+R+ L+W
Sbjct: 232 GKYLAHWLSMAQHPAAKLPKIFH-----VN--WFRKDKEGKFLWPGFGENSRV---LEWM 281
Query: 97 IEKRERKEPTVPSTIGMV 114
+ + K T + IG +
Sbjct: 282 FNRIDGKASTKLTPIGYI 299
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 24.5 bits (51), Expect = 6.5
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 60 PNETKVFCGHEYTVNNLYFS 79
+T+++ H + S
Sbjct: 48 LTDTEIYTEHSHQTTVAKTS 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.400
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 507,250
Number of extensions: 21623
Number of successful extensions: 82
Number of sequences better than 10.0: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 13
Length of query: 140
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 63
Effective length of database: 1,350,386
Effective search space: 85074318
Effective search space used: 85074318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.9 bits)