Query psy17912
Match_columns 779
No_of_seqs 554 out of 3478
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 17:18:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00110 helicase; Provisional 100.0 1.7E-68 3.7E-73 615.9 50.6 412 59-492 72-485 (545)
2 KOG0331|consensus 100.0 5.2E-70 1.1E-74 598.4 36.1 415 71-494 16-451 (519)
3 KOG0336|consensus 100.0 5.5E-65 1.2E-69 525.0 32.9 411 72-499 168-580 (629)
4 KOG0333|consensus 100.0 1.3E-62 2.9E-67 522.3 32.6 385 89-498 218-631 (673)
5 KOG0330|consensus 100.0 5.7E-62 1.2E-66 502.2 30.2 348 125-490 58-406 (476)
6 KOG0339|consensus 100.0 2.6E-61 5.6E-66 509.4 33.0 409 62-494 169-578 (731)
7 PLN00206 DEAD-box ATP-dependen 100.0 1.7E-59 3.6E-64 539.7 46.6 403 72-498 76-482 (518)
8 KOG0341|consensus 100.0 4.7E-61 1E-65 492.8 17.7 389 77-491 131-531 (610)
9 COG0513 SrmB Superfamily II DN 100.0 2.7E-58 5.8E-63 526.4 40.6 347 128-489 29-378 (513)
10 KOG0334|consensus 100.0 2.4E-58 5.1E-63 528.5 30.9 407 60-490 308-719 (997)
11 KOG0328|consensus 100.0 1.8E-57 3.8E-62 450.3 29.0 359 123-499 22-381 (400)
12 PRK04837 ATP-dependent RNA hel 100.0 1.2E-55 2.7E-60 497.8 41.3 360 126-498 6-369 (423)
13 KOG0335|consensus 100.0 1.4E-56 2.9E-61 484.3 31.2 360 118-487 64-440 (482)
14 KOG0338|consensus 100.0 7.1E-57 1.5E-61 476.7 26.5 358 128-500 181-542 (691)
15 PRK10590 ATP-dependent RNA hel 100.0 4.9E-55 1.1E-59 496.5 42.3 356 129-497 2-358 (456)
16 PRK11776 ATP-dependent RNA hel 100.0 1.5E-54 3.3E-59 494.1 41.8 347 128-493 4-351 (460)
17 PRK04537 ATP-dependent RNA hel 100.0 4.3E-54 9.3E-59 497.9 42.6 351 128-491 9-364 (572)
18 PRK11634 ATP-dependent RNA hel 100.0 6.7E-54 1.5E-58 499.0 42.7 353 128-498 6-359 (629)
19 KOG0340|consensus 100.0 7.6E-55 1.7E-59 444.6 28.5 350 127-490 6-360 (442)
20 KOG0326|consensus 100.0 1.3E-55 2.7E-60 443.6 18.8 346 128-492 85-430 (459)
21 PRK11192 ATP-dependent RNA hel 100.0 7.1E-53 1.5E-57 477.2 43.2 356 129-498 2-359 (434)
22 KOG0342|consensus 100.0 1.6E-53 3.5E-58 452.0 31.3 360 126-497 80-443 (543)
23 KOG0345|consensus 100.0 5.2E-53 1.1E-57 444.9 33.1 343 129-483 5-356 (567)
24 PRK01297 ATP-dependent RNA hel 100.0 4.8E-51 1E-55 466.7 49.7 352 127-491 86-442 (475)
25 KOG0343|consensus 100.0 4.1E-52 8.8E-57 444.0 30.3 344 126-483 67-414 (758)
26 PTZ00424 helicase 45; Provisio 100.0 1.2E-50 2.6E-55 454.9 40.2 356 126-499 26-382 (401)
27 KOG0348|consensus 100.0 6E-51 1.3E-55 434.0 33.0 365 126-499 134-565 (708)
28 KOG0346|consensus 100.0 9.1E-51 2E-55 424.2 27.7 348 128-486 19-405 (569)
29 KOG0332|consensus 100.0 3.5E-49 7.5E-54 405.2 28.9 346 123-489 85-441 (477)
30 KOG0347|consensus 100.0 4.7E-49 1E-53 420.7 17.3 357 122-492 175-571 (731)
31 TIGR03817 DECH_helic helicase/ 100.0 1.2E-46 2.6E-51 446.3 37.6 332 134-488 20-383 (742)
32 KOG0327|consensus 100.0 2.8E-47 6E-52 395.4 26.3 354 126-499 24-378 (397)
33 PLN03137 ATP-dependent DNA hel 100.0 1.7E-45 3.7E-50 433.0 40.7 327 133-490 442-786 (1195)
34 TIGR00614 recQ_fam ATP-depende 100.0 2.6E-45 5.5E-50 418.2 35.7 323 145-498 6-340 (470)
35 KOG4284|consensus 100.0 4E-46 8.6E-51 403.3 23.3 355 119-492 16-380 (980)
36 KOG0337|consensus 100.0 1.3E-46 2.8E-51 391.6 17.5 472 127-618 20-501 (529)
37 KOG0344|consensus 100.0 1.5E-45 3.2E-50 400.3 24.6 356 120-488 124-492 (593)
38 PRK11057 ATP-dependent DNA hel 100.0 5.4E-44 1.2E-48 417.8 38.2 328 137-497 11-349 (607)
39 PRK02362 ski2-like helicase; P 100.0 2.9E-43 6.3E-48 421.5 36.2 371 129-526 2-434 (737)
40 KOG0350|consensus 100.0 9.4E-44 2E-48 377.0 25.6 349 127-491 126-540 (620)
41 TIGR01389 recQ ATP-dependent D 100.0 1.2E-42 2.6E-47 407.3 36.4 320 142-494 4-334 (591)
42 PRK13767 ATP-dependent helicas 100.0 5E-42 1.1E-46 414.7 40.5 357 135-506 18-418 (876)
43 PRK00254 ski2-like helicase; P 100.0 3.4E-42 7.3E-47 411.3 36.2 373 129-525 2-423 (720)
44 COG0514 RecQ Superfamily II DN 100.0 4.8E-42 1E-46 384.4 30.2 323 141-493 7-339 (590)
45 PRK01172 ski2-like helicase; P 100.0 1.4E-40 3.1E-45 395.5 35.5 368 129-523 2-411 (674)
46 TIGR02621 cas3_GSU0051 CRISPR- 100.0 9.4E-40 2E-44 380.3 34.6 307 146-481 12-380 (844)
47 COG1201 Lhr Lhr-like helicases 100.0 2.6E-39 5.5E-44 374.6 36.4 363 134-512 7-388 (814)
48 TIGR00580 mfd transcription-re 100.0 2.3E-38 4.9E-43 379.0 39.7 317 136-488 437-767 (926)
49 PRK10689 transcription-repair 100.0 5.3E-38 1.2E-42 383.3 38.3 315 138-488 589-916 (1147)
50 KOG0329|consensus 100.0 2.3E-39 5E-44 317.2 15.0 315 126-492 40-356 (387)
51 PRK10917 ATP-dependent DNA hel 100.0 6.9E-37 1.5E-41 361.7 38.8 317 137-488 248-586 (681)
52 PRK09751 putative ATP-dependen 100.0 6.3E-37 1.4E-41 375.2 37.9 369 170-554 1-462 (1490)
53 TIGR00643 recG ATP-dependent D 100.0 3.1E-36 6.8E-41 353.9 37.8 316 138-488 224-563 (630)
54 KOG0352|consensus 100.0 1E-37 2.2E-42 324.7 21.8 334 138-498 6-369 (641)
55 TIGR01970 DEAH_box_HrpB ATP-de 100.0 4.8E-36 1E-40 355.7 35.2 315 156-502 8-347 (819)
56 PHA02653 RNA helicase NPH-II; 100.0 9.5E-36 2.1E-40 345.4 32.7 310 153-491 167-514 (675)
57 PRK09401 reverse gyrase; Revie 100.0 6.2E-36 1.3E-40 366.0 32.6 296 146-476 77-429 (1176)
58 PRK11664 ATP-dependent RNA hel 100.0 2E-35 4.2E-40 351.3 32.6 314 157-502 12-350 (812)
59 PRK14701 reverse gyrase; Provi 100.0 2.3E-35 4.9E-40 367.8 32.9 314 137-483 66-448 (1638)
60 KOG0351|consensus 100.0 1.3E-35 2.8E-40 350.6 28.2 321 139-487 252-588 (941)
61 COG1111 MPH1 ERCC4-like helica 100.0 2.6E-34 5.6E-39 308.4 33.2 315 147-479 12-470 (542)
62 COG1204 Superfamily II helicas 100.0 5.6E-35 1.2E-39 343.3 29.4 355 133-509 14-428 (766)
63 COG1202 Superfamily II helicas 100.0 1.5E-34 3.1E-39 311.0 27.5 367 129-515 195-587 (830)
64 TIGR01587 cas3_core CRISPR-ass 100.0 1.8E-34 3.8E-39 319.0 27.1 288 167-480 1-321 (358)
65 PHA02558 uvsW UvsW helicase; P 100.0 7.2E-34 1.6E-38 325.9 30.2 300 148-479 112-440 (501)
66 PRK12898 secA preprotein trans 100.0 5.1E-33 1.1E-37 317.8 32.0 330 149-499 102-593 (656)
67 TIGR01054 rgy reverse gyrase. 100.0 7.6E-33 1.7E-37 339.4 33.6 292 139-464 67-410 (1171)
68 KOG0353|consensus 100.0 1.4E-33 3E-38 289.6 21.1 314 130-470 73-403 (695)
69 PRK13766 Hef nuclease; Provisi 100.0 8.8E-32 1.9E-36 325.9 36.7 316 147-480 12-469 (773)
70 TIGR03158 cas3_cyano CRISPR-as 100.0 4.2E-32 9.2E-37 298.3 30.5 293 154-476 1-357 (357)
71 COG1205 Distinct helicase fami 100.0 3.4E-32 7.3E-37 324.1 31.1 328 135-482 55-413 (851)
72 KOG0349|consensus 100.0 1.1E-33 2.5E-38 294.5 15.4 275 202-486 287-610 (725)
73 KOG0354|consensus 100.0 4.2E-32 9.2E-37 307.4 29.2 335 135-488 47-527 (746)
74 PRK09200 preprotein translocas 100.0 7.1E-32 1.5E-36 314.6 30.8 320 146-487 75-537 (790)
75 PRK11131 ATP-dependent RNA hel 100.0 8.1E-32 1.7E-36 325.1 31.4 309 156-501 80-421 (1294)
76 TIGR03714 secA2 accessory Sec 100.0 1.3E-31 2.9E-36 309.4 31.7 319 151-487 69-533 (762)
77 TIGR00963 secA preprotein tran 100.0 4.2E-31 9.2E-36 303.3 31.2 318 149-486 55-512 (745)
78 KOG0952|consensus 100.0 4.5E-31 9.8E-36 301.1 25.6 333 146-496 106-496 (1230)
79 TIGR01967 DEAH_box_HrpA ATP-de 100.0 6.1E-30 1.3E-34 310.0 29.8 314 157-502 74-415 (1283)
80 TIGR00603 rad25 DNA repair hel 100.0 2E-28 4.4E-33 283.2 27.1 295 149-480 254-589 (732)
81 cd00268 DEADc DEAD-box helicas 100.0 3.3E-28 7.2E-33 247.0 24.8 202 130-334 1-202 (203)
82 COG1200 RecG RecG-like helicas 100.0 2.1E-27 4.5E-32 265.7 30.6 318 137-488 249-588 (677)
83 KOG0947|consensus 100.0 8.2E-28 1.8E-32 271.4 24.5 338 149-515 296-749 (1248)
84 KOG0948|consensus 100.0 2.8E-28 6E-33 269.1 19.9 358 149-537 128-585 (1041)
85 PRK05580 primosome assembly pr 100.0 5.7E-27 1.2E-31 276.5 32.3 310 149-486 143-544 (679)
86 PRK09694 helicase Cas3; Provis 100.0 1.6E-26 3.4E-31 274.6 32.1 313 147-480 283-664 (878)
87 COG4581 Superfamily II RNA hel 100.0 7.6E-27 1.6E-31 274.4 27.6 350 150-523 119-571 (1041)
88 COG1197 Mfd Transcription-repa 100.0 9.5E-26 2.1E-30 265.2 35.5 320 136-490 580-912 (1139)
89 PRK13104 secA preprotein trans 99.9 4.8E-26 1E-30 265.0 29.3 314 149-482 81-578 (896)
90 KOG0951|consensus 99.9 4E-26 8.6E-31 263.4 26.5 326 134-479 295-688 (1674)
91 PRK04914 ATP-dependent helicas 99.9 3.1E-25 6.8E-30 265.1 34.4 311 150-482 152-594 (956)
92 COG1061 SSL2 DNA or RNA helica 99.9 3.8E-26 8.2E-31 257.4 25.1 294 148-477 34-375 (442)
93 PRK12904 preprotein translocas 99.9 1.9E-25 4E-30 260.1 28.9 314 149-482 80-564 (830)
94 TIGR00595 priA primosomal prot 99.9 1.9E-25 4E-30 254.8 27.4 289 169-485 1-375 (505)
95 PRK12899 secA preprotein trans 99.9 9.3E-25 2E-29 253.7 28.5 149 131-289 65-229 (970)
96 COG1643 HrpA HrpA-like helicas 99.9 5.2E-25 1.1E-29 257.9 25.0 315 156-501 56-397 (845)
97 PRK12906 secA preprotein trans 99.9 1.3E-24 2.8E-29 252.1 25.9 316 149-486 79-548 (796)
98 PRK11448 hsdR type I restricti 99.9 1.2E-23 2.6E-28 256.9 28.3 310 149-479 412-801 (1123)
99 KOG0950|consensus 99.9 3.4E-24 7.4E-29 244.6 21.6 320 134-479 206-597 (1008)
100 PF00270 DEAD: DEAD/DEAH box h 99.9 6.4E-24 1.4E-28 208.6 19.7 165 152-322 1-168 (169)
101 COG4098 comFA Superfamily II D 99.9 1.2E-22 2.5E-27 208.4 29.2 291 150-479 97-402 (441)
102 PRK13107 preprotein translocas 99.9 1.7E-23 3.8E-28 243.0 25.3 313 150-482 82-582 (908)
103 KOG0922|consensus 99.9 1.4E-23 3.1E-28 232.7 23.4 320 156-498 57-397 (674)
104 PLN03142 Probable chromatin-re 99.9 1.6E-22 3.4E-27 242.8 29.3 378 150-550 169-666 (1033)
105 KOG0920|consensus 99.9 3.4E-22 7.3E-27 233.2 26.2 335 152-503 175-557 (924)
106 KOG0923|consensus 99.9 1.5E-22 3.1E-27 221.9 20.3 305 151-484 266-600 (902)
107 COG1203 CRISPR-associated heli 99.9 9.6E-22 2.1E-26 234.3 23.9 319 151-487 196-546 (733)
108 KOG0924|consensus 99.9 2.5E-21 5.5E-26 212.3 17.9 306 152-490 358-696 (1042)
109 KOG0385|consensus 99.9 5.9E-21 1.3E-25 212.6 21.0 383 150-555 167-672 (971)
110 PRK12900 secA preprotein trans 99.8 3.2E-19 7E-24 208.3 24.5 125 356-487 580-707 (1025)
111 KOG0926|consensus 99.8 1.1E-19 2.5E-24 202.5 18.6 299 155-480 261-694 (1172)
112 KOG0331|consensus 99.8 4.9E-20 1.1E-24 204.0 13.4 220 375-614 165-398 (519)
113 COG1110 Reverse gyrase [DNA re 99.8 2.5E-18 5.4E-23 197.7 27.3 288 141-463 73-417 (1187)
114 smart00487 DEXDc DEAD-like hel 99.8 5.6E-18 1.2E-22 169.3 22.3 187 146-338 4-192 (201)
115 TIGR01407 dinG_rel DnaQ family 99.8 3E-17 6.4E-22 199.8 32.5 299 135-445 231-745 (850)
116 KOG0949|consensus 99.8 1.3E-18 2.8E-23 197.9 18.6 159 150-318 511-673 (1330)
117 TIGR00631 uvrb excinuclease AB 99.8 4.2E-17 9.1E-22 190.8 30.2 117 359-486 427-548 (655)
118 PRK12326 preprotein translocas 99.8 5.3E-17 1.1E-21 185.2 29.7 313 149-482 77-538 (764)
119 TIGR00348 hsdR type I site-spe 99.8 3.1E-17 6.8E-22 193.9 26.9 300 151-478 239-634 (667)
120 COG1198 PriA Primosomal protei 99.8 3.9E-17 8.3E-22 189.5 26.2 305 150-482 198-594 (730)
121 KOG0925|consensus 99.8 4.3E-17 9.3E-22 173.8 20.9 319 127-479 24-376 (699)
122 COG4096 HsdR Type I site-speci 99.8 6.1E-17 1.3E-21 184.2 23.5 298 149-478 164-525 (875)
123 PRK13103 secA preprotein trans 99.7 1.4E-16 3E-21 186.0 24.5 313 149-482 81-582 (913)
124 KOG0384|consensus 99.7 8.3E-17 1.8E-21 187.8 18.5 377 149-552 369-887 (1373)
125 PRK05298 excinuclease ABC subu 99.7 4.7E-15 1E-19 174.8 32.3 117 359-486 431-552 (652)
126 KOG4150|consensus 99.7 1.5E-16 3.2E-21 171.8 17.4 319 145-482 281-631 (1034)
127 COG0556 UvrB Helicase subunit 99.7 2.4E-15 5.3E-20 162.9 26.2 154 306-479 386-546 (663)
128 PRK12903 secA preprotein trans 99.7 1.4E-15 3.1E-20 175.7 24.3 313 149-482 77-530 (925)
129 KOG0387|consensus 99.7 1.7E-15 3.6E-20 170.5 20.5 307 150-479 205-644 (923)
130 PRK07246 bifunctional ATP-depe 99.7 2.6E-14 5.7E-19 172.0 28.7 276 150-443 245-712 (820)
131 KOG1123|consensus 99.7 1.1E-15 2.4E-20 163.5 14.5 295 149-479 301-635 (776)
132 COG4889 Predicted helicase [Ge 99.6 6.7E-16 1.5E-20 173.7 12.3 330 137-486 148-583 (1518)
133 CHL00122 secA preprotein trans 99.6 3.5E-14 7.6E-19 165.4 25.4 275 150-442 76-491 (870)
134 KOG0390|consensus 99.6 8.1E-14 1.8E-18 161.0 26.6 320 150-485 238-699 (776)
135 cd00046 DEXDc DEAD-like helica 99.6 1.2E-14 2.7E-19 136.5 16.6 144 166-316 1-144 (144)
136 cd00079 HELICc Helicase superf 99.6 9.5E-15 2.1E-19 136.7 15.0 118 358-485 12-129 (131)
137 KOG0392|consensus 99.6 2.5E-14 5.3E-19 166.7 19.9 359 151-526 976-1495(1549)
138 PRK12902 secA preprotein trans 99.6 3E-13 6.6E-18 157.3 28.5 127 150-288 85-218 (939)
139 KOG0389|consensus 99.6 4.2E-14 9.2E-19 159.1 20.4 307 151-479 400-874 (941)
140 PF00271 Helicase_C: Helicase 99.6 3.5E-15 7.7E-20 127.0 9.3 78 393-479 1-78 (78)
141 KOG0951|consensus 99.6 6.5E-14 1.4E-18 163.5 21.0 315 148-493 1141-1499(1674)
142 PRK08074 bifunctional ATP-depe 99.6 9.2E-13 2E-17 161.4 30.1 83 362-444 739-823 (928)
143 KOG0953|consensus 99.5 2E-13 4.4E-18 148.5 19.2 275 165-499 191-484 (700)
144 TIGR03117 cas_csf4 CRISPR-asso 99.5 3.7E-12 7.9E-17 147.3 29.9 96 365-462 460-560 (636)
145 PF04851 ResIII: Type III rest 99.5 8E-14 1.7E-18 138.3 14.3 152 150-317 3-183 (184)
146 PF06862 DUF1253: Protein of u 99.5 1.8E-11 3.8E-16 135.1 27.0 266 201-474 37-392 (442)
147 TIGR02562 cas3_yersinia CRISPR 99.4 5.5E-12 1.2E-16 149.0 21.8 311 151-480 409-881 (1110)
148 KOG1000|consensus 99.4 3.8E-11 8.2E-16 129.2 24.8 304 149-479 197-589 (689)
149 KOG2340|consensus 99.4 4.2E-12 9E-17 137.5 17.5 323 149-479 215-652 (698)
150 PRK12901 secA preprotein trans 99.4 8.7E-12 1.9E-16 146.6 20.7 121 357-482 611-732 (1112)
151 smart00490 HELICc helicase sup 99.4 9.8E-13 2.1E-17 112.2 9.4 81 390-479 2-82 (82)
152 KOG0386|consensus 99.4 1.9E-12 4.2E-17 149.2 13.2 309 149-479 393-824 (1157)
153 COG0513 SrmB Superfamily II DN 99.3 2.2E-11 4.8E-16 140.2 17.9 232 360-613 81-329 (513)
154 PRK11747 dinG ATP-dependent DN 99.3 4.3E-10 9.4E-15 134.0 28.8 77 362-443 522-603 (697)
155 COG1199 DinG Rad3-related DNA 99.3 4.8E-10 1E-14 134.0 27.8 71 145-222 10-84 (654)
156 TIGR00604 rad3 DNA repair heli 99.3 1.3E-09 2.7E-14 130.9 29.1 74 146-224 6-83 (705)
157 KOG0921|consensus 99.2 1.3E-10 2.9E-15 132.3 16.3 333 155-500 383-783 (1282)
158 PRK14873 primosome assembly pr 99.2 1.1E-09 2.4E-14 128.4 24.1 136 171-324 166-311 (665)
159 KOG4439|consensus 99.2 6.1E-10 1.3E-14 124.5 18.5 112 359-479 730-844 (901)
160 PTZ00110 helicase; Provisional 99.2 4.4E-10 9.6E-15 130.7 18.2 222 375-614 203-434 (545)
161 KOG0388|consensus 99.2 4.9E-10 1.1E-14 124.8 17.4 121 356-486 1026-1149(1185)
162 PF02399 Herpes_ori_bp: Origin 99.2 3.7E-09 8.1E-14 122.5 24.4 283 166-480 50-378 (824)
163 KOG0339|consensus 99.2 1.9E-10 4.2E-15 124.1 12.4 217 375-614 295-525 (731)
164 KOG0335|consensus 99.1 8.1E-10 1.8E-14 121.4 15.4 207 376-614 153-394 (482)
165 KOG0391|consensus 99.1 6.9E-09 1.5E-13 120.9 23.1 105 356-470 1258-1364(1958)
166 KOG1002|consensus 99.0 1.4E-08 2.9E-13 109.6 20.1 96 374-478 637-734 (791)
167 PF00176 SNF2_N: SNF2 family N 99.0 3E-09 6.5E-14 114.3 15.2 156 154-316 1-172 (299)
168 PF07652 Flavi_DEAD: Flaviviru 99.0 5.2E-10 1.1E-14 104.2 7.5 136 164-320 3-140 (148)
169 COG0553 HepA Superfamily II DN 99.0 2.1E-08 4.7E-13 123.9 22.0 112 358-479 692-808 (866)
170 KOG0333|consensus 98.9 9.4E-09 2E-13 112.0 14.4 225 374-614 321-574 (673)
171 COG0653 SecA Preprotein transl 98.9 3.7E-08 8E-13 115.2 19.1 127 152-288 80-213 (822)
172 smart00489 DEXDc3 DEAD-like he 98.9 1.5E-08 3.2E-13 108.4 14.6 73 150-224 8-84 (289)
173 smart00488 DEXDc2 DEAD-like he 98.9 1.5E-08 3.2E-13 108.4 14.6 73 150-224 8-84 (289)
174 KOG0328|consensus 98.9 2.7E-08 5.9E-13 100.7 15.1 219 374-614 94-323 (400)
175 PRK11634 ATP-dependent RNA hel 98.9 4.9E-08 1.1E-12 115.0 19.3 210 374-613 73-301 (629)
176 TIGR00614 recQ_fam ATP-depende 98.9 1.2E-07 2.5E-12 108.9 20.9 222 375-614 51-283 (470)
177 TIGR00580 mfd transcription-re 98.9 9.8E-08 2.1E-12 116.1 20.3 212 374-614 499-719 (926)
178 PRK10590 ATP-dependent RNA hel 98.8 1E-07 2.2E-12 109.0 19.2 214 376-614 76-302 (456)
179 PRK04837 ATP-dependent RNA hel 98.8 6.2E-08 1.3E-12 109.8 16.7 215 375-614 83-312 (423)
180 KOG0334|consensus 98.8 3.6E-08 7.8E-13 116.0 14.3 202 375-613 438-669 (997)
181 TIGR01389 recQ ATP-dependent D 98.8 2.8E-07 6.1E-12 108.9 21.8 219 375-613 53-280 (591)
182 KOG0341|consensus 98.8 1.6E-08 3.4E-13 106.2 9.0 242 374-647 245-531 (610)
183 PRK11776 ATP-dependent RNA hel 98.8 1.9E-07 4.1E-12 107.1 18.4 221 363-614 59-299 (460)
184 PRK10689 transcription-repair 98.8 1.3E-07 2.7E-12 117.7 17.8 215 374-613 648-867 (1147)
185 KOG0336|consensus 98.8 5.7E-08 1.2E-12 102.8 12.4 212 374-614 293-522 (629)
186 KOG1015|consensus 98.8 1.9E-07 4.2E-12 107.4 17.3 118 359-486 1127-1272(1567)
187 PRK04537 ATP-dependent RNA hel 98.8 2.7E-07 5.8E-12 108.0 19.2 210 375-614 84-314 (572)
188 PF07517 SecA_DEAD: SecA DEAD- 98.7 2.3E-07 4.9E-12 97.0 14.5 130 147-288 74-210 (266)
189 PRK11057 ATP-dependent DNA hel 98.7 1.2E-06 2.5E-11 103.6 21.7 217 375-614 65-293 (607)
190 PRK11192 ATP-dependent RNA hel 98.7 4.1E-07 8.8E-12 103.5 16.9 212 375-614 73-302 (434)
191 COG0610 Type I site-specific r 98.7 2E-06 4.4E-11 105.7 23.6 312 166-503 274-667 (962)
192 PLN03137 ATP-dependent DNA hel 98.6 1.1E-06 2.4E-11 106.2 19.9 220 375-613 500-736 (1195)
193 PRK10917 ATP-dependent DNA hel 98.6 7.6E-07 1.7E-11 106.4 18.4 213 374-614 309-538 (681)
194 PLN00206 DEAD-box ATP-dependen 98.6 5.9E-07 1.3E-11 104.2 16.2 57 555-614 368-425 (518)
195 KOG0952|consensus 98.6 1.5E-08 3.2E-13 118.3 2.3 132 150-290 927-1061(1230)
196 KOG0330|consensus 98.6 1.8E-06 3.9E-11 91.6 17.2 257 362-649 115-415 (476)
197 PRK01297 ATP-dependent RNA hel 98.6 2E-06 4.3E-11 99.0 18.3 218 375-614 162-392 (475)
198 KOG0338|consensus 98.6 8.1E-07 1.8E-11 96.8 13.7 229 374-644 251-533 (691)
199 COG0514 RecQ Superfamily II DN 98.5 3.9E-06 8.4E-11 96.0 18.7 217 375-613 57-286 (590)
200 TIGR00643 recG ATP-dependent D 98.5 4.2E-06 9.2E-11 99.4 17.9 214 374-614 283-515 (630)
201 TIGR00596 rad1 DNA repair prot 98.4 4.2E-06 9.2E-11 100.2 17.4 66 251-316 7-72 (814)
202 PRK14701 reverse gyrase; Provi 98.4 7E-06 1.5E-10 105.0 18.5 221 374-614 121-385 (1638)
203 TIGR03817 DECH_helic helicase/ 98.3 9E-06 2E-10 97.9 17.2 243 362-614 68-336 (742)
204 PRK15483 type III restriction- 98.3 6.4E-06 1.4E-10 98.8 14.5 143 166-318 60-240 (986)
205 TIGR01054 rgy reverse gyrase. 98.3 2E-05 4.3E-10 98.8 19.3 222 374-613 120-381 (1171)
206 PRK09751 putative ATP-dependen 98.3 1.7E-05 3.8E-10 99.9 18.1 331 375-717 37-464 (1490)
207 PTZ00424 helicase 45; Provisio 98.2 0.0001 2.2E-09 82.9 20.9 57 555-614 268-324 (401)
208 KOG0340|consensus 98.2 9.2E-06 2E-10 85.3 11.0 218 365-614 64-311 (442)
209 PRK09401 reverse gyrase; Revie 98.2 7.4E-05 1.6E-09 93.6 20.0 222 374-613 122-382 (1176)
210 KOG0327|consensus 98.2 5.9E-06 1.3E-10 87.9 8.5 69 547-618 256-324 (397)
211 TIGR02621 cas3_GSU0051 CRISPR- 98.1 5.8E-05 1.3E-09 90.1 17.5 57 553-614 271-343 (844)
212 PRK13767 ATP-dependent helicas 98.1 4.9E-05 1.1E-09 93.5 17.1 69 545-613 275-346 (876)
213 PF13086 AAA_11: AAA domain; P 98.1 2.7E-05 5.8E-10 80.1 12.7 73 150-223 1-75 (236)
214 PF13872 AAA_34: P-loop contai 98.1 4.2E-05 9.2E-10 80.4 14.0 179 123-321 17-225 (303)
215 PF02562 PhoH: PhoH-like prote 98.0 2.7E-05 5.8E-10 78.4 10.0 145 150-315 4-155 (205)
216 PF13604 AAA_30: AAA domain; P 98.0 1.9E-05 4E-10 79.8 8.2 123 150-315 1-130 (196)
217 PRK05580 primosome assembly pr 98.0 0.00028 6E-09 84.5 19.4 78 357-435 173-251 (679)
218 TIGR00595 priA primosomal prot 98.0 0.00044 9.5E-09 79.9 20.3 77 358-435 9-86 (505)
219 TIGR01587 cas3_core CRISPR-ass 97.9 0.00036 7.9E-09 77.2 18.4 73 541-614 209-285 (358)
220 KOG0326|consensus 97.9 2.6E-05 5.6E-10 80.8 6.6 210 375-614 153-379 (459)
221 KOG0332|consensus 97.8 0.00021 4.6E-09 75.8 12.7 64 547-614 324-387 (477)
222 KOG0342|consensus 97.8 0.0005 1.1E-08 75.5 15.4 220 374-614 153-387 (543)
223 PRK13766 Hef nuclease; Provisi 97.7 0.0023 5.1E-08 78.3 22.2 61 552-615 363-431 (773)
224 KOG1802|consensus 97.7 9.3E-05 2E-09 83.4 8.8 84 142-236 402-485 (935)
225 PHA02558 uvsW UvsW helicase; P 97.7 0.0016 3.5E-08 75.5 19.3 62 552-616 342-403 (501)
226 KOG1803|consensus 97.7 0.00012 2.6E-09 82.4 8.3 65 149-221 184-249 (649)
227 PF09848 DUF2075: Uncharacteri 97.6 0.00025 5.4E-09 78.4 9.9 108 167-302 3-117 (352)
228 TIGR01447 recD exodeoxyribonuc 97.6 0.00064 1.4E-08 79.6 13.6 142 152-314 147-294 (586)
229 PRK10536 hypothetical protein; 97.6 0.00076 1.7E-08 69.9 12.6 143 146-313 55-210 (262)
230 PRK10875 recD exonuclease V su 97.6 0.00055 1.2E-08 80.3 12.9 141 152-314 154-300 (615)
231 COG1200 RecG RecG-like helicas 97.6 0.0042 9E-08 71.7 19.1 214 374-614 310-540 (677)
232 PF12340 DUF3638: Protein of u 97.6 0.00099 2.1E-08 67.8 12.6 151 129-289 4-186 (229)
233 KOG1016|consensus 97.6 0.0021 4.5E-08 73.8 16.2 99 375-482 719-838 (1387)
234 TIGR00376 DNA helicase, putati 97.5 0.00058 1.3E-08 80.9 12.6 67 149-223 156-223 (637)
235 TIGR01448 recD_rel helicase, p 97.5 0.00096 2.1E-08 80.3 13.5 126 149-315 322-452 (720)
236 PRK02362 ski2-like helicase; P 97.4 0.0021 4.7E-08 78.0 15.8 71 544-614 233-336 (737)
237 KOG1132|consensus 97.4 0.0012 2.6E-08 77.4 11.9 78 150-227 21-136 (945)
238 KOG0351|consensus 97.4 0.0025 5.3E-08 77.6 14.8 220 376-613 305-541 (941)
239 KOG0343|consensus 97.3 0.0049 1.1E-07 68.8 14.8 211 374-614 140-372 (758)
240 PF13307 Helicase_C_2: Helicas 97.2 0.00087 1.9E-08 65.8 7.8 80 374-462 8-91 (167)
241 COG3587 Restriction endonuclea 97.2 0.00081 1.8E-08 78.4 8.4 45 424-477 482-526 (985)
242 COG1197 Mfd Transcription-repa 97.2 0.0056 1.2E-07 74.6 15.8 248 374-655 642-930 (1139)
243 PTZ00146 fibrillarin; Provisio 97.1 0.0055 1.2E-07 65.0 12.8 37 148-184 107-151 (293)
244 PF13245 AAA_19: Part of AAA d 97.1 0.0019 4.2E-08 54.4 7.4 60 158-221 2-62 (76)
245 PHA02653 RNA helicase NPH-II; 97.1 0.015 3.2E-07 69.2 17.5 56 554-614 395-453 (675)
246 PRK00254 ski2-like helicase; P 97.1 0.014 2.9E-07 71.0 17.6 61 365-433 59-122 (720)
247 COG1110 Reverse gyrase [DNA re 97.1 0.015 3.2E-07 69.6 17.0 231 372-617 122-396 (1187)
248 TIGR02768 TraA_Ti Ti-type conj 97.1 0.0041 8.9E-08 75.2 12.8 122 149-313 351-474 (744)
249 KOG1805|consensus 97.1 0.0029 6.2E-08 74.9 10.8 143 128-290 651-811 (1100)
250 PRK13889 conjugal transfer rel 97.1 0.0043 9.3E-08 76.3 12.8 124 149-315 345-470 (988)
251 TIGR00963 secA preprotein tran 97.0 0.0034 7.4E-08 74.2 11.2 63 547-614 398-460 (745)
252 PRK12723 flagellar biosynthesi 97.0 0.0078 1.7E-07 66.9 13.4 130 166-327 175-309 (388)
253 PRK04296 thymidine kinase; Pro 97.0 0.0022 4.8E-08 64.4 8.3 113 165-315 2-114 (190)
254 TIGR00631 uvrb excinuclease AB 97.0 0.0011 2.5E-08 78.6 7.1 61 551-614 439-499 (655)
255 PRK04914 ATP-dependent helicas 97.0 0.00088 1.9E-08 82.0 6.1 58 554-614 493-553 (956)
256 PRK13104 secA preprotein trans 97.0 0.0048 1E-07 74.1 12.0 62 547-613 437-498 (896)
257 PRK13826 Dtr system oriT relax 97.0 0.027 5.8E-07 70.0 18.5 124 149-315 380-505 (1102)
258 KOG0347|consensus 96.9 0.004 8.6E-08 69.4 9.7 206 378-613 266-519 (731)
259 PRK09694 helicase Cas3; Provis 96.9 0.042 9.2E-07 67.1 19.3 72 543-614 549-628 (878)
260 COG1875 NYN ribonuclease and A 96.9 0.0051 1.1E-07 65.9 9.6 142 146-314 224-386 (436)
261 TIGR02760 TraI_TIGR conjugativ 96.8 0.048 1E-06 72.5 20.5 237 150-424 429-685 (1960)
262 PRK05298 excinuclease ABC subu 96.8 0.002 4.2E-08 76.9 7.1 60 552-614 444-503 (652)
263 PRK08181 transposase; Validate 96.8 0.013 2.7E-07 62.1 12.3 110 161-319 102-212 (269)
264 COG3421 Uncharacterized protei 96.8 0.028 6E-07 63.6 15.1 142 170-319 2-168 (812)
265 PRK14722 flhF flagellar biosyn 96.8 0.0061 1.3E-07 67.2 10.0 131 164-328 136-270 (374)
266 KOG4284|consensus 96.8 0.0032 7E-08 71.2 7.7 220 375-615 93-330 (980)
267 PRK01172 ski2-like helicase; P 96.7 0.028 6.2E-07 67.7 16.2 65 550-614 232-318 (674)
268 PF13401 AAA_22: AAA domain; P 96.7 0.0036 7.8E-08 58.2 6.7 23 164-186 3-25 (131)
269 cd00009 AAA The AAA+ (ATPases 96.7 0.014 3E-07 54.5 10.8 17 165-181 19-35 (151)
270 COG1419 FlhF Flagellar GTP-bin 96.7 0.018 3.8E-07 63.3 12.6 133 165-329 203-337 (407)
271 KOG0345|consensus 96.7 0.043 9.3E-07 60.5 14.9 220 377-614 81-314 (567)
272 PRK11889 flhF flagellar biosyn 96.7 0.018 3.8E-07 63.4 12.1 129 166-328 242-375 (436)
273 PRK11664 ATP-dependent RNA hel 96.6 0.043 9.3E-07 67.0 16.5 58 554-614 212-272 (812)
274 PF05970 PIF1: PIF1-like helic 96.6 0.0039 8.4E-08 69.2 6.9 60 150-217 1-66 (364)
275 TIGR01970 DEAH_box_HrpB ATP-de 96.6 0.088 1.9E-06 64.2 18.9 58 554-614 209-269 (819)
276 PRK06526 transposase; Provisio 96.6 0.0048 1E-07 64.8 7.0 27 160-186 93-119 (254)
277 PRK14974 cell division protein 96.5 0.016 3.4E-07 63.2 11.0 131 166-328 141-276 (336)
278 PF13966 zf-RVT: zinc-binding 96.5 0.0011 2.3E-08 57.5 1.4 40 714-753 41-83 (86)
279 KOG0346|consensus 96.5 0.044 9.6E-07 59.9 13.7 206 374-616 92-327 (569)
280 PRK07952 DNA replication prote 96.4 0.048 1E-06 56.9 12.7 49 273-321 160-210 (244)
281 PF00448 SRP54: SRP54-type pro 96.3 0.0067 1.4E-07 61.2 6.2 131 167-327 3-136 (196)
282 PF14617 CMS1: U3-containing 9 96.3 0.0092 2E-07 62.0 7.0 87 199-286 124-212 (252)
283 PF00580 UvrD-helicase: UvrD/R 96.3 0.01 2.2E-07 63.9 7.6 123 151-285 1-125 (315)
284 KOG0337|consensus 96.2 0.31 6.6E-06 53.3 18.1 204 374-614 89-318 (529)
285 COG1201 Lhr Lhr-like helicases 96.2 0.1 2.2E-06 62.7 16.0 326 360-714 52-438 (814)
286 PRK06835 DNA replication prote 96.1 0.024 5.2E-07 61.8 9.7 48 273-320 244-293 (329)
287 smart00382 AAA ATPases associa 96.1 0.0085 1.8E-07 55.4 5.4 18 165-182 2-19 (148)
288 PRK05642 DNA replication initi 96.1 0.016 3.5E-07 60.1 8.0 46 273-318 95-141 (234)
289 PRK05703 flhF flagellar biosyn 96.1 0.053 1.1E-06 61.3 12.3 128 165-327 221-354 (424)
290 KOG0348|consensus 96.1 0.074 1.6E-06 59.5 12.7 74 360-440 189-275 (708)
291 KOG0989|consensus 96.0 0.032 7E-07 58.6 9.2 44 272-316 126-169 (346)
292 PRK06893 DNA replication initi 96.0 0.018 3.8E-07 59.7 7.4 47 273-319 89-137 (229)
293 PRK12898 secA preprotein trans 96.0 0.014 3E-07 68.6 7.2 67 543-614 458-528 (656)
294 PRK07764 DNA polymerase III su 95.9 0.069 1.5E-06 65.0 13.2 42 274-317 119-160 (824)
295 KOG1001|consensus 95.9 0.047 1E-06 64.8 11.4 138 167-316 154-292 (674)
296 PRK06921 hypothetical protein; 95.9 0.11 2.3E-06 55.1 13.2 18 164-181 116-133 (266)
297 PRK08084 DNA replication initi 95.9 0.024 5.2E-07 58.9 8.1 43 276-318 98-142 (235)
298 TIGR03158 cas3_cyano CRISPR-as 95.9 0.28 6.1E-06 54.3 16.7 59 547-614 263-325 (357)
299 cd01120 RecA-like_NTPases RecA 95.9 0.087 1.9E-06 50.4 11.2 39 168-214 2-40 (165)
300 PRK14723 flhF flagellar biosyn 95.8 0.064 1.4E-06 64.1 12.0 130 165-328 185-318 (767)
301 PF00271 Helicase_C: Helicase 95.8 0.012 2.6E-07 49.5 4.2 40 572-614 1-40 (78)
302 TIGR00603 rad25 DNA repair hel 95.8 0.47 1E-05 56.8 18.8 59 547-613 488-548 (732)
303 TIGR03714 secA2 accessory Sec 95.7 0.02 4.3E-07 68.3 7.2 67 542-613 408-478 (762)
304 cd01124 KaiC KaiC is a circadi 95.7 0.096 2.1E-06 51.9 11.1 49 168-225 2-50 (187)
305 PRK08727 hypothetical protein; 95.7 0.05 1.1E-06 56.5 9.2 48 273-320 91-140 (233)
306 cd00079 HELICc Helicase superf 95.6 0.033 7.2E-07 51.3 7.1 59 553-614 27-85 (131)
307 PRK07003 DNA polymerase III su 95.6 0.076 1.6E-06 63.0 11.2 39 274-313 118-156 (830)
308 KOG0383|consensus 95.6 0.0045 9.8E-08 72.4 1.0 78 359-438 616-696 (696)
309 PRK08116 hypothetical protein; 95.5 0.16 3.4E-06 54.0 12.5 48 273-321 176-226 (268)
310 PF01695 IstB_IS21: IstB-like 95.5 0.02 4.3E-07 56.9 5.3 47 162-217 44-90 (178)
311 PRK14964 DNA polymerase III su 95.5 0.17 3.7E-06 58.0 13.4 119 166-316 36-155 (491)
312 PF13173 AAA_14: AAA domain 95.5 0.089 1.9E-06 49.0 9.3 38 275-315 61-98 (128)
313 PRK12727 flagellar biosynthesi 95.4 0.24 5.1E-06 56.9 14.0 129 164-327 349-481 (559)
314 KOG3973|consensus 95.4 0.024 5.1E-07 59.5 5.4 7 38-44 368-374 (465)
315 PRK09200 preprotein translocas 95.4 0.027 5.8E-07 67.8 6.7 59 551-614 425-483 (790)
316 KOG1131|consensus 95.3 0.09 2E-06 58.6 9.9 73 147-223 13-89 (755)
317 TIGR03420 DnaA_homol_Hda DnaA 95.3 0.1 2.2E-06 53.6 9.9 42 276-317 91-133 (226)
318 PRK06731 flhF flagellar biosyn 95.3 0.3 6.5E-06 51.7 13.4 131 164-328 74-209 (270)
319 PRK00149 dnaA chromosomal repl 95.2 0.12 2.6E-06 59.2 11.3 48 274-321 210-259 (450)
320 PRK13107 preprotein translocas 95.2 0.03 6.6E-07 67.3 6.4 65 544-613 439-503 (908)
321 PRK08903 DnaA regulatory inact 95.2 0.17 3.6E-06 52.2 11.3 43 275-318 90-133 (227)
322 PRK12377 putative replication 95.2 0.14 3E-06 53.6 10.7 47 273-319 161-209 (248)
323 PHA02533 17 large terminase pr 95.2 0.14 3E-06 59.6 11.5 148 150-316 59-210 (534)
324 PRK12323 DNA polymerase III su 95.1 0.13 2.8E-06 60.2 10.9 41 273-314 122-162 (700)
325 KOG0349|consensus 95.1 0.031 6.8E-07 60.6 5.5 65 128-192 2-66 (725)
326 PRK14712 conjugal transfer nic 95.1 0.14 2.9E-06 66.0 11.8 62 150-217 835-900 (1623)
327 PHA02544 44 clamp loader, smal 95.1 0.13 2.9E-06 55.8 10.5 39 275-313 100-138 (316)
328 COG1444 Predicted P-loop ATPas 95.0 0.25 5.4E-06 58.7 13.1 148 142-316 206-356 (758)
329 PRK00771 signal recognition pa 95.0 0.16 3.4E-06 57.5 11.0 53 276-328 176-229 (437)
330 PRK05707 DNA polymerase III su 95.0 0.13 2.7E-06 56.3 9.8 38 150-187 3-44 (328)
331 COG2805 PilT Tfp pilus assembl 95.0 0.036 7.7E-07 58.2 5.2 54 122-194 100-153 (353)
332 PRK12422 chromosomal replicati 94.9 0.13 2.8E-06 58.6 10.2 50 274-323 201-252 (445)
333 PRK14087 dnaA chromosomal repl 94.8 0.23 4.9E-06 56.8 11.9 109 166-320 142-253 (450)
334 PRK14958 DNA polymerase III su 94.8 0.3 6.4E-06 56.6 13.0 39 274-313 118-156 (509)
335 smart00490 HELICc helicase sup 94.8 0.038 8.3E-07 46.2 4.3 44 568-614 1-44 (82)
336 PF05127 Helicase_RecD: Helica 94.8 0.01 2.3E-07 58.3 0.8 123 169-316 1-123 (177)
337 COG1484 DnaC DNA replication p 94.8 0.13 2.8E-06 54.1 9.0 51 164-223 104-154 (254)
338 PRK14086 dnaA chromosomal repl 94.7 0.37 7.9E-06 56.5 13.3 49 273-321 375-425 (617)
339 PRK08769 DNA polymerase III su 94.7 0.33 7.1E-06 52.7 12.2 39 148-186 2-47 (319)
340 PRK07994 DNA polymerase III su 94.7 0.22 4.8E-06 58.9 11.5 38 274-312 118-155 (647)
341 PRK12726 flagellar biosynthesi 94.7 0.23 4.9E-06 54.7 10.7 130 165-327 206-339 (407)
342 PRK09183 transposase/IS protei 94.7 0.26 5.6E-06 52.0 11.0 24 161-184 98-121 (259)
343 TIGR00362 DnaA chromosomal rep 94.6 0.21 4.5E-06 56.4 11.0 45 275-320 199-246 (405)
344 PRK14960 DNA polymerase III su 94.6 0.25 5.4E-06 58.0 11.6 41 274-316 117-157 (702)
345 PHA03333 putative ATPase subun 94.6 0.53 1.1E-05 55.3 13.9 138 162-317 184-333 (752)
346 KOG0344|consensus 94.6 0.29 6.2E-06 55.7 11.5 113 543-658 374-509 (593)
347 TIGR03499 FlhF flagellar biosy 94.6 0.28 6E-06 52.5 11.1 22 165-186 194-215 (282)
348 PRK14088 dnaA chromosomal repl 94.5 0.84 1.8E-05 52.0 15.5 49 275-323 194-244 (440)
349 COG2256 MGS1 ATPase related to 94.5 0.095 2.1E-06 57.2 7.3 19 166-184 49-67 (436)
350 PRK11331 5-methylcytosine-spec 94.5 0.1 2.2E-06 58.7 7.7 33 151-183 180-212 (459)
351 PF00308 Bac_DnaA: Bacterial d 94.5 0.44 9.4E-06 49.0 11.9 48 273-320 95-144 (219)
352 TIGR02881 spore_V_K stage V sp 94.4 0.24 5.3E-06 52.3 10.2 19 166-184 43-61 (261)
353 COG1205 Distinct helicase fami 94.4 0.83 1.8E-05 56.2 16.0 243 360-615 100-372 (851)
354 PRK09111 DNA polymerase III su 94.4 0.2 4.3E-06 59.1 10.2 40 273-313 130-169 (598)
355 PRK13709 conjugal transfer nic 94.4 0.3 6.4E-06 63.8 12.5 127 149-315 966-1099(1747)
356 PF13177 DNA_pol3_delta2: DNA 94.4 0.4 8.6E-06 46.8 10.8 42 274-316 101-142 (162)
357 PRK04195 replication factor C 94.3 0.24 5.1E-06 57.3 10.7 41 130-182 13-56 (482)
358 PRK05563 DNA polymerase III su 94.3 0.35 7.5E-06 56.8 12.0 21 166-186 39-59 (559)
359 PRK12900 secA preprotein trans 94.2 0.085 1.8E-06 64.0 6.9 127 150-288 138-271 (1025)
360 PRK08691 DNA polymerase III su 94.2 0.33 7.1E-06 57.5 11.4 40 273-313 117-156 (709)
361 TIGR01547 phage_term_2 phage t 94.2 0.17 3.7E-06 56.9 9.0 146 167-328 3-152 (396)
362 KOG0350|consensus 94.1 0.43 9.3E-06 53.3 11.4 67 547-614 423-490 (620)
363 PRK14952 DNA polymerase III su 94.1 0.48 1E-05 55.7 12.7 44 273-318 116-159 (584)
364 KOG0352|consensus 94.1 0.95 2.1E-05 49.7 13.7 246 375-645 61-334 (641)
365 PRK14961 DNA polymerase III su 94.1 0.28 6.2E-06 54.4 10.4 40 273-313 117-156 (363)
366 PRK14956 DNA polymerase III su 94.1 0.17 3.8E-06 57.5 8.6 20 167-186 42-61 (484)
367 PRK12904 preprotein translocas 94.1 0.1 2.3E-06 62.8 7.2 67 543-614 415-485 (830)
368 PRK14969 DNA polymerase III su 94.1 0.39 8.5E-06 56.0 11.8 40 541-581 321-360 (527)
369 PRK13833 conjugal transfer pro 94.0 0.18 3.8E-06 54.8 8.2 66 141-214 121-187 (323)
370 PF03354 Terminase_1: Phage Te 94.0 0.22 4.7E-06 57.5 9.5 149 153-313 1-160 (477)
371 COG1474 CDC6 Cdc6-related prot 93.9 1.1 2.4E-05 49.7 14.4 17 166-182 43-59 (366)
372 KOG1596|consensus 93.9 0.095 2.1E-06 53.0 5.4 20 147-166 130-149 (317)
373 PRK11773 uvrD DNA-dependent he 93.9 0.24 5.3E-06 60.1 10.1 109 149-286 8-119 (721)
374 PRK14721 flhF flagellar biosyn 93.9 1.3 2.9E-05 49.8 15.1 132 164-327 190-323 (420)
375 PF13871 Helicase_C_4: Helicas 93.9 0.18 3.9E-06 53.2 7.7 64 416-480 52-115 (278)
376 PRK06645 DNA polymerase III su 93.8 0.52 1.1E-05 54.5 12.0 21 166-186 44-64 (507)
377 PRK14965 DNA polymerase III su 93.8 0.65 1.4E-05 54.8 13.1 43 273-317 117-159 (576)
378 COG1204 Superfamily II helicas 93.8 1.6 3.5E-05 53.0 16.6 235 362-614 64-347 (766)
379 TIGR01075 uvrD DNA helicase II 93.7 0.19 4.1E-06 61.0 8.8 109 149-286 3-114 (715)
380 PRK14873 primosome assembly pr 93.7 0.27 5.9E-06 58.6 9.8 78 357-435 171-250 (665)
381 TIGR01425 SRP54_euk signal rec 93.7 0.74 1.6E-05 51.8 12.6 131 167-328 102-236 (429)
382 KOG0298|consensus 93.7 0.2 4.4E-06 61.5 8.5 148 164-316 373-550 (1394)
383 PHA00729 NTP-binding motif con 93.7 0.45 9.7E-06 48.8 9.9 74 253-326 60-138 (226)
384 PRK00411 cdc6 cell division co 93.7 0.8 1.7E-05 51.3 13.1 17 166-182 56-72 (394)
385 TIGR00064 ftsY signal recognit 93.6 0.87 1.9E-05 48.4 12.5 132 166-328 73-214 (272)
386 PRK14951 DNA polymerase III su 93.6 0.41 9E-06 56.5 10.9 44 273-318 122-165 (618)
387 PRK08939 primosomal protein Dn 93.6 0.38 8.3E-06 52.0 9.9 48 273-320 215-265 (306)
388 PRK14962 DNA polymerase III su 93.5 1 2.2E-05 51.8 13.5 19 167-185 38-56 (472)
389 PF00004 AAA: ATPase family as 93.4 0.92 2E-05 41.7 11.1 17 275-291 58-74 (132)
390 PF06745 KaiC: KaiC; InterPro 93.4 0.4 8.7E-06 49.3 9.4 134 164-316 18-160 (226)
391 PRK14959 DNA polymerase III su 93.4 1.1 2.4E-05 52.7 13.9 21 167-187 40-60 (624)
392 PLN03025 replication factor C 93.4 0.81 1.7E-05 49.8 12.2 41 274-316 98-138 (319)
393 PRK12402 replication factor C 93.3 0.48 1E-05 51.7 10.4 40 274-315 124-163 (337)
394 PRK07940 DNA polymerase III su 93.3 0.34 7.4E-06 54.2 9.2 45 273-319 115-159 (394)
395 TIGR02760 TraI_TIGR conjugativ 93.3 0.43 9.4E-06 63.7 11.4 62 149-217 1018-1084(1960)
396 PRK08533 flagellar accessory p 93.2 0.78 1.7E-05 47.5 11.2 53 163-224 22-74 (230)
397 PRK12906 secA preprotein trans 93.2 0.16 3.4E-06 61.1 6.6 61 547-612 433-493 (796)
398 PRK12724 flagellar biosynthesi 93.2 0.82 1.8E-05 51.2 11.7 126 166-327 224-356 (432)
399 PRK14949 DNA polymerase III su 93.1 0.76 1.6E-05 55.9 12.1 40 274-315 118-157 (944)
400 cd00561 CobA_CobO_BtuR ATP:cor 93.1 0.68 1.5E-05 44.9 9.8 53 273-325 93-147 (159)
401 PRK13894 conjugal transfer ATP 93.1 0.27 5.8E-06 53.5 7.7 67 139-213 123-190 (319)
402 PRK06995 flhF flagellar biosyn 93.0 0.35 7.6E-06 55.3 8.8 23 165-187 256-278 (484)
403 smart00492 HELICc3 helicase su 93.0 0.73 1.6E-05 43.8 9.7 41 404-444 26-67 (141)
404 COG1435 Tdk Thymidine kinase [ 93.0 1.2 2.6E-05 44.4 11.2 91 166-288 5-95 (201)
405 PRK11054 helD DNA helicase IV; 93.0 0.41 8.8E-06 57.5 9.7 107 149-285 195-302 (684)
406 PRK14957 DNA polymerase III su 92.9 0.79 1.7E-05 53.4 11.7 40 273-313 117-156 (546)
407 COG0593 DnaA ATPase involved i 92.9 0.48 1E-05 52.8 9.4 47 275-321 175-223 (408)
408 PTZ00112 origin recognition co 92.9 1.1 2.4E-05 54.1 12.8 17 168-184 784-800 (1164)
409 PRK14950 DNA polymerase III su 92.9 1.1 2.5E-05 53.0 13.2 20 167-186 40-59 (585)
410 TIGR03881 KaiC_arch_4 KaiC dom 92.9 1 2.2E-05 46.4 11.4 52 164-224 19-70 (229)
411 PRK08699 DNA polymerase III su 92.9 0.66 1.4E-05 50.6 10.4 36 152-187 3-43 (325)
412 PF05621 TniB: Bacterial TniB 92.9 0.43 9.4E-06 50.8 8.6 121 166-312 62-186 (302)
413 COG3973 Superfamily I DNA and 92.9 0.61 1.3E-05 53.5 10.2 91 134-226 188-285 (747)
414 COG0470 HolB ATPase involved i 92.8 0.65 1.4E-05 50.3 10.4 40 273-313 107-146 (325)
415 PRK14955 DNA polymerase III su 92.8 1.4 3E-05 49.7 13.2 20 167-186 40-59 (397)
416 CHL00181 cbbX CbbX; Provisiona 92.8 1.1 2.4E-05 48.0 11.8 21 165-185 59-79 (287)
417 PRK10919 ATP-dependent DNA hel 92.7 0.23 5.1E-06 59.7 7.3 70 150-225 2-71 (672)
418 cd03115 SRP The signal recogni 92.7 2.5 5.5E-05 41.3 13.6 55 274-328 81-136 (173)
419 PRK06964 DNA polymerase III su 92.7 0.75 1.6E-05 50.4 10.5 36 152-187 3-43 (342)
420 TIGR01967 DEAH_box_HrpA ATP-de 92.7 1.6 3.5E-05 55.5 14.6 57 555-613 280-336 (1283)
421 PRK13342 recombination factor 92.6 0.64 1.4E-05 52.6 10.4 18 166-183 37-54 (413)
422 TIGR00708 cobA cob(I)alamin ad 92.6 1.8 3.8E-05 42.6 12.0 53 273-325 95-149 (173)
423 PRK07471 DNA polymerase III su 92.6 1.3 2.9E-05 49.1 12.4 41 273-314 139-179 (365)
424 cd01122 GP4d_helicase GP4d_hel 92.6 0.25 5.5E-06 52.3 6.6 119 162-290 27-155 (271)
425 TIGR02782 TrbB_P P-type conjug 92.5 0.41 8.9E-06 51.6 8.1 67 140-214 108-175 (299)
426 TIGR01074 rep ATP-dependent DN 92.5 0.61 1.3E-05 56.3 10.5 109 150-286 1-112 (664)
427 PF05876 Terminase_GpA: Phage 92.5 0.2 4.4E-06 58.6 6.2 126 150-289 16-148 (557)
428 COG1198 PriA Primosomal protei 92.4 0.36 7.7E-06 57.7 8.0 83 351-434 222-305 (730)
429 PRK06871 DNA polymerase III su 92.3 1 2.2E-05 49.1 10.9 43 273-317 105-147 (325)
430 TIGR02928 orc1/cdc6 family rep 92.3 1.4 2.9E-05 48.9 12.3 17 166-182 41-57 (365)
431 PF05496 RuvB_N: Holliday junc 92.3 0.8 1.7E-05 46.8 9.3 16 167-182 52-67 (233)
432 smart00491 HELICc2 helicase su 92.3 0.77 1.7E-05 43.7 8.8 58 387-444 3-68 (142)
433 PRK14963 DNA polymerase III su 92.3 0.8 1.7E-05 53.0 10.6 18 168-185 39-56 (504)
434 PTZ00293 thymidine kinase; Pro 92.2 1.1 2.4E-05 45.5 10.2 39 165-211 4-42 (211)
435 TIGR03877 thermo_KaiC_1 KaiC d 92.2 0.59 1.3E-05 48.6 8.6 53 164-225 20-72 (237)
436 TIGR02880 cbbX_cfxQ probable R 92.1 1.7 3.6E-05 46.5 12.2 19 165-183 58-76 (284)
437 PRK05986 cob(I)alamin adenolsy 92.1 0.55 1.2E-05 46.8 7.7 141 164-325 21-167 (191)
438 KOG0701|consensus 92.0 0.12 2.7E-06 65.7 3.8 94 377-479 294-399 (1606)
439 TIGR02525 plasmid_TraJ plasmid 92.0 0.38 8.3E-06 53.3 7.2 27 165-192 149-175 (372)
440 PHA03368 DNA packaging termina 91.9 0.8 1.7E-05 53.6 9.9 136 163-318 252-392 (738)
441 COG1219 ClpX ATP-dependent pro 91.9 0.26 5.6E-06 52.3 5.4 26 165-192 97-122 (408)
442 PRK14948 DNA polymerase III su 91.9 0.84 1.8E-05 54.2 10.4 21 166-186 39-59 (620)
443 COG2909 MalT ATP-dependent tra 91.9 0.37 8E-06 57.4 7.2 45 273-317 127-171 (894)
444 PRK13341 recombination factor 91.8 0.8 1.7E-05 55.3 10.2 40 275-319 109-148 (725)
445 TIGR02785 addA_Gpos recombinat 91.8 0.67 1.4E-05 59.7 10.1 124 150-286 1-126 (1232)
446 PRK06620 hypothetical protein; 91.7 0.31 6.6E-06 49.9 5.8 16 166-181 45-60 (214)
447 PRK05896 DNA polymerase III su 91.7 1.9 4.1E-05 50.6 12.8 21 166-186 39-59 (605)
448 COG1202 Superfamily II helicas 91.7 2.3 4.9E-05 48.6 12.6 56 556-614 442-497 (830)
449 PRK05973 replicative DNA helic 91.6 2 4.3E-05 44.6 11.5 81 134-224 24-114 (237)
450 PRK07993 DNA polymerase III su 91.5 0.78 1.7E-05 50.3 9.0 36 151-186 3-45 (334)
451 TIGR03015 pepcterm_ATPase puta 91.5 1.2 2.6E-05 47.0 10.2 33 151-183 24-61 (269)
452 PRK08451 DNA polymerase III su 91.3 1.9 4.1E-05 50.1 12.2 40 273-313 115-154 (535)
453 PRK10867 signal recognition pa 91.3 1.2 2.6E-05 50.4 10.5 132 167-328 102-237 (433)
454 PRK10416 signal recognition pa 91.3 3.5 7.7E-05 44.8 13.7 55 274-328 195-256 (318)
455 TIGR00959 ffh signal recogniti 91.3 1.8 3.9E-05 49.0 11.7 55 274-328 181-236 (428)
456 KOG0738|consensus 91.2 8.1 0.00017 42.5 15.8 16 166-181 246-261 (491)
457 PRK06067 flagellar accessory p 91.2 2.6 5.6E-05 43.6 12.2 52 164-224 24-75 (234)
458 KOG2028|consensus 91.2 0.54 1.2E-05 50.7 6.9 40 274-318 221-260 (554)
459 KOG0745|consensus 91.1 0.36 7.8E-06 53.2 5.7 25 166-192 227-251 (564)
460 KOG0739|consensus 91.1 4.3 9.3E-05 42.9 13.1 124 160-334 156-296 (439)
461 COG4962 CpaF Flp pilus assembl 90.8 0.64 1.4E-05 50.2 7.2 60 147-215 154-214 (355)
462 TIGR02639 ClpA ATP-dependent C 90.8 1.8 3.9E-05 52.7 12.1 44 277-320 276-323 (731)
463 PF03969 AFG1_ATPase: AFG1-lik 90.7 2.5 5.4E-05 46.8 12.0 110 165-320 62-172 (362)
464 PRK11131 ATP-dependent RNA hel 90.7 0.29 6.4E-06 61.8 5.2 58 555-614 287-344 (1294)
465 PRK09112 DNA polymerase III su 90.6 2.2 4.7E-05 47.2 11.4 43 273-317 139-181 (351)
466 PRK11034 clpA ATP-dependent Cl 90.6 1.4 3E-05 53.6 10.6 46 276-321 279-328 (758)
467 TIGR02524 dot_icm_DotB Dot/Icm 90.5 0.36 7.9E-06 53.3 5.3 27 164-191 133-159 (358)
468 KOG1596|consensus 90.5 0.37 8E-06 48.9 4.7 6 174-179 165-170 (317)
469 cd00984 DnaB_C DnaB helicase C 90.5 1.7 3.8E-05 44.9 10.2 39 163-208 11-49 (242)
470 PRK14954 DNA polymerase III su 90.4 2.3 5.1E-05 50.4 12.1 20 167-186 40-59 (620)
471 PRK06090 DNA polymerase III su 90.2 1.5 3.3E-05 47.6 9.6 38 150-187 3-47 (319)
472 KOG1133|consensus 90.2 0.41 8.8E-06 55.5 5.3 43 150-192 15-61 (821)
473 PRK00440 rfc replication facto 89.8 2.9 6.2E-05 45.2 11.5 38 275-313 102-139 (319)
474 PRK13851 type IV secretion sys 89.7 0.43 9.2E-06 52.4 4.9 45 161-214 158-202 (344)
475 PRK11823 DNA repair protein Ra 89.7 2.4 5.1E-05 48.5 11.1 92 164-289 79-170 (446)
476 PRK06647 DNA polymerase III su 89.6 6.4 0.00014 46.3 14.8 43 273-317 117-159 (563)
477 PRK13900 type IV secretion sys 89.4 0.93 2E-05 49.6 7.3 44 161-213 156-199 (332)
478 PRK14971 DNA polymerase III su 89.4 2.5 5.4E-05 50.3 11.3 43 272-316 118-160 (614)
479 PRK06305 DNA polymerase III su 89.3 3.4 7.3E-05 47.3 12.0 20 167-186 41-60 (451)
480 TIGR00678 holB DNA polymerase 89.3 3.3 7.1E-05 41.2 10.6 41 273-315 94-134 (188)
481 TIGR03878 thermo_KaiC_2 KaiC d 89.3 2.1 4.5E-05 45.2 9.6 38 164-209 35-72 (259)
482 PRK10865 protein disaggregatio 89.2 1.6 3.4E-05 54.1 9.8 47 276-322 272-321 (857)
483 KOG0734|consensus 89.1 3.4 7.3E-05 47.0 11.1 47 274-320 395-452 (752)
484 KOG0991|consensus 89.1 1.3 2.8E-05 45.1 7.3 38 274-312 112-149 (333)
485 COG2804 PulE Type II secretory 89.0 0.61 1.3E-05 52.8 5.5 40 152-192 243-284 (500)
486 TIGR03346 chaperone_ClpB ATP-d 88.9 1.7 3.7E-05 53.9 9.9 48 275-322 266-316 (852)
487 TIGR01420 pilT_fam pilus retra 88.8 1 2.3E-05 49.5 7.2 43 164-213 121-163 (343)
488 cd01121 Sms Sms (bacterial rad 88.6 2.2 4.8E-05 47.4 9.6 91 164-288 81-171 (372)
489 PRK14953 DNA polymerase III su 88.6 5.4 0.00012 46.1 13.1 41 273-315 117-157 (486)
490 PRK04328 hypothetical protein; 88.5 3 6.5E-05 43.7 10.1 53 164-225 22-74 (249)
491 PF00437 T2SE: Type II/IV secr 88.5 0.54 1.2E-05 49.8 4.6 43 163-213 125-167 (270)
492 PF02572 CobA_CobO_BtuR: ATP:c 88.4 3.9 8.4E-05 40.2 10.0 53 273-325 94-148 (172)
493 PF02534 T4SS-DNA_transf: Type 88.3 0.51 1.1E-05 54.3 4.6 49 166-224 45-93 (469)
494 CHL00095 clpC Clp protease ATP 88.3 2.9 6.4E-05 51.6 11.3 23 166-188 201-223 (821)
495 KOG0742|consensus 88.2 4.7 0.0001 44.4 11.2 15 166-180 385-399 (630)
496 PRK13764 ATPase; Provisional 88.2 0.95 2E-05 53.2 6.6 27 164-191 256-282 (602)
497 PRK06904 replicative DNA helic 88.1 5.1 0.00011 46.1 12.5 157 147-313 203-381 (472)
498 cd01129 PulE-GspE PulE/GspE Th 88.1 0.97 2.1E-05 47.8 6.2 61 125-207 54-114 (264)
499 PF05729 NACHT: NACHT domain 88.1 6 0.00013 37.7 11.3 142 166-340 1-151 (166)
500 TIGR02655 circ_KaiC circadian 88.0 2.4 5.2E-05 49.0 9.8 129 162-317 260-399 (484)
No 1
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=1.7e-68 Score=615.87 Aligned_cols=412 Identities=49% Similarity=0.783 Sum_probs=377.0
Q ss_pred CCCCCCCCCCCCcccccccccCCCCCccCCCCChHHHHHhhhcCCeEE-ecccccccccCCCCCCCCCCCCCCcCCCCCH
Q psy17912 59 SNSNLRTPNWNSMSMEQINKNLYTPNHLTVSRSQGEVESYLNHHDVTV-KGRYYLLRLESRPGKCVPRPIQHFEECNFPP 137 (779)
Q Consensus 59 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~-~g~~~~~~~~~~~~~~~p~pi~~f~~~~l~~ 137 (779)
.+..+...+|+....++++++||.+++.+..++.++++.++....+.+ .|.. .|+|+.+|+++++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~------------~p~p~~~f~~~~l~~ 139 (545)
T PTZ00110 72 LGKRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGEN------------VPKPVVSFEYTSFPD 139 (545)
T ss_pred cccccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCC------------CCcccCCHhhcCCCH
Confidence 345677899999999999999999999999999999999999888876 4544 899999999999999
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHH
Q psy17912 138 YIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQI 217 (779)
Q Consensus 138 ~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~ 217 (779)
.+++.|.++||.+|||+|.++||.+++|+|+|++||||||||++|++|++.++..++......+|.+|||+||++||.|+
T Consensus 140 ~l~~~l~~~g~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi 219 (545)
T PTZ00110 140 YILKSLKNAGFTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQI 219 (545)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998876555556689999999999999999
Q ss_pred HHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHH
Q psy17912 218 ETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIR 297 (779)
Q Consensus 218 ~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~ 297 (779)
.+.+.+++...++++.+++|+.+...+...+..+++|+|+||++|++++......++++++|||||||+|++++|...+.
T Consensus 220 ~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~gf~~~i~ 299 (545)
T PTZ00110 220 REQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMGFEPQIR 299 (545)
T ss_pred HHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcchHHHHH
Confidence 99999999988999999999999888888888899999999999999998888889999999999999999999999999
Q ss_pred HHHhhcCCCCceEEeeccccHHHHHHHHHhcc-CcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCC
Q psy17912 298 KIIGQIRPDRQVLMWSATWPKEVQKLAEDFLV-DYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTS 376 (779)
Q Consensus 298 ~il~~l~~~~qilllSAT~~~~v~~l~~~~l~-~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~ 376 (779)
+++..+++++|++++|||+|.+++.++..++. +++.+.++........++.+.+..+....|...|..++..+.. ...
T Consensus 300 ~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~-~~~ 378 (545)
T PTZ00110 300 KIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMR-DGD 378 (545)
T ss_pred HHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcc-cCC
Confidence 99999999999999999999999999998886 5788877766655667788888888888888889888887643 568
Q ss_pred cEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEE
Q psy17912 377 KTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILV 456 (779)
Q Consensus 377 kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~V 456 (779)
++||||++++.|+.|+..|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+|+ +|
T Consensus 379 k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~---------~V 449 (545)
T PTZ00110 379 KILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVK---------YV 449 (545)
T ss_pred eEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCC---------EE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHH
Q psy17912 457 SQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQER 492 (779)
Q Consensus 457 I~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~ 492 (779)
|+|++|.++++|+||+||+||+|..+.+++...++.
T Consensus 450 I~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~~ 485 (545)
T PTZ00110 450 INFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPDK 485 (545)
T ss_pred EEeCCCCCHHHHHHHhcccccCCCCceEEEEECcch
Confidence 999999999999999999999998876665544433
No 2
>KOG0331|consensus
Probab=100.00 E-value=5.2e-70 Score=598.36 Aligned_cols=415 Identities=51% Similarity=0.792 Sum_probs=371.5
Q ss_pred cccccccccCCCCCccCCCCChHHHHHhhhcCCeEEeccc-ccccccCCCCCCCC-----------------CCCCCCcC
Q psy17912 71 MSMEQINKNLYTPNHLTVSRSQGEVESYLNHHDVTVKGRY-YLLRLESRPGKCVP-----------------RPIQHFEE 132 (779)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~~g~~-~~~~~~~~~~~~~p-----------------~pi~~f~~ 132 (779)
....++.+++|.+.+........+.+.++..+++.+++.. ...+.........| .+-..|.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 4566889999998887777777777888888888777755 11111111100011 11124677
Q ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhc-cCCCCCCCCCEEEEEccCH
Q psy17912 133 CNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNS-QRPLRSGEGPIVLVLAPTR 211 (779)
Q Consensus 133 ~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~-~~~~~~~~~~~vLil~Ptr 211 (779)
++++++++..++..||+.|||+|.+.||.++.|+|++..|.||||||++|++|++.++.. +.....+++|++|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 788899999999999999999999999999999999999999999999999999999998 5666677899999999999
Q ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC
Q psy17912 212 ELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG 291 (779)
Q Consensus 212 ~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~ 291 (779)
|||.|+.+.+.+++..+.++..|++||.+...|.+.+.++++|+|+||++|++++..+.+.|+++.|+|+||||+|++++
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHhhc-CCCCceEEeeccccHHHHHHHHHhccCcEEEecCCC-CCCCccceEEEEEeccccchhHHHHHHHHH
Q psy17912 292 FEPQIRKIIGQI-RPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSL-NPTANHNIVQIVDVCQEHEKDYKLQGLLSQ 369 (779)
Q Consensus 292 f~~~l~~il~~l-~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~-~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~ 369 (779)
|++++++|+..+ ++++|++++|||||.+++.++..|+.+|+.+.++.. ...+++++.|++..++...|...|..+|..
T Consensus 256 Fe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~ 335 (519)
T KOG0331|consen 256 FEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLED 335 (519)
T ss_pred cHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHH
Confidence 999999999999 677899999999999999999999999999999876 677889999999999999999999999999
Q ss_pred hccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccc
Q psy17912 370 IGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRI 449 (779)
Q Consensus 370 i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~ 449 (779)
+.....+++||||+|++.|++|+..|+..++++.+|||+.+|.+|+.+++.|++|+..|||||++|++|||+|+|+
T Consensus 336 ~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~---- 411 (519)
T KOG0331|consen 336 ISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVD---- 411 (519)
T ss_pred HhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccCCcceEEEcccccccCCCcccc----
Confidence 8767788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHH
Q psy17912 450 GRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDR 494 (779)
Q Consensus 450 ~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~ 494 (779)
+||+||+|.+.++|+||+||+||+|..+.+++........
T Consensus 412 -----lVInydfP~~vEdYVHRiGRTGRa~~~G~A~tfft~~~~~ 451 (519)
T KOG0331|consen 412 -----LVINYDFPNNVEDYVHRIGRTGRAGKKGTAITFFTSDNAK 451 (519)
T ss_pred -----EEEeCCCCCCHHHHHhhcCccccCCCCceEEEEEeHHHHH
Confidence 9999999999999999999999988777666655544433
No 3
>KOG0336|consensus
Probab=100.00 E-value=5.5e-65 Score=524.98 Aligned_cols=411 Identities=36% Similarity=0.580 Sum_probs=370.2
Q ss_pred ccccccccCCCCCccCCCCChHHHHHhhhcCCeEEecccccccccCCCCCCCCCCCCCCcCC-CCCHHHHHHHHHcCCCC
Q psy17912 72 SMEQINKNLYTPNHLTVSRSQGEVESYLNHHDVTVKGRYYLLRLESRPGKCVPRPIQHFEEC-NFPPYIMKKIYEMGFQA 150 (779)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~~g~~~~~~~~~~~~~~~p~pi~~f~~~-~l~~~l~~~l~~~g~~~ 150 (779)
..||+.++||.+..+.+.+++.++.++++++....-.+ +..-....+|+|+.+|++. .-.+++++++.+.||.+
T Consensus 168 ~lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd-----~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqK 242 (629)
T KOG0336|consen 168 KLPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDD-----LKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQK 242 (629)
T ss_pred cCCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecc-----cccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCC
Confidence 45689999999999999999999999998764332221 2333445689999999985 46799999999999999
Q ss_pred CCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCC-CCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC
Q psy17912 151 PTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPL-RSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229 (779)
Q Consensus 151 p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~-~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 229 (779)
|+|+|++|||.+++|+|++.+|+||+|||++|++|.+.++..++.. ....+|.+|+++||++||.|+.-++.++.. .+
T Consensus 243 PtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysy-ng 321 (629)
T KOG0336|consen 243 PTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSY-NG 321 (629)
T ss_pred CCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhh-cC
Confidence 9999999999999999999999999999999999999998887543 345689999999999999999988887743 48
Q ss_pred ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCce
Q psy17912 230 TRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQV 309 (779)
Q Consensus 230 l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qi 309 (779)
++.+|++|+.++.++...+.++.+|+++||++|.++...+.+++.++.|||+||||+|++++|++++++|+..++|++|+
T Consensus 322 ~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilldiRPDRqt 401 (629)
T KOG0336|consen 322 LKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLDIRPDRQT 401 (629)
T ss_pred cceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhhcCCccee
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHH
Q psy17912 310 LMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKAD 389 (779)
Q Consensus 310 lllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae 389 (779)
++.|||||+.+..++..|+.+|+.+.++..+......++|.+.+..+.+|...+..++..+. ...++||||..+-.|+
T Consensus 402 vmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms--~ndKvIiFv~~K~~AD 479 (629)
T KOG0336|consen 402 VMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMS--SNDKVIIFVSRKVMAD 479 (629)
T ss_pred eeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcC--CCceEEEEEechhhhh
Confidence 99999999999999999999999999999999999999999988888888877777776542 5689999999999999
Q ss_pred HHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHH
Q psy17912 390 DITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRV 469 (779)
Q Consensus 390 ~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yi 469 (779)
.|...|.-.|+.+-.+||+-++.+|+.+++.|++|+++|||||+++++|||++++. +|++||.|.++++|+
T Consensus 480 ~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiT---------HV~NyDFP~nIeeYV 550 (629)
T KOG0336|consen 480 HLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDIT---------HVYNYDFPRNIEEYV 550 (629)
T ss_pred hccchhhhcccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcc---------eeeccCCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988 999999999999999
Q ss_pred HHhccCCCCCCeEEEEEcChHHHHHHHHhh
Q psy17912 470 LNEFRIGRASILVSHYNKSQQERDRVLNEF 499 (779)
Q Consensus 470 QR~GRaGR~g~~~~~~~~~~~e~~~~l~e~ 499 (779)
||+||+||+|..|+.++.-..+...+..++
T Consensus 551 HRvGrtGRaGr~G~sis~lt~~D~~~a~eL 580 (629)
T KOG0336|consen 551 HRVGRTGRAGRTGTSISFLTRNDWSMAEEL 580 (629)
T ss_pred HHhcccccCCCCcceEEEEehhhHHHHHHH
Confidence 999999999988877666555555555444
No 4
>KOG0333|consensus
Probab=100.00 E-value=1.3e-62 Score=522.28 Aligned_cols=385 Identities=36% Similarity=0.571 Sum_probs=352.1
Q ss_pred CCChHHHHHhhhcCCeEEecccccccccCCCCCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCE
Q psy17912 89 SRSQGEVESYLNHHDVTVKGRYYLLRLESRPGKCVPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDL 168 (779)
Q Consensus 89 ~~~~~e~~~~~~~~~i~~~g~~~~~~~~~~~~~~~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dv 168 (779)
.++..+|.-|+....+.++|.. +|+|+.+|++.+||.++++.+.+.||..|+|+|.+++|..++++|+
T Consensus 218 Em~~rdwri~redynis~kg~~------------lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~ 285 (673)
T KOG0333|consen 218 EMTERDWRIFREDYNISIKGGR------------LPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDP 285 (673)
T ss_pred hcCCccceeeecceeeeecCCC------------CCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCe
Confidence 3445566666667777777766 9999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCChhHHHHHHHHHHHhccCCCC----CCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhh
Q psy17912 169 VAIAKTGSGKTLGYIAPAIVHVNSQRPLR----SGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQ 244 (779)
Q Consensus 169 ii~apTGsGKTl~~~lp~l~~l~~~~~~~----~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~ 244 (779)
|..+.||||||++|++|++.++...|+.. ...||.++|++|||+||+|+.++-.+|+..++++++.+.||.+.+++
T Consensus 286 igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq 365 (673)
T KOG0333|consen 286 IGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQ 365 (673)
T ss_pred eeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhh
Confidence 99999999999999999999999877433 34689999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCC------------------
Q psy17912 245 VKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPD------------------ 306 (779)
Q Consensus 245 ~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~------------------ 306 (779)
...+..+|+|+|+||++|++.|.+..+.+.++.+||+||||+|.|++|++.+.+++.+++..
T Consensus 366 ~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~ 445 (673)
T KOG0333|consen 366 GFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKN 445 (673)
T ss_pred hhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhh
Confidence 88999999999999999999999988899999999999999999999999999999988621
Q ss_pred -------CceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEE
Q psy17912 307 -------RQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTI 379 (779)
Q Consensus 307 -------~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvL 379 (779)
+|+++||||+|+.++.+++.|+.+|+.+.++.... ....+.|.+.++...+|..+|..+|+.. ...++|
T Consensus 446 ~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk-~~~rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiI 521 (673)
T KOG0333|consen 446 FSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGK-PTPRVEQKVEMVSEDEKRKKLIEILESN---FDPPII 521 (673)
T ss_pred cccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCC-CccchheEEEEecchHHHHHHHHHHHhC---CCCCEE
Confidence 79999999999999999999999999999999884 4457888888888888888898888864 578999
Q ss_pred EEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEc
Q psy17912 380 IFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQY 459 (779)
Q Consensus 380 VF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y 459 (779)
||+|+++.|+.||+.|.+.|+.++.|||+.++++|+.++..|++|...|||||+++++|||+|+|. +||+|
T Consensus 522 IFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVS---------lViny 592 (673)
T KOG0333|consen 522 IFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVS---------LVINY 592 (673)
T ss_pred EEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccc---------eeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999998 99999
Q ss_pred CCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHh
Q psy17912 460 KESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 498 (779)
Q Consensus 460 ~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e 498 (779)
|++.++++|+||+||+||+|..|++++.-.++...++.+
T Consensus 593 dmaksieDYtHRIGRTgRAGk~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 593 DMAKSIEDYTHRIGRTGRAGKSGTAISFLTPADTAVFYD 631 (673)
T ss_pred chhhhHHHHHHHhccccccccCceeEEEeccchhHHHHH
Confidence 999999999999999999998887777666555444443
No 5
>KOG0330|consensus
Probab=100.00 E-value=5.7e-62 Score=502.18 Aligned_cols=348 Identities=33% Similarity=0.462 Sum_probs=328.1
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEE
Q psy17912 125 RPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIV 204 (779)
Q Consensus 125 ~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~v 204 (779)
....+|.++++.+.+.+++...++..||++|+++||.++.|+|+|+.|+||||||.+|++|+++++..++ +.+.+
T Consensus 58 e~~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p-----~~~~~ 132 (476)
T KOG0330|consen 58 ESFKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEP-----KLFFA 132 (476)
T ss_pred hhhcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCC-----CCceE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999865 34799
Q ss_pred EEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHH-cCCcCCCCeeEEEEcc
Q psy17912 205 LVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLE-QGTINLHRTSYLVLDE 283 (779)
Q Consensus 205 Lil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~-~~~~~l~~i~~lViDE 283 (779)
+|++||||||.|+.+.+..++...|+++.++.||.+...+...+.+.++|+|||||+|.+++. .+.+++..++++|+||
T Consensus 133 lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDE 212 (476)
T KOG0330|consen 133 LVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDE 212 (476)
T ss_pred EEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhch
Confidence 999999999999999999999999999999999999999999999999999999999999998 4668999999999999
Q ss_pred chhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHH
Q psy17912 284 ADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKL 363 (779)
Q Consensus 284 aH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L 363 (779)
||++++++|...+.+|++.++..+|++++|||+|..+.++...-+.+|+.+.+......+ ..++|.+.+++..+|..+|
T Consensus 213 ADrlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv-~~lkQ~ylfv~~k~K~~yL 291 (476)
T KOG0330|consen 213 ADRLLDMDFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTV-DHLKQTYLFVPGKDKDTYL 291 (476)
T ss_pred HHhhhhhhhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcch-HHhhhheEeccccccchhH
Confidence 999999999999999999999999999999999999999999999999999988877444 5678888889999999999
Q ss_pred HHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCc
Q psy17912 364 QGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRV 443 (779)
Q Consensus 364 ~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~ 443 (779)
..++++. .+.++||||++..+++.++-.|+..|+.+..+||.|++..|..+++.|++|.+.||||||+++||+|+|.
T Consensus 292 V~ll~e~---~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~ 368 (476)
T KOG0330|consen 292 VYLLNEL---AGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPH 368 (476)
T ss_pred HHHHHhh---cCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCC
Confidence 9999976 4688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChH
Q psy17912 444 LNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQ 490 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~ 490 (779)
|+ +|||||.|.+..+||||+||++|+|..|.+++.-.+
T Consensus 369 Vd---------~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtq 406 (476)
T KOG0330|consen 369 VD---------VVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQ 406 (476)
T ss_pred ce---------EEEecCCCCcHHHHHHHcccccccCCCcceEEEEeh
Confidence 99 999999999999999999999999988877766554
No 6
>KOG0339|consensus
Probab=100.00 E-value=2.6e-61 Score=509.41 Aligned_cols=409 Identities=40% Similarity=0.597 Sum_probs=380.8
Q ss_pred CCCCCCCCCcccccccccCCCCCccCCCCChHHHHHhhhcCCeEEecccccccccCCCCCCCCCCCCCCcCCCCCHHHHH
Q psy17912 62 NLRTPNWNSMSMEQINKNLYTPNHLTVSRSQGEVESYLNHHDVTVKGRYYLLRLESRPGKCVPRPIQHFEECNFPPYIMK 141 (779)
Q Consensus 62 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~~g~~~~~~~~~~~~~~~p~pi~~f~~~~l~~~l~~ 141 (779)
.+..++++....++|+++||.++..+..++..+...++....+.+.|.. .|+|+.+|++.+++..++.
T Consensus 169 pl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlrv~g~s------------~~rpvtsfeh~gfDkqLm~ 236 (731)
T KOG0339|consen 169 PLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLRVSGSS------------PPRPVTSFEHFGFDKQLMT 236 (731)
T ss_pred CCCCcchhhccccccccccccChhhhhccccccchhhHhhhcceeccCC------------CCCCcchhhhcCchHHHHH
Confidence 3446677888999999999999999999999999999999999888877 9999999999999999999
Q ss_pred HHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHH
Q psy17912 142 KIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVA 221 (779)
Q Consensus 142 ~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 221 (779)
++.+..|.+|||+|.+++|..++|++++-+|.||||||.+|+.|++.|+..++....+++|..||++||++||.|++.++
T Consensus 237 airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~ea 316 (731)
T KOG0339|consen 237 AIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEA 316 (731)
T ss_pred HHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred HHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHh
Q psy17912 222 NDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIG 301 (779)
Q Consensus 222 ~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~ 301 (779)
++|++.+++++++++||.+..++...+..++.||||||++|++++..+..++.+++|||||||++|.++||+++++.|..
T Consensus 317 Kkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~ 396 (731)
T KOG0339|consen 317 KKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQ 396 (731)
T ss_pred HHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEecccc-chhHHHHHHHHHhccCCCCcEEE
Q psy17912 302 QIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEH-EKDYKLQGLLSQIGSERTSKTII 380 (779)
Q Consensus 302 ~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~-~k~~~L~~ll~~i~~~~~~kvLV 380 (779)
+++|++|+|+||||++..++.+++.++.+|+.+..+... ..+..|.|.+.++... .|..+|..-|-... ..+++||
T Consensus 397 hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vg-ean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~--S~gkvli 473 (731)
T KOG0339|consen 397 HIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVG-EANEDITQTVSVCPSEEKKLNWLLRHLVEFS--SEGKVLI 473 (731)
T ss_pred hcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehh-ccccchhheeeeccCcHHHHHHHHHHhhhhc--cCCcEEE
Confidence 999999999999999999999999999999999988766 5678899999988754 34444444443332 4579999
Q ss_pred EecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcC
Q psy17912 381 FVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYK 460 (779)
Q Consensus 381 F~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~ 460 (779)
|+..+..+++++..|+..++.+..+||+|.+++|.+++..|+.+...|||||+++++|+|++.+. .||+||
T Consensus 474 fVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ik---------TVvnyD 544 (731)
T KOG0339|consen 474 FVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIK---------TVVNYD 544 (731)
T ss_pred EEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccc---------eeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999988 999999
Q ss_pred CCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHH
Q psy17912 461 ESQQKRDRVLNEFRIGRASILVSHYNKSQQERDR 494 (779)
Q Consensus 461 ~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~ 494 (779)
...+++.+.||+||+||+|..|+.|++-++...+
T Consensus 545 ~ardIdththrigrtgRag~kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 545 FARDIDTHTHRIGRTGRAGEKGVAYTLVTEKDAE 578 (731)
T ss_pred ccchhHHHHHHhhhcccccccceeeEEechhhHH
Confidence 9999999999999999999999999887655433
No 7
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.7e-59 Score=539.66 Aligned_cols=403 Identities=30% Similarity=0.463 Sum_probs=356.1
Q ss_pred ccccccccCCCCCccCC-CCChHHHHHhhhcCCeEEecccccccccCCCCCCCCCCCCCCcCCCCCHHHHHHHHHcCCCC
Q psy17912 72 SMEQINKNLYTPNHLTV-SRSQGEVESYLNHHDVTVKGRYYLLRLESRPGKCVPRPIQHFEECNFPPYIMKKIYEMGFQA 150 (779)
Q Consensus 72 ~~~~~~~~~~~~~~~~~-~~~~~e~~~~~~~~~i~~~g~~~~~~~~~~~~~~~p~pi~~f~~~~l~~~l~~~l~~~g~~~ 150 (779)
..++++++||..++... .++..+++.+++..++.+.|.. .|+|+.+|++++|++.+++.|.+.||..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~------------~p~pi~~f~~~~l~~~l~~~L~~~g~~~ 143 (518)
T PLN00206 76 RLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEA------------VPPPILSFSSCGLPPKLLLNLETAGYEF 143 (518)
T ss_pred hcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCC------------CCchhcCHHhCCCCHHHHHHHHHcCCCC
Confidence 34678899999877664 4889999999999999988876 8999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCC--CCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 151 PTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRP--LRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 151 p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~--~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
|||+|.++||.+++|+|+++++|||||||++|++|++.++..... .....++++|||+||++||.|+.+.++.+....
T Consensus 144 ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~ 223 (518)
T PLN00206 144 PTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL 223 (518)
T ss_pred CCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999998865321 122357899999999999999999999999888
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCc
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 308 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~q 308 (779)
++++..++||.....+...+..+++|+|+||++|.+++......++++++|||||||+|++++|...+..++..+ ++.|
T Consensus 224 ~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~~i~~~l-~~~q 302 (518)
T PLN00206 224 PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVMQIFQAL-SQPQ 302 (518)
T ss_pred CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHHHHHHhC-CCCc
Confidence 999999999998888888888889999999999999998888889999999999999999999999999999887 5789
Q ss_pred eEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHH
Q psy17912 309 VLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKA 388 (779)
Q Consensus 309 illlSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~a 388 (779)
++++|||+|+.++.++..++.++..+.++... .....+.+.+..+....+...+..++.... ....++||||+++..+
T Consensus 303 ~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~-~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a 380 (518)
T PLN00206 303 VLLFSATVSPEVEKFASSLAKDIILISIGNPN-RPNKAVKQLAIWVETKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGA 380 (518)
T ss_pred EEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCC-CCCcceeEEEEeccchhHHHHHHHHHHhhc-ccCCCEEEEcCCchhH
Confidence 99999999999999999999998888876654 334556777777777777778888776542 2346899999999999
Q ss_pred HHHHHHHHh-CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHH
Q psy17912 389 DDITRSVRN-KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRD 467 (779)
Q Consensus 389 e~L~~~L~~-~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~ 467 (779)
+.|++.|.. .++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+++ +||+|++|.++.+
T Consensus 381 ~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~---------~VI~~d~P~s~~~ 451 (518)
T PLN00206 381 DLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVR---------QVIIFDMPNTIKE 451 (518)
T ss_pred HHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCC---------EEEEeCCCCCHHH
Confidence 999999975 589999999999999999999999999999999999999999999999 9999999999999
Q ss_pred HHHHhccCCCCCCeEEEEEcChHHHHHHHHh
Q psy17912 468 RVLNEFRIGRASILVSHYNKSQQERDRVLNE 498 (779)
Q Consensus 468 yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e 498 (779)
|+||+||+||.|..|.+++....+....+.+
T Consensus 452 yihRiGRaGR~g~~G~ai~f~~~~~~~~~~~ 482 (518)
T PLN00206 452 YIHQIGRASRMGEKGTAIVFVNEEDRNLFPE 482 (518)
T ss_pred HHHhccccccCCCCeEEEEEEchhHHHHHHH
Confidence 9999999999998887766655554444444
No 8
>KOG0341|consensus
Probab=100.00 E-value=4.7e-61 Score=492.83 Aligned_cols=389 Identities=36% Similarity=0.558 Sum_probs=351.8
Q ss_pred cccCCCCCccCCCCChHHHHHhhhcCCeEEecccccccccCCCCCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHH
Q psy17912 77 NKNLYTPNHLTVSRSQGEVESYLNHHDVTVKGRYYLLRLESRPGKCVPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQA 156 (779)
Q Consensus 77 ~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~~g~~~~~~~~~~~~~~~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~ 156 (779)
-+..|.|+..+..+++++.+..+++..+.++|+. .|+|+.+|.++++|..+++.+++.|+..|||+|.
T Consensus 131 i~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~------------ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQv 198 (610)
T KOG0341|consen 131 IKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDD------------IPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQV 198 (610)
T ss_pred chhccCCcHHHHHhhHHHHHHHHHhheEEeeCCC------------CCCchhhhhhccCCHHHHHHHHhcCCCCCCceee
Confidence 3456777777888899999999999999999988 9999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccC---CCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC-----
Q psy17912 157 QGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQR---PLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT----- 228 (779)
Q Consensus 157 ~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~---~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~----- 228 (779)
+.+|.+++|+|+|..|-||||||++|.+|++.....+. +...+.||..|||||+|+||.|+++.+..++..+
T Consensus 199 QGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~ 278 (610)
T KOG0341|consen 199 QGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGY 278 (610)
T ss_pred cCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999988776652 3445789999999999999999999888875433
Q ss_pred -CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCC
Q psy17912 229 -ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDR 307 (779)
Q Consensus 229 -~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~ 307 (779)
.++...+.||.+..++...++.+.+|+|+||++|.++|....++|.-+.|+++||||+|.++||+..++.|+.++...+
T Consensus 279 P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFEddir~iF~~FK~QR 358 (610)
T KOG0341|consen 279 PELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFEDDIRTIFSFFKGQR 358 (610)
T ss_pred hhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccchhhHHHHHHHHhhhh
Confidence 4678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhH
Q psy17912 308 QVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRK 387 (779)
Q Consensus 308 qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ 387 (779)
|+++||||+|..++.+++..+..|+.++++... ..+.++.|.+.++....|.-+|.+.|. ....++||||..+.+
T Consensus 359 QTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAG-AAsldViQevEyVkqEaKiVylLeCLQ----KT~PpVLIFaEkK~D 433 (610)
T KOG0341|consen 359 QTLLFSATMPKKIQNFAKSALVKPVTVNVGRAG-AASLDVIQEVEYVKQEAKIVYLLECLQ----KTSPPVLIFAEKKAD 433 (610)
T ss_pred heeeeeccccHHHHHHHHhhcccceEEeccccc-ccchhHHHHHHHHHhhhhhhhHHHHhc----cCCCceEEEeccccC
Confidence 999999999999999999999999999999987 455677777777777665555544443 357899999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHH
Q psy17912 388 ADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRD 467 (779)
Q Consensus 388 ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~ 467 (779)
++.++++|--.|..++.|||+.++++|..+++.|+.|+-+|||||++++.|+|+|++. +|||||+|..++.
T Consensus 434 VD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iq---------HVINyDMP~eIEN 504 (610)
T KOG0341|consen 434 VDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQ---------HVINYDMPEEIEN 504 (610)
T ss_pred hHHHHHHHHHccceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccch---------hhccCCChHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred HHHHhccCCCCCCeE---EEEEcChHH
Q psy17912 468 RVLNEFRIGRASILV---SHYNKSQQE 491 (779)
Q Consensus 468 yiQR~GRaGR~g~~~---~~~~~~~~e 491 (779)
|+||+||+||.|..| +|++.+..+
T Consensus 505 YVHRIGRTGRsg~~GiATTfINK~~~e 531 (610)
T KOG0341|consen 505 YVHRIGRTGRSGKTGIATTFINKNQEE 531 (610)
T ss_pred HHHHhcccCCCCCcceeeeeecccchH
Confidence 999999999988655 555555443
No 9
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.7e-58 Score=526.43 Aligned_cols=347 Identities=35% Similarity=0.538 Sum_probs=318.7
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE
Q psy17912 128 QHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL 207 (779)
Q Consensus 128 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil 207 (779)
.+|.++++++.+++++.+.||..|||+|.++||.++.|+|+++.|+||||||++|++|++..+..... ....+ +||+
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~--~~~~~-aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE--RKYVS-ALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc--cCCCc-eEEE
Confidence 78999999999999999999999999999999999999999999999999999999999999774311 11112 9999
Q ss_pred ccCHHHHHHHHHHHHHhcccC-CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchh
Q psy17912 208 APTRELAQQIETVANDFGSAT-ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADR 286 (779)
Q Consensus 208 ~Ptr~La~Q~~~~~~~~~~~~-~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~ 286 (779)
+|||+||.|+++.+..++... ++++.+++||.+...+...+..+++|+|+||++|++++..+.+.++.+.++|+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999988 7999999999999999999988899999999999999999999999999999999999
Q ss_pred hhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCC-CCccceEEEEEeccccc-hhHHHH
Q psy17912 287 MLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNP-TANHNIVQIVDVCQEHE-KDYKLQ 364 (779)
Q Consensus 287 l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~-~~~~~i~~~~~~~~~~~-k~~~L~ 364 (779)
|+++||...+..|+..+++++|+++||||+|..+..++..++.+|..+.+..... .....+.|.+..+.... |...|.
T Consensus 186 mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~ 265 (513)
T COG0513 186 MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLL 265 (513)
T ss_pred hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999888874332 25678888888888765 888888
Q ss_pred HHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcc
Q psy17912 365 GLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVL 444 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v 444 (779)
.++... ...++||||+|+..++.|+..|...|+.+..+||+|++++|.++++.|++|+.+|||||++++||||+|.+
T Consensus 266 ~ll~~~---~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v 342 (513)
T COG0513 266 KLLKDE---DEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDV 342 (513)
T ss_pred HHHhcC---CCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCcccc
Confidence 887753 34579999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcCh
Q psy17912 445 NEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQ 489 (779)
Q Consensus 445 ~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~ 489 (779)
+ +|||||.|.++++|+||+||+||+|..|..+....
T Consensus 343 ~---------~VinyD~p~~~e~yvHRiGRTgRaG~~G~ai~fv~ 378 (513)
T COG0513 343 S---------HVINYDLPLDPEDYVHRIGRTGRAGRKGVAISFVT 378 (513)
T ss_pred c---------eeEEccCCCCHHHheeccCccccCCCCCeEEEEeC
Confidence 8 99999999999999999999999998887776554
No 10
>KOG0334|consensus
Probab=100.00 E-value=2.4e-58 Score=528.46 Aligned_cols=407 Identities=39% Similarity=0.642 Sum_probs=383.0
Q ss_pred CCCCCCCCCCCcccccccccCCCCCccCCCCChHHHHHhhhcCC-eEEecccccccccCCCCCCCCCCCCCCcCCCCCHH
Q psy17912 60 NSNLRTPNWNSMSMEQINKNLYTPNHLTVSRSQGEVESYLNHHD-VTVKGRYYLLRLESRPGKCVPRPIQHFEECNFPPY 138 (779)
Q Consensus 60 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-i~~~g~~~~~~~~~~~~~~~p~pi~~f~~~~l~~~ 138 (779)
+..+...+++..+.+||+++||.+.+++..++..+++.++.... +.+.|.. .|+|+.+|.+.++...
T Consensus 308 ~~~~~~~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~------------~pkpv~sW~q~gl~~~ 375 (997)
T KOG0334|consen 308 KKNLIQVDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKE------------CPKPVTSWTQCGLSSK 375 (997)
T ss_pred ccceeecccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCC------------CCcccchHhhCCchHH
Confidence 44666778888999999999999999999999999999999887 8898888 9999999999999999
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHH
Q psy17912 139 IMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIE 218 (779)
Q Consensus 139 l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~ 218 (779)
++..++++||.+|+|+|.+|||+|++|+|+|.+|.||||||++|++|++.|+..+++...+.||.+||++||++|+.|+.
T Consensus 376 il~tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~ 455 (997)
T KOG0334|consen 376 ILETLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIH 455 (997)
T ss_pred HHHHHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC---cCCCCeeEEEEccchhhhcCCchHH
Q psy17912 219 TVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT---INLHRTSYLVLDEADRMLDMGFEPQ 295 (779)
Q Consensus 219 ~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~---~~l~~i~~lViDEaH~l~~~~f~~~ 295 (779)
++++.|+..+++++++++|+....++...+.+++.|+||||+++++++..+. .++.++.++|+||||+|++++|.++
T Consensus 456 r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmgfePq 535 (997)
T KOG0334|consen 456 REVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMGFEPQ 535 (997)
T ss_pred HHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheeccCcc
Confidence 9999999999999999999999999999999999999999999999987654 4677788999999999999999999
Q ss_pred HHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEecc-ccchhHHHHHHHHHhccCC
Q psy17912 296 IRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQ-EHEKDYKLQGLLSQIGSER 374 (779)
Q Consensus 296 l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~i~~~~ 374 (779)
+..|+..+++++|++++|||+|..++.++...+..|+.+.++... .+...+.+.+.++. +.+|...|..||.....
T Consensus 536 ~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~s-vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e-- 612 (997)
T KOG0334|consen 536 ITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRS-VVCKEVTQVVRVCAIENEKFLKLLELLGERYE-- 612 (997)
T ss_pred cchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccce-eEeccceEEEEEecCchHHHHHHHHHHHHHhh--
Confidence 999999999999999999999999999999999999998888544 77888999999998 88999999999998653
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccccccee
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASI 454 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~ 454 (779)
..++||||.+...|+.|.+.|.+.|+.+..+||+.++.+|..++++|+++.+.+||||+++++|+|++.+.
T Consensus 613 ~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~--------- 683 (997)
T KOG0334|consen 613 DGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELI--------- 683 (997)
T ss_pred cCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccce---------
Confidence 78999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred EEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChH
Q psy17912 455 LVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQ 490 (779)
Q Consensus 455 ~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~ 490 (779)
+||+|+.|+.+++|+||.||+||+|..+++|+.-.+
T Consensus 684 Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtFi~p 719 (997)
T KOG0334|consen 684 LVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTFITP 719 (997)
T ss_pred EEEEcccchhHHHHHHHhcccccCCccceeEEEeCh
Confidence 999999999999999999999999988877776555
No 11
>KOG0328|consensus
Probab=100.00 E-value=1.8e-57 Score=450.31 Aligned_cols=359 Identities=29% Similarity=0.466 Sum_probs=330.1
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCC
Q psy17912 123 VPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGP 202 (779)
Q Consensus 123 ~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 202 (779)
..+++.+|++++|.+++++.++..||++|+.+|+.|++.+++|+|+|+++..|+|||.+|.+.+++.+.-. ....
T Consensus 22 ~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~t 96 (400)
T KOG0328|consen 22 KVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRET 96 (400)
T ss_pred CcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----ccee
Confidence 45678899999999999999999999999999999999999999999999999999999988887655432 1235
Q ss_pred EEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEc
Q psy17912 203 IVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLD 282 (779)
Q Consensus 203 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViD 282 (779)
++||++|||+||.|+.+.+..++...++.+..+.||.+..++.+.+..+.+++.+||+++++++....+.-+.+.++|+|
T Consensus 97 Q~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLD 176 (400)
T KOG0328|consen 97 QALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLD 176 (400)
T ss_pred eEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEecccc-chhH
Q psy17912 283 EADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEH-EKDY 361 (779)
Q Consensus 283 EaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~-~k~~ 361 (779)
|||.|++.+|..++-.+++.++|+.|++++|||+|.++.+...+|+.+|+.+.+...+.+ .+.+++++..++.. -|.+
T Consensus 177 EaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdelt-lEgIKqf~v~ve~EewKfd 255 (400)
T KOG0328|consen 177 EADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELT-LEGIKQFFVAVEKEEWKFD 255 (400)
T ss_pred cHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCc-hhhhhhheeeechhhhhHh
Confidence 999999999999999999999999999999999999999999999999999999887744 45566666655544 4888
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERD 441 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDi 441 (779)
.|.++...+ .-.+++|||+|++.++.|.+.++..++.|.++||+|+++||++++++|++|+.+|||+|++.++|+|+
T Consensus 256 tLcdLYd~L---tItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTDVwaRGiDv 332 (400)
T KOG0328|consen 256 TLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTDVWARGIDV 332 (400)
T ss_pred HHHHHhhhh---ehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcCCceEEEEechhhccCCc
Confidence 888888766 35679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhh
Q psy17912 442 RVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 499 (779)
Q Consensus 442 p~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~ 499 (779)
|.|+ +|||||.|.+.+.|+||+||.||.|..|++++.-..+..+.+.++
T Consensus 333 ~qVs---------lviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~d~~~lrdi 381 (400)
T KOG0328|consen 333 QQVS---------LVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDLRILRDI 381 (400)
T ss_pred ceeE---------EEEecCCCccHHHHhhhhccccccCCcceEEEEecHHHHHHHHHH
Confidence 9998 999999999999999999999999999999988877777776665
No 12
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.2e-55 Score=497.76 Aligned_cols=360 Identities=31% Similarity=0.439 Sum_probs=316.6
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCC--CCCCCCE
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPL--RSGEGPI 203 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~--~~~~~~~ 203 (779)
+-.+|++++|++.+++.+.++||..|+|+|+++||.+++|+|++++||||||||++|++|++..+...+.. ....+++
T Consensus 6 ~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~ 85 (423)
T PRK04837 6 TEQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPR 85 (423)
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCce
Confidence 34689999999999999999999999999999999999999999999999999999999999988765432 1234689
Q ss_pred EEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEcc
Q psy17912 204 VLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDE 283 (779)
Q Consensus 204 vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDE 283 (779)
+|||+||++||.|+.+.+..+....++++..++|+.....+...+..+++|+|+||++|++++..+.+.++++++|||||
T Consensus 86 ~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDE 165 (423)
T PRK04837 86 ALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDE 165 (423)
T ss_pred EEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEec
Confidence 99999999999999999999999999999999999888878778888899999999999999988888999999999999
Q ss_pred chhhhcCCchHHHHHHHhhcCC--CCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhH
Q psy17912 284 ADRMLDMGFEPQIRKIIGQIRP--DRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDY 361 (779)
Q Consensus 284 aH~l~~~~f~~~l~~il~~l~~--~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~ 361 (779)
||++++++|...+..++..++. ..+.+++|||++..+..++..++.++..+.+.... .....+.+.+.+....+|..
T Consensus 166 ad~l~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~-~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 166 ADRMFDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQ-KTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred HHHHhhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCC-cCCCceeEEEEeCCHHHHHH
Confidence 9999999999999999998874 56789999999999999999999888888775544 23345555555555556666
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERD 441 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDi 441 (779)
.+..++.. ....++||||+++..|+.+++.|...++.+..+||++++++|..+++.|++|+++|||||+++++|||+
T Consensus 245 ~l~~ll~~---~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 245 LLQTLIEE---EWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHh---cCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCCCc
Confidence 66666653 346789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHh
Q psy17912 442 RVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 498 (779)
Q Consensus 442 p~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e 498 (779)
|+++ +||+|++|.+..+|+||+||+||.|..|.+++...++....+..
T Consensus 322 p~v~---------~VI~~d~P~s~~~yiqR~GR~gR~G~~G~ai~~~~~~~~~~~~~ 369 (423)
T PRK04837 322 PAVT---------HVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPA 369 (423)
T ss_pred cccC---------EEEEeCCCCchhheEeccccccCCCCCeeEEEEeCHHHHHHHHH
Confidence 9998 99999999999999999999999999887777766554444433
No 13
>KOG0335|consensus
Probab=100.00 E-value=1.4e-56 Score=484.26 Aligned_cols=360 Identities=40% Similarity=0.609 Sum_probs=330.8
Q ss_pred CCCCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCC
Q psy17912 118 RPGKCVPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLR 197 (779)
Q Consensus 118 ~~~~~~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~ 197 (779)
..+...|.++..|.+..+++.++.+++..++..|||+|+.++|.+..|+++++||+||||||.+|++|++.++.......
T Consensus 64 ~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~ 143 (482)
T KOG0335|consen 64 VSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPED 143 (482)
T ss_pred ccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCccc
Confidence 35556999999999999999999999999999999999999999999999999999999999999999999998763311
Q ss_pred ----C-CCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcC
Q psy17912 198 ----S-GEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTIN 272 (779)
Q Consensus 198 ----~-~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~ 272 (779)
. ...|.+||++|||+||.|++.+++++....+++++..+|+.+...+.+.+..+|+|+|||||+|.+++..+.+.
T Consensus 144 ~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~ 223 (482)
T KOG0335|consen 144 RGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKIS 223 (482)
T ss_pred CcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceee
Confidence 1 13599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeeEEEEccchhhhc-CCchHHHHHHHhhcC----CCCceEEeeccccHHHHHHHHHhccC-cEEEecCCCCCCCccc
Q psy17912 273 LHRTSYLVLDEADRMLD-MGFEPQIRKIIGQIR----PDRQVLMWSATWPKEVQKLAEDFLVD-YVQLNIGSLNPTANHN 346 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~-~~f~~~l~~il~~l~----~~~qilllSAT~~~~v~~l~~~~l~~-~~~i~i~~~~~~~~~~ 346 (779)
|+.+.++|+||||+|+| ++|.+.+.+|+.... ..+|.++||||+|.+++.++..++.+ ++.+.++... ....+
T Consensus 224 l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg-~~~~n 302 (482)
T KOG0335|consen 224 LDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVG-STSEN 302 (482)
T ss_pred hhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeec-ccccc
Confidence 99999999999999999 999999999998874 37899999999999999999999987 8888888877 56789
Q ss_pred eEEEEEeccccchhHHHHHHHHHhccC-CC-----CcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHH
Q psy17912 347 IVQIVDVCQEHEKDYKLQGLLSQIGSE-RT-----SKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNE 420 (779)
Q Consensus 347 i~~~~~~~~~~~k~~~L~~ll~~i~~~-~~-----~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~ 420 (779)
+.|.+.++.+.+|..+|.+++...... .. .+++|||.+++.|+.|+..|...++++..+||+.++.+|.++++.
T Consensus 303 i~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~ 382 (482)
T KOG0335|consen 303 ITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALND 382 (482)
T ss_pred ceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHH
Confidence 999999999999999999999865422 12 379999999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEc
Q psy17912 421 FRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNK 487 (779)
Q Consensus 421 F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~ 487 (779)
|++|.+.|||||++++||||+|+|. +||+||+|.+..+|+||+||+||.|..|.++..
T Consensus 383 Fr~g~~pvlVaT~VaaRGlDi~~V~---------hVInyDmP~d~d~YvHRIGRTGR~Gn~G~atsf 440 (482)
T KOG0335|consen 383 FRNGKAPVLVATNVAARGLDIPNVK---------HVINYDMPADIDDYVHRIGRTGRVGNGGRATSF 440 (482)
T ss_pred hhcCCcceEEEehhhhcCCCCCCCc---------eeEEeecCcchhhHHHhccccccCCCCceeEEE
Confidence 9999999999999999999999998 999999999999999999999999977754443
No 14
>KOG0338|consensus
Probab=100.00 E-value=7.1e-57 Score=476.66 Aligned_cols=358 Identities=30% Similarity=0.405 Sum_probs=323.0
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE
Q psy17912 128 QHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL 207 (779)
Q Consensus 128 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil 207 (779)
.+|.+++|+..+++++..+||..|||+|..+||..+-|+|++.||.||||||.+|++|++..+...|.. ....+||||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLVL 258 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLVL 258 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEEE
Confidence 489999999999999999999999999999999999999999999999999999999999999886543 235689999
Q ss_pred ccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcC-CcCCCCeeEEEEccchh
Q psy17912 208 APTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQG-TINLHRTSYLVLDEADR 286 (779)
Q Consensus 208 ~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~-~~~l~~i~~lViDEaH~ 286 (779)
+|||+|+.|++++.++++....+.++.+.||.+...|...++..+||+|+|||+|.+++.+. .++++++.++|+||||+
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 99999999999999999999999999999999999999999999999999999999999764 47899999999999999
Q ss_pred hhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEec---cccchhHHH
Q psy17912 287 MLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVC---QEHEKDYKL 363 (779)
Q Consensus 287 l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~---~~~~k~~~L 363 (779)
|++.+|..++..|+..+++++|+++||||++.++..++.--+.+|+.+.+.+..... ..+.|.+..+ .+.++...+
T Consensus 339 MLeegFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a-~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 339 MLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTA-PKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred HHHHHHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccc-hhhhHHHheeccccccccHHHH
Confidence 999999999999999999999999999999999999999999999999998766433 3344433322 245677778
Q ss_pred HHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCc
Q psy17912 364 QGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRV 443 (779)
Q Consensus 364 ~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~ 443 (779)
..++.... ...+|||+.|++.|..+.-.|--.|+.++-+||.++|.+|-+.++.|+.++++|||||+++++|||++.
T Consensus 418 ~~l~~rtf---~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 418 ASLITRTF---QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHHhc---ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccc
Confidence 88887664 567999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhh
Q psy17912 444 LNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR 500 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~ 500 (779)
|. .||||.+|.+...|+||.||+.|+|..|..++...+....++.+..
T Consensus 495 V~---------tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVtlvgE~dRkllK~ii 542 (691)
T KOG0338|consen 495 VQ---------TVINYAMPKTIEHYLHRVGRTARAGRAGRSVTLVGESDRKLLKEII 542 (691)
T ss_pred ee---------EEEeccCchhHHHHHHHhhhhhhcccCcceEEEeccccHHHHHHHH
Confidence 88 9999999999999999999988888888777766655555666643
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=4.9e-55 Score=496.48 Aligned_cols=356 Identities=33% Similarity=0.537 Sum_probs=312.3
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCC-CCCCCEEEEE
Q psy17912 129 HFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLR-SGEGPIVLVL 207 (779)
Q Consensus 129 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~-~~~~~~vLil 207 (779)
+|++++|++.+++.|.++||..|||+|.++||.+++++|+|+++|||||||++|++|++..+....... ....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 688999999999999999999999999999999999999999999999999999999999987643221 1234589999
Q ss_pred ccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhh
Q psy17912 208 APTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRM 287 (779)
Q Consensus 208 ~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l 287 (779)
+||++||.|+.+.++.+....++++..++|+.+...+...+..+++|+|+||++|++++....+.++++++|||||||++
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999988899999999999988887788888999999999999999888888999999999999999
Q ss_pred hcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHH
Q psy17912 288 LDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLL 367 (779)
Q Consensus 288 ~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 367 (779)
++++|...+..++..+++..|++++|||+++++..++..++.++..+.+.... .....+.+.+..+....+...+..++
T Consensus 162 l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~~~l~~l~ 240 (456)
T PRK10590 162 LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRN-TASEQVTQHVHFVDKKRKRELLSQMI 240 (456)
T ss_pred hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEeccc-ccccceeEEEEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877765443 33445666666666655555555554
Q ss_pred HHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccc
Q psy17912 368 SQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEF 447 (779)
Q Consensus 368 ~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~ 447 (779)
.. ....++||||+++..++.|++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 241 ~~---~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~-- 315 (456)
T PRK10590 241 GK---GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELP-- 315 (456)
T ss_pred Hc---CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCC--
Confidence 42 3457899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHH
Q psy17912 448 RIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLN 497 (779)
Q Consensus 448 ~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~ 497 (779)
+||+|++|.++.+|+||+||+||+|..+.+++....+....+.
T Consensus 316 -------~VI~~~~P~~~~~yvqR~GRaGR~g~~G~ai~l~~~~d~~~~~ 358 (456)
T PRK10590 316 -------HVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLR 358 (456)
T ss_pred -------EEEEeCCCCCHHHhhhhccccccCCCCeeEEEEecHHHHHHHH
Confidence 9999999999999999999999999877665544333333333
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=1.5e-54 Score=494.11 Aligned_cols=347 Identities=33% Similarity=0.507 Sum_probs=313.0
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE
Q psy17912 128 QHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL 207 (779)
Q Consensus 128 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil 207 (779)
.+|.+++|++.+.+.+.++||..|+|+|+++||.+++|+|++++||||||||++|++|++..+.... ..+++||+
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-----~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-----FRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-----CCceEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999885422 35689999
Q ss_pred ccCHHHHHHHHHHHHHhcccC-CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchh
Q psy17912 208 APTRELAQQIETVANDFGSAT-ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADR 286 (779)
Q Consensus 208 ~Ptr~La~Q~~~~~~~~~~~~-~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~ 286 (779)
+||++||.|+.+.++.++... ++++..++|+.+...+...+..+++|+|+||++|.+++.++.+.++++++|||||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999987654 7889999999999888888888899999999999999988888899999999999999
Q ss_pred hhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHH
Q psy17912 287 MLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGL 366 (779)
Q Consensus 287 l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 366 (779)
|++++|...+..++..+++..|++++|||+|+.+..++..++.++..+.+.... ....+.+.+..+....|...+..+
T Consensus 159 ~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~--~~~~i~~~~~~~~~~~k~~~l~~l 236 (460)
T PRK11776 159 MLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTH--DLPAIEQRFYEVSPDERLPALQRL 236 (460)
T ss_pred HhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCC--CCCCeeEEEEEeCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888776544 234466666666666677777777
Q ss_pred HHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccc
Q psy17912 367 LSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNE 446 (779)
Q Consensus 367 l~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~ 446 (779)
+... ...++||||++++.++.+++.|...++.+..+||+|++.+|+.+++.|++|+.+|||||+++++|||+|+++
T Consensus 237 l~~~---~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~- 312 (460)
T PRK11776 237 LLHH---QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALE- 312 (460)
T ss_pred HHhc---CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCC-
Confidence 7543 467899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHH
Q psy17912 447 FRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERD 493 (779)
Q Consensus 447 ~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~ 493 (779)
+||+|+.|.+..+|+||+||+||+|..+.++....++..
T Consensus 313 --------~VI~~d~p~~~~~yiqR~GRtGR~g~~G~ai~l~~~~e~ 351 (460)
T PRK11776 313 --------AVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEM 351 (460)
T ss_pred --------eEEEecCCCCHhHhhhhcccccCCCCcceEEEEEchhHH
Confidence 999999999999999999999999988877766544433
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.3e-54 Score=497.93 Aligned_cols=351 Identities=33% Similarity=0.484 Sum_probs=308.5
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCC--CCCCCCEEE
Q psy17912 128 QHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPL--RSGEGPIVL 205 (779)
Q Consensus 128 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~--~~~~~~~vL 205 (779)
.+|++++|++.+++.|.++||..|||+|.++||.+++|+|+++++|||||||++|++|++..+...+.. .....+++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 479999999999999999999999999999999999999999999999999999999999988754321 122357999
Q ss_pred EEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcC-CcCCCCeeEEEEccc
Q psy17912 206 VLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQG-TINLHRTSYLVLDEA 284 (779)
Q Consensus 206 il~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~-~~~l~~i~~lViDEa 284 (779)
||+||++||.|+++.+.+++...++++..++|+.....+...+..+++|+|+||++|++++... .+.+..+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999999999999999999888887788888999999999999998765 467889999999999
Q ss_pred hhhhcCCchHHHHHHHhhcCC--CCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHH
Q psy17912 285 DRMLDMGFEPQIRKIIGQIRP--DRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYK 362 (779)
Q Consensus 285 H~l~~~~f~~~l~~il~~l~~--~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~ 362 (779)
|+|++++|...+..++..++. ..|+++||||++..+..+...++.++..+.+.... .....+.+.+.......+...
T Consensus 169 h~lld~gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~k~~~ 247 (572)
T PRK04537 169 DRMFDLGFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETET-ITAARVRQRIYFPADEEKQTL 247 (572)
T ss_pred HHHhhcchHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccc-ccccceeEEEEecCHHHHHHH
Confidence 999999999999999998875 78999999999999999999999887766654433 223455666666665556655
Q ss_pred HHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccC
Q psy17912 363 LQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDR 442 (779)
Q Consensus 363 L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip 442 (779)
+..++.. ....++||||+++..++.|++.|.+.++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|
T Consensus 248 L~~ll~~---~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip 324 (572)
T PRK04537 248 LLGLLSR---SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLHID 324 (572)
T ss_pred HHHHHhc---ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCcc
Confidence 5555543 3567899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHH
Q psy17912 443 VLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQE 491 (779)
Q Consensus 443 ~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e 491 (779)
+++ +||+|+.|.++.+|+||+||+||.|..+.+++.....
T Consensus 325 ~V~---------~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~ 364 (572)
T PRK04537 325 GVK---------YVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACER 364 (572)
T ss_pred CCC---------EEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHH
Confidence 998 9999999999999999999999999887666654433
No 18
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=6.7e-54 Score=498.97 Aligned_cols=353 Identities=31% Similarity=0.493 Sum_probs=313.0
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE
Q psy17912 128 QHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL 207 (779)
Q Consensus 128 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil 207 (779)
.+|.+++|++.++++|.++||.+|+|+|.++||.+++++|+|++||||+|||++|++|++..+... ..++++|||
T Consensus 6 ~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LIL 80 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILVL 80 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999887542 246799999
Q ss_pred ccCHHHHHHHHHHHHHhcccC-CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchh
Q psy17912 208 APTRELAQQIETVANDFGSAT-ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADR 286 (779)
Q Consensus 208 ~Ptr~La~Q~~~~~~~~~~~~-~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~ 286 (779)
+||++||.|+++.+..+.... ++.+..++|+.+...+...+..+++|+|+||++|++++....+.++++++|||||||.
T Consensus 81 ~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ 160 (629)
T PRK11634 81 APTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADE 160 (629)
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHH
Confidence 999999999999999987654 7899999999988888888888899999999999999988888999999999999999
Q ss_pred hhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHH
Q psy17912 287 MLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGL 366 (779)
Q Consensus 287 l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 366 (779)
|++++|...+..++..+++..|+++||||+|+.+..+...++.++..+.+.... .....+.+.+..+....|...|..+
T Consensus 161 ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~-~~~~~i~q~~~~v~~~~k~~~L~~~ 239 (629)
T PRK11634 161 MLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSV-TTRPDISQSYWTVWGMRKNEALVRF 239 (629)
T ss_pred HhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCcc-ccCCceEEEEEEechhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999998888776544 2334566666666666676777776
Q ss_pred HHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccc
Q psy17912 367 LSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNE 446 (779)
Q Consensus 367 l~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~ 446 (779)
+.. ....++||||+|+..++.|++.|...++.+..+||+|++.+|+.+++.|++|+++|||||+++++|||+|.++
T Consensus 240 L~~---~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~- 315 (629)
T PRK11634 240 LEA---EDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERIS- 315 (629)
T ss_pred HHh---cCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCC-
Confidence 654 3457899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHh
Q psy17912 447 FRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 498 (779)
Q Consensus 447 ~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e 498 (779)
+||+|+.|.++++|+||+||+||+|..+.+++.........+..
T Consensus 316 --------~VI~~d~P~~~e~yvqRiGRtGRaGr~G~ai~~v~~~e~~~l~~ 359 (629)
T PRK11634 316 --------LVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRN 359 (629)
T ss_pred --------EEEEeCCCCCHHHHHHHhccccCCCCcceEEEEechHHHHHHHH
Confidence 99999999999999999999999998776555444333334433
No 19
>KOG0340|consensus
Probab=100.00 E-value=7.6e-55 Score=444.59 Aligned_cols=350 Identities=28% Similarity=0.356 Sum_probs=316.0
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEE
Q psy17912 127 IQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLV 206 (779)
Q Consensus 127 i~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLi 206 (779)
...|+.+||++++.+.+..+|+.+|||+|+.+||.|+.|+|+|.+|.||||||++|.+|+++.+...+ .+-.++|
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEEE
Confidence 45689999999999999999999999999999999999999999999999999999999999998864 4678999
Q ss_pred EccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC----cCCCCeeEEEEc
Q psy17912 207 LAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT----INLHRTSYLVLD 282 (779)
Q Consensus 207 l~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~----~~l~~i~~lViD 282 (779)
++||++||.|+.+.|..+++..++++.+++||++.-.+...+...++|+|+|||++.+++..+. ..++++.++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 9999999999999999999999999999999999988888999999999999999999997752 358899999999
Q ss_pred cchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEec-CCCCCCCccceEEEEEeccccchhH
Q psy17912 283 EADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNI-GSLNPTANHNIVQIVDVCQEHEKDY 361 (779)
Q Consensus 283 EaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i-~~~~~~~~~~i~~~~~~~~~~~k~~ 361 (779)
|||++++.+|...+..++..+++.+|.++||||+++.+..+...-...+..... ...+.+....+.+.+..++...+..
T Consensus 161 EADrvL~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkda 240 (442)
T KOG0340|consen 161 EADRVLAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDA 240 (442)
T ss_pred chhhhhccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHH
Confidence 999999999999999999999999999999999998877766544444222222 2234456677888888999999999
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERD 441 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDi 441 (779)
+|..+|.....+..+.++||+++..+|+.|+..|+..++.+..+|+.|++.+|...+..|+++..+|||||+++++|+|+
T Consensus 241 YLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDI 320 (442)
T KOG0340|consen 241 YLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDI 320 (442)
T ss_pred HHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCC
Confidence 99999999876678899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChH
Q psy17912 442 RVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQ 490 (779)
Q Consensus 442 p~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~ 490 (779)
|.|. +|+||+.|.++.+|+||.||+.|+|..|..+....+
T Consensus 321 P~V~---------LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~ 360 (442)
T KOG0340|consen 321 PTVE---------LVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQ 360 (442)
T ss_pred Ccee---------EEEecCCCCCHHHHHHhhcchhcccCCcceEEEech
Confidence 9998 999999999999999999988888877755554443
No 20
>KOG0326|consensus
Probab=100.00 E-value=1.3e-55 Score=443.62 Aligned_cols=346 Identities=27% Similarity=0.463 Sum_probs=323.9
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE
Q psy17912 128 QHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL 207 (779)
Q Consensus 128 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil 207 (779)
..|+++.|..+++..+.+.||++|+|+|.++||.++.|+|+++-|..|+|||.+|++|++..+... ...-.++|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 568899999999999999999999999999999999999999999999999999999999988653 235579999
Q ss_pred ccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhh
Q psy17912 208 APTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRM 287 (779)
Q Consensus 208 ~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l 287 (779)
+|||+||.|+.+.++++++.+++.+...+||++..++.-.+....+++|+||++++++..++.-.++++.++|+||||.+
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh
Confidence 99999999999999999999999999999999999998888889999999999999999998889999999999999999
Q ss_pred hcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHH
Q psy17912 288 LDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLL 367 (779)
Q Consensus 288 ~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 367 (779)
++.+|.+.+..++..+++++|++++|||+|-.+..+..+++.+|..+..-.. .....+.|++.++.+..|...|..|+
T Consensus 240 Ls~~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~e--Ltl~GvtQyYafV~e~qKvhCLntLf 317 (459)
T KOG0326|consen 240 LSVDFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEE--LTLKGVTQYYAFVEERQKVHCLNTLF 317 (459)
T ss_pred hchhhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhh--hhhcchhhheeeechhhhhhhHHHHH
Confidence 9999999999999999999999999999999999999999999999887543 34567899999999999999999999
Q ss_pred HHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccc
Q psy17912 368 SQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEF 447 (779)
Q Consensus 368 ~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~ 447 (779)
..+. -.+.||||||...++.||..+.+.|+++.++|+.|-+++|.+++.+|++|.++.||||+.+.||||++.++
T Consensus 318 skLq---INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavN-- 392 (459)
T KOG0326|consen 318 SKLQ---INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVN-- 392 (459)
T ss_pred HHhc---ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhcccccceee--
Confidence 8873 56799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHH
Q psy17912 448 RIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQER 492 (779)
Q Consensus 448 ~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~ 492 (779)
+||+||.|.+.+.|.||+||+||.|..|.+++.-..|.
T Consensus 393 -------vVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLityed 430 (459)
T KOG0326|consen 393 -------VVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYED 430 (459)
T ss_pred -------EEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehhh
Confidence 99999999999999999999999998887777654443
No 21
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=7.1e-53 Score=477.24 Aligned_cols=356 Identities=28% Similarity=0.439 Sum_probs=310.6
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc
Q psy17912 129 HFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA 208 (779)
Q Consensus 129 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~ 208 (779)
+|+++++++.+++.+.++||.+|+++|.++++.+++|+|+++++|||+|||++|++|++.++...+. .....+++||++
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-RKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCceEEEEC
Confidence 6899999999999999999999999999999999999999999999999999999999999876432 223457999999
Q ss_pred cCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhh
Q psy17912 209 PTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRML 288 (779)
Q Consensus 209 Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~ 288 (779)
||++||.|+.+.+..++...++.+..++|+.....+...+..+++|+|+||++|++++..+.+.+.++++|||||||+|+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999999999999999998888877777889999999999999998888889999999999999999
Q ss_pred cCCchHHHHHHHhhcCCCCceEEeeccccH-HHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccc-cchhHHHHHH
Q psy17912 289 DMGFEPQIRKIIGQIRPDRQVLMWSATWPK-EVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQE-HEKDYKLQGL 366 (779)
Q Consensus 289 ~~~f~~~l~~il~~l~~~~qilllSAT~~~-~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~l 366 (779)
+++|...+..+...++...|+++||||++. .+..+...++.+++.+...... .....+.+.+..... ..+...|..+
T Consensus 161 ~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~~k~~~l~~l 239 (434)
T PRK11192 161 DMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSR-RERKKIHQWYYRADDLEHKTALLCHL 239 (434)
T ss_pred CCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCc-ccccCceEEEEEeCCHHHHHHHHHHH
Confidence 999999999999998888999999999985 5778888888888887765543 233455555554443 3344444444
Q ss_pred HHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccc
Q psy17912 367 LSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNE 446 (779)
Q Consensus 367 l~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~ 446 (779)
+. .....++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+++|||||+++++|||+|+++
T Consensus 240 ~~---~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~- 315 (434)
T PRK11192 240 LK---QPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVS- 315 (434)
T ss_pred Hh---cCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCC-
Confidence 43 23568999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHh
Q psy17912 447 FRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 498 (779)
Q Consensus 447 ~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e 498 (779)
+||+|++|.+...|+||+||+||+|..+.++..........+.+
T Consensus 316 --------~VI~~d~p~s~~~yiqr~GR~gR~g~~g~ai~l~~~~d~~~~~~ 359 (434)
T PRK11192 316 --------HVINFDMPRSADTYLHRIGRTGRAGRKGTAISLVEAHDHLLLGK 359 (434)
T ss_pred --------EEEEECCCCCHHHHhhcccccccCCCCceEEEEecHHHHHHHHH
Confidence 99999999999999999999999998887666655554444444
No 22
>KOG0342|consensus
Probab=100.00 E-value=1.6e-53 Score=452.04 Aligned_cols=360 Identities=30% Similarity=0.374 Sum_probs=318.1
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEE
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVL 205 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vL 205 (779)
+...|++..|++...+++..+||+.+|++|+..++.++.|+|+++.|.||+|||++|++|+++++.+.+.... ++-.+|
T Consensus 80 ~~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r-~~~~vl 158 (543)
T KOG0342|consen 80 TTFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPR-NGTGVL 158 (543)
T ss_pred hhhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCC-CCeeEE
Confidence 3456888899999999999999999999999999999999999999999999999999999999988765433 677899
Q ss_pred EEccCHHHHHHHHHHHHHhcccC-CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC-cCCCCeeEEEEcc
Q psy17912 206 VLAPTRELAQQIETVANDFGSAT-ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT-INLHRTSYLVLDE 283 (779)
Q Consensus 206 il~Ptr~La~Q~~~~~~~~~~~~-~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~-~~l~~i~~lViDE 283 (779)
||+|||+||.|++.+++++.... ++.+..+.||+....+.+.+.++++|+|+|||+|++++.+.. +..+.++++|+||
T Consensus 159 Ii~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDE 238 (543)
T KOG0342|consen 159 IICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDE 238 (543)
T ss_pred EecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeec
Confidence 99999999999999999998887 899999999999998888888899999999999999998754 4566778999999
Q ss_pred chhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccC-cEEEecCCCC-CCCccceEEEEEeccccchhH
Q psy17912 284 ADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVD-YVQLNIGSLN-PTANHNIVQIVDVCQEHEKDY 361 (779)
Q Consensus 284 aH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~-~~~i~i~~~~-~~~~~~i~~~~~~~~~~~k~~ 361 (779)
||++++.+|+..+..|+..++..+|.++||||.|++|++++...+.. ++.+...... ....+.+.|-+.+++...+..
T Consensus 239 ADrlLd~GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ 318 (543)
T KOG0342|consen 239 ADRLLDIGFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRFS 318 (543)
T ss_pred chhhhhcccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchHH
Confidence 99999999999999999999999999999999999999999887764 7777665544 334556677677777766667
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERD 441 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDi 441 (779)
.+..++++.. ...++||||+|...+..+++.|....++|..|||+++|..|..+...|+..+.-|||||++++||+|+
T Consensus 319 ll~~~LKk~~--~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~ 396 (543)
T KOG0342|consen 319 LLYTFLKKNI--KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDI 396 (543)
T ss_pred HHHHHHHHhc--CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCC
Confidence 7777777643 23899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHH
Q psy17912 442 RVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLN 497 (779)
Q Consensus 442 p~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~ 497 (779)
|+|+ +||.|++|.++++||||+||+||.|..|-.+..-.++....++
T Consensus 397 P~V~---------~VvQ~~~P~d~~~YIHRvGRTaR~gk~G~alL~l~p~El~Flr 443 (543)
T KOG0342|consen 397 PDVD---------WVVQYDPPSDPEQYIHRVGRTAREGKEGKALLLLAPWELGFLR 443 (543)
T ss_pred CCce---------EEEEeCCCCCHHHHHHHhccccccCCCceEEEEeChhHHHHHH
Confidence 9998 9999999999999999999999999877555543334433333
No 23
>KOG0345|consensus
Probab=100.00 E-value=5.2e-53 Score=444.92 Aligned_cols=343 Identities=29% Similarity=0.424 Sum_probs=303.1
Q ss_pred CCcCCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEE
Q psy17912 129 HFEECN--FPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLV 206 (779)
Q Consensus 129 ~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLi 206 (779)
+|++++ |.+++++++..+||...||+|..+||.+++++|+++.++||||||++|++|++..+............-+||
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred chhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 445444 569999999999999999999999999999999999999999999999999999985543332222356899
Q ss_pred EccCHHHHHHHHHHHHHhccc-CCceEEEEeCCCCChhhHHHhh-cCCeEEEeChHHHHHHHHcCC--cCCCCeeEEEEc
Q psy17912 207 LAPTRELAQQIETVANDFGSA-TATRVACVFGGAPKGPQVKALQ-TGAEIVIATPGRLIDYLEQGT--INLHRTSYLVLD 282 (779)
Q Consensus 207 l~Ptr~La~Q~~~~~~~~~~~-~~l~v~~~~gg~~~~~~~~~l~-~~~~IiV~Tpe~Ll~~l~~~~--~~l~~i~~lViD 282 (779)
|+|||+||.|+.+++..|... .++.+.++.||.+..++...+. ++++|+|+|||+|.+++.... +++++++++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999999999877 5888999999998888877765 568899999999999998744 456699999999
Q ss_pred cchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCC-CccceEEEEEeccccchhH
Q psy17912 283 EADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPT-ANHNIVQIVDVCQEHEKDY 361 (779)
Q Consensus 283 EaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~-~~~~i~~~~~~~~~~~k~~ 361 (779)
|||+++++||...+..|+..+|+.+++-+||||...++.+++...++||+.+.+...... .+..+...+.++....|..
T Consensus 165 EADrLldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~ 244 (567)
T KOG0345|consen 165 EADRLLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEKLS 244 (567)
T ss_pred chHhHhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998776532 3445666777788888888
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK--GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQE 439 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~--g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GI 439 (779)
.|.+++.. ...+++|||.+|...++..+..|... ..++..+||.|.+.+|..+++.|+...-.+|+||++++|||
T Consensus 245 ~lv~~L~~---~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 245 QLVHLLNN---NKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHhc---cccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 88887775 45789999999999999999988764 67899999999999999999999998888999999999999
Q ss_pred ccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEE
Q psy17912 440 RDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVS 483 (779)
Q Consensus 440 Dip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~ 483 (779)
|+|+|+ +||+||+|.++..|+||+||++|.|..|.
T Consensus 322 Dip~iD---------~VvQ~DpP~~~~~FvHR~GRTaR~gr~G~ 356 (567)
T KOG0345|consen 322 DIPGID---------LVVQFDPPKDPSSFVHRCGRTARAGREGN 356 (567)
T ss_pred CCCCce---------EEEecCCCCChhHHHhhcchhhhccCccc
Confidence 999999 99999999999999999999998886663
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=4.8e-51 Score=466.67 Aligned_cols=352 Identities=31% Similarity=0.447 Sum_probs=308.1
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCC--CCCCCEE
Q psy17912 127 IQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLR--SGEGPIV 204 (779)
Q Consensus 127 i~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~--~~~~~~v 204 (779)
...|.+++|++.+.+.|.++||..|+++|.++|+.+++|+|+|+++|||||||++|++|++..+...+... ....+++
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 35788899999999999999999999999999999999999999999999999999999999987653211 1225799
Q ss_pred EEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhh-cCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEcc
Q psy17912 205 LVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQ-TGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDE 283 (779)
Q Consensus 205 Lil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~-~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDE 283 (779)
|||+||++||.|+.+.++.+....++.+..++|+.+...+.+.+. ..++|+|+||++|++++......++++++|||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 999999999999999999999888999999999988776666664 4589999999999999888788899999999999
Q ss_pred chhhhcCCchHHHHHHHhhcCC--CCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhH
Q psy17912 284 ADRMLDMGFEPQIRKIIGQIRP--DRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDY 361 (779)
Q Consensus 284 aH~l~~~~f~~~l~~il~~l~~--~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~ 361 (779)
||++++++|...+..++..++. +.|++++|||++..+..++..++.++..+.+.... .....+.+.+..+...++..
T Consensus 246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~k~~ 324 (475)
T PRK01297 246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN-VASDTVEQHVYAVAGSDKYK 324 (475)
T ss_pred HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc-CCCCcccEEEEEecchhHHH
Confidence 9999999999999999988854 67999999999999999999999988877665544 22344555566666666666
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERD 441 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDi 441 (779)
.+..++.. ....++||||++++.++.+++.|...++.+..+||++++.+|.++++.|++|+++|||||+++++|||+
T Consensus 325 ~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi 401 (475)
T PRK01297 325 LLYNLVTQ---NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHI 401 (475)
T ss_pred HHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcc
Confidence 66666653 345789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHH
Q psy17912 442 RVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQE 491 (779)
Q Consensus 442 p~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e 491 (779)
|+++ +||+|+.|.+..+|+||+||+||.|..+.++....++
T Consensus 402 ~~v~---------~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~ 442 (475)
T PRK01297 402 DGIS---------HVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGED 442 (475)
T ss_pred cCCC---------EEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHH
Confidence 9999 9999999999999999999999999887666655444
No 25
>KOG0343|consensus
Probab=100.00 E-value=4.1e-52 Score=444.00 Aligned_cols=344 Identities=28% Similarity=0.375 Sum_probs=315.1
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEE
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVL 205 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vL 205 (779)
.+..|.+++|+....+.|...+|..+|.+|+++||..+.|+|++..|.||||||++|++|++.++...+ .....|--||
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~k-Ws~~DGlGal 145 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLK-WSPTDGLGAL 145 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcC-CCCCCCceeE
Confidence 456799999999999999999999999999999999999999999999999999999999999988754 3345677899
Q ss_pred EEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC-cCCCCeeEEEEccc
Q psy17912 206 VLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT-INLHRTSYLVLDEA 284 (779)
Q Consensus 206 il~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~-~~l~~i~~lViDEa 284 (779)
||+|||+||.|+++++.+.+....+..+.+.||.+...+...+. +++|+|||||+|++++..+. ++.+++.++|+|||
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA 224 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA 224 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH
Confidence 99999999999999999999999999999999998766555544 48999999999999998755 67789999999999
Q ss_pred hhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCC-CCCccceEEEEEeccccchhHHH
Q psy17912 285 DRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLN-PTANHNIVQIVDVCQEHEKDYKL 363 (779)
Q Consensus 285 H~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~-~~~~~~i~~~~~~~~~~~k~~~L 363 (779)
|+|+++||...+..|+..+++.+|+++||||.+..+..+++--+.+|..+.+.... ...+.++.|.+..++..+|...|
T Consensus 225 DR~LDMGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L 304 (758)
T KOG0343|consen 225 DRMLDMGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDML 304 (758)
T ss_pred HHHHHHhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999887433 56677889999999998888888
Q ss_pred HHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccccc
Q psy17912 364 QGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK--GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERD 441 (779)
Q Consensus 364 ~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~--g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDi 441 (779)
..++.. +...++|||+.|.+++..+++.+.+. |+++.++||.|++..|.+++..|...+..||+||++++||+|+
T Consensus 305 ~sFI~s---hlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDF 381 (758)
T KOG0343|consen 305 WSFIKS---HLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDF 381 (758)
T ss_pred HHHHHh---ccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCC
Confidence 888775 46789999999999999999999875 8999999999999999999999999899999999999999999
Q ss_pred CcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEE
Q psy17912 442 RVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVS 483 (779)
Q Consensus 442 p~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~ 483 (779)
|.|+ +||.+|+|.++.+|+||+||+.|.+..|-
T Consensus 382 paVd---------wViQ~DCPedv~tYIHRvGRtAR~~~~G~ 414 (758)
T KOG0343|consen 382 PAVD---------WVIQVDCPEDVDTYIHRVGRTARYKERGE 414 (758)
T ss_pred cccc---------eEEEecCchhHHHHHHHhhhhhcccCCCc
Confidence 9999 99999999999999999999999876663
No 26
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.2e-50 Score=454.89 Aligned_cols=356 Identities=28% Similarity=0.441 Sum_probs=306.9
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEE
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVL 205 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vL 205 (779)
...+|+++++++.+.+++.++||..|+|+|.++|+.+++++|+++++|||||||++|++|++..+... ..++++|
T Consensus 26 ~~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~l 100 (401)
T PTZ00424 26 IVDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQAL 100 (401)
T ss_pred ccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEE
Confidence 35789999999999999999999999999999999999999999999999999999999999887532 2356899
Q ss_pred EEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch
Q psy17912 206 VLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD 285 (779)
Q Consensus 206 il~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH 285 (779)
|++|+++|+.|+.+.+..++....+.+..+.|+.....+...+..+++|+|+||++|.+++......++++++|||||||
T Consensus 101 il~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah 180 (401)
T PTZ00424 101 ILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEAD 180 (401)
T ss_pred EECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHH
Confidence 99999999999999999998888888888899988777777777788999999999999998887889999999999999
Q ss_pred hhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccc-cchhHHHH
Q psy17912 286 RMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQE-HEKDYKLQ 364 (779)
Q Consensus 286 ~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~-~~k~~~L~ 364 (779)
++.+.+|...+..++..++++.|++++|||+|+++..+...++.++..+.+..... ....+.+.+..... ..+...+.
T Consensus 181 ~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~ 259 (401)
T PTZ00424 181 EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDEL-TLEGIRQFYVAVEKEEWKFDTLC 259 (401)
T ss_pred HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCc-ccCCceEEEEecChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988887766544332 22344444443332 22334444
Q ss_pred HHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcc
Q psy17912 365 GLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVL 444 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v 444 (779)
.++.. ....++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+++|||||+++++|||+|.+
T Consensus 260 ~~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v 336 (401)
T PTZ00424 260 DLYET---LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQV 336 (401)
T ss_pred HHHHh---cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccC
Confidence 44432 345789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhh
Q psy17912 445 NEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 499 (779)
Q Consensus 445 ~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~ 499 (779)
+ +||+|+.|.+..+|+||+||+||.|..|.++....++....+..+
T Consensus 337 ~---------~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 337 S---------LVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred C---------EEEEECCCCCHHHEeecccccccCCCCceEEEEEcHHHHHHHHHH
Confidence 9 999999999999999999999999988877766655554444443
No 27
>KOG0348|consensus
Probab=100.00 E-value=6e-51 Score=433.97 Aligned_cols=365 Identities=29% Similarity=0.400 Sum_probs=308.7
Q ss_pred CCCCCcCCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCC-CCCCCCE
Q psy17912 126 PIQHFEECNFPPYIMKKIYE-MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPL-RSGEGPI 203 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~-~~~~~~~ 203 (779)
.-..|..++|.+.+...|.. +++..||.+|+++||.+++|+|++|.++||||||++|++|+++.+....+. ....|+.
T Consensus 134 ts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ 213 (708)
T KOG0348|consen 134 TSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPY 213 (708)
T ss_pred ccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCce
Confidence 34679999999999999985 899999999999999999999999999999999999999999999886443 3456899
Q ss_pred EEEEccCHHHHHHHHHHHHHhcccCC-ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcC-CcCCCCeeEEEE
Q psy17912 204 VLVLAPTRELAQQIETVANDFGSATA-TRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQG-TINLHRTSYLVL 281 (779)
Q Consensus 204 vLil~Ptr~La~Q~~~~~~~~~~~~~-l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~-~~~l~~i~~lVi 281 (779)
+|||+||||||.|+++.++++...+. +-.+.+.||..+..+...+++|++|+|+|||+|++++.+. .+.++++.+||+
T Consensus 214 ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVl 293 (708)
T KOG0348|consen 214 ALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVL 293 (708)
T ss_pred EEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEe
Confidence 99999999999999999999988764 4557789999999999999999999999999999999774 468899999999
Q ss_pred ccchhhhcCCchHHHHHHHhhcC-------------CCCceEEeeccccHHHHHHHHHhccCcEEEecCCCC--------
Q psy17912 282 DEADRMLDMGFEPQIRKIIGQIR-------------PDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLN-------- 340 (779)
Q Consensus 282 DEaH~l~~~~f~~~l~~il~~l~-------------~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~-------- 340 (779)
||||++++.||+..+..|++.+. +..|.+++|||++..|..++..-+.+|+.+..+...
T Consensus 294 DEaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~ 373 (708)
T KOG0348|consen 294 DEADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDK 373 (708)
T ss_pred cchhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchh
Confidence 99999999999999999987762 247899999999999999999999999888722111
Q ss_pred ----------------CCCccceEEEEEeccccchhHHHHHHHHHhcc-CCCCcEEEEecchhHHHHHHHHHHhC-----
Q psy17912 341 ----------------PTANHNIVQIVDVCQEHEKDYKLQGLLSQIGS-ERTSKTIIFVETKRKADDITRSVRNK----- 398 (779)
Q Consensus 341 ----------------~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~-~~~~kvLVF~~s~~~ae~L~~~L~~~----- 398 (779)
...++.+.|.+.+++..-+.-.|..+|..... ....++|||+.+.+.++.=++.|...
T Consensus 374 a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~ 453 (708)
T KOG0348|consen 374 AVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHL 453 (708)
T ss_pred hhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhccc
Confidence 12334456666777776676677776655432 35678999999999999888888631
Q ss_pred -----------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCC
Q psy17912 399 -----------------GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKE 461 (779)
Q Consensus 399 -----------------g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~ 461 (779)
+.++..+||+|++++|..++..|...+.-||+||++++||||+|.|. +||.|++
T Consensus 454 e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~---------~vVQYd~ 524 (708)
T KOG0348|consen 454 EGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVG---------LVVQYDP 524 (708)
T ss_pred ccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcC---------eEEEeCC
Confidence 34588999999999999999999998888999999999999999998 9999999
Q ss_pred CCCHHHHHHHhccCCCCCCeE---EEEEcChHHHHHHHHhh
Q psy17912 462 SQQKRDRVLNEFRIGRASILV---SHYNKSQQERDRVLNEF 499 (779)
Q Consensus 462 p~s~~~yiQR~GRaGR~g~~~---~~~~~~~~e~~~~l~e~ 499 (779)
|.+.++|+||+||+.|+|..| .|...++.|..+.+...
T Consensus 525 P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~~l~~~ 565 (708)
T KOG0348|consen 525 PFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVNYLKKH 565 (708)
T ss_pred CCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHHHHHhh
Confidence 999999999999988888665 44455555544444443
No 28
>KOG0346|consensus
Probab=100.00 E-value=9.1e-51 Score=424.16 Aligned_cols=348 Identities=26% Similarity=0.371 Sum_probs=316.5
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCC-CCCCCCEEEE
Q psy17912 128 QHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPL-RSGEGPIVLV 206 (779)
Q Consensus 128 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~-~~~~~~~vLi 206 (779)
.+|++++|++.+++++.+.||++||-+|+.+||.++.|+|+++.|.||||||.+|++|+++.+...+.. ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 689999999999999999999999999999999999999999999999999999999999999886544 4556899999
Q ss_pred EccCHHHHHHHHHHHHHhcccC--CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC-cCCCCeeEEEEcc
Q psy17912 207 LAPTRELAQQIETVANDFGSAT--ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT-INLHRTSYLVLDE 283 (779)
Q Consensus 207 l~Ptr~La~Q~~~~~~~~~~~~--~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~-~~l~~i~~lViDE 283 (779)
++||++||.|++.++.++...+ .+++.-+....+.......+...++|+|+||++++.++..+. ..+..++++|+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 9999999999999999887655 366666666666666667778889999999999999998877 6788999999999
Q ss_pred chhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHH
Q psy17912 284 ADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKL 363 (779)
Q Consensus 284 aH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L 363 (779)
||.++..||+..+.++...+|+..|.++||||+..+++.+.+.++.+|+.+.+...+......+.|+...|.+.+|...+
T Consensus 179 ADLllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflll 258 (569)
T KOG0346|consen 179 ADLLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLL 258 (569)
T ss_pred hhhhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999888877788899999999999999888
Q ss_pred HHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec----------
Q psy17912 364 QGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY---------- 433 (779)
Q Consensus 364 ~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~---------- 433 (779)
..+++.- --.+++|||+|+.+.|-.|.-.|.+.|++.+++.|.|+..-|--++++|..|-.+|||||+
T Consensus 259 yallKL~--LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~ee 336 (569)
T KOG0346|consen 259 YALLKLR--LIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEE 336 (569)
T ss_pred HHHHHHH--HhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhc
Confidence 8887642 2368899999999999999999999999999999999999999999999999999999997
Q ss_pred -------------------------ccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEE
Q psy17912 434 -------------------------NKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYN 486 (779)
Q Consensus 434 -------------------------v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~ 486 (779)
-.+||||+..|. .|+|||+|.+...|+||+||++|+++.|++..
T Consensus 337 e~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~---------~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalS 405 (569)
T KOG0346|consen 337 EVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVS---------NVLNFDFPETVTSYIHRVGRTARGNNKGTALS 405 (569)
T ss_pred cccccccccCCCCccccccccCchhchhccccchhee---------eeeecCCCCchHHHHHhccccccCCCCCceEE
Confidence 245888998887 99999999999999999999999988775544
No 29
>KOG0332|consensus
Probab=100.00 E-value=3.5e-49 Score=405.18 Aligned_cols=346 Identities=27% Similarity=0.412 Sum_probs=303.1
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCC
Q psy17912 123 VPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSG--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGE 200 (779)
Q Consensus 123 ~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~ 200 (779)
..-.+.+|+++.|.|++++.++.++|++|+.+|..++|.++.. +|+|.++..|+|||.||.+.++.++... ..
T Consensus 85 PlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~-----~~ 159 (477)
T KOG0332|consen 85 PLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD-----VV 159 (477)
T ss_pred CccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc-----cc
Confidence 4445689999999999999999999999999999999999975 6999999999999999999999887653 24
Q ss_pred CCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHc-CCcCCCCeeEE
Q psy17912 201 GPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQ-GTINLHRTSYL 279 (779)
Q Consensus 201 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~-~~~~l~~i~~l 279 (779)
.|.+++|+||++||.|+.+++.+.++..++......-+.... .-..+ ..+|+|+||+.+++++.. ..+.+..+..+
T Consensus 160 ~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~~-rG~~i--~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 160 VPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKAK-RGNKL--TEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred CCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCcccc-cCCcc--hhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 678999999999999999999999999888887776555111 11111 147999999999999987 66789999999
Q ss_pred EEccchhhhcC-CchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEecc-cc
Q psy17912 280 VLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQ-EH 357 (779)
Q Consensus 280 ViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~-~~ 357 (779)
|+||||.|++. ||...-..|...++++.|++++|||+...+..++....+++..+.+...+... .++.|++..|. ..
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L-~~IkQlyv~C~~~~ 315 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELAL-DNIKQLYVLCACRD 315 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccc-cchhhheeeccchh
Confidence 99999988765 79999999999999999999999999999999999999999998888877544 56777776665 45
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q psy17912 358 EKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQ 437 (779)
Q Consensus 358 ~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~ 437 (779)
+|...|..+...+ .-++.||||.|+..|..|+..|...|+.|..+||+|...+|..+++.|+.|..+|||+|++++|
T Consensus 316 ~K~~~l~~lyg~~---tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV~AR 392 (477)
T KOG0332|consen 316 DKYQALVNLYGLL---TIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNVCAR 392 (477)
T ss_pred hHHHHHHHHHhhh---hhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcCcceEEEEechhhc
Confidence 6777777766654 4678999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCcccccccccceeEEEEcCCCC------CHHHHHHHhccCCCCCCeEEEEEcCh
Q psy17912 438 QERDRVLNEFRIGRASILVSQYKESQ------QKRDRVLNEFRIGRASILVSHYNKSQ 489 (779)
Q Consensus 438 GIDip~v~~~~~~~~~~~VI~y~~p~------s~~~yiQR~GRaGR~g~~~~~~~~~~ 489 (779)
|||++.|+ +|||||+|. +++.|+||+||+||.|..|.++++-.
T Consensus 393 GiDv~qVs---------~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~ 441 (477)
T KOG0332|consen 393 GIDVAQVS---------VVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVD 441 (477)
T ss_pred ccccceEE---------EEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeec
Confidence 99999988 999999996 67899999999999999998888643
No 30
>KOG0347|consensus
Probab=100.00 E-value=4.7e-49 Score=420.68 Aligned_cols=357 Identities=25% Similarity=0.368 Sum_probs=293.2
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEccCCCChhHHHHHHHHHHHhccCCC----
Q psy17912 122 CVPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSG-CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPL---- 196 (779)
Q Consensus 122 ~~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g-~dvii~apTGsGKTl~~~lp~l~~l~~~~~~---- 196 (779)
..+..+..|.++.+|..++++|..+||..||++|.-.+|.+..| .|++..|.||||||++|-+|++..+......
T Consensus 175 ~~~~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~ 254 (731)
T KOG0347|consen 175 SSKVDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQEL 254 (731)
T ss_pred ccccChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhh
Confidence 34456677999999999999999999999999999999999999 7999999999999999999999854432111
Q ss_pred --CCCCCC--EEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCc-
Q psy17912 197 --RSGEGP--IVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTI- 271 (779)
Q Consensus 197 --~~~~~~--~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~- 271 (779)
....++ .+||++|||+||.|+.+.+..++...++++..++||.....+.+.+...++|+|+|||+|+.++..+..
T Consensus 255 ~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 255 SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred hhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh
Confidence 112233 599999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred --CCCCeeEEEEccchhhhcCCchHHHHHHHhhcC-----CCCceEEeeccccHHH---------------------HHH
Q psy17912 272 --NLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIR-----PDRQVLMWSATWPKEV---------------------QKL 323 (779)
Q Consensus 272 --~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~-----~~~qilllSAT~~~~v---------------------~~l 323 (779)
+++++.++|+||||+|++.|....+.+|+..+. ..+|++.||||++-.. +.+
T Consensus 335 l~~~k~vkcLVlDEaDRmvekghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~~~k~~~~~~kiq~L 414 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADRMVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKKKDKEDELNAKIQHL 414 (731)
T ss_pred hhhhhhceEEEEccHHHHhhhccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhhccchhhhhhHHHHHH
Confidence 688899999999999999998888888887764 4689999999975322 222
Q ss_pred HHHh--ccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCe
Q psy17912 324 AEDF--LVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWA 401 (779)
Q Consensus 324 ~~~~--l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~ 401 (779)
++.. ..+|..+...+... ....+......|+..+|...|..++.. -++++|||||+...+..|+-+|...+++
T Consensus 415 mk~ig~~~kpkiiD~t~q~~-ta~~l~Es~I~C~~~eKD~ylyYfl~r----yPGrTlVF~NsId~vKRLt~~L~~L~i~ 489 (731)
T KOG0347|consen 415 MKKIGFRGKPKIIDLTPQSA-TASTLTESLIECPPLEKDLYLYYFLTR----YPGRTLVFCNSIDCVKRLTVLLNNLDIP 489 (731)
T ss_pred HHHhCccCCCeeEecCcchh-HHHHHHHHhhcCCccccceeEEEEEee----cCCceEEEechHHHHHHHHHHHhhcCCC
Confidence 2221 12344444433321 112222233334444555555555443 3789999999999999999999999999
Q ss_pred EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCe
Q psy17912 402 AVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASIL 481 (779)
Q Consensus 402 v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~ 481 (779)
...+|+.|.+.+|..-++.|+....-|||||++|+||||+|.|. +||||..|.+.+-|+||+||+.|++..
T Consensus 490 p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~---------HVIHYqVPrtseiYVHRSGRTARA~~~ 560 (731)
T KOG0347|consen 490 PLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQ---------HVIHYQVPRTSEIYVHRSGRTARANSE 560 (731)
T ss_pred CchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcc---------eEEEeecCCccceeEecccccccccCC
Confidence 99999999999999999999999999999999999999999998 999999999999999999999999988
Q ss_pred EEEEEcChHHH
Q psy17912 482 VSHYNKSQQER 492 (779)
Q Consensus 482 ~~~~~~~~~e~ 492 (779)
|..+.+..+..
T Consensus 561 Gvsvml~~P~e 571 (731)
T KOG0347|consen 561 GVSVMLCGPQE 571 (731)
T ss_pred CeEEEEeChHH
Confidence 86666544443
No 31
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.2e-46 Score=446.29 Aligned_cols=332 Identities=18% Similarity=0.168 Sum_probs=262.2
Q ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHH
Q psy17912 134 NFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTREL 213 (779)
Q Consensus 134 ~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~L 213 (779)
.+++.+.+.|.+.||.+|+++|.++++.+++|+|+++++|||||||++|++|++..+... .++++|||+||++|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 589999999999999999999999999999999999999999999999999999998753 25689999999999
Q ss_pred HHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC----cCCCCeeEEEEccchhhhc
Q psy17912 214 AQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT----INLHRTSYLVLDEADRMLD 289 (779)
Q Consensus 214 a~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~----~~l~~i~~lViDEaH~l~~ 289 (779)
|.|+.+.++++. ..++++..+.|+++. .+...+..+++|+|+||++|...+.... ..++++++|||||||.+.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~~-~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTPT-EERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCCH-HHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999987 457888888887764 3445566678999999999875432211 2378899999999999876
Q ss_pred CCchHHHHHHHhh-------cCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccc------
Q psy17912 290 MGFEPQIRKIIGQ-------IRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQE------ 356 (779)
Q Consensus 290 ~~f~~~l~~il~~-------l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~------ 356 (779)
. |...+..++.. .+.++|++++|||+++..+ ++..++..++.+.. ... ....... ...+.+.
T Consensus 172 ~-fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~-~~~~l~g~~~~~i~-~~~-~~~~~~~-~~~~~p~~~~~~~ 246 (742)
T TIGR03817 172 V-FGSHVALVLRRLRRLCARYGASPVFVLASATTADPAA-AASRLIGAPVVAVT-EDG-SPRGART-VALWEPPLTELTG 246 (742)
T ss_pred c-cHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHH-HHHHHcCCCeEEEC-CCC-CCcCceE-EEEecCCcccccc
Confidence 3 77666555443 3467899999999998754 56777777655432 221 1111111 1111111
Q ss_pred -------cchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC--------CCeEEEEcCCCCHHHHHHHHHHH
Q psy17912 357 -------HEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK--------GWAAVAIHGNKSQQERDRVLNEF 421 (779)
Q Consensus 357 -------~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~--------g~~v~~ihg~~~~~eR~~il~~F 421 (779)
.........++..+.. .+.++||||+|++.|+.++..|+.. +..+..|||++++++|.++++.|
T Consensus 247 ~~~~~~r~~~~~~~~~~l~~l~~-~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f 325 (742)
T TIGR03817 247 ENGAPVRRSASAEAADLLADLVA-EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERAL 325 (742)
T ss_pred ccccccccchHHHHHHHHHHHHH-CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHH
Confidence 0001122233333322 3679999999999999999998763 56789999999999999999999
Q ss_pred hcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcC
Q psy17912 422 RIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKS 488 (779)
Q Consensus 422 ~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~ 488 (779)
++|++++||||+++++|||++.++ +||+|+.|.+..+|+||+||+||.|..+.++...
T Consensus 326 ~~G~i~vLVaTd~lerGIDI~~vd---------~VI~~~~P~s~~~y~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 326 RDGELLGVATTNALELGVDISGLD---------AVVIAGFPGTRASLWQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred HcCCceEEEECchHhccCCccccc---------EEEEeCCCCCHHHHHHhccccCCCCCCcEEEEEe
Confidence 999999999999999999999998 9999999999999999999999999877666654
No 32
>KOG0327|consensus
Probab=100.00 E-value=2.8e-47 Score=395.42 Aligned_cols=354 Identities=31% Similarity=0.487 Sum_probs=321.0
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEE
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVL 205 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vL 205 (779)
-+.+|++++|++.+++.++..||++|+.+|+.|+..+.+|.|+++.+++|+|||.+|.+++++.+.-. .+...++
T Consensus 24 vvdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-----~ke~qal 98 (397)
T KOG0327|consen 24 VVDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-----VKETQAL 98 (397)
T ss_pred HhhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-----hHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999887432 2345799
Q ss_pred EEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH-HHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccc
Q psy17912 206 VLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQV-KALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEA 284 (779)
Q Consensus 206 il~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~-~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEa 284 (779)
+++|+++||.|+.+....++...+.++..+.|+.....+. ......++|+++||+++.+++....+....+.++|+|||
T Consensus 99 ilaPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEa 178 (397)
T KOG0327|consen 99 ILAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEA 178 (397)
T ss_pred HhcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecch
Confidence 9999999999999999999999999999888888876444 444456899999999999999888888888999999999
Q ss_pred hhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHH
Q psy17912 285 DRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQ 364 (779)
Q Consensus 285 H~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 364 (779)
|.|+..+|..++..++..++++.|++++|||+|+++....++|+.+|+.+.+...+.+ ...+.+.+..+....|...|.
T Consensus 179 DEmLs~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~lt-l~gikq~~i~v~k~~k~~~l~ 257 (397)
T KOG0327|consen 179 DEMLSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELT-LEGIKQFYINVEKEEKLDTLC 257 (397)
T ss_pred HhhhccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhh-hhheeeeeeeccccccccHHH
Confidence 9999999999999999999999999999999999999999999999999999888755 556777777777667877777
Q ss_pred HHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcc
Q psy17912 365 GLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVL 444 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v 444 (779)
.+.. ...+.+||||+++.++.+...|...++.+.++||+|.+.+|..+++.|++|..+|||.|+.+++|+|+..+
T Consensus 258 dl~~-----~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~ 332 (397)
T KOG0327|consen 258 DLYR-----RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQV 332 (397)
T ss_pred HHHH-----hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhc
Confidence 7777 34678999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhh
Q psy17912 445 NEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 499 (779)
Q Consensus 445 ~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~ 499 (779)
. +|++|+.|.+.+.|+||+||+||.|..|.+++...++..+.+.+.
T Consensus 333 s---------lvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~d~~~lk~i 378 (397)
T KOG0327|consen 333 S---------LVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEEDVRDLKDI 378 (397)
T ss_pred c---------eeeeeccccchhhhhhhcccccccCCCceeeeeehHhhHHHHHhH
Confidence 8 999999999999999999999999999999888877766666554
No 33
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.7e-45 Score=432.98 Aligned_cols=327 Identities=19% Similarity=0.184 Sum_probs=255.0
Q ss_pred CCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCH
Q psy17912 133 CNFPPYIMKKIYE-MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTR 211 (779)
Q Consensus 133 ~~l~~~l~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr 211 (779)
++....+...++. +|+..|+|+|.++|+.++.|+|+|+++|||+|||+||++|++.. ++.+|||+|++
T Consensus 442 fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTLVISPLi 510 (1195)
T PLN03137 442 FPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITLVISPLV 510 (1195)
T ss_pred CCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEEEEeCHH
Confidence 3455666666665 89999999999999999999999999999999999999999852 34799999999
Q ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhh------cCCeEEEeChHHHHH--HHHcCC---cCCCCeeEEE
Q psy17912 212 ELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQ------TGAEIVIATPGRLID--YLEQGT---INLHRTSYLV 280 (779)
Q Consensus 212 ~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~------~~~~IiV~Tpe~Ll~--~l~~~~---~~l~~i~~lV 280 (779)
+|+.++...+... ++.+..+.++....++...+. ..++|+|+|||+|.. .+.... .....+++||
T Consensus 511 SLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIV 586 (1195)
T PLN03137 511 SLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFV 586 (1195)
T ss_pred HHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceec
Confidence 9999776666553 788889999888766654443 357999999999863 222111 1234589999
Q ss_pred EccchhhhcCC--chHHHHHH--HhhcCCCCceEEeeccccHHHHHHHHHhccCc-EEEecCCCCCCCccceEEEEEecc
Q psy17912 281 LDEADRMLDMG--FEPQIRKI--IGQIRPDRQVLMWSATWPKEVQKLAEDFLVDY-VQLNIGSLNPTANHNIVQIVDVCQ 355 (779)
Q Consensus 281 iDEaH~l~~~~--f~~~l~~i--l~~l~~~~qilllSAT~~~~v~~l~~~~l~~~-~~i~i~~~~~~~~~~i~~~~~~~~ 355 (779)
|||||++++|| |++.+..+ +....+..++++||||+++.++..+...+... ..+...... ..++... +..
T Consensus 587 IDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~---RpNL~y~--Vv~ 661 (1195)
T PLN03137 587 IDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFN---RPNLWYS--VVP 661 (1195)
T ss_pred cCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccC---ccceEEE--Eec
Confidence 99999999997 88888775 55555789999999999999888766655321 112222221 2233222 222
Q ss_pred ccch-hHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy17912 356 EHEK-DYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYN 434 (779)
Q Consensus 356 ~~~k-~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v 434 (779)
...+ ...+..++.. .....++||||.++++|+.+++.|...|+.+..|||+|++++|..+++.|..|+++|||||++
T Consensus 662 k~kk~le~L~~~I~~--~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdA 739 (1195)
T PLN03137 662 KTKKCLEDIDKFIKE--NHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVA 739 (1195)
T ss_pred cchhHHHHHHHHHHh--cccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEech
Confidence 2111 2233333332 123567999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChH
Q psy17912 435 KSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQ 490 (779)
Q Consensus 435 ~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~ 490 (779)
+++|||+|+|+ +||||++|.+++.|+||+|||||+|..+.++.+...
T Consensus 740 FGMGIDkPDVR---------~VIHydlPkSiEsYyQriGRAGRDG~~g~cILlys~ 786 (1195)
T PLN03137 740 FGMGINKPDVR---------FVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSY 786 (1195)
T ss_pred hhcCCCccCCc---------EEEEcCCCCCHHHHHhhhcccCCCCCCceEEEEecH
Confidence 99999999999 999999999999999999999999977755555433
No 34
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.6e-45 Score=418.17 Aligned_cols=323 Identities=19% Similarity=0.214 Sum_probs=248.2
Q ss_pred HcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 145 EMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 145 ~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
.+||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. ++.+|||+|+++|+.|+.+.+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 379999999999999999999999999999999999999999852 346899999999999999888765
Q ss_pred cccCCceEEEEeCCCCChhhHHH---h-hcCCeEEEeChHHHHHHH-HcCCc-CCCCeeEEEEccchhhhcCC--chHHH
Q psy17912 225 GSATATRVACVFGGAPKGPQVKA---L-QTGAEIVIATPGRLIDYL-EQGTI-NLHRTSYLVLDEADRMLDMG--FEPQI 296 (779)
Q Consensus 225 ~~~~~l~v~~~~gg~~~~~~~~~---l-~~~~~IiV~Tpe~Ll~~l-~~~~~-~l~~i~~lViDEaH~l~~~~--f~~~l 296 (779)
++.+..+.++....+.... + ...++|+++||+++.... ....+ ....+++|||||||++++|+ |++.+
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~ 150 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDY 150 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHH
Confidence 6777777777665433222 2 234799999999975322 11111 46789999999999999987 77777
Q ss_pred HHH--HhhcCCCCceEEeeccccHHHHHHHHHhcc--CcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhcc
Q psy17912 297 RKI--IGQIRPDRQVLMWSATWPKEVQKLAEDFLV--DYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGS 372 (779)
Q Consensus 297 ~~i--l~~l~~~~qilllSAT~~~~v~~l~~~~l~--~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~ 372 (779)
..+ +....++.+++++|||+++.+...+...+. ++..... ... ..++...+... .......+..++.. .
T Consensus 151 ~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~-s~~---r~nl~~~v~~~-~~~~~~~l~~~l~~--~ 223 (470)
T TIGR00614 151 KALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCT-SFD---RPNLYYEVRRK-TPKILEDLLRFIRK--E 223 (470)
T ss_pred HHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeC-CCC---CCCcEEEEEeC-CccHHHHHHHHHHH--h
Confidence 665 334457889999999999988776666542 3333322 211 12222222111 11222333333332 2
Q ss_pred CCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccc
Q psy17912 373 ERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRA 452 (779)
Q Consensus 373 ~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~ 452 (779)
..+..+||||+++++++.+++.|...|+.+..+||+|++++|..+++.|++|+++|||||+++++|||+|+++
T Consensus 224 ~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~------- 296 (470)
T TIGR00614 224 FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVR------- 296 (470)
T ss_pred cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccce-------
Confidence 3456679999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHh
Q psy17912 453 SILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 498 (779)
Q Consensus 453 ~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e 498 (779)
+||+|++|.+++.|+||+|||||.|..+.++..........+..
T Consensus 297 --~VI~~~~P~s~~~y~Qr~GRaGR~G~~~~~~~~~~~~d~~~~~~ 340 (470)
T TIGR00614 297 --FVIHYSLPKSMESYYQESGRAGRDGLPSECHLFYAPADINRLRR 340 (470)
T ss_pred --EEEEeCCCCCHHHHHhhhcCcCCCCCCceEEEEechhHHHHHHH
Confidence 99999999999999999999999997776665544444443333
No 35
>KOG4284|consensus
Probab=100.00 E-value=4e-46 Score=403.34 Aligned_cols=355 Identities=26% Similarity=0.364 Sum_probs=314.4
Q ss_pred CCCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCC
Q psy17912 119 PGKCVPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRS 198 (779)
Q Consensus 119 ~~~~~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~ 198 (779)
...-.|.-...|+++.|...++..|...+|..||++|..|||+++.+.|+||.+..|+|||++|...++..+...
T Consensus 16 s~DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~----- 90 (980)
T KOG4284|consen 16 SIDVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR----- 90 (980)
T ss_pred ccccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----
Confidence 344466667789999999999999999999999999999999999999999999999999999998888776542
Q ss_pred CCCCEEEEEccCHHHHHHHHHHHHHhccc-CCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCee
Q psy17912 199 GEGPIVLVLAPTRELAQQIETVANDFGSA-TATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTS 277 (779)
Q Consensus 199 ~~~~~vLil~Ptr~La~Q~~~~~~~~~~~-~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~ 277 (779)
...+.++||+|||++|.|+.+.+.+++.. .++++.++.||+....+...+.. ++|+|+|||++.+++..+.++.+.+.
T Consensus 91 ~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vr 169 (980)
T KOG4284|consen 91 SSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVR 169 (980)
T ss_pred cCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCcccee
Confidence 34678999999999999999999999874 48999999999988777666654 79999999999999999999999999
Q ss_pred EEEEccchhhhc-CCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccc
Q psy17912 278 YLVLDEADRMLD-MGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQE 356 (779)
Q Consensus 278 ~lViDEaH~l~~-~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~ 356 (779)
++|+||||.+.+ ..|...+..|+..++..+|++++|||.|..+..++.+++.+|..+.....+. ..-.+.|++.....
T Consensus 170 lfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~-~L~GikQyv~~~~s 248 (980)
T KOG4284|consen 170 LFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDV-QLFGIKQYVVAKCS 248 (980)
T ss_pred EEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCc-eeechhheeeeccC
Confidence 999999999888 4599999999999999999999999999999999999999999998877663 44566776665543
Q ss_pred c--------chhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcE
Q psy17912 357 H--------EKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASI 428 (779)
Q Consensus 357 ~--------~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~I 428 (779)
. .|.+.|-.+++.| +-.++||||+....|+.++.+|+..|+.|.++.|.|++.+|..+++.++.=.++|
T Consensus 249 ~nnsveemrlklq~L~~vf~~i---py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rI 325 (980)
T KOG4284|consen 249 PNNSVEEMRLKLQKLTHVFKSI---PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRI 325 (980)
T ss_pred CcchHHHHHHHHHHHHHHHhhC---chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhceEEE
Confidence 2 2555566666654 4578999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHH
Q psy17912 429 LVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQER 492 (779)
Q Consensus 429 LVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~ 492 (779)
||+|+..+||||-+.++ +|||.|.|.+.+.|.||+|||||.|..|..+++...++
T Consensus 326 LVsTDLtaRGIDa~~vN---------LVVNiD~p~d~eTY~HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 326 LVSTDLTARGIDADNVN---------LVVNIDAPADEETYFHRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred EEecchhhccCCccccc---------eEEecCCCcchHHHHHHhhhcccccccceeEEEeccch
Confidence 99999999999999999 99999999999999999999999998887776544333
No 36
>KOG0337|consensus
Probab=100.00 E-value=1.3e-46 Score=391.59 Aligned_cols=472 Identities=26% Similarity=0.327 Sum_probs=369.6
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEE
Q psy17912 127 IQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLV 206 (779)
Q Consensus 127 i~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLi 206 (779)
.-+|..++|+..+.+++.+.||..|||+|+..+|.++.++|++..+-||||||.||++|+++++.... ..|.++++
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 35788899999999999999999999999999999999999999999999999999999999998753 34679999
Q ss_pred EccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchh
Q psy17912 207 LAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADR 286 (779)
Q Consensus 207 l~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~ 286 (779)
++||++||.|..+..+++++..+++.++++|+...+++...+..++|||++||++++.....-.+.|+.+.||||||||+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999998899999999999988766668899999999999999
Q ss_pred hhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHH
Q psy17912 287 MLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGL 366 (779)
Q Consensus 287 l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~l 366 (779)
+.++||.+++.+++..++.++|+++||||+|..+..+++.-+.+|+.+.++... .....++..+..+...+|...|..+
T Consensus 176 lfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvet-kise~lk~~f~~~~~a~K~aaLl~i 254 (529)
T KOG0337|consen 176 LFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVET-KISELLKVRFFRVRKAEKEAALLSI 254 (529)
T ss_pred HHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhh-hcchhhhhheeeeccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988854433 5556666677778888899899888
Q ss_pred HHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccc
Q psy17912 367 LSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNE 446 (779)
Q Consensus 367 l~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~ 446 (779)
+..... ..+++|||+|+..++.+...|...|+.+..++|.+++.-|..-+.+|+.++..+||.|+++++|+|+|...
T Consensus 255 l~~~~~--~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplld- 331 (529)
T KOG0337|consen 255 LGGRIK--DKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLD- 331 (529)
T ss_pred Hhcccc--ccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccc-
Confidence 887543 56899999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHH--hhhccccceeeccccccHH-H------
Q psy17912 447 FRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLN--EFRIGRASILVSHYNKSQQ-E------ 517 (779)
Q Consensus 447 ~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~--e~~~~~~~il~~~~~~~~~-~------ 517 (779)
.||+||.|.+..-|+||.||+.|+|..+++|..-..+..-.+- ....++.-+.......-.+ .
T Consensus 332 --------nvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~~~~yl~DL~lflgr~~~~~~~~~e~d~~~t~vigr 403 (529)
T KOG0337|consen 332 --------NVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVASTDDPYLLDLQLFLGRPLIFAISHFEYDCDDTTVIGR 403 (529)
T ss_pred --------ccccccCCCCCceEEEEecchhhccccceEEEEEecccchhhhhhhhhcCCceeeccchhhhccccceeecc
Confidence 9999999999999999999999999888888765444432221 2233443222221110000 0
Q ss_pred -HHHhhhhhcccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhH
Q psy17912 518 -RDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQER 596 (779)
Q Consensus 518 -~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (779)
=+.+.....-+-.+++.+..+.+...+ ...+.++ -++.--.+....+.+-....-+..||++.-= +-+.-..-|+
T Consensus 404 ~P~~~v~~~~~~~q~~~~~~~el~~l~~-~a~ka~~-~y~rtr~~~s~es~kR~ke~~~~~g~~~~~~--~~~e~~e~e~ 479 (529)
T KOG0337|consen 404 SPQSLVSLESEGHQSILESNRELQVLAR-TADKAEM-LYTRTRPSPSPESLKRAKEMISSKGLHPRFK--SFGENEEKEK 479 (529)
T ss_pred CcHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHHHHH-HhhccCCCCCHHHHHHHHhhhcccCCCcccc--cccchhhHHh
Confidence 000000001112222222222211111 1111111 1222223445555555556666779986532 3455555666
Q ss_pred hhHhhhhhcCCceeEEeccccc
Q psy17912 597 DRVLNEFRIGRASILVSHYNKS 618 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~ 618 (779)
-.+|+.-++=|+.--|=..||+
T Consensus 480 ~~~~~kik~~r~~~tiFe~~~~ 501 (529)
T KOG0337|consen 480 LDILYKIKNYRSRETIFEINKS 501 (529)
T ss_pred hHHHHHHhhcccchhhhhhhhh
Confidence 6777776666666655556665
No 37
>KOG0344|consensus
Probab=100.00 E-value=1.5e-45 Score=400.27 Aligned_cols=356 Identities=29% Similarity=0.407 Sum_probs=301.3
Q ss_pred CCCCCCCCCCCcCC----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCC
Q psy17912 120 GKCVPRPIQHFEEC----NFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRP 195 (779)
Q Consensus 120 ~~~~p~pi~~f~~~----~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~ 195 (779)
+...|+|+.+|.++ ...+.+++++...+|..|+|+|.+++|.++.++|+++|+|||+|||++|.+|++.++.....
T Consensus 124 G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~ 203 (593)
T KOG0344|consen 124 GFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQ 203 (593)
T ss_pred CCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhc
Confidence 34489999999984 57899999999999999999999999999999999999999999999999999999988654
Q ss_pred CCCCCCCEEEEEccCHHHHHHHHHHHHHhc--ccCCceEEEEeCCCCChh-hHHHhhcCCeEEEeChHHHHHHHHcCC--
Q psy17912 196 LRSGEGPIVLVLAPTRELAQQIETVANDFG--SATATRVACVFGGAPKGP-QVKALQTGAEIVIATPGRLIDYLEQGT-- 270 (779)
Q Consensus 196 ~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~--~~~~l~v~~~~gg~~~~~-~~~~l~~~~~IiV~Tpe~Ll~~l~~~~-- 270 (779)
.....|-+++|+.||++||.|++.++.++. ...++++..+........ ........++|++.||-++...+..+.
T Consensus 204 ~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~ 283 (593)
T KOG0344|consen 204 EKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLN 283 (593)
T ss_pred ccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCcc
Confidence 444567899999999999999999999998 656665554443322111 112223347999999999999997765
Q ss_pred cCCCCeeEEEEccchhhhcC-CchHHHHHHHhhcC-CCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceE
Q psy17912 271 INLHRTSYLVLDEADRMLDM-GFEPQIRKIIGQIR-PDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIV 348 (779)
Q Consensus 271 ~~l~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~-~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~ 348 (779)
+.++.+.++|+||||++.+. .|..++..|+..+. ++..+-+||||++..++++++....+++.+.++..+. ....+.
T Consensus 284 idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~s-a~~~V~ 362 (593)
T KOG0344|consen 284 IDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNS-ANETVD 362 (593)
T ss_pred chhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchh-Hhhhhh
Confidence 67999999999999999998 89999999988764 6788889999999999999999999999999988764 345566
Q ss_pred EEEEec-cccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHH-HhCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy17912 349 QIVDVC-QEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSV-RNKGWAAVAIHGNKSQQERDRVLNEFRIGRA 426 (779)
Q Consensus 349 ~~~~~~-~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L-~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~ 426 (779)
|...++ .+..|.-.+.+++.. .-..++|||+++.+.|..|...| .-.++.+.++||..++.+|+++++.|+.|++
T Consensus 363 QelvF~gse~~K~lA~rq~v~~---g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~I 439 (593)
T KOG0344|consen 363 QELVFCGSEKGKLLALRQLVAS---GFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKI 439 (593)
T ss_pred hhheeeecchhHHHHHHHHHhc---cCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCe
Confidence 555544 444555555555554 35789999999999999999999 6678999999999999999999999999999
Q ss_pred cEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcC
Q psy17912 427 SILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKS 488 (779)
Q Consensus 427 ~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~ 488 (779)
.|||||+++++|+|+.+++ +||+||.|.+..+|+||+||+||+|..+.+|+..
T Consensus 440 wvLicTdll~RGiDf~gvn---------~VInyD~p~s~~syihrIGRtgRag~~g~Aitfy 492 (593)
T KOG0344|consen 440 WVLICTDLLARGIDFKGVN---------LVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFY 492 (593)
T ss_pred eEEEehhhhhccccccCcc---------eEEecCCCchhHHHHHHhhccCCCCCCcceEEEe
Confidence 9999999999999999999 9999999999999999999999998666444433
No 38
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=5.4e-44 Score=417.79 Aligned_cols=328 Identities=20% Similarity=0.243 Sum_probs=251.9
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHH
Q psy17912 137 PYIMKKIYE-MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQ 215 (779)
Q Consensus 137 ~~l~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~ 215 (779)
+...+.|++ +||..|+|+|+++++.+++|+|+++++|||+|||++|++|++.. ...+|||+|+++|+.
T Consensus 11 ~~~~~~l~~~fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~~ 79 (607)
T PRK11057 11 SLAKQVLQETFGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLMK 79 (607)
T ss_pred hHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHHH
Confidence 333444443 79999999999999999999999999999999999999999853 236899999999999
Q ss_pred HHHHHHHHhcccCCceEEEEeCCCCChhhHHH---h-hcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC
Q psy17912 216 QIETVANDFGSATATRVACVFGGAPKGPQVKA---L-QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG 291 (779)
Q Consensus 216 Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~---l-~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~ 291 (779)
|+.+.+..+ ++.+..+.++....+.... + ....+++++||+++........+...++++|||||||++.+|+
T Consensus 80 dqv~~l~~~----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G 155 (607)
T PRK11057 80 DQVDQLLAN----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWG 155 (607)
T ss_pred HHHHHHHHc----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccccc
Confidence 999988875 6677777776655443322 2 2347899999999874322233345578999999999999987
Q ss_pred --chHHHHHH--HhhcCCCCceEEeeccccHHHHHHHHHhc--cCcEEEecCCCCCCCccceEEEEEeccccchhHHHHH
Q psy17912 292 --FEPQIRKI--IGQIRPDRQVLMWSATWPKEVQKLAEDFL--VDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQG 365 (779)
Q Consensus 292 --f~~~l~~i--l~~l~~~~qilllSAT~~~~v~~l~~~~l--~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 365 (779)
|++.+..+ +....++.+++++|||+++.+...+...+ .++... ..... ..++... +.....+.. .
T Consensus 156 ~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~-~~~~~---r~nl~~~--v~~~~~~~~---~ 226 (607)
T PRK11057 156 HDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD---RPNIRYT--LVEKFKPLD---Q 226 (607)
T ss_pred CcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEE-ECCCC---CCcceee--eeeccchHH---H
Confidence 77777655 33344789999999999988776554443 334332 22222 1222211 222222233 3
Q ss_pred HHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccc
Q psy17912 366 LLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLN 445 (779)
Q Consensus 366 ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~ 445 (779)
++..+....+.++||||+|+++|+.+++.|...++.+..+||+|++++|..+++.|+.|+++|||||+++++|||+|+|+
T Consensus 227 l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~ 306 (607)
T PRK11057 227 LMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVR 306 (607)
T ss_pred HHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcC
Confidence 33333344678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHH
Q psy17912 446 EFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLN 497 (779)
Q Consensus 446 ~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~ 497 (779)
+||+|++|.+.++|+||+|||||.|..+.++.....+....+.
T Consensus 307 ---------~VI~~d~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~~~ 349 (607)
T PRK11057 307 ---------FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLR 349 (607)
T ss_pred ---------EEEEeCCCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHHHH
Confidence 9999999999999999999999999776555554444443333
No 39
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.9e-43 Score=421.47 Aligned_cols=371 Identities=19% Similarity=0.224 Sum_probs=278.0
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE
Q psy17912 129 HFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPI-ALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL 207 (779)
Q Consensus 129 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil 207 (779)
.|++++||+.+.+.+.+.||.+|+|+|.++++. +.+++|+++++|||||||++|.+|++..+.. +.++||+
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~~--------~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIAR--------GGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHhc--------CCcEEEE
Confidence 578899999999999999999999999999998 7799999999999999999999999998853 4589999
Q ss_pred ccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhh
Q psy17912 208 APTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRM 287 (779)
Q Consensus 208 ~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l 287 (779)
+|+++||.|+++.++++.. .++++..++|+...... ....++|+||||+++..++......++++++|||||+|.+
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~---~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE---WLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc---ccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999998754 48899999998765432 2235799999999999988766566889999999999999
Q ss_pred hcCCchHHHHHHHhhc---CCCCceEEeeccccHHHHHHHHHhccCcEE-EecCCCCCCCccceE--------EEEEecc
Q psy17912 288 LDMGFEPQIRKIIGQI---RPDRQVLMWSATWPKEVQKLAEDFLVDYVQ-LNIGSLNPTANHNIV--------QIVDVCQ 355 (779)
Q Consensus 288 ~~~~f~~~l~~il~~l---~~~~qilllSAT~~~~v~~l~~~~l~~~~~-i~i~~~~~~~~~~i~--------~~~~~~~ 355 (779)
.+.+++..++.++..+ .++.|++++|||+++. .++. .|+..... ....+.. ....+. .......
T Consensus 150 ~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la-~wl~~~~~~~~~rpv~--l~~~v~~~~~~~~~~~~~~~~ 225 (737)
T PRK02362 150 DSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELA-DWLDAELVDSEWRPID--LREGVFYGGAIHFDDSQREVE 225 (737)
T ss_pred CCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHH-HHhCCCcccCCCCCCC--CeeeEecCCeeccccccccCC
Confidence 9888888888776554 5789999999999763 2332 33321110 0000000 000000 0000011
Q ss_pred ccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC------------------------------------C
Q psy17912 356 EHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK------------------------------------G 399 (779)
Q Consensus 356 ~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~------------------------------------g 399 (779)
...+...+..++..+ . .++++||||+|++.|+.++..|... .
T Consensus 226 ~~~~~~~~~~~~~~~-~-~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~ 303 (737)
T PRK02362 226 VPSKDDTLNLVLDTL-E-EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVA 303 (737)
T ss_pred CccchHHHHHHHHHH-H-cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHH
Confidence 111122222233322 1 4689999999999999999888643 1
Q ss_pred CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEE----cC-----CCCCHHHHHH
Q psy17912 400 WAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQ----YK-----ESQQKRDRVL 470 (779)
Q Consensus 400 ~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~----y~-----~p~s~~~yiQ 470 (779)
..++++||+|++.+|..+++.|++|.++|||||+++++|+|+|.++ +||+ |+ .|.+..+|+|
T Consensus 304 ~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~---------VVI~~~~~yd~~~g~~~~s~~~y~Q 374 (737)
T PRK02362 304 KGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARR---------VIIRDYRRYDGGAGMQPIPVLEYHQ 374 (737)
T ss_pred hCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceE---------EEEecceeecCCCCceeCCHHHHHH
Confidence 3589999999999999999999999999999999999999999987 7776 66 5889999999
Q ss_pred HhccCCCCCCe--EEEEEcC--hHHHHHHHHhhhccccceeeccccccHHHHHHhhhhhc
Q psy17912 471 NEFRIGRASIL--VSHYNKS--QQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR 526 (779)
Q Consensus 471 R~GRaGR~g~~--~~~~~~~--~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~ 526 (779)
|+|||||.|.. |.++... ..+....+..|.......+.+++......++.++.++.
T Consensus 375 m~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~ 434 (737)
T PRK02362 375 MAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIA 434 (737)
T ss_pred HhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHH
Confidence 99999999843 4444433 23345566676666666777777655556666666553
No 40
>KOG0350|consensus
Probab=100.00 E-value=9.4e-44 Score=377.03 Aligned_cols=349 Identities=22% Similarity=0.310 Sum_probs=278.3
Q ss_pred CCCCcCCCCCHHH----------HHHHHHcCCCCCCHHHHHHHHHHh---------cCCCEEEEccCCCChhHHHHHHHH
Q psy17912 127 IQHFEECNFPPYI----------MKKIYEMGFQAPTAIQAQGWPIAL---------SGCDLVAIAKTGSGKTLGYIAPAI 187 (779)
Q Consensus 127 i~~f~~~~l~~~l----------~~~l~~~g~~~p~~~Q~~~i~~il---------~g~dvii~apTGsGKTl~~~lp~l 187 (779)
..-|+.+++.... .+.+.++++...+|+|..++|+++ ..+|+++.||||||||++|.+|++
T Consensus 126 lq~~s~l~~se~k~~~d~lea~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIV 205 (620)
T KOG0350|consen 126 LQIFSVLGKSEMKNLEDTLEATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIV 205 (620)
T ss_pred eeeeeccchhHHHHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHH
Confidence 3445666655444 445888999999999999999996 357999999999999999999999
Q ss_pred HHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcC-----CeEEEeChHHH
Q psy17912 188 VHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTG-----AEIVIATPGRL 262 (779)
Q Consensus 188 ~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~-----~~IiV~Tpe~L 262 (779)
+.+...+- +.-++|||+||++|+.|++++|.+++...++.|+.+.|..+.+.+...+... .||+|+|||+|
T Consensus 206 Q~L~~R~v----~~LRavVivPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRL 281 (620)
T KOG0350|consen 206 QLLSSRPV----KRLRAVVIVPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRL 281 (620)
T ss_pred HHHccCCc----cceEEEEEeeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHH
Confidence 98877532 2358999999999999999999999999999999999999888887777543 48999999999
Q ss_pred HHHHHc-CCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc----------------------------------CCCC
Q psy17912 263 IDYLEQ-GTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI----------------------------------RPDR 307 (779)
Q Consensus 263 l~~l~~-~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l----------------------------------~~~~ 307 (779)
++++.. ..+.|+.+.|+||||||+|++..|..-+..++..+ .+..
T Consensus 282 VDHl~~~k~f~Lk~LrfLVIDEADRll~qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l 361 (620)
T KOG0350|consen 282 VDHLNNTKSFDLKHLRFLVIDEADRLLDQSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPL 361 (620)
T ss_pred HHhccCCCCcchhhceEEEechHHHHHHHHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchh
Confidence 999985 55889999999999999999876554443332221 1234
Q ss_pred ceEEeeccccHHHHHHHHHhccCcEEEecCC---CCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecc
Q psy17912 308 QVLMWSATWPKEVQKLAEDFLVDYVQLNIGS---LNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVET 384 (779)
Q Consensus 308 qilllSAT~~~~v~~l~~~~l~~~~~i~i~~---~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s 384 (779)
+.+.+|||+...-.++..--+..|-...+.. ...+....+......++...+.-.+..++.. ....++|+|+++
T Consensus 362 ~kL~~satLsqdP~Kl~~l~l~~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~---~k~~r~lcf~~S 438 (620)
T KOG0350|consen 362 WKLVFSATLSQDPSKLKDLTLHIPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITS---NKLNRTLCFVNS 438 (620)
T ss_pred HhhhcchhhhcChHHHhhhhcCCCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHH---hhcceEEEEecc
Confidence 5677888876655555555555552222211 1123344455555556665666666676664 357889999999
Q ss_pred hhHHHHHHHHHH----hCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcC
Q psy17912 385 KRKADDITRSVR----NKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYK 460 (779)
Q Consensus 385 ~~~ae~L~~~L~----~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~ 460 (779)
...+..|+..|+ +..+++..+.|+++...|.+.+++|..|++.||||+++++||+|+.+++ .||+||
T Consensus 439 ~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~---------~VINYd 509 (620)
T KOG0350|consen 439 VSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVD---------NVINYD 509 (620)
T ss_pred hHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccc---------eEeecC
Confidence 999999999987 3466778899999999999999999999999999999999999999988 999999
Q ss_pred CCCCHHHHHHHhccCCCCCCeEEEEEcChHH
Q psy17912 461 ESQQKRDRVLNEFRIGRASILVSHYNKSQQE 491 (779)
Q Consensus 461 ~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e 491 (779)
+|.+...|+||+||++|+|..|++|+.-...
T Consensus 510 ~P~~~ktyVHR~GRTARAgq~G~a~tll~~~ 540 (620)
T KOG0350|consen 510 PPASDKTYVHRAGRTARAGQDGYAITLLDKH 540 (620)
T ss_pred CCchhhHHHHhhcccccccCCceEEEeeccc
Confidence 9999999999999999999999888864433
No 41
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.2e-42 Score=407.34 Aligned_cols=320 Identities=18% Similarity=0.230 Sum_probs=253.2
Q ss_pred HHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHH
Q psy17912 142 KIYE-MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETV 220 (779)
Q Consensus 142 ~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 220 (779)
.|++ +||.+|+|+|.++++.+++|+|+++++|||+|||+||++|++.. +..++||+|+++|+.|+.+.
T Consensus 4 ~l~~~fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~ 72 (591)
T TIGR01389 4 VLKRTFGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQ 72 (591)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHH
Confidence 3443 89999999999999999999999999999999999999999842 23589999999999999998
Q ss_pred HHHhcccCCceEEEEeCCCCChhhHHHh----hcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC--chH
Q psy17912 221 ANDFGSATATRVACVFGGAPKGPQVKAL----QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG--FEP 294 (779)
Q Consensus 221 ~~~~~~~~~l~v~~~~gg~~~~~~~~~l----~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~--f~~ 294 (779)
++.+ ++.+..+.++.+..+..... ....+|+++||++|........+...++++|||||||++.+|+ |++
T Consensus 73 l~~~----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 73 LRAA----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHHc----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 8875 67788888877655443322 3458999999999975444444456789999999999999986 888
Q ss_pred HHHHHHhh--cCCCCceEEeeccccHHHHHHHHHhcc--CcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHh
Q psy17912 295 QIRKIIGQ--IRPDRQVLMWSATWPKEVQKLAEDFLV--DYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQI 370 (779)
Q Consensus 295 ~l~~il~~--l~~~~qilllSAT~~~~v~~l~~~~l~--~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i 370 (779)
.+..+... ..+..+++++|||+++.+...+...+. ++..+ .... ...++... +.....+...+..++..
T Consensus 149 ~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~-~~~~---~r~nl~~~--v~~~~~~~~~l~~~l~~- 221 (591)
T TIGR01389 149 EYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEF-ITSF---DRPNLRFS--VVKKNNKQKFLLDYLKK- 221 (591)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeE-ecCC---CCCCcEEE--EEeCCCHHHHHHHHHHh-
Confidence 87776432 234667999999999998877776654 22222 2111 12233222 22233444555555543
Q ss_pred ccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccc
Q psy17912 371 GSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIG 450 (779)
Q Consensus 371 ~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~ 450 (779)
..+.++||||+|++.++.+++.|...++.+..+||+|+.++|..+++.|.+|+++|||||+++++|||+|+++
T Consensus 222 --~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~----- 294 (591)
T TIGR01389 222 --HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVR----- 294 (591)
T ss_pred --cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCC-----
Confidence 3467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHH
Q psy17912 451 RASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDR 494 (779)
Q Consensus 451 ~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~ 494 (779)
+||+|++|.++++|+||+|||||.|..+.++.....+...
T Consensus 295 ----~VI~~~~p~s~~~y~Q~~GRaGR~G~~~~~il~~~~~d~~ 334 (591)
T TIGR01389 295 ----FVIHYDMPGNLESYYQEAGRAGRDGLPAEAILLYSPADIA 334 (591)
T ss_pred ----EEEEcCCCCCHHHHhhhhccccCCCCCceEEEecCHHHHH
Confidence 9999999999999999999999999766555544444333
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=5e-42 Score=414.68 Aligned_cols=357 Identities=19% Similarity=0.189 Sum_probs=261.2
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCC-CCCCCEEEEEccCHHH
Q psy17912 135 FPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLR-SGEGPIVLVLAPTREL 213 (779)
Q Consensus 135 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~-~~~~~~vLil~Ptr~L 213 (779)
+++.+.+.+.+ +|..|+|+|.++|+.+++|+|++++||||||||++|.+|++..+....... ...++++|||+|+++|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666554 799999999999999999999999999999999999999999887532211 1346789999999999
Q ss_pred HHHHHHHHHH-------hc----ccC-CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCc--CCCCeeEE
Q psy17912 214 AQQIETVAND-------FG----SAT-ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTI--NLHRTSYL 279 (779)
Q Consensus 214 a~Q~~~~~~~-------~~----~~~-~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~--~l~~i~~l 279 (779)
+.|+++.+.+ ++ ... ++++...+|+++..+..+.+.+.++|+|+||++|..++..... .+.++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999876542 22 233 6788999999988777777777899999999999887755432 47899999
Q ss_pred EEccchhhhcCCchHHHHHHH----hhcCCCCceEEeeccccHHHHHHHHHhccC--------cEEEecCCCCCCCccce
Q psy17912 280 VLDEADRMLDMGFEPQIRKII----GQIRPDRQVLMWSATWPKEVQKLAEDFLVD--------YVQLNIGSLNPTANHNI 347 (779)
Q Consensus 280 ViDEaH~l~~~~f~~~l~~il----~~l~~~~qilllSAT~~~~v~~l~~~~l~~--------~~~i~i~~~~~~~~~~i 347 (779)
||||||.+.+..+...+...+ ....+..|++++|||+++. ..++ .++.. ++.+...... ....+
T Consensus 177 VIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~~va-~~L~~~~~~~~~r~~~iv~~~~~--k~~~i 252 (876)
T PRK13767 177 IVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-EEVA-KFLVGYEDDGEPRDCEIVDARFV--KPFDI 252 (876)
T ss_pred EEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-HHHH-HHhcCccccCCCCceEEEccCCC--ccceE
Confidence 999999999776655544443 3334678999999999762 2333 22221 1222111110 00011
Q ss_pred EEEEE-----eccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC------CCeEEEEcCCCCHHHHHH
Q psy17912 348 VQIVD-----VCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK------GWAAVAIHGNKSQQERDR 416 (779)
Q Consensus 348 ~~~~~-----~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~------g~~v~~ihg~~~~~eR~~ 416 (779)
..... ..........+...+..+.. ..+++||||+|+..|+.++..|++. +..+..+||++++++|..
T Consensus 253 ~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~-~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ 331 (876)
T PRK13767 253 KVISPVDDLIHTPAEEISEALYETLHELIK-EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLE 331 (876)
T ss_pred EEeccCccccccccchhHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHH
Confidence 10000 01111122233344443322 3578999999999999999999873 467999999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC---CeEEEEEcChHHHH
Q psy17912 417 VLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS---ILVSHYNKSQQERD 493 (779)
Q Consensus 417 il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g---~~~~~~~~~~~e~~ 493 (779)
+++.|++|+++|||||+++++|||+|.++ +||+|+.|.+..+|+||+||+||.+ ..+.++.....+-.
T Consensus 332 ve~~fk~G~i~vLVaTs~Le~GIDip~Vd---------~VI~~~~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~~~~l~ 402 (876)
T PRK13767 332 VEEKLKRGELKVVVSSTSLELGIDIGYID---------LVVLLGSPKSVSRLLQRIGRAGHRLGEVSKGRIIVVDRDDLV 402 (876)
T ss_pred HHHHHHcCCCeEEEECChHHhcCCCCCCc---------EEEEeCCCCCHHHHHHhcccCCCCCCCCCcEEEEEcCchhHH
Confidence 99999999999999999999999999998 9999999999999999999999874 34666665544432
Q ss_pred H---HHHhhhccccce
Q psy17912 494 R---VLNEFRIGRASI 506 (779)
Q Consensus 494 ~---~l~e~~~~~~~i 506 (779)
. +.+.+..+....
T Consensus 403 e~~~~~~~~~~~~ie~ 418 (876)
T PRK13767 403 ECAVLLKKAREGKIDR 418 (876)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 2 344455444443
No 43
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=3.4e-42 Score=411.28 Aligned_cols=373 Identities=18% Similarity=0.194 Sum_probs=276.8
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE
Q psy17912 129 HFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPI-ALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL 207 (779)
Q Consensus 129 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil 207 (779)
+|+++++++.+.+.+.+.||.+|+|+|.++++. +++|+|+++++|||||||++|.+|++.++... +.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~-------~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLRE-------GGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhc-------CCeEEEE
Confidence 577889999999999999999999999999986 78999999999999999999999999887642 4589999
Q ss_pred ccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhh
Q psy17912 208 APTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRM 287 (779)
Q Consensus 208 ~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l 287 (779)
+|+++|+.|+++.+..+. ..++++..++|+.+.... ....++|+|+||+++..++......++++++|||||+|.+
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~---~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE---WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh---hhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999998864 468899999998765432 2245899999999999988766667889999999999999
Q ss_pred hcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccce-EEEEEeccccc--h-hHHH
Q psy17912 288 LDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNI-VQIVDVCQEHE--K-DYKL 363 (779)
Q Consensus 288 ~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i-~~~~~~~~~~~--k-~~~L 363 (779)
.+.++...+..++..+....|++++|||+++. ..+. .++........ .........+ .+......... + ...+
T Consensus 151 ~~~~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la-~wl~~~~~~~~-~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~ 227 (720)
T PRK00254 151 GSYDRGATLEMILTHMLGRAQILGLSATVGNA-EELA-EWLNAELVVSD-WRPVKLRKGVFYQGFLFWEDGKIERFPNSW 227 (720)
T ss_pred CCccchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHH-HHhCCccccCC-CCCCcceeeEecCCeeeccCcchhcchHHH
Confidence 99889999999999998899999999999763 4444 35443221110 0000000011 11111111110 1 1122
Q ss_pred HHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC---------------------------------CCeEEEEcCCCC
Q psy17912 364 QGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK---------------------------------GWAAVAIHGNKS 410 (779)
Q Consensus 364 ~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~---------------------------------g~~v~~ihg~~~ 410 (779)
..++..... .++++||||+|++.|+.++..|... ...+.++||+|+
T Consensus 228 ~~~~~~~i~-~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~ 306 (720)
T PRK00254 228 ESLVYDAVK-KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLG 306 (720)
T ss_pred HHHHHHHHH-hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCC
Confidence 233332222 3678999999999999888777421 235899999999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEE-------cCCCC-CHHHHHHHhccCCCCC--C
Q psy17912 411 QQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQ-------YKESQ-QKRDRVLNEFRIGRAS--I 480 (779)
Q Consensus 411 ~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~-------y~~p~-s~~~yiQR~GRaGR~g--~ 480 (779)
+++|..+++.|++|.++|||||+++++|+|+|.++ +||. |+.|. +..+|+||+|||||.| .
T Consensus 307 ~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~---------vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~ 377 (720)
T PRK00254 307 RTERVLIEDAFREGLIKVITATPTLSAGINLPAFR---------VIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDE 377 (720)
T ss_pred HHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceE---------EEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCC
Confidence 99999999999999999999999999999999987 5563 45443 5789999999999976 3
Q ss_pred eEEEEEcCh-HHHHHHHHhhhccccceeeccccccHHHHHHhhhhh
Q psy17912 481 LVSHYNKSQ-QERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 525 (779)
Q Consensus 481 ~~~~~~~~~-~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~ 525 (779)
.|.++.... .+....++.|..+....+.+....+...++.++.+.
T Consensus 378 ~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i 423 (720)
T PRK00254 378 VGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALI 423 (720)
T ss_pred CceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHH
Confidence 343333332 222345667766665556666655555566666555
No 44
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.8e-42 Score=384.41 Aligned_cols=323 Identities=22% Similarity=0.261 Sum_probs=258.2
Q ss_pred HHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHH
Q psy17912 141 KKIYE-MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIET 219 (779)
Q Consensus 141 ~~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~ 219 (779)
..|+. +||..++|-|.++|..+++++|+++.+|||+|||+||++|++.. .| .+|||+|..+|+.++.+
T Consensus 7 ~~L~~~fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~----------~G-~TLVVSPLiSLM~DQV~ 75 (590)
T COG0514 7 QVLKQVFGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL----------EG-LTLVVSPLISLMKDQVD 75 (590)
T ss_pred HHHHHHhCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc----------CC-CEEEECchHHHHHHHHH
Confidence 34543 79999999999999999999999999999999999999999964 12 68999999999999999
Q ss_pred HHHHhcccCCceEEEEeCCCCChhhHHHh---h-cCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC--ch
Q psy17912 220 VANDFGSATATRVACVFGGAPKGPQVKAL---Q-TGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG--FE 293 (779)
Q Consensus 220 ~~~~~~~~~~l~v~~~~gg~~~~~~~~~l---~-~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~--f~ 293 (779)
.++.. |+.+..+.+..+..+....+ . ...++++.+||+|..--..+.+.--.+.++|||||||+++|| |+
T Consensus 76 ~l~~~----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFR 151 (590)
T COG0514 76 QLEAA----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFR 151 (590)
T ss_pred HHHHc----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccC
Confidence 99887 68888888876665554333 2 247999999999976544444446678999999999999997 99
Q ss_pred HHHHHHHhhc--CCCCceEEeeccccHHHHHHHHHhccC-cEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHh
Q psy17912 294 PQIRKIIGQI--RPDRQVLMWSATWPKEVQKLAEDFLVD-YVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQI 370 (779)
Q Consensus 294 ~~l~~il~~l--~~~~qilllSAT~~~~v~~l~~~~l~~-~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i 370 (779)
+.|..+-... -++.+++++|||.++.++..+...+.. ...+.+...+ .+|+...+.... +....+. ++...
T Consensus 152 P~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfd---RpNi~~~v~~~~--~~~~q~~-fi~~~ 225 (590)
T COG0514 152 PDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFD---RPNLALKVVEKG--EPSDQLA-FLATV 225 (590)
T ss_pred HhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCC---Cchhhhhhhhcc--cHHHHHH-HHHhh
Confidence 9999884432 358999999999999998888776643 2233333333 223222221111 1122222 33222
Q ss_pred ccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccc
Q psy17912 371 GSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIG 450 (779)
Q Consensus 371 ~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~ 450 (779)
.....++.||||.|++.++.+++.|...|+.+..|||||+.++|+.+.+.|..++.+|+|||.++++|||.|+|+
T Consensus 226 ~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVR----- 300 (590)
T COG0514 226 LPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVR----- 300 (590)
T ss_pred ccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCce-----
Confidence 244577899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHH
Q psy17912 451 RASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERD 493 (779)
Q Consensus 451 ~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~ 493 (779)
+||||++|.++++|+|.+|||||+|....++....++..
T Consensus 301 ----fViH~~lP~s~EsYyQE~GRAGRDG~~a~aill~~~~D~ 339 (590)
T COG0514 301 ----FVIHYDLPGSIESYYQETGRAGRDGLPAEAILLYSPEDI 339 (590)
T ss_pred ----EEEEecCCCCHHHHHHHHhhccCCCCcceEEEeeccccH
Confidence 999999999999999999999999977766665554443
No 45
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.4e-40 Score=395.53 Aligned_cols=368 Identities=15% Similarity=0.162 Sum_probs=266.2
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc
Q psy17912 129 HFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA 208 (779)
Q Consensus 129 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~ 208 (779)
.|++++|++.+.+.+.+.+|. |+|+|.++++.+.+++|+++++|||||||+++.++++..+.. +.++||++
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 467889999999999988887 999999999999999999999999999999999999987754 35799999
Q ss_pred cCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhh
Q psy17912 209 PTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRML 288 (779)
Q Consensus 209 Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~ 288 (779)
|+++||.|+++.++++. ..++++...+|+...... ..+.++|+|+||+++..++.+....+.++++||+||||++.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999998864 468888888887765332 22457999999999999887766668899999999999999
Q ss_pred cCCchHHHHHHHhh---cCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEE-EEecccc-chhHHH
Q psy17912 289 DMGFEPQIRKIIGQ---IRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQI-VDVCQEH-EKDYKL 363 (779)
Q Consensus 289 ~~~f~~~l~~il~~---l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~-~~~~~~~-~k~~~L 363 (779)
+.++...++.++.. ++++.|++++|||+++. .++.. ++...... ...........+... ....... .....+
T Consensus 149 d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~-wl~~~~~~-~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~ 225 (674)
T PRK01172 149 DEDRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQ-WLNASLIK-SNFRPVPLKLGILYRKRLILDGYERSQVDI 225 (674)
T ss_pred CCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHH-HhCCCccC-CCCCCCCeEEEEEecCeeeecccccccccH
Confidence 88888777777554 45789999999999763 34443 44322111 000000000000000 0001111 111123
Q ss_pred HHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC-------------------------CCeEEEEcCCCCHHHHHHHH
Q psy17912 364 QGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK-------------------------GWAAVAIHGNKSQQERDRVL 418 (779)
Q Consensus 364 ~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~-------------------------g~~v~~ihg~~~~~eR~~il 418 (779)
..++.... ..++++||||++++.|+.++..|... ...+.++||+|++++|..++
T Consensus 226 ~~~i~~~~-~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve 304 (674)
T PRK01172 226 NSLIKETV-NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIE 304 (674)
T ss_pred HHHHHHHH-hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHH
Confidence 34444432 24689999999999999999998653 12478899999999999999
Q ss_pred HHHhcCCCcEEEEecccccccccCcccccccccceeEEEE--------cCCCCCHHHHHHHhccCCCCCC--eE--EEEE
Q psy17912 419 NEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQ--------YKESQQKRDRVLNEFRIGRASI--LV--SHYN 486 (779)
Q Consensus 419 ~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~--------y~~p~s~~~yiQR~GRaGR~g~--~~--~~~~ 486 (779)
+.|++|.++|||||+++++|+|+|... +||. +..|.+..+|.||+|||||.|. .| +++.
T Consensus 305 ~~f~~g~i~VLvaT~~la~Gvnipa~~---------VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~ 375 (674)
T PRK01172 305 EMFRNRYIKVIVATPTLAAGVNLPARL---------VIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYA 375 (674)
T ss_pred HHHHcCCCeEEEecchhhccCCCcceE---------EEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEe
Confidence 999999999999999999999999754 3332 1236689999999999999983 32 3333
Q ss_pred cChHHHHHHHHhhhccccceeeccccccHHHHHHhhh
Q psy17912 487 KSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLN 523 (779)
Q Consensus 487 ~~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~ 523 (779)
.+. +....+.+|..+....+.++.......+..++.
T Consensus 376 ~~~-~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~ 411 (674)
T PRK01172 376 ASP-ASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLA 411 (674)
T ss_pred cCc-ccHHHHHHHHcCCCCceeecCCCcccHHHHHHH
Confidence 332 323445666555666666666544333333333
No 46
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=9.4e-40 Score=380.28 Aligned_cols=307 Identities=17% Similarity=0.166 Sum_probs=240.7
Q ss_pred cCCCCCCHHHHHHHHHHhcCC-CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEE-EccCHHHHHHHHHHHHH
Q psy17912 146 MGFQAPTAIQAQGWPIALSGC-DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLV-LAPTRELAQQIETVAND 223 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g~-dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLi-l~Ptr~La~Q~~~~~~~ 223 (779)
.||. |+|+|.++++.+++|+ ++++.+|||||||.++.++++... . ....|+.|| ++|||+|+.|+++.+++
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~~-~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAVE-I-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhcccc-c-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 5888 9999999999999998 577789999999997765555321 1 123445555 77999999999999999
Q ss_pred hcccC-----------------------CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCc---------
Q psy17912 224 FGSAT-----------------------ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTI--------- 271 (779)
Q Consensus 224 ~~~~~-----------------------~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~--------- 271 (779)
+++.+ ++++..++||.+...+...+..+++|||+|+ +++.+..+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 88754 4888999999999999999999999999996 55544443
Q ss_pred -------CCCCeeEEEEccchhhhcCCchHHHHHHHhhc--CCC---CceEEeeccccHHHHHHHHHhccCcEEEecCCC
Q psy17912 272 -------NLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI--RPD---RQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSL 339 (779)
Q Consensus 272 -------~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l--~~~---~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~ 339 (779)
.+..+++||||||| ++++|...+..|+..+ ++. +|+++||||+|.++..+...++.++..+.+...
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~ 238 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKK 238 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccc
Confidence 26789999999999 6788999999999964 332 699999999999888888888777766655443
Q ss_pred CCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHH----
Q psy17912 340 NPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERD---- 415 (779)
Q Consensus 340 ~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~---- 415 (779)
.. ....+.+.+ ......+...+...+..+.....+++||||+|++.|+.+++.|++.++ ..+||+|++.+|.
T Consensus 239 ~l-~a~ki~q~v-~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~~~~~ 314 (844)
T TIGR02621 239 RL-AAKKIVKLV-PPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERDDLVK 314 (844)
T ss_pred cc-cccceEEEE-ecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHhhHHH
Confidence 32 223344432 223333443334333333334568899999999999999999998887 8999999999999
Q ss_pred -HHHHHHhc----CC-------CcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCe
Q psy17912 416 -RVLNEFRI----GR-------ASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASIL 481 (779)
Q Consensus 416 -~il~~F~~----G~-------~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~ 481 (779)
.+++.|++ |+ .+|||||+++++|||++. + +||++..| .+.|+||+||+||.|..
T Consensus 315 ~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d---------~VI~d~aP--~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 315 KEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-D---------HLVCDLAP--FESMQQRFGRVNRFGEL 380 (844)
T ss_pred HHHHHHHhccccccccccccccceEEeccchhhhcccCCc-c---------eEEECCCC--HHHHHHHhcccCCCCCC
Confidence 88999987 44 689999999999999986 4 77777766 68999999999999853
No 47
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=2.6e-39 Score=374.64 Aligned_cols=363 Identities=20% Similarity=0.180 Sum_probs=279.9
Q ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHH
Q psy17912 134 NFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTREL 213 (779)
Q Consensus 134 ~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~L 213 (779)
-|++.+.+.+... |.+|||.|.+|||.+.+|+|++++||||||||+++.+|++..+..........+..||||+|.++|
T Consensus 7 ~l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkAL 85 (814)
T COG1201 7 ILDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKAL 85 (814)
T ss_pred hcCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHH
Confidence 3788899998877 999999999999999999999999999999999999999999988642233456789999999999
Q ss_pred HHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC--cCCCCeeEEEEccchhhhcCC
Q psy17912 214 AQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT--INLHRTSYLVLDEADRMLDMG 291 (779)
Q Consensus 214 a~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~--~~l~~i~~lViDEaH~l~~~~ 291 (779)
.+++...+...+..+|+.+.+-+|+++..+..+...+.++|+|+|||.|.-++.... -.|.++.+|||||+|.+.+..
T Consensus 86 n~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sK 165 (814)
T COG1201 86 NNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESK 165 (814)
T ss_pred HHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccc
Confidence 999999999999999999999999999999999999999999999999988876533 358899999999999888765
Q ss_pred chHH----HHHHHhhcCCCCceEEeeccccHHHHHHHHHhcc-C--cEEEecCCCCCCCccceEEEEEecc---ccchhH
Q psy17912 292 FEPQ----IRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLV-D--YVQLNIGSLNPTANHNIVQIVDVCQ---EHEKDY 361 (779)
Q Consensus 292 f~~~----l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~-~--~~~i~i~~~~~~~~~~i~~~~~~~~---~~~k~~ 361 (779)
.+.+ ++++..... +.|.+++|||..+. .. +.+|+. . +..+...... .+..+.-...... ......
T Consensus 166 RG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~~-~~-varfL~g~~~~~~Iv~~~~~--k~~~i~v~~p~~~~~~~~~~~~ 240 (814)
T COG1201 166 RGVQLALSLERLRELAG-DFQRIGLSATVGPP-EE-VAKFLVGFGDPCEIVDVSAA--KKLEIKVISPVEDLIYDEELWA 240 (814)
T ss_pred cchhhhhhHHHHHhhCc-ccEEEeehhccCCH-HH-HHHHhcCCCCceEEEEcccC--CcceEEEEecCCccccccchhH
Confidence 4444 333333333 89999999998643 23 333442 2 3333332222 1112221111111 011122
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCC-CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKG-WAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQER 440 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g-~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GID 440 (779)
.+...+.++.+ ....+|||+||+..++.++..|++.+ ..+..+||.++.++|..+.++|++|+++++|||+.++-|||
T Consensus 241 ~~~~~i~~~v~-~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGID 319 (814)
T COG1201 241 ALYERIAELVK-KHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGID 319 (814)
T ss_pred HHHHHHHHHHh-hcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccc
Confidence 23333333322 24589999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred cCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC---CeEEEEEcChHHHHH---HHHhhhccccceeecccc
Q psy17912 441 DRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS---ILVSHYNKSQQERDR---VLNEFRIGRASILVSHYN 512 (779)
Q Consensus 441 ip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g---~~~~~~~~~~~e~~~---~l~e~~~~~~~il~~~~~ 512 (779)
+..++ +||+|..|.++..++||+||+|+.- ..++++..+..+... ..+....++..-+.-..+
T Consensus 320 iG~vd---------lVIq~~SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~ 388 (814)
T COG1201 320 IGDID---------LVIQLGSPKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKN 388 (814)
T ss_pred cCCce---------EEEEeCCcHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCc
Confidence 99998 9999999999999999999999754 445666666444332 445556666553333333
No 48
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.3e-38 Score=379.03 Aligned_cols=317 Identities=18% Similarity=0.142 Sum_probs=249.7
Q ss_pred CHHHHHHHHH-cCCCCCCHHHHHHHHHHhcC------CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc
Q psy17912 136 PPYIMKKIYE-MGFQAPTAIQAQGWPIALSG------CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA 208 (779)
Q Consensus 136 ~~~l~~~l~~-~g~~~p~~~Q~~~i~~il~g------~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~ 208 (779)
+..+.+.+.+ ++| +|||+|.++|+.++++ +|++++||||+|||.+|++|++..+.. +++++|++
T Consensus 437 ~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlvLv 507 (926)
T TIGR00580 437 DLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAVLV 507 (926)
T ss_pred CHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEEEe
Confidence 4455555554 678 5999999999999875 799999999999999999999987754 46899999
Q ss_pred cCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHH---hhc-CCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccc
Q psy17912 209 PTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKA---LQT-GAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEA 284 (779)
Q Consensus 209 Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~---l~~-~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEa 284 (779)
||++||.|+++.++++....++++..++|+.+..+.... +.. .++|+|+||. ++ ...+.++++++|||||+
T Consensus 508 PT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll-~~~v~f~~L~llVIDEa 582 (926)
T TIGR00580 508 PTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LL-QKDVKFKDLGLLIIDEE 582 (926)
T ss_pred CcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----Hh-hCCCCcccCCEEEeecc
Confidence 999999999999999888888999889888765444333 333 4899999994 22 34567899999999999
Q ss_pred hhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHH
Q psy17912 285 DRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQ 364 (779)
Q Consensus 285 H~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 364 (779)
|+ |.......+..++++.++++||||+++....+......++..+...+.. ...+...+... .......
T Consensus 583 hr-----fgv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~---~~~~i~~ 651 (926)
T TIGR00580 583 QR-----FGVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEY---DPELVRE 651 (926)
T ss_pred cc-----cchhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEec---CHHHHHH
Confidence 99 3445566677777889999999998776655555555566555443322 22233332211 1111122
Q ss_pred HHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccC
Q psy17912 365 GLLSQIGSERTSKTIIFVETKRKADDITRSVRNK--GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDR 442 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~--g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip 442 (779)
.++..+. .+++++|||++++.++.+++.|++. ++++..+||+|++.+|++++++|++|+.+|||||+++++|||+|
T Consensus 652 ~i~~el~--~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp 729 (926)
T TIGR00580 652 AIRRELL--RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIP 729 (926)
T ss_pred HHHHHHH--cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccc
Confidence 2333332 4688999999999999999999984 78999999999999999999999999999999999999999999
Q ss_pred cccccccccceeEEEEcCCCC-CHHHHHHHhccCCCCCCeEEEEEcC
Q psy17912 443 VLNEFRIGRASILVSQYKESQ-QKRDRVLNEFRIGRASILVSHYNKS 488 (779)
Q Consensus 443 ~v~~~~~~~~~~~VI~y~~p~-s~~~yiQR~GRaGR~g~~~~~~~~~ 488 (779)
+++ +||+++.|. ...+|+||+||+||.|..+++|...
T Consensus 730 ~v~---------~VIi~~a~~~gls~l~Qr~GRvGR~g~~g~aill~ 767 (926)
T TIGR00580 730 NAN---------TIIIERADKFGLAQLYQLRGRVGRSKKKAYAYLLY 767 (926)
T ss_pred cCC---------EEEEecCCCCCHHHHHHHhcCCCCCCCCeEEEEEE
Confidence 999 889888865 6889999999999999888887754
No 49
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=5.3e-38 Score=383.35 Aligned_cols=315 Identities=20% Similarity=0.153 Sum_probs=248.8
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcC------CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCH
Q psy17912 138 YIMKKIYEMGFQAPTAIQAQGWPIALSG------CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTR 211 (779)
Q Consensus 138 ~l~~~l~~~g~~~p~~~Q~~~i~~il~g------~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr 211 (779)
...+....+.| .||+.|.++|+.++++ +|++++++||+|||.+|+.+++..+.. +++++||+||+
T Consensus 589 ~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~--------g~qvlvLvPT~ 659 (1147)
T PRK10689 589 QYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN--------HKQVAVLVPTT 659 (1147)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc--------CCeEEEEeCcH
Confidence 33444456777 7999999999999987 899999999999999999888766542 66899999999
Q ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhh----cCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhh
Q psy17912 212 ELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQ----TGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRM 287 (779)
Q Consensus 212 ~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~----~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l 287 (779)
+||.|+++.+++.....++++.+++|+.+..++...+. ..++|+|+||+.+ ...+.+.++++|||||+|++
T Consensus 660 eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL-----~~~v~~~~L~lLVIDEahrf 734 (1147)
T PRK10689 660 LLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL-----QSDVKWKDLGLLIVDEEHRF 734 (1147)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH-----hCCCCHhhCCEEEEechhhc
Confidence 99999999999877777888888988887766654432 3589999999633 23456789999999999996
Q ss_pred hcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHH
Q psy17912 288 LDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLL 367 (779)
Q Consensus 288 ~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 367 (779)
++ .....++.++++.|+++||||+++....++...+.++..+...... ...+...+.... .......++
T Consensus 735 ---G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~---r~~v~~~~~~~~---~~~~k~~il 803 (1147)
T PRK10689 735 ---GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR---RLAVKTFVREYD---SLVVREAIL 803 (1147)
T ss_pred ---ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC---CCCceEEEEecC---cHHHHHHHH
Confidence 22 2345567778899999999998888777777778888776553332 123333322211 112223344
Q ss_pred HHhccCCCCcEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccc
Q psy17912 368 SQIGSERTSKTIIFVETKRKADDITRSVRNK--GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLN 445 (779)
Q Consensus 368 ~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~--g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~ 445 (779)
..+. .+++++|||++++.++.+++.|.+. +..+..+||+|++.+|++++++|++|+.+|||||+++++|||+|+++
T Consensus 804 ~el~--r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~ 881 (1147)
T PRK10689 804 REIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTAN 881 (1147)
T ss_pred HHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCC
Confidence 4443 3578999999999999999999987 78899999999999999999999999999999999999999999998
Q ss_pred ccccccceeEEEEcCC-CCCHHHHHHHhccCCCCCCeEEEEEcC
Q psy17912 446 EFRIGRASILVSQYKE-SQQKRDRVLNEFRIGRASILVSHYNKS 488 (779)
Q Consensus 446 ~~~~~~~~~~VI~y~~-p~s~~~yiQR~GRaGR~g~~~~~~~~~ 488 (779)
+||..+. ..++.+|+||+||+||.|..+++|...
T Consensus 882 ---------~VIi~~ad~fglaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 882 ---------TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred ---------EEEEecCCCCCHHHHHHHhhccCCCCCceEEEEEe
Confidence 6664333 345678999999999999888777754
No 50
>KOG0329|consensus
Probab=100.00 E-value=2.3e-39 Score=317.15 Aligned_cols=315 Identities=26% Similarity=0.404 Sum_probs=280.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEE
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVL 205 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vL 205 (779)
-...|.++-|.|++++++..+||+.|+.+|.++||...-|.|+++.|..|.|||.+|.+..++.+..-. ....+|
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv~-----g~vsvl 114 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVD-----GQVSVL 114 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCCC-----CeEEEE
Confidence 345688888999999999999999999999999999999999999999999999999999998775532 245799
Q ss_pred EEccCHHHHHHHHHHHHHhcccC-CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccc
Q psy17912 206 VLAPTRELAQQIETVANDFGSAT-ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEA 284 (779)
Q Consensus 206 il~Ptr~La~Q~~~~~~~~~~~~-~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEa 284 (779)
++|.||+||-|+..+..+|.+.+ +.++.+.+||.....+...+.+.++|+|+||++++.+.....++++.+.++|+|||
T Consensus 115 vmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEc 194 (387)
T KOG0329|consen 115 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDEC 194 (387)
T ss_pred EEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhH
Confidence 99999999999999999888765 68999999999998888888888999999999999999999999999999999999
Q ss_pred hhhhcC-CchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHH
Q psy17912 285 DRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKL 363 (779)
Q Consensus 285 H~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L 363 (779)
|.|+++ +.+..+..|++..+.+.|++++|||++++++...++|+.+|..+.++.......+.++|++....+.+|..++
T Consensus 195 dkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl 274 (387)
T KOG0329|consen 195 DKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKL 274 (387)
T ss_pred HHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhh
Confidence 988875 4678899999999999999999999999999999999999999999887767778888888889999999999
Q ss_pred HHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCc
Q psy17912 364 QGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRV 443 (779)
Q Consensus 364 ~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~ 443 (779)
.++|..+ .-.+++||+.+... | . | ..+ ||||+++++|+|+..
T Consensus 275 ~dLLd~L---eFNQVvIFvKsv~R-------l-----------------------~-f---~kr-~vat~lfgrgmdier 316 (387)
T KOG0329|consen 275 NDLLDVL---EFNQVVIFVKSVQR-------L-----------------------S-F---QKR-LVATDLFGRGMDIER 316 (387)
T ss_pred hhhhhhh---hhcceeEeeehhhh-------h-----------------------h-h---hhh-hHHhhhhccccCccc
Confidence 9999877 35689999988665 1 0 3 223 999999999999999
Q ss_pred ccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHH
Q psy17912 444 LNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQER 492 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~ 492 (779)
++ +|+|||+|.+...|+||.|||||.|..+.+++....+.
T Consensus 317 vN---------i~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~ 356 (387)
T KOG0329|consen 317 VN---------IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEN 356 (387)
T ss_pred ce---------eeeccCCCCCchHHHHHhhhhhccccccceeehhcchh
Confidence 98 99999999999999999999999999887776544443
No 51
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=6.9e-37 Score=361.72 Aligned_cols=317 Identities=18% Similarity=0.188 Sum_probs=238.5
Q ss_pred HHHHHHHH-HcCCCCCCHHHHHHHHHHhcC------CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEcc
Q psy17912 137 PYIMKKIY-EMGFQAPTAIQAQGWPIALSG------CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAP 209 (779)
Q Consensus 137 ~~l~~~l~-~~g~~~p~~~Q~~~i~~il~g------~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~P 209 (779)
..+.+.+. .++| +||++|+++++.+.++ .+++++||||||||++|++|++..+.. +++++|++|
T Consensus 248 ~~~~~~~~~~l~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~--------g~q~lilaP 318 (681)
T PRK10917 248 GELLKKFLASLPF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEA--------GYQAALMAP 318 (681)
T ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEec
Confidence 34444444 4666 6999999999999876 489999999999999999999987753 668999999
Q ss_pred CHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH---HHhhc-CCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch
Q psy17912 210 TRELAQQIETVANDFGSATATRVACVFGGAPKGPQV---KALQT-GAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD 285 (779)
Q Consensus 210 tr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~---~~l~~-~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH 285 (779)
|++||.|+++.++++....++++..++|+.+..+.. ..+.. .++|+|+||+.+.+ .+.+.++++|||||+|
T Consensus 319 T~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~H 393 (681)
T PRK10917 319 TEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQH 393 (681)
T ss_pred cHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechh
Confidence 999999999999999988899999999998754433 33433 48999999976643 3458899999999999
Q ss_pred hhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHH
Q psy17912 286 RMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQG 365 (779)
Q Consensus 286 ~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 365 (779)
++. ......+.......++++||||+.+....+......+... +.... .....+...+. .. .+...+..
T Consensus 394 rfg-----~~qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~--i~~~p-~~r~~i~~~~~--~~-~~~~~~~~ 462 (681)
T PRK10917 394 RFG-----VEQRLALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSV--IDELP-PGRKPITTVVI--PD-SRRDEVYE 462 (681)
T ss_pred hhh-----HHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEE--EecCC-CCCCCcEEEEe--Cc-ccHHHHHH
Confidence 853 2333344444556899999999866544333211122222 22111 11223333322 22 22233434
Q ss_pred HHHHhccCCCCcEEEEecch--------hHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q psy17912 366 LLSQIGSERTSKTIIFVETK--------RKADDITRSVRNK--GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK 435 (779)
Q Consensus 366 ll~~i~~~~~~kvLVF~~s~--------~~ae~L~~~L~~~--g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~ 435 (779)
.+.... ..+.+++|||+.. ..++.+++.|.+. ++++..+||+|++.+|+.+++.|++|+.+|||||+++
T Consensus 463 ~i~~~~-~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vi 541 (681)
T PRK10917 463 RIREEI-AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVI 541 (681)
T ss_pred HHHHHH-HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcce
Confidence 443322 3578999999954 4566778888765 5789999999999999999999999999999999999
Q ss_pred ccccccCcccccccccceeEEEEcCCCC-CHHHHHHHhccCCCCCCeEEEEEcC
Q psy17912 436 SQQERDRVLNEFRIGRASILVSQYKESQ-QKRDRVLNEFRIGRASILVSHYNKS 488 (779)
Q Consensus 436 ~~GIDip~v~~~~~~~~~~~VI~y~~p~-s~~~yiQR~GRaGR~g~~~~~~~~~ 488 (779)
++|+|+|+++ +||+|+.|. ...+++||+||+||.|..++++...
T Consensus 542 e~GiDip~v~---------~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~ill~ 586 (681)
T PRK10917 542 EVGVDVPNAT---------VMVIENAERFGLAQLHQLRGRVGRGAAQSYCVLLY 586 (681)
T ss_pred eeCcccCCCc---------EEEEeCCCCCCHHHHHHHhhcccCCCCceEEEEEE
Confidence 9999999998 999999986 6889999999999999888777654
No 52
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=6.3e-37 Score=375.22 Aligned_cols=369 Identities=17% Similarity=0.185 Sum_probs=254.0
Q ss_pred EEccCCCChhHHHHHHHHHHHhccCCC-----CCCCCCEEEEEccCHHHHHHHHHHHHHhc------------ccCCceE
Q psy17912 170 AIAKTGSGKTLGYIAPAIVHVNSQRPL-----RSGEGPIVLVLAPTRELAQQIETVANDFG------------SATATRV 232 (779)
Q Consensus 170 i~apTGsGKTl~~~lp~l~~l~~~~~~-----~~~~~~~vLil~Ptr~La~Q~~~~~~~~~------------~~~~l~v 232 (779)
|++|||||||++|.+|++..+...... ...++.++|||+|+++|+.|+.+.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999998764311 12346799999999999999999886421 1347899
Q ss_pred EEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC-cCCCCeeEEEEccchhhhcCCch----HHHHHHHhhcCCCC
Q psy17912 233 ACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT-INLHRTSYLVLDEADRMLDMGFE----PQIRKIIGQIRPDR 307 (779)
Q Consensus 233 ~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~-~~l~~i~~lViDEaH~l~~~~f~----~~l~~il~~l~~~~ 307 (779)
...+|+++..++.+.+.+.++|+|+|||+|..++.+.. ..++++++|||||+|.+.+..+. ..+.++...++.+.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 99999999888877777789999999999998876532 46899999999999999876443 44555555566788
Q ss_pred ceEEeeccccHHHHHHHHHhcc--CcEEEecCCCCCCCccceEEEEEeccccch---------------------hHHHH
Q psy17912 308 QVLMWSATWPKEVQKLAEDFLV--DYVQLNIGSLNPTANHNIVQIVDVCQEHEK---------------------DYKLQ 364 (779)
Q Consensus 308 qilllSAT~~~~v~~l~~~~l~--~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k---------------------~~~L~ 364 (779)
|+|++|||+++. ++++ +|+. .++.+...... ....+...+. ..+..+ .....
T Consensus 161 QrIgLSATI~n~-eevA-~~L~g~~pv~Iv~~~~~--r~~~l~v~vp-~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~ 235 (1490)
T PRK09751 161 QRIGLSATVRSA-SDVA-AFLGGDRPVTVVNPPAM--RHPQIRIVVP-VANMDDVSSVASGTGEDSHAGREGSIWPYIET 235 (1490)
T ss_pred eEEEEEeeCCCH-HHHH-HHhcCCCCEEEECCCCC--cccceEEEEe-cCchhhccccccccccccchhhhhhhhHHHHH
Confidence 999999999873 4544 4553 34444322111 1112221111 111000 01112
Q ss_pred HHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCC---------------------------------CeEEEEcCCCCH
Q psy17912 365 GLLSQIGSERTSKTIIFVETKRKADDITRSVRNKG---------------------------------WAAVAIHGNKSQ 411 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g---------------------------------~~v~~ihg~~~~ 411 (779)
.++..+. ...++||||||++.|+.++..|++.. +.+..|||++++
T Consensus 236 ~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSk 313 (1490)
T PRK09751 236 GILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSK 313 (1490)
T ss_pred HHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCH
Confidence 3343332 35789999999999999999997531 226789999999
Q ss_pred HHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC--C-eEEEEEcC
Q psy17912 412 QERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS--I-LVSHYNKS 488 (779)
Q Consensus 412 ~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g--~-~~~~~~~~ 488 (779)
++|..+++.|++|++++||||+++++|||++.++ +||+|+.|.++.+|+||+||+||.. . .+.++..+
T Consensus 314 eeR~~IE~~fK~G~LrvLVATssLELGIDIg~VD---------lVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~~ 384 (1490)
T PRK09751 314 EQRAITEQALKSGELRCVVATSSLELGIDMGAVD---------LVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRT 384 (1490)
T ss_pred HHHHHHHHHHHhCCceEEEeCcHHHccCCcccCC---------EEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeCc
Confidence 9999999999999999999999999999999998 9999999999999999999999963 2 23333333
Q ss_pred hHHHHH---HHHhhhccccceeeccccccHHHHHHhhhhhcccccchh---------hhcccccHHHHHHHHHHhhhc
Q psy17912 489 QQERDR---VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASIL---------VSHYNKSQQERDRVLNEFRIG 554 (779)
Q Consensus 489 ~~e~~~---~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~ 554 (779)
..+-.. +++.+..+..+.+....+.-.-..+.++.....+.-+.- ..+.+.+.++-+.+|+-.-.+
T Consensus 385 r~dlle~~~~ve~~l~g~iE~~~~p~nplDVLaqqiva~a~~~~~~~d~l~~~vrra~pf~~L~~~~f~~vl~~L~~~ 462 (1490)
T PRK09751 385 RRDLVDSAVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDALQVDEWYSRVRRAAPWKDLPRRVFDATLDMLSGR 462 (1490)
T ss_pred HHHHHhhHHHHHHHhcCCCCccCCCCChHHHHHHHHHHHHhcCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHhcc
Confidence 322222 345566666555554444443333333332211111110 111334567777776654443
No 53
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.1e-36 Score=353.94 Aligned_cols=316 Identities=18% Similarity=0.188 Sum_probs=233.4
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcC------CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCH
Q psy17912 138 YIMKKIYEMGFQAPTAIQAQGWPIALSG------CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTR 211 (779)
Q Consensus 138 ~l~~~l~~~g~~~p~~~Q~~~i~~il~g------~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr 211 (779)
.+.+.+..++| +||++|+++++.++++ .+.+++||||||||++|++|++..+.. +++++|++||+
T Consensus 224 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~--------g~qvlilaPT~ 294 (630)
T TIGR00643 224 LLTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA--------GYQVALMAPTE 294 (630)
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc--------CCcEEEECCHH
Confidence 34455566788 7999999999999876 368999999999999999999987754 56899999999
Q ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH---HHhh-cCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhh
Q psy17912 212 ELAQQIETVANDFGSATATRVACVFGGAPKGPQV---KALQ-TGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRM 287 (779)
Q Consensus 212 ~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~---~~l~-~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l 287 (779)
+||.|+++.+++++...++++..++|+....+.. ..+. ..++|+|+||+.+.+ ...+.++++|||||+|++
T Consensus 295 ~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 295 ILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhc
Confidence 9999999999999988899999999998765432 2333 347999999987643 346789999999999984
Q ss_pred hcCCchHHHHHHHhhcCC---CCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHH
Q psy17912 288 LDMGFEPQIRKIIGQIRP---DRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQ 364 (779)
Q Consensus 288 ~~~~f~~~l~~il~~l~~---~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 364 (779)
.. .....+..... ..++++||||+.+....+.. ..+.....+.... .....+...+ .....+ ..+.
T Consensus 370 g~-----~qr~~l~~~~~~~~~~~~l~~SATp~prtl~l~~--~~~l~~~~i~~~p-~~r~~i~~~~--~~~~~~-~~~~ 438 (630)
T TIGR00643 370 GV-----EQRKKLREKGQGGFTPHVLVMSATPIPRTLALTV--YGDLDTSIIDELP-PGRKPITTVL--IKHDEK-DIVY 438 (630)
T ss_pred cH-----HHHHHHHHhcccCCCCCEEEEeCCCCcHHHHHHh--cCCcceeeeccCC-CCCCceEEEE--eCcchH-HHHH
Confidence 32 22222222222 67899999997654333221 1111111111111 1112233222 222222 2333
Q ss_pred HHHHHhccCCCCcEEEEecch--------hHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy17912 365 GLLSQIGSERTSKTIIFVETK--------RKADDITRSVRNK--GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYN 434 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~--------~~ae~L~~~L~~~--g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v 434 (779)
..+.... ..+.+++|||+.. ..++.+++.|... ++.+..+||+|++++|..+++.|++|+.+|||||++
T Consensus 439 ~~i~~~l-~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~v 517 (630)
T TIGR00643 439 EFIEEEI-AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTV 517 (630)
T ss_pred HHHHHHH-HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECce
Confidence 3333221 2467899999875 4566778888763 788999999999999999999999999999999999
Q ss_pred cccccccCcccccccccceeEEEEcCCCC-CHHHHHHHhccCCCCCCeEEEEEcC
Q psy17912 435 KSQQERDRVLNEFRIGRASILVSQYKESQ-QKRDRVLNEFRIGRASILVSHYNKS 488 (779)
Q Consensus 435 ~~~GIDip~v~~~~~~~~~~~VI~y~~p~-s~~~yiQR~GRaGR~g~~~~~~~~~ 488 (779)
+++|||+|+++ +||+|+.|. ...+|.||+||+||.|..+.++...
T Consensus 518 ie~GvDiP~v~---------~VIi~~~~r~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 518 IEVGVDVPNAT---------VMVIEDAERFGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred eecCcccCCCc---------EEEEeCCCcCCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 99999999998 899999886 7889999999999999888777654
No 54
>KOG0352|consensus
Probab=100.00 E-value=1e-37 Score=324.69 Aligned_cols=334 Identities=18% Similarity=0.197 Sum_probs=253.6
Q ss_pred HHHHHHHH-cCCCCC-CHHHHHHHHHHhcC-CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHH
Q psy17912 138 YIMKKIYE-MGFQAP-TAIQAQGWPIALSG-CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELA 214 (779)
Q Consensus 138 ~l~~~l~~-~g~~~p-~~~Q~~~i~~il~g-~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La 214 (779)
.+.++|++ +|+.++ ++.|.+|+..+.++ +||.+++|||+||++||++|++.+ +..+||+.|..+|+
T Consensus 6 ~VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALI 74 (641)
T KOG0352|consen 6 KVREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALI 74 (641)
T ss_pred HHHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHH
Confidence 46677776 788887 89999999998865 699999999999999999999964 33899999999999
Q ss_pred HHHHHHHHHhcccCCceEEEEeCCCCChhhHHHh------hcCCeEEEeChHHHHHHHHc----CCcCCCCeeEEEEccc
Q psy17912 215 QQIETVANDFGSATATRVACVFGGAPKGPQVKAL------QTGAEIVIATPGRLIDYLEQ----GTINLHRTSYLVLDEA 284 (779)
Q Consensus 215 ~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l------~~~~~IiV~Tpe~Ll~~l~~----~~~~l~~i~~lViDEa 284 (779)
.++.+.+..+ .+++..+.+..+..+..+.+ +....+++.|||....-.++ ...+-..+.|+|+|||
T Consensus 75 kDQiDHL~~L----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 75 KDQIDHLKRL----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHHHhc----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechh
Confidence 9999998886 44555555544444333322 23468999999986432222 2234456899999999
Q ss_pred hhhhcCC--chHHHHHH--HhhcCCCCceEEeeccccHHHHHHHHHh--ccCcEEEecCCCCCCCccceEEEEEe-cccc
Q psy17912 285 DRMLDMG--FEPQIRKI--IGQIRPDRQVLMWSATWPKEVQKLAEDF--LVDYVQLNIGSLNPTANHNIVQIVDV-CQEH 357 (779)
Q Consensus 285 H~l~~~~--f~~~l~~i--l~~l~~~~qilllSAT~~~~v~~l~~~~--l~~~~~i~i~~~~~~~~~~i~~~~~~-~~~~ 357 (779)
|++.+|| |++.+.++ ++..-++...+++|||.++.+++.+-.- +.+|+.+.-.+. ...++...+.+ ..-.
T Consensus 151 HCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~---FR~NLFYD~~~K~~I~ 227 (641)
T KOG0352|consen 151 HCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPT---FRDNLFYDNHMKSFIT 227 (641)
T ss_pred hhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcc---hhhhhhHHHHHHHHhh
Confidence 9999997 99999887 4455578999999999999998866443 456766654332 22222111000 0112
Q ss_pred chhHHHHHHHHHhcc----------CCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCc
Q psy17912 358 EKDYKLQGLLSQIGS----------ERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRAS 427 (779)
Q Consensus 358 ~k~~~L~~ll~~i~~----------~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ 427 (779)
+....|.++...... ...+..||||.|+++|++++-.|...|+++..||+|+...||.++.++|.+++..
T Consensus 228 D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~P 307 (641)
T KOG0352|consen 228 DCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIP 307 (641)
T ss_pred hHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCCCC
Confidence 233344444332211 1245689999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHh
Q psy17912 428 ILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 498 (779)
Q Consensus 428 ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e 498 (779)
|++||..+++|+|.|+|+ +|||++.|.++..|.|..|||||+|...++-.+...+..+.++-
T Consensus 308 vI~AT~SFGMGVDKp~VR---------FViHW~~~qn~AgYYQESGRAGRDGk~SyCRLYYsR~D~~~i~F 369 (641)
T KOG0352|consen 308 VIAATVSFGMGVDKPDVR---------FVIHWSPSQNLAGYYQESGRAGRDGKRSYCRLYYSRQDKNALNF 369 (641)
T ss_pred EEEEEeccccccCCccee---------EEEecCchhhhHHHHHhccccccCCCccceeeeecccchHHHHH
Confidence 999999999999999999 99999999999999999999999997776655544444444333
No 55
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.8e-36 Score=355.72 Aligned_cols=315 Identities=16% Similarity=0.153 Sum_probs=240.6
Q ss_pred HHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHH-HhcccCCceEEE
Q psy17912 156 AQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAN-DFGSATATRVAC 234 (779)
Q Consensus 156 ~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~-~~~~~~~l~v~~ 234 (779)
.+++..+.+++++|++|+||||||++|.++++.... .+++++|+.|+|++|.|+++.+. .+....+..++.
T Consensus 8 ~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy 79 (819)
T TIGR01970 8 PALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGY 79 (819)
T ss_pred HHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEE
Confidence 366677778999999999999999999999997652 24589999999999999999874 555556666666
Q ss_pred EeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch-hhhcCCchHHH-HHHHhhcCCCCceEEe
Q psy17912 235 VFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD-RMLDMGFEPQI-RKIIGQIRPDRQVLMW 312 (779)
Q Consensus 235 ~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH-~l~~~~f~~~l-~~il~~l~~~~qilll 312 (779)
..+.... .....+|+|+||++|++.+.. ...++++++|||||+| ++++.++...+ ..+...++++.|+++|
T Consensus 80 ~vr~~~~------~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlm 152 (819)
T TIGR01970 80 RVRGENK------VSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAM 152 (819)
T ss_pred EEccccc------cCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEE
Confidence 5554322 233478999999999999865 4579999999999999 68887765544 4455667889999999
Q ss_pred eccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchh-HHHHHHHHHhccCCCCcEEEEecchhHHHHH
Q psy17912 313 SATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKD-YKLQGLLSQIGSERTSKTIIFVETKRKADDI 391 (779)
Q Consensus 313 SAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~-~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L 391 (779)
|||++... +..++.++..+.+.... ..+...+......++. ..+...+..+.....+++||||+++.+++.+
T Consensus 153 SATl~~~~---l~~~l~~~~vI~~~gr~----~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l 225 (819)
T TIGR01970 153 SATLDGER---LSSLLPDAPVVESEGRS----FPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRV 225 (819)
T ss_pred eCCCCHHH---HHHHcCCCcEEEecCcc----eeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHH
Confidence 99998753 35666654444432221 1233333322222221 1222233333333468899999999999999
Q ss_pred HHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCC----
Q psy17912 392 TRSVRN---KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQ---- 464 (779)
Q Consensus 392 ~~~L~~---~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s---- 464 (779)
++.|.+ .++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|+ +||+++.|..
T Consensus 226 ~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~---------~VID~Gl~r~~~yd 296 (819)
T TIGR01970 226 QEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIR---------VVIDSGLARVARFD 296 (819)
T ss_pred HHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCce---------EEEEcCcccccccc
Confidence 999987 478999999999999999999999999999999999999999999998 9999998753
Q ss_pred --------------HHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhcc
Q psy17912 465 --------------KRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIG 502 (779)
Q Consensus 465 --------------~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~ 502 (779)
..+|+||+|||||. ..|.+|....++.+..+.++..+
T Consensus 297 ~~~g~~~L~~~~iSkasa~QR~GRAGR~-~~G~cyrL~t~~~~~~l~~~~~P 347 (819)
T TIGR01970 297 PKTGITRLETVRISQASATQRAGRAGRL-EPGVCYRLWSEEQHQRLPAQDEP 347 (819)
T ss_pred cccCCceeeEEEECHHHHHhhhhhcCCC-CCCEEEEeCCHHHHHhhhcCCCc
Confidence 35689999999999 68888887777776666666544
No 56
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=9.5e-36 Score=345.44 Aligned_cols=310 Identities=16% Similarity=0.168 Sum_probs=225.2
Q ss_pred HHHHHHHHHHhcCCCEEEEccCCCChhHH---------HHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHH
Q psy17912 153 AIQAQGWPIALSGCDLVAIAKTGSGKTLG---------YIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAND 223 (779)
Q Consensus 153 ~~Q~~~i~~il~g~dvii~apTGsGKTl~---------~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 223 (779)
.+|+++++.+++++++|++|+||||||.+ |++|.+..+.... ....+++++|++||++||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 47999999999999999999999999987 3344444432211 122356899999999999999988876
Q ss_pred hccc---CCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHH
Q psy17912 224 FGSA---TATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKII 300 (779)
Q Consensus 224 ~~~~---~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il 300 (779)
.... .+..+...+|+... .......+..+|+|+|++. ....++++++|||||||.+...+ ..+..++
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~--DllL~ll 314 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG--DIIIAVA 314 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch--hHHHHHH
Confidence 5433 36677888998763 2222223357999999752 11257889999999999877654 3445555
Q ss_pred hhcC-CCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEecc----------ccchhHHHHHHHHH
Q psy17912 301 GQIR-PDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQ----------EHEKDYKLQGLLSQ 369 (779)
Q Consensus 301 ~~l~-~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~----------~~~k~~~L~~ll~~ 369 (779)
+... ..+|+++||||++.+++.+ ..++.++..+.+... ....+.+.+.... ...+. .+...+..
T Consensus 315 k~~~~~~rq~ILmSATl~~dv~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~-~~l~~L~~ 389 (675)
T PHA02653 315 RKHIDKIRSLFLMTATLEDDRDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKK-NIVTALKK 389 (675)
T ss_pred HHhhhhcCEEEEEccCCcHhHHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHH-HHHHHHHH
Confidence 4443 3459999999999888776 578888877776432 1223443332111 11111 22233332
Q ss_pred hccCCCCcEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHH-hcCCCcEEEEecccccccccCcccc
Q psy17912 370 IGSERTSKTIIFVETKRKADDITRSVRNK--GWAAVAIHGNKSQQERDRVLNEF-RIGRASILVSQYNKSQQERDRVLNE 446 (779)
Q Consensus 370 i~~~~~~kvLVF~~s~~~ae~L~~~L~~~--g~~v~~ihg~~~~~eR~~il~~F-~~G~~~ILVAT~v~~~GIDip~v~~ 446 (779)
.....++++||||+++.+++.+++.|.+. ++.+..+||++++. +++++.| ++|+.+|||||+++++|||+|+|+
T Consensus 390 ~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~- 466 (675)
T PHA02653 390 YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNAT- 466 (675)
T ss_pred hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCceeEEeccChhhccccccCee-
Confidence 22234578999999999999999999987 78999999999985 5667777 789999999999999999999998
Q ss_pred cccccceeEEEEcC---CCC---------CHHHHHHHhccCCCCCCeEEEEEcChHH
Q psy17912 447 FRIGRASILVSQYK---ESQ---------QKRDRVLNEFRIGRASILVSHYNKSQQE 491 (779)
Q Consensus 447 ~~~~~~~~~VI~y~---~p~---------s~~~yiQR~GRaGR~g~~~~~~~~~~~e 491 (779)
+||+++ .|. +.++|+||+|||||. ..|.+|....++
T Consensus 467 --------~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~-~~G~c~rLyt~~ 514 (675)
T PHA02653 467 --------HVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV-SPGTYVYFYDLD 514 (675)
T ss_pred --------EEEECCCccCCCcccCcccccCHHHHHHhccCcCCC-CCCeEEEEECHH
Confidence 999998 665 888999999999999 566666554444
No 57
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.2e-36 Score=366.04 Aligned_cols=296 Identities=20% Similarity=0.252 Sum_probs=235.9
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 146 MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
.|+ +|+++|.+++|.++.|+|++++||||+|||+ |.++++..+.. +++++|||+||++|+.|+.+.+++++
T Consensus 77 ~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred cCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 466 8999999999999999999999999999995 55666555433 36789999999999999999999999
Q ss_pred ccCCceEEEEeCCCCC-----hhhHHHhh-cCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhc----------
Q psy17912 226 SATATRVACVFGGAPK-----GPQVKALQ-TGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLD---------- 289 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~-----~~~~~~l~-~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~---------- 289 (779)
...++.+..++|+... .+....+. ..++|+|+||++|.+.+. .+....+++|||||||++++
T Consensus 148 ~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~ 225 (1176)
T PRK09401 148 EKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLY 225 (1176)
T ss_pred hhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHH
Confidence 9888888877776542 22233334 358999999999999875 34566799999999999986
Q ss_pred -CCch-HHHHHHHhhcCC------------------------CCceEEeeccccHH-HHHHHHHhccCcEEEecCCCCCC
Q psy17912 290 -MGFE-PQIRKIIGQIRP------------------------DRQVLMWSATWPKE-VQKLAEDFLVDYVQLNIGSLNPT 342 (779)
Q Consensus 290 -~~f~-~~l~~il~~l~~------------------------~~qilllSAT~~~~-v~~l~~~~l~~~~~i~i~~~~~~ 342 (779)
.||. ..+..++..++. ..|++++|||+++. +.. .++.++..+.++... .
T Consensus 226 ~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~~-~ 301 (1176)
T PRK09401 226 LLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSPV-F 301 (1176)
T ss_pred hCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCcc-c
Confidence 5785 567777776654 68999999999864 332 233444445555443 2
Q ss_pred CccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhH---HHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHH
Q psy17912 343 ANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRK---ADDITRSVRNKGWAAVAIHGNKSQQERDRVLN 419 (779)
Q Consensus 343 ~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~---ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~ 419 (779)
...++.+.+.... ++...+..+++.+ +.++||||+++.. ++.+++.|+..|+++..+||+| .+.++
T Consensus 302 ~~rnI~~~yi~~~--~k~~~L~~ll~~l----~~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~ 370 (1176)
T PRK09401 302 YLRNIVDSYIVDE--DSVEKLVELVKRL----GDGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFE 370 (1176)
T ss_pred ccCCceEEEEEcc--cHHHHHHHHHHhc----CCCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHH
Confidence 3456666655444 5666777777654 3579999999877 9999999999999999999999 23469
Q ss_pred HHhcCCCcEEEE----ecccccccccCc-ccccccccceeEEEEcCCCC------CHHHHHHHhccCC
Q psy17912 420 EFRIGRASILVS----QYNKSQQERDRV-LNEFRIGRASILVSQYKESQ------QKRDRVLNEFRIG 476 (779)
Q Consensus 420 ~F~~G~~~ILVA----T~v~~~GIDip~-v~~~~~~~~~~~VI~y~~p~------s~~~yiQR~GRaG 476 (779)
+|++|+++|||| |++++||||+|+ |+ +||+|+.|. ....+.+|.||.-
T Consensus 371 ~F~~G~~~VLVatas~tdv~aRGIDiP~~Ir---------yVI~y~vP~~~~~~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 371 KFEEGEVDVLVGVASYYGVLVRGIDLPERIR---------YAIFYGVPKFKFSLEEELAPPFLLLRLL 429 (1176)
T ss_pred HHHCCCCCEEEEecCCCCceeecCCCCccee---------EEEEeCCCCEEEeccccccCHHHHHHHH
Confidence 999999999999 699999999998 77 999999998 6678899999985
No 58
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=2e-35 Score=351.35 Aligned_cols=314 Identities=14% Similarity=0.146 Sum_probs=237.9
Q ss_pred HHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHH-HhcccCCceEEEE
Q psy17912 157 QGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAN-DFGSATATRVACV 235 (779)
Q Consensus 157 ~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~-~~~~~~~l~v~~~ 235 (779)
+++..+.++++++++||||||||++|.++++.... ..++++|++|||++|.|+++.+. .+....+..++..
T Consensus 12 ~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~ 83 (812)
T PRK11664 12 ELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYR 83 (812)
T ss_pred HHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEE
Confidence 66667778999999999999999999999886432 12489999999999999999874 4556667777777
Q ss_pred eCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch-hhhcCCchH-HHHHHHhhcCCCCceEEee
Q psy17912 236 FGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD-RMLDMGFEP-QIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 236 ~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH-~l~~~~f~~-~l~~il~~l~~~~qilllS 313 (779)
.++.+.. ....+|+|+||++|++++.. ...++++++|||||+| +.++.++.. .+..++..++++.|+++||
T Consensus 84 vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmS 156 (812)
T PRK11664 84 MRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMS 156 (812)
T ss_pred ecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEe
Confidence 7665432 22358999999999999875 4579999999999999 466655432 3345566778899999999
Q ss_pred ccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhH-HHHHHHHHhccCCCCcEEEEecchhHHHHHH
Q psy17912 314 ATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDY-KLQGLLSQIGSERTSKTIIFVETKRKADDIT 392 (779)
Q Consensus 314 AT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~ 392 (779)
||++.+ . +..++.++..+.+.... ..+...+......++.. .+...+..+.....+.+||||+++.+++.++
T Consensus 157 ATl~~~--~-l~~~~~~~~~I~~~gr~----~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~ 229 (812)
T PRK11664 157 ATLDND--R-LQQLLPDAPVIVSEGRS----FPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQ 229 (812)
T ss_pred cCCCHH--H-HHHhcCCCCEEEecCcc----ccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHH
Confidence 999875 2 34666654444432221 12333333333222221 2222333333344689999999999999999
Q ss_pred HHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCC-----
Q psy17912 393 RSVRN---KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQ----- 464 (779)
Q Consensus 393 ~~L~~---~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s----- 464 (779)
+.|.+ .++.+..+||++++++|.++++.|++|+.+|||||+++++|||+|+|+ +||+++.+..
T Consensus 230 ~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~---------~VID~Gl~r~~~yd~ 300 (812)
T PRK11664 230 EQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIR---------LVVDSGLERVARFDP 300 (812)
T ss_pred HHHHHhccCCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCce---------EEEECCCcccccccc
Confidence 99987 578899999999999999999999999999999999999999999998 9999877643
Q ss_pred -------------HHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhcc
Q psy17912 465 -------------KRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIG 502 (779)
Q Consensus 465 -------------~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~ 502 (779)
..+|+||+|||||. ..|.+|....++.+..+.++..+
T Consensus 301 ~~g~~~L~~~~iSkasa~QR~GRaGR~-~~G~cyrL~t~~~~~~l~~~~~P 350 (812)
T PRK11664 301 KTGLTRLVTQRISQASMTQRAGRAGRL-EPGICLHLYSKEQAERAAAQSEP 350 (812)
T ss_pred cCCcceeEEEeechhhhhhhccccCCC-CCcEEEEecCHHHHhhCccCCCC
Confidence 35899999999999 58888887776666655555444
No 59
>PRK14701 reverse gyrase; Provisional
Probab=100.00 E-value=2.3e-35 Score=367.79 Aligned_cols=314 Identities=18% Similarity=0.185 Sum_probs=242.2
Q ss_pred HHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHH
Q psy17912 137 PYIMKKIYE-MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQ 215 (779)
Q Consensus 137 ~~l~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~ 215 (779)
.++.+.+++ +|| +|+++|+++++.+++|+|++++||||+|||++++++++.... +++++|||+||++|+.
T Consensus 66 ~~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~ 136 (1638)
T PRK14701 66 EEFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVK 136 (1638)
T ss_pred HHHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHH
Confidence 344555655 799 699999999999999999999999999999976666554422 2568999999999999
Q ss_pred HHHHHHHHhcccC--CceEEEEeCCCCChhhHH---Hhhc-CCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhc
Q psy17912 216 QIETVANDFGSAT--ATRVACVFGGAPKGPQVK---ALQT-GAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLD 289 (779)
Q Consensus 216 Q~~~~~~~~~~~~--~l~v~~~~gg~~~~~~~~---~l~~-~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~ 289 (779)
|+.+.++.++... ++++..++|+.+..++.. .+.. .++|+|+||++|.+.+... ....+++|||||||+|++
T Consensus 137 Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l--~~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 137 QTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM--KHLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred HHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH--hhCCCCEEEEECceeccc
Confidence 9999999988765 456777888887765532 3333 4899999999998876532 126799999999999987
Q ss_pred -----------CCchHHHHH----HHh----------------------hcCCCCc-eEEeeccccHHHHHHHHHhccCc
Q psy17912 290 -----------MGFEPQIRK----IIG----------------------QIRPDRQ-VLMWSATWPKEVQKLAEDFLVDY 331 (779)
Q Consensus 290 -----------~~f~~~l~~----il~----------------------~l~~~~q-illlSAT~~~~v~~l~~~~l~~~ 331 (779)
.||.+.+.. ++. .+++..| ++++|||+++. .....++.++
T Consensus 215 ~~knid~~L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~ 292 (1638)
T PRK14701 215 ASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYREL 292 (1638)
T ss_pred cccccchhhhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhcC
Confidence 478887764 332 2234555 56799999863 1222344666
Q ss_pred EEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhH---HHHHHHHHHhCCCeEEEEcCC
Q psy17912 332 VQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRK---ADDITRSVRNKGWAAVAIHGN 408 (779)
Q Consensus 332 ~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~---ae~L~~~L~~~g~~v~~ihg~ 408 (779)
..+.++... ....++.+.+.......+ ..+..+++.+ +..+||||++++. |+.+++.|...|+++..+||+
T Consensus 293 l~f~v~~~~-~~lr~i~~~yi~~~~~~k-~~L~~ll~~~----g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~ 366 (1638)
T PRK14701 293 LGFEVGSGR-SALRNIVDVYLNPEKIIK-EHVRELLKKL----GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK 366 (1638)
T ss_pred eEEEecCCC-CCCCCcEEEEEECCHHHH-HHHHHHHHhC----CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch
Confidence 667666554 344566666554443333 4566666543 4679999999875 589999999999999999995
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEe----cccccccccCc-ccccccccceeEEEEcCCCC---CHHHHHHHh--------
Q psy17912 409 KSQQERDRVLNEFRIGRASILVSQ----YNKSQQERDRV-LNEFRIGRASILVSQYKESQ---QKRDRVLNE-------- 472 (779)
Q Consensus 409 ~~~~eR~~il~~F~~G~~~ILVAT----~v~~~GIDip~-v~~~~~~~~~~~VI~y~~p~---s~~~yiQR~-------- 472 (779)
|..+++.|++|+++||||| ++++||||+|+ |+ +||+|+.|. +++.|.|..
T Consensus 367 -----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vr---------yvi~~~~Pk~~~~~e~~~~~~~~~~~~~~ 432 (1638)
T PRK14701 367 -----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLPERIR---------FAVFYGVPKFRFRVDLEDPTIYRILGLLS 432 (1638)
T ss_pred -----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccCCccC---------EEEEeCCCCCCcchhhcccchhhhhcchH
Confidence 8999999999999999999 58999999998 88 999999999 888776665
Q ss_pred -----ccCCCCCCeEE
Q psy17912 473 -----FRIGRASILVS 483 (779)
Q Consensus 473 -----GRaGR~g~~~~ 483 (779)
||+||.|...-
T Consensus 433 ~~~~~~~a~~~g~~~~ 448 (1638)
T PRK14701 433 EILKIEEELKEGIPIE 448 (1638)
T ss_pred HHHHhhhhcccCCcch
Confidence 99999996543
No 60
>KOG0351|consensus
Probab=100.00 E-value=1.3e-35 Score=350.55 Aligned_cols=321 Identities=17% Similarity=0.184 Sum_probs=250.8
Q ss_pred HHHHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHH
Q psy17912 139 IMKKIY-EMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQI 217 (779)
Q Consensus 139 l~~~l~-~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~ 217 (779)
++..+. .+|+..++|-|.++|..++.|+|+++.+|||+||++||++|++.. ++.+|||.|..+|++++
T Consensus 252 ~~~~l~~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQ 320 (941)
T KOG0351|consen 252 LELLLKEVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQ 320 (941)
T ss_pred HHHHHHHHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHH
Confidence 333443 589999999999999999999999999999999999999999852 34799999999999988
Q ss_pred HHHHHHhcccCCceEEEEeCCCCChhhH---HHhhc---CCeEEEeChHHHHHHH--HcCCcCCCC---eeEEEEccchh
Q psy17912 218 ETVANDFGSATATRVACVFGGAPKGPQV---KALQT---GAEIVIATPGRLIDYL--EQGTINLHR---TSYLVLDEADR 286 (779)
Q Consensus 218 ~~~~~~~~~~~~l~v~~~~gg~~~~~~~---~~l~~---~~~IiV~Tpe~Ll~~l--~~~~~~l~~---i~~lViDEaH~ 286 (779)
...+... ++....+.++....++. ..+.. .++|++.|||++...- ......+.. +.++|||||||
T Consensus 321 v~~L~~~----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHC 396 (941)
T KOG0351|consen 321 VTHLSKK----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHC 396 (941)
T ss_pred HHhhhhc----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHH
Confidence 8777443 78888888887775443 23333 4799999999986532 111223444 89999999999
Q ss_pred hhcCC--chHHHHHHHh--hcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHH
Q psy17912 287 MLDMG--FEPQIRKIIG--QIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYK 362 (779)
Q Consensus 287 l~~~~--f~~~l~~il~--~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~ 362 (779)
+++|+ |++.|.++.. .-.+..++|++|||++..+++.+...+.-........ .....++...+..-...+....
T Consensus 397 VSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~--sfnR~NL~yeV~~k~~~~~~~~ 474 (941)
T KOG0351|consen 397 VSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS--SFNRPNLKYEVSPKTDKDALLD 474 (941)
T ss_pred hhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc--cCCCCCceEEEEeccCccchHH
Confidence 99997 9999998843 3345689999999999999888777664322222211 1223444444433322222222
Q ss_pred HHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccC
Q psy17912 363 LQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDR 442 (779)
Q Consensus 363 L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip 442 (779)
+...++. ..+...+||||.++.+|+.++..|+..++.+..||+||+..+|..|.+.|.+++++|+|||-++++|||.|
T Consensus 475 ~~~~~~~--~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~ 552 (941)
T KOG0351|consen 475 ILEESKL--RHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKP 552 (941)
T ss_pred HHHHhhh--cCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCC
Confidence 2222222 34678999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEc
Q psy17912 443 VLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNK 487 (779)
Q Consensus 443 ~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~ 487 (779)
+|+ .||||..|.+++.|+|.+|||||.|....++.+
T Consensus 553 DVR---------~ViH~~lPks~E~YYQE~GRAGRDG~~s~C~l~ 588 (941)
T KOG0351|consen 553 DVR---------FVIHYSLPKSFEGYYQEAGRAGRDGLPSSCVLL 588 (941)
T ss_pred cee---------EEEECCCchhHHHHHHhccccCcCCCcceeEEe
Confidence 999 999999999999999999999999966544443
No 61
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.6e-34 Score=308.41 Aligned_cols=315 Identities=22% Similarity=0.247 Sum_probs=234.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc
Q psy17912 147 GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 147 g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 226 (779)
..-+++.||..+...++.+ |++++.|||.|||+++.+.+...+.+.+ + ++|+++||+.|+.|+...|+++..
T Consensus 12 ~~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~------~-kvlfLAPTKPLV~Qh~~~~~~v~~ 83 (542)
T COG1111 12 NTIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFG------G-KVLFLAPTKPLVLQHAEFCRKVTG 83 (542)
T ss_pred ccccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcC------C-eEEEecCCchHHHHHHHHHHHHhC
Confidence 3457889999999888876 9999999999999999999988887742 3 799999999999999999999976
Q ss_pred cCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCC
Q psy17912 227 ATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPD 306 (779)
Q Consensus 227 ~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~ 306 (779)
-....++.++|.....+....+.+ .+|+|+||+.+.+-+..+.+++.++.+|||||||+-....-...+.+......++
T Consensus 84 ip~~~i~~ltGev~p~~R~~~w~~-~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~ 162 (542)
T COG1111 84 IPEDEIAALTGEVRPEEREELWAK-KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKN 162 (542)
T ss_pred CChhheeeecCCCChHHHHHHHhh-CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHHhccC
Confidence 666677888887776655555444 6999999999999999999999999999999999877654333444434444567
Q ss_pred CceEEeeccccHHHHHH---HHHhccCcEEEec-----------------------------------------------
Q psy17912 307 RQVLMWSATWPKEVQKL---AEDFLVDYVQLNI----------------------------------------------- 336 (779)
Q Consensus 307 ~qilllSAT~~~~v~~l---~~~~l~~~~~i~i----------------------------------------------- 336 (779)
+.+++||||+..+.+.+ ...+....+.+..
T Consensus 163 ~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~ 242 (542)
T COG1111 163 PLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKEL 242 (542)
T ss_pred ceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88999999943222211 1111100000000
Q ss_pred ----CCCC-----------------CCCccceE-----------------------------------------------
Q psy17912 337 ----GSLN-----------------PTANHNIV----------------------------------------------- 348 (779)
Q Consensus 337 ----~~~~-----------------~~~~~~i~----------------------------------------------- 348 (779)
.... ........
T Consensus 243 g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~ 322 (542)
T COG1111 243 GVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAK 322 (542)
T ss_pred CceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHH
Confidence 0000 00000000
Q ss_pred ----------------EEEEeccccchhHHHHHHHHHhc-cCCCCcEEEEecchhHHHHHHHHHHhCCCeEE-EE-----
Q psy17912 349 ----------------QIVDVCQEHEKDYKLQGLLSQIG-SERTSKTIIFVETKRKADDITRSVRNKGWAAV-AI----- 405 (779)
Q Consensus 349 ----------------~~~~~~~~~~k~~~L~~ll~~i~-~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~-~i----- 405 (779)
......-.+.|...+..++++.. ...+.++|||++.+++|+.+.++|.+.+..+. .+
T Consensus 323 ~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~ 402 (542)
T COG1111 323 SLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQAS 402 (542)
T ss_pred HHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEeeccc
Confidence 00000002234455555565543 34568999999999999999999999887764 22
Q ss_pred ---cCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC
Q psy17912 406 ---HGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 406 ---hg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g 479 (779)
..||+|.++.++++.|+.|+.+|||||+++++|||+|.++ +||.|++-.|...++||.||+||..
T Consensus 403 r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vD---------lVifYEpvpSeIR~IQR~GRTGR~r 470 (542)
T COG1111 403 REGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVD---------LVIFYEPVPSEIRSIQRKGRTGRKR 470 (542)
T ss_pred cccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCccc---------EEEEecCCcHHHHHHHhhCccccCC
Confidence 2479999999999999999999999999999999999999 9999999999999999999999974
No 62
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=5.6e-35 Score=343.28 Aligned_cols=355 Identities=17% Similarity=0.178 Sum_probs=259.9
Q ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCH
Q psy17912 133 CNFPPYIMKKIYEMGFQAPTAIQAQGWPIAL-SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTR 211 (779)
Q Consensus 133 ~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr 211 (779)
+.+++.+.+-+...++.++.|.|++++.... +++|+|+++|||||||+++++.++..+.+. +.++|+|||++
T Consensus 14 ~~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlk 86 (766)
T COG1204 14 VKLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLK 86 (766)
T ss_pred ccccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChH
Confidence 3577888888888888888888888886654 569999999999999999999999998873 45799999999
Q ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC
Q psy17912 212 ELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG 291 (779)
Q Consensus 212 ~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~ 291 (779)
+||.++++.++ ....+|++|...+|+.+.... ...+++|+|+|||++-..+.+....+..+++|||||+|.+.+..
T Consensus 87 ALa~Ek~~~~~-~~~~~GirV~~~TgD~~~~~~---~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~ 162 (766)
T COG1204 87 ALAEEKYEEFS-RLEELGIRVGISTGDYDLDDE---RLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRT 162 (766)
T ss_pred HHHHHHHHHhh-hHHhcCCEEEEecCCcccchh---hhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcc
Confidence 99999999999 335679999999999876542 12358999999999999988776678899999999999988887
Q ss_pred chHHHHHHHhhcC---CCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccc------hhHH
Q psy17912 292 FEPQIRKIIGQIR---PDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHE------KDYK 362 (779)
Q Consensus 292 f~~~l~~il~~l~---~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~------k~~~ 362 (779)
..+.++.|+..++ +..|++++|||+|+- .+++.-...+++.....+..........+.+....... ....
T Consensus 163 RG~~lE~iv~r~~~~~~~~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~ 241 (766)
T COG1204 163 RGPVLESIVARMRRLNELIRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNL 241 (766)
T ss_pred cCceehhHHHHHHhhCcceEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHH
Confidence 7777777766553 457999999999974 44444333333322222222111112222222222111 2233
Q ss_pred HHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC-------------------------------------CCeEEEE
Q psy17912 363 LQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK-------------------------------------GWAAVAI 405 (779)
Q Consensus 363 L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~-------------------------------------g~~v~~i 405 (779)
+..++.... ..++++||||+|++.+...|..|... -..++++
T Consensus 242 ~~~~v~~~~-~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafH 320 (766)
T COG1204 242 ALELVLESL-AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFH 320 (766)
T ss_pred HHHHHHHHH-hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCcccc
Confidence 333333322 25789999999999999999998820 0136889
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEE----EcC-----CCCCHHHHHHHhccCC
Q psy17912 406 HGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVS----QYK-----ESQQKRDRVLNEFRIG 476 (779)
Q Consensus 406 hg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI----~y~-----~p~s~~~yiQR~GRaG 476 (779)
|++++.++|..+.+.|+.|+++|||||+++++|+|.|.-. ++| .|+ .+-+..+++||+||||
T Consensus 321 hAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~~---------VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAG 391 (766)
T COG1204 321 HAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPART---------VIIKDTRRYDPKGGIVDIPVLDVLQMAGRAG 391 (766)
T ss_pred ccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcceE---------EEEeeeEEEcCCCCeEECchhhHhhccCcCC
Confidence 9999999999999999999999999999999999999754 322 456 5667889999999999
Q ss_pred CCC----CeEEEEEcChHHHHHHHHhhhccccceeec
Q psy17912 477 RAS----ILVSHYNKSQQERDRVLNEFRIGRASILVS 509 (779)
Q Consensus 477 R~g----~~~~~~~~~~~e~~~~l~e~~~~~~~il~~ 509 (779)
|.| ..++.+..+..+.......+.......+.+
T Consensus 392 RPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s 428 (766)
T COG1204 392 RPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIES 428 (766)
T ss_pred CCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHH
Confidence 998 233444434445455555555544444333
No 63
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=1.5e-34 Score=311.03 Aligned_cols=367 Identities=20% Similarity=0.188 Sum_probs=278.0
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE
Q psy17912 129 HFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPI-ALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL 207 (779)
Q Consensus 129 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil 207 (779)
..+++.+|+.+.+.|+..|++.+.|+|.-++.. ++.|.|.+++++|+||||++..++-+..+.. .+.+.|++
T Consensus 195 ~vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfL 267 (830)
T COG1202 195 PVDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFL 267 (830)
T ss_pred cccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEE
Confidence 356688999999999999999999999999976 6799999999999999999999988887776 36689999
Q ss_pred ccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH----HHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEcc
Q psy17912 208 APTRELAQQIETVANDFGSATATRVACVFGGAPKGPQV----KALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDE 283 (779)
Q Consensus 208 ~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~----~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDE 283 (779)
+|..+||+|.++.|++-...+++.+..-.|-.-..... ......+||||+|++-+-.++..+ ..+.+++.|||||
T Consensus 268 vPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDE 346 (830)
T COG1202 268 VPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDE 346 (830)
T ss_pred ehhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeee
Confidence 99999999999999988888899887777654322221 111234799999999999888776 5799999999999
Q ss_pred chhhhcCCchHHHHHH---HhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEecc-ccch
Q psy17912 284 ADRMLDMGFEPQIRKI---IGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQ-EHEK 359 (779)
Q Consensus 284 aH~l~~~~f~~~l~~i---l~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~-~~~k 359 (779)
+|.+-+...++.+.-+ ++.+.++.|++.+|||+.++ +++++.+..+.+...-.+. .+...+.++. +.+|
T Consensus 347 iHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~a~lV~y~~RPV------plErHlvf~~~e~eK 419 (830)
T COG1202 347 IHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLGAKLVLYDERPV------PLERHLVFARNESEK 419 (830)
T ss_pred eeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhCCeeEeecCCCC------ChhHeeeeecCchHH
Confidence 9998886655555544 55666899999999999765 5677777666665543332 2333344444 5677
Q ss_pred hHHHHHHHHHhcc-----CCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy17912 360 DYKLQGLLSQIGS-----ERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYN 434 (779)
Q Consensus 360 ~~~L~~ll~~i~~-----~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v 434 (779)
...+..+++.-.. .-.+++|||++|++.|..|+..|...|+++.+||+|++..+|..+...|.++++.++|+|-+
T Consensus 420 ~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAA 499 (830)
T COG1202 420 WDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAA 499 (830)
T ss_pred HHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhh
Confidence 7777777754221 13578999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC--CeEEEEEcChHHH----------HHHHHhhhcc
Q psy17912 435 KSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS--ILVSHYNKSQQER----------DRVLNEFRIG 502 (779)
Q Consensus 435 ~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g--~~~~~~~~~~~e~----------~~~l~e~~~~ 502 (779)
++.|+|+|.-.+..-.- .+-+ .=.++.+|.||.|||||.+ ..|.+|.+.++.+ +.+.-++-.+
T Consensus 500 L~AGVDFPASQVIFEsL--aMG~---~WLs~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s 574 (830)
T COG1202 500 LAAGVDFPASQVIFESL--AMGI---EWLSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLES 574 (830)
T ss_pred hhcCCCCchHHHHHHHH--Hccc---ccCCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcC
Confidence 99999999755110000 0001 1147899999999999987 3344554432221 2233334444
Q ss_pred ccceeeccccccH
Q psy17912 503 RASILVSHYNKSQ 515 (779)
Q Consensus 503 ~~~il~~~~~~~~ 515 (779)
....+..+|+...
T Consensus 575 ~~e~V~vey~ee~ 587 (830)
T COG1202 575 EPEPVIVEYDEED 587 (830)
T ss_pred CCCcceeccCcHH
Confidence 4555555555444
No 64
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=100.00 E-value=1.8e-34 Score=319.02 Aligned_cols=288 Identities=17% Similarity=0.151 Sum_probs=203.0
Q ss_pred CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCC-----
Q psy17912 167 DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPK----- 241 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~----- 241 (779)
++++.+|||||||++|++|++..+... .+.+++|++|+++|+.|+++.+..+... .+..+++....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 589999999999999999999876542 2458999999999999999999887432 23333332211
Q ss_pred ------hhhH-HHh------hcCCeEEEeChHHHHHHHHcCC----cCCC--CeeEEEEccchhhhcCCchHHHHHHHhh
Q psy17912 242 ------GPQV-KAL------QTGAEIVIATPGRLIDYLEQGT----INLH--RTSYLVLDEADRMLDMGFEPQIRKIIGQ 302 (779)
Q Consensus 242 ------~~~~-~~l------~~~~~IiV~Tpe~Ll~~l~~~~----~~l~--~i~~lViDEaH~l~~~~f~~~l~~il~~ 302 (779)
.... ... .-..+|+|+||++++..+..+. ..+. ..++|||||||.+.++++.. +..++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~ 150 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEV 150 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHH
Confidence 0000 000 0135799999999998876521 1111 23799999999998765443 5555554
Q ss_pred cC-CCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEe--ccccchhHHHHHHHHHhccCCCCcEE
Q psy17912 303 IR-PDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDV--CQEHEKDYKLQGLLSQIGSERTSKTI 379 (779)
Q Consensus 303 l~-~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~--~~~~~k~~~L~~ll~~i~~~~~~kvL 379 (779)
+. .+.|+++||||+|+.+.+++..+...+......... ......+.+.. .....+...+..++..+. .++++|
T Consensus 151 l~~~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--~~~~~l 226 (358)
T TIGR01587 151 LKDNDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLKE--ERRFERHRFIKIESDKVGEISSLERLLEFIK--KGGKIA 226 (358)
T ss_pred HHHcCCCEEEEecCchHHHHHHHhcCCCcccccCCCCcc--ccccccccceeeccccccCHHHHHHHHHHhh--CCCeEE
Confidence 43 478999999999987777766554332111111110 00000111111 112244556666665432 468999
Q ss_pred EEecchhHHHHHHHHHHhCCC--eEEEEcCCCCHHHHHHH----HHHHhcCCCcEEEEecccccccccCcccccccccce
Q psy17912 380 IFVETKRKADDITRSVRNKGW--AAVAIHGNKSQQERDRV----LNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRAS 453 (779)
Q Consensus 380 VF~~s~~~ae~L~~~L~~~g~--~v~~ihg~~~~~eR~~i----l~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~ 453 (779)
|||++++.|+.+++.|++.+. .+..+||++++.+|.++ ++.|++|+.+|||||+++++|+|++ ++
T Consensus 227 Vf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~-------- 297 (358)
T TIGR01587 227 IIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-AD-------- 297 (358)
T ss_pred EEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CC--------
Confidence 999999999999999988765 59999999999999764 8999999999999999999999996 44
Q ss_pred eEEEEcCCCCCHHHHHHHhccCCCCCC
Q psy17912 454 ILVSQYKESQQKRDRVLNEFRIGRASI 480 (779)
Q Consensus 454 ~~VI~y~~p~s~~~yiQR~GRaGR~g~ 480 (779)
+||++..| +.+|+||+||+||.|.
T Consensus 298 -~vi~~~~~--~~~~iqr~GR~gR~g~ 321 (358)
T TIGR01587 298 -VMITELAP--IDSLIQRLGRLHRYGR 321 (358)
T ss_pred -EEEEcCCC--HHHHHHHhccccCCCC
Confidence 77787666 7899999999999873
No 65
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=7.2e-34 Score=325.95 Aligned_cols=300 Identities=13% Similarity=0.093 Sum_probs=220.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhccc
Q psy17912 148 FQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSA 227 (779)
Q Consensus 148 ~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 227 (779)
...|+++|+++++.++.+++.++++|||+|||+++...+. .+... ...++|||+||++|+.|+.+.++++...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~-~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSR-YYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH-HHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 4589999999999999999999999999999987654322 22221 1337999999999999999999998754
Q ss_pred CCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCC
Q psy17912 228 TATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDR 307 (779)
Q Consensus 228 ~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~ 307 (779)
....+..+.+|.... .+.+|+|+||+++.+... ..++++++||+||||++... .+..++..+++..
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~~~ 250 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK----SLTSIITKLDNCK 250 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch----hHHHHHHhhhccc
Confidence 444555666665432 346999999999876442 24678999999999998754 5667777777778
Q ss_pred ceEEeeccccHHHHHHH--HHhccCcEEEecCCC-----CCCCccceEE--------------------EE-Eeccccch
Q psy17912 308 QVLMWSATWPKEVQKLA--EDFLVDYVQLNIGSL-----NPTANHNIVQ--------------------IV-DVCQEHEK 359 (779)
Q Consensus 308 qilllSAT~~~~v~~l~--~~~l~~~~~i~i~~~-----~~~~~~~i~~--------------------~~-~~~~~~~k 359 (779)
++++||||++....... ..++. ++...+... .......+.. .+ .......+
T Consensus 251 ~~lGLTATp~~~~~~~~~~~~~fG-~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~R 329 (501)
T PHA02558 251 FKFGLTGSLRDGKANILQYVGLFG-DIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKR 329 (501)
T ss_pred eEEEEeccCCCccccHHHHHHhhC-CceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHH
Confidence 99999999864321111 11111 111111000 0000000000 00 00111223
Q ss_pred hHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe-cccccc
Q psy17912 360 DYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQ-YNKSQQ 438 (779)
Q Consensus 360 ~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT-~v~~~G 438 (779)
...+..++..+. ..+.++||||.+.++++.|++.|.+.+.++..+||++++++|..+++.|++|+..||||| +++++|
T Consensus 330 n~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG 408 (501)
T PHA02558 330 NKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTG 408 (501)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccc
Confidence 334444554443 346789999999999999999999999999999999999999999999999999999999 899999
Q ss_pred cccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC
Q psy17912 439 ERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 439 IDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g 479 (779)
+|+|.++ .||.+.++.+...|+||+||++|.+
T Consensus 409 ~Dip~ld---------~vIl~~p~~s~~~~~QriGR~~R~~ 440 (501)
T PHA02558 409 ISIKNLH---------HVIFAHPSKSKIIVLQSIGRVLRKH 440 (501)
T ss_pred ccccccc---------EEEEecCCcchhhhhhhhhccccCC
Confidence 9999999 9999999999999999999999986
No 66
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=5.1e-33 Score=317.82 Aligned_cols=330 Identities=19% Similarity=0.174 Sum_probs=245.9
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
..|+|+|..+++.++.|+ |+.+.||+|||++|.+|++..... ++.++|++||++||.|.++++..+...+
T Consensus 102 ~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~--------G~~v~VvTptreLA~qdae~~~~l~~~l 171 (656)
T PRK12898 102 QRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA--------GLPVHVITVNDYLAERDAELMRPLYEAL 171 (656)
T ss_pred CCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc--------CCeEEEEcCcHHHHHHHHHHHHHHHhhc
Confidence 478999999999999998 999999999999999999987654 6789999999999999999999999999
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcCC-------------------------cCCCCeeEEEEc
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQGT-------------------------INLHRTSYLVLD 282 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~~-------------------------~~l~~i~~lViD 282 (779)
++++++++|+.+. +.+....+++|+|+|...| .++|..+. ...+.+.+.|||
T Consensus 172 Glsv~~i~gg~~~--~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvD 249 (656)
T PRK12898 172 GLTVGCVVEDQSP--DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVD 249 (656)
T ss_pred CCEEEEEeCCCCH--HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEee
Confidence 9999999999753 3445556799999999888 45554321 123567899999
Q ss_pred cchhhh-cCC------------c--hHH-----------------------------------HHHHHhh----------
Q psy17912 283 EADRML-DMG------------F--EPQ-----------------------------------IRKIIGQ---------- 302 (779)
Q Consensus 283 EaH~l~-~~~------------f--~~~-----------------------------------l~~il~~---------- 302 (779)
|+|.++ |.. - ... ++.++..
T Consensus 250 EvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 250 EADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPAWRGAVR 329 (656)
T ss_pred cccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhhcccchH
Confidence 999654 211 0 000 0000000
Q ss_pred --------c------CCC-------------------------------------------------------------C
Q psy17912 303 --------I------RPD-------------------------------------------------------------R 307 (779)
Q Consensus 303 --------l------~~~-------------------------------------------------------------~ 307 (779)
+ ..+ .
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 0 000 3
Q ss_pred ceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhH
Q psy17912 308 QVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRK 387 (779)
Q Consensus 308 qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ 387 (779)
++.+||||++....++...|..+++.+...... .....+.+.++...+|...|..++..+.. .+.++||||+|++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~---~r~~~~~~v~~t~~~K~~aL~~~i~~~~~-~~~pvLIft~t~~~ 485 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPS---QRRHLPDEVFLTAAAKWAAVAARVRELHA-QGRPVLVGTRSVAA 485 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCc---cceecCCEEEeCHHHHHHHHHHHHHHHHh-cCCCEEEEeCcHHH
Confidence 577899999988888888888887766554433 11223334455666778888888776532 35789999999999
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccc-ccccceeEEEEcCCCCCHH
Q psy17912 388 ADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEF-RIGRASILVSQYKESQQKR 466 (779)
Q Consensus 388 ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~-~~~~~~~~VI~y~~p~s~~ 466 (779)
++.+++.|.+.|+++..+||+++ +|+..+..|+.+...|+|||++++||+|++..... ..+. .+||+|+.|.+..
T Consensus 486 se~L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GG--LhVI~~d~P~s~r 561 (656)
T PRK12898 486 SERLSALLREAGLPHQVLNAKQD--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGG--LHVILTERHDSAR 561 (656)
T ss_pred HHHHHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCC--CEEEEcCCCCCHH
Confidence 99999999999999999999865 45555555665666899999999999999832100 1111 2899999999999
Q ss_pred HHHHHhccCCCCCCeEEEEEcChHHHHHHHHhh
Q psy17912 467 DRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 499 (779)
Q Consensus 467 ~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~ 499 (779)
.|.||+||+||.|..|.+++.-..+ +.++..|
T Consensus 562 ~y~hr~GRTGRqG~~G~s~~~is~e-D~l~~~~ 593 (656)
T PRK12898 562 IDRQLAGRCGRQGDPGSYEAILSLE-DDLLQSF 593 (656)
T ss_pred HHHHhcccccCCCCCeEEEEEechh-HHHHHhh
Confidence 9999999999999888666654433 3344433
No 67
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=100.00 E-value=7.6e-33 Score=339.41 Aligned_cols=292 Identities=18% Similarity=0.257 Sum_probs=222.5
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHH
Q psy17912 139 IMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIE 218 (779)
Q Consensus 139 l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~ 218 (779)
+.+.+.+....+|+++|+.+++.++.|+|++++||||+|||+ |.+|++..+.. .++++|||+||++||.|++
T Consensus 67 f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Qi~ 138 (1171)
T TIGR01054 67 FEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQVA 138 (1171)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHHHH
Confidence 444454445558999999999999999999999999999996 66777666543 2678999999999999999
Q ss_pred HHHHHhcccCCceEE---EEeCCCCChhhH---HHhhc-CCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhc--
Q psy17912 219 TVANDFGSATATRVA---CVFGGAPKGPQV---KALQT-GAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLD-- 289 (779)
Q Consensus 219 ~~~~~~~~~~~l~v~---~~~gg~~~~~~~---~~l~~-~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~-- 289 (779)
+.++.++...++.+. .++|+.+..++. ..+.+ +++|+|+||++|.+.+..- .. .+++|||||||+|++
T Consensus 139 ~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l--~~-~~~~iVvDEaD~~L~~~ 215 (1171)
T TIGR01054 139 EKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDEL--GP-KFDFIFVDDVDALLKAS 215 (1171)
T ss_pred HHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHh--cC-CCCEEEEeChHhhhhcc
Confidence 999999887776543 467877665443 23333 5899999999999877541 12 899999999999998
Q ss_pred ---------CCchHH-HHHHH----------------------hhcCCCCc--eEEeecc-ccHHHHHHHHHhccCcEEE
Q psy17912 290 ---------MGFEPQ-IRKII----------------------GQIRPDRQ--VLMWSAT-WPKEVQKLAEDFLVDYVQL 334 (779)
Q Consensus 290 ---------~~f~~~-l~~il----------------------~~l~~~~q--illlSAT-~~~~v~~l~~~~l~~~~~i 334 (779)
.||... +..++ ..+++..| ++++||| .|..+.. .++.+...+
T Consensus 216 k~vd~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~ 292 (1171)
T TIGR01054 216 KNVDKLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGF 292 (1171)
T ss_pred ccHHHHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccce
Confidence 678764 44443 23344555 5678999 5655432 334555555
Q ss_pred ecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecch---hHHHHHHHHHHhCCCeEEEEcCCCCH
Q psy17912 335 NIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETK---RKADDITRSVRNKGWAAVAIHGNKSQ 411 (779)
Q Consensus 335 ~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~---~~ae~L~~~L~~~g~~v~~ihg~~~~ 411 (779)
.++... ....++.+.+..... +...+..+++.+ +.++||||+++ +.|+.|++.|.+.|+++..+||++++
T Consensus 293 ~v~~~~-~~~r~I~~~~~~~~~--~~~~L~~ll~~l----~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~ 365 (1171)
T TIGR01054 293 EVGGGS-DTLRNVVDVYVEDED--LKETLLEIVKKL----GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK 365 (1171)
T ss_pred EecCcc-ccccceEEEEEeccc--HHHHHHHHHHHc----CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH
Confidence 555543 334556665543332 244566666653 46799999999 99999999999999999999999973
Q ss_pred HHHHHHHHHHhcCCCcEEEEe----cccccccccCc-ccccccccceeEEEEcCCCCC
Q psy17912 412 QERDRVLNEFRIGRASILVSQ----YNKSQQERDRV-LNEFRIGRASILVSQYKESQQ 464 (779)
Q Consensus 412 ~eR~~il~~F~~G~~~ILVAT----~v~~~GIDip~-v~~~~~~~~~~~VI~y~~p~s 464 (779)
.+++.|++|+++||||| ++++||||+|+ |+ +||+|+.|..
T Consensus 366 ----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip~~V~---------~vI~~~~P~~ 410 (1171)
T TIGR01054 366 ----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLPERVR---------YAVFLGVPKF 410 (1171)
T ss_pred ----HHHHHHHcCCCCEEEEeccccCcccccCCCCcccc---------EEEEECCCCE
Confidence 78999999999999994 99999999998 78 9999999965
No 68
>KOG0353|consensus
Probab=100.00 E-value=1.4e-33 Score=289.55 Aligned_cols=314 Identities=15% Similarity=0.218 Sum_probs=245.6
Q ss_pred CcCCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc
Q psy17912 130 FEECNFPPYIMKKIYE-MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA 208 (779)
Q Consensus 130 f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~ 208 (779)
-++++++.+..+.|+. +..++++|.|..+|+..+.+.+++++.|||.||++||++|++.. ...+||++
T Consensus 73 kd~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~ 141 (695)
T KOG0353|consen 73 KDDFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVIC 141 (695)
T ss_pred cCCCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeec
Confidence 3456777888777775 78899999999999999999999999999999999999999862 34689999
Q ss_pred cCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHH---h-h--cCCeEEEeChHHHHHH---HHc--CCcCCCCee
Q psy17912 209 PTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKA---L-Q--TGAEIVIATPGRLIDY---LEQ--GTINLHRTS 277 (779)
Q Consensus 209 Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~---l-~--~~~~IiV~Tpe~Ll~~---l~~--~~~~l~~i~ 277 (779)
|..+|++++.-.++.+ |+....+....++++..+. + . ....+++.||+.+..- +.+ ..+....+.
T Consensus 142 plislmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~ 217 (695)
T KOG0353|consen 142 PLISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFK 217 (695)
T ss_pred hhHHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeE
Confidence 9999999998888887 5555555555554433211 1 1 2368999999998642 211 234566789
Q ss_pred EEEEccchhhhcCC--chHHHHHH--HhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEe
Q psy17912 278 YLVLDEADRMLDMG--FEPQIRKI--IGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDV 353 (779)
Q Consensus 278 ~lViDEaH~l~~~~--f~~~l~~i--l~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~ 353 (779)
+|.+||+|+..+|| |++.+..+ ++...+..+++++|||.+..+...+++.+.-......... ....++...+..
T Consensus 218 ~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~--fnr~nl~yev~q 295 (695)
T KOG0353|consen 218 LIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG--FNRPNLKYEVRQ 295 (695)
T ss_pred EEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc--cCCCCceeEeee
Confidence 99999999999997 88877654 6666789999999999999888888777642221111111 112333333322
Q ss_pred ccccchhHHHHHHHHHhccC-CCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe
Q psy17912 354 CQEHEKDYKLQGLLSQIGSE-RTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQ 432 (779)
Q Consensus 354 ~~~~~k~~~L~~ll~~i~~~-~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT 432 (779)
.+....+.+.++.+.+... .+...||||-++++|+.++..|+..|+.+..||+.|.+.+|.-+-+.|.+|++.|+|||
T Consensus 296 -kp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivat 374 (695)
T KOG0353|consen 296 -KPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVAT 374 (695)
T ss_pred -CCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCccccccccccccccceEEEEEE
Confidence 2233445556666655332 46778999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCcccccccccceeEEEEcCCCCCHHHHHH
Q psy17912 433 YNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVL 470 (779)
Q Consensus 433 ~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQ 470 (779)
-++++|||.|+|+ +|||..+|.+++.|.|
T Consensus 375 vafgmgidkpdvr---------fvihhsl~ksienyyq 403 (695)
T KOG0353|consen 375 VAFGMGIDKPDVR---------FVIHHSLPKSIENYYQ 403 (695)
T ss_pred eeecccCCCCCee---------EEEecccchhHHHHHH
Confidence 9999999999999 9999999999999999
No 69
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=8.8e-32 Score=325.87 Aligned_cols=316 Identities=22% Similarity=0.264 Sum_probs=234.3
Q ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc
Q psy17912 147 GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 147 g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 226 (779)
+.-+|++||.+++..++.+ |+++++|||+|||+++++++...+.. .+.++|||+||++|+.|+.+.++++..
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 3457899999999988887 99999999999999999988877742 245899999999999999999998865
Q ss_pred cCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCC
Q psy17912 227 ATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPD 306 (779)
Q Consensus 227 ~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~ 306 (779)
..+..+..++|+....+ ...+..+++|+|+||+.+...+..+.+.+.++++|||||||++........+...+....+.
T Consensus 84 ~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHEDAKN 162 (773)
T ss_pred CCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHhcCCC
Confidence 44557777888776543 33444567999999999988887778888999999999999987654333344444444456
Q ss_pred CceEEeeccccH---HHHHHHHHhccCcEEEecC----------------------------------------------
Q psy17912 307 RQVLMWSATWPK---EVQKLAEDFLVDYVQLNIG---------------------------------------------- 337 (779)
Q Consensus 307 ~qilllSAT~~~---~v~~l~~~~l~~~~~i~i~---------------------------------------------- 337 (779)
..+++||||+.. .+......+....+.+...
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 779999999632 2222222211111100000
Q ss_pred -CCCCCC---c-c-------ceEEE-------------------------------------------------------
Q psy17912 338 -SLNPTA---N-H-------NIVQI------------------------------------------------------- 350 (779)
Q Consensus 338 -~~~~~~---~-~-------~i~~~------------------------------------------------------- 350 (779)
...... . . .+...
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 000000 0 0 00000
Q ss_pred -----------------EEeccccchhHHHHHHHHHhcc-CCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCC----
Q psy17912 351 -----------------VDVCQEHEKDYKLQGLLSQIGS-ERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGN---- 408 (779)
Q Consensus 351 -----------------~~~~~~~~k~~~L~~ll~~i~~-~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~---- 408 (779)
........|...|.+++..+.. ..+.++||||+++++|+.|++.|...++.+..+||.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~ 402 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKD 402 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 0000112344555566655432 467899999999999999999999999999999886
Q ss_pred ----CCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCC
Q psy17912 409 ----KSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASI 480 (779)
Q Consensus 409 ----~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~ 480 (779)
+++.+|.++++.|++|+.+|||||+++++|+|+|.++ +||+|++|.+...|+||+||+||.+.
T Consensus 403 ~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGldi~~~~---------~VI~yd~~~s~~r~iQR~GR~gR~~~ 469 (773)
T PRK13766 403 GDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGLDIPSVD---------LVIFYEPVPSEIRSIQRKGRTGRQEE 469 (773)
T ss_pred ccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCC---------EEEEeCCCCCHHHHHHHhcccCcCCC
Confidence 9999999999999999999999999999999999998 99999999999999999999999764
No 70
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=100.00 E-value=4.2e-32 Score=298.30 Aligned_cols=293 Identities=15% Similarity=0.108 Sum_probs=206.2
Q ss_pred HHHHHHHHHhcCCC--EEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhccc----
Q psy17912 154 IQAQGWPIALSGCD--LVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSA---- 227 (779)
Q Consensus 154 ~Q~~~i~~il~g~d--vii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~---- 227 (779)
+|.++++.+.++.+ +++++|||||||.+|++|++.. ..++++++|+++|++|+.+.++++...
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998874 7889999999999999998841 235899999999999999998887643
Q ss_pred CCceEEEEeCCCCChhhH--------------------HHhhcCCeEEEeChHHHHHHHHcCC--------cCCCCeeEE
Q psy17912 228 TATRVACVFGGAPKGPQV--------------------KALQTGAEIVIATPGRLIDYLEQGT--------INLHRTSYL 279 (779)
Q Consensus 228 ~~l~v~~~~gg~~~~~~~--------------------~~l~~~~~IiV~Tpe~Ll~~l~~~~--------~~l~~i~~l 279 (779)
.+..+..+.|.+...... ......+.|+++||+.|..++.... ..+.++++|
T Consensus 70 ~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~i 149 (357)
T TIGR03158 70 RDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTV 149 (357)
T ss_pred CCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEE
Confidence 255566666652221000 0012357899999999977654311 125789999
Q ss_pred EEccchhhhcCC-----chHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHh--ccCcEEEecCCCC-----C----C-
Q psy17912 280 VLDEADRMLDMG-----FEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDF--LVDYVQLNIGSLN-----P----T- 342 (779)
Q Consensus 280 ViDEaH~l~~~~-----f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~--l~~~~~i~i~~~~-----~----~- 342 (779)
||||+|.+..+. +......++.......+++++|||+++.+...+... +..++....+..- + .
T Consensus 150 V~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~ 229 (357)
T TIGR03158 150 IFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADN 229 (357)
T ss_pred EEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccc
Confidence 999999876543 222334444444446799999999999888877765 4444433222200 0 0
Q ss_pred -------CccceEEEEEeccccchhHHHHHHHHHhc----cCCCCcEEEEecchhHHHHHHHHHHhCC--CeEEEEcCCC
Q psy17912 343 -------ANHNIVQIVDVCQEHEKDYKLQGLLSQIG----SERTSKTIIFVETKRKADDITRSVRNKG--WAAVAIHGNK 409 (779)
Q Consensus 343 -------~~~~i~~~~~~~~~~~k~~~L~~ll~~i~----~~~~~kvLVF~~s~~~ae~L~~~L~~~g--~~v~~ihg~~ 409 (779)
....+...+.. ....+...+..+++.+. ...++++||||+|++.++.+++.|++.+ +.+..+||.+
T Consensus 230 ~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~ 308 (357)
T TIGR03158 230 KTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFA 308 (357)
T ss_pred cccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCC
Confidence 00133333322 33344444544444332 2356799999999999999999999864 5788999999
Q ss_pred CHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCC
Q psy17912 410 SQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIG 476 (779)
Q Consensus 410 ~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaG 476 (779)
++.+|.++ ++.+|||||+++++|||++.+ .|| ++ |.+..+|+||+||+|
T Consensus 309 ~~~~R~~~------~~~~iLVaTdv~~rGiDi~~~----------~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 309 PKKDRERA------MQFDILLGTSTVDVGVDFKRD----------WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred CHHHHHHh------ccCCEEEEecHHhcccCCCCc----------eEE-EC-CCCHHHHhhhcccCC
Confidence 99998765 378999999999999999864 344 44 899999999999997
No 71
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=100.00 E-value=3.4e-32 Score=324.11 Aligned_cols=328 Identities=17% Similarity=0.206 Sum_probs=257.0
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHH
Q psy17912 135 FPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELA 214 (779)
Q Consensus 135 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La 214 (779)
....+..++.+.|+..|+++|.+|+..+.+|+|+||+.+||||||.+|++|++.++...+. .++|+|.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS------ARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC------ccEEEEechhhhH
Confidence 4455678888889999999999999999999999999999999999999999999998653 2789999999999
Q ss_pred HHHHHHHHHhcccCC--ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC----cCCCCeeEEEEccchhhh
Q psy17912 215 QQIETVANDFGSATA--TRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT----INLHRTSYLVLDEADRML 288 (779)
Q Consensus 215 ~Q~~~~~~~~~~~~~--l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~----~~l~~i~~lViDEaH~l~ 288 (779)
++|.+.++++....+ +.+...+|++...+......+.++|+++||.+|...+.... ..++.+++|||||+|..-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYr 208 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYR 208 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceecc
Confidence 999999999988777 77788888888776667778889999999999987554433 246779999999999643
Q ss_pred cCCchHHHHHHHhh-------cCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEecc------
Q psy17912 289 DMGFEPQIRKIIGQ-------IRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQ------ 355 (779)
Q Consensus 289 ~~~f~~~l~~il~~-------l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~------ 355 (779)
.. |+..+..+++. .+.+.|+|+.|||+... .+++.++........+.... ........+...+
T Consensus 209 Gv-~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~g--~~~~~~~~~~~~p~~~~~~ 284 (851)
T COG1205 209 GV-QGSEVALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDEDG--SPRGLRYFVRREPPIRELA 284 (851)
T ss_pred cc-chhHHHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCCC--CCCCceEEEEeCCcchhhh
Confidence 32 44444444332 34578999999999765 45666776665555333222 1122222222222
Q ss_pred ---ccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHH----HHHHhCC----CeEEEEcCCCCHHHHHHHHHHHhcC
Q psy17912 356 ---EHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDIT----RSVRNKG----WAAVAIHGNKSQQERDRVLNEFRIG 424 (779)
Q Consensus 356 ---~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~----~~L~~~g----~~v~~ihg~~~~~eR~~il~~F~~G 424 (779)
...+...+..++.... ..+-++|+|+.++..++.+. ..+...+ ..+..+++++...+|.+++..|++|
T Consensus 285 ~~~r~s~~~~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g 363 (851)
T COG1205 285 ESIRRSALAELATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEG 363 (851)
T ss_pred hhcccchHHHHHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcC
Confidence 1134444444444432 35789999999999999997 4444445 5689999999999999999999999
Q ss_pred CCcEEEEecccccccccCcccccccccceeEEEEcCCCC-CHHHHHHHhccCCCCCCeE
Q psy17912 425 RASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQ-QKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 425 ~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~-s~~~yiQR~GRaGR~g~~~ 482 (779)
++.++++|++++-|+|+-.+. .||.++.|. +..+++||+||+||.+...
T Consensus 364 ~~~~~~st~AlelgidiG~ld---------avi~~g~P~~s~~~~~Q~~GRaGR~~~~~ 413 (851)
T COG1205 364 ELLGVIATNALELGIDIGSLD---------AVIAYGYPGVSVLSFRQRAGRAGRRGQES 413 (851)
T ss_pred CccEEecchhhhhceeehhhh---------hHhhcCCCCchHHHHHHhhhhccCCCCCc
Confidence 999999999999999999988 999999999 9999999999999998433
No 72
>KOG0349|consensus
Probab=100.00 E-value=1.1e-33 Score=294.53 Aligned_cols=275 Identities=28% Similarity=0.414 Sum_probs=215.4
Q ss_pred CEEEEEccCHHHHHHHHHHHHHhc---ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeE
Q psy17912 202 PIVLVLAPTRELAQQIETVANDFG---SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSY 278 (779)
Q Consensus 202 ~~vLil~Ptr~La~Q~~~~~~~~~---~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~ 278 (779)
|.++|+-|.++|++|.+..+++|- ....++...+.||.-.+.+...+..+.+|+|+||+++++.+..+.+.+..+.+
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 789999999999999998666654 44456777888999999999999999999999999999999999999999999
Q ss_pred EEEccchhhhcCCchHHHHHHHhhcCC------CCceEEeeccccH-HHHHHHHHhccCcEEEecCCCCCCCccceEEEE
Q psy17912 279 LVLDEADRMLDMGFEPQIRKIIGQIRP------DRQVLMWSATWPK-EVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIV 351 (779)
Q Consensus 279 lViDEaH~l~~~~f~~~l~~il~~l~~------~~qilllSAT~~~-~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~ 351 (779)
+|+|||+.++..++...+..+..+++. ..|.+++|||+.. ++..+.++.+.-|.-+.....+ .+++.+...+
T Consensus 367 lvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkgeD-~vpetvHhvv 445 (725)
T KOG0349|consen 367 LVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGED-LVPETVHHVV 445 (725)
T ss_pred EEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEeccccc-ccchhhccce
Confidence 999999999999988888888777752 4799999999742 3445555555555555544433 2222222221
Q ss_pred Eeccc------------------------------cchhHHHHHHH------HHhccCCCCcEEEEecchhHHHHHHHHH
Q psy17912 352 DVCQE------------------------------HEKDYKLQGLL------SQIGSERTSKTIIFVETKRKADDITRSV 395 (779)
Q Consensus 352 ~~~~~------------------------------~~k~~~L~~ll------~~i~~~~~~kvLVF~~s~~~ae~L~~~L 395 (779)
..+.. .+....-..++ ..+......++||||.|+.+|+.|.+++
T Consensus 446 ~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~ 525 (725)
T KOG0349|consen 446 KLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMM 525 (725)
T ss_pred eecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHHHHH
Confidence 11110 00001111111 1222335678999999999999999999
Q ss_pred HhCC---CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHh
Q psy17912 396 RNKG---WAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNE 472 (779)
Q Consensus 396 ~~~g---~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~ 472 (779)
.+.| +.++++||+..+.||.+-++.|+.+..++||||+++++|||+..+- ++|+..+|.....|+||+
T Consensus 526 ~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p---------~~invtlpd~k~nyvhri 596 (725)
T KOG0349|consen 526 NQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLP---------FMINVTLPDDKTNYVHRI 596 (725)
T ss_pred HHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCc---------eEEEEecCcccchhhhhh
Confidence 9864 7899999999999999999999999999999999999999999988 999999999999999999
Q ss_pred ccCCCCCCeEEEEE
Q psy17912 473 FRIGRASILVSHYN 486 (779)
Q Consensus 473 GRaGR~g~~~~~~~ 486 (779)
||+||+-..+.++.
T Consensus 597 grvgraermglais 610 (725)
T KOG0349|consen 597 GRVGRAERMGLAIS 610 (725)
T ss_pred hccchhhhcceeEE
Confidence 99999876664444
No 73
>KOG0354|consensus
Probab=100.00 E-value=4.2e-32 Score=307.39 Aligned_cols=335 Identities=22% Similarity=0.195 Sum_probs=233.9
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHH
Q psy17912 135 FPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELA 214 (779)
Q Consensus 135 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La 214 (779)
+++...+...--..-.+++||.+.+..++ ++|+|+++|||+|||+++...++.++.+.+ ..++|+++|++.|+
T Consensus 47 ~~~s~~~~~~~p~~~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p------~~KiVF~aP~~pLv 119 (746)
T KOG0354|consen 47 LDESAAQRWIYPTNLELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP------KGKVVFLAPTRPLV 119 (746)
T ss_pred CChhhhccccccCcccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC------cceEEEeeCCchHH
Confidence 44444444433345678999999999999 999999999999999999999999998865 35899999999999
Q ss_pred HHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcC-CCCeeEEEEccchhhhcCC-c
Q psy17912 215 QQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTIN-LHRTSYLVLDEADRMLDMG-F 292 (779)
Q Consensus 215 ~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~-l~~i~~lViDEaH~l~~~~-f 292 (779)
.|+...+..++.. ..+....|+.........+-...+|+|+||+.+.+.|..+... |+++.++||||||+-.... +
T Consensus 120 ~QQ~a~~~~~~~~--~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y 197 (746)
T KOG0354|consen 120 NQQIACFSIYLIP--YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPY 197 (746)
T ss_pred HHHHHHHhhccCc--ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccH
Confidence 9999888888765 5566666664444444455556899999999999998776543 6999999999999877665 3
Q ss_pred hHHHHHHHhhcCCCCceEEeeccccHHHHHHHHH----------------------------------------------
Q psy17912 293 EPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAED---------------------------------------------- 326 (779)
Q Consensus 293 ~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~---------------------------------------------- 326 (779)
...+...+..-....|+|+||||+..........
T Consensus 198 ~~Vmr~~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~ 277 (746)
T KOG0354|consen 198 NNIMREYLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGM 277 (746)
T ss_pred HHHHHHHHHhhhccccEEEEecCCCccHHHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHH
Confidence 4344455544444559999999965333221111
Q ss_pred ----hcc-----CcEEEecCC---------CCCCCccceEE----------------------EEE------ec------
Q psy17912 327 ----FLV-----DYVQLNIGS---------LNPTANHNIVQ----------------------IVD------VC------ 354 (779)
Q Consensus 327 ----~l~-----~~~~i~i~~---------~~~~~~~~i~~----------------------~~~------~~------ 354 (779)
++. ....+.-.. .......+... .+. +.
T Consensus 278 ~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e 357 (746)
T KOG0354|consen 278 IIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLEDFYEE 357 (746)
T ss_pred HHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccc
Confidence 000 000000000 00000000000 000 00
Q ss_pred ----------------------------------cccchhHHHHHHHHHh-ccCCCCcEEEEecchhHHHHHHHHHHh--
Q psy17912 355 ----------------------------------QEHEKDYKLQGLLSQI-GSERTSKTIIFVETKRKADDITRSVRN-- 397 (779)
Q Consensus 355 ----------------------------------~~~~k~~~L~~ll~~i-~~~~~~kvLVF~~s~~~ae~L~~~L~~-- 397 (779)
....|...+.+.+.+. ...+..++||||.++..|+.|..+|.+
T Consensus 358 ~~~~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~ 437 (746)
T KOG0354|consen 358 VALKKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLH 437 (746)
T ss_pred cchhHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhh
Confidence 0112333333333322 223568899999999999999999983
Q ss_pred -CCCeEEEEc--------CCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHH
Q psy17912 398 -KGWAAVAIH--------GNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDR 468 (779)
Q Consensus 398 -~g~~v~~ih--------g~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~y 468 (779)
.+++...+- .+|++.++.++++.|++|+++|||||+++++|||++.|+ +||-||...++..+
T Consensus 438 ~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ec~---------lVIcYd~~snpIrm 508 (746)
T KOG0354|consen 438 ELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIGECN---------LVICYDYSSNPIRM 508 (746)
T ss_pred hcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCccccc---------EEEEecCCccHHHH
Confidence 233333333 489999999999999999999999999999999999999 99999999999999
Q ss_pred HHHhccCCCCCCeEEEEEcC
Q psy17912 469 VLNEFRIGRASILVSHYNKS 488 (779)
Q Consensus 469 iQR~GRaGR~g~~~~~~~~~ 488 (779)
+||.|| ||+....++...+
T Consensus 509 IQrrGR-gRa~ns~~vll~t 527 (746)
T KOG0354|consen 509 VQRRGR-GRARNSKCVLLTT 527 (746)
T ss_pred HHHhcc-ccccCCeEEEEEc
Confidence 999999 9987555544443
No 74
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=100.00 E-value=7.1e-32 Score=314.62 Aligned_cols=320 Identities=17% Similarity=0.178 Sum_probs=232.4
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 146 MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
.|. .|+++|..+++.+..|+ |+.+.||+|||++|.+|++..... |+.++|++||++||.|.++.+..+.
T Consensus 75 ~g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~--------G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 75 LGM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE--------GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred hCC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 454 89999999999988886 999999999999999999876654 6689999999999999999999999
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcCC------cCCCCeeEEEEccchhhhcCC-------
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQGT------INLHRTSYLVLDEADRMLDMG------- 291 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~~------~~l~~i~~lViDEaH~l~~~~------- 291 (779)
..++++++++.|+.+...+.+.. .+++|+|+||+.| .++|..+. ..++.+.++||||||.|+-..
T Consensus 144 ~~lGl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tplii 222 (790)
T PRK09200 144 EFLGLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPLII 222 (790)
T ss_pred hhcCCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCceee
Confidence 99999999999998844343433 4589999999999 56654432 356789999999999765311
Q ss_pred ---------chHHHHHHHhhcCC--------C------------------------------------------------
Q psy17912 292 ---------FEPQIRKIIGQIRP--------D------------------------------------------------ 306 (779)
Q Consensus 292 ---------f~~~l~~il~~l~~--------~------------------------------------------------ 306 (779)
+......++..+.+ .
T Consensus 223 sg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d 302 (790)
T PRK09200 223 SGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRD 302 (790)
T ss_pred eCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcC
Confidence 11111122221111 0
Q ss_pred -------------------------------------------------------------CceEEeeccccHHHHHHHH
Q psy17912 307 -------------------------------------------------------------RQVLMWSATWPKEVQKLAE 325 (779)
Q Consensus 307 -------------------------------------------------------------~qilllSAT~~~~v~~l~~ 325 (779)
.++.+||.|...+-.++..
T Consensus 303 ~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~ 382 (790)
T PRK09200 303 VDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFE 382 (790)
T ss_pred CcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHH
Confidence 1234444444333333333
Q ss_pred HhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEE
Q psy17912 326 DFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAI 405 (779)
Q Consensus 326 ~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~i 405 (779)
.|..+.+.+ +...+........ ..+....+|...+...+.... ....++||||+|++.++.+++.|.+.|+++..+
T Consensus 383 ~Y~l~v~~I--Pt~kp~~r~d~~~-~i~~~~~~K~~al~~~i~~~~-~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L 458 (790)
T PRK09200 383 VYNMEVVQI--PTNRPIIRIDYPD-KVFVTLDEKYKAVIEEVKERH-ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLL 458 (790)
T ss_pred HhCCcEEEC--CCCCCcccccCCC-eEEcCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEe
Confidence 333322222 1111111111111 223344566777777766542 357899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCCcEEEEeccccccccc---CcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeE
Q psy17912 406 HGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERD---RVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 406 hg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDi---p~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~ 482 (779)
||++.+.++..+...++.| .|+|||++++||+|+ |.|. .++. .+||+|+.|.+...|+||+||+||.|..|
T Consensus 459 ~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~--~~GG--L~VI~~d~p~s~r~y~qr~GRtGR~G~~G 532 (790)
T PRK09200 459 NAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVH--ELGG--LAVIGTERMESRRVDLQLRGRSGRQGDPG 532 (790)
T ss_pred cCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccc--cccC--cEEEeccCCCCHHHHHHhhccccCCCCCe
Confidence 9999999998888888766 799999999999998 4442 1111 28999999999999999999999999888
Q ss_pred EEEEc
Q psy17912 483 SHYNK 487 (779)
Q Consensus 483 ~~~~~ 487 (779)
.+++.
T Consensus 533 ~s~~~ 537 (790)
T PRK09200 533 SSQFF 537 (790)
T ss_pred eEEEE
Confidence 55554
No 75
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=8.1e-32 Score=325.07 Aligned_cols=309 Identities=18% Similarity=0.197 Sum_probs=216.2
Q ss_pred HHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccC----HHHHHHHHHHHHH-hcccCCc
Q psy17912 156 AQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPT----RELAQQIETVAND-FGSATAT 230 (779)
Q Consensus 156 ~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Pt----r~La~Q~~~~~~~-~~~~~~l 230 (779)
.+++..+.+++.++++|+||||||+ ++|.+...... +....+++..|. ++||.++.+++.. ++...|+
T Consensus 80 ~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~-----g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY 152 (1294)
T PRK11131 80 QDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGR-----GVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGY 152 (1294)
T ss_pred HHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCC-----CCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceece
Confidence 3666777788899999999999997 57865443221 112245556674 5777777777654 3333333
Q ss_pred eEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch-hhhcCCchHHHHHHHhhcCCCCce
Q psy17912 231 RVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD-RMLDMGFEPQIRKIIGQIRPDRQV 309 (779)
Q Consensus 231 ~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH-~l~~~~f~~~l~~il~~l~~~~qi 309 (779)
.+ ..+ .....+++|+|+|||+|++.+..+. .++++++||||||| ++++.+|...+.+-+...+++.|+
T Consensus 153 ~v--------rf~--~~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpdlKv 221 (1294)
T PRK11131 153 KV--------RFN--DQVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKV 221 (1294)
T ss_pred ee--------cCc--cccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccchHHHHHHHhhhcCCCceE
Confidence 22 111 1113457999999999999987654 49999999999999 789988876433222223468999
Q ss_pred EEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccc---hhHHHHH---HHHHhccCCCCcEEEEec
Q psy17912 310 LMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHE---KDYKLQG---LLSQIGSERTSKTIIFVE 383 (779)
Q Consensus 310 lllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~---k~~~L~~---ll~~i~~~~~~kvLVF~~ 383 (779)
|+||||++.+ .+.+.|...++ +.+.... ..+...+....... +...+.. .+..+.....+.+||||+
T Consensus 222 ILmSATid~e--~fs~~F~~apv-I~V~Gr~----~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLp 294 (1294)
T PRK11131 222 IITSATIDPE--RFSRHFNNAPI-IEVSGRT----YPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMS 294 (1294)
T ss_pred EEeeCCCCHH--HHHHHcCCCCE-EEEcCcc----ccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcC
Confidence 9999999753 56666655554 3333222 12222222221111 2233333 333444456788999999
Q ss_pred chhHHHHHHHHHHhCCCe---EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcC
Q psy17912 384 TKRKADDITRSVRNKGWA---AVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYK 460 (779)
Q Consensus 384 s~~~ae~L~~~L~~~g~~---v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~ 460 (779)
++.+++.+++.|.+.+++ +..+||++++++|..+++. .|..+|||||+++++|||+|+|+ +||+++
T Consensus 295 g~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~---------yVID~G 363 (1294)
T PRK11131 295 GEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIK---------YVIDPG 363 (1294)
T ss_pred CHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcce---------EEEECC
Confidence 999999999999987654 7889999999999999986 57899999999999999999998 999986
Q ss_pred ---------------CC---CCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhc
Q psy17912 461 ---------------ES---QQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRI 501 (779)
Q Consensus 461 ---------------~p---~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~ 501 (779)
+| .|..+|.||+|||||. ..|.+|....++.+..+.++..
T Consensus 364 l~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~-~~G~c~rLyte~d~~~~~~~~~ 421 (1294)
T PRK11131 364 TARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV-SEGICIRLYSEDDFLSRPEFTD 421 (1294)
T ss_pred CccccccccccCcccCCeeecCHhhHhhhccccCCC-CCcEEEEeCCHHHHHhhhcccC
Confidence 23 4568999999999999 5677777766666655555433
No 76
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=100.00 E-value=1.3e-31 Score=309.42 Aligned_cols=319 Identities=15% Similarity=0.095 Sum_probs=222.5
Q ss_pred CCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCc
Q psy17912 151 PTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATAT 230 (779)
Q Consensus 151 p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l 230 (779)
++|+|.+++..+..++..|+.++||+|||++|.+|++..... ++.++|++|+++||.|+.+++..+...+|+
T Consensus 69 lrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LGL 140 (762)
T TIGR03714 69 MFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLGL 140 (762)
T ss_pred CCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcCC
Confidence 455555555555555557999999999999999998876654 446999999999999999999999999999
Q ss_pred eEEEEeCCCC---ChhhHHHhhcCCeEEEeChHHH-HHHHHcC------CcCCCCeeEEEEccchhhhcCC---------
Q psy17912 231 RVACVFGGAP---KGPQVKALQTGAEIVIATPGRL-IDYLEQG------TINLHRTSYLVLDEADRMLDMG--------- 291 (779)
Q Consensus 231 ~v~~~~gg~~---~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~------~~~l~~i~~lViDEaH~l~~~~--------- 291 (779)
.+.+++++.. ...+.+....+++|+|+||+.| .+++..+ ...++.+.++|+||||.|+...
T Consensus 141 sv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg 220 (762)
T TIGR03714 141 TVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISG 220 (762)
T ss_pred cEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeC
Confidence 9988877632 2223344445799999999999 5666432 2457889999999999885321
Q ss_pred -------chHHHHHHHhhcCCC----------------------------------------------------------
Q psy17912 292 -------FEPQIRKIIGQIRPD---------------------------------------------------------- 306 (779)
Q Consensus 292 -------f~~~l~~il~~l~~~---------------------------------------------------------- 306 (779)
+......++..+.++
T Consensus 221 ~~~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~d 300 (762)
T TIGR03714 221 APRVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKD 300 (762)
T ss_pred CCccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCc
Confidence 001111122222110
Q ss_pred -----------------------------------------------------------CceEEeeccccHHHHHHHHHh
Q psy17912 307 -----------------------------------------------------------RQVLMWSATWPKEVQKLAEDF 327 (779)
Q Consensus 307 -----------------------------------------------------------~qilllSAT~~~~v~~l~~~~ 327 (779)
.++.+||.|...+..++.+.|
T Consensus 301 YiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY 380 (762)
T TIGR03714 301 YVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETY 380 (762)
T ss_pred eEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHh
Confidence 234455555444444444333
Q ss_pred ccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcC
Q psy17912 328 LVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHG 407 (779)
Q Consensus 328 l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg 407 (779)
..+.+. ++...+....... ...+.....|...+...+.... ..+.++||||+|++.++.++..|.+.|+++..+||
T Consensus 381 ~l~v~~--IPt~kp~~r~d~~-d~i~~~~~~K~~ai~~~i~~~~-~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a 456 (762)
T TIGR03714 381 SLSVVK--IPTNKPIIRIDYP-DKIYATLPEKLMATLEDVKEYH-ETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNA 456 (762)
T ss_pred CCCEEE--cCCCCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHh-hCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecC
Confidence 322222 1111111111111 1233445567777777666542 35789999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEecccccccccC---cccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEE
Q psy17912 408 NKSQQERDRVLNEFRIGRASILVSQYNKSQQERDR---VLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSH 484 (779)
Q Consensus 408 ~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip---~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~ 484 (779)
++.+.++..+.+.++.| .|+|||++++||+|++ .|. ....+.+|++|++|....+ .||+||+||.|..|.+
T Consensus 457 ~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~---~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s 530 (762)
T TIGR03714 457 QNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVA---ELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSS 530 (762)
T ss_pred CChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCcccc---ccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeE
Confidence 99999998888877776 7999999999999998 111 1112338999999999877 9999999999988855
Q ss_pred EEc
Q psy17912 485 YNK 487 (779)
Q Consensus 485 ~~~ 487 (779)
++.
T Consensus 531 ~~~ 533 (762)
T TIGR03714 531 QFF 533 (762)
T ss_pred EEE
Confidence 554
No 77
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=100.00 E-value=4.2e-31 Score=303.35 Aligned_cols=318 Identities=16% Similarity=0.160 Sum_probs=228.6
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
..|+++|..+.+.+..|+ |+.++||+|||++|.+|++..... +..|+|++||..||.|.++++..+...+
T Consensus 55 ~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~L 124 (745)
T TIGR00963 55 MRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRFL 124 (745)
T ss_pred CCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 478889999888888776 999999999999999999755543 3369999999999999999999999999
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcC------CcCCCCeeEEEEccchhhhcCC-ch-------
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQG------TINLHRTSYLVLDEADRMLDMG-FE------- 293 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~------~~~l~~i~~lViDEaH~l~~~~-f~------- 293 (779)
++++.+++|+.+..+.... ..++|+|+||++| .+++..+ ...++.+.++||||+|+++-.. ..
T Consensus 125 GLsv~~i~g~~~~~~r~~~--y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~ 202 (745)
T TIGR00963 125 GLSVGLILSGMSPEERREA--YACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGP 202 (745)
T ss_pred CCeEEEEeCCCCHHHHHHh--cCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhHHhhcCC
Confidence 9999999999876443333 3489999999999 8888765 2467899999999999776411 00
Q ss_pred --------HHHHHHHhhcCC--------C---------------------------------------------------
Q psy17912 294 --------PQIRKIIGQIRP--------D--------------------------------------------------- 306 (779)
Q Consensus 294 --------~~l~~il~~l~~--------~--------------------------------------------------- 306 (779)
.....+.+.+.. .
T Consensus 203 ~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dY 282 (745)
T TIGR00963 203 AEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDY 282 (745)
T ss_pred CCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 001111111110 0
Q ss_pred ----------------------------------------------------------CceEEeeccccHHHHHHHHHhc
Q psy17912 307 ----------------------------------------------------------RQVLMWSATWPKEVQKLAEDFL 328 (779)
Q Consensus 307 ----------------------------------------------------------~qilllSAT~~~~v~~l~~~~l 328 (779)
.++.+||.|+..+..++...|.
T Consensus 283 iV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 362 (745)
T TIGR00963 283 IVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYN 362 (745)
T ss_pred EEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhC
Confidence 1334444444443333433333
Q ss_pred cCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCC
Q psy17912 329 VDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGN 408 (779)
Q Consensus 329 ~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~ 408 (779)
.+.+.+.. ..+....... ...+....+|...+...+... ...+.|+||||+|.+.++.+++.|.+.|+++..+|++
T Consensus 363 l~vv~IPt--nkp~~R~d~~-d~i~~t~~~k~~ai~~~i~~~-~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~ 438 (745)
T TIGR00963 363 LEVVVVPT--NRPVIRKDLS-DLVYKTEEEKWKAVVDEIKER-HAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK 438 (745)
T ss_pred CCEEEeCC--CCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC
Confidence 33222211 1111111111 111233344555555544443 3468999999999999999999999999999999998
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEE
Q psy17912 409 KSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYN 486 (779)
Q Consensus 409 ~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~ 486 (779)
+.+|+..+..|+.+...|+|||++|+||+|++.-.+-..+ ..+||+++.|.+...|.|++||+||.|..|.+.+
T Consensus 439 --q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~G--Gl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~ 512 (745)
T TIGR00963 439 --NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELG--GLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRF 512 (745)
T ss_pred --hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcC--CcEEEecCCCCcHHHHHHHhccccCCCCCcceEE
Confidence 8899999999999999999999999999999871101111 2389999999999999999999999998884433
No 78
>KOG0952|consensus
Probab=99.98 E-value=4.5e-31 Score=301.06 Aligned_cols=333 Identities=16% Similarity=0.156 Sum_probs=238.8
Q ss_pred cCCCCCCHHHHHHHHHHh-cCCCEEEEccCCCChhHHHHHHHHHHHhccC--CCCCCCCCEEEEEccCHHHHHHHHHHHH
Q psy17912 146 MGFQAPTAIQAQGWPIAL-SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQR--PLRSGEGPIVLVLAPTRELAQQIETVAN 222 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il-~g~dvii~apTGsGKTl~~~lp~l~~l~~~~--~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 222 (779)
++|..++.+|++++|.+. ++.|+|||||||+|||..|+|.++..+.++. .....++-++++|+|+++||..+++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 688999999999999987 5579999999999999999999999888621 1122346789999999999999999998
Q ss_pred HhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC---cCCCCeeEEEEccchhhhcCCchHHHHHH
Q psy17912 223 DFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT---INLHRTSYLVLDEADRMLDMGFEPQIRKI 299 (779)
Q Consensus 223 ~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~---~~l~~i~~lViDEaH~l~~~~f~~~l~~i 299 (779)
+-...+|+.|..++|++...... -..++|+|+|||++--.-.+.. ..++.+.+|||||+|.+-+. .++.++.|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te---i~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~-RGpvlEti 261 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE---IADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDD-RGPVLETI 261 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH---HHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCc-ccchHHHH
Confidence 88888899999999998765443 2348999999998743332211 23677899999999976554 67777777
Q ss_pred Hhhc-------CCCCceEEeeccccHHHHHHHHHhcc-CcEEEecCCCCCCCccceEEEEEecccc---chhH-----HH
Q psy17912 300 IGQI-------RPDRQVLMWSATWPKEVQKLAEDFLV-DYVQLNIGSLNPTANHNIVQIVDVCQEH---EKDY-----KL 363 (779)
Q Consensus 300 l~~l-------~~~~qilllSAT~~~~v~~l~~~~l~-~~~~i~i~~~~~~~~~~i~~~~~~~~~~---~k~~-----~L 363 (779)
+... ....+++++|||+|+- ++++ .|++ ++..-.........+-.+.+.+...... .+.. ..
T Consensus 262 VaRtlr~vessqs~IRivgLSATlPN~-eDvA-~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~ 339 (1230)
T KOG0952|consen 262 VARTLRLVESSQSMIRIVGLSATLPNY-EDVA-RFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCY 339 (1230)
T ss_pred HHHHHHHHHhhhhheEEEEeeccCCCH-HHHH-HHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHH
Confidence 6543 3567999999999974 3444 4443 3222222111212222333433333222 1111 22
Q ss_pred HHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC----C-------------------CeEEEEcCCCCHHHHHHHHHH
Q psy17912 364 QGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK----G-------------------WAAVAIHGNKSQQERDRVLNE 420 (779)
Q Consensus 364 ~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~----g-------------------~~v~~ihg~~~~~eR~~il~~ 420 (779)
.++++.+. .+.+++|||.++..+...|+.|.+. | .....+|+||..++|..+.+.
T Consensus 340 ~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~ 417 (1230)
T KOG0952|consen 340 DKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKE 417 (1230)
T ss_pred HHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHH
Confidence 23333332 5899999999999999999998742 1 236789999999999999999
Q ss_pred HhcCCCcEEEEecccccccccCcccccccccceeEEEE-----cCCC------CCHHHHHHHhccCCCCC--CeEEEEEc
Q psy17912 421 FRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQ-----YKES------QQKRDRVLNEFRIGRAS--ILVSHYNK 487 (779)
Q Consensus 421 F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~-----y~~p------~s~~~yiQR~GRaGR~g--~~~~~~~~ 487 (779)
|+.|.++||+||..+++|+++|.- .||. ||.. ...-+.+|..|||||.. ..|..+.+
T Consensus 418 F~~G~i~vL~cTaTLAwGVNLPA~----------aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIi 487 (1230)
T KOG0952|consen 418 FKEGHIKVLCCTATLAWGVNLPAY----------AVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIII 487 (1230)
T ss_pred HhcCCceEEEecceeeeccCCcce----------EEEecCCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEE
Confidence 999999999999999999999973 3443 3332 24667899999999975 44555554
Q ss_pred ChHHHHHHH
Q psy17912 488 SQQERDRVL 496 (779)
Q Consensus 488 ~~~e~~~~l 496 (779)
...++...+
T Consensus 488 Tt~dkl~~Y 496 (1230)
T KOG0952|consen 488 TTRDKLDHY 496 (1230)
T ss_pred ecccHHHHH
Confidence 444554433
No 79
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.97 E-value=6.1e-30 Score=310.04 Aligned_cols=314 Identities=17% Similarity=0.159 Sum_probs=221.4
Q ss_pred HHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEe
Q psy17912 157 QGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVF 236 (779)
Q Consensus 157 ~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~ 236 (779)
+++..+.+++.+|++|+||||||+ ++|.+..-... +...++++..|.|..|..++..+.+. .+..++..+
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~e---lg~~lG~~V 143 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAEE---LGTPLGEKV 143 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHHH---hCCCcceEE
Confidence 566677788899999999999997 46765543221 12236778889988887766544332 244444444
Q ss_pred CCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch-hhhcCCchHHHHHHHhhcCCCCceEEeecc
Q psy17912 237 GGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD-RMLDMGFEPQIRKIIGQIRPDRQVLMWSAT 315 (779)
Q Consensus 237 gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH-~l~~~~f~~~l~~il~~l~~~~qilllSAT 315 (779)
|+....+.. ......|.|+|+|+|++.+..+. .++.+++||||||| ++++.+|...+.+-+...+++.|+|+||||
T Consensus 144 GY~vR~~~~--~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdLKlIlmSAT 220 (1283)
T TIGR01967 144 GYKVRFHDQ--VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSAT 220 (1283)
T ss_pred eeEEcCCcc--cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCCeEEEEeCC
Confidence 543222111 13457899999999999986654 58999999999999 799988876633333344578999999999
Q ss_pred ccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccc------cchhHHHHHHHHHhccCCCCcEEEEecchhHHH
Q psy17912 316 WPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQE------HEKDYKLQGLLSQIGSERTSKTIIFVETKRKAD 389 (779)
Q Consensus 316 ~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~------~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae 389 (779)
++. ..+.+.|...++ +.+..... .+...+..... .++...+...+..+.....+.+|||+++..+++
T Consensus 221 ld~--~~fa~~F~~apv-I~V~Gr~~----PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~ 293 (1283)
T TIGR01967 221 IDP--ERFSRHFNNAPI-IEVSGRTY----PVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIR 293 (1283)
T ss_pred cCH--HHHHHHhcCCCE-EEECCCcc----cceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHH
Confidence 975 456666655554 33322211 12222221111 123344455555554455689999999999999
Q ss_pred HHHHHHHhCC---CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCC----
Q psy17912 390 DITRSVRNKG---WAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKES---- 462 (779)
Q Consensus 390 ~L~~~L~~~g---~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p---- 462 (779)
.+++.|.+.+ +.+..+||++++++|.++++.+ +..+|||||+++++|||+|+|+ +||+++.+
T Consensus 294 ~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~---------yVIDsGl~r~~~ 362 (1283)
T TIGR01967 294 DAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIH---------YVIDTGTARISR 362 (1283)
T ss_pred HHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCee---------EEEeCCCccccc
Confidence 9999999764 4688999999999999997654 3479999999999999999998 99998843
Q ss_pred --------------CCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhcc
Q psy17912 463 --------------QQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIG 502 (779)
Q Consensus 463 --------------~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~ 502 (779)
-|..+|.||+|||||.+ .|.+|....++.+..+.++..+
T Consensus 363 yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~-~G~cyRLyte~~~~~~~~~~~P 415 (1283)
T TIGR01967 363 YSYRTKVQRLPIEPISQASANQRKGRCGRVA-PGICIRLYSEEDFNSRPEFTDP 415 (1283)
T ss_pred cccccCccccCCccCCHHHHHHHhhhhCCCC-CceEEEecCHHHHHhhhhccCc
Confidence 36689999999999998 7778877776666555555443
No 80
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.96 E-value=2e-28 Score=283.19 Aligned_cols=295 Identities=17% Similarity=0.148 Sum_probs=202.7
Q ss_pred CCCCHHHHHHHHHHhc-C--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 149 QAPTAIQAQGWPIALS-G--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~-g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
..++|||.+++..+.. + +..++++|||+|||++.+..+. .+. .++|||||+..|+.||.+.+.++.
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l~----------k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TVK----------KSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-HhC----------CCEEEEeCcHHHHHHHHHHHHHhc
Confidence 4689999999998873 3 4789999999999988775443 221 258999999999999999999986
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHc--------CCcCCCCeeEEEEccchhhhcCCchHHHH
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQ--------GTINLHRTSYLVLDEADRMLDMGFEPQIR 297 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~--------~~~~l~~i~~lViDEaH~l~~~~f~~~l~ 297 (779)
......+..++|+.... .....+|+|+|+..+.....+ ..+.-..+++||+||||++.. ..+.
T Consensus 323 ~l~~~~I~~~tg~~k~~-----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr 393 (732)
T TIGR00603 323 TIDDSQICRFTSDAKER-----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFR 393 (732)
T ss_pred CCCCceEEEEecCcccc-----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHH
Confidence 54445566666643221 112368999999877533211 112235689999999999864 4555
Q ss_pred HHHhhcCCCCceEEeeccccHHHH--HHHHHhccCcEEEecCCCCCCCc---cceEEEEE--------------------
Q psy17912 298 KIIGQIRPDRQVLMWSATWPKEVQ--KLAEDFLVDYVQLNIGSLNPTAN---HNIVQIVD-------------------- 352 (779)
Q Consensus 298 ~il~~l~~~~qilllSAT~~~~v~--~l~~~~l~~~~~i~i~~~~~~~~---~~i~~~~~-------------------- 352 (779)
.++..+. ....++||||+..+-. ..+. ++..|......-.+.... ..+.....
T Consensus 394 ~il~~l~-a~~RLGLTATP~ReD~~~~~L~-~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k 471 (732)
T TIGR00603 394 RVLTIVQ-AHCKLGLTATLVREDDKITDLN-FLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKR 471 (732)
T ss_pred HHHHhcC-cCcEEEEeecCcccCCchhhhh-hhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhh
Confidence 6666553 4568999999753211 1111 111122111110000000 00000000
Q ss_pred ---eccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcE
Q psy17912 353 ---VCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIG-RASI 428 (779)
Q Consensus 353 ---~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G-~~~I 428 (779)
......|...+..+++.. ...+.++||||.+...++.+++.|. +..+||++++.+|..+++.|++| .+++
T Consensus 472 ~~l~~~np~K~~~~~~Li~~h-e~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~~~~i~v 545 (732)
T TIGR00603 472 MLLYVMNPNKFRACQFLIRFH-EQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQHNPKVNT 545 (732)
T ss_pred hHHhhhChHHHHHHHHHHHHH-hhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHhCCCccE
Confidence 011123334444455443 2357899999999999999998882 46799999999999999999975 7899
Q ss_pred EEEecccccccccCcccccccccceeEEEEcCCC-CCHHHHHHHhccCCCCCC
Q psy17912 429 LVSQYNKSQQERDRVLNEFRIGRASILVSQYKES-QQKRDRVLNEFRIGRASI 480 (779)
Q Consensus 429 LVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p-~s~~~yiQR~GRaGR~g~ 480 (779)
||+|+++.+|||+|.++ +||+++.| .+..+|+||+||++|.+.
T Consensus 546 Lv~SkVgdeGIDlP~a~---------vvI~~s~~~gS~~q~iQRlGRilR~~~ 589 (732)
T TIGR00603 546 IFLSKVGDTSIDLPEAN---------VLIQISSHYGSRRQEAQRLGRILRAKK 589 (732)
T ss_pred EEEecccccccCCCCCC---------EEEEeCCCCCCHHHHHHHhcccccCCC
Confidence 99999999999999999 99999987 599999999999999873
No 81
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=3.3e-28 Score=246.98 Aligned_cols=202 Identities=49% Similarity=0.826 Sum_probs=184.6
Q ss_pred CcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEcc
Q psy17912 130 FEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAP 209 (779)
Q Consensus 130 f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~P 209 (779)
|+++++++.+.+.+.++++..|+++|.++++.+.+++|+++++|||+|||++|++|++..+.... ..++++++|++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 67789999999999999999999999999999999999999999999999999999999888742 124789999999
Q ss_pred CHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhc
Q psy17912 210 TRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLD 289 (779)
Q Consensus 210 tr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~ 289 (779)
+++|+.|+.+.++.+....++.+..++|+....+....+..+++|+|+||+.|.+.+......+.+++++|+||||.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988888999999999888777677766799999999999999988878889999999999999998
Q ss_pred CCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEE
Q psy17912 290 MGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQL 334 (779)
Q Consensus 290 ~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i 334 (779)
.++...+..++..++++.|++++|||+++.+..++..++.+++.+
T Consensus 158 ~~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 158 MGFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred cChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 889999999999998899999999999999999999999888765
No 82
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=2.1e-27 Score=265.73 Aligned_cols=318 Identities=20% Similarity=0.228 Sum_probs=246.6
Q ss_pred HHHHHHHH-HcCCCCCCHHHHHHHHHHhcC------CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEcc
Q psy17912 137 PYIMKKIY-EMGFQAPTAIQAQGWPIALSG------CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAP 209 (779)
Q Consensus 137 ~~l~~~l~-~~g~~~p~~~Q~~~i~~il~g------~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~P 209 (779)
..+.+.+. .+.| +||..|++++.-|... .+-+++|..|||||+++++.++..+.. |.++..++|
T Consensus 249 ~~l~~~~~~~LPF-~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~--------G~Q~ALMAP 319 (677)
T COG1200 249 GELLAKFLAALPF-KLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEA--------GYQAALMAP 319 (677)
T ss_pred HHHHHHHHHhCCC-CccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHc--------CCeeEEecc
Confidence 33444443 3443 7899999999998854 367899999999999999999988765 778999999
Q ss_pred CHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHH---HhhcC-CeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch
Q psy17912 210 TRELAQQIETVANDFGSATATRVACVFGGAPKGPQVK---ALQTG-AEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD 285 (779)
Q Consensus 210 tr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~---~l~~~-~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH 285 (779)
|--||.|.+..+.++...+++++..++|......... .+..+ .+|+|+| +.|.++.+.++++.++|+||-|
T Consensus 320 TEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGT-----HALiQd~V~F~~LgLVIiDEQH 394 (677)
T COG1200 320 TEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGT-----HALIQDKVEFHNLGLVIIDEQH 394 (677)
T ss_pred HHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEc-----chhhhcceeecceeEEEEeccc
Confidence 9999999999999999999999999999876554433 33344 8999999 7777888899999999999999
Q ss_pred hhhcCCchHHHHHHHhhcCC-CCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHH
Q psy17912 286 RMLDMGFEPQIRKIIGQIRP-DRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQ 364 (779)
Q Consensus 286 ~l~~~~f~~~l~~il~~l~~-~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 364 (779)
+ |+-.-+..+..... .+.+++||||.-|. .++-....+.....+....+ -...+.-... ........+.
T Consensus 395 R-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPR--TLAlt~fgDldvS~IdElP~-GRkpI~T~~i--~~~~~~~v~e 464 (677)
T COG1200 395 R-----FGVHQRLALREKGEQNPHVLVMTATPIPR--TLALTAFGDLDVSIIDELPP-GRKPITTVVI--PHERRPEVYE 464 (677)
T ss_pred c-----ccHHHHHHHHHhCCCCCcEEEEeCCCchH--HHHHHHhccccchhhccCCC-CCCceEEEEe--ccccHHHHHH
Confidence 9 88777888877766 68899999997554 45555555544444444432 2233333322 2233334444
Q ss_pred HHHHHhccCCCCcEEEEecchh--------HHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy17912 365 GLLSQIGSERTSKTIIFVETKR--------KADDITRSVRNK--GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYN 434 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~~--------~ae~L~~~L~~~--g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v 434 (779)
.+.+++. .+.++.|.||-.+ .|+.+++.|+.. ++.+..+||.|+.++++++++.|++|+++|||||.+
T Consensus 465 ~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTV 542 (677)
T COG1200 465 RIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTV 542 (677)
T ss_pred HHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCCCcEEEEeeE
Confidence 4444543 5889999999765 455677777743 577999999999999999999999999999999999
Q ss_pred cccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcC
Q psy17912 435 KSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKS 488 (779)
Q Consensus 435 ~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~ 488 (779)
++.|||+|+.+ .+||.-..-.-+.++.|-.||+||.+...+|+...
T Consensus 543 IEVGVdVPnAT--------vMVIe~AERFGLaQLHQLRGRVGRG~~qSyC~Ll~ 588 (677)
T COG1200 543 IEVGVDVPNAT--------VMVIENAERFGLAQLHQLRGRVGRGDLQSYCVLLY 588 (677)
T ss_pred EEecccCCCCe--------EEEEechhhhhHHHHHHhccccCCCCcceEEEEEe
Confidence 99999999976 56666666778899999999999999877777643
No 83
>KOG0947|consensus
Probab=99.96 E-value=8.2e-28 Score=271.42 Aligned_cols=338 Identities=15% Similarity=0.137 Sum_probs=253.3
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
.+|.++|++||-++..|.+++|.|+|.+|||+++.+++...-. ++.+++|.+|-++|.+|.+..|+.-....
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~--------h~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQK--------HMTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHh--------hccceEecchhhhhccchHHHHHHhcccc
Confidence 3688999999999999999999999999999998877654322 24589999999999999998888765544
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCc
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 308 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~q 308 (779)
| .++|+..... .+.++|+|.|.|.++|.++.-.++++.+|||||+|.+.|...+..++.++-.+|++.+
T Consensus 368 g----LlTGDvqinP-------eAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~HV~ 436 (1248)
T KOG0947|consen 368 G----LLTGDVQINP-------EASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPRHVN 436 (1248)
T ss_pred c----eeecceeeCC-------CcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccccce
Confidence 4 6778765433 3789999999999999998888999999999999999999888899999999999999
Q ss_pred eEEeeccccHHHHHHHHHhc---cCcEEEecCCCCCCCcc-ceE-------------------------------EEEEe
Q psy17912 309 VLMWSATWPKEVQKLAEDFL---VDYVQLNIGSLNPTANH-NIV-------------------------------QIVDV 353 (779)
Q Consensus 309 illlSAT~~~~v~~l~~~~l---~~~~~i~i~~~~~~~~~-~i~-------------------------------~~~~~ 353 (779)
+|++|||+|+..+ ++.... ...+.+.-....+.... .+. ..+..
T Consensus 437 ~IlLSATVPN~~E-FA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~ 515 (1248)
T KOG0947|consen 437 FILLSATVPNTLE-FADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDV 515 (1248)
T ss_pred EEEEeccCCChHH-HHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhccccccccc
Confidence 9999999998653 333221 12222111111100000 000 00000
Q ss_pred cc----------------------------ccchh--HHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCC---
Q psy17912 354 CQ----------------------------EHEKD--YKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGW--- 400 (779)
Q Consensus 354 ~~----------------------------~~~k~--~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~--- 400 (779)
.. ...+. ..+..++..+....--|++|||-+++.|++.+++|....+
T Consensus 516 ~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~ 595 (1248)
T KOG0947|consen 516 EKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDS 595 (1248)
T ss_pred ccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccc
Confidence 00 00011 2477788887777778999999999999999999973211
Q ss_pred ------------------------------------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcc
Q psy17912 401 ------------------------------------AAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVL 444 (779)
Q Consensus 401 ------------------------------------~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v 444 (779)
.++++|||+-+--++-|...|..|-++||+||.++++|+|+|.-
T Consensus 596 ~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPAR 675 (1248)
T KOG0947|consen 596 KEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPAR 675 (1248)
T ss_pred hhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCce
Confidence 27899999999999999999999999999999999999999974
Q ss_pred cccccccceeEEEEc----C----CCCCHHHHHHHhccCCCCC--CeEEEEEcChH--HHHHHHHhhhccccceeecccc
Q psy17912 445 NEFRIGRASILVSQY----K----ESQQKRDRVLNEFRIGRAS--ILVSHYNKSQQ--ERDRVLNEFRIGRASILVSHYN 512 (779)
Q Consensus 445 ~~~~~~~~~~~VI~y----~----~p~s~~~yiQR~GRaGR~g--~~~~~~~~~~~--e~~~~l~e~~~~~~~il~~~~~ 512 (779)
. +|+.- | --..+-+|.||+|||||.| ..|+++.+... .....+.....|....++|+++
T Consensus 676 t---------vVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~vp~~a~l~~li~G~~~~L~SQFR 746 (1248)
T KOG0947|consen 676 T---------VVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDSVPSAATLKRLIMGGPTRLESQFR 746 (1248)
T ss_pred e---------EEeeehhhccCcceeecCChhHHhhhccccccccCcCceEEEEecCCCCCHHHHhhHhcCCCchhhhhhh
Confidence 4 44431 1 1235679999999999999 44555554433 3456788888888888888886
Q ss_pred ccH
Q psy17912 513 KSQ 515 (779)
Q Consensus 513 ~~~ 515 (779)
-+.
T Consensus 747 lTY 749 (1248)
T KOG0947|consen 747 LTY 749 (1248)
T ss_pred hHH
Confidence 443
No 84
>KOG0948|consensus
Probab=99.96 E-value=2.8e-28 Score=269.13 Aligned_cols=358 Identities=15% Similarity=0.124 Sum_probs=269.8
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
..+.|+|.+++..+-++.+++++|-|.+|||.++.+++...+... .+||+.+|-++|.+|.+.++..-...
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k--------QRVIYTSPIKALSNQKYREl~~EF~D- 198 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK--------QRVIYTSPIKALSNQKYRELLEEFKD- 198 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc--------CeEEeeChhhhhcchhHHHHHHHhcc-
Confidence 467899999999999999999999999999999999988887763 38999999999999999988765444
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCc
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 308 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~q 308 (779)
|+.++|+..... .+..+|+|.|.|..++.++.-.++.+.+|||||+|.|-|...+-.++.-+-.++++.+
T Consensus 199 ---VGLMTGDVTInP-------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr 268 (1041)
T KOG0948|consen 199 ---VGLMTGDVTINP-------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLPDNVR 268 (1041)
T ss_pred ---cceeecceeeCC-------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEeccccce
Confidence 455667665433 3689999999999999999888999999999999999998877777788888899999
Q ss_pred eEEeeccccHHHH--HHHHHhccCcEEEecCCCCCCCccceEE------EEEecccc--c--------------------
Q psy17912 309 VLMWSATWPKEVQ--KLAEDFLVDYVQLNIGSLNPTANHNIVQ------IVDVCQEH--E-------------------- 358 (779)
Q Consensus 309 illlSAT~~~~v~--~l~~~~l~~~~~i~i~~~~~~~~~~i~~------~~~~~~~~--~-------------------- 358 (779)
.+++|||+|+..+ +++...-..|.++......++..++... .+.++++. -
T Consensus 269 ~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~ 348 (1041)
T KOG0948|consen 269 FVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDG 348 (1041)
T ss_pred EEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcc
Confidence 9999999998643 3444555677777766655444332211 11111110 0
Q ss_pred ------------------hhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCC--------------------
Q psy17912 359 ------------------KDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGW-------------------- 400 (779)
Q Consensus 359 ------------------k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~-------------------- 400 (779)
-...+..+++.+......|+|||+-++++|+.+|-.+.+..+
T Consensus 349 ~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 349 KKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 011455666666666778999999999999999988874321
Q ss_pred -------------------eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEE----
Q psy17912 401 -------------------AAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVS---- 457 (779)
Q Consensus 401 -------------------~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI---- 457 (779)
.++.+|+|+-+--++-|.-.|.+|-+++|+||.+++.|+|+|.-. +|.
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkT---------VvFT~~r 499 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKT---------VVFTAVR 499 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCccee---------EEEeecc
Confidence 278999999999999999999999999999999999999999754 222
Q ss_pred EcCCC----CCHHHHHHHhccCCCCC--CeEEEEEc-ChHHHHHHHHhhhccccceeeccccccHHHHHHhhhhhc--cc
Q psy17912 458 QYKES----QQKRDRVLNEFRIGRAS--ILVSHYNK-SQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR--IG 528 (779)
Q Consensus 458 ~y~~p----~s~~~yiQR~GRaGR~g--~~~~~~~~-~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~--~~ 528 (779)
-||-. -+--+|+||+|||||.| ..|+++.+ .++...........|.+..+.|.+....+ .+||.++ -+
T Consensus 500 KfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhLtYn---MiLNLlRvEei 576 (1041)
T KOG0948|consen 500 KFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHLTYN---MILNLLRVEEI 576 (1041)
T ss_pred ccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhhHHH---HHHHHHHHccC
Confidence 12221 13458999999999999 34555544 44455667888888888888887755443 3444443 33
Q ss_pred ccchhhhcc
Q psy17912 529 RASILVSHY 537 (779)
Q Consensus 529 ~~~~~~~~~ 537 (779)
.++..+.+.
T Consensus 577 ~pe~~l~~S 585 (1041)
T KOG0948|consen 577 SPEYMLERS 585 (1041)
T ss_pred CHHHHHHHH
Confidence 444555553
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.96 E-value=5.7e-27 Score=276.45 Aligned_cols=310 Identities=18% Similarity=0.145 Sum_probs=215.0
Q ss_pred CCCCHHHHHHHHHHhcC---CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 149 QAPTAIQAQGWPIALSG---CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g---~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
..+++.|+++++.+.++ +++++.++||||||.+|+.++...+.. +.++||++|+++|+.|+.+.+++..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~--------g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ--------GKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36899999999999874 789999999999999998887766643 5589999999999999999998753
Q ss_pred ccCCceEEEEeCCCCChhhHHHh----hcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC---chHHHHH
Q psy17912 226 SATATRVACVFGGAPKGPQVKAL----QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG---FEPQIRK 298 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l----~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~---f~~~l~~ 298 (779)
+..+..++|+.+..+....+ ...++|+|+|+..+. ..++++++|||||+|...-+. .......
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~ 284 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARD 284 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCCcHHH
Confidence 56788899988765443322 245799999997653 357889999999999755332 1111222
Q ss_pred --HHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccc------cchhHHHHHHHHHh
Q psy17912 299 --IIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQE------HEKDYKLQGLLSQI 370 (779)
Q Consensus 299 --il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~------~~k~~~L~~ll~~i 370 (779)
++.....+.+++++|||.+.+....+..- ....+................+..... ..-...+.+.+++.
T Consensus 285 va~~ra~~~~~~~il~SATps~~s~~~~~~g--~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~ 362 (679)
T PRK05580 285 LAVVRAKLENIPVVLGSATPSLESLANAQQG--RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQR 362 (679)
T ss_pred HHHHHhhccCCCEEEEcCCCCHHHHHHHhcc--ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHH
Confidence 23334568899999999876654444321 222222211110011111112221110 00112233333332
Q ss_pred ccCCCCcEEEEecch------------------------------------------------------------hHHHH
Q psy17912 371 GSERTSKTIIFVETK------------------------------------------------------------RKADD 390 (779)
Q Consensus 371 ~~~~~~kvLVF~~s~------------------------------------------------------------~~ae~ 390 (779)
. ..+.++|||+|.+ ..++.
T Consensus 363 l-~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~ 441 (679)
T PRK05580 363 L-ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTER 441 (679)
T ss_pred H-HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHH
Confidence 2 2467899998752 25678
Q ss_pred HHHHHHhC--CCeEEEEcCCCCH--HHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCC--
Q psy17912 391 ITRSVRNK--GWAAVAIHGNKSQ--QERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQ-- 464 (779)
Q Consensus 391 L~~~L~~~--g~~v~~ihg~~~~--~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s-- 464 (779)
+++.|.+. +.++..+|+++.+ .+++++++.|++|+.+|||+|+++++|+|+|++. .+.|++.|.+.+
T Consensus 442 ~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~-------lV~il~aD~~l~~p 514 (679)
T PRK05580 442 LEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVT-------LVGVLDADLGLFSP 514 (679)
T ss_pred HHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcC-------EEEEEcCchhccCC
Confidence 88888876 7889999999874 6799999999999999999999999999999988 334466665543
Q ss_pred --------HHHHHHHhccCCCCCCeEEEEE
Q psy17912 465 --------KRDRVLNEFRIGRASILVSHYN 486 (779)
Q Consensus 465 --------~~~yiQR~GRaGR~g~~~~~~~ 486 (779)
...|+|++||+||.+..+.++.
T Consensus 515 dfra~Er~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 515 DFRASERTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred ccchHHHHHHHHHHHHhhccCCCCCCEEEE
Confidence 3678999999999887776553
No 86
>PRK09694 helicase Cas3; Provisional
Probab=99.95 E-value=1.6e-26 Score=274.64 Aligned_cols=313 Identities=15% Similarity=0.130 Sum_probs=203.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc
Q psy17912 147 GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 147 g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 226 (779)
+...|+|+|+.+.........+|+.+|||+|||.++++.+...+.. +....++|..||+++++++++.+.++..
T Consensus 283 ~~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~~------~~~~gi~~aLPT~Atan~m~~Rl~~~~~ 356 (878)
T PRK09694 283 NGYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLIDQ------GLADSIIFALPTQATANAMLSRLEALAS 356 (878)
T ss_pred CCCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHHh------CCCCeEEEECcHHHHHHHHHHHHHHHHH
Confidence 3458999999886554556679999999999999988776654432 1235799999999999999998876433
Q ss_pred cC--CceEEEEeCCCCChhhH---------------------HHhh---c---CCeEEEeChHHHHHHHHcCC-cCCCCe
Q psy17912 227 AT--ATRVACVFGGAPKGPQV---------------------KALQ---T---GAEIVIATPGRLIDYLEQGT-INLHRT 276 (779)
Q Consensus 227 ~~--~l~v~~~~gg~~~~~~~---------------------~~l~---~---~~~IiV~Tpe~Ll~~l~~~~-~~l~~i 276 (779)
.. ...+..++|........ .-+. + -.+|+|||+.+++..+.... ..++.+
T Consensus 357 ~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~ 436 (878)
T PRK09694 357 KLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGF 436 (878)
T ss_pred HhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHH
Confidence 21 34566666654321110 0011 1 16899999999886554322 222223
Q ss_pred ----eEEEEccchhhhcCCchHHHHHHHhhc-CCCCceEEeeccccHHHHHHHH-HhccC-cEE-------Ee-cCC---
Q psy17912 277 ----SYLVLDEADRMLDMGFEPQIRKIIGQI-RPDRQVLMWSATWPKEVQKLAE-DFLVD-YVQ-------LN-IGS--- 338 (779)
Q Consensus 277 ----~~lViDEaH~l~~~~f~~~l~~il~~l-~~~~qilllSAT~~~~v~~l~~-~~l~~-~~~-------i~-i~~--- 338 (779)
++|||||+|..-. .....+..+++.+ ....++|+||||+|...++.+. .+... +.. +. ...
T Consensus 437 ~La~svvIiDEVHAyD~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~ 515 (878)
T PRK09694 437 GLGRSVLIVDEVHAYDA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGA 515 (878)
T ss_pred hhccCeEEEechhhCCH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccc
Confidence 5899999997532 2233444454443 2467899999999988765433 33111 000 00 000
Q ss_pred --CCCCC-----ccceEEEEEec--cc-cchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCC---CeEEEE
Q psy17912 339 --LNPTA-----NHNIVQIVDVC--QE-HEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKG---WAAVAI 405 (779)
Q Consensus 339 --~~~~~-----~~~i~~~~~~~--~~-~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g---~~v~~i 405 (779)
..... .......+... .. ......+..+++.+ ..++++||||||++.|+.+++.|++.+ .++..+
T Consensus 516 ~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~ll 593 (878)
T PRK09694 516 QRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLF 593 (878)
T ss_pred eeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEE
Confidence 00000 00000011111 11 11122333344433 246889999999999999999999764 679999
Q ss_pred cCCCCHHHH----HHHHHHH-hcCC---CcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCC
Q psy17912 406 HGNKSQQER----DRVLNEF-RIGR---ASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGR 477 (779)
Q Consensus 406 hg~~~~~eR----~~il~~F-~~G~---~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR 477 (779)
||.++..+| +++++.| ++|+ ..|||||+++++|||++ ++ ++|....| +..++||+||+||
T Consensus 594 Hsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~D---------vlItdlaP--idsLiQRaGR~~R 661 (878)
T PRK09694 594 HARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FD---------WLITQLCP--VDLLFQRLGRLHR 661 (878)
T ss_pred eCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CC---------eEEECCCC--HHHHHHHHhccCC
Confidence 999999999 4567788 6666 47999999999999984 45 77777777 7899999999999
Q ss_pred CCC
Q psy17912 478 ASI 480 (779)
Q Consensus 478 ~g~ 480 (779)
.+.
T Consensus 662 ~~~ 664 (878)
T PRK09694 662 HHR 664 (878)
T ss_pred CCC
Confidence 874
No 87
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.95 E-value=7.6e-27 Score=274.43 Aligned_cols=350 Identities=15% Similarity=0.145 Sum_probs=257.2
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 229 (779)
.|.++|++++..+..+.+++++||||+|||++..+++...+.. +.++++++|.++|.+|.+..+........
T Consensus 119 ~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~--------~qrviYTsPIKALsNQKyrdl~~~fgdv~ 190 (1041)
T COG4581 119 ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD--------GQRVIYTSPIKALSNQKYRDLLAKFGDVA 190 (1041)
T ss_pred CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHc--------CCceEeccchhhhhhhHHHHHHHHhhhhh
Confidence 6899999999999999999999999999999998888777665 44699999999999999988766543322
Q ss_pred ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCce
Q psy17912 230 TRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQV 309 (779)
Q Consensus 230 l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qi 309 (779)
-.++.++|+.+.. .++.|+|+|.|.|.+++..+...+..+..|||||+|.|.+...+...+.++..++.+.++
T Consensus 191 ~~vGL~TGDv~IN-------~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v~~ 263 (1041)
T COG4581 191 DMVGLMTGDVSIN-------PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHVRF 263 (1041)
T ss_pred hhccceecceeeC-------CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCCCCcE
Confidence 3356677776554 347999999999999999988889999999999999999999999999999999999999
Q ss_pred EEeeccccHHH--HHHHHHhccCcEEEecCCCCCCCccceE----EEEEeccccch------------------------
Q psy17912 310 LMWSATWPKEV--QKLAEDFLVDYVQLNIGSLNPTANHNIV----QIVDVCQEHEK------------------------ 359 (779)
Q Consensus 310 lllSAT~~~~v--~~l~~~~l~~~~~i~i~~~~~~~~~~i~----~~~~~~~~~~k------------------------ 359 (779)
++||||+|+.. ..++...-..++.+......+....... ..+..+++..+
T Consensus 264 v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~ 343 (1041)
T COG4581 264 VFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETD 343 (1041)
T ss_pred EEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccC
Confidence 99999998753 2233332334554444333322111100 00111111100
Q ss_pred --------------------hHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHh----------------------
Q psy17912 360 --------------------DYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRN---------------------- 397 (779)
Q Consensus 360 --------------------~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~---------------------- 397 (779)
......+++.+.....-++|+|+-+++.|+..+..+..
T Consensus 344 ~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~ 423 (1041)
T COG4581 344 DGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIG 423 (1041)
T ss_pred ccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHh
Confidence 00112244444444567899999999999998888761
Q ss_pred ------CCCe-------------EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEE-
Q psy17912 398 ------KGWA-------------AVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVS- 457 (779)
Q Consensus 398 ------~g~~-------------v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI- 457 (779)
.+++ ++++|+||-+..+..+.+.|..|.++||+||.+++.|+|+|.-. +|+
T Consensus 424 ~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPart---------vv~~ 494 (1041)
T COG4581 424 DLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPART---------VVFT 494 (1041)
T ss_pred hcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccc---------eeee
Confidence 1121 56899999999999999999999999999999999999999754 222
Q ss_pred ---EcC----CCCCHHHHHHHhccCCCCC--CeEEEEEcChHHH--HHHHHhhhccccceeeccccccHHHHHHhhh
Q psy17912 458 ---QYK----ESQQKRDRVLNEFRIGRAS--ILVSHYNKSQQER--DRVLNEFRIGRASILVSHYNKSQQERDRVLN 523 (779)
Q Consensus 458 ---~y~----~p~s~~~yiQR~GRaGR~g--~~~~~~~~~~~e~--~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~ 523 (779)
.|+ ...+..+|+|++|||||.| ..|.+++...+.. ......+..++...+.+.+...-...-.++.
T Consensus 495 ~l~K~dG~~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~~~~~~~~e~~~l~~~~~~~L~s~f~~sy~milnll~ 571 (1041)
T COG4581 495 SLSKFDGNGHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILNLLR 571 (1041)
T ss_pred eeEEecCCceeecChhHHHHhhhhhccccccccceEEEecCCCCCChHHHHHhhcCCCccchhheecchhHHHhhhh
Confidence 222 3568899999999999999 4455555422222 5567778888888888888766554444433
No 88
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.95 E-value=9.5e-26 Score=265.16 Aligned_cols=320 Identities=18% Similarity=0.155 Sum_probs=259.7
Q ss_pred CHHHHHHHHH-cCCCCCCHHHHHHHHHHhc----C--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc
Q psy17912 136 PPYIMKKIYE-MGFQAPTAIQAQGWPIALS----G--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA 208 (779)
Q Consensus 136 ~~~l~~~l~~-~g~~~p~~~Q~~~i~~il~----g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~ 208 (779)
+....+.+.. +.| .-||-|..||..+.+ + .|-++||..|.|||.+++-+++..+.. |++|.|+|
T Consensus 580 d~~~q~~F~~~FPy-eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~--------GKQVAvLV 650 (1139)
T COG1197 580 DTEWQEEFEASFPY-EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMD--------GKQVAVLV 650 (1139)
T ss_pred ChHHHHHHHhcCCC-cCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcC--------CCeEEEEc
Confidence 4445555554 333 569999999999873 3 489999999999999999999987765 67999999
Q ss_pred cCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhh----cCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccc
Q psy17912 209 PTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQ----TGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEA 284 (779)
Q Consensus 209 Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~----~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEa 284 (779)
||.-||+|.++.|++....+++++..+..-.+..++...+. ...||||+| +.|-+..+.++++++|||||=
T Consensus 651 PTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGT-----HrLL~kdv~FkdLGLlIIDEE 725 (1139)
T COG1197 651 PTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGT-----HRLLSKDVKFKDLGLLIIDEE 725 (1139)
T ss_pred ccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEec-----hHhhCCCcEEecCCeEEEech
Confidence 99999999999999999999999999887777776654443 358999999 555577888999999999999
Q ss_pred hhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHH
Q psy17912 285 DRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQ 364 (779)
Q Consensus 285 H~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 364 (779)
|+ |+-.-+.-++.++.+.-++-||||.-|....++..-+++...+...+.+ ...+.-+ +.+.+....-.
T Consensus 726 qR-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~---R~pV~T~---V~~~d~~~ire 794 (1139)
T COG1197 726 QR-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPED---RLPVKTF---VSEYDDLLIRE 794 (1139)
T ss_pred hh-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCC---CcceEEE---EecCChHHHHH
Confidence 99 7878888889999999999999998666666666666665555443333 2223322 23333333344
Q ss_pred HHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccC
Q psy17912 365 GLLSQIGSERTSKTIIFVETKRKADDITRSVRNK--GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDR 442 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~--g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip 442 (779)
.++.++. .++++-..+|..+..+.+++.|+.. ..++++.||.|+..+-++++..|-+|+.+|||||.+++.|||+|
T Consensus 795 AI~REl~--RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIP 872 (1139)
T COG1197 795 AILRELL--RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIP 872 (1139)
T ss_pred HHHHHHh--cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCC
Confidence 4555553 5789999999999999999999986 56799999999999999999999999999999999999999999
Q ss_pred cccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChH
Q psy17912 443 VLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQ 490 (779)
Q Consensus 443 ~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~ 490 (779)
++| .++|+-..-.-+.++.|-.||+||....+++|...+.
T Consensus 873 nAN--------TiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~ 912 (1139)
T COG1197 873 NAN--------TIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPP 912 (1139)
T ss_pred CCc--------eEEEeccccccHHHHHHhccccCCccceEEEEEeecC
Confidence 988 5677767777899999999999999999999987653
No 89
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.95 E-value=4.8e-26 Score=265.04 Aligned_cols=314 Identities=15% Similarity=0.151 Sum_probs=215.9
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
-.|+++|.-.--.+..|+ |+.++||+|||++|.+|++..+.. +..++||+||++||.|.++++..+...+
T Consensus 81 ~~~ydvQliGg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 81 LRHFDVQLIGGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred CCcchHHHhhhhhhccCc--cccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 356777776665555554 899999999999999999987754 3358999999999999999999999999
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcCC-cCC-----CCeeEEEEccchhhhcCC----------
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQGT-INL-----HRTSYLVLDEADRMLDMG---------- 291 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~~-~~l-----~~i~~lViDEaH~l~~~~---------- 291 (779)
++.+.+++|+.+........ .++|+|+||++| .+++..+. +.+ +.+.++||||||.|+-..
T Consensus 151 GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPLIISg~ 228 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPLIISGA 228 (896)
T ss_pred CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCceeeeCC
Confidence 99999999998766554433 589999999999 99997662 333 589999999999776321
Q ss_pred ------chHHHHHHHhhcCC--------------CCceEEeecc------------------------------------
Q psy17912 292 ------FEPQIRKIIGQIRP--------------DRQVLMWSAT------------------------------------ 315 (779)
Q Consensus 292 ------f~~~l~~il~~l~~--------------~~qilllSAT------------------------------------ 315 (779)
+...+..++..+.+ ..+.+.+|-.
T Consensus 229 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~~i~~a 308 (896)
T PRK13104 229 AEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMHHVNAA 308 (896)
T ss_pred CccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHHHHHHH
Confidence 11112222222211 1222333322
Q ss_pred --------------------------------------------------------------------------------
Q psy17912 316 -------------------------------------------------------------------------------- 315 (779)
Q Consensus 316 -------------------------------------------------------------------------------- 315 (779)
T Consensus 309 L~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLsGMTGT 388 (896)
T PRK13104 309 LKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLSGMTGT 388 (896)
T ss_pred HHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhccCCCC
Confidence
Q ss_pred ccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHH
Q psy17912 316 WPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSV 395 (779)
Q Consensus 316 ~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L 395 (779)
...+..++..-|..+.+.+. ...+...... ....+.....|...+.+.+..+ ...+.|+||||+|++.++.|+..|
T Consensus 389 a~te~~Ef~~iY~l~Vv~IP--tnkp~~R~d~-~d~v~~t~~~k~~av~~~i~~~-~~~g~PVLVgt~Sie~sE~ls~~L 464 (896)
T PRK13104 389 ADTEAYEFQQIYNLEVVVIP--TNRSMIRKDE-ADLVYLTQADKFQAIIEDVREC-GVRKQPVLVGTVSIEASEFLSQLL 464 (896)
T ss_pred ChhHHHHHHHHhCCCEEECC--CCCCcceecC-CCeEEcCHHHHHHHHHHHHHHH-HhCCCCEEEEeCcHHHHHHHHHHH
Confidence 11111111111111111110 0000000000 0112233344555555555544 346899999999999999999999
Q ss_pred HhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcc-------------------------------
Q psy17912 396 RNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVL------------------------------- 444 (779)
Q Consensus 396 ~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v------------------------------- 444 (779)
.+.|+++..+|+.+.+.++..+.+.|+.| .|+|||++|+||+|+.--
T Consensus 465 ~~~gi~h~vLnak~~q~Ea~iia~Ag~~G--~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (896)
T PRK13104 465 KKENIKHQVLNAKFHEKEAQIIAEAGRPG--AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHD 542 (896)
T ss_pred HHcCCCeEeecCCCChHHHHHHHhCCCCC--cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999 499999999999997631
Q ss_pred cccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeE
Q psy17912 445 NEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 445 ~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~ 482 (779)
.+-.++. .+||-...+.|-.-=-|-.||+||-|.+|
T Consensus 543 ~V~~~GG--L~VIgTerhesrRID~QLrGRaGRQGDPG 578 (896)
T PRK13104 543 EVIAAGG--LRIIGSERHESRRIDNQLRGRAGRQGDPG 578 (896)
T ss_pred HHHHcCC--CEEEeeccCchHHHHHHhccccccCCCCC
Confidence 0112222 36777777888777789999999999777
No 90
>KOG0951|consensus
Probab=99.95 E-value=4e-26 Score=263.36 Aligned_cols=326 Identities=17% Similarity=0.191 Sum_probs=236.8
Q ss_pred CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEccCCCChhHHHHHHHHHHHhccCCCCC---CCCCEEEEEcc
Q psy17912 134 NFPPYIMKKIYEMGFQAPTAIQAQGWPIALSG-CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRS---GEGPIVLVLAP 209 (779)
Q Consensus 134 ~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g-~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~---~~~~~vLil~P 209 (779)
.+|.+-..++. |..++.++|..+.+.++.+ .++++|||||+|||.++++-+++.+........ -...++++++|
T Consensus 295 elP~Wnq~aF~--g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAP 372 (1674)
T KOG0951|consen 295 ELPKWNQPAFF--GKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAP 372 (1674)
T ss_pred CCcchhhhhcc--cchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEee
Confidence 35666666653 7778999999999999866 589999999999999999999998877543211 22358999999
Q ss_pred CHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcC-C-cCCCCeeEEEEccchhh
Q psy17912 210 TRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQG-T-INLHRTSYLVLDEADRM 287 (779)
Q Consensus 210 tr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~-~-~~l~~i~~lViDEaH~l 287 (779)
.++|++.+...+.+....+|+.|..++|+.....+. ..+..|+|||||..--.-.++ . -..+-++++|+||+|.+
T Consensus 373 mKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~q---ieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLL 449 (1674)
T KOG0951|consen 373 MKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQ---IEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLL 449 (1674)
T ss_pred HHHHHHHHHHHHHhhccccCcEEEEecccccchhhh---hhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhc
Confidence 999999999999998899999999999987643221 123689999999874333221 1 23446789999999975
Q ss_pred hcCCchHHHHHHHhhc-------CCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchh
Q psy17912 288 LDMGFEPQIRKIIGQI-------RPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKD 360 (779)
Q Consensus 288 ~~~~f~~~l~~il~~l-------~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~ 360 (779)
-|. .++.++.|+... ....+++++|||+|+- .....|+.-+..-.........+-.+.|.+.-+.+....
T Consensus 450 hDd-RGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy--~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~ek~~~ 526 (1674)
T KOG0951|consen 450 HDD-RGPVLESIVARTFRRSESTEEGSRLVGLSATLPNY--EDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGITEKKPL 526 (1674)
T ss_pred ccc-cchHHHHHHHHHHHHhhhcccCceeeeecccCCch--hhhHHHhccCcccccccCcccCcCCccceEeccccCCch
Confidence 443 566666665433 2468999999999974 334444432221111111122333455555555444333
Q ss_pred HH--------HHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHh-----------------------------------
Q psy17912 361 YK--------LQGLLSQIGSERTSKTIIFVETKRKADDITRSVRN----------------------------------- 397 (779)
Q Consensus 361 ~~--------L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~----------------------------------- 397 (779)
.. ..++++. ...++|||||.+++++-+.|+.++.
T Consensus 527 ~~~qamNe~~yeKVm~~---agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLk 603 (1674)
T KOG0951|consen 527 KRFQAMNEACYEKVLEH---AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLK 603 (1674)
T ss_pred HHHHHHHHHHHHHHHHh---CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHH
Confidence 33 2222322 2458999999999999988888872
Q ss_pred --CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEE----EcC------CCCCH
Q psy17912 398 --KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVS----QYK------ESQQK 465 (779)
Q Consensus 398 --~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI----~y~------~p~s~ 465 (779)
..+.++.+|+||+..+|..+.+.|+.|.++|||+|..+++|++.|.-. ++| -|+ .+.++
T Consensus 604 dLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpaht---------Viikgtqvy~pekg~w~elsp 674 (1674)
T KOG0951|consen 604 DLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHT---------VIIKGTQVYDPEKGRWTELSP 674 (1674)
T ss_pred HHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcce---------EEecCccccCcccCccccCCH
Confidence 024588999999999999999999999999999999999999999754 322 133 46689
Q ss_pred HHHHHHhccCCCCC
Q psy17912 466 RDRVLNEFRIGRAS 479 (779)
Q Consensus 466 ~~yiQR~GRaGR~g 479 (779)
.+.+||.|||||.+
T Consensus 675 ~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 675 LDVMQMLGRAGRPQ 688 (1674)
T ss_pred HHHHHHHhhcCCCc
Confidence 99999999999987
No 91
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.95 E-value=3.1e-25 Score=265.14 Aligned_cols=311 Identities=15% Similarity=0.048 Sum_probs=198.5
Q ss_pred CCCHHHHHHHHHHhcC--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhccc
Q psy17912 150 APTAIQAQGWPIALSG--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSA 227 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 227 (779)
.|.|+|.+++..++.. ..+++..++|.|||..+.+.+...+... ...++|||||. .|..||..++.+..
T Consensus 152 ~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g------~~~rvLIVvP~-sL~~QW~~El~~kF-- 222 (956)
T PRK04914 152 SLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG------RAERVLILVPE-TLQHQWLVEMLRRF-- 222 (956)
T ss_pred CCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC------CCCcEEEEcCH-HHHHHHHHHHHHHh--
Confidence 5899999999877644 3689999999999988876665544432 23479999997 89999998885432
Q ss_pred CCceEEEEeCCCCChh--hHHHhhcCCeEEEeChHHHHHHHH-cCCcCCCCeeEEEEccchhhhcCC--chHHHHHHHhh
Q psy17912 228 TATRVACVFGGAPKGP--QVKALQTGAEIVIATPGRLIDYLE-QGTINLHRTSYLVLDEADRMLDMG--FEPQIRKIIGQ 302 (779)
Q Consensus 228 ~~l~v~~~~gg~~~~~--~~~~l~~~~~IiV~Tpe~Ll~~l~-~~~~~l~~i~~lViDEaH~l~~~~--f~~~l~~il~~ 302 (779)
++....+.+...... .........+++|+|.+.+...-. ...+.-..+++|||||||++.... -...+..+...
T Consensus 223 -~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~L 301 (956)
T PRK04914 223 -NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQL 301 (956)
T ss_pred -CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHH
Confidence 344433333221100 000112246899999987664110 111223478999999999986321 12223333222
Q ss_pred cCCCCceEEeeccccH----HH---------------HHHH-------------H-----------------HhccCcE-
Q psy17912 303 IRPDRQVLMWSATWPK----EV---------------QKLA-------------E-----------------DFLVDYV- 332 (779)
Q Consensus 303 l~~~~qilllSAT~~~----~v---------------~~l~-------------~-----------------~~l~~~~- 332 (779)
......++++|||+-. +. ..+. . .++.+..
T Consensus 302 a~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~~~~ 381 (956)
T PRK04914 302 AEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGEQDI 381 (956)
T ss_pred hhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcccch
Confidence 2234578999999420 00 0000 0 0000000
Q ss_pred --------------------------------EEecCCCCC---CCccceEEEEEe-c----------------------
Q psy17912 333 --------------------------------QLNIGSLNP---TANHNIVQIVDV-C---------------------- 354 (779)
Q Consensus 333 --------------------------------~i~i~~~~~---~~~~~i~~~~~~-~---------------------- 354 (779)
.+.+..... .......+.+.. .
T Consensus 382 ~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~l~p 461 (956)
T PRK04914 382 EPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDMLYP 461 (956)
T ss_pred hHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhhcCH
Confidence 000000000 000000000000 0
Q ss_pred --------------cccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHH-hCCCeEEEEcCCCCHHHHHHHHH
Q psy17912 355 --------------QEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVR-NKGWAAVAIHGNKSQQERDRVLN 419 (779)
Q Consensus 355 --------------~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~-~~g~~v~~ihg~~~~~eR~~il~ 419 (779)
....|...|.++++ .....|+||||+++..++.|++.|+ ..|+.+..+||+|++.+|.++++
T Consensus 462 e~~~~~~~~~~~~~~~d~Ki~~L~~~L~---~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~ 538 (956)
T PRK04914 462 EQIYQEFEDNATWWNFDPRVEWLIDFLK---SHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAA 538 (956)
T ss_pred HHHHHHHhhhhhccccCHHHHHHHHHHH---hcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHH
Confidence 00112223333333 3347899999999999999999995 66999999999999999999999
Q ss_pred HHhcC--CCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeE
Q psy17912 420 EFRIG--RASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 420 ~F~~G--~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~ 482 (779)
.|+++ ..+|||||+++++|+|++.++ +||+||+|+++..|.||+||++|.|..+
T Consensus 539 ~F~~~~~~~~VLIsTdvgseGlNlq~a~---------~VInfDlP~nP~~~eQRIGR~~RiGQ~~ 594 (956)
T PRK04914 539 YFADEEDGAQVLLCSEIGSEGRNFQFAS---------HLVLFDLPFNPDLLEQRIGRLDRIGQKH 594 (956)
T ss_pred HHhcCCCCccEEEechhhccCCCccccc---------EEEEecCCCCHHHHHHHhcccccCCCCc
Confidence 99974 699999999999999999988 9999999999999999999999998544
No 92
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=3.8e-26 Score=257.37 Aligned_cols=294 Identities=20% Similarity=0.185 Sum_probs=200.5
Q ss_pred CCCCCHHHHHHHHHHhc----CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHH
Q psy17912 148 FQAPTAIQAQGWPIALS----GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAND 223 (779)
Q Consensus 148 ~~~p~~~Q~~~i~~il~----g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 223 (779)
...|+++|++++..+.+ .+..++++|||+|||.+++..+... . ..+|||+|+++|+.|+.+.+.+
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-~----------~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-K----------RSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-c----------CCEEEEECcHHHHHHHHHHHHH
Confidence 34699999999999998 8899999999999997766544432 1 1399999999999999877776
Q ss_pred hcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc
Q psy17912 224 FGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI 303 (779)
Q Consensus 224 ~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l 303 (779)
+.... ..++ .+|+...... . ..|+|+|.+.+........+....+++|||||||++.... +..+...+
T Consensus 103 ~~~~~-~~~g-~~~~~~~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~~----~~~~~~~~ 170 (442)
T COG1061 103 FLLLN-DEIG-IYGGGEKELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAPS----YRRILELL 170 (442)
T ss_pred hcCCc-cccc-eecCceeccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcHH----HHHHHHhh
Confidence 64322 1223 3333222111 1 3699999988877421122334479999999999988553 34444444
Q ss_pred CCCCceEEeeccccHHHHHH---HHHhccCcEEEecCCCCC---CCccceEEEEEec--c--------------------
Q psy17912 304 RPDRQVLMWSATWPKEVQKL---AEDFLVDYVQLNIGSLNP---TANHNIVQIVDVC--Q-------------------- 355 (779)
Q Consensus 304 ~~~~qilllSAT~~~~v~~l---~~~~l~~~~~i~i~~~~~---~~~~~i~~~~~~~--~-------------------- 355 (779)
.....+++||||++...... +..++ .++.......+. ............. .
T Consensus 171 ~~~~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~ 249 (442)
T COG1061 171 SAAYPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRA 249 (442)
T ss_pred hcccceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhh
Confidence 33333999999976332111 11111 122222211100 0000001110000 0
Q ss_pred ----------------ccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHH
Q psy17912 356 ----------------EHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLN 419 (779)
Q Consensus 356 ----------------~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~ 419 (779)
...+...+..++.... ...+++|||.+..+++.++..|...++ +..+.+..+..+|..+++
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 250 RGTLRAENEARRIAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred hhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHH
Confidence 0011111222222211 467999999999999999999998888 899999999999999999
Q ss_pred HHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCC
Q psy17912 420 EFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGR 477 (779)
Q Consensus 420 ~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR 477 (779)
.|+.|++++||++.++.+|+|+|.++ ++|.-.+..+...|+||+||.-|
T Consensus 327 ~fr~g~~~~lv~~~vl~EGvDiP~~~---------~~i~~~~t~S~~~~~Q~lGR~LR 375 (442)
T COG1061 327 RFRTGGIKVLVTVKVLDEGVDIPDAD---------VLIILRPTGSRRLFIQRLGRGLR 375 (442)
T ss_pred HHHcCCCCEEEEeeeccceecCCCCc---------EEEEeCCCCcHHHHHHHhhhhcc
Confidence 99999999999999999999999998 88888889999999999999999
No 93
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=1.9e-25 Score=260.10 Aligned_cols=314 Identities=17% Similarity=0.159 Sum_probs=226.0
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
..|+++|.-..-.+..|+ |+.++||+|||+++.+|++..... |..+-|++||..||.|.++.+..+...+
T Consensus 80 ~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 467888888877776664 999999999999999999754443 2247799999999999999999999999
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcCC------cCCCCeeEEEEccchhhhcCC----------
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQGT------INLHRTSYLVLDEADRMLDMG---------- 291 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~~------~~l~~i~~lViDEaH~l~~~~---------- 291 (779)
|++++++.|+.+..++.... .++|+|+||..| .+++..+. ..++.+.++||||||.|+-..
T Consensus 150 Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~ 227 (830)
T PRK12904 150 GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTPLIISGP 227 (830)
T ss_pred CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCceeeECC
Confidence 99999999988876655543 489999999999 89987654 246789999999999776311
Q ss_pred ------chHHHHHHHhhcCC--------C---------------------------------------------------
Q psy17912 292 ------FEPQIRKIIGQIRP--------D--------------------------------------------------- 306 (779)
Q Consensus 292 ------f~~~l~~il~~l~~--------~--------------------------------------------------- 306 (779)
+...+..++..+.. .
T Consensus 228 ~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dY 307 (830)
T PRK12904 228 AEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDY 307 (830)
T ss_pred CCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcE
Confidence 11112222222211 0
Q ss_pred ----------------------------------------------------------CceEEeeccccHHHHHHHHHhc
Q psy17912 307 ----------------------------------------------------------RQVLMWSATWPKEVQKLAEDFL 328 (779)
Q Consensus 307 ----------------------------------------------------------~qilllSAT~~~~v~~l~~~~l 328 (779)
.++.+||.|+..+..++...|.
T Consensus 308 iV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~ 387 (830)
T PRK12904 308 IVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYN 387 (830)
T ss_pred EEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhC
Confidence 2334455554444444444443
Q ss_pred cCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCC
Q psy17912 329 VDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGN 408 (779)
Q Consensus 329 ~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~ 408 (779)
.+.+.+.. ..+....... ...+....+|...+...+.... ..+.|+||||+|++.++.|++.|.+.|+++..+|+.
T Consensus 388 l~vv~IPt--nkp~~r~d~~-d~i~~t~~~K~~aI~~~I~~~~-~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak 463 (830)
T PRK12904 388 LDVVVIPT--NRPMIRIDHP-DLIYKTEKEKFDAVVEDIKERH-KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK 463 (830)
T ss_pred CCEEEcCC--CCCeeeeeCC-CeEEECHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc
Confidence 33332211 1111111111 1223344456666666665543 457899999999999999999999999999999995
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEecccccccccCcc-------------------------------cccccccceeEEE
Q psy17912 409 KSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVL-------------------------------NEFRIGRASILVS 457 (779)
Q Consensus 409 ~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v-------------------------------~~~~~~~~~~~VI 457 (779)
+.+|+..+..|+.+...|+|||++|+||+|++-- .+-.++. .+||
T Consensus 464 --q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GG--LhVi 539 (830)
T PRK12904 464 --NHEREAEIIAQAGRPGAVTIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGG--LHVI 539 (830)
T ss_pred --hHHHHHHHHHhcCCCceEEEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCC--CEEE
Confidence 8899999999999999999999999999997752 0111222 3778
Q ss_pred EcCCCCCHHHHHHHhccCCCCCCeE
Q psy17912 458 QYKESQQKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 458 ~y~~p~s~~~yiQR~GRaGR~g~~~ 482 (779)
-...|.|..---|-.||+||.|.+|
T Consensus 540 gTerhesrRid~QlrGRagRQGdpG 564 (830)
T PRK12904 540 GTERHESRRIDNQLRGRSGRQGDPG 564 (830)
T ss_pred ecccCchHHHHHHhhcccccCCCCC
Confidence 8888889888889999999999777
No 94
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=1.9e-25 Score=254.79 Aligned_cols=289 Identities=19% Similarity=0.179 Sum_probs=192.6
Q ss_pred EEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHH-
Q psy17912 169 VAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKA- 247 (779)
Q Consensus 169 ii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~- 247 (779)
++.||||||||.+|+..+...+.. +.++||++|+++|+.|+++.+++.. +..+..++++.+..+....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~--------g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL--------GKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 468999999999997665544432 5589999999999999999998753 5667888888766544332
Q ss_pred --hh-cCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC---chHHHH--HHHhhcCCCCceEEeeccccHH
Q psy17912 248 --LQ-TGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG---FEPQIR--KIIGQIRPDRQVLMWSATWPKE 319 (779)
Q Consensus 248 --l~-~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~---f~~~l~--~il~~l~~~~qilllSAT~~~~ 319 (779)
+. ...+|+|+|+..+. ..++++++|||||+|...-+. ...... .++.....+.+++++|||.+.+
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 22 35799999997653 247889999999999765332 111111 1223334688999999997655
Q ss_pred HHHHHHHhccCcEEEecCCCCCCCccceEEEEEecccc---chhHHHHHHHHHhccCCCCcEEEEecchhH---------
Q psy17912 320 VQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEH---EKDYKLQGLLSQIGSERTSKTIIFVETKRK--------- 387 (779)
Q Consensus 320 v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~---~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~--------- 387 (779)
....+.. .....+................+...... .-...+.+.+.+... .++++|||+|++.-
T Consensus 143 s~~~~~~--g~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~-~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 143 SYHNAKQ--KAYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLA-AGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred HHHHHhc--CCeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHH-cCCcEEEEEeCCcCCCeeEhhhC
Confidence 4333321 12222222111111111111222211111 011233344433222 46789999876532
Q ss_pred ---------------------------------------------------HHHHHHHHHhC--CCeEEEEcCCCCHHHH
Q psy17912 388 ---------------------------------------------------ADDITRSVRNK--GWAAVAIHGNKSQQER 414 (779)
Q Consensus 388 ---------------------------------------------------ae~L~~~L~~~--g~~v~~ihg~~~~~eR 414 (779)
++.+++.|.+. +.++..+|++++...+
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~ 299 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKG 299 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCcc
Confidence 58888898876 7889999999987766
Q ss_pred --HHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCC----------CHHHHHHHhccCCCCCCeE
Q psy17912 415 --DRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQ----------QKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 415 --~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~----------s~~~yiQR~GRaGR~g~~~ 482 (779)
+.+++.|++|+.+|||+|+++++|+|+|+++ .+.|+++|... ....|+|++||+||.+..|
T Consensus 300 ~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~-------lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~g 372 (505)
T TIGR00595 300 AHEALLNQFANGKADILIGTQMIAKGHHFPNVT-------LVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDPG 372 (505)
T ss_pred HHHHHHHHHhcCCCCEEEeCcccccCCCCCccc-------EEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCCC
Confidence 8999999999999999999999999999988 34456777532 2467899999999988776
Q ss_pred EEE
Q psy17912 483 SHY 485 (779)
Q Consensus 483 ~~~ 485 (779)
.++
T Consensus 373 ~vi 375 (505)
T TIGR00595 373 QVI 375 (505)
T ss_pred EEE
Confidence 555
No 95
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.94 E-value=9.3e-25 Score=253.67 Aligned_cols=149 Identities=17% Similarity=0.232 Sum_probs=129.5
Q ss_pred cCCCCCHHHHHHHH-----HcCCCCC---CHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCC
Q psy17912 131 EECNFPPYIMKKIY-----EMGFQAP---TAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGP 202 (779)
Q Consensus 131 ~~~~l~~~l~~~l~-----~~g~~~p---~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 202 (779)
+.+.+..++.+.+. ..||..| +|+|.++++.+..++++|+.++||+|||++|++|++..+... .
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g--------~ 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG--------K 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------C
Confidence 34577788877776 5789998 999999999999999999999999999999999999877642 1
Q ss_pred EEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcCCcCCC-------
Q psy17912 203 IVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQGTINLH------- 274 (779)
Q Consensus 203 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~~~~l~------- 274 (779)
.++||+||++||.|..+++..+...+++++.+++||.+...+.... +++|+|+||++| .+++..+.+.++
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr 214 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGR 214 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcc
Confidence 3899999999999999999999999999999999999887776554 589999999999 999987755555
Q ss_pred CeeEEEEccchhhhc
Q psy17912 275 RTSYLVLDEADRMLD 289 (779)
Q Consensus 275 ~i~~lViDEaH~l~~ 289 (779)
.+.++||||||.|+-
T Consensus 215 ~~~~~IIDEADsmLi 229 (970)
T PRK12899 215 GFYFAIIDEVDSILI 229 (970)
T ss_pred cccEEEEechhhhhh
Confidence 558999999998764
No 96
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.93 E-value=5.2e-25 Score=257.90 Aligned_cols=315 Identities=17% Similarity=0.144 Sum_probs=222.1
Q ss_pred HHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHH-HhcccCCceEEE
Q psy17912 156 AQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAN-DFGSATATRVAC 234 (779)
Q Consensus 156 ~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~-~~~~~~~l~v~~ 234 (779)
.+.+..+.+++.+|++||||||||+..-..++.... ..+.++.++-|.|--|..+++.+. ++....|-.|
T Consensus 56 ~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V-- 126 (845)
T COG1643 56 DEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV-- 126 (845)
T ss_pred HHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee--
Confidence 366668888999999999999999664444443322 234578999999977776665443 3333333333
Q ss_pred EeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch-hhhcCCchHHHHHH-HhhcCCCCceEEe
Q psy17912 235 VFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD-RMLDMGFEPQIRKI-IGQIRPDRQVLMW 312 (779)
Q Consensus 235 ~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH-~l~~~~f~~~l~~i-l~~l~~~~qilll 312 (779)
|+..+.+. .......|-++|.|.|+..+..+. .|+.+++||||||| +.++.+|...+.+- +...+++.++|+|
T Consensus 127 --GY~iRfe~--~~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIim 201 (845)
T COG1643 127 --GYSIRFES--KVSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIM 201 (845)
T ss_pred --eEEEEeec--cCCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence 33322222 112346899999999999996554 49999999999999 88887776655544 6666678999999
Q ss_pred eccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEE-Eeccccc-hhHHHHHHHHHhccCCCCcEEEEecchhHHHH
Q psy17912 313 SATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIV-DVCQEHE-KDYKLQGLLSQIGSERTSKTIIFVETKRKADD 390 (779)
Q Consensus 313 SAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~-~~~~~~~-k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~ 390 (779)
|||+..+ .+...|...|+...-+... .+...+ ......+ -...+...+.....+..+.+|||.+...+.+.
T Consensus 202 SATld~~--rfs~~f~~apvi~i~GR~f-----PVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~ 274 (845)
T COG1643 202 SATLDAE--RFSAYFGNAPVIEIEGRTY-----PVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER 274 (845)
T ss_pred ecccCHH--HHHHHcCCCCEEEecCCcc-----ceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH
Confidence 9999764 4554444445544333322 122222 1122222 44556666666666778999999999999999
Q ss_pred HHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcC------
Q psy17912 391 ITRSVRN----KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYK------ 460 (779)
Q Consensus 391 L~~~L~~----~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~------ 460 (779)
+++.|.+ ....+..+||.++.+++.++++.-..|+.+|++||++++++|.+|+|+ +||+-+
T Consensus 275 ~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr---------~VIDsG~ak~~~ 345 (845)
T COG1643 275 TAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIR---------YVIDSGLAKEKR 345 (845)
T ss_pred HHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeE---------EEecCCcccccc
Confidence 9999998 357899999999999999999988888888999999999999999998 777643
Q ss_pred ------------CCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhc
Q psy17912 461 ------------ESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRI 501 (779)
Q Consensus 461 ------------~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~ 501 (779)
.|-|-.+..||+|||||.+. |.+|-...++.+..+.++..
T Consensus 346 y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~p-GicyRLyse~~~~~~~~~t~ 397 (845)
T COG1643 346 YDPRTGLTRLETEPISKASADQRAGRAGRTGP-GICYRLYSEEDFLAFPEFTL 397 (845)
T ss_pred cccccCceeeeEEEechhhhhhhccccccCCC-ceEEEecCHHHHHhcccCCC
Confidence 24466788899999999964 44454444444434444433
No 97
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=1.3e-24 Score=252.14 Aligned_cols=316 Identities=15% Similarity=0.155 Sum_probs=219.1
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
..|++.|.-+.-.+..|+ |+.+.||+|||+++.+|++..... |..|-|++|+--||.|-++.+..+...+
T Consensus 79 ~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~L 148 (796)
T PRK12906 79 LRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRWL 148 (796)
T ss_pred CCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHhc
Confidence 478888888877777776 999999999999999999887776 5578999999999999999999999999
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHH-HHHHcCC------cCCCCeeEEEEccchhhhcC-C---------
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLI-DYLEQGT------INLHRTSYLVLDEADRMLDM-G--------- 291 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll-~~l~~~~------~~l~~i~~lViDEaH~l~~~-~--------- 291 (779)
|++++++.++.+..+.... ..+||+++|...|- ++|..+. ...+.+.+.||||+|.++-. .
T Consensus 149 Gl~vg~i~~~~~~~~r~~~--y~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPLiisg~ 226 (796)
T PRK12906 149 GLTVGLNLNSMSPDEKRAA--YNCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPLIISGQ 226 (796)
T ss_pred CCeEEEeCCCCCHHHHHHH--hcCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCceecCCC
Confidence 9999999887665543332 35799999987763 4443321 23456889999999976521 1
Q ss_pred ------chHHHHHHHhhcCC-------------------C----------------------------------------
Q psy17912 292 ------FEPQIRKIIGQIRP-------------------D---------------------------------------- 306 (779)
Q Consensus 292 ------f~~~l~~il~~l~~-------------------~---------------------------------------- 306 (779)
+...+..++..+.+ .
T Consensus 227 ~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~ 306 (796)
T PRK12906 227 AEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHIDQALR 306 (796)
T ss_pred CCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHHHHHHH
Confidence 11111112111110 0
Q ss_pred ---------------------------------------------------------------------CceEEeecccc
Q psy17912 307 ---------------------------------------------------------------------RQVLMWSATWP 317 (779)
Q Consensus 307 ---------------------------------------------------------------------~qilllSAT~~ 317 (779)
.++.+||.|+.
T Consensus 307 A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~GmTGTa~ 386 (796)
T PRK12906 307 ANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGMTGTAK 386 (796)
T ss_pred HHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhccCCCCH
Confidence 12233333333
Q ss_pred HHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHh
Q psy17912 318 KEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRN 397 (779)
Q Consensus 318 ~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~ 397 (779)
.+..++...|..+.+.+ +...+....... ...+.....|...+...+... ...+.|+||||+|+..++.|+..|.+
T Consensus 387 ~e~~Ef~~iY~l~vv~I--Ptnkp~~r~d~~-d~i~~t~~~K~~al~~~i~~~-~~~g~pvLI~t~si~~se~ls~~L~~ 462 (796)
T PRK12906 387 TEEEEFREIYNMEVITI--PTNRPVIRKDSP-DLLYPTLDSKFNAVVKEIKER-HAKGQPVLVGTVAIESSERLSHLLDE 462 (796)
T ss_pred HHHHHHHHHhCCCEEEc--CCCCCeeeeeCC-CeEEcCHHHHHHHHHHHHHHH-HhCCCCEEEEeCcHHHHHHHHHHHHH
Confidence 32222322222222211 111111110100 112223345666666666544 23689999999999999999999999
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccC---cccccccccceeEEEEcCCCCCHHHHHHHhcc
Q psy17912 398 KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDR---VLNEFRIGRASILVSQYKESQQKRDRVLNEFR 474 (779)
Q Consensus 398 ~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip---~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GR 474 (779)
.++++..+|+++.+.++..+.+.++.|. |+|||++|+||+|++ .|. .++. .+||+++.|.+.+.|.|+.||
T Consensus 463 ~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~--~~GG--LhVI~te~pes~ri~~Ql~GR 536 (796)
T PRK12906 463 AGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVK--ELGG--LAVIGTERHESRRIDNQLRGR 536 (796)
T ss_pred CCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchh--hhCC--cEEEeeecCCcHHHHHHHhhh
Confidence 9999999999999888888888888776 999999999999985 322 1222 289999999999999999999
Q ss_pred CCCCCCeEEEEE
Q psy17912 475 IGRASILVSHYN 486 (779)
Q Consensus 475 aGR~g~~~~~~~ 486 (779)
+||.|..|.+..
T Consensus 537 tGRqG~~G~s~~ 548 (796)
T PRK12906 537 SGRQGDPGSSRF 548 (796)
T ss_pred hccCCCCcceEE
Confidence 999998884443
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.92 E-value=1.2e-23 Score=256.92 Aligned_cols=310 Identities=15% Similarity=0.155 Sum_probs=198.1
Q ss_pred CCCCHHHHHHHHHHh----c-CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHH
Q psy17912 149 QAPTAIQAQGWPIAL----S-GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAND 223 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il----~-g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 223 (779)
..++++|.+|+..+. + .+.++++++||||||.+++..+.. +... ...+++|||+|+.+|+.|+.+.|..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~-L~~~-----~~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYR-LLKA-----KRFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHH-HHhc-----CccCeEEEEecHHHHHHHHHHHHHh
Confidence 358999999998775 2 367999999999999875544433 3332 1245899999999999999999988
Q ss_pred hcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcC-----CcCCCCeeEEEEccchhhhcC--------
Q psy17912 224 FGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQG-----TINLHRTSYLVLDEADRMLDM-------- 290 (779)
Q Consensus 224 ~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~-----~~~l~~i~~lViDEaH~l~~~-------- 290 (779)
+..........+++..... .........|+|+|++.|...+... ...+..+++||+||||+....
T Consensus 486 ~~~~~~~~~~~i~~i~~L~--~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~ 563 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLE--DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGE 563 (1123)
T ss_pred cccccccchhhhhchhhhh--hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccch
Confidence 7432221211122111000 0111234689999999998765432 135678899999999985310
Q ss_pred -------CchHHHHHHHhhcCCCCceEEeeccccHHHHHHHH--------------HhccC---cEEEecCCCC--CCCc
Q psy17912 291 -------GFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAE--------------DFLVD---YVQLNIGSLN--PTAN 344 (779)
Q Consensus 291 -------~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~--------------~~l~~---~~~i~i~~~~--~~~~ 344 (779)
.+...+..++.++ +...|+||||+......+.. .++.+ |+.+...... ....
T Consensus 564 ~~~~~~~~~~~~yr~iL~yF--dA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~ 641 (1123)
T PRK11448 564 LQFRDQLDYVSKYRRVLDYF--DAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFE 641 (1123)
T ss_pred hccchhhhHHHHHHHHHhhc--CccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccccc
Confidence 1235677788765 46789999997532221111 11110 1111110000 0000
Q ss_pred cc--eE------EEE--Eecccc--------ch-------h-HHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC
Q psy17912 345 HN--IV------QIV--DVCQEH--------EK-------D-YKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK 398 (779)
Q Consensus 345 ~~--i~------~~~--~~~~~~--------~k-------~-~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~ 398 (779)
.. +. ..+ ...++. .+ . ..+..+++.+.....+++||||.++++|+.+++.|.+.
T Consensus 642 ~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~ 721 (1123)
T PRK11448 642 KGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEA 721 (1123)
T ss_pred ccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHH
Confidence 00 00 000 000000 00 0 01112333232224579999999999999999988753
Q ss_pred ------CC---eEEEEcCCCCHHHHHHHHHHHhcCCC-cEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHH
Q psy17912 399 ------GW---AAVAIHGNKSQQERDRVLNEFRIGRA-SILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDR 468 (779)
Q Consensus 399 ------g~---~v~~ihg~~~~~eR~~il~~F~~G~~-~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~y 468 (779)
++ .+..+||+++ ++..+++.|+++.. +|+|+++++.+|+|+|.+. .|+.+.++.|...|
T Consensus 722 f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~---------~vVf~rpvkS~~lf 790 (1123)
T PRK11448 722 FKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSIC---------NLVFLRRVRSRILY 790 (1123)
T ss_pred HHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCccccc---------EEEEecCCCCHHHH
Confidence 22 4567899876 46789999999887 6999999999999999998 99999999999999
Q ss_pred HHHhccCCCCC
Q psy17912 469 VLNEFRIGRAS 479 (779)
Q Consensus 469 iQR~GRaGR~g 479 (779)
+||+||+.|..
T Consensus 791 ~QmIGRgtR~~ 801 (1123)
T PRK11448 791 EQMLGRATRLC 801 (1123)
T ss_pred HHHHhhhccCC
Confidence 99999999964
No 99
>KOG0950|consensus
Probab=99.92 E-value=3.4e-24 Score=244.59 Aligned_cols=320 Identities=19% Similarity=0.226 Sum_probs=232.5
Q ss_pred CCCHHHHHHHH-HcCCCCCCHHHHHHH--HHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccC
Q psy17912 134 NFPPYIMKKIY-EMGFQAPTAIQAQGW--PIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPT 210 (779)
Q Consensus 134 ~l~~~l~~~l~-~~g~~~p~~~Q~~~i--~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Pt 210 (779)
.+++.+.+... ..|..+++.+|.+++ +.++.++|+|..+||+.|||+++.+.++..+... ...++++.|.
T Consensus 206 ~~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~-------rr~~llilp~ 278 (1008)
T KOG0950|consen 206 RLPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCR-------RRNVLLILPY 278 (1008)
T ss_pred cCchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHH-------hhceeEecce
Confidence 35555555444 478899999999998 6788999999999999999999999888877663 2368999999
Q ss_pred HHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHc--CCcCCCCeeEEEEccchhhh
Q psy17912 211 RELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQ--GTINLHRTSYLVLDEADRML 288 (779)
Q Consensus 211 r~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~--~~~~l~~i~~lViDEaH~l~ 288 (779)
.+.+......+..+....|+.+.+.+|....... .+.-++.|||.|+-..++.+ ..-.+..+++|||||.|.+.
T Consensus 279 vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~----~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~ 354 (1008)
T KOG0950|consen 279 VSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKR----RKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIG 354 (1008)
T ss_pred eehhHHHHhhhhhhccccCCcchhhcccCCCCCc----ccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeee
Confidence 9999999999999999999999888866554332 23358999999998776644 22357789999999999999
Q ss_pred cCCchHHHHHHHhhc-----CCCCceEEeeccccHHHHHHHHHhccCcEEEe-cCCCCCCCccceE--EEEEe-------
Q psy17912 289 DMGFEPQIRKIIGQI-----RPDRQVLMWSATWPKEVQKLAEDFLVDYVQLN-IGSLNPTANHNIV--QIVDV------- 353 (779)
Q Consensus 289 ~~~f~~~l~~il~~l-----~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~-i~~~~~~~~~~i~--~~~~~------- 353 (779)
+.+....++.++..+ ....|+|+||||+|+- .++..++...+... ..+.. ..+.++ ..+.-
T Consensus 355 d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~y~t~fRPv~--L~E~ik~G~~i~~~~r~~~l 430 (1008)
T KOG0950|consen 355 DKGRGAILELLLAKILYENLETSVQIIGMSATIPNN--SLLQDWLDAFVYTTRFRPVP--LKEYIKPGSLIYESSRNKVL 430 (1008)
T ss_pred ccccchHHHHHHHHHHHhccccceeEeeeecccCCh--HHHHHHhhhhheecccCccc--chhccCCCcccccchhhHHH
Confidence 999887777776543 2346899999999864 44555554322221 11100 000000 00000
Q ss_pred ----------ccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC-------------------------
Q psy17912 354 ----------CQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK------------------------- 398 (779)
Q Consensus 354 ----------~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~------------------------- 398 (779)
....+. +.+..+..+.. ..+.++||||++++.|+.++..+...
T Consensus 431 r~ia~l~~~~~g~~dp-D~~v~L~tet~-~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~ 508 (1008)
T KOG0950|consen 431 REIANLYSSNLGDEDP-DHLVGLCTETA-PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRR 508 (1008)
T ss_pred HHhhhhhhhhcccCCC-cceeeehhhhh-hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhc
Confidence 000011 22223332221 13567999999999999998776520
Q ss_pred -------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEc----CC
Q psy17912 399 -------------GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQY----KE 461 (779)
Q Consensus 399 -------------g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y----~~ 461 (779)
.+.++++|+|++.++|+.+...|+.|.+.|++||+.++.|++.|..+ +++.. ..
T Consensus 509 ~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArR---------VIiraP~~g~~ 579 (1008)
T KOG0950|consen 509 IPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARR---------VIIRAPYVGRE 579 (1008)
T ss_pred CCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcce---------eEEeCCccccc
Confidence 13478999999999999999999999999999999999999999876 54443 23
Q ss_pred CCCHHHHHHHhccCCCCC
Q psy17912 462 SQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 462 p~s~~~yiQR~GRaGR~g 479 (779)
+.+.-+|.||+|||||+|
T Consensus 580 ~l~~~~YkQM~GRAGR~g 597 (1008)
T KOG0950|consen 580 FLTRLEYKQMVGRAGRTG 597 (1008)
T ss_pred hhhhhhHHhhhhhhhhcc
Confidence 567789999999999998
No 100
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=6.4e-24 Score=208.61 Aligned_cols=165 Identities=35% Similarity=0.561 Sum_probs=142.5
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCce
Q psy17912 152 TAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATR 231 (779)
Q Consensus 152 ~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~ 231 (779)
||+|.++++.+.+++++++.+|||+|||++|+++++..+... +..+++|++|+++|++|+.+.+..+....+++
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988763 13489999999999999999999999888889
Q ss_pred EEEEeCCCCCh-hhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcC--CCCc
Q psy17912 232 VACVFGGAPKG-PQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIR--PDRQ 308 (779)
Q Consensus 232 v~~~~gg~~~~-~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~--~~~q 308 (779)
+..++++.... .....+..+++|+|+||++|.+.+......+.++++|||||+|.+..+.+...+..++..+. ++.+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~ 154 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQ 154 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSE
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCc
Confidence 99999888754 33444455799999999999999987655777899999999999999888888888888763 3689
Q ss_pred eEEeeccccHHHHH
Q psy17912 309 VLMWSATWPKEVQK 322 (779)
Q Consensus 309 illlSAT~~~~v~~ 322 (779)
++++|||+++.+++
T Consensus 155 ~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 155 IILLSATLPSNVEK 168 (169)
T ss_dssp EEEEESSSTHHHHH
T ss_pred EEEEeeCCChhHhh
Confidence 99999999976654
No 101
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.92 E-value=1.2e-22 Score=208.37 Aligned_cols=291 Identities=16% Similarity=0.192 Sum_probs=204.0
Q ss_pred CCCHHHHHHHHHHh----cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 150 APTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 150 ~p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
+++|.|+.+-..++ +.+++++.|-||+|||. .+.+.+....++ |.++.+.+|....+..++..++.-.
T Consensus 97 ~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTE-Mif~~i~~al~~-------G~~vciASPRvDVclEl~~Rlk~aF 168 (441)
T COG4098 97 TLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTE-MIFQGIEQALNQ-------GGRVCIASPRVDVCLELYPRLKQAF 168 (441)
T ss_pred ccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchh-hhHHHHHHHHhc-------CCeEEEecCcccchHHHHHHHHHhh
Confidence 68899988776654 66899999999999995 455666666553 6689999999999999988887765
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhh-cC
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQ-IR 304 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~-l~ 304 (779)
. +..+.+++|+.+..- . .+++|+|..+|+.+-. .++++||||+|...-.. ...+...++. ..
T Consensus 169 ~--~~~I~~Lyg~S~~~f------r-~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP~~~-d~~L~~Av~~ark 231 (441)
T COG4098 169 S--NCDIDLLYGDSDSYF------R-APLVVATTHQLLRFKQ-------AFDLLIIDEVDAFPFSD-DQSLQYAVKKARK 231 (441)
T ss_pred c--cCCeeeEecCCchhc------c-ccEEEEehHHHHHHHh-------hccEEEEeccccccccC-CHHHHHHHHHhhc
Confidence 4 466778888765432 1 5899999999988754 47899999999754221 2233333333 34
Q ss_pred CCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccc------h-hHHHHHHHHHhccCCCCc
Q psy17912 305 PDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHE------K-DYKLQGLLSQIGSERTSK 377 (779)
Q Consensus 305 ~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~------k-~~~L~~ll~~i~~~~~~k 377 (779)
+...+|.+|||.|++++.-+..--...+.+...... .+..+-. +.+...-. | ..+|...++... ..+.+
T Consensus 232 ~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~--~pLpvPk-f~w~~~~~k~l~r~kl~~kl~~~lekq~-~~~~P 307 (441)
T COG4098 232 KEGATIYLTATPTKKLERKILKGNLRILKLPARFHG--KPLPVPK-FVWIGNWNKKLQRNKLPLKLKRWLEKQR-KTGRP 307 (441)
T ss_pred ccCceEEEecCChHHHHHHhhhCCeeEeecchhhcC--CCCCCCc-eEEeccHHHHhhhccCCHHHHHHHHHHH-hcCCc
Confidence 567899999999987766554433322322221111 1111111 11221111 1 125556665542 35789
Q ss_pred EEEEecchhHHHHHHHHHHhC-C-CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeE
Q psy17912 378 TIIFVETKRKADDITRSVRNK-G-WAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASIL 455 (779)
Q Consensus 378 vLVF~~s~~~ae~L~~~L~~~-g-~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~ 455 (779)
+|||+++.+..+++++.|++. . ..++..|+. ...|.+.++.|++|++++||+|.+++||+.+|.++ +.
T Consensus 308 ~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vd--------V~ 377 (441)
T COG4098 308 VLIFFPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVD--------VF 377 (441)
T ss_pred EEEEecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccce--------EE
Confidence 999999999999999999553 3 345788874 45789999999999999999999999999999998 23
Q ss_pred EEEcC-CCCCHHHHHHHhccCCCCC
Q psy17912 456 VSQYK-ESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 456 VI~y~-~p~s~~~yiQR~GRaGR~g 479 (779)
|+.-. .-.+.+.++|.+||+||.-
T Consensus 378 Vlgaeh~vfTesaLVQIaGRvGRs~ 402 (441)
T COG4098 378 VLGAEHRVFTESALVQIAGRVGRSL 402 (441)
T ss_pred EecCCcccccHHHHHHHhhhccCCC
Confidence 33322 2357889999999999963
No 102
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=1.7e-23 Score=242.97 Aligned_cols=313 Identities=17% Similarity=0.149 Sum_probs=213.7
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 229 (779)
.|+++|.-.--.+..| -|+.++||.|||++|.+|++..+.. +..|.||+|+..||.+..+++..+...+|
T Consensus 82 ~~ydVQliGgl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLLGGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHhcchHhcCC--ccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 5677777655555454 4899999999999999999987765 34599999999999999999999999999
Q ss_pred ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcC-CcC-----CCCeeEEEEccchhhhcCC-----------
Q psy17912 230 TRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQG-TIN-----LHRTSYLVLDEADRMLDMG----------- 291 (779)
Q Consensus 230 l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~-~~~-----l~~i~~lViDEaH~l~~~~----------- 291 (779)
+++.++.++.+..+ +.-...++|+++||+.| .++|..+ ... .+.+.++||||||.++...
T Consensus 152 lsv~~i~~~~~~~~--r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiDEArtPLIISg~~ 229 (908)
T PRK13107 152 LTVGINVAGLGQQE--KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILIDEARTPLIISGAA 229 (908)
T ss_pred CeEEEecCCCCHHH--HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccccCCCceeecCCC
Confidence 99999998877532 22233689999999999 8988765 223 3778999999999776422
Q ss_pred -----chHHHHHHHhhcC-------------------CCCceE-------------------------------------
Q psy17912 292 -----FEPQIRKIIGQIR-------------------PDRQVL------------------------------------- 310 (779)
Q Consensus 292 -----f~~~l~~il~~l~-------------------~~~qil------------------------------------- 310 (779)
+...+..++..+. ...+.+
T Consensus 230 ~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~dy~idek~~~v~LTe~G~~~~e~~l~~~~~~~~~~~l~~~~~~~~~~~ 309 (908)
T PRK13107 230 EDSSELYIKINTLIPNLIRQDKEDTEEYVGEGDYSIDEKAKQVHFTERGQEKVENLLIERGMLAEGDSLYSAANISLLHH 309 (908)
T ss_pred ccchHHHHHHHHHHHHHHhhhhccccccCCCCCEEEecCCCeeeechHHHHHHHHHHHhCCcccCcccccCchhhHHHHH
Confidence 0011111111110 011122
Q ss_pred -------------------------------------------------------------------------------E
Q psy17912 311 -------------------------------------------------------------------------------M 311 (779)
Q Consensus 311 -------------------------------------------------------------------------------l 311 (779)
+
T Consensus 310 i~~aL~A~~lf~~d~dYiV~dg~V~IVDe~TGRim~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kL~G 389 (908)
T PRK13107 310 VNAALRAHTLFEKDVDYIVQDNEVIIVDEHTGRTMPGRRWSEGLHQAVEAKEGVHIQNENQTLASITFQNYFRQYEKLAG 389 (908)
T ss_pred HHHHHHHHHHHhcCCceEEECCEEEEEECCCCCCCCCCccchHHHHHHHHhcCCCCCCCceeeeeehHHHHHHhhhHhhc
Confidence 2
Q ss_pred eeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHH
Q psy17912 312 WSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDI 391 (779)
Q Consensus 312 lSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L 391 (779)
||.|...+..++..-|..+.+.+.. ..+........ ..+.....|...+.+-+..+. ..+.|+||||.|.+.++.|
T Consensus 390 MTGTa~te~~Ef~~iY~l~Vv~IPT--nkp~~R~d~~d-~iy~t~~~K~~Aii~ei~~~~-~~GrpVLV~t~sv~~se~l 465 (908)
T PRK13107 390 MTGTADTEAFEFQHIYGLDTVVVPT--NRPMVRKDMAD-LVYLTADEKYQAIIKDIKDCR-ERGQPVLVGTVSIEQSELL 465 (908)
T ss_pred ccCCChHHHHHHHHHhCCCEEECCC--CCCccceeCCC-cEEeCHHHHHHHHHHHHHHHH-HcCCCEEEEeCcHHHHHHH
Confidence 2222222222222222111111111 00001001111 112233455555555555543 3689999999999999999
Q ss_pred HHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcc---------------------------
Q psy17912 392 TRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVL--------------------------- 444 (779)
Q Consensus 392 ~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v--------------------------- 444 (779)
+..|...++++..+|+.+++.++..+.+.|+.|. |+|||++|+||+|+.--
T Consensus 466 s~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (908)
T PRK13107 466 ARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQI 543 (908)
T ss_pred HHHHHHCCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998 99999999999997631
Q ss_pred ---cccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeE
Q psy17912 445 ---NEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 445 ---~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~ 482 (779)
.+-.++. .+||-...+.|..-=-|-.|||||-|.+|
T Consensus 544 ~~~~V~~~GG--L~VIgTerheSrRID~QLrGRaGRQGDPG 582 (908)
T PRK13107 544 RHDEVVAAGG--LHILGTERHESRRIDNQLRGRAGRQGDAG 582 (908)
T ss_pred hHHHHHHcCC--CEEEecccCchHHHHhhhhcccccCCCCC
Confidence 0112222 37777778888877789999999999776
No 103
>KOG0922|consensus
Probab=99.92 E-value=1.4e-23 Score=232.69 Aligned_cols=320 Identities=18% Similarity=0.174 Sum_probs=211.6
Q ss_pred HHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHH-HHhcccCCceEEE
Q psy17912 156 AQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVA-NDFGSATATRVAC 234 (779)
Q Consensus 156 ~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~-~~~~~~~~l~v~~ 234 (779)
.+++..+.+++.+|+.|+||||||+. +|-+.. ..... ...++.+..|.|.-|..+++.. .+....+|-.|+
T Consensus 57 ~~il~~ve~nqvlIviGeTGsGKSTQ--ipQyL~--eaG~~---~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG- 128 (674)
T KOG0922|consen 57 DQILYAVEDNQVLIVIGETGSGKSTQ--IPQYLA--EAGFA---SSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG- 128 (674)
T ss_pred HHHHHHHHHCCEEEEEcCCCCCcccc--HhHHHH--hcccc---cCCcEEeecCchHHHHHHHHHHHHHhCCCcCceee-
Confidence 37777888999999999999999955 443322 11111 1224899999998888766533 344333343333
Q ss_pred EeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch-hhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 235 VFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD-RMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 235 ~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH-~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
..-+.++.. .....|.++|.|.|++.+..+. .|+++++||+|||| +-+..+....+.+-+..-+++.+++++|
T Consensus 129 ---Y~IRFed~t--s~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimS 202 (674)
T KOG0922|consen 129 ---YTIRFEDST--SKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMS 202 (674)
T ss_pred ---eEEEecccC--CCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 222222211 1236899999999999886544 59999999999999 5554443333333334446789999999
Q ss_pred ccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccc-cchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHH
Q psy17912 314 ATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQE-HEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDIT 392 (779)
Q Consensus 314 AT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~ 392 (779)
||+..+ .+..-|...++....+... .+...+...+. ..-...+..+++-...++.+-+|||....++++.++
T Consensus 203 ATlda~--kfS~yF~~a~i~~i~GR~f-----PVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~ 275 (674)
T KOG0922|consen 203 ATLDAE--KFSEYFNNAPILTIPGRTF-----PVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAAC 275 (674)
T ss_pred eeecHH--HHHHHhcCCceEeecCCCC-----ceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHH
Confidence 999753 4444444445555444433 12222222222 222334444455445677889999999999999999
Q ss_pred HHHHhC------CC--eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCC---
Q psy17912 393 RSVRNK------GW--AAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKE--- 461 (779)
Q Consensus 393 ~~L~~~------g~--~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~--- 461 (779)
+.|.+. +. -+.++||.++.+++.++++.-..|..+|++||++++..|.++++. |.+.....-+..|++
T Consensus 276 ~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~-YVVDsG~vK~~~y~p~~g 354 (674)
T KOG0922|consen 276 ELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIR-YVVDSGFVKQKKYNPRTG 354 (674)
T ss_pred HHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceE-EEEcCCceEEEeeccccC
Confidence 999864 11 357899999999999999999999999999999999999999988 222111112222333
Q ss_pred -------CCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHh
Q psy17912 462 -------SQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 498 (779)
Q Consensus 462 -------p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e 498 (779)
|-|..+-.||+|||||.|. |.+|-...++.+.-+..
T Consensus 355 ~~~L~v~~ISkasA~QRaGRAGRt~p-GkcyRLYte~~~~~~~~ 397 (674)
T KOG0922|consen 355 LDSLIVVPISKASANQRAGRAGRTGP-GKCYRLYTESAYDKMPL 397 (674)
T ss_pred ccceeEEechHHHHhhhcccCCCCCC-ceEEEeeeHHHHhhccc
Confidence 4577888999999999974 45555555555544333
No 104
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.91 E-value=1.6e-22 Score=242.77 Aligned_cols=378 Identities=17% Similarity=0.223 Sum_probs=240.7
Q ss_pred CCCHHHHHHHHHHh----cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 150 APTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 150 ~p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
.++|||.+++.++. ++.+.|+...+|.|||+..+..+. ++.... +....+|||||. ++..+|.+++.+++
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~-~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLG-YLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHH-HHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 67899999999886 678899999999999987654433 332211 112247999997 56677999999987
Q ss_pred ccCCceEEEEeCCCCChhhHHH---hhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhh
Q psy17912 226 SATATRVACVFGGAPKGPQVKA---LQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQ 302 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~---l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~ 302 (779)
. .+++..++|.......... .....+|+|+|++.+..... .+.--.+++|||||||++... .....+.+..
T Consensus 243 p--~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~--~Sklskalr~ 316 (1033)
T PLN03142 243 P--VLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE--NSLLSKTMRL 316 (1033)
T ss_pred C--CCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH--HHHHHHHHHH
Confidence 4 4566677775443222111 12357999999998876432 222335789999999998764 3345555555
Q ss_pred cCCCCceEEeecccc----HHHHHHHHHhccC--------------------------------cEEEecCC--CCCCCc
Q psy17912 303 IRPDRQVLMWSATWP----KEVQKLAEDFLVD--------------------------------YVQLNIGS--LNPTAN 344 (779)
Q Consensus 303 l~~~~qilllSAT~~----~~v~~l~~~~l~~--------------------------------~~~i~i~~--~~~~~~ 344 (779)
+. ....+++|+|+- .++..++.-..++ |+.+.... .....+
T Consensus 317 L~-a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~~~LP 395 (1033)
T PLN03142 317 FS-TNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLP 395 (1033)
T ss_pred hh-cCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHhhhCC
Confidence 54 345688999941 1111111100000 00000000 000000
Q ss_pred cceEEEEE--------------------------------------------------------------eccccchhHH
Q psy17912 345 HNIVQIVD--------------------------------------------------------------VCQEHEKDYK 362 (779)
Q Consensus 345 ~~i~~~~~--------------------------------------------------------------~~~~~~k~~~ 362 (779)
......+. .+....|...
T Consensus 396 pK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~l 475 (1033)
T PLN03142 396 PKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVL 475 (1033)
T ss_pred CceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHH
Confidence 00000000 0011234445
Q ss_pred HHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC---CCcEEEEeccccccc
Q psy17912 363 LQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIG---RASILVSQYNKSQQE 439 (779)
Q Consensus 363 L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G---~~~ILVAT~v~~~GI 439 (779)
|..++..+. ..+.+||||++.....+.|.++|...++..+.+||+++..+|..+++.|... ...+|++|.+++.||
T Consensus 476 LdkLL~~Lk-~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGI 554 (1033)
T PLN03142 476 LDKLLPKLK-ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGI 554 (1033)
T ss_pred HHHHHHHHH-hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCC
Confidence 555665553 3578999999999999999999999999999999999999999999999753 346899999999999
Q ss_pred ccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCe--EEEEEc----ChHHH--HHHHHhhhccccceeeccc
Q psy17912 440 RDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASIL--VSHYNK----SQQER--DRVLNEFRIGRASILVSHY 511 (779)
Q Consensus 440 Dip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~--~~~~~~----~~~e~--~~~l~e~~~~~~~il~~~~ 511 (779)
|+..++ .||+||+++++....|++||+-|-|.. +.+|.+ +-+++ .....+..+....+-.+..
T Consensus 555 NLt~Ad---------~VIiyD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gTIEEkIlera~~Kl~Ld~~Vi~~g~~ 625 (1033)
T PLN03142 555 NLATAD---------IVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRL 625 (1033)
T ss_pred chhhCC---------EEEEeCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999988 999999999999999999999999933 333332 22232 1122333333322222211
Q ss_pred c-ccHHHHHHhhhhhcccccchhhhcc-cccHHHHHHHHHH
Q psy17912 512 N-KSQQERDRVLNEFRIGRASILVSHY-NKSQQERDRVLNE 550 (779)
Q Consensus 512 ~-~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ 550 (779)
. .....++.++..++.|...++.+.. ..+++++|.+|+.
T Consensus 626 ~~~~~~~~~eL~~ll~~ga~~~f~~~~~~~~~~did~il~~ 666 (1033)
T PLN03142 626 AEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAK 666 (1033)
T ss_pred cccccCCHHHHHHHHHhChHHhhhccCCCCCHHHHHHHHHh
Confidence 1 1233466777777888887775432 3467788888764
No 105
>KOG0920|consensus
Probab=99.90 E-value=3.4e-22 Score=233.21 Aligned_cols=335 Identities=15% Similarity=0.159 Sum_probs=233.1
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHH-HHhcccCCc
Q psy17912 152 TAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVA-NDFGSATAT 230 (779)
Q Consensus 152 ~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~-~~~~~~~~l 230 (779)
...+.+++..+.+.+.++++|.||||||......++....... ...++++..|.|--|..+++.+ .+.+...+-
T Consensus 175 ~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 175 YKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 5678889999999999999999999999887777777766543 3557999999999988887755 344444454
Q ss_pred eEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch-hhhcCCchHHHHHHHhhcCCCCce
Q psy17912 231 RVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD-RMLDMGFEPQIRKIIGQIRPDRQV 309 (779)
Q Consensus 231 ~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH-~l~~~~f~~~l~~il~~l~~~~qi 309 (779)
.|+.-.+..+.. .....+++||.|.|++.+.. ...+..+++||+||+| +-.+.+|...+.+.+...+|+.++
T Consensus 250 ~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 250 EVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred eeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 444333322221 12268999999999999966 5568999999999999 777888888888888888899999
Q ss_pred EEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccce---------------EEE------------EEeccccchhHH
Q psy17912 310 LMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNI---------------VQI------------VDVCQEHEKDYK 362 (779)
Q Consensus 310 lllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i---------------~~~------------~~~~~~~~k~~~ 362 (779)
|+||||+..+ ....|+.....+.+......+...+ ... ............
T Consensus 323 ILMSAT~dae---~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~L 399 (924)
T KOG0920|consen 323 ILMSATLDAE---LFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDL 399 (924)
T ss_pred EEeeeecchH---HHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHH
Confidence 9999998743 3334443332232222111111000 000 001111133455
Q ss_pred HHHHHHHhccC-CCCcEEEEecchhHHHHHHHHHHhC-------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy17912 363 LQGLLSQIGSE-RTSKTIIFVETKRKADDITRSVRNK-------GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYN 434 (779)
Q Consensus 363 L~~ll~~i~~~-~~~kvLVF~~s~~~ae~L~~~L~~~-------g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v 434 (779)
+.+++..+... ..+.+|||.++..++..+.+.|... .+-+.++|+.|+..++..+++....|..+|++||++
T Consensus 400 i~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNI 479 (924)
T KOG0920|consen 400 IEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNI 479 (924)
T ss_pred HHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhh
Confidence 66666666544 4789999999999999999999752 366889999999999999999999999999999999
Q ss_pred cccccccCcccccccccceeEEEEcCCCCCHH----------HHHHHhccCCCCCCeEEEEEcChHHHHHHHHh-hhccc
Q psy17912 435 KSQQERDRVLNEFRIGRASILVSQYKESQQKR----------DRVLNEFRIGRASILVSHYNKSQQERDRVLNE-FRIGR 503 (779)
Q Consensus 435 ~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~----------~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e-~~~~~ 503 (779)
|+.+|.+++|- |.+.....-...||+-.+.. .-.||.|||||.- .|.+|.....-++..+.. |.++.
T Consensus 480 AETSITIdDVv-yVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~-~G~cy~L~~~~~~~~~~~~~q~PE 557 (924)
T KOG0920|consen 480 AETSITIDDVV-YVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVR-PGICYHLYTRSRYEKLMLAYQLPE 557 (924)
T ss_pred HhhcccccCeE-EEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCcc-CCeeEEeechhhhhhcccccCChH
Confidence 99999999875 11111111222355544433 3469999999984 455666555555554433 54443
No 106
>KOG0923|consensus
Probab=99.90 E-value=1.5e-22 Score=221.87 Aligned_cols=305 Identities=16% Similarity=0.160 Sum_probs=215.9
Q ss_pred CCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHH-HHHhcccCC
Q psy17912 151 PTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETV-ANDFGSATA 229 (779)
Q Consensus 151 p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~-~~~~~~~~~ 229 (779)
.+++-.+.+.++..++.+||.|.||||||. ++|-+.+-... ...+.++-+..|.|..|..++.. .+++ +
T Consensus 266 Vy~ykdell~av~e~QVLiI~GeTGSGKTT--QiPQyL~EaGy----tk~gk~IgcTQPRRVAAmSVAaRVA~EM----g 335 (902)
T KOG0923|consen 266 VYPYKDELLKAVKEHQVLIIVGETGSGKTT--QIPQYLYEAGY----TKGGKKIGCTQPRRVAAMSVAARVAEEM----G 335 (902)
T ss_pred chhhHHHHHHHHHhCcEEEEEcCCCCCccc--cccHHHHhccc----ccCCceEeecCcchHHHHHHHHHHHHHh----C
Confidence 467788899999999999999999999995 46655432221 12344588999999998877653 3444 3
Q ss_pred ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch-hhhcCCchHHHHHHHhhcCCCCc
Q psy17912 230 TRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD-RMLDMGFEPQIRKIIGQIRPDRQ 308 (779)
Q Consensus 230 l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH-~l~~~~f~~~l~~il~~l~~~~q 308 (779)
.+.+.-+|..-+.++... ...-|-++|.|+|+.-+. ....|.++++||||||| +-+..+..-.+.+-+..++|+.+
T Consensus 336 vkLG~eVGYsIRFEdcTS--ekTvlKYMTDGmLlREfL-~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLK 412 (902)
T KOG0923|consen 336 VKLGHEVGYSIRFEDCTS--EKTVLKYMTDGMLLREFL-SEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLK 412 (902)
T ss_pred cccccccceEEEeccccC--cceeeeeecchhHHHHHh-ccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcce
Confidence 333333333333222211 235688999999998774 45579999999999999 66665555556666677789999
Q ss_pred eEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccc-hhHHHHHHHHHhccCCCCcEEEEecchhH
Q psy17912 309 VLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHE-KDYKLQGLLSQIGSERTSKTIIFVETKRK 387 (779)
Q Consensus 309 illlSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~-k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ 387 (779)
+++.|||+..+ ++..-|-..|++...+...+ +.-.+...++.+ -...+..++.-....+.+-+|||....++
T Consensus 413 llIsSAT~DAe--kFS~fFDdapIF~iPGRRyP-----Vdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 413 LLISSATMDAE--KFSAFFDDAPIFRIPGRRYP-----VDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEE 485 (902)
T ss_pred EEeeccccCHH--HHHHhccCCcEEeccCcccc-----eeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHH
Confidence 99999999764 45444444566665544432 222222233322 22333444444445577899999999999
Q ss_pred HHHHHHHHHhC---------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEE
Q psy17912 388 ADDITRSVRNK---------GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQ 458 (779)
Q Consensus 388 ae~L~~~L~~~---------g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~ 458 (779)
.+...+.|... .+-++++|++++.+.+..|++.-..|..+|++||++|+..|.+++|. +||+
T Consensus 486 IEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~---------yViD 556 (902)
T KOG0923|consen 486 IETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIK---------YVID 556 (902)
T ss_pred HHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeE---------EEec
Confidence 98888888642 34588999999999999999999999999999999999999999988 7776
Q ss_pred cCC------------------CCCHHHHHHHhccCCCCCCeEEE
Q psy17912 459 YKE------------------SQQKRDRVLNEFRIGRASILVSH 484 (779)
Q Consensus 459 y~~------------------p~s~~~yiQR~GRaGR~g~~~~~ 484 (779)
.+. |-+-.+-.||+|||||+|-..+|
T Consensus 557 pGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCf 600 (902)
T KOG0923|consen 557 PGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCF 600 (902)
T ss_pred CccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceE
Confidence 442 44566778999999999844433
No 107
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.89 E-value=9.6e-22 Score=234.34 Aligned_cols=319 Identities=16% Similarity=0.162 Sum_probs=211.2
Q ss_pred CCHHHHHHHHHHhcC---C-CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc
Q psy17912 151 PTAIQAQGWPIALSG---C-DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 151 p~~~Q~~~i~~il~g---~-dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 226 (779)
.++.|..++..+... . .+++.||||+|||.+.+.+++..+... ....++++++.|++++++++++.++....
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 488999999888743 4 788999999999999999998777663 12467999999999999999999988765
Q ss_pred cCCceEEEEeCCCCChhhHHH-----h---------hcCCeEEEeChHHHHHHHHcCC-cC-CC--CeeEEEEccchhhh
Q psy17912 227 ATATRVACVFGGAPKGPQVKA-----L---------QTGAEIVIATPGRLIDYLEQGT-IN-LH--RTSYLVLDEADRML 288 (779)
Q Consensus 227 ~~~l~v~~~~gg~~~~~~~~~-----l---------~~~~~IiV~Tpe~Ll~~l~~~~-~~-l~--~i~~lViDEaH~l~ 288 (779)
.........++.......... . .....++++||-.+........ .. +. ..+++|+||+|.+.
T Consensus 272 ~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~ 351 (733)
T COG1203 272 LFSVIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYA 351 (733)
T ss_pred ccccccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhc
Confidence 444332212332221111000 0 0114566666655554221111 11 11 23789999999888
Q ss_pred cCCchHHHHHHHhhc-CCCCceEEeeccccHHHHHHHHHhccCcEEEecCCC-CCCCcc-ceEEEEEeccccchh-HHHH
Q psy17912 289 DMGFEPQIRKIIGQI-RPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSL-NPTANH-NIVQIVDVCQEHEKD-YKLQ 364 (779)
Q Consensus 289 ~~~f~~~l~~il~~l-~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~-~~~~~~-~i~~~~~~~~~~~k~-~~L~ 364 (779)
+......+..++..+ .-+..+|+||||+|+.+++.+...+.+...+..... .+.... .+.+... ....+.. ..+.
T Consensus 352 ~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~ 430 (733)
T COG1203 352 DETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKER-VDVEDGPQEELI 430 (733)
T ss_pred ccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccc-hhhhhhhhHhhh
Confidence 763233333333333 347899999999999999988887765443333211 000000 1111100 0000000 0111
Q ss_pred HHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEecccccccc
Q psy17912 365 GLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFR----IGRASILVSQYNKSQQER 440 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~----~G~~~ILVAT~v~~~GID 440 (779)
...... ...+.+++|.|||...|.++++.|+..+.++..+||.+...+|.+.++.++ .+...|+|||++++.|+|
T Consensus 431 ~~~~~~-~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvD 509 (733)
T COG1203 431 ELISEE-VKEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVD 509 (733)
T ss_pred hcchhh-hccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEec
Confidence 111111 235789999999999999999999998878999999999999999988654 468899999999999999
Q ss_pred cCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC--CeEEEEEc
Q psy17912 441 DRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS--ILVSHYNK 487 (779)
Q Consensus 441 ip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g--~~~~~~~~ 487 (779)
+. +-+.+..+..+.+++||+||++|.| ..+..+..
T Consensus 510 id------------fd~mITe~aPidSLIQR~GRv~R~g~~~~~~~~v~ 546 (733)
T COG1203 510 ID------------FDVLITELAPIDSLIQRAGRVNRHGKKENGKIYVY 546 (733)
T ss_pred cc------------cCeeeecCCCHHHHHHHHHHHhhcccccCCceeEe
Confidence 65 3356677889999999999999999 44444443
No 108
>KOG0924|consensus
Probab=99.87 E-value=2.5e-21 Score=212.27 Aligned_cols=306 Identities=16% Similarity=0.130 Sum_probs=205.7
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCce
Q psy17912 152 TAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATR 231 (779)
Q Consensus 152 ~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~ 231 (779)
...+.+.+..+..++.+|++++||||||.. +|-+.+... -..+..+-+..|.|..|..++....+ +++..
T Consensus 358 f~~R~~ll~~ir~n~vvvivgETGSGKTTQ--l~QyL~edG-----Y~~~GmIGcTQPRRvAAiSVAkrVa~---EM~~~ 427 (1042)
T KOG0924|consen 358 FACRDQLLSVIRENQVVVIVGETGSGKTTQ--LAQYLYEDG-----YADNGMIGCTQPRRVAAISVAKRVAE---EMGVT 427 (1042)
T ss_pred HHHHHHHHHHHhhCcEEEEEecCCCCchhh--hHHHHHhcc-----cccCCeeeecCchHHHHHHHHHHHHH---HhCCc
Confidence 445666777777889999999999999965 333322211 11234778889999998876654432 23333
Q ss_pred EEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch-hhhcCCchHHHHHHHhhcCCCCceE
Q psy17912 232 VACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD-RMLDMGFEPQIRKIIGQIRPDRQVL 310 (779)
Q Consensus 232 v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH-~l~~~~f~~~l~~il~~l~~~~qil 310 (779)
.+.-+|..-+.++... ....|-++|.|.|+.-.... -.|.+++.||+|||| +.++.+...-+.+.+..-+.+.++|
T Consensus 428 lG~~VGYsIRFEdvT~--~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKli 504 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTS--EDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLI 504 (1042)
T ss_pred cccccceEEEeeecCC--CceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEE
Confidence 3333444333332221 23579999999998765433 358899999999999 6666554444555555556799999
Q ss_pred EeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHh----ccCCCCcEEEEecchh
Q psy17912 311 MWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQI----GSERTSKTIIFVETKR 386 (779)
Q Consensus 311 llSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i----~~~~~~kvLVF~~s~~ 386 (779)
.+|||+.. +++..-|...|.+...+...+ + .-.+ ....-.+++...+++. .....+-+|||....+
T Consensus 505 VtSATm~a--~kf~nfFgn~p~f~IpGRTyP-V----~~~~---~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqe 574 (1042)
T KOG0924|consen 505 VTSATMDA--QKFSNFFGNCPQFTIPGRTYP-V----EIMY---TKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQE 574 (1042)
T ss_pred EeeccccH--HHHHHHhCCCceeeecCCccc-e----EEEe---ccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCc
Confidence 99999975 355554544555544443321 1 1111 1112233444444433 2335688999999888
Q ss_pred HHHHHHHHHHh----------CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEE
Q psy17912 387 KADDITRSVRN----------KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILV 456 (779)
Q Consensus 387 ~ae~L~~~L~~----------~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~V 456 (779)
.++..+..++. .++.+..|++.++.+-+.+++..-..|..+++|||++|+..|.+|++. +|
T Consensus 575 diE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~---------yV 645 (1042)
T KOG0924|consen 575 DIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIR---------YV 645 (1042)
T ss_pred chhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceE---------EE
Confidence 77766665543 157899999999999999999988899999999999999999999988 77
Q ss_pred EEcC------------------CCCCHHHHHHHhccCCCCCCeEEEEEcChH
Q psy17912 457 SQYK------------------ESQQKRDRVLNEFRIGRASILVSHYNKSQQ 490 (779)
Q Consensus 457 I~y~------------------~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~ 490 (779)
|+.+ .|-+-..--||+|||||+| .|++|-+.++
T Consensus 646 ID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~-pG~cYRlYTe 696 (1042)
T KOG0924|consen 646 IDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTG-PGTCYRLYTE 696 (1042)
T ss_pred EecCceeeeecccccccceeEEEechhccchhhccccCCCC-Ccceeeehhh
Confidence 6643 2456666789999999997 3455554443
No 109
>KOG0385|consensus
Probab=99.87 E-value=5.9e-21 Score=212.58 Aligned_cols=383 Identities=20% Similarity=0.278 Sum_probs=257.7
Q ss_pred CCCHHHHHHHHHHh----cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 150 APTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 150 ~p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
.+++||.+.++++. +|-+.|+..+.|.|||+..+. ++.++.... ...||. ||++|...|.+ |..++++|+
T Consensus 167 ~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs-~l~yl~~~~---~~~GPf-LVi~P~StL~N-W~~Ef~rf~ 240 (971)
T KOG0385|consen 167 ELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTIS-LLGYLKGRK---GIPGPF-LVIAPKSTLDN-WMNEFKRFT 240 (971)
T ss_pred ccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHH-HHHHHHHhc---CCCCCe-EEEeeHhhHHH-HHHHHHHhC
Confidence 67999999999876 678999999999999977543 333333311 224665 99999988876 677788887
Q ss_pred ccCCceEEEEeCCCCChhhHH-Hh--hcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhh
Q psy17912 226 SATATRVACVFGGAPKGPQVK-AL--QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQ 302 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~-~l--~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~ 302 (779)
. ++++++++|+...+.... .+ ....+|+|+|+++.+.- ...+.--.+.|+||||||++... ...+.++++.
T Consensus 241 P--~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~--~s~L~~~lr~ 314 (971)
T KOG0385|consen 241 P--SLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE--KSKLSKILRE 314 (971)
T ss_pred C--CcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch--hhHHHHHHHH
Confidence 6 678888999875433221 11 23589999999988754 22233345799999999999876 4456677777
Q ss_pred cCCCCceEEeeccc-cHHH---HHHHH-------------------------------------Hhc------------c
Q psy17912 303 IRPDRQVLMWSATW-PKEV---QKLAE-------------------------------------DFL------------V 329 (779)
Q Consensus 303 l~~~~qilllSAT~-~~~v---~~l~~-------------------------------------~~l------------~ 329 (779)
+..+. .+++|.|+ -+.+ ..++. -|+ .
T Consensus 315 f~~~n-rLLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe~sLp 393 (971)
T KOG0385|consen 315 FKTDN-RLLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVEKSLP 393 (971)
T ss_pred hcccc-eeEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHhhcCC
Confidence 75444 55667772 1100 00000 000 0
Q ss_pred C--cEEEecCCCC------------------C------CCccce-----------------------EEEEEeccccchh
Q psy17912 330 D--YVQLNIGSLN------------------P------TANHNI-----------------------VQIVDVCQEHEKD 360 (779)
Q Consensus 330 ~--~~~i~i~~~~------------------~------~~~~~i-----------------------~~~~~~~~~~~k~ 360 (779)
. .+.+.++-.. . ....++ ...-..+....|.
T Consensus 394 pKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm 473 (971)
T KOG0385|consen 394 PKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKM 473 (971)
T ss_pred CcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcce
Confidence 0 0000000000 0 000000 0000011234566
Q ss_pred HHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC---CCcEEEEeccccc
Q psy17912 361 YKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIG---RASILVSQYNKSQ 437 (779)
Q Consensus 361 ~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G---~~~ILVAT~v~~~ 437 (779)
..|..||..+. ..+++||||.+.....+.|.+++.-.++..+.+.|.++.++|...++.|... +.-+|++|.+.+.
T Consensus 474 ~vLDkLL~~Lk-~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGL 552 (971)
T KOG0385|consen 474 LVLDKLLPKLK-EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGL 552 (971)
T ss_pred ehHHHHHHHHH-hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccc
Confidence 77778887774 4589999999999999999999999999999999999999999999999753 4568999999999
Q ss_pred ccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC--CeEEEEEc----ChHHH--HHHHHhhhccccceeec
Q psy17912 438 QERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS--ILVSHYNK----SQQER--DRVLNEFRIGRASILVS 509 (779)
Q Consensus 438 GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g--~~~~~~~~----~~~e~--~~~l~e~~~~~~~il~~ 509 (779)
|||+...+ .||.||..+++..-.|..-||-|-| ..+.+|.. +.+|+ .+...++++..+.|...
T Consensus 553 GINL~aAD---------tVIlyDSDWNPQ~DLQAmDRaHRIGQ~K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385|consen 553 GINLTAAD---------TVILYDSDWNPQVDLQAMDRAHRIGQKKPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred cccccccc---------EEEEecCCCCchhhhHHHHHHHhhCCcCceEEEEEeccchHHHHHHHHHHHHhchhhhhhccC
Confidence 99998888 9999999999988888777777777 33344432 22333 45667777777766666
Q ss_pred cc---cccHHHHHHhhhhhcccccchhhhcccccHHHHHHHHHHhhhcc
Q psy17912 510 HY---NKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGR 555 (779)
Q Consensus 510 ~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 555 (779)
.. .+....++.+++..+.|...++.+.-.....++|++|..=..+.
T Consensus 624 ~l~~~~~~~~~k~~~l~~~r~g~~~~f~~~es~~~dDid~il~~~e~kt 672 (971)
T KOG0385|consen 624 RLEEQKSNGLGKDELLNLLRFGADPVFESKESTISDDIDRILERGEEKT 672 (971)
T ss_pred chhhhhccccchHHHHHHHHcCchhhhhhcccccchhHHHHHHhhhhhc
Confidence 22 22335678888888888887666664433339999988766443
No 110
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.83 E-value=3.2e-19 Score=208.26 Aligned_cols=125 Identities=10% Similarity=0.110 Sum_probs=105.0
Q ss_pred ccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q psy17912 356 EHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK 435 (779)
Q Consensus 356 ~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~ 435 (779)
...|...+...+.... ..+.|+||||+|+..++.|+..|.+.++++..+|+ .+.+|+..+..|+.+...|+|||++|
T Consensus 580 ~~eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMA 656 (1025)
T PRK12900 580 RREKYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMA 656 (1025)
T ss_pred HHHHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCc
Confidence 3456666666665543 35789999999999999999999999999999997 68899999999999999999999999
Q ss_pred ccccccC---cccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEc
Q psy17912 436 SQQERDR---VLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNK 487 (779)
Q Consensus 436 ~~GIDip---~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~ 487 (779)
+||+|++ .|. ..+. .+||.+..|.+...|.|++||+||.|..|.+.+.
T Consensus 657 GRGtDIkl~~~V~--~vGG--L~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ff 707 (1025)
T PRK12900 657 GRGTDIKLGEGVR--ELGG--LFILGSERHESRRIDRQLRGRAGRQGDPGESVFY 707 (1025)
T ss_pred CCCCCcCCccchh--hhCC--ceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEE
Confidence 9999998 332 1111 2679999999999999999999999988855543
No 111
>KOG0926|consensus
Probab=99.83 E-value=1.1e-19 Score=202.51 Aligned_cols=299 Identities=15% Similarity=0.169 Sum_probs=189.6
Q ss_pred HHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHH-HHhcccCCceEE
Q psy17912 155 QAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVA-NDFGSATATRVA 233 (779)
Q Consensus 155 Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~-~~~~~~~~l~v~ 233 (779)
.++++.+|..+-.+||||.||||||.. +|-+.+-..........+..+-|.-|.|.-|..+++.. .+++. ++-.|+
T Consensus 261 Eq~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVs 337 (1172)
T KOG0926|consen 261 EQRIMEAINENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVS 337 (1172)
T ss_pred HHHHHHHhhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-Ccccee
Confidence 456777888888999999999999965 44443322221111222447889999999888776543 33433 343443
Q ss_pred EEe--CCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch-hhhcCCch-HHHHHHH---hhcC--
Q psy17912 234 CVF--GGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD-RMLDMGFE-PQIRKII---GQIR-- 304 (779)
Q Consensus 234 ~~~--gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH-~l~~~~f~-~~l~~il---~~l~-- 304 (779)
... .++- .....|.++|.|.|+.-+.. .+.|.+++.||+|||| +....+.. -.+.+|+ ..+.
T Consensus 338 YqIRfd~ti--------~e~T~IkFMTDGVLLrEi~~-DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ke 408 (1172)
T KOG0926|consen 338 YQIRFDGTI--------GEDTSIKFMTDGVLLREIEN-DFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYYKE 408 (1172)
T ss_pred EEEEecccc--------CCCceeEEecchHHHHHHHH-hHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHhhh
Confidence 322 2221 22368999999999998854 5669999999999999 44433211 1122221 1121
Q ss_pred ----CCCceEEeeccccHHHHHHHH--Hhcc-CcEEEecCCCCCCCccceEEEEEe-ccccchhHHHHHHHHHhccCCCC
Q psy17912 305 ----PDRQVLMWSATWPKEVQKLAE--DFLV-DYVQLNIGSLNPTANHNIVQIVDV-CQEHEKDYKLQGLLSQIGSERTS 376 (779)
Q Consensus 305 ----~~~qilllSAT~~~~v~~l~~--~~l~-~~~~i~i~~~~~~~~~~i~~~~~~-~~~~~k~~~L~~ll~~i~~~~~~ 376 (779)
...++|+||||+--. ++.. .++. -|..+.+......+ .-.+.. .+...-...+...+.-...-+.+
T Consensus 409 ~~~~kpLKLIIMSATLRVs--DFtenk~LFpi~pPlikVdARQfPV----sIHF~krT~~DYi~eAfrKtc~IH~kLP~G 482 (1172)
T KOG0926|consen 409 QCQIKPLKLIIMSATLRVS--DFTENKRLFPIPPPLIKVDARQFPV----SIHFNKRTPDDYIAEAFRKTCKIHKKLPPG 482 (1172)
T ss_pred hcccCceeEEEEeeeEEec--ccccCceecCCCCceeeeecccCce----EEEeccCCCchHHHHHHHHHHHHhhcCCCC
Confidence 256899999998432 3321 1111 12222222222111 111111 11112222333333333344789
Q ss_pred cEEEEecchhHHHHHHHHHHhC----------------------------------------------------------
Q psy17912 377 KTIIFVETKRKADDITRSVRNK---------------------------------------------------------- 398 (779)
Q Consensus 377 kvLVF~~s~~~ae~L~~~L~~~---------------------------------------------------------- 398 (779)
.+|||+....+++.|++.|++.
T Consensus 483 ~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~ 562 (1172)
T KOG0926|consen 483 GILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFA 562 (1172)
T ss_pred cEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccch
Confidence 9999999999999999999721
Q ss_pred -----------------------------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q psy17912 399 -----------------------------------------GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQ 437 (779)
Q Consensus 399 -----------------------------------------g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~ 437 (779)
..-|..+++-++.+.+.++++.-..|..-++|||++|++
T Consensus 563 ~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAET 642 (1172)
T KOG0926|consen 563 SLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAET 642 (1172)
T ss_pred hhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhc
Confidence 011677888899999999999999999999999999999
Q ss_pred ccccCcccccccccceeEEEE--------cCCCCCHHHH----------HHHhccCCCCCC
Q psy17912 438 QERDRVLNEFRIGRASILVSQ--------YKESQQKRDR----------VLNEFRIGRASI 480 (779)
Q Consensus 438 GIDip~v~~~~~~~~~~~VI~--------y~~p~s~~~y----------iQR~GRaGR~g~ 480 (779)
.|.+|+|. +||+ ||.-..+..| -||+|||||.|.
T Consensus 643 SLTIPgIk---------YVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp 694 (1172)
T KOG0926|consen 643 SLTIPGIK---------YVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP 694 (1172)
T ss_pred ccccCCee---------EEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCC
Confidence 99999998 7776 5555544444 499999999974
No 112
>KOG0331|consensus
Probab=99.82 E-value=4.9e-20 Score=203.99 Aligned_cols=220 Identities=17% Similarity=0.204 Sum_probs=152.8
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIG 450 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~ 450 (779)
...+||.+||++.|.++.+.+.+. ++.+.+++||.+...+.+-++ ..+.|+|||+ ++-+|+-.....++.
T Consensus 165 ~P~vLVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~----~gvdiviaTP--GRl~d~le~g~~~l~ 238 (519)
T KOG0331|consen 165 GPIVLVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLE----RGVDVVIATP--GRLIDLLEEGSLNLS 238 (519)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHh----cCCcEEEeCC--hHHHHHHHcCCcccc
Confidence 556999999999999999999864 456899999999988887776 4689999999 788876666666677
Q ss_pred cceeEEEE-------cCCCCCHHHHHHHhccCCCCCCeEEEEEc-ChHHHHHHHHhhhccccceeeccccccHHHHHHhh
Q psy17912 451 RASILVSQ-------YKESQQKRDRVLNEFRIGRASILVSHYNK-SQQERDRVLNEFRIGRASILVSHYNKSQQERDRVL 522 (779)
Q Consensus 451 ~~~~~VI~-------y~~p~s~~~yiQR~GRaGR~g~~~~~~~~-~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l 522 (779)
+..++|++ -+.-.++...+.+++|.-| ....+.. -+.+-..+..+|..+...+.+...+ +......+.
T Consensus 239 ~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r---Qtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~-~~~a~~~i~ 314 (519)
T KOG0331|consen 239 RVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR---QTLMFSATWPKEVRQLAEDFLNNPIQINVGNKK-ELKANHNIR 314 (519)
T ss_pred ceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc---cEEEEeeeccHHHHHHHHHHhcCceEEEecchh-hhhhhcchh
Confidence 77777765 1233345556676766666 2222322 2233334445554433333333221 111111111
Q ss_pred hhhcccccchhhhcccccHHHHHHHHHHhh--hcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHh
Q psy17912 523 NEFRIGRASILVSHYNKSQQERDRVLNEFR--IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVL 600 (779)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (779)
. + +-+.+--.-.....++|+++. .+.+.||||+|||.||++++.|+..||||++| ||||+|+||||||
T Consensus 315 q-i------ve~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~i---HGd~sQ~eR~~~L 384 (519)
T KOG0331|consen 315 Q-I------VEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAI---HGDKSQSERDWVL 384 (519)
T ss_pred h-h------hhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeee---cccccHHHHHHHH
Confidence 0 0 001110011345666999997 44489999999999999999999999999999 9999999999999
Q ss_pred hhhhcCCceeEEec
Q psy17912 601 NEFRIGRASILVSH 614 (779)
Q Consensus 601 ~~~~~~~~~~~~~~ 614 (779)
++||+|++||||.-
T Consensus 385 ~~FreG~~~vLVAT 398 (519)
T KOG0331|consen 385 KGFREGKSPVLVAT 398 (519)
T ss_pred HhcccCCcceEEEc
Confidence 99999999999974
No 113
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.82 E-value=2.5e-18 Score=197.72 Aligned_cols=288 Identities=21% Similarity=0.258 Sum_probs=200.8
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHH
Q psy17912 141 KKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETV 220 (779)
Q Consensus 141 ~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 220 (779)
+.+.+.-..+|...|.--...+..|++.-+.||||.|||. |.+.+-..+.. +|.++++|+||+.|+.|+++.
T Consensus 73 ~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTT-fg~~~sl~~a~-------kgkr~yii~PT~~Lv~Q~~~k 144 (1187)
T COG1110 73 EFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTT-FGLLMSLYLAK-------KGKRVYIIVPTTTLVRQVYER 144 (1187)
T ss_pred HHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchhH-HHHHHHHHHHh-------cCCeEEEEecCHHHHHHHHHH
Confidence 3334433349999999999999999999999999999994 54444444443 256899999999999999999
Q ss_pred HHHhcccCC-ceEEE-EeCCCCChhhH---HHhh-cCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC---
Q psy17912 221 ANDFGSATA-TRVAC-VFGGAPKGPQV---KALQ-TGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG--- 291 (779)
Q Consensus 221 ~~~~~~~~~-l~v~~-~~gg~~~~~~~---~~l~-~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~--- 291 (779)
+++++...+ ..+.. .++..+..+.. ..+. .+.||+|+|..-|...+.. +.--++++|++|.+|.++..+
T Consensus 145 l~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNv 222 (1187)
T COG1110 145 LKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNV 222 (1187)
T ss_pred HHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccH
Confidence 999987666 44433 34443433322 2233 3689999999766655432 111368999999999877543
Q ss_pred --------chHH-------HHHHHhhc------------------------CCCCceEEeeccccHHH--HHHHHHhccC
Q psy17912 292 --------FEPQ-------IRKIIGQI------------------------RPDRQVLMWSATWPKEV--QKLAEDFLVD 330 (779)
Q Consensus 292 --------f~~~-------l~~il~~l------------------------~~~~qilllSAT~~~~v--~~l~~~~l~~ 330 (779)
|... +.++...+ .+..+++..|||..+.- ..+.+.++.
T Consensus 223 DriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlg- 301 (1187)
T COG1110 223 DRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLG- 301 (1187)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhC-
Confidence 3221 11111111 13468899999974431 233444432
Q ss_pred cEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecc---hhHHHHHHHHHHhCCCeEEEEcC
Q psy17912 331 YVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVET---KRKADDITRSVRNKGWAAVAIHG 407 (779)
Q Consensus 331 ~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s---~~~ae~L~~~L~~~g~~v~~ihg 407 (779)
..++... ....|+...+... ....++..+++.+ +.-.|||++. ++.+++|+++|+.+|+++..+|+
T Consensus 302 ---FevG~~~-~~LRNIvD~y~~~---~~~e~~~elvk~l----G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a 370 (1187)
T COG1110 302 ---FEVGSGG-EGLRNIVDIYVES---ESLEKVVELVKKL----GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHA 370 (1187)
T ss_pred ---CccCccc-hhhhheeeeeccC---ccHHHHHHHHHHh----CCCeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeec
Confidence 2333322 2334554443333 4556677778776 4568999999 99999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCcEEEEe----cccccccccCcccccccccceeEEEEcCCCC
Q psy17912 408 NKSQQERDRVLNEFRIGRASILVSQ----YNKSQQERDRVLNEFRIGRASILVSQYKESQ 463 (779)
Q Consensus 408 ~~~~~eR~~il~~F~~G~~~ILVAT----~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~ 463 (779)
. .++.++.|..|++++||.. .++-||||+|.. +.++|.|+.|.
T Consensus 371 ~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~r--------irYaIF~GvPk 417 (1187)
T COG1110 371 E-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHR--------IRYAVFYGVPK 417 (1187)
T ss_pred c-----chhhhhhhccCceeEEEEecccccceeecCCchhh--------eeEEEEecCCc
Confidence 4 3788999999999999987 489999999974 45888999883
No 114
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.80 E-value=5.6e-18 Score=169.31 Aligned_cols=187 Identities=39% Similarity=0.629 Sum_probs=154.9
Q ss_pred cCCCCCCHHHHHHHHHHhcC-CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 146 MGFQAPTAIQAQGWPIALSG-CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g-~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
.++..|+++|.++++.+... +++++.+|||+|||.++..+++..+.... ..+++|++|+.+++.|+.+.+..+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~------~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK------GKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC------CCcEEEEeCCHHHHHHHHHHHHHH
Confidence 56788999999999999998 99999999999999999999888776532 347999999999999999999888
Q ss_pred cccCCceEEEEeCCCCChhhHHHhhcCC-eEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc
Q psy17912 225 GSATATRVACVFGGAPKGPQVKALQTGA-EIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI 303 (779)
Q Consensus 225 ~~~~~l~v~~~~gg~~~~~~~~~l~~~~-~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l 303 (779)
............++.........+..+. +|+++|++.+.+.+.........++++|+||||.+....+...+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 7655534455555555455555555555 999999999999998776677889999999999988766788888888888
Q ss_pred CCCCceEEeeccccHHHHHHHHHhccCcEEEecCC
Q psy17912 304 RPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGS 338 (779)
Q Consensus 304 ~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~ 338 (779)
++..+++++|||+++........+..+.+.+....
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 78899999999999998888888887766665544
No 115
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.80 E-value=3e-17 Score=199.81 Aligned_cols=299 Identities=16% Similarity=0.148 Sum_probs=183.9
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHH----HHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccC
Q psy17912 135 FPPYIMKKIYEMGFQAPTAIQAQGWP----IALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPT 210 (779)
Q Consensus 135 l~~~l~~~l~~~g~~~p~~~Q~~~i~----~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Pt 210 (779)
+.+.+.+.+...||. ++|.|.+.+. .+.+++++++.||||+|||++|++|++.++.. +.+++|.+||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~~--------~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAIT--------EKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhcC--------CCeEEEEeCc
Confidence 344666777667776 8999998776 55578999999999999999999999886652 3379999999
Q ss_pred HHHHHHHHH-HHHHhcccCC--ceEEEEeCCCCC---------------hhh----------------------------
Q psy17912 211 RELAQQIET-VANDFGSATA--TRVACVFGGAPK---------------GPQ---------------------------- 244 (779)
Q Consensus 211 r~La~Q~~~-~~~~~~~~~~--l~v~~~~gg~~~---------------~~~---------------------------- 244 (779)
++|..|+.. .+..+.+.++ ++++.+.|.... ..+
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999865 4554443333 555555543211 000
Q ss_pred ----H------------------------HHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC-----
Q psy17912 245 ----V------------------------KALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG----- 291 (779)
Q Consensus 245 ----~------------------------~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~----- 291 (779)
+ +.....++|||+...-|++.+......+....++||||||++.+..
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d~a~~~~~ 461 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPDIAENQLQ 461 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHHHHHHHhc
Confidence 0 0011135899999988877664443345666899999999887411
Q ss_pred --c-----hHH---H----------------------------------------------------------HH---HH
Q psy17912 292 --F-----EPQ---I----------------------------------------------------------RK---II 300 (779)
Q Consensus 292 --f-----~~~---l----------------------------------------------------------~~---il 300 (779)
+ ... + .. .+
T Consensus 462 ~~ls~~~~~~~l~~l~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~~~ 541 (850)
T TIGR01407 462 EELDYADIKYQIDLIGKGENEQLLKRIQQLEKQEILEKLFDFETKDILKDLQAILDKLNKLLQIFSELSHKTVDQLRKFD 541 (850)
T ss_pred ceeCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 0 000 0 00 00
Q ss_pred hh--------------------------------c----------------CCCCceEEeeccccH--HHHHHHHHhccC
Q psy17912 301 GQ--------------------------------I----------------RPDRQVLMWSATWPK--EVQKLAEDFLVD 330 (779)
Q Consensus 301 ~~--------------------------------l----------------~~~~qilllSAT~~~--~v~~l~~~~l~~ 330 (779)
.. + +....+|++|||+.. ....+...+..+
T Consensus 542 ~~~~~~~~~l~~~~~~~~~~wi~~~~~~~~~~~~l~~~pl~~~~~l~~~~~~~~~~~il~SATL~~~~~~~~~~~~lGl~ 621 (850)
T TIGR01407 542 LALKDDFKNIEQSLKEGHTSWISIENLQQKSTIRLYIKDYEVGDVLTKRLLPKFKSLIFTSATLKFSHSFESFPQLLGLT 621 (850)
T ss_pred HHHHHHHHHHHHHhccCCeEEEEecCCCCCceEEEEeeeCcHHHHHHHHHhccCCeEEEEecccccCCChHHHHHhcCCC
Confidence 00 0 012467899999863 223333333222
Q ss_pred c-EEEecCCCCCCCccceEEEEE-ecc------ccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHh----C
Q psy17912 331 Y-VQLNIGSLNPTANHNIVQIVD-VCQ------EHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRN----K 398 (779)
Q Consensus 331 ~-~~i~i~~~~~~~~~~i~~~~~-~~~------~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~----~ 398 (779)
. ....+.........+..-++. ..+ ...-...+...+..+.....+++|||++|.+..+.+++.|.. .
T Consensus 622 ~~~~~~~~~spf~~~~~~~l~v~~d~~~~~~~~~~~~~~~ia~~i~~l~~~~~g~~LVlftS~~~l~~v~~~L~~~~~~~ 701 (850)
T TIGR01407 622 DVHFNTIEPTPLNYAENQRVLIPTDAPAIQNKSLEEYAQEIASYIIEITAITSPKILVLFTSYEMLHMVYDMLNELPEFE 701 (850)
T ss_pred ccccceecCCCCCHHHcCEEEecCCCCCCCCCChHHHHHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHhhhcccc
Confidence 1 111111111010111111111 011 011122344444444444568999999999999999999975 2
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccc
Q psy17912 399 GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLN 445 (779)
Q Consensus 399 g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~ 445 (779)
++.+ +..+.. ..|..+++.|++++..||++|+.+.+|||+|+..
T Consensus 702 ~~~~--l~q~~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~g~~ 745 (850)
T TIGR01407 702 GYEV--LAQGIN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFPGNG 745 (850)
T ss_pred CceE--EecCCC-ccHHHHHHHHHhCCCeEEEEcceeecccccCCCc
Confidence 3443 334433 5789999999999999999999999999999865
No 116
>KOG0949|consensus
Probab=99.80 E-value=1.3e-18 Score=197.86 Aligned_cols=159 Identities=19% Similarity=0.171 Sum_probs=115.7
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc-cC
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS-AT 228 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~-~~ 228 (779)
.|..+|.+.+..+-.+..++++|||.+|||.+--..+=.++.. .....+|+++|+++|++|+...+..... ..
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLRe------sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRE------SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhh------cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 4788999999999999999999999999997644444333433 2345799999999999999887766542 22
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcC---CcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCC
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQG---TINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRP 305 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~---~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~ 305 (779)
-.+-..+.|....+-... .-.|+|+|+-|+.+-.++... ....+++.++|+||+|.+....-....+.++..+
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li-- 660 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI-- 660 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc--
Confidence 223333444433322222 224899999999999888762 3457789999999999988775555555665554
Q ss_pred CCceEEeeccccH
Q psy17912 306 DRQVLMWSATWPK 318 (779)
Q Consensus 306 ~~qilllSAT~~~ 318 (779)
.++++++|||+.+
T Consensus 661 ~CP~L~LSATigN 673 (1330)
T KOG0949|consen 661 PCPFLVLSATIGN 673 (1330)
T ss_pred CCCeeEEecccCC
Confidence 6789999999743
No 117
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.79 E-value=4.2e-17 Score=190.79 Aligned_cols=117 Identities=18% Similarity=0.175 Sum_probs=100.9
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q psy17912 359 KDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQ 438 (779)
Q Consensus 359 k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~G 438 (779)
+...|..-+... ...+.++||||++++.++.|++.|.+.|+++..+||++++.+|.++++.|+.|++.|||||+++++|
T Consensus 427 qi~~Ll~eI~~~-~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rG 505 (655)
T TIGR00631 427 QVDDLLSEIRQR-VARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREG 505 (655)
T ss_pred hHHHHHHHHHHH-HcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCC
Confidence 333444444433 2357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccccccceeEEEEcC-----CCCCHHHHHHHhccCCCCCCeEEEEE
Q psy17912 439 ERDRVLNEFRIGRASILVSQYK-----ESQQKRDRVLNEFRIGRASILVSHYN 486 (779)
Q Consensus 439 IDip~v~~~~~~~~~~~VI~y~-----~p~s~~~yiQR~GRaGR~g~~~~~~~ 486 (779)
+|+|.++ +|++++ .|.+..+|+||+||+||.. .|.++.
T Consensus 506 fDiP~v~---------lVvi~DadifG~p~~~~~~iqriGRagR~~-~G~vi~ 548 (655)
T TIGR00631 506 LDLPEVS---------LVAILDADKEGFLRSERSLIQTIGRAARNV-NGKVIM 548 (655)
T ss_pred eeeCCCc---------EEEEeCcccccCCCCHHHHHHHhcCCCCCC-CCEEEE
Confidence 9999998 888887 7999999999999999984 343333
No 118
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=5.3e-17 Score=185.19 Aligned_cols=313 Identities=18% Similarity=0.154 Sum_probs=208.5
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
-.|++.|.-+.-.++.|+ |+.+.||.|||+++.+|++..... |..|.|++|+.-||.+-++++..+...+
T Consensus 77 ~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~L 146 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEAL 146 (764)
T ss_pred CCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHhc
Confidence 478899999998888875 779999999999999999887765 5579999999999999999999999999
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHH-HHHHcC------CcCCCCeeEEEEccchhhhcCC----------
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLI-DYLEQG------TINLHRTSYLVLDEADRMLDMG---------- 291 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll-~~l~~~------~~~l~~i~~lViDEaH~l~~~~---------- 291 (779)
|+++.++.++.+..+.... ..|||+++|..-|- ++|..+ ....+.+.+.||||+|.++-..
T Consensus 147 GLsvg~i~~~~~~~err~a--Y~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLIDeArtPLiISg~ 224 (764)
T PRK12326 147 GLTVGWITEESTPEERRAA--YACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLVDEALVPLVLAGS 224 (764)
T ss_pred CCEEEEECCCCCHHHHHHH--HcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhheeccccCceeeeCC
Confidence 9999999887665433222 35899999987652 333322 1234668899999999765311
Q ss_pred -----chHHHHHHHhhcCC--------C----------------------------------------------------
Q psy17912 292 -----FEPQIRKIIGQIRP--------D---------------------------------------------------- 306 (779)
Q Consensus 292 -----f~~~l~~il~~l~~--------~---------------------------------------------------- 306 (779)
....+..+...+.+ .
T Consensus 225 ~~~~~~y~~~~~~v~~L~~~~dy~ide~~k~v~LTe~G~~~~e~~l~~~~ly~~~~~~~~~~~i~~AL~A~~l~~~d~dY 304 (764)
T PRK12326 225 TPGEAPRGEIAELVRRLREGKDYEIDDDGRNVHLTDKGARKVEKALGGIDLYSEEHVGTTLTQVNVALHAHALLQRDVHY 304 (764)
T ss_pred CcchhHHHHHHHHHHhcCcCCcEEEEcCCCeeEecHHHHHHHHHHcCCccccCcchhHHHHHHHHHHHHHHHHHhcCCcE
Confidence 11112222222211 0
Q ss_pred ----------------------------------------------------------CceEEeeccccHHHHHHHHHhc
Q psy17912 307 ----------------------------------------------------------RQVLMWSATWPKEVQKLAEDFL 328 (779)
Q Consensus 307 ----------------------------------------------------------~qilllSAT~~~~v~~l~~~~l 328 (779)
.++.+||.|...+..++.+-|.
T Consensus 305 iV~dgeV~iVDe~TGRvm~grrwsdGLHQaIEaKE~v~i~~e~~t~AsIT~QnfFr~Y~kLsGMTGTa~t~~~Ef~~iY~ 384 (764)
T PRK12326 305 IVRDGKVHLINASRGRIAQLQRWPDGLQAAVEAKEGLETTETGEVLDTITVQALIGRYPTVCGMTGTAVAAGEQLRQFYD 384 (764)
T ss_pred EEECCEEEEEECCCCCcCCCCccChHHHHHHHHHcCCCCCCCceeeehhhHHHHHHhcchheeecCCChhHHHHHHHHhC
Confidence 1334444444444333333333
Q ss_pred cCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCC
Q psy17912 329 VDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGN 408 (779)
Q Consensus 329 ~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~ 408 (779)
.+.+. ++...+........ ..+.....|...+.+-+..+ ...+.||||.+.|.+.++.|+..|.+.|++...+++.
T Consensus 385 l~Vv~--IPtnkp~~R~d~~d-~iy~t~~~k~~Aii~ei~~~-~~~GrPVLVgt~sI~~SE~ls~~L~~~gI~h~vLNAk 460 (764)
T PRK12326 385 LGVSV--IPPNKPNIREDEAD-RVYATAAEKNDAIVEHIAEV-HETGQPVLVGTHDVAESEELAERLRAAGVPAVVLNAK 460 (764)
T ss_pred CcEEE--CCCCCCceeecCCC-ceEeCHHHHHHHHHHHHHHH-HHcCCCEEEEeCCHHHHHHHHHHHHhCCCcceeeccC
Confidence 33221 11111111111111 12223334555555544444 2368999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHHHhcC-CCcEEEEecccccccccCcc--------cccccccceeEEEEcCCCCCHHHHHHHhccCCCCC
Q psy17912 409 KSQQERDRVLNEFRIG-RASILVSQYNKSQQERDRVL--------NEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 409 ~~~~eR~~il~~F~~G-~~~ILVAT~v~~~GIDip~v--------~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g 479 (779)
-...|-+-|-+ .| .-.|-|||++|+||.|+.-- .+-..+. .+||-...+.|..---|-.||+||.|
T Consensus 461 ~~~~EA~IIa~---AG~~gaVTIATNMAGRGTDIkLg~~~~~~~~~V~~~GG--LhVIgTerheSrRID~QLrGRaGRQG 535 (764)
T PRK12326 461 NDAEEARIIAE---AGKYGAVTVSTQMAGRGTDIRLGGSDEADRDRVAELGG--LHVIGTGRHRSERLDNQLRGRAGRQG 535 (764)
T ss_pred chHhHHHHHHh---cCCCCcEEEEecCCCCccCeecCCCcccchHHHHHcCC--cEEEeccCCchHHHHHHHhcccccCC
Confidence 55444222222 34 34699999999999997621 1112233 37888888999888899999999999
Q ss_pred CeE
Q psy17912 480 ILV 482 (779)
Q Consensus 480 ~~~ 482 (779)
.+|
T Consensus 536 DpG 538 (764)
T PRK12326 536 DPG 538 (764)
T ss_pred CCC
Confidence 777
No 119
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.78 E-value=3.1e-17 Score=193.86 Aligned_cols=300 Identities=15% Similarity=0.135 Sum_probs=179.0
Q ss_pred CCHHHHHHHHHHh----c------CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHH
Q psy17912 151 PTAIQAQGWPIAL----S------GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETV 220 (779)
Q Consensus 151 p~~~Q~~~i~~il----~------g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 220 (779)
++++|.+|+..+. + .+..+++.+||||||++.+..+...+.. ...+++|||+|+.+|..|+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~------~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALEL------LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhh------cCCCeEEEEECcHHHHHHHHHH
Confidence 6889999998764 2 2579999999999998876655443321 2367999999999999999999
Q ss_pred HHHhcccCCceEEEEeCCCCChhhHHHhh-cCCeEEEeChHHHHHHHHcC--CcCCCCe-eEEEEccchhhhcCCchHHH
Q psy17912 221 ANDFGSATATRVACVFGGAPKGPQVKALQ-TGAEIVIATPGRLIDYLEQG--TINLHRT-SYLVLDEADRMLDMGFEPQI 296 (779)
Q Consensus 221 ~~~~~~~~~l~v~~~~gg~~~~~~~~~l~-~~~~IiV~Tpe~Ll~~l~~~--~~~l~~i-~~lViDEaH~l~~~~f~~~l 296 (779)
+..+..... .+..+...-...+. ....|+|+|.++|...+... ....... -+||+||||+.... .+
T Consensus 313 f~~~~~~~~------~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~----~~ 382 (667)
T TIGR00348 313 FQSLQKDCA------ERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG----EL 382 (667)
T ss_pred HHhhCCCCC------cccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch----HH
Confidence 998853210 11111111222222 23689999999998654321 1111111 28999999986532 34
Q ss_pred HHHHhhcCCCCceEEeeccccHHHH-HHHHHhc---cCcEEEecCCCCCCCccceEEEEEe--------cc---------
Q psy17912 297 RKIIGQIRPDRQVLMWSATWPKEVQ-KLAEDFL---VDYVQLNIGSLNPTANHNIVQIVDV--------CQ--------- 355 (779)
Q Consensus 297 ~~il~~l~~~~qilllSAT~~~~v~-~l~~~~l---~~~~~i~i~~~~~~~~~~i~~~~~~--------~~--------- 355 (779)
...+...-|+...++||||+-..-. .-...+. .+++.. .. ........+...+.+ ..
T Consensus 383 ~~~l~~~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~-Y~-~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~ 460 (667)
T TIGR00348 383 AKNLKKALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHR-YF-ITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFD 460 (667)
T ss_pred HHHHHhhCCCCcEEEEeCCCcccccccccccccCCCCCeEEE-ee-HHHHhhcCCeeeEEEEecchhhccChHHHHHHHH
Confidence 4555444467889999999742100 0001111 111111 00 000000000000000 00
Q ss_pred -------c----cc---------h-------hHHHHHHHHHhc-------cCCCCcEEEEecchhHHHHHHHHHHhC---
Q psy17912 356 -------E----HE---------K-------DYKLQGLLSQIG-------SERTSKTIIFVETKRKADDITRSVRNK--- 398 (779)
Q Consensus 356 -------~----~~---------k-------~~~L~~ll~~i~-------~~~~~kvLVF~~s~~~ae~L~~~L~~~--- 398 (779)
. .. + ...+..+...+. .....+++|||.++..|..+++.|.+.
T Consensus 461 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~ 540 (667)
T TIGR00348 461 EIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNE 540 (667)
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhccc
Confidence 0 00 0 000111111111 113589999999999999999998764
Q ss_pred --CCeEEEEcCCCCHH---------------------HHHHHHHHHhc-CCCcEEEEecccccccccCccccccccccee
Q psy17912 399 --GWAAVAIHGNKSQQ---------------------ERDRVLNEFRI-GRASILVSQYNKSQQERDRVLNEFRIGRASI 454 (779)
Q Consensus 399 --g~~v~~ihg~~~~~---------------------eR~~il~~F~~-G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~ 454 (779)
+..+..+++..+.+ ....+++.|+. +..+|||+++.+.+|+|.|.++
T Consensus 541 ~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~--------- 611 (667)
T TIGR00348 541 KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILN--------- 611 (667)
T ss_pred ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccc---------
Confidence 24556666654332 23478889976 6889999999999999999986
Q ss_pred EEEEcCCCCCHHHHHHHhccCCCC
Q psy17912 455 LVSQYKESQQKRDRVLNEFRIGRA 478 (779)
Q Consensus 455 ~VI~y~~p~s~~~yiQR~GRaGR~ 478 (779)
. +-.+-|..-..++|.+||+.|.
T Consensus 612 t-LyldKplk~h~LlQai~R~nR~ 634 (667)
T TIGR00348 612 T-LYLDKPLKYHGLLQAIARTNRI 634 (667)
T ss_pred e-EEEeccccccHHHHHHHHhccc
Confidence 3 2334455556789999999994
No 120
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.77 E-value=3.9e-17 Score=189.46 Aligned_cols=305 Identities=20% Similarity=0.211 Sum_probs=206.0
Q ss_pred CCCHHHHHHHHHHhcC----CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 150 APTAIQAQGWPIALSG----CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g----~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
.+++-|+.++..+.+. +..++.+.||||||.+|+-.+-..+.. |..+|||+|-.+|..|+.+.++...
T Consensus 198 ~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~--------GkqvLvLVPEI~Ltpq~~~rf~~rF 269 (730)
T COG1198 198 ALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ--------GKQVLVLVPEIALTPQLLARFKARF 269 (730)
T ss_pred ccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc--------CCEEEEEeccccchHHHHHHHHHHh
Confidence 5678899999998765 679999999999999998777776655 6689999999999999999888764
Q ss_pred ccCCceEEEEeCCCCChhhHHHh----hcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhh--hcCC-chHHHH-
Q psy17912 226 SATATRVACVFGGAPKGPQVKAL----QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRM--LDMG-FEPQIR- 297 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l----~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l--~~~~-f~~~l~- 297 (779)
+.++..++++.+..+....+ .....|+|+|= ..++ ..++++++|||||=|-- .+.+ .+..-+
T Consensus 270 ---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtR----SAlF---~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 270 ---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTR----SALF---LPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred ---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEec----hhhc---CchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 57788888887766554333 24589999994 1221 25889999999999942 2222 222222
Q ss_pred -HHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchh-----HHHHHHHHHhc
Q psy17912 298 -KIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKD-----YKLQGLLSQIG 371 (779)
Q Consensus 298 -~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~-----~~L~~ll~~i~ 371 (779)
.++..-..+.++|+-|||..-+ .+.......+..+.+..........-...+.+-.+..+. ..|.+.++.-.
T Consensus 340 vA~~Ra~~~~~pvvLgSATPSLE--S~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l 417 (730)
T COG1198 340 VAVLRAKKENAPVVLGSATPSLE--SYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTL 417 (730)
T ss_pred HHHHHHHHhCCCEEEecCCCCHH--HHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHH
Confidence 2223333578999999997644 444333333344443333222212222233332222222 33444443322
Q ss_pred cCCCCcEEEEecchh------------------------------------------------------------HHHHH
Q psy17912 372 SERTSKTIIFVETKR------------------------------------------------------------KADDI 391 (779)
Q Consensus 372 ~~~~~kvLVF~~s~~------------------------------------------------------------~ae~L 391 (779)
+.+.++|+|+|.+- -++.+
T Consensus 418 -~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~Gteri 496 (730)
T COG1198 418 -ERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERI 496 (730)
T ss_pred -hcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHH
Confidence 35788999988762 44777
Q ss_pred HHHHHhC--CCeEEEEcCCCCHH--HHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCC----
Q psy17912 392 TRSVRNK--GWAAVAIHGNKSQQ--ERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQ---- 463 (779)
Q Consensus 392 ~~~L~~~--g~~v~~ihg~~~~~--eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~---- 463 (779)
++.|.+. +.++..+.++.... .-+..++.|.+|+.+|||.|.+++.|.|+|++. .+.|++-|.-.
T Consensus 497 eeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vt-------LVgvl~aD~~L~~~D 569 (730)
T COG1198 497 EEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVT-------LVGVLDADTGLGSPD 569 (730)
T ss_pred HHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccce-------EEEEEechhhhcCCC
Confidence 7777764 67788888887753 357789999999999999999999999999987 44555544221
Q ss_pred ------CHHHHHHHhccCCCCCCeE
Q psy17912 464 ------QKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 464 ------s~~~yiQR~GRaGR~g~~~ 482 (779)
...-+.|-+|||||++..|
T Consensus 570 fRA~Er~fqll~QvaGRAgR~~~~G 594 (730)
T COG1198 570 FRASERTFQLLMQVAGRAGRAGKPG 594 (730)
T ss_pred cchHHHHHHHHHHHHhhhccCCCCC
Confidence 2334579999999987555
No 121
>KOG0925|consensus
Probab=99.76 E-value=4.3e-17 Score=173.83 Aligned_cols=319 Identities=17% Similarity=0.147 Sum_probs=203.9
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEE
Q psy17912 127 IQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLV 206 (779)
Q Consensus 127 i~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLi 206 (779)
+..|...+.++...+-+++..---....+.+.+..+.+++-++++|.||||||...-...+....... ..+..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~-------~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL-------TGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc-------cceee
Confidence 55677788888888887754333335566677788889999999999999999664333444333321 35788
Q ss_pred EccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch-
Q psy17912 207 LAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD- 285 (779)
Q Consensus 207 l~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH- 285 (779)
..|.|.-|.+++... +++..+..+.-+|..-..++.... ..=+-+||.++|+.-..++. .+.++++||+||||
T Consensus 97 TQprrvaamsva~RV---adEMDv~lG~EVGysIrfEdC~~~--~T~Lky~tDgmLlrEams~p-~l~~y~viiLDeahE 170 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRV---ADEMDVTLGEEVGYSIRFEDCTSP--NTLLKYCTDGMLLREAMSDP-LLGRYGVIILDEAHE 170 (699)
T ss_pred cCchHHHHHHHHHHH---HHHhccccchhccccccccccCCh--hHHHHHhcchHHHHHHhhCc-ccccccEEEechhhh
Confidence 889998888765433 333344444444444333221100 01234577777776554433 48899999999999
Q ss_pred hhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccch-hHHHH
Q psy17912 286 RMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEK-DYKLQ 364 (779)
Q Consensus 286 ~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k-~~~L~ 364 (779)
+.+..+....+.+-+..-+|+.++|.||||+... + ++.|..++..+.+.... .+..++-...+.+. ...+.
T Consensus 171 RtlATDiLmGllk~v~~~rpdLk~vvmSatl~a~--K-fq~yf~n~Pll~vpg~~-----PvEi~Yt~e~erDylEaair 242 (699)
T KOG0925|consen 171 RTLATDILMGLLKEVVRNRPDLKLVVMSATLDAE--K-FQRYFGNAPLLAVPGTH-----PVEIFYTPEPERDYLEAAIR 242 (699)
T ss_pred hhHHHHHHHHHHHHHHhhCCCceEEEeecccchH--H-HHHHhCCCCeeecCCCC-----ceEEEecCCCChhHHHHHHH
Confidence 5554433333333333446899999999998643 3 44555555445443322 12212111122222 22333
Q ss_pred HHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC---------CCeEEEEcCCCCHHHHHHHHHHHhc---C--CCcEEE
Q psy17912 365 GLLSQIGSERTSKTIIFVETKRKADDITRSVRNK---------GWAAVAIHGNKSQQERDRVLNEFRI---G--RASILV 430 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~---------g~~v~~ihg~~~~~eR~~il~~F~~---G--~~~ILV 430 (779)
.+++-...+..+-+|||....++.+..++.+... .+.|..+| +.++..+++.... | ..+|+|
T Consensus 243 tV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 243 TVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 4444445567889999999999999999988742 25688888 5555566554432 2 368999
Q ss_pred EecccccccccCcccccccccceeEEEEcC------------------CCCCHHHHHHHhccCCCCC
Q psy17912 431 SQYNKSQQERDRVLNEFRIGRASILVSQYK------------------ESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 431 AT~v~~~GIDip~v~~~~~~~~~~~VI~y~------------------~p~s~~~yiQR~GRaGR~g 479 (779)
+|++++..+.++.+. +||+.+ .|-|..+-.||+|||||..
T Consensus 319 stniaetsltidgiv---------~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~ 376 (699)
T KOG0925|consen 319 STNIAETSLTIDGIV---------FVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTR 376 (699)
T ss_pred EecchheeeeeccEE---------EEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCC
Confidence 999999999998876 777644 3667788899999999974
No 122
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.76 E-value=6.1e-17 Score=184.16 Aligned_cols=298 Identities=18% Similarity=0.139 Sum_probs=188.5
Q ss_pred CCCCHHHHHHHHHHh----cCC-CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHH
Q psy17912 149 QAPTAIQAQGWPIAL----SGC-DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAND 223 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il----~g~-dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 223 (779)
..|+.+|..||..+. +|+ -+++++.||+|||.+++..+...+... .-.++|+|+-+++|+.|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~------~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSG------WVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcc------hhheeeEEechHHHHHHHHHHHHH
Confidence 458999999997765 443 499999999999987765444444332 245899999999999999999888
Q ss_pred hcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC-----cCCCCeeEEEEccchhhhcCCchHHHHH
Q psy17912 224 FGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT-----INLHRTSYLVLDEADRMLDMGFEPQIRK 298 (779)
Q Consensus 224 ~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~-----~~l~~i~~lViDEaH~l~~~~f~~~l~~ 298 (779)
+...... +..+.+... ...++|.++|.+.+...+.... +....+++|||||||+-. ......
T Consensus 238 ~~P~~~~-~n~i~~~~~--------~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi----~~~~~~ 304 (875)
T COG4096 238 FLPFGTK-MNKIEDKKG--------DTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGI----YSEWSS 304 (875)
T ss_pred hCCCccc-eeeeecccC--------CcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhH----HhhhHH
Confidence 8654321 112221111 1247999999999998886542 334558999999999855 334557
Q ss_pred HHhhcCCCCceEEeeccccHHHHHHHHHhc-cCcE--------------------EEecCC----CCCCCc-cceEEEEE
Q psy17912 299 IIGQIRPDRQVLMWSATWPKEVQKLAEDFL-VDYV--------------------QLNIGS----LNPTAN-HNIVQIVD 352 (779)
Q Consensus 299 il~~l~~~~qilllSAT~~~~v~~l~~~~l-~~~~--------------------~i~i~~----~~~~~~-~~i~~~~~ 352 (779)
|+.++.. -++++|||+...+..-.-.|+ ..|+ .+.... ..+... ........
T Consensus 305 I~dYFdA--~~~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~ 382 (875)
T COG4096 305 ILDYFDA--ATQGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGE 382 (875)
T ss_pred HHHHHHH--HHHhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcc
Confidence 7776632 244459997654332222222 1111 111100 000000 00000000
Q ss_pred ec--c-------c-------cchhHHHHHHHHHhccC-----CCCcEEEEecchhHHHHHHHHHHhC-----CCeEEEEc
Q psy17912 353 VC--Q-------E-------HEKDYKLQGLLSQIGSE-----RTSKTIIFVETKRKADDITRSVRNK-----GWAAVAIH 406 (779)
Q Consensus 353 ~~--~-------~-------~~k~~~L~~ll~~i~~~-----~~~kvLVF~~s~~~ae~L~~~L~~~-----g~~v~~ih 406 (779)
.. + + ......+...+...+.. ..+|+||||.+..+|+.+.+.|... +--+..|.
T Consensus 383 ~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT 462 (875)
T COG4096 383 AIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKIT 462 (875)
T ss_pred ccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEe
Confidence 00 0 0 01122333334333332 1579999999999999999999864 23366677
Q ss_pred CCCCHHHHHHHHHHHhc--CCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCC
Q psy17912 407 GNKSQQERDRVLNEFRI--GRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRA 478 (779)
Q Consensus 407 g~~~~~eR~~il~~F~~--G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~ 478 (779)
|+-.+.. ..++.|.. ---+|.|+.+++.+|||+|.|. .++.+..-.|..-|.||+||.-|.
T Consensus 463 ~d~~~~q--~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~---------nlVF~r~VrSktkF~QMvGRGTRl 525 (875)
T COG4096 463 GDAEQAQ--ALIDNFIDKEKYPRIAITVDLLTTGVDVPEVV---------NLVFDRKVRSKTKFKQMVGRGTRL 525 (875)
T ss_pred ccchhhH--HHHHHHHhcCCCCceEEehhhhhcCCCchhee---------eeeehhhhhhHHHHHHHhcCcccc
Confidence 7654332 33455543 3356899999999999999976 888888899999999999999995
No 123
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=1.4e-16 Score=186.04 Aligned_cols=313 Identities=16% Similarity=0.147 Sum_probs=202.5
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
-.|+++|.-.--.+..| -|+.+.||.|||+++.+|++..... |..|.|++|+..||.+-++++..+...+
T Consensus 81 m~~ydVQliGg~~Lh~G--~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 81 MRHFDVQLIGGMTLHEG--KIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred CCcchhHHHhhhHhccC--ccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 46777777665555544 5889999999999999999877665 5579999999999999999999999999
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcCC------cCCCCeeEEEEccchhhhcCC----------
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQGT------INLHRTSYLVLDEADRMLDMG---------- 291 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~~------~~l~~i~~lViDEaH~l~~~~---------- 291 (779)
|+++.++.++.+..+..... .++|+++|..-| .++|..+. ...+.+.++||||+|.++-..
T Consensus 151 Gl~v~~i~~~~~~~err~~Y--~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLIDEArtPLIISg~ 228 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAY--AADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILIDEARTPLIISGQ 228 (913)
T ss_pred CCEEEEECCCCCHHHHHHHh--cCCEEEEcccccccchhhccceechhhhcccccceeEechhhheeccccCCceeecCC
Confidence 99999998877655443333 389999998776 34443321 124788999999999765311
Q ss_pred ------chHHHHHHHhhcCC-------------------C----------------------------------------
Q psy17912 292 ------FEPQIRKIIGQIRP-------------------D---------------------------------------- 306 (779)
Q Consensus 292 ------f~~~l~~il~~l~~-------------------~---------------------------------------- 306 (779)
....+..++..+.. .
T Consensus 229 ~~~~~~~y~~~~~~v~~L~~~~~~~~~~~~~~~~y~idek~~~v~LTe~G~~~~e~~~~~~~i~~~~~~ly~~~~~~~~~ 308 (913)
T PRK13103 229 AEDSSKLYIEINRLIPRLKQHIEEVEGQVTQEGHFTIDEKTRQVELNEAGHQFIEEMLTQAGLLAEGESLYSAHNLGLLT 308 (913)
T ss_pred CccchHHHHHHHHHHHHHHhhhhccccccCCCCCeEEEcCCCeeeechHHHHHHHHHhhhCCCcccchhccChhhhHHHH
Confidence 00111111111100 0
Q ss_pred ----------------------------------------------------------------------------CceE
Q psy17912 307 ----------------------------------------------------------------------------RQVL 310 (779)
Q Consensus 307 ----------------------------------------------------------------------------~qil 310 (779)
.++.
T Consensus 309 ~i~~AL~A~~lf~~d~dYiV~dg~V~IVDe~TGR~m~grrwsdGLHQaIEaKE~v~I~~e~~t~AsIT~QnfFr~Y~kLs 388 (913)
T PRK13103 309 HVYAGLRAHKLFHRNVEYIVQDGQVLLIDEHTGRTMPGRRLSEGLHQAIEAKENLNIQAESQTLASTTFQNYFRLYNKLS 388 (913)
T ss_pred HHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCCcCCCCccchHHHHHHHHHcCCCcCCCceeEEeehHHHHHHhcchhc
Confidence 1223
Q ss_pred EeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHH
Q psy17912 311 MWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADD 390 (779)
Q Consensus 311 llSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~ 390 (779)
+||.|...+..++..-|..+.+.+.. ..+........ ..+.....|...+.+-+..+ ...+.||||-+.|.+..+.
T Consensus 389 GMTGTa~te~~Ef~~iY~l~Vv~IPT--nkP~~R~D~~d-~vy~t~~eK~~Ai~~ei~~~-~~~GrPVLVGT~SVe~SE~ 464 (913)
T PRK13103 389 GMTGTADTEAFEFRQIYGLDVVVIPP--NKPLARKDFND-LVYLTAEEKYAAIITDIKEC-MALGRPVLVGTATIETSEH 464 (913)
T ss_pred cCCCCCHHHHHHHHHHhCCCEEECCC--CCCcccccCCC-eEEcCHHHHHHHHHHHHHHH-HhCCCCEEEEeCCHHHHHH
Confidence 33333333333333333222222111 11111111111 12233345555555555554 3368999999999999999
Q ss_pred HHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEecccccccccCcc-------------------------
Q psy17912 391 ITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIG-RASILVSQYNKSQQERDRVL------------------------- 444 (779)
Q Consensus 391 L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G-~~~ILVAT~v~~~GIDip~v------------------------- 444 (779)
|++.|++.+++.-.+++.....|-+-|- ..| .-.|.|||++|+||.|+.--
T Consensus 465 ls~~L~~~gi~h~VLNAk~~~~EA~IIa---~AG~~GaVTIATNMAGRGTDIkLg~n~~~~~~~~~~~~~~~~~~~~~~~ 541 (913)
T PRK13103 465 MSNLLKKEGIEHKVLNAKYHEKEAEIIA---QAGRPGALTIATNMAGRGTDILLGGNWEVEVAALENPTPEQIAQIKADW 541 (913)
T ss_pred HHHHHHHcCCcHHHhccccchhHHHHHH---cCCCCCcEEEeccCCCCCCCEecCCchHHHHHhhhhhhHHHHHHHHHHH
Confidence 9999999999988888764433333332 345 45799999999999997411
Q ss_pred -----cccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeE
Q psy17912 445 -----NEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 445 -----~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~ 482 (779)
.+..++. .+||--..+.|..-=-|-.||+||-|.+|
T Consensus 542 ~~~~e~V~e~GG--LhVIgTerheSrRID~QLrGRaGRQGDPG 582 (913)
T PRK13103 542 QKRHQQVIEAGG--LHVIASERHESRRIDNQLRGRAGRQGDPG 582 (913)
T ss_pred HhHHHHHHHcCC--CEEEeeccCchHHHHHHhccccccCCCCC
Confidence 0112233 37777788888888889999999999776
No 124
>KOG0384|consensus
Probab=99.72 E-value=8.3e-17 Score=187.80 Aligned_cols=377 Identities=18% Similarity=0.227 Sum_probs=234.0
Q ss_pred CCCCHHHHHHHHHHh----cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 149 QAPTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
.+++.||.+.+++++ +++++|+.-..|.|||+..+-.+ ..+.... .-.|| .|||+|...+.. |..++...
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl-~~l~~~~---~~~gp-flvvvplst~~~-W~~ef~~w 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFL-SYLFHSL---QIHGP-FLVVVPLSTITA-WEREFETW 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHH-HHHHHhh---hccCC-eEEEeehhhhHH-HHHHHHHH
Confidence 689999999999887 77899999999999997643222 2222211 12355 489999877665 44445544
Q ss_pred cccCCceEEEEeCCCCChhhHHHhh----c-----CCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHH
Q psy17912 225 GSATATRVACVFGGAPKGPQVKALQ----T-----GAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQ 295 (779)
Q Consensus 225 ~~~~~l~v~~~~gg~~~~~~~~~l~----~-----~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~ 295 (779)
+.+++++.+|....++.++... . .++++++|++.++.-.. .+.--.+.+++|||||++.+. ...
T Consensus 443 ---~~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~--~~~ 515 (1373)
T KOG0384|consen 443 ---TDMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND--ESK 515 (1373)
T ss_pred ---hhhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch--HHH
Confidence 3788899999887766655432 1 37899999988765321 122224679999999998865 444
Q ss_pred HHHHHhhcCCCCceEEeecc-ccHHHHHHHHH--hcc-----------------------------CcEEEe--cCCCCC
Q psy17912 296 IRKIIGQIRPDRQVLMWSAT-WPKEVQKLAED--FLV-----------------------------DYVQLN--IGSLNP 341 (779)
Q Consensus 296 l~~il~~l~~~~qilllSAT-~~~~v~~l~~~--~l~-----------------------------~~~~i~--i~~~~~ 341 (779)
+...+..+.-.. .|++|.| +-+.++++..- |+. .|..+. ....+.
T Consensus 516 l~~~l~~f~~~~-rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdvek 594 (1373)
T KOG0384|consen 516 LYESLNQFKMNH-RLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDVEK 594 (1373)
T ss_pred HHHHHHHhcccc-eeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhhcc
Confidence 445566654444 4555666 23333332211 100 000000 000000
Q ss_pred CCccceEEEEEe--------------------------------------------------------------------
Q psy17912 342 TANHNIVQIVDV-------------------------------------------------------------------- 353 (779)
Q Consensus 342 ~~~~~i~~~~~~-------------------------------------------------------------------- 353 (779)
+......+++.+
T Consensus 595 slp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~ 674 (1373)
T KOG0384|consen 595 SLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEA 674 (1373)
T ss_pred CCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcchHHH
Confidence 111111111111
Q ss_pred ----ccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc---CCC
Q psy17912 354 ----CQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRI---GRA 426 (779)
Q Consensus 354 ----~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~---G~~ 426 (779)
+....|.-.|..||..+ ...+++||||.+..+..+.|+++|...+|+.-.|.|.+..+.|..+++.|.. ..+
T Consensus 675 L~~lI~sSGKlVLLDKLL~rL-k~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~SddF 753 (1373)
T KOG0384|consen 675 LQALIQSSGKLVLLDKLLPRL-KEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDF 753 (1373)
T ss_pred HHHHHHhcCcEEeHHHHHHHH-hcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCCCCce
Confidence 00111222233344444 3457999999999999999999999999999999999999999999999974 467
Q ss_pred cEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCC--eEEEE---EcChHHH---HHHHHh
Q psy17912 427 SILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASI--LVSHY---NKSQQER---DRVLNE 498 (779)
Q Consensus 427 ~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~--~~~~~---~~~~~e~---~~~l~e 498 (779)
.+|+||.+.+-|||+...+ -||.||..+++..=+|..-||-|-|. .+.+| +...-|+ .+.-.+
T Consensus 754 vFLLSTRAGGLGINLatAD---------TVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~TvEeEilERAk~K 824 (1373)
T KOG0384|consen 754 VFLLSTRAGGLGINLATAD---------TVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNTVEEEILERAKLK 824 (1373)
T ss_pred EEEEecccCcccccccccc---------eEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCchHHHHHHHHHHH
Confidence 8999999999999998888 89999999999999998889988883 33333 2232232 112122
Q ss_pred hhccccceeec----ccc----ccHHHHHHhhhhhcccccchhhhccccc----HHHHHHHHHHhh
Q psy17912 499 FRIGRASILVS----HYN----KSQQERDRVLNEFRIGRASILVSHYNKS----QQERDRVLNEFR 552 (779)
Q Consensus 499 ~~~~~~~il~~----~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~ 552 (779)
..++.+.|... ... ....+-..+| ..|+-.+++..-+.. .+++|+||+.-.
T Consensus 825 mvLD~aVIQ~m~t~~~~s~~~~f~K~ELsaIL---KfGA~~lfke~ene~s~~~e~DIDeIL~rae 887 (1373)
T KOG0384|consen 825 MVLDHAVIQRMDTKGKTSKSNPFSKEELSAIL---KFGAYELFKEEENEESKFCEMDIDEILERAE 887 (1373)
T ss_pred hhhHHHHHHhhccccccCCCCCCCHHHHHHHH---HhchHHhhhccccccccccccCHHHHHhhcc
Confidence 22222222111 111 1233444443 678777777754432 357888876543
No 125
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.72 E-value=4.7e-15 Score=174.81 Aligned_cols=117 Identities=17% Similarity=0.173 Sum_probs=100.6
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q psy17912 359 KDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQ 438 (779)
Q Consensus 359 k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~G 438 (779)
+...+...+.... ..+.++||||+++..++.|++.|...|+++..+||++++.+|..+++.|+.|++.|||||+++++|
T Consensus 431 q~~~L~~~L~~~~-~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rG 509 (652)
T PRK05298 431 QVDDLLSEIRKRV-AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREG 509 (652)
T ss_pred cHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCC
Confidence 3344444444432 357889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccccccceeEEEEcCC-----CCCHHHHHHHhccCCCCCCeEEEEE
Q psy17912 439 ERDRVLNEFRIGRASILVSQYKE-----SQQKRDRVLNEFRIGRASILVSHYN 486 (779)
Q Consensus 439 IDip~v~~~~~~~~~~~VI~y~~-----p~s~~~yiQR~GRaGR~g~~~~~~~ 486 (779)
+|+|.++ +|++++. |.+..+|+||+||+||.. .|.++.
T Consensus 510 fdlp~v~---------lVii~d~eifG~~~~~~~yiqr~GR~gR~~-~G~~i~ 552 (652)
T PRK05298 510 LDIPEVS---------LVAILDADKEGFLRSERSLIQTIGRAARNV-NGKVIL 552 (652)
T ss_pred ccccCCc---------EEEEeCCcccccCCCHHHHHHHhccccCCC-CCEEEE
Confidence 9999998 8888774 789999999999999973 454443
No 126
>KOG4150|consensus
Probab=99.71 E-value=1.5e-16 Score=171.83 Aligned_cols=319 Identities=11% Similarity=-0.004 Sum_probs=223.4
Q ss_pred HcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 145 EMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 145 ~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
++..+.+..+|.+++..+.+|+++++.-.|.+||+++|.+.+...+...+ ....+++.|+.+++......+.-.
T Consensus 281 ~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~------~s~~~~~~~~~~~~~~~~~~~~V~ 354 (1034)
T KOG4150|consen 281 KNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH------ATNSLLPSEMVEHLRNGSKGQVVH 354 (1034)
T ss_pred cccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc------ccceecchhHHHHhhccCCceEEE
Confidence 35567788999999999999999999999999999999998877665532 235789999999988654433222
Q ss_pred cc---cCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcC----CCCeeEEEEccchhhhcC---CchH
Q psy17912 225 GS---ATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTIN----LHRTSYLVLDEADRMLDM---GFEP 294 (779)
Q Consensus 225 ~~---~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~----l~~i~~lViDEaH~l~~~---~f~~ 294 (779)
.. ...-.++..+.+.+..+.....+.+.+++++.|.........+... +-...++++||+|..+.. ....
T Consensus 355 ~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~ 434 (1034)
T KOG4150|consen 355 VEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQD 434 (1034)
T ss_pred EEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHH
Confidence 11 1122234445555555566666778999999998877655433322 334467899999965432 1223
Q ss_pred HHHHHHhhc-----CCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEecc------ccc---hh
Q psy17912 295 QIRKIIGQI-----RPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQ------EHE---KD 360 (779)
Q Consensus 295 ~l~~il~~l-----~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~------~~~---k~ 360 (779)
.++.++..+ ..+.|++-.+||+...++....-+..+.+.+....-.++.. +..+.+-+ +.. +.
T Consensus 435 ~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~---K~~V~WNP~~~P~~~~~~~~~i 511 (1034)
T KOG4150|consen 435 QLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSE---KLFVLWNPSAPPTSKSEKSSKV 511 (1034)
T ss_pred HHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCcc---ceEEEeCCCCCCcchhhhhhHH
Confidence 344444333 35789999999998887766665555555443322222222 22222221 112 22
Q ss_pred HHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC----C----CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe
Q psy17912 361 YKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK----G----WAAVAIHGNKSQQERDRVLNEFRIGRASILVSQ 432 (779)
Q Consensus 361 ~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~----g----~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT 432 (779)
.....++.++.. .+-++|.||++++.|+.+....+.. + -.+..|.||...++|.++..+.-.|++.-+|||
T Consensus 512 ~E~s~~~~~~i~-~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaT 590 (1034)
T KOG4150|consen 512 VEVSHLFAEMVQ-HGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIAT 590 (1034)
T ss_pred HHHHHHHHHHHH-cCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEec
Confidence 233334443322 4788999999999999877665532 2 135678999999999999999999999999999
Q ss_pred cccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeE
Q psy17912 433 YNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 433 ~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~ 482 (779)
++++.|||+..++ .|++.+.|.++..+.|.+|||||.....
T Consensus 591 NALELGIDIG~LD---------AVl~~GFP~S~aNl~QQ~GRAGRRNk~S 631 (1034)
T KOG4150|consen 591 NALELGIDIGHLD---------AVLHLGFPGSIANLWQQAGRAGRRNKPS 631 (1034)
T ss_pred chhhhccccccce---------eEEEccCchhHHHHHHHhccccccCCCc
Confidence 9999999999988 9999999999999999999999987443
No 127
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.71 E-value=2.4e-15 Score=162.91 Aligned_cols=154 Identities=19% Similarity=0.187 Sum_probs=113.9
Q ss_pred CCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhcc--CCCCcEEEEec
Q psy17912 306 DRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGS--ERTSKTIIFVE 383 (779)
Q Consensus 306 ~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~--~~~~kvLVF~~ 383 (779)
..|++.+|||..+.-.+... .+.+...+.+..... + .+.+-+.... +.+|+.++.. ..+.++||-+-
T Consensus 386 ~~q~i~VSATPg~~E~e~s~---~~vveQiIRPTGLlD-P----~ievRp~~~Q---vdDL~~EI~~r~~~~eRvLVTtL 454 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSG---GNVVEQIIRPTGLLD-P----EIEVRPTKGQ---VDDLLSEIRKRVAKNERVLVTTL 454 (663)
T ss_pred cCCEEEEECCCChHHHHhcc---CceeEEeecCCCCCC-C----ceeeecCCCc---HHHHHHHHHHHHhcCCeEEEEee
Confidence 46999999998664222211 122333333322111 1 1222222222 3344443322 25689999999
Q ss_pred chhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcC---
Q psy17912 384 TKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYK--- 460 (779)
Q Consensus 384 s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~--- 460 (779)
|++.|+.|.++|...|+++..+|++...-+|.+++.+.+.|.++|||.-+.+-+|||+|.|. +|...|
T Consensus 455 TKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVs---------LVAIlDADK 525 (663)
T COG0556 455 TKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVS---------LVAILDADK 525 (663)
T ss_pred hHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCccee---------EEEEeecCc
Confidence 99999999999999999999999999999999999999999999999999999999999998 666655
Q ss_pred --CCCCHHHHHHHhccCCCCC
Q psy17912 461 --ESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 461 --~p~s~~~yiQR~GRaGR~g 479 (779)
...|-.+++|-+|||.|.-
T Consensus 526 eGFLRse~SLIQtIGRAARN~ 546 (663)
T COG0556 526 EGFLRSERSLIQTIGRAARNV 546 (663)
T ss_pred cccccccchHHHHHHHHhhcc
Confidence 4568899999999999964
No 128
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.70 E-value=1.4e-15 Score=175.68 Aligned_cols=313 Identities=15% Similarity=0.162 Sum_probs=202.3
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
..|+++|.-.--.+..|+ |+.+.||=|||+++.+|++..... |..|-|++..--||..=.+++..+...+
T Consensus 77 ~r~ydVQliGglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 77 KRPYDVQIIGGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CCcCchHHHHHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 377888888776666664 799999999999999999876655 4457888999999999899999999999
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcCC------cCCCCeeEEEEccchhhhc-CC---------
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQGT------INLHRTSYLVLDEADRMLD-MG--------- 291 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~~------~~l~~i~~lViDEaH~l~~-~~--------- 291 (779)
|+.|+++..+.+..+... .-.|||+++|...| .++|..+. ...+.+.+.||||+|.++- ..
T Consensus 147 GLsvG~i~~~~~~~~rr~--aY~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSILIDEArTPLIISg~ 224 (925)
T PRK12903 147 GLSVGINKANMDPNLKRE--AYACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSILIDEAKTPLIISGG 224 (925)
T ss_pred CCceeeeCCCCChHHHHH--hccCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchheeecccCCcccccCC
Confidence 999999887655543322 23589999998776 45554332 2356788999999997652 11
Q ss_pred ------chHHHHHHHhhcCC-------CC---------------------------------------------------
Q psy17912 292 ------FEPQIRKIIGQIRP-------DR--------------------------------------------------- 307 (779)
Q Consensus 292 ------f~~~l~~il~~l~~-------~~--------------------------------------------------- 307 (779)
+...+..++..+.+ ..
T Consensus 225 ~~~~~~~Y~~~~~~v~~L~~~dy~iDek~k~v~LTe~G~~~~E~~l~i~nLy~~~n~~l~h~i~~AL~A~~lf~rd~dYi 304 (925)
T PRK12903 225 QSNDSNLYLAADQFVRTLKEDDYKIDEETKAISLTEKGIKKANKFFKLKNLYDIENSELVHRIQNALRAHKVMKEDVEYI 304 (925)
T ss_pred CccchHHHHHHHHHHHhccccceEEecccceEEECHhHHHHHHHHcCCCcccChhhHHHHHHHHHHHHHHHHHhcCCceE
Confidence 11112222222211 11
Q ss_pred ----------------------------------------------------------ceEEeeccccHHHHHHHHHhcc
Q psy17912 308 ----------------------------------------------------------QVLMWSATWPKEVQKLAEDFLV 329 (779)
Q Consensus 308 ----------------------------------------------------------qilllSAT~~~~v~~l~~~~l~ 329 (779)
++.+||.|...+-.++..-|..
T Consensus 305 V~dg~V~IVDefTGR~m~gRrwsdGLHQaIEAKEgv~I~~e~~TlAsIT~QnfFr~Y~kLsGMTGTA~te~~Ef~~iY~l 384 (925)
T PRK12903 305 VRDGKIELVDQFTGRIMEGRSYSEGLQQAIQAKEMVEIEPETKTLATITYQNFFRLFKKLSGMTGTAKTEEQEFIDIYNM 384 (925)
T ss_pred EECCEEEEEECCCCCCCCCCccchHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhhccCCCCHHHHHHHHHHhCC
Confidence 2233333333332333332222
Q ss_pred CcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCC
Q psy17912 330 DYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNK 409 (779)
Q Consensus 330 ~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~ 409 (779)
+.+.+.. ..+....... ...+.....|...+..-+.... ..+.|+||.|.|.+.++.|++.|.+.|++...+++..
T Consensus 385 ~Vv~IPT--nkP~~R~D~~-d~iy~t~~~K~~Aii~ei~~~~-~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~ 460 (925)
T PRK12903 385 RVNVVPT--NKPVIRKDEP-DSIFGTKHAKWKAVVKEVKRVH-KKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQ 460 (925)
T ss_pred CEEECCC--CCCeeeeeCC-CcEEEcHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccc
Confidence 2221111 0000000000 0122333445555555454443 3689999999999999999999999999999999864
Q ss_pred CHHHHHHHHHHHhcC-CCcEEEEecccccccccCccc-ccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeE
Q psy17912 410 SQQERDRVLNEFRIG-RASILVSQYNKSQQERDRVLN-EFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 410 ~~~eR~~il~~F~~G-~~~ILVAT~v~~~GIDip~v~-~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~ 482 (779)
. +++..+-. ..| .-.|.|||++|+||.|+.--. +..++. .+||....|.|..---|-.||+||.|.+|
T Consensus 461 ~--e~EA~IIa-~AG~~GaVTIATNMAGRGTDI~Lg~~V~~~GG--LhVIgTerheSrRIDnQLrGRaGRQGDpG 530 (925)
T PRK12903 461 N--AREAEIIA-KAGQKGAITIATNMAGRGTDIKLSKEVLELGG--LYVLGTDKAESRRIDNQLRGRSGRQGDVG 530 (925)
T ss_pred h--hhHHHHHH-hCCCCCeEEEecccccCCcCccCchhHHHcCC--cEEEecccCchHHHHHHHhcccccCCCCC
Confidence 4 33333322 445 457999999999999976321 112222 37888888888888889999999999777
No 129
>KOG0387|consensus
Probab=99.68 E-value=1.7e-15 Score=170.50 Aligned_cols=307 Identities=16% Similarity=0.166 Sum_probs=200.3
Q ss_pred CCCHHHHHHHHHHh----cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 150 APTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 150 ~p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
.+.++|++.+.++. ++...|+-..+|.|||...+..+.. +...... ...+|||||. .++.||..++..+.
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaa-L~~S~k~----~~paLIVCP~-Tii~qW~~E~~~w~ 278 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAA-LHHSGKL----TKPALIVCPA-TIIHQWMKEFQTWW 278 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHH-Hhhcccc----cCceEEEccH-HHHHHHHHHHHHhC
Confidence 45799999999886 5667899999999999764433322 1111111 1358999997 56778888888875
Q ss_pred ccCCceEEEEeCCCCCh--------hhH-----HHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCc
Q psy17912 226 SATATRVACVFGGAPKG--------PQV-----KALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGF 292 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~--------~~~-----~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f 292 (779)
. .++|..+++..+.. ... +....+..|+|+|+..+.-. ...+.-..++|+|+||.|++-+.
T Consensus 279 p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNp-- 352 (923)
T KOG0387|consen 279 P--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNP-- 352 (923)
T ss_pred c--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCC--
Confidence 4 56777777655420 000 11122467999998655422 23344456899999999998876
Q ss_pred hHHHHHHHhhcCCCCceEEeeccc-cHHHHHH------------------------------------------------
Q psy17912 293 EPQIRKIIGQIRPDRQVLMWSATW-PKEVQKL------------------------------------------------ 323 (779)
Q Consensus 293 ~~~l~~il~~l~~~~qilllSAT~-~~~v~~l------------------------------------------------ 323 (779)
...+...++.++ ..+.+++|.|+ -+.+.++
T Consensus 353 ns~islackki~-T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~ 431 (923)
T KOG0387|consen 353 NSKISLACKKIR-TVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVA 431 (923)
T ss_pred ccHHHHHHHhcc-ccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHH
Confidence 334444444443 44555566662 1111111
Q ss_pred ----HHHhc-------------cCc--E--EEec----------------------CCCC---------C-CCcc-----
Q psy17912 324 ----AEDFL-------------VDY--V--QLNI----------------------GSLN---------P-TANH----- 345 (779)
Q Consensus 324 ----~~~~l-------------~~~--~--~i~i----------------------~~~~---------~-~~~~----- 345 (779)
+..|+ ... . .... +... . ....
T Consensus 432 Lr~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~ 511 (923)
T KOG0387|consen 432 LRDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDR 511 (923)
T ss_pred HHHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccC
Confidence 11110 000 0 0000 0000 0 0000
Q ss_pred ---ceEEEE---EeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHH-hCCCeEEEEcCCCCHHHHHHHH
Q psy17912 346 ---NIVQIV---DVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVR-NKGWAAVAIHGNKSQQERDRVL 418 (779)
Q Consensus 346 ---~i~~~~---~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~-~~g~~v~~ihg~~~~~eR~~il 418 (779)
...+.- .......|...+..++..... .+.++|+|.+++...+.|...|. ..++..+.+.|.++...|..++
T Consensus 512 ~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~k-qg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lV 590 (923)
T KOG0387|consen 512 RDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKK-QGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLV 590 (923)
T ss_pred cccccccCCCcCCChhhcchHHHHHHHHHHHhh-CCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHH
Confidence 000000 111233566777788877644 46799999999999999999999 5899999999999999999999
Q ss_pred HHHhcCCC--cEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC
Q psy17912 419 NEFRIGRA--SILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 419 ~~F~~G~~--~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g 479 (779)
+.|.+++. .+|++|.+.+-|+|+...+ .||.||+.+++..-.|..-||-|-|
T Consensus 591 d~Fne~~s~~VFLLTTrvGGLGlNLTgAn---------RVIIfDPdWNPStD~QAreRawRiG 644 (923)
T KOG0387|consen 591 DRFNEDESIFVFLLTTRVGGLGLNLTGAN---------RVIIFDPDWNPSTDNQARERAWRIG 644 (923)
T ss_pred HhhcCCCceEEEEEEecccccccccccCc---------eEEEECCCCCCccchHHHHHHHhhc
Confidence 99997764 4799999999999999988 9999999999988888888888877
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.66 E-value=2.6e-14 Score=171.99 Aligned_cols=276 Identities=16% Similarity=0.188 Sum_probs=170.8
Q ss_pred CCCHHHHHHHHHHh----cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHH-HHHHHHh
Q psy17912 150 APTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQI-ETVANDF 224 (779)
Q Consensus 150 ~p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~-~~~~~~~ 224 (779)
++++-|.+....+. +++.+++.|+||+|||++|++|++... .+.++||++||++|++|+ .+.+..+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 68999999665543 678899999999999999999988653 145799999999999999 4667777
Q ss_pred cccCCceEEEEeCCCCChh---------------h--------------------------------HHHh---------
Q psy17912 225 GSATATRVACVFGGAPKGP---------------Q--------------------------------VKAL--------- 248 (779)
Q Consensus 225 ~~~~~l~v~~~~gg~~~~~---------------~--------------------------------~~~l--------- 248 (779)
.+..++++..+.|+...-. . +..+
T Consensus 316 ~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 316 QEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred HHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 7666776666655432100 0 0000
Q ss_pred ---------------hcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC-----ch-------HHH-----
Q psy17912 249 ---------------QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG-----FE-------PQI----- 296 (779)
Q Consensus 249 ---------------~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~-----f~-------~~l----- 296 (779)
...++|+|+.-.-|+..+..+. .+...+++||||||++.+.. .. ..+
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 474 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLMLQLEQLSRHQLNITSFLQTIQKALS 474 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhHHHHHHHhcceecHHHHHHHHHHHHH
Confidence 1125899999877776654433 36788999999999876421 00 000
Q ss_pred --------------------------------------HH-------H-----------Hh--h----c-----------
Q psy17912 297 --------------------------------------RK-------I-----------IG--Q----I----------- 303 (779)
Q Consensus 297 --------------------------------------~~-------i-----------l~--~----l----------- 303 (779)
.. + +. . +
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~W~e~~~~~~~~~~ 554 (820)
T PRK07246 475 GPLPLLQKRLLESISFELLQLSEQFYQGKERQLIHDSLSRLHQYFSELEVAGFQELQAFFATAEGDYWLESEKQSEKRVT 554 (820)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCCCCccee
Confidence 00 0 00 0 0
Q ss_pred ----------------CCCCceEEeecccc--HHHHHHHHHhccC-cEEEecCCCCCCCccceEEEEE-eccc------c
Q psy17912 304 ----------------RPDRQVLMWSATWP--KEVQKLAEDFLVD-YVQLNIGSLNPTANHNIVQIVD-VCQE------H 357 (779)
Q Consensus 304 ----------------~~~~qilllSAT~~--~~v~~l~~~~l~~-~~~i~i~~~~~~~~~~i~~~~~-~~~~------~ 357 (779)
+....+|++|||++ +.. .+...+..+ .....+. .. ...+....+. ..+. .
T Consensus 555 ~l~~~pl~v~~~~~~~~~~~~~i~tSATL~v~~~f-~~~~~lGl~~~~~~~~~-~~--~~~~~~~~i~~~~p~~~~~~~~ 630 (820)
T PRK07246 555 YLNSASKAFTHFSQLLPETCKTYFVSATLQISPRV-SLADLLGFEEYLFHKIE-KD--KKQDQLVVVDQDMPLVTETSDE 630 (820)
T ss_pred EEEeeeCcHHHHHHHHhcCCeEEEEecccccCCCC-cHHHHcCCCccceecCC-CC--hHHccEEEeCCCCCCCCCCChH
Confidence 01135688888885 222 233322222 1111111 11 1111111110 0111 1
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q psy17912 358 EKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQ 437 (779)
Q Consensus 358 ~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~ 437 (779)
.-...+.+.+..+. ..++++||+++|.+..+.+++.|....+.+ ...|... .+..+++.|++++-.||++|..+.+
T Consensus 631 ~~~~~~~~~i~~~~-~~~g~~LVLFtS~~~l~~v~~~l~~~~~~~-l~Qg~~~--~~~~l~~~F~~~~~~vLlG~~sFwE 706 (820)
T PRK07246 631 VYAEEIAKRLEELK-QLQQPILVLFNSKKHLLAVSDLLDQWQVSH-LAQEKNG--TAYNIKKRFDRGEQQILLGLGSFWE 706 (820)
T ss_pred HHHHHHHHHHHHHH-hcCCCEEEEECcHHHHHHHHHHHhhcCCcE-EEeCCCc--cHHHHHHHHHcCCCeEEEecchhhC
Confidence 11224444444444 457899999999999999999997665555 4445322 2567899999988899999999999
Q ss_pred ccccCc
Q psy17912 438 QERDRV 443 (779)
Q Consensus 438 GIDip~ 443 (779)
|||+|.
T Consensus 707 GVD~p~ 712 (820)
T PRK07246 707 GVDFVQ 712 (820)
T ss_pred CCCCCC
Confidence 999974
No 131
>KOG1123|consensus
Probab=99.65 E-value=1.1e-15 Score=163.48 Aligned_cols=295 Identities=17% Similarity=0.174 Sum_probs=192.8
Q ss_pred CCCCHHHHHHHHHHhc-C--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 149 QAPTAIQAQGWPIALS-G--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~-g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
..++|+|..++..+.. | ++.||+.|.|+|||++-+-++. .+ ...||||+.+-..+.||...+..++
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~-ti----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAAC-TI----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeee-ee----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 4689999999999883 3 5789999999999976443322 11 2369999999999999999998887
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcC--------CcCCCCeeEEEEccchhhhcCCchHHHH
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQG--------TINLHRTSYLVLDEADRMLDMGFEPQIR 297 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~--------~~~l~~i~~lViDEaH~l~~~~f~~~l~ 297 (779)
.-..-.++.++.+... ....++.|+|+|+.++..--.+. -+.-+.++++|+||+|.+...-|+..+.
T Consensus 370 ti~d~~i~rFTsd~Ke-----~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~MFRRVls 444 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAKE-----RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAKMFRRVLS 444 (776)
T ss_pred ccCccceEEeeccccc-----cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHHHHHHHHH
Confidence 5555555555554332 12356889999986664321110 1234578999999999988776776555
Q ss_pred HHHhhcCCCCceEEeeccccHHHHHHHH-HhccCcEEEecCCCCCCCc---cceE-----------------------EE
Q psy17912 298 KIIGQIRPDRQVLMWSATWPKEVQKLAE-DFLVDYVQLNIGSLNPTAN---HNIV-----------------------QI 350 (779)
Q Consensus 298 ~il~~l~~~~qilllSAT~~~~v~~l~~-~~l~~~~~i~i~~~~~~~~---~~i~-----------------------~~ 350 (779)
-+-.++ .+++|||+-.+-.++.. .|+..|......=.+.... ..++ ..
T Consensus 445 iv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~ 519 (776)
T KOG1123|consen 445 IVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRM 519 (776)
T ss_pred HHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhh
Confidence 555555 68899997433222111 1111111000000000000 0111 11
Q ss_pred EEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEE
Q psy17912 351 VDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRI-GRASIL 429 (779)
Q Consensus 351 ~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~-G~~~IL 429 (779)
..++-...|.....-|++.. ...+.++|||..+.-.....|-.|.+ -+|+|.+++.||.+|++.|+. ..++.+
T Consensus 520 lLyvMNP~KFraCqfLI~~H-E~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq~n~~vNTI 593 (776)
T KOG1123|consen 520 LLYVMNPNKFRACQFLIKFH-ERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQTNPKVNTI 593 (776)
T ss_pred eeeecCcchhHHHHHHHHHH-HhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcccCCccceE
Confidence 12222334555555555544 44789999999887776666655533 378999999999999999985 467888
Q ss_pred EEecccccccccCcccccccccceeEEEEcC-CCCCHHHHHHHhccCCCCC
Q psy17912 430 VSQYNKSQQERDRVLNEFRIGRASILVSQYK-ESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 430 VAT~v~~~GIDip~v~~~~~~~~~~~VI~y~-~p~s~~~yiQR~GRaGR~g 479 (779)
+-..+....+|+|..+ +.|... .--+-.+=.||.||.-|+.
T Consensus 594 FlSKVgDtSiDLPEAn---------vLIQISSH~GSRRQEAQRLGRILRAK 635 (776)
T KOG1123|consen 594 FLSKVGDTSIDLPEAN---------VLIQISSHGGSRRQEAQRLGRILRAK 635 (776)
T ss_pred EEeeccCccccCCccc---------EEEEEcccccchHHHHHHHHHHHHHh
Confidence 8899999999999988 555543 2345677789999888875
No 132
>COG4889 Predicted helicase [General function prediction only]
Probab=99.64 E-value=6.7e-16 Score=173.69 Aligned_cols=330 Identities=16% Similarity=0.131 Sum_probs=198.1
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHhcCC----CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHH
Q psy17912 137 PYIMKKIYEMGFQAPTAIQAQGWPIALSGC----DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRE 212 (779)
Q Consensus 137 ~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~----dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~ 212 (779)
.++..++.-..-.+|+|+|++|+..+..+- ..=+.+.+|+|||++.+-- ...+.. .++|+|+|+.+
T Consensus 148 ~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLki-sEala~---------~~iL~LvPSIs 217 (1518)
T COG4889 148 TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKI-SEALAA---------ARILFLVPSIS 217 (1518)
T ss_pred cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHH-HHHHhh---------hheEeecchHH
Confidence 345555555566789999999999988552 1234456899999776543 223322 37999999999
Q ss_pred HHHHHHHHHHHhcccCCceEEEEeCCCCChhhH-------------------------HHhhcCCeEEEeChHHHHHHHH
Q psy17912 213 LAQQIETVANDFGSATATRVACVFGGAPKGPQV-------------------------KALQTGAEIVIATPGRLIDYLE 267 (779)
Q Consensus 213 La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~-------------------------~~l~~~~~IiV~Tpe~Ll~~l~ 267 (779)
|..|..+++..-. .+.++...++++....... +.-..+--|+++|++.+...-.
T Consensus 218 LLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~e 296 (1518)
T COG4889 218 LLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKE 296 (1518)
T ss_pred HHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHH
Confidence 9999887775542 3455555555543221100 1111245699999999987766
Q ss_pred cCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcC-----CCCceEEeecccc---HHHHHHH---------------
Q psy17912 268 QGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIR-----PDRQVLMWSATWP---KEVQKLA--------------- 324 (779)
Q Consensus 268 ~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~-----~~~qilllSAT~~---~~v~~l~--------------- 324 (779)
....-+..+++||+||||+-........=...+..+. +..+.+.||||.. ...+.-+
T Consensus 297 AQe~G~~~fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~ 376 (1518)
T COG4889 297 AQEAGLDEFDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELT 376 (1518)
T ss_pred HHHcCCCCccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhh
Confidence 5556688999999999998654322111111111111 2345677888841 1111111
Q ss_pred ---------------HHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHH---HHhccC-------------
Q psy17912 325 ---------------EDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLL---SQIGSE------------- 373 (779)
Q Consensus 325 ---------------~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll---~~i~~~------------- 373 (779)
+.++.++..+............+.+........-..+....++ .-+...
T Consensus 377 fGeef~rl~FgeAv~rdlLTDYKVmvlaVd~~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d 456 (1518)
T COG4889 377 FGEEFHRLGFGEAVERDLLTDYKVMVLAVDKEVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKAD 456 (1518)
T ss_pred hchhhhcccHHHHHHhhhhccceEEEEEechhhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCC
Confidence 1122222222221111111111111111111111111111111 111110
Q ss_pred --CCCcEEEEecchhHHHHHHHHHHh-------------C--CCeEEEEcCCCCHHHHHHHHH---HHhcCCCcEEEEec
Q psy17912 374 --RTSKTIIFVETKRKADDITRSVRN-------------K--GWAAVAIHGNKSQQERDRVLN---EFRIGRASILVSQY 433 (779)
Q Consensus 374 --~~~kvLVF~~s~~~ae~L~~~L~~-------------~--g~~v~~ihg~~~~~eR~~il~---~F~~G~~~ILVAT~ 433 (779)
+..+.|-||.+.++...+++.+.. . .+.+.++.|.|...+|...+. .|...+++||-...
T Consensus 457 ~ap~~RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaR 536 (1518)
T COG4889 457 TAPMQRAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNAR 536 (1518)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccch
Confidence 224679999999998888877652 1 244566779999999966554 34678999999999
Q ss_pred ccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC---CeEEEEE
Q psy17912 434 NKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS---ILVSHYN 486 (779)
Q Consensus 434 v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g---~~~~~~~ 486 (779)
.+++|+|+|.++ -||.|++-+++.+.+|-.||+.|.. ..|+++.
T Consensus 537 cLSEGVDVPaLD---------sViFf~pr~smVDIVQaVGRVMRKa~gK~yGYIIL 583 (1518)
T COG4889 537 CLSEGVDVPALD---------SVIFFDPRSSMVDIVQAVGRVMRKAKGKKYGYIIL 583 (1518)
T ss_pred hhhcCCCccccc---------eEEEecCchhHHHHHHHHHHHHHhCcCCccceEEE
Confidence 999999999998 9999999999999999999999964 3444443
No 133
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.63 E-value=3.5e-14 Score=165.40 Aligned_cols=275 Identities=16% Similarity=0.142 Sum_probs=175.2
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 229 (779)
.|++.|.-+.-.+ .+.-|+.+.||.|||+++.+|++..... |..|-||+++..||.+-++++..+...+|
T Consensus 76 r~ydvQlig~l~L--~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 76 RHFDVQLIGGLVL--NDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCCchHhhhhHhh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 4777777765444 4457999999999999999999765554 45689999999999999999999999999
Q ss_pred ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHH-HHHHcCC------cCCCCeeEEEEccchhhhc-CC----------
Q psy17912 230 TRVACVFGGAPKGPQVKALQTGAEIVIATPGRLI-DYLEQGT------INLHRTSYLVLDEADRMLD-MG---------- 291 (779)
Q Consensus 230 l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll-~~l~~~~------~~l~~i~~lViDEaH~l~~-~~---------- 291 (779)
+.++++.++.+..+... .-.+||+++|..-|- ++|..+. ...+.+.+.||||+|.++- ..
T Consensus 146 Lsvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLIDeArTPLiISg~~ 223 (870)
T CHL00122 146 LTVGLIQEGMSSEERKK--NYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILIDEARTPLIISGQS 223 (870)
T ss_pred CceeeeCCCCChHHHHH--hcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhheeccCCCceeccCCC
Confidence 99999988766644322 334799999986553 4443321 2356789999999996652 11
Q ss_pred -----chHHHHHHHhhcCCC------------------------------------------------------------
Q psy17912 292 -----FEPQIRKIIGQIRPD------------------------------------------------------------ 306 (779)
Q Consensus 292 -----f~~~l~~il~~l~~~------------------------------------------------------------ 306 (779)
.......+...+..+
T Consensus 224 ~~~~~~y~~~~~~v~~L~~~~dy~vdek~k~v~LTe~G~~~~e~~l~i~~ly~~~~~~~~~i~~AL~A~~lf~~d~dYiV 303 (870)
T CHL00122 224 KTNIDKYIVADELAKYLEKNVHYEVDEKNKNVILTEQGILFIEKILKIEDLYSANDPWIPYILNALKAKELFFKNVHYIV 303 (870)
T ss_pred ccchHHHHHHHHHHHhcCcCCCeEEEcCCCceEecHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 000111111111100
Q ss_pred --------------------------------------------------------CceEEeeccccHHHHHHHHHhccC
Q psy17912 307 --------------------------------------------------------RQVLMWSATWPKEVQKLAEDFLVD 330 (779)
Q Consensus 307 --------------------------------------------------------~qilllSAT~~~~v~~l~~~~l~~ 330 (779)
.++.+||.|+..+-.++...|..+
T Consensus 304 ~dgeV~iVDe~TGR~m~grrws~GLHQaiEaKEgv~It~e~~tlAsIT~QnfFr~Y~kL~GMTGTa~te~~Ef~~iY~l~ 383 (870)
T CHL00122 304 RNNEIIIVDEFTGRIMPGRRWSDGLHQAIEAKENLPIRQETETLASITYQNFFLLYPKLSGMTGTAKTEELEFEKIYNLE 383 (870)
T ss_pred ECCEEEEEECCCCcCCCCCccchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHHhCchhcccCCCCHHHHHHHHHHhCCC
Confidence 234455555544434444433333
Q ss_pred cEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCC
Q psy17912 331 YVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKS 410 (779)
Q Consensus 331 ~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~ 410 (779)
.+.+ +...+....... ...+.....|...+.+-+... ...+.||||-|.|.+..+.|+..|.+.|++.-++++.-.
T Consensus 384 vv~I--Ptnkp~~R~d~~-d~v~~t~~~K~~AI~~ei~~~-~~~grPVLIgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~ 459 (870)
T CHL00122 384 VVCI--PTHRPMLRKDLP-DLIYKDELSKWRAIADECLQM-HQTGRPILIGTTTIEKSELLSQLLKEYRLPHQLLNAKPE 459 (870)
T ss_pred EEEC--CCCCCccceeCC-CeEEeCHHHHHHHHHHHHHHH-HhcCCCEEEeeCCHHHHHHHHHHHHHcCCccceeeCCCc
Confidence 3222 111111111111 112233334555444444443 346899999999999999999999999999999999642
Q ss_pred HHHH-HHHHHHHhcC-CCcEEEEecccccccccC
Q psy17912 411 QQER-DRVLNEFRIG-RASILVSQYNKSQQERDR 442 (779)
Q Consensus 411 ~~eR-~~il~~F~~G-~~~ILVAT~v~~~GIDip 442 (779)
..++ .+|+.. .| .-.|-|||++|+||.|+.
T Consensus 460 ~~~~EA~IIA~--AG~~G~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 460 NVRRESEIVAQ--AGRKGSITIATNMAGRGTDII 491 (870)
T ss_pred cchhHHHHHHh--cCCCCcEEEeccccCCCcCee
Confidence 2222 223322 34 357999999999999954
No 134
>KOG0390|consensus
Probab=99.62 E-value=8.1e-14 Score=161.05 Aligned_cols=320 Identities=16% Similarity=0.169 Sum_probs=203.2
Q ss_pred CCCHHHHHHHHHHhc---C-------CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHH
Q psy17912 150 APTAIQAQGWPIALS---G-------CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIET 219 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~---g-------~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~ 219 (779)
.++|+|++.+..+.. | ..+|+.-..|+|||+..+..+...+...|.... --.++|||+|. .|+.-|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~-~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKP-LINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccc-cccccEEEccH-HHHHHHHH
Confidence 578999999987652 2 247788889999998877766666665442111 12468999996 67788888
Q ss_pred HHHHhcccCCceEEEEeCCCCC-h-hhHHHh-----hcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCc
Q psy17912 220 VANDFGSATATRVACVFGGAPK-G-PQVKAL-----QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGF 292 (779)
Q Consensus 220 ~~~~~~~~~~l~v~~~~gg~~~-~-~~~~~l-----~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f 292 (779)
+|.+......+....+++.... . .....+ .-...|++.+++.+.+.+. .+....+++||+||.|++-..
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrlkN~-- 391 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRLKNS-- 391 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCccch--
Confidence 8888766545666667776653 0 000011 1124789999999876653 244678899999999987664
Q ss_pred hHHHHHHHhhcCCCCceEEeeccc-cHH---------------------------------------------------H
Q psy17912 293 EPQIRKIIGQIRPDRQVLMWSATW-PKE---------------------------------------------------V 320 (779)
Q Consensus 293 ~~~l~~il~~l~~~~qilllSAT~-~~~---------------------------------------------------v 320 (779)
...+.+.|..+. -.+.|++|.|+ -++ +
T Consensus 392 ~s~~~kaL~~l~-t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~~~~~~rl~eL 470 (776)
T KOG0390|consen 392 DSLTLKALSSLK-TPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEEDREREERLQEL 470 (776)
T ss_pred hhHHHHHHHhcC-CCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhhhhhHHHHHHH
Confidence 334555555553 34566678882 000 1
Q ss_pred HHHHHHhccCc------------EE-Eec-CCCC----------CC--------------------Ccc-ceEE------
Q psy17912 321 QKLAEDFLVDY------------VQ-LNI-GSLN----------PT--------------------ANH-NIVQ------ 349 (779)
Q Consensus 321 ~~l~~~~l~~~------------~~-i~i-~~~~----------~~--------------------~~~-~i~~------ 349 (779)
..+...|+... .. +.+ .... .. .++ .+..
T Consensus 471 ~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP~L~~~~~~~~ 550 (776)
T KOG0390|consen 471 RELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHPSLLLLCEKTE 550 (776)
T ss_pred HHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCHHhhccccccc
Confidence 11122221100 00 000 0000 00 000 0000
Q ss_pred -------------E------EEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCC
Q psy17912 350 -------------I------VDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKS 410 (779)
Q Consensus 350 -------------~------~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~ 410 (779)
. ..-.....+...|..++..+......++.+..|.+...+.+.+.++..|+.++.+||.|+
T Consensus 551 ~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~~~~rLdG~~~ 630 (776)
T KOG0390|consen 551 KEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGYEVLRLDGKTS 630 (776)
T ss_pred ccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCceEEEEcCCCc
Confidence 0 000001123344555554443333444555556677777777777778999999999999
Q ss_pred HHHHHHHHHHHhcCC---CcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEE
Q psy17912 411 QQERDRVLNEFRIGR---ASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHY 485 (779)
Q Consensus 411 ~~eR~~il~~F~~G~---~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~ 485 (779)
..+|..+++.|.+.. .-+|.+|.+.+.||++-+.+ .+|.||.+++++.=.|.+.||-|.|..-.+|
T Consensus 631 ~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAs---------Rlil~D~dWNPa~d~QAmaR~~RdGQKk~v~ 699 (776)
T KOG0390|consen 631 IKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGAS---------RLILFDPDWNPAVDQQAMARAWRDGQKKPVY 699 (776)
T ss_pred hHHHHHHHHhccCCCCCceEEEEecccccCceeecccc---------eEEEeCCCCCchhHHHHHHHhccCCCcceEE
Confidence 999999999998643 44788889999999998887 8999999999999999999999999554333
No 135
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.62 E-value=1.2e-14 Score=136.49 Aligned_cols=144 Identities=42% Similarity=0.573 Sum_probs=112.2
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQV 245 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~ 245 (779)
+++++.+|||+|||.+++..+....... ..++++|++|+..++.|+.+.+...... ...+..+.+........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~------~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL------KGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc------cCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 4789999999999999888887766541 2458999999999999999988887765 67777777776665555
Q ss_pred HHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccc
Q psy17912 246 KALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 246 ~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~ 316 (779)
.......+|+++|++.+...+.........+++|||||+|.+....+...............+++++|||+
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 55566789999999999988876655567789999999999887655443322334445678999999995
No 136
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.61 E-value=9.5e-15 Score=136.65 Aligned_cols=118 Identities=27% Similarity=0.334 Sum_probs=106.8
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc
Q psy17912 358 EKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQ 437 (779)
Q Consensus 358 ~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~ 437 (779)
.|...+..++..... .++++||||++...++.+++.|.+.+..+..+||+++..+|..+++.|+++..+||++|.++++
T Consensus 12 ~k~~~i~~~i~~~~~-~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~ 90 (131)
T cd00079 12 EKLEALLELLKEHLK-KGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIAR 90 (131)
T ss_pred HHHHHHHHHHHhccc-CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhc
Confidence 566677777776532 5789999999999999999999998899999999999999999999999999999999999999
Q ss_pred ccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEE
Q psy17912 438 QERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHY 485 (779)
Q Consensus 438 GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~ 485 (779)
|+|+|.++ .|+.++.|.+...++|++||++|.|..+.++
T Consensus 91 G~d~~~~~---------~vi~~~~~~~~~~~~Q~~GR~~R~~~~~~~~ 129 (131)
T cd00079 91 GIDLPNVS---------VVINYDLPWSPSSYLQRIGRAGRAGQKGTAI 129 (131)
T ss_pred CcChhhCC---------EEEEeCCCCCHHHheecccccccCCCCceEE
Confidence 99999988 8999999999999999999999999765544
No 137
>KOG0392|consensus
Probab=99.60 E-value=2.5e-14 Score=166.71 Aligned_cols=359 Identities=19% Similarity=0.219 Sum_probs=227.9
Q ss_pred CCHHHHHHHHHHh---c-CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCE-EEEEccCHHHHHHHHHHHHHhc
Q psy17912 151 PTAIQAQGWPIAL---S-GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPI-VLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 151 p~~~Q~~~i~~il---~-g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~-vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
++.||++.++++. + +-+.|+|...|-|||+..+--+..-....+.....-.+. .|||||. .|+--|..++.+|+
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 5789999998875 2 347899999999999986544433322221111111222 7999997 78888999999998
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCC
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRP 305 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~ 305 (779)
.. +++...+|....+...+.-.+..+|+|++++.+.+-+.. +.-.++.|+|+||-|-|.+. ...+.+.++.++.
T Consensus 1055 pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVikN~--ktkl~kavkqL~a 1128 (1549)
T KOG0392|consen 1055 PF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIKNS--KTKLTKAVKQLRA 1128 (1549)
T ss_pred ch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceecch--HHHHHHHHHHHhh
Confidence 76 666666776555544454455679999999877643321 12345789999999987664 5556666676655
Q ss_pred CCceEEeeccc---------------------------------------------------------------------
Q psy17912 306 DRQVLMWSATW--------------------------------------------------------------------- 316 (779)
Q Consensus 306 ~~qilllSAT~--------------------------------------------------------------------- 316 (779)
.. .+.+|.|.
T Consensus 1129 ~h-RLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske~EaG~lAleaLHKqVLPF~LRRl 1207 (1549)
T KOG0392|consen 1129 NH-RLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKEQEAGVLALEALHKQVLPFLLRRL 1207 (1549)
T ss_pred cc-eEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 44 44567771
Q ss_pred --------cHH------------HHHHHHHhccC---cEEEecCCCCCCCc---cceEE-------------EEEe----
Q psy17912 317 --------PKE------------VQKLAEDFLVD---YVQLNIGSLNPTAN---HNIVQ-------------IVDV---- 353 (779)
Q Consensus 317 --------~~~------------v~~l~~~~l~~---~~~i~i~~~~~~~~---~~i~~-------------~~~~---- 353 (779)
|+. .+++.+.|-.. .+...+.....+.. .++.| .+..
T Consensus 1208 KedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp 1287 (1549)
T KOG0392|consen 1208 KEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHP 1287 (1549)
T ss_pred HHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHHHHhcCCcceeeCCCcc
Confidence 000 00000111000 00000000000000 00000 0000
Q ss_pred ------------------ccccchhHHHHHHHHHhccC-------------CCCcEEEEecchhHHHHHHHHHHhCC-Ce
Q psy17912 354 ------------------CQEHEKDYKLQGLLSQIGSE-------------RTSKTIIFVETKRKADDITRSVRNKG-WA 401 (779)
Q Consensus 354 ------------------~~~~~k~~~L~~ll~~i~~~-------------~~~kvLVF~~s~~~ae~L~~~L~~~g-~~ 401 (779)
.....|...|.+++.+..-. ..+++||||+-+...+.+.+.|.+.- ..
T Consensus 1288 ~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mps 1367 (1549)
T KOG0392|consen 1288 DLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPS 1367 (1549)
T ss_pred hHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhcCc
Confidence 01123445555666543111 35789999999999999999887653 23
Q ss_pred --EEEEcCCCCHHHHHHHHHHHhcC-CCcE-EEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCC
Q psy17912 402 --AVAIHGNKSQQERDRVLNEFRIG-RASI-LVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGR 477 (779)
Q Consensus 402 --v~~ihg~~~~~eR~~il~~F~~G-~~~I-LVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR 477 (779)
...+.|..++.+|.++.++|.++ .++| |++|.+.+-|+|..+.+ -||.+...+++..-.|..-||-|
T Consensus 1368 VtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGAD---------TVVFvEHDWNPMrDLQAMDRAHR 1438 (1549)
T KOG0392|consen 1368 VTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGAD---------TVVFVEHDWNPMRDLQAMDRAHR 1438 (1549)
T ss_pred eeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCc---------eEEEEecCCCchhhHHHHHHHHh
Confidence 34789999999999999999998 6775 56778999999999888 78888888888888888888888
Q ss_pred CCCeE--EEEE----cChHHHHHHHHhhhccccceeeccccccH--HHHHHhhhhhc
Q psy17912 478 ASILV--SHYN----KSQQERDRVLNEFRIGRASILVSHYNKSQ--QERDRVLNEFR 526 (779)
Q Consensus 478 ~g~~~--~~~~----~~~~e~~~~l~e~~~~~~~il~~~~~~~~--~~~~~~l~~~~ 526 (779)
-|... .+|- ..-+|+---|++|...-+.-++++.|... ...+.+++.|.
T Consensus 1439 IGQKrvVNVyRlItrGTLEEKVMgLQkFKmnvAntvInqqNasl~tM~TdqLLdlF~ 1495 (1549)
T KOG0392|consen 1439 IGQKRVVNVYRLITRGTLEEKVMGLQKFKMNVANTVINQQNASLETMDTDQLLDLFT 1495 (1549)
T ss_pred hcCceeeeeeeehhcccHHHHHhhHHHHhhHHHHHHHhcccccccccCHHHHHHHhc
Confidence 88443 2222 23355566788888887777777766543 35666777664
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.60 E-value=3e-13 Score=157.29 Aligned_cols=127 Identities=23% Similarity=0.231 Sum_probs=98.6
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 229 (779)
.|+++|.-.--.+..| -|+.+.||-|||+++.+|++..... |..|-||+++.-||..=++++..+...+|
T Consensus 85 r~ydVQliGgl~Lh~G--~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~LG 154 (939)
T PRK12902 85 RHFDVQLIGGMVLHEG--QIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFLG 154 (939)
T ss_pred CcchhHHHhhhhhcCC--ceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHhC
Confidence 5677776666555444 5899999999999999999877665 45689999999999999999999999999
Q ss_pred ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-----HHHHHc--CCcCCCCeeEEEEccchhhh
Q psy17912 230 TRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-----IDYLEQ--GTINLHRTSYLVLDEADRML 288 (779)
Q Consensus 230 l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-----l~~l~~--~~~~l~~i~~lViDEaH~l~ 288 (779)
+.|+++.++.+..+ +.....+||+++|+..| .+.+.. +....+.+.+.||||+|.++
T Consensus 155 Ltvg~i~~~~~~~e--rr~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 155 LSVGLIQQDMSPEE--RKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CeEEEECCCCChHH--HHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 99999987665433 33344689999999887 333322 12345778999999999665
No 139
>KOG0389|consensus
Probab=99.60 E-value=4.2e-14 Score=159.10 Aligned_cols=307 Identities=16% Similarity=0.207 Sum_probs=201.8
Q ss_pred CCHHHHHHHHHHh----cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc
Q psy17912 151 PTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 151 p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 226 (779)
+.+||.-.++++. ++-+.|+..+.|.|||... ++.+..+... ...||. |||||...|-+ |..++.++|.
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQv-IaFlayLkq~----g~~gpH-LVVvPsSTleN-WlrEf~kwCP 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQV-IAFLAYLKQI----GNPGPH-LVVVPSSTLEN-WLREFAKWCP 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcchhHH-HHHHHHHHHc----CCCCCc-EEEecchhHHH-HHHHHHHhCC
Confidence 6799999999875 5567899999999999554 3334444432 124665 99999988766 6677888876
Q ss_pred cCCceEEEEeCCCCChhhHHHhh----cCCeEEEeChHHHHHHHH-cCCcCCCCeeEEEEccchhhhcCCchHHHHHHHh
Q psy17912 227 ATATRVACVFGGAPKGPQVKALQ----TGAEIVIATPGRLIDYLE-QGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIG 301 (779)
Q Consensus 227 ~~~l~v~~~~gg~~~~~~~~~l~----~~~~IiV~Tpe~Ll~~l~-~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~ 301 (779)
.++|...+|....+.+.+... .+++|+++|+.....--. +..+.-.+++++|+||+|.+.+..- ..+..++.
T Consensus 473 --sl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~S-eRy~~LM~ 549 (941)
T KOG0389|consen 473 --SLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTS-ERYKHLMS 549 (941)
T ss_pred --ceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccch-HHHHHhcc
Confidence 577888888876555544432 258999999854431100 0112345789999999998877642 23333333
Q ss_pred hcCCCCceEEeeccc-cHHHHHHH--------------------------------------------------------
Q psy17912 302 QIRPDRQVLMWSATW-PKEVQKLA-------------------------------------------------------- 324 (779)
Q Consensus 302 ~l~~~~qilllSAT~-~~~v~~l~-------------------------------------------------------- 324 (779)
. +....+++|.|. -+.+.+++
T Consensus 550 I--~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIsrAK~im~PFILRR 627 (941)
T KOG0389|consen 550 I--NANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERISRAKTIMKPFILRR 627 (941)
T ss_pred c--cccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHHHHHHHHhhhHHHHHH
Confidence 2 245567777771 00000000
Q ss_pred --HHhc---cCcE-EEec----------------------CCCCC---------------CCccceEEEEEe--------
Q psy17912 325 --EDFL---VDYV-QLNI----------------------GSLNP---------------TANHNIVQIVDV-------- 353 (779)
Q Consensus 325 --~~~l---~~~~-~i~i----------------------~~~~~---------------~~~~~i~~~~~~-------- 353 (779)
...+ +... .+.. ..... .+++.+.....+
T Consensus 628 ~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHPLL~R~~Y~de~L~~m 707 (941)
T KOG0389|consen 628 LKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHPLLFRSIYTDEKLRKM 707 (941)
T ss_pred HHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcChhHHHHhccHHHHHHH
Confidence 0000 0000 0000 00000 000000000000
Q ss_pred -------------------------------------------------ccccchhHHHHHHHHHhccCCCCcEEEEecc
Q psy17912 354 -------------------------------------------------CQEHEKDYKLQGLLSQIGSERTSKTIIFVET 384 (779)
Q Consensus 354 -------------------------------------------------~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s 384 (779)
.-...|...|..+|..+.. .+.+||||.+-
T Consensus 708 ak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~~k~-~G~RVLiFSQF 786 (941)
T KOG0389|consen 708 AKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPKIKK-KGDRVLIFSQF 786 (941)
T ss_pred HHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHHHhh-cCCEEEEeeHH
Confidence 0023466777888887744 46999999999
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCC--CcEEEEecccccccccCcccccccccceeEEEEcCCC
Q psy17912 385 KRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGR--ASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKES 462 (779)
Q Consensus 385 ~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~--~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p 462 (779)
....+.|...|...++....+.|.+.-.+|..+++.|...+ ..+|++|.+.+.|||+...+ .||.||..
T Consensus 787 TqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An---------~VIihD~d 857 (941)
T KOG0389|consen 787 TQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCAN---------TVIIHDID 857 (941)
T ss_pred HHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccc---------eEEEeecC
Confidence 99999999999999999999999999999999999998654 45899999999999999888 88999988
Q ss_pred CCHHHHHHHhccCCCCC
Q psy17912 463 QQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 463 ~s~~~yiQR~GRaGR~g 479 (779)
.++-.=.|.--||-|.|
T Consensus 858 FNP~dD~QAEDRcHRvG 874 (941)
T KOG0389|consen 858 FNPYDDKQAEDRCHRVG 874 (941)
T ss_pred CCCcccchhHHHHHhhC
Confidence 77776677666777766
No 140
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.60 E-value=3.5e-15 Score=127.04 Aligned_cols=78 Identities=23% Similarity=0.299 Sum_probs=75.3
Q ss_pred HHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHh
Q psy17912 393 RSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNE 472 (779)
Q Consensus 393 ~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~ 472 (779)
++|+..++.+..+||++++.+|..+++.|++++..|||||+++++|+|+|.++ +|+.|++|.++.+|.|++
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~---------~vi~~~~~~~~~~~~Q~~ 71 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDAS---------HVIFYDPPWSPEEYIQRI 71 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTES---------EEEESSSESSHHHHHHHH
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccc---------cccccccCCCHHHHHHHh
Confidence 46888999999999999999999999999999999999999999999999998 999999999999999999
Q ss_pred ccCCCCC
Q psy17912 473 FRIGRAS 479 (779)
Q Consensus 473 GRaGR~g 479 (779)
||++|.|
T Consensus 72 GR~~R~g 78 (78)
T PF00271_consen 72 GRAGRIG 78 (78)
T ss_dssp TTSSTTT
T ss_pred hcCCCCC
Confidence 9999986
No 141
>KOG0951|consensus
Probab=99.58 E-value=6.5e-14 Score=163.49 Aligned_cols=315 Identities=16% Similarity=0.148 Sum_probs=209.7
Q ss_pred CCCCCHHHHHHHHHHhc-CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHH-HHhc
Q psy17912 148 FQAPTAIQAQGWPIALS-GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVA-NDFG 225 (779)
Q Consensus 148 ~~~p~~~Q~~~i~~il~-g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~-~~~~ 225 (779)
|..+.|+|.++++.+.+ +.++++.+|+|||||.|+.++++. . ....++++++|.-+.+..++..+ ++|.
T Consensus 1141 f~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---~------~~~~~~vyi~p~~~i~~~~~~~w~~~f~ 1211 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---P------DTIGRAVYIAPLEEIADEQYRDWEKKFS 1211 (1674)
T ss_pred ccccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---C------ccceEEEEecchHHHHHHHHHHHHHhhc
Confidence 34458999999998874 567999999999999999888775 1 12448999999999998877655 5566
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC-----chHHHHHHH
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG-----FEPQIRKII 300 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~-----f~~~l~~il 300 (779)
...|..++.+.|..+.... .+ ...+|+|+||+++-.+ . ..+.+++.|.||+|.+.+.. ....++.|.
T Consensus 1212 ~~~G~~~~~l~ge~s~~lk--l~-~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia 1283 (1674)
T KOG0951|consen 1212 KLLGLRIVKLTGETSLDLK--LL-QKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIA 1283 (1674)
T ss_pred cccCceEEecCCccccchH--Hh-hhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHH
Confidence 6678888888888776433 22 3369999999998665 2 57889999999999887543 112377788
Q ss_pred hhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEE-EEEeccccch-----hHHHHHHHHHhccCC
Q psy17912 301 GQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQ-IVDVCQEHEK-----DYKLQGLLSQIGSER 374 (779)
Q Consensus 301 ~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~-~~~~~~~~~k-----~~~L~~ll~~i~~~~ 374 (779)
..+.+..+++++|..+.+. +.+ -.....-..+........+..+.- .+........ ...+..+... ...
T Consensus 1284 ~q~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~--a~~ 1358 (1674)
T KOG0951|consen 1284 SQLEKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRH--AGN 1358 (1674)
T ss_pred HHHHhheeEEEeehhhccc-hhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHH--hcC
Confidence 8888899999999887653 222 111111111222212122222211 1111111000 1112222222 235
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----------------------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNK----------------------GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQ 432 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~----------------------g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT 432 (779)
.++.+||+++++.|..++..|-.. ..+.++=|-+++..+..-+...|..|.+.|+|..
T Consensus 1359 ~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s 1438 (1674)
T KOG0951|consen 1359 RKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMS 1438 (1674)
T ss_pred CCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEE
Confidence 789999999999998887765321 1223333999999999999999999999999988
Q ss_pred cccccccccCcccccccccceeEEE---EcC------CCCCHHHHHHHhccCCCCCCeEEEEEcChHHHH
Q psy17912 433 YNKSQQERDRVLNEFRIGRASILVS---QYK------ESQQKRDRVLNEFRIGRASILVSHYNKSQQERD 493 (779)
Q Consensus 433 ~v~~~GIDip~v~~~~~~~~~~~VI---~y~------~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~ 493 (779)
.- ..|+-...- .++|. -|| .+-+..++.||.|+|.|+|.+..+.....++.+
T Consensus 1439 ~~-~~~~~~~~~--------lVvvmgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~~k~vi~~~~~~k~yy 1499 (1674)
T KOG0951|consen 1439 RD-CYGTKLKAH--------LVVVMGTQYYDGKEHSYEDYPIAELLQMVGLASGAGKCVIMCHTPKKEYY 1499 (1674)
T ss_pred cc-cccccccce--------EEEEecceeecccccccccCchhHHHHHhhhhcCCccEEEEecCchHHHH
Confidence 76 777753321 11111 122 456788999999999998887777666555443
No 142
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.57 E-value=9.2e-13 Score=161.44 Aligned_cols=83 Identities=11% Similarity=0.110 Sum_probs=63.0
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCC--eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGW--AAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQE 439 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~--~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GI 439 (779)
.+...+..+....++++|||++|.+..+.+++.|..... ....+--+++...|..+++.|+.++-.||++|..+.+||
T Consensus 739 ~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~~~~iLlG~~sFwEGV 818 (928)
T PRK08074 739 EVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQFDKAILLGTSSFWEGI 818 (928)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhcCCeEEEecCcccCcc
Confidence 344444444444678999999999999999999976422 122333455556789999999998889999999999999
Q ss_pred ccCcc
Q psy17912 440 RDRVL 444 (779)
Q Consensus 440 Dip~v 444 (779)
|+|+-
T Consensus 819 D~pg~ 823 (928)
T PRK08074 819 DIPGD 823 (928)
T ss_pred ccCCC
Confidence 99974
No 143
>KOG0953|consensus
Probab=99.55 E-value=2e-13 Score=148.48 Aligned_cols=275 Identities=15% Similarity=0.078 Sum_probs=173.9
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhh
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQ 244 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~ 244 (779)
.+-++-+|||.|||| .-+++++... ...++.-|.|.||.++++.+.+. |+.+-.++|...+...
T Consensus 191 RkIi~H~GPTNSGKT----y~ALqrl~~a--------ksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~ 254 (700)
T KOG0953|consen 191 RKIIMHVGPTNSGKT----YRALQRLKSA--------KSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVL 254 (700)
T ss_pred heEEEEeCCCCCchh----HHHHHHHhhh--------ccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecC
Confidence 345777899999999 5566666653 25799999999999999888876 6666666765443322
Q ss_pred HHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc-CCCCceEEeeccccHHHHHH
Q psy17912 245 VKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI-RPDRQVLMWSATWPKEVQKL 323 (779)
Q Consensus 245 ~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l-~~~~qilllSAT~~~~v~~l 323 (779)
.. ...+..+-||.|+.. .-..+++.||||++.|.+...+-.+.+.+.-+ .....+.+ .+.+..+
T Consensus 255 ~~--~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCG-----epsvldl 319 (700)
T KOG0953|consen 255 DN--GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCG-----EPSVLDL 319 (700)
T ss_pred CC--CCcccceEEEEEEee--------cCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccC-----CchHHHH
Confidence 11 122567777764321 12357899999999999877555555443322 11122211 1233344
Q ss_pred HHHhcc---CcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCC
Q psy17912 324 AEDFLV---DYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGW 400 (779)
Q Consensus 324 ~~~~l~---~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~ 400 (779)
+++.+. +.+.+.. +.... +......++..+.+-..+-+|| |-|++..-.+...+.+.+.
T Consensus 320 V~~i~k~TGd~vev~~--------------YeRl~---pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~ 381 (700)
T KOG0953|consen 320 VRKILKMTGDDVEVRE--------------YERLS---PLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGN 381 (700)
T ss_pred HHHHHhhcCCeeEEEe--------------ecccC---cceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcC
Confidence 444432 2222211 11111 1111122333333323444444 3468899999999998876
Q ss_pred e-EEEEcCCCCHHHHHHHHHHHhc--CCCcEEEEecccccccccCcccccccccceeEEEEcCC---------CCCHHHH
Q psy17912 401 A-AVAIHGNKSQQERDRVLNEFRI--GRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKE---------SQQKRDR 468 (779)
Q Consensus 401 ~-v~~ihg~~~~~eR~~il~~F~~--G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~---------p~s~~~y 468 (779)
. +++|+|+++++.|..--..|.+ ++++|||||+++++|+|+.. + .||.|+. |-+..+.
T Consensus 382 ~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~I-r---------RiiF~sl~Kysg~e~~~it~sqi 451 (700)
T KOG0953|consen 382 HKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLNI-R---------RIIFYSLIKYSGRETEDITVSQI 451 (700)
T ss_pred cceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccce-e---------EEEEeecccCCcccceeccHHHH
Confidence 5 9999999999999999999986 89999999999999999643 2 4454442 4567888
Q ss_pred HHHhccCCCCC---CeEEEEEcChHHHHHHHHhh
Q psy17912 469 VLNEFRIGRAS---ILVSHYNKSQQERDRVLNEF 499 (779)
Q Consensus 469 iQR~GRaGR~g---~~~~~~~~~~~e~~~~l~e~ 499 (779)
.|-+|||||.| ..|.+..+. .|....+.+.
T Consensus 452 kQIAGRAGRf~s~~~~G~vTtl~-~eDL~~L~~~ 484 (700)
T KOG0953|consen 452 KQIAGRAGRFGSKYPQGEVTTLH-SEDLKLLKRI 484 (700)
T ss_pred HHHhhcccccccCCcCceEEEee-HhhHHHHHHH
Confidence 99999999987 234444443 3445555443
No 144
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.54 E-value=3.7e-12 Score=147.30 Aligned_cols=96 Identities=10% Similarity=-0.055 Sum_probs=64.9
Q ss_pred HHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc----CCCcEEEEecccccccc
Q psy17912 365 GLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRI----GRASILVSQYNKSQQER 440 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~----G~~~ILVAT~v~~~GID 440 (779)
+.+..+.....+.+||.+.|.+..+.+++.|...---...+.|..+ .+..+++.|+. |.-.||++|..+.+|||
T Consensus 460 ~~~~~~~~~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfweGvD 537 (636)
T TIGR03117 460 LSTAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWTGID 537 (636)
T ss_pred HHHHHHHHHcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCccccccc
Confidence 3333344446789999999999999999999764212345556443 45678888886 47899999999999999
Q ss_pred cCcccccc-cccceeEEEEcCCC
Q psy17912 441 DRVLNEFR-IGRASILVSQYKES 462 (779)
Q Consensus 441 ip~v~~~~-~~~~~~~VI~y~~p 462 (779)
+|.--... -+..+..||....|
T Consensus 538 v~~~~~~p~~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 538 LTHKPVSPDKDNLLTDLIITCAP 560 (636)
T ss_pred cCCccCCCCCCCcccEEEEEeCC
Confidence 93211111 23445577665555
No 145
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.54 E-value=8e-14 Score=138.33 Aligned_cols=152 Identities=20% Similarity=0.177 Sum_probs=102.6
Q ss_pred CCCHHHHHHHHHHhc-------CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q psy17912 150 APTAIQAQGWPIALS-------GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAN 222 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~-------g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 222 (779)
+|+++|.+++..+.. .+.+++.+|||||||.+++..+..... +++|++|+..|+.|+.+.+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-----------ceeEecCHHHHHHHHHHHHH
Confidence 578999999998883 689999999999999888765544332 69999999999999999997
Q ss_pred HhcccCCceEEE-----------EeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC-----------cCCCCeeEEE
Q psy17912 223 DFGSATATRVAC-----------VFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT-----------INLHRTSYLV 280 (779)
Q Consensus 223 ~~~~~~~l~v~~-----------~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~-----------~~l~~i~~lV 280 (779)
.+.......... ..................+++++|...|........ ......++||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 665432111100 011111111122223457899999999988765421 2244678999
Q ss_pred EccchhhhcCCchHHHHHHHhhcCCCCceEEeecccc
Q psy17912 281 LDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWP 317 (779)
Q Consensus 281 iDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~ 317 (779)
+||||++.... .+..++. .+...+|+||||++
T Consensus 152 ~DEaH~~~~~~---~~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSDS---SYREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHHH---HHHHHHH--SSCCEEEEEESS-S
T ss_pred EehhhhcCCHH---HHHHHHc--CCCCeEEEEEeCcc
Confidence 99999877532 1455555 56778999999975
No 146
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.47 E-value=1.8e-11 Score=135.11 Aligned_cols=266 Identities=19% Similarity=0.188 Sum_probs=181.5
Q ss_pred CCEEEEEccCHHHHHHHHHHHHHhcccC-------------Cce------EEEEeCCCCChhhHHHhhc-----------
Q psy17912 201 GPIVLVLAPTRELAQQIETVANDFGSAT-------------ATR------VACVFGGAPKGPQVKALQT----------- 250 (779)
Q Consensus 201 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~-------------~l~------v~~~~gg~~~~~~~~~l~~----------- 250 (779)
.|+||||+|+|..|.++.+.+-++.... ++. ...-.....++++...+..
T Consensus 37 RPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlGi 116 (442)
T PF06862_consen 37 RPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLGI 116 (442)
T ss_pred CceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEeE
Confidence 5899999999999999988887765441 100 0000011122233333322
Q ss_pred --------------CCeEEEeChHHHHHHHHc------CCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc---CC--
Q psy17912 251 --------------GAEIVIATPGRLIDYLEQ------GTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI---RP-- 305 (779)
Q Consensus 251 --------------~~~IiV~Tpe~Ll~~l~~------~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l---~~-- 305 (779)
.+|||||+|-.|...+.. ....|+++.++|+|.||.++.+.|. .+..++..+ |.
T Consensus 117 k~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~-Hv~~v~~~lN~~P~~~ 195 (442)
T PF06862_consen 117 KFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWE-HVLHVFEHLNLQPKKS 195 (442)
T ss_pred EEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHH-HHHHHHHHhccCCCCC
Confidence 369999999999888864 2235899999999999987766554 444444443 21
Q ss_pred -------------------CCceEEeeccccHHHHHHHHHhccCcE---EEecCCC----CCCCccceEEEEEecccc--
Q psy17912 306 -------------------DRQVLMWSATWPKEVQKLAEDFLVDYV---QLNIGSL----NPTANHNIVQIVDVCQEH-- 357 (779)
Q Consensus 306 -------------------~~qilllSAT~~~~v~~l~~~~l~~~~---~i~i~~~----~~~~~~~i~~~~~~~~~~-- 357 (779)
-+|+|++|+...+++..+....+.|.. .+..... -......+.|.+...+..
T Consensus 196 ~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~ 275 (442)
T PF06862_consen 196 HDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSP 275 (442)
T ss_pred CCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCc
Confidence 179999999999999999998776522 2211111 012233445554443221
Q ss_pred -----chhHHHH-HHHHHhc-cCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q psy17912 358 -----EKDYKLQ-GLLSQIG-SERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILV 430 (779)
Q Consensus 358 -----~k~~~L~-~ll~~i~-~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILV 430 (779)
.+...+. .++..+. ....+.+|||+||.-+-..|.++|++.++..+.+|-..++.+-.++-..|.+|+.+||+
T Consensus 276 ~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL 355 (442)
T PF06862_consen 276 ADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGRKPILL 355 (442)
T ss_pred chhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCCceEEE
Confidence 1222222 2444444 45678899999999999999999999999999999999999999999999999999999
Q ss_pred EecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhcc
Q psy17912 431 SQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFR 474 (779)
Q Consensus 431 AT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GR 474 (779)
.|.-+ +-.+.+.++.+ ..||.|++|..+.-|...+.-
T Consensus 356 ~TER~------HFfrRy~irGi-~~viFY~~P~~p~fY~El~n~ 392 (442)
T PF06862_consen 356 YTERF------HFFRRYRIRGI-RHVIFYGPPENPQFYSELLNM 392 (442)
T ss_pred EEhHH------hhhhhceecCC-cEEEEECCCCChhHHHHHHhh
Confidence 99744 22233344442 389999999999888655543
No 147
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.44 E-value=5.5e-12 Score=148.98 Aligned_cols=311 Identities=16% Similarity=0.149 Sum_probs=174.8
Q ss_pred CCHHHHHHHHHHhc----C----CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q psy17912 151 PTAIQAQGWPIALS----G----CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAN 222 (779)
Q Consensus 151 p~~~Q~~~i~~il~----g----~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 222 (779)
-+.+|-.|+..+.+ . -=+|-.|.||||||++=.-.|. .+.. ...|.+..|-.-.|.|-.|.-+.++
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImy-aLsd-----~~~g~RfsiALGLRTLTLQTGda~r 482 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMY-ALRD-----DKQGARFAIALGLRSLTLQTGHALK 482 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHH-HhCC-----CCCCceEEEEccccceeccchHHHH
Confidence 36789999988773 1 1256679999999976433222 2222 2346677777788888777766666
Q ss_pred HhcccCCceEEEEeCCCC-------------------------------------------ChhhHHHhhc--------C
Q psy17912 223 DFGSATATRVACVFGGAP-------------------------------------------KGPQVKALQT--------G 251 (779)
Q Consensus 223 ~~~~~~~l~v~~~~gg~~-------------------------------------------~~~~~~~l~~--------~ 251 (779)
+-..-..-...++.|+.. .......+.+ .
T Consensus 483 ~rL~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~ 562 (1110)
T TIGR02562 483 TRLNLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLA 562 (1110)
T ss_pred HhcCCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhc
Confidence 543222222233333210 0000000100 1
Q ss_pred CeEEEeChHHHHHHHHc--C-CcCCC--C--eeEEEEccchhhhcCCchHHHHHHHhhc-CCCCceEEeeccccHHHHHH
Q psy17912 252 AEIVIATPGRLIDYLEQ--G-TINLH--R--TSYLVLDEADRMLDMGFEPQIRKIIGQI-RPDRQVLMWSATWPKEVQKL 323 (779)
Q Consensus 252 ~~IiV~Tpe~Ll~~l~~--~-~~~l~--~--i~~lViDEaH~l~~~~f~~~l~~il~~l-~~~~qilllSAT~~~~v~~l 323 (779)
.+|+|||+..++..... . ...+. . =+.|||||+|..-...+ ..+..++.-. ....++++||||+|+.+...
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~-~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~ 641 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDL-PALLRLVQLAGLLGSRVLLSSATLPPALVKT 641 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHH-HHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 58999999999877632 1 11111 1 26799999997433211 2233333321 23788999999999987654
Q ss_pred HH-Hhc----------c---CcEEE---ecCCCCCCCc----------------------------cceEEEEEeccccc
Q psy17912 324 AE-DFL----------V---DYVQL---NIGSLNPTAN----------------------------HNIVQIVDVCQEHE 358 (779)
Q Consensus 324 ~~-~~l----------~---~~~~i---~i~~~~~~~~----------------------------~~i~~~~~~~~~~~ 358 (779)
+. .|. . .++.+ .++....... ...-.++.......
T Consensus 642 L~~Ay~~G~~~~q~~~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~~~~~~~ 721 (1110)
T TIGR02562 642 LFRAYEAGRQMYQALYGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLSLSSLPR 721 (1110)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEeecCCccc
Confidence 33 221 1 11111 1111110000 00001111111110
Q ss_pred ----hhHHHHHHH-HH---h----c--cC-CCCc---EEEEecchhHHHHHHHHHHhC------CCeEEEEcCCCCHHHH
Q psy17912 359 ----KDYKLQGLL-SQ---I----G--SE-RTSK---TIIFVETKRKADDITRSVRNK------GWAAVAIHGNKSQQER 414 (779)
Q Consensus 359 ----k~~~L~~ll-~~---i----~--~~-~~~k---vLVF~~s~~~ae~L~~~L~~~------g~~v~~ihg~~~~~eR 414 (779)
....+...+ +. + . .. .+++ .||-+.+.+.+..++..|... .+.+++||+..+...|
T Consensus 722 ~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~R 801 (1110)
T TIGR02562 722 ENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLR 801 (1110)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHH
Confidence 111121111 11 1 0 00 1222 477788888888888888754 2457899999988888
Q ss_pred HHHHHHH----------------------hc----CCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHH
Q psy17912 415 DRVLNEF----------------------RI----GRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDR 468 (779)
Q Consensus 415 ~~il~~F----------------------~~----G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~y 468 (779)
..+++.. .+ +...|+|||.++|.|+|+. +-+.|..|.++.+.
T Consensus 802 s~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d------------fd~~~~~~~~~~sl 869 (1110)
T TIGR02562 802 SYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD------------YDWAIADPSSMRSI 869 (1110)
T ss_pred HHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc------------CCeeeeccCcHHHH
Confidence 7766553 11 4678999999999999954 33456678999999
Q ss_pred HHHhccCCCCCC
Q psy17912 469 VLNEFRIGRASI 480 (779)
Q Consensus 469 iQR~GRaGR~g~ 480 (779)
+|++||+.|.+.
T Consensus 870 iQ~aGR~~R~~~ 881 (1110)
T TIGR02562 870 IQLAGRVNRHRL 881 (1110)
T ss_pred HHHhhccccccc
Confidence 999999999874
No 148
>KOG1000|consensus
Probab=99.42 E-value=3.8e-11 Score=129.21 Aligned_cols=304 Identities=15% Similarity=0.148 Sum_probs=187.9
Q ss_pred CCCCHHHHHHHHHHh-cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhccc
Q psy17912 149 QAPTAIQAQGWPIAL-SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSA 227 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il-~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 227 (779)
..+-|+|.+.+...+ .|-.+++....|.|||+.++.-+..+... . -.||+||. ++-..|.+.+.++...
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyraE--------w-plliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRAE--------W-PLLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhhc--------C-cEEEEecH-HHhHHHHHHHHHhccc
Confidence 346799999998766 56789999999999998876555444332 2 36899997 4555678888887654
Q ss_pred CCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCC
Q psy17912 228 TATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDR 307 (779)
Q Consensus 228 ~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~ 307 (779)
..- +.++.++.+... .+.....|.|.+++.+..+- +.+.-..+.+||+||.|.+.+.- ......++..+....
T Consensus 267 ~~p-i~vv~~~~D~~~---~~~t~~~v~ivSye~ls~l~--~~l~~~~~~vvI~DEsH~Lk~sk-tkr~Ka~~dllk~ak 339 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDPLP---DVCTSNTVAIVSYEQLSLLH--DILKKEKYRVVIFDESHMLKDSK-TKRTKAATDLLKVAK 339 (689)
T ss_pred ccc-eEEEecccCCcc---ccccCCeEEEEEHHHHHHHH--HHHhcccceEEEEechhhhhccc-hhhhhhhhhHHHHhh
Confidence 332 444555444321 12233579999998876543 23334568999999999876642 223444455555567
Q ss_pred ceEEeeccc----cHH---------------HHHHHHHhccC-cEEEecCCCCCC-------------------------
Q psy17912 308 QVLMWSATW----PKE---------------VQKLAEDFLVD-YVQLNIGSLNPT------------------------- 342 (779)
Q Consensus 308 qilllSAT~----~~~---------------v~~l~~~~l~~-~~~i~i~~~~~~------------------------- 342 (779)
.+|++|.|. |.+ .-++...|+.. .+....+....+
T Consensus 340 hvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~q 419 (689)
T KOG1000|consen 340 HVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQ 419 (689)
T ss_pred heEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 799999994 222 12233333211 111111100000
Q ss_pred CccceEEEEEecccc--------------------------------------chhHHHHHHHHH---hccCCCCcEEEE
Q psy17912 343 ANHNIVQIVDVCQEH--------------------------------------EKDYKLQGLLSQ---IGSERTSKTIIF 381 (779)
Q Consensus 343 ~~~~i~~~~~~~~~~--------------------------------------~k~~~L~~ll~~---i~~~~~~kvLVF 381 (779)
.+.. .+.+.+.... .|...+.+.+.. +...+..+.+||
T Consensus 420 LPpK-rr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 420 LPPK-RREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred CCcc-ceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 0000 1111111100 011111111111 123467899999
Q ss_pred ecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEecccccccccCcccccccccceeEEEEc
Q psy17912 382 VETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIG-RAS-ILVSQYNKSQQERDRVLNEFRIGRASILVSQY 459 (779)
Q Consensus 382 ~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G-~~~-ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y 459 (779)
|.-....+.+..++.+.++....|.|.++..+|....+.|+.. +++ -+++-.+++.|+++...+ .|+..
T Consensus 499 aHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~---------~VVFa 569 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAAS---------VVVFA 569 (689)
T ss_pred ehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccc---------eEEEE
Confidence 9999999999999999999999999999999999999999854 444 466777899999987766 66666
Q ss_pred CCCCCHHHHHHHhccCCCCC
Q psy17912 460 KESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 460 ~~p~s~~~yiQR~GRaGR~g 479 (779)
..++++--++|.--|+-|.|
T Consensus 570 EL~wnPgvLlQAEDRaHRiG 589 (689)
T KOG1000|consen 570 ELHWNPGVLLQAEDRAHRIG 589 (689)
T ss_pred EecCCCceEEechhhhhhcc
Confidence 66666655555444444444
No 149
>KOG2340|consensus
Probab=99.42 E-value=4.2e-12 Score=137.53 Aligned_cols=323 Identities=19% Similarity=0.204 Sum_probs=212.2
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccC-CCCh--hHHHHHHHHHHHhccCCC--------C-C--------------CCCC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKT-GSGK--TLGYIAPAIVHVNSQRPL--------R-S--------------GEGP 202 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apT-GsGK--Tl~~~lp~l~~l~~~~~~--------~-~--------------~~~~ 202 (779)
..+|+.|.+.+..+.+.+|++..-.| +.|+ +-.|++.+++|+.+.+.. . . -..|
T Consensus 215 ~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRp 294 (698)
T KOG2340|consen 215 EPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRP 294 (698)
T ss_pred CcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCc
Confidence 46799999999999999998764222 3344 557999999998764211 0 0 1248
Q ss_pred EEEEEccCHHHHHHHHHHHHHhcccCCc---------eEEEEeCC--------CCChhhHHHh-----------------
Q psy17912 203 IVLVLAPTRELAQQIETVANDFGSATAT---------RVACVFGG--------APKGPQVKAL----------------- 248 (779)
Q Consensus 203 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l---------~v~~~~gg--------~~~~~~~~~l----------------- 248 (779)
+||||||+|+-|-.+...+..+.....- +...-+++ .+++++.+.+
T Consensus 295 kVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftk 374 (698)
T KOG2340|consen 295 KVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTK 374 (698)
T ss_pred eEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHH
Confidence 9999999999999999888777332211 01111221 1111221111
Q ss_pred --------hcCCeEEEeChHHHHHHHHcCC------cCCCCeeEEEEccchhhhcCCchHHHHHHHhhcC---C------
Q psy17912 249 --------QTGAEIVIATPGRLIDYLEQGT------INLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIR---P------ 305 (779)
Q Consensus 249 --------~~~~~IiV~Tpe~Ll~~l~~~~------~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~---~------ 305 (779)
....||+||+|-.|...+.... -.|+++.++|||.||.++...|+ .+..|+.++. .
T Consensus 375 KtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~QNwE-hl~~ifdHLn~~P~k~h~~D 453 (698)
T KOG2340|consen 375 KTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLMQNWE-HLLHIFDHLNLQPSKQHDVD 453 (698)
T ss_pred HHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHHhhHH-HHHHHHHHhhcCcccccCCC
Confidence 1246999999999988886311 24889999999999998887766 5566665542 1
Q ss_pred ---------------CCceEEeeccccHHHHHHHHHhccCcEEEec----------CCCCCCCccceEEEEEeccccchh
Q psy17912 306 ---------------DRQVLMWSATWPKEVQKLAEDFLVDYVQLNI----------GSLNPTANHNIVQIVDVCQEHEKD 360 (779)
Q Consensus 306 ---------------~~qilllSAT~~~~v~~l~~~~l~~~~~i~i----------~~~~~~~~~~i~~~~~~~~~~~k~ 360 (779)
-+|+++||+-..+....++..++.+..-... ........+.+.............
T Consensus 454 fSRVR~wyL~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D 533 (698)
T KOG2340|consen 454 FSRVRMWYLDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPD 533 (698)
T ss_pred hhheehheeccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCch
Confidence 1588999998888888888777765321111 111111111111111111122233
Q ss_pred HHHHHHHHHhc----cCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q psy17912 361 YKLQGLLSQIG----SERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKS 436 (779)
Q Consensus 361 ~~L~~ll~~i~----~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~ 436 (779)
..+..++..|. ......+|||.|+.-+-..+.+++++..+....+|--.+...-.++-+.|-.|...||+-|.-+
T Consensus 534 ~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~- 612 (698)
T KOG2340|consen 534 ARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERA- 612 (698)
T ss_pred HHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhh-
Confidence 34444444443 2334567999999999999999999999888899988888888899999999999999999855
Q ss_pred cccccCcccccccccceeEEEEcCCCCCHHHH---HHHhccCCCCC
Q psy17912 437 QQERDRVLNEFRIGRASILVSQYKESQQKRDR---VLNEFRIGRAS 479 (779)
Q Consensus 437 ~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~y---iQR~GRaGR~g 479 (779)
+..+.+.++. +..||.|.+|..+.-| +.+.+|+.-.|
T Consensus 613 -----hffrR~~ikG-Vk~vVfYqpP~~P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 613 -----HFFRRYHIKG-VKNVVFYQPPNNPHFYSEIINMSDKTTSQG 652 (698)
T ss_pred -----hhhhhheecc-eeeEEEecCCCCcHHHHHHHhhhhhhhccC
Confidence 2222233333 2389999999998766 67777765444
No 150
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=8.7e-12 Score=146.62 Aligned_cols=121 Identities=10% Similarity=0.078 Sum_probs=89.1
Q ss_pred cchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q psy17912 357 HEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKS 436 (779)
Q Consensus 357 ~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~ 436 (779)
..|...+..-+..+. ..+.||||-+.|.+..+.|+++|...|++.-++++.....|-+-|-++=+ .-.|-|||++|+
T Consensus 611 ~eK~~Aii~ei~~~~-~~GrPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIVA~AG~--~GaVTIATNMAG 687 (1112)
T PRK12901 611 REKYNAVIEEITELS-EAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQ--PGTVTIATNMAG 687 (1112)
T ss_pred HHHHHHHHHHHHHHH-HCCCCEEEEeCcHHHHHHHHHHHHHcCCcHHHhhccchhhHHHHHHhcCC--CCcEEEeccCcC
Confidence 345555555454443 36899999999999999999999999999888888755444444433322 347999999999
Q ss_pred cccccCccc-ccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeE
Q psy17912 437 QQERDRVLN-EFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 437 ~GIDip~v~-~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~ 482 (779)
||.|+.--. +-.++. .+||-...+.|..---|-.||+||-|.+|
T Consensus 688 RGTDIkLg~~V~e~GG--L~VIgTerheSrRID~QLrGRaGRQGDPG 732 (1112)
T PRK12901 688 RGTDIKLSPEVKAAGG--LAIIGTERHESRRVDRQLRGRAGRQGDPG 732 (1112)
T ss_pred CCcCcccchhhHHcCC--CEEEEccCCCcHHHHHHHhcccccCCCCC
Confidence 999976211 112232 37788888999999999999999999777
No 151
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.41 E-value=9.8e-13 Score=112.21 Aligned_cols=81 Identities=23% Similarity=0.338 Sum_probs=77.2
Q ss_pred HHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHH
Q psy17912 390 DITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRV 469 (779)
Q Consensus 390 ~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yi 469 (779)
.+++.|...++.+..+||+++..+|..+++.|+++...|||+|+++++|+|+|.++ .|+.+++|.+...|.
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~---------~vi~~~~~~~~~~~~ 72 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVD---------LVIIYDLPWSPASYI 72 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCC---------EEEEeCCCCCHHHHH
Confidence 57788888899999999999999999999999999999999999999999999988 999999999999999
Q ss_pred HHhccCCCCC
Q psy17912 470 LNEFRIGRAS 479 (779)
Q Consensus 470 QR~GRaGR~g 479 (779)
|++||++|.|
T Consensus 73 Q~~gR~~R~g 82 (82)
T smart00490 73 QRIGRAGRAG 82 (82)
T ss_pred HhhcccccCC
Confidence 9999999975
No 152
>KOG0386|consensus
Probab=99.39 E-value=1.9e-12 Score=149.18 Aligned_cols=309 Identities=16% Similarity=0.202 Sum_probs=193.6
Q ss_pred CCCCHHHHHHHHHHh----cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 149 QAPTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
.++.+||...+.++. ++-|-|+..++|.|||...+. ++.++...+ ...||. ||+||+..|.+. ..++...
T Consensus 393 G~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIs-LitYLmE~K---~~~GP~-LvivPlstL~NW-~~Ef~kW 466 (1157)
T KOG0386|consen 393 GELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTIS-LITYLMEHK---QMQGPF-LIIVPLSTLVNW-SSEFPKW 466 (1157)
T ss_pred CCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHH-HHHHHHHHc---ccCCCe-EEeccccccCCc-hhhcccc
Confidence 478899999999886 345789999999999976543 344444432 235776 999999999883 3344443
Q ss_pred cccCCceEEEEeCCCCChhh--HHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhh
Q psy17912 225 GSATATRVACVFGGAPKGPQ--VKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQ 302 (779)
Q Consensus 225 ~~~~~l~v~~~~gg~~~~~~--~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~ 302 (779)
+. .+..+...|....+.. .......++|+++|++.+.. ....+.--++.++||||.|+|... ...+...+..
T Consensus 467 aP--Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa--~~KLt~~L~t 540 (1157)
T KOG0386|consen 467 AP--SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNA--ICKLTDTLNT 540 (1157)
T ss_pred cc--ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccch--hhHHHHHhhc
Confidence 32 3433333443222111 11222458999999987654 111123335789999999998764 2223333321
Q ss_pred cCCCCceEEeecccc----HHHHHH-------------------------------------------------------
Q psy17912 303 IRPDRQVLMWSATWP----KEVQKL------------------------------------------------------- 323 (779)
Q Consensus 303 l~~~~qilllSAT~~----~~v~~l------------------------------------------------------- 323 (779)
.-.....+++|.|.- +++..+
T Consensus 541 ~y~~q~RLLLTGTPLQN~LpELWaLLNFlLP~IFnS~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRPFlLRR 620 (1157)
T KOG0386|consen 541 HYRAQRRLLLTGTPLQNNLPELWALLNFLLPNIFNSCKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRPFLLRR 620 (1157)
T ss_pred cccchhhhhhcCChhhhccHHHHHHHHHhccchhhhHhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhHHHHHh
Confidence 112223333444410 000000
Q ss_pred ----HHHhccCcEEEec-----------------------CC----CC-----------------CCCccceEEE----E
Q psy17912 324 ----AEDFLVDYVQLNI-----------------------GS----LN-----------------PTANHNIVQI----V 351 (779)
Q Consensus 324 ----~~~~l~~~~~i~i-----------------------~~----~~-----------------~~~~~~i~~~----~ 351 (779)
+...+++.+...+ +. .. +....++... .
T Consensus 621 lKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~ 700 (1157)
T KOG0386|consen 621 LKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHY 700 (1157)
T ss_pred hhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhcccccccc
Confidence 0000111000000 00 00 0000000000 0
Q ss_pred ---EeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCC---
Q psy17912 352 ---DVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGR--- 425 (779)
Q Consensus 352 ---~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~--- 425 (779)
.......|...|..++..+. ..++++|.||....-.+.+..+|.-.++....+.|.+..++|...++.|..-.
T Consensus 701 ~~~dL~R~sGKfELLDRiLPKLk-atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~y 779 (1157)
T KOG0386|consen 701 DIKDLVRVSGKFELLDRILPKLK-ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPY 779 (1157)
T ss_pred ChhHHHHhccHHHHHHhhhHHHH-hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCCCce
Confidence 01112356666777777663 35899999999999999999999999999999999999999999999998543
Q ss_pred CcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC
Q psy17912 426 ASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 426 ~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g 479 (779)
..+|.+|.+.+.|+|....+ .||.||..+++....|+--||-|.|
T Consensus 780 f~FllstragglglNlQtad---------tviifdsdwnp~~d~qaqdrahrig 824 (1157)
T KOG0386|consen 780 FIFLLSTRAGGLGLNLQTAD---------TVIIFDSDWNPHQDLQAQDRAHRIG 824 (1157)
T ss_pred eeeeeeecccccccchhhcc---------eEEEecCCCCchhHHHHHHHHHHhh
Confidence 56899999999999988877 8999999999999999888888877
No 153
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=2.2e-11 Score=140.25 Aligned_cols=232 Identities=19% Similarity=0.200 Sum_probs=135.3
Q ss_pred hHHHHHHHHHhc--cCCCCc-EEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy17912 360 DYKLQGLLSQIG--SERTSK-TIIFVETKRKADDITRSVRNK-----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVS 431 (779)
Q Consensus 360 ~~~L~~ll~~i~--~~~~~k-vLVF~~s~~~ae~L~~~L~~~-----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVA 431 (779)
...+.-+++.+. ...... +||++||++.|.++++.+... ++.+..++||++...+...++. | .+||||
T Consensus 81 ~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVa 156 (513)
T COG0513 81 AAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVA 156 (513)
T ss_pred HHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEE
Confidence 344555555554 222223 999999999999999998753 5778999999998888766654 5 999999
Q ss_pred ecccccccccCcccccccccceeEEEEcC-CCC--CHHHHHHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhcccccee
Q psy17912 432 QYNKSQQERDRVLNEFRIGRASILVSQYK-ESQ--QKRDRVLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASIL 507 (779)
Q Consensus 432 T~v~~~GIDip~v~~~~~~~~~~~VI~y~-~p~--s~~~yiQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il 507 (779)
|+ +|.+|.-.-..+.+...-++|++-. .-. ...+-+..+...-..-....+++..-++. ..+...+......+.
T Consensus 157 TP--GRllD~i~~~~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~ 234 (513)
T COG0513 157 TP--GRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIE 234 (513)
T ss_pred Cc--cHHHHHHHcCCcchhhcCEEEeccHhhhhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEE
Confidence 99 7777644443445555555666521 000 11122222221111122222222221111 112222211111111
Q ss_pred eccccccHHHHHHhhhhhcccccchhhhccccc-HHHHHH----HHHHhhhcceEEEEecccchhhHHHHHHhhcCccce
Q psy17912 508 VSHYNKSQQERDRVLNEFRIGRASILVSHYNKS-QQERDR----VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRA 582 (779)
Q Consensus 508 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (779)
+.. .......+. +.--.+... +.++.. +++..... ..|+|++||+.++++...|+..|+.+.
T Consensus 235 v~~-~~~~~~~~~-----------i~q~~~~v~~~~~k~~~L~~ll~~~~~~-~~IVF~~tk~~~~~l~~~l~~~g~~~~ 301 (513)
T COG0513 235 VSV-EKLERTLKK-----------IKQFYLEVESEEEKLELLLKLLKDEDEG-RVIVFVRTKRLVEELAESLRKRGFKVA 301 (513)
T ss_pred Ecc-ccccccccC-----------ceEEEEEeCCHHHHHHHHHHHHhcCCCC-eEEEEeCcHHHHHHHHHHHHHCCCeEE
Confidence 110 000000000 000001111 122333 33333333 499999999999999999999999999
Q ss_pred eEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 583 SILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
+| |||++|+||+++|+.|+.|+..|||.
T Consensus 302 ~l---hG~l~q~~R~~~l~~F~~g~~~vLVa 329 (513)
T COG0513 302 AL---HGDLPQEERDRALEKFKDGELRVLVA 329 (513)
T ss_pred Ee---cCCCCHHHHHHHHHHHHcCCCCEEEE
Confidence 99 99999999999999999999999986
No 154
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.33 E-value=4.3e-10 Score=133.98 Aligned_cols=77 Identities=13% Similarity=0.298 Sum_probs=56.9
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHh----cCCCcEEEEecccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK-GWAAVAIHGNKSQQERDRVLNEFR----IGRASILVSQYNKS 436 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~-g~~v~~ihg~~~~~eR~~il~~F~----~G~~~ILVAT~v~~ 436 (779)
.+...+..+.. ..+.+|||++|.+..+.+++.|... +.. ...+|. ..+..+++.|+ .++-.||++|..+.
T Consensus 522 ~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~~~~~-ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~ 596 (697)
T PRK11747 522 EMAEFLPELLE-KHKGSLVLFASRRQMQKVADLLPRDLRLM-LLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFA 596 (697)
T ss_pred HHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHhcCCc-EEEeCC---chHHHHHHHHHHHhccCCCeEEEEecccc
Confidence 34444444444 4566999999999999999999753 333 344554 35678887776 46778999999999
Q ss_pred cccccCc
Q psy17912 437 QQERDRV 443 (779)
Q Consensus 437 ~GIDip~ 443 (779)
+|||+|+
T Consensus 597 EGVD~pG 603 (697)
T PRK11747 597 EGLDLPG 603 (697)
T ss_pred ccccCCC
Confidence 9999986
No 155
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.31 E-value=4.8e-10 Score=134.04 Aligned_cols=71 Identities=27% Similarity=0.323 Sum_probs=58.4
Q ss_pred HcCCCCCCHHHHHHHHHHh----cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHH
Q psy17912 145 EMGFQAPTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETV 220 (779)
Q Consensus 145 ~~g~~~p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 220 (779)
.+...+|++.|.+.+..+. +++.+++.||||+|||++|++|++.+.... +.+++|.++|..|-.|+.+.
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~-------~~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREE-------GKKVIISTRTKALQEQLLEE 82 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHc-------CCcEEEECCCHHHHHHHHHh
Confidence 3566789999999986554 556699999999999999999999987663 35799999999999988655
Q ss_pred HH
Q psy17912 221 AN 222 (779)
Q Consensus 221 ~~ 222 (779)
..
T Consensus 83 ~~ 84 (654)
T COG1199 83 DL 84 (654)
T ss_pred hc
Confidence 43
No 156
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.28 E-value=1.3e-09 Score=130.92 Aligned_cols=74 Identities=12% Similarity=0.104 Sum_probs=61.7
Q ss_pred cCCCCCCHHHHHHHHHHh----cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHH
Q psy17912 146 MGFQAPTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVA 221 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 221 (779)
+.|..++|.|.+.+..+. .+.++++.+|||+|||++.+.|++.+....+ ..+++++.+.|.+=..|..+++
T Consensus 6 FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 6 FPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred cCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHH
Confidence 456777999999886654 7789999999999999999999998876532 2368999999999999999888
Q ss_pred HHh
Q psy17912 222 NDF 224 (779)
Q Consensus 222 ~~~ 224 (779)
++.
T Consensus 81 k~~ 83 (705)
T TIGR00604 81 RKL 83 (705)
T ss_pred Hhh
Confidence 884
No 157
>KOG0921|consensus
Probab=99.24 E-value=1.3e-10 Score=132.32 Aligned_cols=333 Identities=16% Similarity=0.170 Sum_probs=198.9
Q ss_pred HHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHH-HHhcccCCceEE
Q psy17912 155 QAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVA-NDFGSATATRVA 233 (779)
Q Consensus 155 Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~-~~~~~~~~l~v~ 233 (779)
-.+++..+..+..+++-+.||+|||..+...+|..+.... ......+.+..|++..+.-+.+.+ ++-+...+
T Consensus 383 ~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns---~g~~~na~v~qprrisaisiaerva~er~e~~g---- 455 (1282)
T KOG0921|consen 383 RSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS---NGASFNAVVSQPRRISAISLAERVANERGEEVG---- 455 (1282)
T ss_pred HHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc---ccccccceeccccccchHHHHHHHHHhhHHhhc----
Confidence 4455566667788999999999999999888888877643 122235778889988887766544 33322222
Q ss_pred EEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchh-hhcCCchHHHHHHHhhcCCCCceEEe
Q psy17912 234 CVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADR-MLDMGFEPQIRKIIGQIRPDRQVLMW 312 (779)
Q Consensus 234 ~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~-l~~~~f~~~l~~il~~l~~~~qilll 312 (779)
..+|...+.+. .....-..|++||.+.++..+... +..+.++|+||+|. -.+..|...+..-+....++..+++|
T Consensus 456 ~tvgy~vRf~S-a~prpyg~i~fctvgvllr~~e~g---lrg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lm 531 (1282)
T KOG0921|consen 456 ETCGYNVRFDS-ATPRPYGSIMFCTVGVLLRMMENG---LRGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLM 531 (1282)
T ss_pred ccccccccccc-cccccccceeeeccchhhhhhhhc---ccccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhh
Confidence 22233222221 111222479999999999988664 66788999999993 33434544444333333456666666
Q ss_pred eccccHHH--------------------HHHHHHhccCcEEEecCCCCCCCc-----------------cceEEEEEe--
Q psy17912 313 SATWPKEV--------------------QKLAEDFLVDYVQLNIGSLNPTAN-----------------HNIVQIVDV-- 353 (779)
Q Consensus 313 SAT~~~~v--------------------~~l~~~~l~~~~~i~i~~~~~~~~-----------------~~i~~~~~~-- 353 (779)
|||+..+. +.+.......+............. .+....-.+
T Consensus 532 satIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~ 611 (1282)
T KOG0921|consen 532 SATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNE 611 (1282)
T ss_pred hcccchhhhhhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcc
Confidence 66654321 122221111111110000000000 000000000
Q ss_pred --------ccccc-hhHHHHHHHHHhccC-CCCcEEEEecchhHHHHHHHHHHhC-------CCeEEEEcCCCCHHHHHH
Q psy17912 354 --------CQEHE-KDYKLQGLLSQIGSE-RTSKTIIFVETKRKADDITRSVRNK-------GWAAVAIHGNKSQQERDR 416 (779)
Q Consensus 354 --------~~~~~-k~~~L~~ll~~i~~~-~~~kvLVF~~s~~~ae~L~~~L~~~-------g~~v~~ihg~~~~~eR~~ 416 (779)
..+.+ ....+..++..+... -.+-++||.+.......|...|... .+++...|+.+...++.+
T Consensus 612 ~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrk 691 (1282)
T KOG0921|consen 612 STRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRK 691 (1282)
T ss_pred hhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhh
Confidence 00000 112233333333322 3567999999999999999988643 467899999999999999
Q ss_pred HHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCC----------HHHHHHHhccCCCCCCeEEEEE
Q psy17912 417 VLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQ----------KRDRVLNEFRIGRASILVSHYN 486 (779)
Q Consensus 417 il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s----------~~~yiQR~GRaGR~g~~~~~~~ 486 (779)
+.+....|..+++++|++++..+.+.++. +.+......++.|..-.+ ....+||.||+||.. .+.++.
T Consensus 692 vf~~~p~gv~kii~stniaetsiTidd~v-~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR-~G~~f~ 769 (1282)
T KOG0921|consen 692 VFEPVPEGVTKIILSTNIAETSITIDDVV-YVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVR-PGFCFH 769 (1282)
T ss_pred ccCcccccccccccccceeeEeeeeccee-EEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceec-cccccc
Confidence 99999999999999999999999766644 333333344455544433 345579999999874 344555
Q ss_pred cChHHHHHHHHhhh
Q psy17912 487 KSQQERDRVLNEFR 500 (779)
Q Consensus 487 ~~~~e~~~~l~e~~ 500 (779)
.....+...++...
T Consensus 770 lcs~arF~~l~~~~ 783 (1282)
T KOG0921|consen 770 LCSRARFEALEDHG 783 (1282)
T ss_pred ccHHHHHHHHHhcC
Confidence 55555665655543
No 158
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.23 E-value=1.1e-09 Score=128.43 Aligned_cols=136 Identities=16% Similarity=0.168 Sum_probs=93.5
Q ss_pred EccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHh--
Q psy17912 171 IAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKAL-- 248 (779)
Q Consensus 171 ~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l-- 248 (779)
.+.+|||||.+|+-.+-..+.. |..+|||+|...|+.|+.+.+++... +..+..++++.+..+..+.+
T Consensus 166 ~~~~GSGKTevyl~~i~~~l~~--------Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~ 235 (665)
T PRK14873 166 QALPGEDWARRLAAAAAATLRA--------GRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLA 235 (665)
T ss_pred hcCCCCcHHHHHHHHHHHHHHc--------CCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHH
Confidence 3346999999998777666654 55799999999999999999987653 24577888887766544332
Q ss_pred -h-cCCeEEEeChHHHHHHHHcCC-cCCCCeeEEEEccchhh--hcCC-chHHHHHH--HhhcCCCCceEEeeccccHHH
Q psy17912 249 -Q-TGAEIVIATPGRLIDYLEQGT-INLHRTSYLVLDEADRM--LDMG-FEPQIRKI--IGQIRPDRQVLMWSATWPKEV 320 (779)
Q Consensus 249 -~-~~~~IiV~Tpe~Ll~~l~~~~-~~l~~i~~lViDEaH~l--~~~~-f~~~l~~i--l~~l~~~~qilllSAT~~~~v 320 (779)
. ...+|+|+|- +.. ..++++++|||||=|-- .+.. .....+.+ +.....+..+|+-|||..-+.
T Consensus 236 ~~~G~~~IViGtR--------SAvFaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles 307 (665)
T PRK14873 236 VLRGQARVVVGTR--------SAVFAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEA 307 (665)
T ss_pred HhCCCCcEEEEcc--------eeEEeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHH
Confidence 2 3478999994 222 36889999999999932 2221 22222222 222235889999999987665
Q ss_pred HHHH
Q psy17912 321 QKLA 324 (779)
Q Consensus 321 ~~l~ 324 (779)
...+
T Consensus 308 ~~~~ 311 (665)
T PRK14873 308 QALV 311 (665)
T ss_pred HHHH
Confidence 4443
No 159
>KOG4439|consensus
Probab=99.19 E-value=6.1e-10 Score=124.55 Aligned_cols=112 Identities=16% Similarity=0.106 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc--C-CCcEEEEeccc
Q psy17912 359 KDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRI--G-RASILVSQYNK 435 (779)
Q Consensus 359 k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~--G-~~~ILVAT~v~ 435 (779)
|...+...++.+......+++|..+-......+...|.+.|+....+||.....+|..+++.|.. | ....|++-.+.
T Consensus 730 Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAG 809 (901)
T KOG4439|consen 730 KIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAG 809 (901)
T ss_pred HHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccC
Confidence 44445555555544456677777766666778888899999999999999999999999999963 4 44567777888
Q ss_pred ccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC
Q psy17912 436 SQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 436 ~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g 479 (779)
+.|||+.+.+ ++|..|+-+++.-=.|.+-|.=|.|
T Consensus 810 GVGLNL~GaN---------HlilvDlHWNPaLEqQAcDRIYR~G 844 (901)
T KOG4439|consen 810 GVGLNLIGAN---------HLILVDLHWNPALEQQACDRIYRMG 844 (901)
T ss_pred cceeeecccc---------eEEEEecccCHHHHHHHHHHHHHhc
Confidence 9999988887 8888888888876666666666665
No 160
>PTZ00110 helicase; Provisional
Probab=99.19 E-value=4.4e-10 Score=130.66 Aligned_cols=222 Identities=14% Similarity=0.136 Sum_probs=124.5
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIG 450 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~ 450 (779)
...+||.+||++.|.++.+.+.+. ++.+..++|+.+...+...+. ....|||+|+ ++=+|+-.-....+.
T Consensus 203 gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~----~~~~IlVaTP--grL~d~l~~~~~~l~ 276 (545)
T PTZ00110 203 GPIVLVLAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALR----RGVEILIACP--GRLIDFLESNVTNLR 276 (545)
T ss_pred CcEEEEECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHH----cCCCEEEECH--HHHHHHHHcCCCChh
Confidence 456899999999999999988864 467888999988766554443 3579999997 222222111111223
Q ss_pred cceeEEEEc-CC--CCCHHHHHHHhccCCCCCCeEEEEEcChH-HHHHHHHhhhccc-cceeeccccccHHHHHHhhhhh
Q psy17912 451 RASILVSQY-KE--SQQKRDRVLNEFRIGRASILVSHYNKSQQ-ERDRVLNEFRIGR-ASILVSHYNKSQQERDRVLNEF 525 (779)
Q Consensus 451 ~~~~~VI~y-~~--p~s~~~yiQR~GRaGR~g~~~~~~~~~~~-e~~~~l~e~~~~~-~~il~~~~~~~~~~~~~~l~~~ 525 (779)
+...+|++= |. .......+.++-..-+......++...-+ +...+..++.... ..+.+....... .
T Consensus 277 ~v~~lViDEAd~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~---------~ 347 (545)
T PTZ00110 277 RVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTA---------C 347 (545)
T ss_pred hCcEEEeehHHhhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCcccc---------C
Confidence 333454441 11 01111111222111122223333333222 2222333322111 111111110000 0
Q ss_pred cccccchhhhcccccHHHHHHHHHHhh-hcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhh
Q psy17912 526 RIGRASILVSHYNKSQQERDRVLNEFR-IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR 604 (779)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (779)
......+.+............+|++.. .+...|||++|++.|+++.+.|+..||+++++ ||+++|+||+++|++|+
T Consensus 348 ~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~i---hg~~~~~eR~~il~~F~ 424 (545)
T PTZ00110 348 HNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPALCI---HGDKKQEERTWVLNEFK 424 (545)
T ss_pred CCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEEEE---ECCCcHHHHHHHHHHHh
Confidence 000000100000001112333555554 67789999999999999999999999999999 99999999999999999
Q ss_pred cCCceeEEec
Q psy17912 605 IGRASILVSH 614 (779)
Q Consensus 605 ~~~~~~~~~~ 614 (779)
.|+.+|||+-
T Consensus 425 ~G~~~ILVaT 434 (545)
T PTZ00110 425 TGKSPIMIAT 434 (545)
T ss_pred cCCCcEEEEc
Confidence 9999999983
No 161
>KOG0388|consensus
Probab=99.19 E-value=4.9e-10 Score=124.76 Aligned_cols=121 Identities=15% Similarity=0.195 Sum_probs=104.5
Q ss_pred ccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC-CCcEEEEecc
Q psy17912 356 EHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIG-RASILVSQYN 434 (779)
Q Consensus 356 ~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G-~~~ILVAT~v 434 (779)
+..|...|..||..+.. .++++|+|++..+..+.+.++|.-.++....+.|.....+|..++.+|+.. ...+|++|.+
T Consensus 1026 dSgKL~~LDeLL~kLka-egHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRA 1104 (1185)
T KOG0388|consen 1026 DSGKLVVLDELLPKLKA-EGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRA 1104 (1185)
T ss_pred cccceeeHHHHHHHhhc-CCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEeccc
Confidence 45677788888888754 489999999999999999999999999999999999999999999999864 4568999999
Q ss_pred cccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC--CeEEEEE
Q psy17912 435 KSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS--ILVSHYN 486 (779)
Q Consensus 435 ~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g--~~~~~~~ 486 (779)
.+-||++...+ .||.|+..+++..-.|..-||-|-| ..+++|-
T Consensus 1105 GGLGINLTAAD---------TViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyr 1149 (1185)
T KOG0388|consen 1105 GGLGINLTAAD---------TVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYR 1149 (1185)
T ss_pred Ccccccccccc---------eEEEecCCCCcchhhHHHHHHHhccCccceeeee
Confidence 99999998877 8999999999988888888888877 3345544
No 162
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.17 E-value=3.7e-09 Score=122.55 Aligned_cols=283 Identities=13% Similarity=0.090 Sum_probs=174.4
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQV 245 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~ 245 (779)
.-.++-+|+|||||.+.+-++-..+.. ...++|+|+..++|+.+....++...-. ++.. +.+....
T Consensus 50 ~V~vVRSpMGTGKTtaLi~wLk~~l~~-------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~---Y~d~~~~--- 115 (824)
T PF02399_consen 50 GVLVVRSPMGTGKTTALIRWLKDALKN-------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVN---YLDSDDY--- 115 (824)
T ss_pred CeEEEECCCCCCcHHHHHHHHHHhccC-------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-ccee---eeccccc---
Confidence 457889999999997654444333222 2447999999999999998888765321 2211 1111100
Q ss_pred HHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHH-------HHhhcCCCCceEEeeccccH
Q psy17912 246 KALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRK-------IIGQIRPDRQVLMWSATWPK 318 (779)
Q Consensus 246 ~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~-------il~~l~~~~qilllSAT~~~ 318 (779)
.......+-+++..+.|.... ...+.++++|||||+-.++..=|.+.+.+ +...+.....+|++-||+..
T Consensus 116 ~i~~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~ 192 (824)
T PF02399_consen 116 IIDGRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLND 192 (824)
T ss_pred cccccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCH
Confidence 000112467777777775543 22467799999999997665533332222 23344567889999999999
Q ss_pred HHHHHHHHhccC-cEEEecCCCCCCCccceEEEEE----------------------------------eccccchhHHH
Q psy17912 319 EVQKLAEDFLVD-YVQLNIGSLNPTANHNIVQIVD----------------------------------VCQEHEKDYKL 363 (779)
Q Consensus 319 ~v~~l~~~~l~~-~~~i~i~~~~~~~~~~i~~~~~----------------------------------~~~~~~k~~~L 363 (779)
...++++.+..+ .+.+.+.........+-...+. .....+....+
T Consensus 193 ~tvdFl~~~Rp~~~i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 193 QTVDFLASCRPDENIHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHHHhCCCCcEEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 999999887543 3333332211100000000000 00001122334
Q ss_pred HHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCc
Q psy17912 364 QGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRV 443 (779)
Q Consensus 364 ~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~ 443 (779)
..|+..+. .++++-||+.|...++.++++.......+..+++..+..+ + +.+ ++.+|+|-|+++..|+++..
T Consensus 273 ~~L~~~L~--~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~d---v-~~W--~~~~VviYT~~itvG~Sf~~ 344 (824)
T PF02399_consen 273 SELLARLN--AGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLED---V-ESW--KKYDVVIYTPVITVGLSFEE 344 (824)
T ss_pred HHHHHHHh--CCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCccc---c-ccc--cceeEEEEeceEEEEeccch
Confidence 44445443 4677889999999999999999999889999988776652 2 223 47999999999999998654
Q ss_pred ccccccccceeEEEEc--C--CCCCHHHHHHHhccCCCCCC
Q psy17912 444 LNEFRIGRASILVSQY--K--ESQQKRDRVLNEFRIGRASI 480 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y--~--~p~s~~~yiQR~GRaGR~g~ 480 (779)
.. ..-+.-| . .--++.+..|++||+-.-..
T Consensus 345 ~H-------F~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~ 378 (824)
T PF02399_consen 345 KH-------FDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD 378 (824)
T ss_pred hh-------ceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc
Confidence 33 1112222 1 12356778999999977653
No 163
>KOG0339|consensus
Probab=99.16 E-value=1.9e-10 Score=124.09 Aligned_cols=217 Identities=18% Similarity=0.215 Sum_probs=144.5
Q ss_pred CCc-EEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccc
Q psy17912 375 TSK-TIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRI 449 (779)
Q Consensus 375 ~~k-vLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~ 449 (779)
.+| .+|.|||++.|.++....++. |+.+.++|||.+..++...++ -...|+|||+ +|-||+.-....++
T Consensus 295 ~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk----~g~EivVaTP--gRlid~VkmKatn~ 368 (731)
T KOG0339|consen 295 EGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELK----EGAEIVVATP--GRLIDMVKMKATNL 368 (731)
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhh----cCCeEEEech--HHHHHHHHhhcccc
Confidence 344 466679999999988877664 789999999999999988877 4689999999 99998766666778
Q ss_pred ccceeEEEEc-----CCC--CCHHHHHHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeeccccccHHHHHHh
Q psy17912 450 GRASILVSQY-----KES--QQKRDRVLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQQERDRV 521 (779)
Q Consensus 450 ~~~~~~VI~y-----~~p--~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~~~~~~~ 521 (779)
.++.++|++- ++- ..+.+..|. -|.-.....|+.+-..+ ..+..++..+...+++...........
T Consensus 369 ~rvS~LV~DEadrmfdmGfe~qVrSI~~h----irpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dIT-- 442 (731)
T KOG0339|consen 369 SRVSYLVLDEADRMFDMGFEPQVRSIKQH----IRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDIT-- 442 (731)
T ss_pred eeeeEEEEechhhhhccccHHHHHHHHhh----cCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchh--
Confidence 8888888862 211 112222221 12222233333322222 234444444444444442221111000
Q ss_pred hhhhcccccchhhhcccc-cHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHh
Q psy17912 522 LNEFRIGRASILVSHYNK-SQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVL 600 (779)
Q Consensus 522 l~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (779)
..+.+.+.+. -++---+.|-+|-.-...|+|..-|-..+++...|..-|+.-+.+ ||||.|+||..||
T Consensus 443 --------Q~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~ll---hgdkdqa~rn~~l 511 (731)
T KOG0339|consen 443 --------QTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLL---HGDKDQAERNEVL 511 (731)
T ss_pred --------heeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceeeee---cCchhhHHHHHHH
Confidence 0122222221 233444577788887778889888889999999999999987766 9999999999999
Q ss_pred hhhhcCCceeEEec
Q psy17912 601 NEFRIGRASILVSH 614 (779)
Q Consensus 601 ~~~~~~~~~~~~~~ 614 (779)
.+||.++.||+|.-
T Consensus 512 s~fKkk~~~Vlvat 525 (731)
T KOG0339|consen 512 SKFKKKRKPVLVAT 525 (731)
T ss_pred HHHhhcCCceEEEe
Confidence 99999999999864
No 164
>KOG0335|consensus
Probab=99.13 E-value=8.1e-10 Score=121.37 Aligned_cols=207 Identities=20% Similarity=0.301 Sum_probs=120.3
Q ss_pred CcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccccc
Q psy17912 376 SKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGR 451 (779)
Q Consensus 376 ~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~ 451 (779)
..+||..||++.++++++.-++. +..+...+|+.+... ...+....+.|||||+ ++-.|+-....+.+..
T Consensus 153 P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~----q~~~~~~gcdIlvaTp--GrL~d~~e~g~i~l~~ 226 (482)
T KOG0335|consen 153 PRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA----QLRFIKRGCDILVATP--GRLKDLIERGKISLDN 226 (482)
T ss_pred CceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh----hhhhhccCccEEEecC--chhhhhhhcceeehhh
Confidence 67999999999999999998864 566778888844332 3334446899999998 6655544433222222
Q ss_pred ceeEEEEcCCCCCHHH-------HHHHhccCCCC---CCeEEEEEcChHH-HHHHHHhhhccccceeeccccccHHHHHH
Q psy17912 452 ASILVSQYKESQQKRD-------RVLNEFRIGRA---SILVSHYNKSQQE-RDRVLNEFRIGRASILVSHYNKSQQERDR 520 (779)
Q Consensus 452 ~~~~VI~y~~p~s~~~-------yiQR~GRaGR~---g~~~~~~~~~~~e-~~~~l~e~~~~~~~il~~~~~~~~~~~~~ 520 (779)
..++|++ ...-+.+ .-+-.++.+-. -....+|...-++ -.++ ..+.
T Consensus 227 ~k~~vLD--EADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l---------------------~~~f 283 (482)
T KOG0335|consen 227 CKFLVLD--EADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRL---------------------AADF 283 (482)
T ss_pred CcEEEec--chHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhh---------------------HHHH
Confidence 2233332 1111100 01111222211 1111222211111 1111 1222
Q ss_pred hhhhh------cccccchhhhc---ccccHHHHHHHHHHhh-------hc----ceEEEEecccchhhHHHHHHhhcCcc
Q psy17912 521 VLNEF------RIGRASILVSH---YNKSQQERDRVLNEFR-------IG----RASILVSHYNKSQQERDRVLNEFRIG 580 (779)
Q Consensus 521 ~l~~~------~~~~~~~~~~~---~~~~~~~~~~~l~~~~-------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (779)
+.+.| ++|+..-.+.+ +-....+++++|+--. .+ ...++|++|+|.||+++.+|.+.|+|
T Consensus 284 l~~~yi~laV~rvg~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~ 363 (482)
T KOG0335|consen 284 LKDNYIFLAVGRVGSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYP 363 (482)
T ss_pred hhccceEEEEeeeccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCC
Confidence 22111 23333322222 1122234444333222 12 16899999999999999999999999
Q ss_pred ceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 581 RASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+-+| |||.+|+||+.-|+.||+|+.|+||.-
T Consensus 364 ~~sI---hg~~tq~er~~al~~Fr~g~~pvlVaT 394 (482)
T KOG0335|consen 364 AKSI---HGDRTQIEREQALNDFRNGKAPVLVAT 394 (482)
T ss_pred ceee---cchhhhhHHHHHHHHhhcCCcceEEEe
Confidence 9999 999999999999999999999999974
No 165
>KOG0391|consensus
Probab=99.12 E-value=6.9e-09 Score=120.93 Aligned_cols=105 Identities=19% Similarity=0.244 Sum_probs=92.1
Q ss_pred ccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCC--CcEEEEec
Q psy17912 356 EHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGR--ASILVSQY 433 (779)
Q Consensus 356 ~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~--~~ILVAT~ 433 (779)
+..|...|.-||.++.. .++++|||.+..+..+.|..+|.-+|+-.+.+.|....++|...++.|.... ..++++|.
T Consensus 1258 DcGKLQtLAiLLqQLk~-eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr 1336 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLKS-EGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR 1336 (1958)
T ss_pred ccchHHHHHHHHHHHHh-cCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc
Confidence 34578888888988854 4899999999999999999999999999999999999999999999999764 35789999
Q ss_pred ccccccccCcccccccccceeEEEEcCCCCCHHHHHH
Q psy17912 434 NKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVL 470 (779)
Q Consensus 434 v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQ 470 (779)
..+.|||+-+.+ -||.||..+++..-.|
T Consensus 1337 SggvGiNLtgAD---------TVvFYDsDwNPtMDaQ 1364 (1958)
T KOG0391|consen 1337 SGGVGINLTGAD---------TVVFYDSDWNPTMDAQ 1364 (1958)
T ss_pred CCccccccccCc---------eEEEecCCCCchhhhH
Confidence 999999999888 8999999888765444
No 166
>KOG1002|consensus
Probab=99.05 E-value=1.4e-08 Score=109.64 Aligned_cols=96 Identities=22% Similarity=0.193 Sum_probs=76.8
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEecccccccccCccccccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIG-RAS-ILVSQYNKSQQERDRVLNEFRIGR 451 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G-~~~-ILVAT~v~~~GIDip~v~~~~~~~ 451 (779)
..-+.|||.+.....+.+.-.|.+.|+.++-+.|+|++..|..+++.|++. .++ +||+-.+.+.-+|+....
T Consensus 637 ~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteAS------ 710 (791)
T KOG1002|consen 637 RTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEAS------ 710 (791)
T ss_pred cchhhhhHHHHHHHHHHHHHHhhccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhc------
Confidence 456899999999999999999999999999999999999999999999974 333 678888888888888776
Q ss_pred ceeEEEEcCCCCCHHHHHHHhccCCCC
Q psy17912 452 ASILVSQYKESQQKRDRVLNEFRIGRA 478 (779)
Q Consensus 452 ~~~~VI~y~~p~s~~~yiQR~GRaGR~ 478 (779)
.|+..|+=+++.--.|-.-|.-|-
T Consensus 711 ---qVFmmDPWWNpaVe~Qa~DRiHRI 734 (791)
T KOG1002|consen 711 ---QVFMMDPWWNPAVEWQAQDRIHRI 734 (791)
T ss_pred ---eeEeecccccHHHHhhhhhhHHhh
Confidence 778877766665444433333333
No 167
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.04 E-value=3e-09 Score=114.27 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=92.6
Q ss_pred HHHHHHHHHh-------------cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHH
Q psy17912 154 IQAQGWPIAL-------------SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETV 220 (779)
Q Consensus 154 ~Q~~~i~~il-------------~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 220 (779)
+|.+++..++ ..+.+|++.++|+|||...+..+.. +...... .....+|||+|. .+..+|..+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~-l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E 76 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISY-LKNEFPQ--RGEKKTLIVVPS-SLLSQWKEE 76 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHH-HHHCCTT--SS-S-EEEEE-T-TTHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhh-hhhcccc--ccccceeEeecc-chhhhhhhh
Confidence 5778877763 3357999999999999776665543 3332111 111249999999 788899999
Q ss_pred HHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHc---CCcCCCCeeEEEEccchhhhcCCchHHHH
Q psy17912 221 ANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQ---GTINLHRTSYLVLDEADRMLDMGFEPQIR 297 (779)
Q Consensus 221 ~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~---~~~~l~~i~~lViDEaH~l~~~~f~~~l~ 297 (779)
+.++.....+++....|...............+++|+|++.+...... ..+.--.+++||+||+|.+.+. .....
T Consensus 77 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~ 154 (299)
T PF00176_consen 77 IEKWFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRY 154 (299)
T ss_dssp HHHHSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHH
T ss_pred hccccccccccccccccccccccccccccccceeeeccccccccccccccccccccccceeEEEecccccccc--ccccc
Confidence 999986556677666665511111122234579999999988811000 0111234899999999998543 33444
Q ss_pred HHHhhcCCCCceEEeeccc
Q psy17912 298 KIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 298 ~il~~l~~~~qilllSAT~ 316 (779)
..+..+. ....+++|||+
T Consensus 155 ~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 155 KALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp HHHHCCC-ECEEEEE-SS-
T ss_pred ccccccc-cceEEeecccc
Confidence 4444454 66788899995
No 168
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.03 E-value=5.2e-10 Score=104.23 Aligned_cols=136 Identities=19% Similarity=0.197 Sum_probs=82.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGP 243 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~ 243 (779)
+|+-.++-..+|+|||.-.+.-++...... +.++|||.|||.++..+.+.++.. .+++. .....
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~-------~~rvLvL~PTRvva~em~~aL~~~----~~~~~--t~~~~--- 66 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKR-------RLRVLVLAPTRVVAEEMYEALKGL----PVRFH--TNARM--- 66 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHT-------T--EEEEESSHHHHHHHHHHTTTS----SEEEE--STTSS---
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHc-------cCeEEEecccHHHHHHHHHHHhcC----CcccC--ceeee---
Confidence 455578889999999987766666554442 558999999999999877776543 33221 11110
Q ss_pred hHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC--chHHHHHHHhhcCCCCceEEeeccccHHH
Q psy17912 244 QVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG--FEPQIRKIIGQIRPDRQVLMWSATWPKEV 320 (779)
Q Consensus 244 ~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~--f~~~l~~il~~l~~~~qilllSAT~~~~v 320 (779)
.....+.-|-++|...+.+++.. ...+..+++||+||||..-... +...+..... .....+|+||||.|-..
T Consensus 67 --~~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~--~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 67 --RTHFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE--SGEAKVIFMTATPPGSE 140 (148)
T ss_dssp ------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH--TTS-EEEEEESS-TT--
T ss_pred --ccccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhh--ccCeeEEEEeCCCCCCC
Confidence 12234467899999999888865 5568899999999999743321 2222222211 13467999999988653
No 169
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=98.99 E-value=2.1e-08 Score=123.88 Aligned_cols=112 Identities=16% Similarity=0.142 Sum_probs=96.6
Q ss_pred chhHHHHHHH-HHhccCCCC--cEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEe
Q psy17912 358 EKDYKLQGLL-SQIGSERTS--KTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIG--RASILVSQ 432 (779)
Q Consensus 358 ~k~~~L~~ll-~~i~~~~~~--kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G--~~~ILVAT 432 (779)
.|...+.+++ ..+.. .+. ++|||++.....+.+...|...++....++|.++..+|...++.|.++ ...++++|
T Consensus 692 ~k~~~l~~ll~~~~~~-~~~~~kvlifsq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~ 770 (866)
T COG0553 692 GKLQALDELLLDKLLE-EGHYHKVLIFSQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSL 770 (866)
T ss_pred hHHHHHHHHHHHHHHh-hcccccEEEEeCcHHHHHHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEe
Confidence 4566666666 44433 344 999999999999999999999998999999999999999999999985 56688888
Q ss_pred cccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC
Q psy17912 433 YNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 433 ~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g 479 (779)
.+.+.|++....+ .||.||+.+++....|...|+-|-|
T Consensus 771 kagg~glnLt~a~---------~vi~~d~~wnp~~~~Qa~dRa~Rig 808 (866)
T COG0553 771 KAGGLGLNLTGAD---------TVILFDPWWNPAVELQAIDRAHRIG 808 (866)
T ss_pred cccccceeecccc---------eEEEeccccChHHHHHHHHHHHHhc
Confidence 9999999988776 9999999999999999888888877
No 170
>KOG0333|consensus
Probab=98.95 E-value=9.4e-09 Score=111.95 Aligned_cols=225 Identities=16% Similarity=0.231 Sum_probs=130.8
Q ss_pred CCCcEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRN----KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRI 449 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~----~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~ 449 (779)
.+...+|..+|+..++.+.+.=.+ .|+.+..+-|+++-+++---+. -.+.|+|||+ ++-+|.-.-+.+.+
T Consensus 321 ~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls----~gceiviatP--grLid~Lenr~lvl 394 (673)
T KOG0333|consen 321 EGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLS----MGCEIVIATP--GRLIDSLENRYLVL 394 (673)
T ss_pred cCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhh----ccceeeecCc--hHHHHHHHHHHHHh
Confidence 467799999999999998887655 3788999999999887744333 3689999999 88887544333333
Q ss_pred ccceeEEEEc-----CC--CCCHH-HHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccc---cceeecccccc---H
Q psy17912 450 GRASILVSQY-----KE--SQQKR-DRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGR---ASILVSHYNKS---Q 515 (779)
Q Consensus 450 ~~~~~~VI~y-----~~--p~s~~-~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~---~~il~~~~~~~---~ 515 (779)
....++|.+- |+ -..+. .+-||=--..-.+. -..+.-..+...|...+ ..++++-.-+. .
T Consensus 395 ~qctyvvldeadrmiDmgfE~dv~~iL~~mPssn~k~~t------de~~~~~~~~~~~~~~k~yrqT~mftatm~p~ver 468 (673)
T KOG0333|consen 395 NQCTYVVLDEADRMIDMGFEPDVQKILEQMPSSNAKPDT------DEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVER 468 (673)
T ss_pred ccCceEeccchhhhhcccccHHHHHHHHhCCccccCCCc------cchhhHHHHHhhcccccceeEEEEEecCCChHHHH
Confidence 3333333220 11 00000 11111000000000 00001112222332222 22222221111 1
Q ss_pred HHHHHhhhhh--cc---cccchhhhc---ccccHHHHHH---HHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeE
Q psy17912 516 QERDRVLNEF--RI---GRASILVSH---YNKSQQERDR---VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASI 584 (779)
Q Consensus 516 ~~~~~~l~~~--~~---~~~~~~~~~---~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (779)
..+.++-... .| |+..-.+.. .-..++++++ +|++. ..-++|||+|||++||-+...|...||-+.-+
T Consensus 469 lar~ylr~pv~vtig~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~-~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tl 547 (673)
T KOG0333|consen 469 LARSYLRRPVVVTIGSAGKPTPRVEQKVEMVSEDEKRKKLIEILESN-FDPPIIIFVNTKKGADALAKILEKAGYKVTTL 547 (673)
T ss_pred HHHHHhhCCeEEEeccCCCCccchheEEEEecchHHHHHHHHHHHhC-CCCCEEEEEechhhHHHHHHHHhhccceEEEe
Confidence 2222222211 12 222211111 1122334444 66666 55689999999999999999999999999998
Q ss_pred eeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 585 LVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
||+|+|.+|...|+.||.|+.-|||..
T Consensus 548 ---Hg~k~qeQRe~aL~~fr~~t~dIlVaT 574 (673)
T KOG0333|consen 548 ---HGGKSQEQRENALADFREGTGDILVAT 574 (673)
T ss_pred ---eCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999999999999999999999863
No 171
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.92 E-value=3.7e-08 Score=115.18 Aligned_cols=127 Identities=22% Similarity=0.233 Sum_probs=94.2
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCce
Q psy17912 152 TAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATR 231 (779)
Q Consensus 152 ~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~ 231 (779)
+|+=.|.+-.+.-...-|+-+.||=|||++..+|+....+. |..+.++...--||..-.+++..+...+|+.
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LGls 151 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLS 151 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCc
Confidence 44445555556556667899999999999999999876655 3457888888999999899999999999999
Q ss_pred EEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcC------CcCCCCeeEEEEccchhhh
Q psy17912 232 VACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQG------TINLHRTSYLVLDEADRML 288 (779)
Q Consensus 232 v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~------~~~l~~i~~lViDEaH~l~ 288 (779)
+++...+.+..+..... .|||.++|...| .+++..+ ......+.+.|+||+|-++
T Consensus 152 vG~~~~~m~~~ek~~aY--~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 152 VGVILAGMSPEEKRAAY--ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeeccCCCChHHHHHHH--hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 99998888665443333 479999998666 2333222 1234467899999999654
No 172
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.92 E-value=1.5e-08 Score=108.43 Aligned_cols=73 Identities=18% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCCHHHHHHH----HHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 150 APTAIQAQGW----PIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 150 ~p~~~Q~~~i----~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
.|+|.|.+.+ ..+.++.++++.+|||+|||+++++|++.++...+... .+.+++|+++|.++..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~--~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI--QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc--cccceeEEeccHHHHHHHHHHHHhc
Confidence 3699999955 45558899999999999999999999998876533210 2347999999999988887777665
No 173
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.92 E-value=1.5e-08 Score=108.43 Aligned_cols=73 Identities=18% Similarity=0.107 Sum_probs=57.6
Q ss_pred CCCHHHHHHH----HHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 150 APTAIQAQGW----PIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 150 ~p~~~Q~~~i----~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
.|+|.|.+.+ ..+.++.++++.+|||+|||+++++|++.++...+... .+.+++|+++|.++..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~--~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERI--QKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccc--cccceeEEeccHHHHHHHHHHHHhc
Confidence 3699999955 45558899999999999999999999998876533210 2347999999999988887777665
No 174
>KOG0328|consensus
Probab=98.91 E-value=2.7e-08 Score=100.72 Aligned_cols=219 Identities=16% Similarity=0.206 Sum_probs=133.3
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRI 449 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~ 449 (779)
...++||..||++.+.++.+.+... ++.+...-||.+-.+--+.++ -...++..|+ ++=+|+-..+.++.
T Consensus 94 r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld----~G~hvVsGtP--Grv~dmikr~~L~t 167 (400)
T KOG0328|consen 94 RETQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLD----YGQHVVSGTP--GRVLDMIKRRSLRT 167 (400)
T ss_pred ceeeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhc----ccceEeeCCC--chHHHHHHhccccc
Confidence 3567999999999999999988765 567777778877655444444 2456778887 66666544444445
Q ss_pred ccceeEEEEcC-C--CCCHHHHHHHhccCCCCCCeEEEEEcCh-HHHHHHHHhhhccccceeeccccccHH-HHHHhhhh
Q psy17912 450 GRASILVSQYK-E--SQQKRDRVLNEFRIGRASILVSHYNKSQ-QERDRVLNEFRIGRASILVSHYNKSQQ-ERDRVLNE 524 (779)
Q Consensus 450 ~~~~~~VI~y~-~--p~s~~~yiQR~GRaGR~g~~~~~~~~~~-~e~~~~l~e~~~~~~~il~~~~~~~~~-~~~~~l~~ 524 (779)
+.+-.+|.+-. . ..-.-+-+-++=|.--.|..++++...- .+-..+.+.|..+...|++-.-..... .++...
T Consensus 168 r~vkmlVLDEaDemL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v-- 245 (400)
T KOG0328|consen 168 RAVKMLVLDEADEMLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFV-- 245 (400)
T ss_pred cceeEEEeccHHHHHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhhee--
Confidence 55444444311 0 0011111122223333444455554332 333555566655555555433222211 111100
Q ss_pred hcccccchhhhcccccHHHHHHHHH--HhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhh
Q psy17912 525 FRIGRASILVSHYNKSQQERDRVLN--EFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 602 (779)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (779)
. -+...=+.|-.-+ .+-..--.||||+||+..|=++.-|+++.+--.|. |||..|.|||.+.++
T Consensus 246 ----------~-ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssm---HGDm~qkERd~im~d 311 (400)
T KOG0328|consen 246 ----------A-VEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSM---HGDMEQKERDKIMND 311 (400)
T ss_pred ----------e-echhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeec---cCCcchhHHHHHHHH
Confidence 0 0000002333222 22233458999999999999999999999999999 999999999999999
Q ss_pred hhcCCceeEEec
Q psy17912 603 FRIGRASILVSH 614 (779)
Q Consensus 603 ~~~~~~~~~~~~ 614 (779)
||+|+|.+|+|.
T Consensus 312 FRsg~SrvLitT 323 (400)
T KOG0328|consen 312 FRSGKSRVLITT 323 (400)
T ss_pred hhcCCceEEEEe
Confidence 999999999885
No 175
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=98.90 E-value=4.9e-08 Score=114.99 Aligned_cols=210 Identities=17% Similarity=0.168 Sum_probs=120.3
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccccc-cccC
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK-----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY-----NKSQQ-ERDR 442 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~-----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~-----v~~~G-IDip 442 (779)
...++||.|||++.|.++++.+... ++.+..+||+.+...+...++ ....|+|+|+ .+.++ +++.
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~----~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR----QGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhc----CCCCEEEECHHHHHHHHHcCCcchh
Confidence 3457999999999999998887652 688999999998776655543 4688999996 22222 3344
Q ss_pred cccccccccceeEEEE-cCC--CCCHHHHHHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeeccccccHHHH
Q psy17912 443 VLNEFRIGRASILVSQ-YKE--SQQKRDRVLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQQER 518 (779)
Q Consensus 443 ~v~~~~~~~~~~~VI~-y~~--p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~~~~ 518 (779)
.+. .+|++ .+. ......-+..+=..-.......+++...+.. ..+..+|......+.+.....
T Consensus 149 ~l~--------~lVlDEAd~ml~~gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~----- 215 (629)
T PRK11634 149 KLS--------GLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT----- 215 (629)
T ss_pred hce--------EEEeccHHHHhhcccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccc-----
Confidence 433 23333 111 0111111111111111122223333332222 223333322211111110000
Q ss_pred HHhhhhhcccccchhhhcccccHHHH----HHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhh
Q psy17912 519 DRVLNEFRIGRASILVSHYNKSQQER----DRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQ 594 (779)
Q Consensus 519 ~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (779)
....+...++.....++ .++|+... ....|+|++|++.++++...|...|+.+.++ |||.+|.
T Consensus 216 ---------~~~~i~q~~~~v~~~~k~~~L~~~L~~~~-~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~l---hgd~~q~ 282 (629)
T PRK11634 216 ---------TRPDISQSYWTVWGMRKNEALVRFLEAED-FDAAIIFVRTKNATLEVAEALERNGYNSAAL---NGDMNQA 282 (629)
T ss_pred ---------cCCceEEEEEEechhhHHHHHHHHHHhcC-CCCEEEEeccHHHHHHHHHHHHhCCCCEEEe---eCCCCHH
Confidence 00001111111111122 22333332 2468999999999999999999999999999 9999999
Q ss_pred hHhhHhhhhhcCCceeEEe
Q psy17912 595 ERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~ 613 (779)
+|+++++.|+.|+..|||+
T Consensus 283 ~R~~il~~Fr~G~~~ILVA 301 (629)
T PRK11634 283 LREQTLERLKDGRLDILIA 301 (629)
T ss_pred HHHHHHHHHhCCCCCEEEE
Confidence 9999999999999999988
No 176
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.88 E-value=1.2e-07 Score=108.94 Aligned_cols=222 Identities=14% Similarity=0.229 Sum_probs=135.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc-ccccccCccccc-ccccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK-SQQERDRVLNEF-RIGRA 452 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~-~~GIDip~v~~~-~~~~~ 452 (779)
.+.+||.+|++..+....+.|...++.+..++++.+..++..++.....|+.+||++|+-. ....+. ...+ .....
T Consensus 51 ~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~--~~~l~~~~~i 128 (470)
T TIGR00614 51 DGITLVISPLISLMEDQVLQLKASGIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRL--LQTLEERKGI 128 (470)
T ss_pred CCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhH--HHHHHhcCCc
Confidence 5679999999999999999999999999999999999999999999999999999999722 111100 0000 11222
Q ss_pred eeEEEEc-CCC----CCHHHHHHHhccCC--CCCCeEEEEEcCh--HHHHHHHHhhhccccceeeccccccHHHHHHhhh
Q psy17912 453 SILVSQY-KES----QQKRDRVLNEFRIG--RASILVSHYNKSQ--QERDRVLNEFRIGRASILVSHYNKSQQERDRVLN 523 (779)
Q Consensus 453 ~~~VI~y-~~p----~s~~~yiQR~GRaG--R~g~~~~~~~~~~--~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~ 523 (779)
..+||+= +.- .+...-+.+++..- .......+++... .....++..+......+....++... +
T Consensus 129 ~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~n-----l-- 201 (470)
T TIGR00614 129 TLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPN-----L-- 201 (470)
T ss_pred CEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCC-----c--
Confidence 2344431 110 01111111111110 1122233333222 22233444433333333322222110 0
Q ss_pred hhcccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhh
Q psy17912 524 EFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 603 (779)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (779)
.+.+. .......++.-+.+.+...+.+.|+||+|++.|+++...|+..|++++.+ ||+.+++||..|+++|
T Consensus 202 ~~~v~------~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~---H~~l~~~eR~~i~~~F 272 (470)
T TIGR00614 202 YYEVR------RKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAY---HAGLEISARDDVHHKF 272 (470)
T ss_pred EEEEE------eCCccHHHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEe---eCCCCHHHHHHHHHHH
Confidence 00000 00111122333344434456677999999999999999999999999999 9999999999999999
Q ss_pred hcCCceeEEec
Q psy17912 604 RIGRASILVSH 614 (779)
Q Consensus 604 ~~~~~~~~~~~ 614 (779)
+.|+..|||+-
T Consensus 273 ~~g~~~vLVaT 283 (470)
T TIGR00614 273 QRDEIQVVVAT 283 (470)
T ss_pred HcCCCcEEEEe
Confidence 99999999984
No 177
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=98.86 E-value=9.8e-08 Score=116.10 Aligned_cols=212 Identities=18% Similarity=0.264 Sum_probs=132.9
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc-ccccccCcccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK-SQQERDRVLNEFR 448 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~-~~GIDip~v~~~~ 448 (779)
.+.+++|.+||+..|.+.++.|++. ++.+..++|..+..++..+++.+++|+.+|+|+|..+ ...+.+..+.
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~--- 575 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLG--- 575 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCC---
Confidence 3578999999999999999988763 5778899999999999999999999999999999843 2333444443
Q ss_pred cccceeEEEEcCCCC--CHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccccceeeccccccHHHHHHhhhhhc
Q psy17912 449 IGRASILVSQYKESQ--QKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR 526 (779)
Q Consensus 449 ~~~~~~~VI~y~~p~--s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~ 526 (779)
.+||+=..-. ...+.+.. -+.+.....++.....+.-.+..+.....+++... +
T Consensus 576 -----llVIDEahrfgv~~~~~L~~----~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~--p------------- 631 (926)
T TIGR00580 576 -----LLIIDEEQRFGVKQKEKLKE----LRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATP--P------------- 631 (926)
T ss_pred -----EEEeecccccchhHHHHHHh----cCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecC--C-------------
Confidence 3444311111 11111111 11223344444332222111111111111111110 0
Q ss_pred ccccch--hhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhh
Q psy17912 527 IGRASI--LVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR 604 (779)
Q Consensus 527 ~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (779)
.++..+ .+..++ ...-++.++++...|...++|+++.+.++++...|+.. +|-+.+.+.||+.+|.||+.++++|+
T Consensus 632 ~~R~~V~t~v~~~~-~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~L~~~-~p~~~v~~lHG~m~~~eRe~im~~F~ 709 (926)
T TIGR00580 632 EDRLPVRTFVMEYD-PELVREAIRRELLRGGQVFYVHNRIESIEKLATQLREL-VPEARIAIAHGQMTENELEEVMLEFY 709 (926)
T ss_pred CCccceEEEEEecC-HHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHHHHh-CCCCeEEEecCCCCHHHHHHHHHHHH
Confidence 000000 011111 12235567777778888999999999999999999975 23344445599999999999999999
Q ss_pred cCCceeEEec
Q psy17912 605 IGRASILVSH 614 (779)
Q Consensus 605 ~~~~~~~~~~ 614 (779)
.|+..||||-
T Consensus 710 ~Gk~~ILVaT 719 (926)
T TIGR00580 710 KGEFQVLVCT 719 (926)
T ss_pred cCCCCEEEEC
Confidence 9999999873
No 178
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=98.85 E-value=1e-07 Score=109.03 Aligned_cols=214 Identities=18% Similarity=0.235 Sum_probs=117.6
Q ss_pred CcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccccc
Q psy17912 376 SKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGR 451 (779)
Q Consensus 376 ~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~ 451 (779)
.++||.+||++.|.++.+.+... ++.+..++|+.+...+...+ .+..+|||||+ ++=++...-....+..
T Consensus 76 ~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l----~~~~~IiV~TP--~rL~~~~~~~~~~l~~ 149 (456)
T PRK10590 76 VRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKL----RGGVDVLVATP--GRLLDLEHQNAVKLDQ 149 (456)
T ss_pred ceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHH----cCCCcEEEECh--HHHHHHHHcCCccccc
Confidence 36999999999999999888753 67788899999877654433 26789999997 2212111111111222
Q ss_pred ceeEEEEc-CC--CCCHHHHHHHh-ccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeeccccccHHHHHHhhhhhc
Q psy17912 452 ASILVSQY-KE--SQQKRDRVLNE-FRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR 526 (779)
Q Consensus 452 ~~~~VI~y-~~--p~s~~~yiQR~-GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~ 526 (779)
...+|++= |. .......+.++ .... ......+++...... ..+...+......+.+...+.
T Consensus 150 v~~lViDEah~ll~~~~~~~i~~il~~l~-~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~------------- 215 (456)
T PRK10590 150 VEILVLDEADRMLDMGFIHDIRRVLAKLP-AKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNT------------- 215 (456)
T ss_pred ceEEEeecHHHHhccccHHHHHHHHHhCC-ccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccc-------------
Confidence 22344431 11 01111111111 1111 111223333222222 222222221111111110000
Q ss_pred ccccchh-hhcccccHHHHHHHHHHh---hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhh
Q psy17912 527 IGRASIL-VSHYNKSQQERDRVLNEF---RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 602 (779)
Q Consensus 527 ~~~~~~~-~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (779)
....+. ..++ ....++..+|... ......|+|++|++.++.+...|+..|+++..+ ||+.+|.||+.+++.
T Consensus 216 -~~~~i~~~~~~-~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~l---hg~~~~~~R~~~l~~ 290 (456)
T PRK10590 216 -ASEQVTQHVHF-VDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAI---HGNKSQGARTRALAD 290 (456)
T ss_pred -cccceeEEEEE-cCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEE---ECCCCHHHHHHHHHH
Confidence 000000 0001 1112222233222 123478999999999999999999999999999 999999999999999
Q ss_pred hhcCCceeEEec
Q psy17912 603 FRIGRASILVSH 614 (779)
Q Consensus 603 ~~~~~~~~~~~~ 614 (779)
|+.|+..|||+-
T Consensus 291 F~~g~~~iLVaT 302 (456)
T PRK10590 291 FKSGDIRVLVAT 302 (456)
T ss_pred HHcCCCcEEEEc
Confidence 999999999974
No 179
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.84 E-value=6.2e-08 Score=109.81 Aligned_cols=215 Identities=17% Similarity=0.147 Sum_probs=119.0
Q ss_pred CCcEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRN----KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIG 450 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~----~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~ 450 (779)
..++||.+|+++.|.++++.+.. .++.+..++|+.+...+...++ ...+|||+|+ ++-++...-..+.+.
T Consensus 83 ~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~TP--~~l~~~l~~~~~~l~ 156 (423)
T PRK04837 83 QPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLE----SGVDILIGTT--GRLIDYAKQNHINLG 156 (423)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhc----CCCCEEEECH--HHHHHHHHcCCcccc
Confidence 35799999999999998877654 3788999999988766555443 4679999997 222221100111122
Q ss_pred cceeEEEEc-CC------CCCHHHHHHHhccCCCCCCeEEEEEcChHHHH-HHHHhhhccccceeeccccccHHHHHHhh
Q psy17912 451 RASILVSQY-KE------SQQKRDRVLNEFRIGRASILVSHYNKSQQERD-RVLNEFRIGRASILVSHYNKSQQERDRVL 522 (779)
Q Consensus 451 ~~~~~VI~y-~~------p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~-~~l~e~~~~~~~il~~~~~~~~~~~~~~l 522 (779)
....+|++= |. -..+....+.+... ......+++....... .....+......+.+...... .
T Consensus 157 ~v~~lViDEad~l~~~~f~~~i~~i~~~~~~~--~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~---~---- 227 (423)
T PRK04837 157 AIQVVVLDEADRMFDLGFIKDIRWLFRRMPPA--NQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKT---G---- 227 (423)
T ss_pred cccEEEEecHHHHhhcccHHHHHHHHHhCCCc--cceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcC---C----
Confidence 222344431 11 11122222322111 0111223333222222 122222111111111100000 0
Q ss_pred hhhcccccchhhhcccccHHHHHHHHHHh---hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhH
Q psy17912 523 NEFRIGRASILVSHYNKSQQERDRVLNEF---RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRV 599 (779)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (779)
..+....+.....++...|.++ ......|+|++|++.|+++.+.|++.|+++..+ ||+.+|+||+.+
T Consensus 228 -------~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~l---hg~~~~~~R~~~ 297 (423)
T PRK04837 228 -------HRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLL---TGDVAQKKRLRI 297 (423)
T ss_pred -------CceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEe---cCCCChhHHHHH
Confidence 0000000111122222222222 124579999999999999999999999999998 999999999999
Q ss_pred hhhhhcCCceeEEec
Q psy17912 600 LNEFRIGRASILVSH 614 (779)
Q Consensus 600 ~~~~~~~~~~~~~~~ 614 (779)
+++|+.|+..|||+-
T Consensus 298 l~~F~~g~~~vLVaT 312 (423)
T PRK04837 298 LEEFTRGDLDILVAT 312 (423)
T ss_pred HHHHHcCCCcEEEEe
Confidence 999999999999984
No 180
>KOG0334|consensus
Probab=98.82 E-value=3.6e-08 Score=115.99 Aligned_cols=202 Identities=22% Similarity=0.272 Sum_probs=135.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccc---cc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRN----KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLN---EF 447 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~----~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~---~~ 447 (779)
+.-.||.|||++.+.++.+.+++ .++.+++.+|+...+++...+ +.| ..|+|||+ ++-||+-..+ +.
T Consensus 438 GPi~li~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiael---kRg-~eIvV~tp--GRmiD~l~~n~grvt 511 (997)
T KOG0334|consen 438 GPIALILAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAEL---KRG-AEIVVCTP--GRMIDILCANSGRVT 511 (997)
T ss_pred CceEEEEcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHH---hcC-CceEEecc--chhhhhHhhcCCccc
Confidence 34478999999999999988875 488999999998877665554 457 89999999 8889866555 44
Q ss_pred ccccceeEEEE-----cC---CCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccccceeeccc-ccc-HHH
Q psy17912 448 RIGRASILVSQ-----YK---ESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHY-NKS-QQE 517 (779)
Q Consensus 448 ~~~~~~~~VI~-----y~---~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~-~~~-~~~ 517 (779)
.+.++.++|.+ |+ .|.-.. .+|.+ |.-| +-++++-. ... ...
T Consensus 512 nlrR~t~lv~deaDrmfdmgfePq~~~-Ii~nl-rpdr--------------------------QtvlfSatfpr~m~~l 563 (997)
T KOG0334|consen 512 NLRRVTYLVLDEADRMFDMGFEPQITR-ILQNL-RPDR--------------------------QTVLFSATFPRSMEAL 563 (997)
T ss_pred cccccceeeechhhhhheeccCcccch-HHhhc-chhh--------------------------hhhhhhhhhhHHHHHH
Confidence 55665555543 22 122222 45554 3333 22222211 100 111
Q ss_pred HHHhhhh---hcccccchhhhc---------cc-ccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeE
Q psy17912 518 RDRVLNE---FRIGRASILVSH---------YN-KSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASI 584 (779)
Q Consensus 518 ~~~~l~~---~~~~~~~~~~~~---------~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 584 (779)
..+++.. ..+|+.+..... .. .-..+-..+|-++......|+|+.-.-.||.+-+-|-.-|||..||
T Consensus 564 a~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~sl 643 (997)
T KOG0334|consen 564 ARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSL 643 (997)
T ss_pred HHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCcchhhh
Confidence 1111111 123333322221 11 1133556688888888899999999999999999999999999999
Q ss_pred eeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 585 LVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
||+++|.+|||+++.||+|...+||.
T Consensus 644 ---HGgv~q~dR~sti~dfK~~~~~LLva 669 (997)
T KOG0334|consen 644 ---HGGVDQHDRSSTIEDFKNGVVNLLVA 669 (997)
T ss_pred ---cCCCchHHHHhHHHHHhccCceEEEe
Confidence 99999999999999999999987764
No 181
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.81 E-value=2.8e-07 Score=108.87 Aligned_cols=219 Identities=16% Similarity=0.205 Sum_probs=134.0
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccccccee
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASI 454 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~ 454 (779)
.+.+||.+|++.-+....+.|+..|+.+..+|++++..++..++.....|..+||+.|+- +-......+.........
T Consensus 53 ~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe--~l~~~~~~~~l~~~~l~~ 130 (591)
T TIGR01389 53 KGLTVVISPLISLMKDQVDQLRAAGVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPE--RLEQDYFLNMLQRIPIAL 130 (591)
T ss_pred CCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChh--HhcChHHHHHHhcCCCCE
Confidence 567899999999999999999999999999999999999999999999999999999972 111100000011111223
Q ss_pred EEEEc-CCC----CCHHHHHHHhccCCC--CCCeEEEEE--cChHHHHHHHHhhhccccceeeccccccHHHHHHhhhhh
Q psy17912 455 LVSQY-KES----QQKRDRVLNEFRIGR--ASILVSHYN--KSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 525 (779)
Q Consensus 455 ~VI~y-~~p----~s~~~yiQR~GRaGR--~g~~~~~~~--~~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~ 525 (779)
+||+= +.- .+...-+.+++..-. .+.....++ .....+..+...+.+....+++..++... + .+
T Consensus 131 iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~n-----l--~~ 203 (591)
T TIGR01389 131 VAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRPN-----L--RF 203 (591)
T ss_pred EEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCC-----c--EE
Confidence 44431 110 011111122221100 112233333 22223333444444433333333222110 0 00
Q ss_pred cccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhc
Q psy17912 526 RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRI 605 (779)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (779)
. +........+.-..+.+.. +.+.|+||+|.+.++++...|++.|+++..+ ||+-+++||..|+++|+.
T Consensus 204 ~-------v~~~~~~~~~l~~~l~~~~-~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~---H~~l~~~~R~~i~~~F~~ 272 (591)
T TIGR01389 204 S-------VVKKNNKQKFLLDYLKKHR-GQSGIIYASSRKKVEELAERLESQGISALAY---HAGLSNKVRAENQEDFLY 272 (591)
T ss_pred E-------EEeCCCHHHHHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHhCCCCEEEE---ECCCCHHHHHHHHHHHHc
Confidence 0 0001111222223333322 6788999999999999999999999999888 999999999999999999
Q ss_pred CCceeEEe
Q psy17912 606 GRASILVS 613 (779)
Q Consensus 606 ~~~~~~~~ 613 (779)
|+..|||+
T Consensus 273 g~~~vlVa 280 (591)
T TIGR01389 273 DDVKVMVA 280 (591)
T ss_pred CCCcEEEE
Confidence 99999987
No 182
>KOG0341|consensus
Probab=98.79 E-value=1.6e-08 Score=106.21 Aligned_cols=242 Identities=20% Similarity=0.275 Sum_probs=150.6
Q ss_pred CCCcEEEEecchhHHHHHHHHHHh-------CCC---eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRN-------KGW---AAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRV 443 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~-------~g~---~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~ 443 (779)
.+.-.||.|+|++.|.+.++.+.. .|+ +++..-|+++-.++.++++ ..+.|+|||+ ++-.|+-.
T Consensus 245 EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~----~GvHivVATP--GRL~DmL~ 318 (610)
T KOG0341|consen 245 EGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVR----RGVHIVVATP--GRLMDMLA 318 (610)
T ss_pred CCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHh----cCeeEEEcCc--chHHHHHH
Confidence 345579999999999877766643 344 4566679999999988887 4789999998 66555322
Q ss_pred ccc--cccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHH-HHHhhhccccceeeccc--cccHH-H
Q psy17912 444 LNE--FRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDR-VLNEFRIGRASILVSHY--NKSQQ-E 517 (779)
Q Consensus 444 v~~--~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~-~l~e~~~~~~~il~~~~--~~~~~-~ 517 (779)
-.. +++.+ +++.+ . |.| .+.+.-++..+ ++.-|.--+..+++|-. .+.+. .
T Consensus 319 KK~~sLd~CR--yL~lD-----E----------ADR------miDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FA 375 (610)
T KOG0341|consen 319 KKIMSLDACR--YLTLD-----E----------ADR------MIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFA 375 (610)
T ss_pred HhhccHHHHH--Hhhhh-----h----------HHH------HhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHH
Confidence 110 00111 11111 0 000 00011112222 33333333344555433 12222 3
Q ss_pred HHHhhhhh-----cccccchhhhc---ccccHHHHHHHHHHhhhcc-eEEEEecccchhhHHHHHHhhcCccceeEeeec
Q psy17912 518 RDRVLNEF-----RIGRASILVSH---YNKSQQERDRVLNEFRIGR-ASILVSHYNKSQQERDRVLNEFRIGRASILVSH 588 (779)
Q Consensus 518 ~~~~l~~~-----~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (779)
+..+.... +.|.+++.+.. |-+++.+.=++|++...-. +.+|||.-|-..|.+-.+|---|.-|+|| |
T Consensus 376 kSALVKPvtvNVGRAGAAsldViQevEyVkqEaKiVylLeCLQKT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaI---H 452 (610)
T KOG0341|consen 376 KSALVKPVTVNVGRAGAASLDVIQEVEYVKQEAKIVYLLECLQKTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAI---H 452 (610)
T ss_pred HhhcccceEEecccccccchhHHHHHHHHHhhhhhhhHHHHhccCCCceEEEeccccChHHHHHHHHHccceeEEe---e
Confidence 33444433 33444443332 4455556666888876655 67789999999999999999999999999 9
Q ss_pred cchhhhhHhhHhhhhhcCCceeEEeccccch----hHHhhhhh----------hhcccc------eeEEeeccccchhH
Q psy17912 589 YNKSQQERDRVLNEFRIGRASILVSHYNKSQ----QERDRVLN----------EFRIGR------ASILVSHYNKSQQE 647 (779)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------~~~~~~------~~~~~~~~~~~~~~ 647 (779)
|+|.|.+|+.-..-||.|+.-+||..--.|. +.-..|+| -.|||| ..|-.+..||.|.|
T Consensus 453 GGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRsg~~GiATTfINK~~~e 531 (610)
T KOG0341|consen 453 GGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRSGKTGIATTFINKNQEE 531 (610)
T ss_pred cCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCCCCcceeeeeecccchH
Confidence 9999999999999999999999998644332 12223333 135555 56888888998876
No 183
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=98.78 E-value=1.9e-07 Score=107.07 Aligned_cols=221 Identities=20% Similarity=0.237 Sum_probs=126.3
Q ss_pred HHHHHHHhccC-CCCcEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec---
Q psy17912 363 LQGLLSQIGSE-RTSKTIIFVETKRKADDITRSVRNK-----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY--- 433 (779)
Q Consensus 363 L~~ll~~i~~~-~~~kvLVF~~s~~~ae~L~~~L~~~-----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~--- 433 (779)
+..++..+... ...++||.|||++.|.++++.++.. ++.+..++|+.+...+...++ ...+|+|+|+
T Consensus 59 ~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl 134 (460)
T PRK11776 59 GLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRI 134 (460)
T ss_pred HHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHH
Confidence 34444444322 2347999999999999999888753 578899999999877665554 5789999996
Q ss_pred --ccc-cccccCcccccccccceeEEEE-cCC--CCCHHHHHHHhccCCCCCCeEEEEEcChHHHH-HHHHhhhccccce
Q psy17912 434 --NKS-QQERDRVLNEFRIGRASILVSQ-YKE--SQQKRDRVLNEFRIGRASILVSHYNKSQQERD-RVLNEFRIGRASI 506 (779)
Q Consensus 434 --v~~-~GIDip~v~~~~~~~~~~~VI~-y~~--p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~-~~l~e~~~~~~~i 506 (779)
.+. ..+++..++ .+|++ .+. ......-+.++-+.-........++...+... .+...+......+
T Consensus 135 ~~~l~~~~~~l~~l~--------~lViDEad~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i 206 (460)
T PRK11776 135 LDHLRKGTLDLDALN--------TLVLDEADRMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEV 206 (460)
T ss_pred HHHHHcCCccHHHCC--------EEEEECHHHHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEE
Confidence 221 123344433 23333 110 01111111111111111122333333333322 2233322211111
Q ss_pred eeccccccHHHHHHhhhhhcccccchhhhcccccHHHH----HHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccce
Q psy17912 507 LVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQER----DRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRA 582 (779)
Q Consensus 507 l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (779)
.+...... ..+....+.....++ .++|..+. ....|+||+|++.++++.+.|+..|+++.
T Consensus 207 ~~~~~~~~---------------~~i~~~~~~~~~~~k~~~l~~ll~~~~-~~~~lVF~~t~~~~~~l~~~L~~~~~~v~ 270 (460)
T PRK11776 207 KVESTHDL---------------PAIEQRFYEVSPDERLPALQRLLLHHQ-PESCVVFCNTKKECQEVADALNAQGFSAL 270 (460)
T ss_pred EECcCCCC---------------CCeeEEEEEeCcHHHHHHHHHHHHhcC-CCceEEEECCHHHHHHHHHHHHhCCCcEE
Confidence 11110000 000000111111222 22343333 34689999999999999999999999999
Q ss_pred eEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 583 SILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
.+ ||+.+|.||+.+++.|+.|+..|||+.
T Consensus 271 ~~---hg~~~~~eR~~~l~~F~~g~~~vLVaT 299 (460)
T PRK11776 271 AL---HGDLEQRDRDQVLVRFANRSCSVLVAT 299 (460)
T ss_pred EE---eCCCCHHHHHHHHHHHHcCCCcEEEEe
Confidence 98 999999999999999999999999985
No 184
>PRK10689 transcription-repair coupling factor; Provisional
Probab=98.77 E-value=1.3e-07 Score=117.66 Aligned_cols=215 Identities=19% Similarity=0.244 Sum_probs=134.5
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc-ccccccCcccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK-SQQERDRVLNEFR 448 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~-~~GIDip~v~~~~ 448 (779)
.+.+++|.|||+..|.++++.|++. ++.+..+++..+..++..+++.+++|..+|||+|..+ ...+.+..+.
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~--- 724 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLG--- 724 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCC---
Confidence 4678999999999999999988753 4678889999999999999999999999999999733 2233333333
Q ss_pred cccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccccceeeccccccHHHHHHhhhhhccc
Q psy17912 449 IGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIG 528 (779)
Q Consensus 449 ~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 528 (779)
.+||+=..-.... ...++ +.-+.......++.....+...+........+++...... +. . +
T Consensus 725 -----lLVIDEahrfG~~-~~e~l-k~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~------r~-~---v- 786 (1147)
T PRK10689 725 -----LLIVDEEHRFGVR-HKERI-KAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPAR------RL-A---V- 786 (1147)
T ss_pred -----EEEEechhhcchh-HHHHH-HhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCC------CC-C---c-
Confidence 3444411101111 11222 1112233344444442222111111111122222111000 00 0 0
Q ss_pred ccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCc
Q psy17912 529 RASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRA 608 (779)
Q Consensus 529 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (779)
. -....++ ....++.++.+...|...++|+++.+.++.+.+.|+.. +|.+.+.+.||+.+|+||+.|+++|+.|+.
T Consensus 787 -~-~~~~~~~-~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~L~~~-~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~ 862 (1147)
T PRK10689 787 -K-TFVREYD-SLVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL-VPEARIAIGHGQMRERELERVMNDFHHQRF 862 (1147)
T ss_pred -e-EEEEecC-cHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh-CCCCcEEEEeCCCCHHHHHHHHHHHHhcCC
Confidence 0 0011121 12346778888888888999999999999999999987 233444555999999999999999999999
Q ss_pred eeEEe
Q psy17912 609 SILVS 613 (779)
Q Consensus 609 ~~~~~ 613 (779)
.|||+
T Consensus 863 ~VLVa 867 (1147)
T PRK10689 863 NVLVC 867 (1147)
T ss_pred CEEEE
Confidence 99986
No 185
>KOG0336|consensus
Probab=98.77 E-value=5.7e-08 Score=102.84 Aligned_cols=212 Identities=17% Similarity=0.226 Sum_probs=149.1
Q ss_pred CCCcEEEEecchhHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRN---KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIG 450 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~---~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~ 450 (779)
....+||+.++++.+..+.-+..+ .|....+++|+-...++-+.++ +...|++||+ ++-.|+-.-++.+++
T Consensus 293 ~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lk----rgveiiiatP--grlndL~~~n~i~l~ 366 (629)
T KOG0336|consen 293 NGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLK----RGVEIIIATP--GRLNDLQMDNVINLA 366 (629)
T ss_pred CCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHh----cCceEEeeCC--chHhhhhhcCeeeee
Confidence 466799999999999888777665 4677788888877665555444 5789999999 777776666666666
Q ss_pred cceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccccceeecccccc--HHHHHHhhhhh---
Q psy17912 451 RASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKS--QQERDRVLNEF--- 525 (779)
Q Consensus 451 ~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~~~~--~~~~~~~l~~~--- 525 (779)
...++|++-.. .++- .-.++.-.++|-+.+.++..++.+-.=+. ....+..+.+.
T Consensus 367 siTYlVlDEAD-----rMLD---------------MgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v 426 (629)
T KOG0336|consen 367 SITYLVLDEAD-----RMLD---------------MGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIV 426 (629)
T ss_pred eeEEEEecchh-----hhhc---------------ccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEE
Confidence 76667665110 0000 00122334566777888877777754222 22233333322
Q ss_pred cccccchhhhccc------ccHHHHHHHHHHhh----hcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhh
Q psy17912 526 RIGRASILVSHYN------KSQQERDRVLNEFR----IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQE 595 (779)
Q Consensus 526 ~~~~~~~~~~~~~------~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 595 (779)
..|..++.+-|.- .++.+.-.+++.|- .-.+.|+|+..|-.+|.+.--|...|+.+-|| |||.+|..
T Consensus 427 ~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~l---HG~r~Q~D 503 (629)
T KOG0336|consen 427 YVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSL---HGNREQSD 503 (629)
T ss_pred EecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhc---cCChhhhh
Confidence 4566665555532 23445555666664 44589999999999999999999999999999 99999999
Q ss_pred HhhHhhhhhcCCceeEEec
Q psy17912 596 RDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~ 614 (779)
|+.-|+.||+|...|||..
T Consensus 504 rE~al~~~ksG~vrILvaT 522 (629)
T KOG0336|consen 504 REMALEDFKSGEVRILVAT 522 (629)
T ss_pred HHHHHHhhhcCceEEEEEe
Confidence 9999999999999999875
No 186
>KOG1015|consensus
Probab=98.76 E-value=1.9e-07 Score=107.43 Aligned_cols=118 Identities=21% Similarity=0.156 Sum_probs=95.0
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHh----------------------CCCeEEEEcCCCCHHHHHH
Q psy17912 359 KDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRN----------------------KGWAAVAIHGNKSQQERDR 416 (779)
Q Consensus 359 k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~----------------------~g~~v~~ihg~~~~~eR~~ 416 (779)
|.-.|+++|... ..-+.++|||.++....+.+..+|.. .|.....|.|.....+|..
T Consensus 1127 KmiLLleIL~mc-eeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k 1205 (1567)
T KOG1015|consen 1127 KMILLLEILRMC-EEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKK 1205 (1567)
T ss_pred ceehHHHHHHHH-HHhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHH
Confidence 334455566543 34578999999999999999999973 1445778999999999999
Q ss_pred HHHHHhcCC----CcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC--CeEEEEE
Q psy17912 417 VLNEFRIGR----ASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS--ILVSHYN 486 (779)
Q Consensus 417 il~~F~~G~----~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g--~~~~~~~ 486 (779)
..+.|.+-. .-.||+|.+.+.|||+...+ .||.||..+++.--+|-+=|+=|.| .++++|-
T Consensus 1206 ~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAAN---------RVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYR 1272 (1567)
T KOG1015|consen 1206 WAEEFNDPTNLRARLFLISTRAGSLGINLVAAN---------RVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYR 1272 (1567)
T ss_pred HHHHhcCcccceeEEEEEeeccCccccceeecc---------eEEEEecccCCccchHHHHHHHhhcCcCceeehh
Confidence 999998532 23899999999999999888 8999999999998899999999988 4445543
No 187
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.76 E-value=2.7e-07 Score=108.00 Aligned_cols=210 Identities=15% Similarity=0.183 Sum_probs=120.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----cccc--ccccCc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY-----NKSQ--QERDRV 443 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~-----v~~~--GIDip~ 443 (779)
..++||.+||++.|.++++.+... ++.+..+||+.+...+...++ +..+|||+|+ .+.. .+++..
T Consensus 84 ~~raLIl~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~----~~~dIiV~TP~rL~~~l~~~~~~~l~~ 159 (572)
T PRK04537 84 DPRALILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQ----QGVDVIIATPGRLIDYVKQHKVVSLHA 159 (572)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHh----CCCCEEEECHHHHHHHHHhccccchhh
Confidence 357999999999999999887753 678999999999877766554 4689999996 1111 122222
Q ss_pred ccccccccceeEEEEc-C------CCCCHHHHHHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeeccccccH
Q psy17912 444 LNEFRIGRASILVSQY-K------ESQQKRDRVLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQ 515 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y-~------~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~ 515 (779)
+. .+|++= + .-..+...+.+..- +......+++..-..+ .....++......+++......
T Consensus 160 v~--------~lViDEAh~lld~gf~~~i~~il~~lp~--~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~- 228 (572)
T PRK04537 160 CE--------ICVLDEADRMFDLGFIKDIRFLLRRMPE--RGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETIT- 228 (572)
T ss_pred ee--------eeEecCHHHHhhcchHHHHHHHHHhccc--ccCceEEEEeCCccHHHHHHHHHHhcCCcEEEecccccc-
Confidence 22 233331 1 01111112221110 1112233333332222 1222222111111111100000
Q ss_pred HHHHHhhhhhcccccchhhhcccccHHHHHHHHHHh--hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhh
Q psy17912 516 QERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF--RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQ 593 (779)
Q Consensus 516 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (779)
...+ ...+. +....++...++.-+ ..+...|+|++|++.++++.+.|+..|+..+.+ ||+.+|
T Consensus 229 --~~~i-------~q~~~---~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~l---hg~l~~ 293 (572)
T PRK04537 229 --AARV-------RQRIY---FPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVL---SGDVPQ 293 (572)
T ss_pred --ccce-------eEEEE---ecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEE---eCCCCH
Confidence 0000 00000 011122223333222 346679999999999999999999999998888 999999
Q ss_pred hhHhhHhhhhhcCCceeEEec
Q psy17912 594 QERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~ 614 (779)
.||..++++|+.|+..|||+-
T Consensus 294 ~eR~~il~~Fr~G~~~VLVaT 314 (572)
T PRK04537 294 KKRESLLNRFQKGQLEILVAT 314 (572)
T ss_pred HHHHHHHHHHHcCCCeEEEEe
Confidence 999999999999999999874
No 188
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.71 E-value=2.3e-07 Score=97.03 Aligned_cols=130 Identities=25% Similarity=0.237 Sum_probs=97.5
Q ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc
Q psy17912 147 GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 147 g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 226 (779)
--..|++.|.-++-.+..|+ |+...||=|||++..+|++.+... |..|-|++....||..=++++..+.+
T Consensus 74 ~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 74 LGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp TS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHH
Confidence 34578999999987777776 999999999999999988877665 55789999999999999999999999
Q ss_pred cCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHH-HHHHcCC------cCCCCeeEEEEccchhhh
Q psy17912 227 ATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLI-DYLEQGT------INLHRTSYLVLDEADRML 288 (779)
Q Consensus 227 ~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll-~~l~~~~------~~l~~i~~lViDEaH~l~ 288 (779)
.+|+.+..++.+.+..+..... .++|+++|...|. ++|..+. ...+.+.++||||||.++
T Consensus 144 ~LGlsv~~~~~~~~~~~r~~~Y--~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 144 FLGLSVGIITSDMSSEERREAY--AADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HTT--EEEEETTTEHHHHHHHH--HSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhhccccCccccCHHHHHHHH--hCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 9999999999887653322222 3689999999885 4554322 125678999999999655
No 189
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.69 E-value=1.2e-06 Score=103.65 Aligned_cols=217 Identities=13% Similarity=0.188 Sum_probs=131.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccccccee
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASI 454 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~ 454 (779)
.+.+||.+|++.-+....+.|+..|+.+..+++..+..++..+++...+|+.+++++|+ ++-........+.......
T Consensus 65 ~g~tlVisPl~sL~~dqv~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tP--e~l~~~~~~~~l~~~~l~~ 142 (607)
T PRK11057 65 DGLTLVVSPLISLMKDQVDQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAP--ERLMMDNFLEHLAHWNPAL 142 (607)
T ss_pred CCCEEEEecHHHHHHHHHHHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEECh--HHhcChHHHHHHhhCCCCE
Confidence 46799999999999999999999999999999999999999999999999999999996 2211100000000111122
Q ss_pred EEEEc-CCCC----CHH-HHHHHhccC--CCCCCeEEEEEcChH--HHHHHHHhhhccccceeeccccccHHHHHHhhhh
Q psy17912 455 LVSQY-KESQ----QKR-DRVLNEFRI--GRASILVSHYNKSQQ--ERDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 524 (779)
Q Consensus 455 ~VI~y-~~p~----s~~-~yiQR~GRa--GR~g~~~~~~~~~~~--e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~ 524 (779)
+||+= +.-. +.. +| .+.+.. -.......+++.... .+..++..+......+..+.++.... .
T Consensus 143 iVIDEaH~i~~~G~~fr~~y-~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl-------~ 214 (607)
T PRK11057 143 LAVDEAHCISQWGHDFRPEY-AALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNI-------R 214 (607)
T ss_pred EEEeCccccccccCcccHHH-HHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcc-------e
Confidence 33331 1100 010 11 111111 011233333333322 22333444333333333322221100 0
Q ss_pred hcccccchhhhcccccHHHHHHHHHHh--hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhh
Q psy17912 525 FRIGRASILVSHYNKSQQERDRVLNEF--RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 602 (779)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (779)
+.+. . .....+.+++-. ..+.+.|+||+|++.|+++...|+..|++++.+ ||+.+++||+.++++
T Consensus 215 ~~v~-------~---~~~~~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~---Ha~l~~~~R~~i~~~ 281 (607)
T PRK11057 215 YTLV-------E---KFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAY---HAGLDNDVRADVQEA 281 (607)
T ss_pred eeee-------e---ccchHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEe---cCCCCHHHHHHHHHH
Confidence 0000 0 001112222221 345678999999999999999999999999998 999999999999999
Q ss_pred hhcCCceeEEec
Q psy17912 603 FRIGRASILVSH 614 (779)
Q Consensus 603 ~~~~~~~~~~~~ 614 (779)
|+.|+..|||+.
T Consensus 282 F~~g~~~VLVaT 293 (607)
T PRK11057 282 FQRDDLQIVVAT 293 (607)
T ss_pred HHCCCCCEEEEe
Confidence 999999999873
No 190
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=98.68 E-value=4.1e-07 Score=103.53 Aligned_cols=212 Identities=13% Similarity=0.132 Sum_probs=124.1
Q ss_pred CCcEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c-----ccccccCcc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRN----KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYN-K-----SQQERDRVL 444 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~----~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v-~-----~~GIDip~v 444 (779)
..++||.+||++.+.++++.+.. .++.+..++|+.+..++..++. +..+|||+|+- + ...++...+
T Consensus 73 ~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~----~~~~IlV~Tp~rl~~~~~~~~~~~~~v 148 (434)
T PRK11192 73 PPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFS----ENQDIVVATPGRLLQYIKEENFDCRAV 148 (434)
T ss_pred CceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCcCcccC
Confidence 35799999999999998877654 4788999999999887766654 57789999971 1 122233333
Q ss_pred cccccccceeEEEEc-C--CCCCHHHHHHHhccCCCCCCeEEEEEcChH-H-HHHHHHhhhccccceeeccccccHHHHH
Q psy17912 445 NEFRIGRASILVSQY-K--ESQQKRDRVLNEFRIGRASILVSHYNKSQQ-E-RDRVLNEFRIGRASILVSHYNKSQQERD 519 (779)
Q Consensus 445 ~~~~~~~~~~~VI~y-~--~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~-e-~~~~l~e~~~~~~~il~~~~~~~~~~~~ 519 (779)
. .+|++= + ........+.++-..-+.......++.... + ...+...+......+-.. .....+.
T Consensus 149 ~--------~lViDEah~~l~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~---~~~~~~~ 217 (434)
T PRK11192 149 E--------TLILDEADRMLDMGFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAE---PSRRERK 217 (434)
T ss_pred C--------EEEEECHHHHhCCCcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEec---CCccccc
Confidence 3 344431 1 112222333333222222223333332221 1 122222221111111110 0000000
Q ss_pred HhhhhhcccccchhhhcccccHHHHHHHHHHhh---hcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhH
Q psy17912 520 RVLNEFRIGRASILVSHYNKSQQERDRVLNEFR---IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQER 596 (779)
Q Consensus 520 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (779)
.+.. ..+......++..+|.... .....|+|++|+..++.+...|+..|++++.+ ||+.+|.||
T Consensus 218 ~i~~----------~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l---~g~~~~~~R 284 (434)
T PRK11192 218 KIHQ----------WYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYL---EGEMVQAKR 284 (434)
T ss_pred CceE----------EEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEe---cCCCCHHHH
Confidence 0000 0000111233344444443 24578999999999999999999999999998 999999999
Q ss_pred hhHhhhhhcCCceeEEec
Q psy17912 597 DRVLNEFRIGRASILVSH 614 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~ 614 (779)
..+++.|+.|+..|||+-
T Consensus 285 ~~~l~~f~~G~~~vLVaT 302 (434)
T PRK11192 285 NEAIKRLTDGRVNVLVAT 302 (434)
T ss_pred HHHHHHHhCCCCcEEEEc
Confidence 999999999999999974
No 191
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.67 E-value=2e-06 Score=105.66 Aligned_cols=312 Identities=14% Similarity=0.151 Sum_probs=170.8
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQV 245 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~ 245 (779)
+..+|.=-||||||++....+-.. ... ...|.++||+-++.|-.|+.+.+..+........ ...+..+-.
T Consensus 274 ~~G~IWHtqGSGKTlTm~~~A~~l-~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~Lk 343 (962)
T COG0610 274 KGGYIWHTQGSGKTLTMFKLARLL-LEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSELK 343 (962)
T ss_pred CceEEEeecCCchHHHHHHHHHHH-Hhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHHH
Confidence 458999999999998755444322 222 3578999999999999999999999865433211 233333344
Q ss_pred HHhhcC-CeEEEeChHHHHHHHHcCC--cCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHH
Q psy17912 246 KALQTG-AEIVIATPGRLIDYLEQGT--INLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQK 322 (779)
Q Consensus 246 ~~l~~~-~~IiV~Tpe~Ll~~l~~~~--~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~ 322 (779)
..+..+ ..|+|||.++|-..+.... ..-.+==+||+||||+.-. | ...+.+...-+....++||.|+--.-..
T Consensus 344 ~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~-G---~~~~~~~~~~~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 344 ELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQY-G---ELAKLLKKALKKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhccc-c---HHHHHHHHHhccceEEEeeCCccccccc
Confidence 445433 4899999999988876541 1122223789999998442 2 2233334334558899999996221111
Q ss_pred H-HHHhccCcEEEecCCCC---CCCccceEEEEE----ecccc--------------------c--------------hh
Q psy17912 323 L-AEDFLVDYVQLNIGSLN---PTANHNIVQIVD----VCQEH--------------------E--------------KD 360 (779)
Q Consensus 323 l-~~~~l~~~~~i~i~~~~---~~~~~~i~~~~~----~~~~~--------------------~--------------k~ 360 (779)
. ......+++....-... ..+. .+..... ..... . ..
T Consensus 420 ~tt~~~fg~ylh~Y~i~daI~Dg~vl-~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 498 (962)
T COG0610 420 DTTKDVFGDYLHTYTITDAIRDGAVL-PVYYENRVELELIEESIKEEAEELDERIEEITEDILEKIKKKTKNLEFLAMLA 498 (962)
T ss_pred cchhhhhcceeEEEecchhhccCcee-eEEEeecccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHhhhhHHhcch
Confidence 1 11222222222111000 0000 0000000 00000 0 00
Q ss_pred HHHHH----HHHHhc--cCCCCcEEEEecchhHHHHHHHHHHhCC-------------------Ce----EEEEcCCCCH
Q psy17912 361 YKLQG----LLSQIG--SERTSKTIIFVETKRKADDITRSVRNKG-------------------WA----AVAIHGNKSQ 411 (779)
Q Consensus 361 ~~L~~----ll~~i~--~~~~~kvLVF~~s~~~ae~L~~~L~~~g-------------------~~----v~~ihg~~~~ 411 (779)
..+.. +...+. .....++++.|.++..+..+++...... +. ....|.. ..
T Consensus 499 ~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~ 577 (962)
T COG0610 499 VRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNTEFETDFDKKQSHAK-LK 577 (962)
T ss_pred HHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHhhcccchhhhhhhHH-HH
Confidence 00111 111111 2245678888888886666555543210 00 0000111 22
Q ss_pred HHHHHHHHHH--hcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC----CeE--E
Q psy17912 412 QERDRVLNEF--RIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS----ILV--S 483 (779)
Q Consensus 412 ~eR~~il~~F--~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g----~~~--~ 483 (779)
..+......| +....++||.++.+=+|.|.|.++ .+-.|-|.-.-.++|-+-|++|.- ..| +
T Consensus 578 ~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~----------TmYvDK~Lk~H~L~QAisRtNR~~~~~K~~G~IV 647 (962)
T COG0610 578 DEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLN----------TLYVDKPLKYHNLIQAISRTNRVFPGKKKFGLIV 647 (962)
T ss_pred HHHhhhhhhhcCcCCCCCEEEEEccccccCCccccc----------eEEeccccccchHHHHHHHhccCCCCCCCCcEEE
Confidence 3333444443 456899999999999999999875 344477777888999999999963 223 3
Q ss_pred EEEcChHHHHHHHHhhhccc
Q psy17912 484 HYNKSQQERDRVLNEFRIGR 503 (779)
Q Consensus 484 ~~~~~~~e~~~~l~e~~~~~ 503 (779)
.|....++-...+..|....
T Consensus 648 Df~gl~e~l~~Al~~Y~~~~ 667 (962)
T COG0610 648 DFRGLKEALKKALKLYSNEG 667 (962)
T ss_pred ECcchHHHHHHHHHHhhccc
Confidence 33333334455666665544
No 192
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.64 E-value=1.1e-06 Score=106.20 Aligned_cols=220 Identities=14% Similarity=0.143 Sum_probs=131.1
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc--CCCcEEEEeccc-cc-c--cccC-ccccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRI--GRASILVSQYNK-SQ-Q--ERDR-VLNEF 447 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~--G~~~ILVAT~v~-~~-G--IDip-~v~~~ 447 (779)
.+.+||.+|++..+..-...|...++.+..+.++++..++..++..+.. |+.+||++|+-- .. . ++.. .+.
T Consensus 500 ~GiTLVISPLiSLmqDQV~~L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~-- 577 (1195)
T PLN03137 500 PGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLN-- 577 (1195)
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhh--
Confidence 4679999999999986667777889999999999999999999999887 899999999821 11 0 1100 000
Q ss_pred ccccceeEEEEc-CCC----CCH-HHHHHHhc--cCCCCCCeEEEEEc--ChHHHHHHHHhhhccccceeeccccccHHH
Q psy17912 448 RIGRASILVSQY-KES----QQK-RDRVLNEF--RIGRASILVSHYNK--SQQERDRVLNEFRIGRASILVSHYNKSQQE 517 (779)
Q Consensus 448 ~~~~~~~~VI~y-~~p----~s~-~~yiQR~G--RaGR~g~~~~~~~~--~~~e~~~~l~e~~~~~~~il~~~~~~~~~~ 517 (779)
.......+||+= +.- .+. .+|. ++| +..-......+++. ...-+..+...+.+....++...++...
T Consensus 578 ~~~~LslIVIDEAHcVSqWGhDFRpdYr-~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpN-- 654 (1195)
T PLN03137 578 SRGLLARFVIDEAHCVSQWGHDFRPDYQ-GLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPN-- 654 (1195)
T ss_pred hccccceeccCcchhhhhcccchHHHHH-HHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccc--
Confidence 001111233321 100 011 1221 111 11011223333332 2222333444444333333222222110
Q ss_pred HHHhhhhhcccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHh
Q psy17912 518 RDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERD 597 (779)
Q Consensus 518 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (779)
+ .|.+... .....++..+.+.+-..+.+.||||.|.+.|+++...|+..|+.++.+ ||+.+++||.
T Consensus 655 ---L--~y~Vv~k------~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~Y---HAGLs~eeR~ 720 (1195)
T PLN03137 655 ---L--WYSVVPK------TKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFY---HGSMDPAQRA 720 (1195)
T ss_pred ---e--EEEEecc------chhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeee---eCCCCHHHHH
Confidence 0 0000000 000112333333333345578999999999999999999999999998 9999999999
Q ss_pred hHhhhhhcCCceeEEe
Q psy17912 598 RVLNEFRIGRASILVS 613 (779)
Q Consensus 598 ~~~~~~~~~~~~~~~~ 613 (779)
.|+++|+.|+..|||+
T Consensus 721 ~vqe~F~~Gei~VLVA 736 (1195)
T PLN03137 721 FVQKQWSKDEINIICA 736 (1195)
T ss_pred HHHHHHhcCCCcEEEE
Confidence 9999999999999986
No 193
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=98.64 E-value=7.6e-07 Score=106.44 Aligned_cols=213 Identities=17% Similarity=0.237 Sum_probs=127.0
Q ss_pred CCCcEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc-ccccccCcccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRN----KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK-SQQERDRVLNEFR 448 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~----~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~-~~GIDip~v~~~~ 448 (779)
.+.+++|.+||+.-|.+.++.|++ .++.+..+||+++..+|..+++.+.+|+..|+|+|... ...+.+..+.
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~--- 385 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLG--- 385 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccc---
Confidence 467899999999999988888765 36899999999999999999999999999999999743 3334444444
Q ss_pred cccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccccceeeccccccHHHHHHhhhhhccc
Q psy17912 449 IGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIG 528 (779)
Q Consensus 449 ~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 528 (779)
.+||+=..-....++..-. ..+. ......++..+..+...+..+..-..+++. . ...+
T Consensus 386 -----lvVIDE~Hrfg~~qr~~l~-~~~~-~~~iL~~SATp~prtl~~~~~g~~~~s~i~-~--------------~p~~ 443 (681)
T PRK10917 386 -----LVIIDEQHRFGVEQRLALR-EKGE-NPHVLVMTATPIPRTLAMTAYGDLDVSVID-E--------------LPPG 443 (681)
T ss_pred -----eEEEechhhhhHHHHHHHH-hcCC-CCCEEEEeCCCCHHHHHHHHcCCCceEEEe-c--------------CCCC
Confidence 2344311111111111000 0111 122233333322222222222111111110 0 0111
Q ss_pred ccchhhhcc--cccHHHHHHHHHHhhhcceEEEEecc--------cchhhHHHHHHhhc--CccceeEeeeccchhhhhH
Q psy17912 529 RASILVSHY--NKSQQERDRVLNEFRIGRASILVSHY--------NKSQQERDRVLNEF--RIGRASILVSHYNKSQQER 596 (779)
Q Consensus 529 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 596 (779)
+..+..... +....-.+.+.++...|...++||++ .+++.++.+.|... +++...+ ||+.+++||
T Consensus 444 r~~i~~~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~l---HG~m~~~eR 520 (681)
T PRK10917 444 RKPITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLL---HGRMKPAEK 520 (681)
T ss_pred CCCcEEEEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEE---eCCCCHHHH
Confidence 111111111 11122234456666788889999984 44566777777765 3455555 999999999
Q ss_pred hhHhhhhhcCCceeEEec
Q psy17912 597 DRVLNEFRIGRASILVSH 614 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~ 614 (779)
+.|+++|+.|+..||||-
T Consensus 521 ~~i~~~F~~g~~~ILVaT 538 (681)
T PRK10917 521 DAVMAAFKAGEIDILVAT 538 (681)
T ss_pred HHHHHHHHcCCCCEEEEC
Confidence 999999999999999884
No 194
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=98.62 E-value=5.9e-07 Score=104.23 Aligned_cols=57 Identities=19% Similarity=0.300 Sum_probs=53.2
Q ss_pred ceEEEEecccchhhHHHHHHhh-cCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 555 RASILVSHYNKSQQERDRVLNE-FRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
...|+|++|+..++.+.+.|+. .|+.++++ ||+++|+||+.++++|+.|+.+|||+-
T Consensus 368 ~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~---Hg~~~~~eR~~il~~Fr~G~~~ILVaT 425 (518)
T PLN00206 368 PPAVVFVSSRLGADLLANAITVVTGLKALSI---HGEKSMKERREVMKSFLVGEVPVIVAT 425 (518)
T ss_pred CCEEEEcCCchhHHHHHHHHhhccCcceEEe---eCCCCHHHHHHHHHHHHCCCCCEEEEe
Confidence 3689999999999999999975 79999999 999999999999999999999999984
No 195
>KOG0952|consensus
Probab=98.60 E-value=1.5e-08 Score=118.35 Aligned_cols=132 Identities=23% Similarity=0.233 Sum_probs=102.1
Q ss_pred CCCHHHHHHHHHHh-cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 150 APTAIQAQGWPIAL-SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 150 ~p~~~Q~~~i~~il-~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
.+.|.|.+.+-.+. ...+.++.+|||+|||++|.+.++..+...+ +.++++++|..+|+..-.+.+.......
T Consensus 927 ~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p------~~kvvyIap~kalvker~~Dw~~r~~~~ 1000 (1230)
T KOG0952|consen 927 YFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSYYP------GSKVVYIAPDKALVKERSDDWSKRDELP 1000 (1230)
T ss_pred ccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhccCC------CccEEEEcCCchhhcccccchhhhcccC
Confidence 55667777665443 3457899999999999999999887766543 4589999999999998777776665555
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHc--CCcCCCCeeEEEEccchhhhcC
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQ--GTINLHRTSYLVLDEADRMLDM 290 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~--~~~~l~~i~~lViDEaH~l~~~ 290 (779)
|++++.+.|+.... ...+. ..+|+|+||++.-....+ ....+++++.+|+||.|++.+.
T Consensus 1001 g~k~ie~tgd~~pd--~~~v~-~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1001 GIKVIELTGDVTPD--VKAVR-EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred CceeEeccCccCCC--hhhee-cCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 99999999887664 22332 369999999998877763 4456889999999999986654
No 196
>KOG0330|consensus
Probab=98.59 E-value=1.8e-06 Score=91.57 Aligned_cols=257 Identities=22% Similarity=0.261 Sum_probs=147.3
Q ss_pred HHHHHHHHhccC-CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q psy17912 362 KLQGLLSQIGSE-RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKS 436 (779)
Q Consensus 362 ~L~~ll~~i~~~-~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~ 436 (779)
.+.-++..+..+ ....++|.+||++-|.++++.+... |..+..+-||++...+...+. .+..|||||+ +
T Consensus 115 faLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~----kkPhilVaTP--G 188 (476)
T KOG0330|consen 115 FALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLS----KKPHILVATP--G 188 (476)
T ss_pred hHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhh----cCCCEEEeCc--H
Confidence 344455554433 3467999999999999999999865 688999999999876655544 4788999998 4
Q ss_pred cccccCc-ccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcC-hHHHHHHHHhhhccccceeecccc--
Q psy17912 437 QQERDRV-LNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKS-QQERDRVLNEFRIGRASILVSHYN-- 512 (779)
Q Consensus 437 ~GIDip~-v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~-~~e~~~~l~e~~~~~~~il~~~~~-- 512 (779)
+-.|--. ...|++...-++|.+-.. .+..+. .++-+.++..+...+.-++++-.=
T Consensus 189 rL~dhl~~Tkgf~le~lk~LVlDEAD---------------------rlLd~dF~~~ld~ILk~ip~erqt~LfsATMt~ 247 (476)
T KOG0330|consen 189 RLWDHLENTKGFSLEQLKFLVLDEAD---------------------RLLDMDFEEELDYILKVIPRERQTFLFSATMTK 247 (476)
T ss_pred HHHHHHHhccCccHHHhHHHhhchHH---------------------hhhhhhhHHHHHHHHHhcCccceEEEEEeecch
Confidence 4443111 112223332233332100 000000 011122333333333333333210
Q ss_pred c-cHHHHHHhhhhhcccccc--hhhhccc--------cc-HHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCcc
Q psy17912 513 K-SQQERDRVLNEFRIGRAS--ILVSHYN--------KS-QQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIG 580 (779)
Q Consensus 513 ~-~~~~~~~~l~~~~~~~~~--~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (779)
+ ....+..+-+...+...+ ..+.|-. ++ ...-=.+|+ -..|.+.|+||+|.-..+-+--+||..|+-
T Consensus 248 kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~-e~~g~s~iVF~~t~~tt~~la~~L~~lg~~ 326 (476)
T KOG0330|consen 248 KVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLN-ELAGNSVIVFCNTCNTTRFLALLLRNLGFQ 326 (476)
T ss_pred hhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHH-hhcCCcEEEEEeccchHHHHHHHHHhcCcc
Confidence 0 011111111111111110 1111100 00 011122555 456799999999999999999999999999
Q ss_pred ceeEeeeccchhhhhHhhHhhhhhcCCceeEEec-----------------cccchhHHh---hhhhhhcccc---eeEE
Q psy17912 581 RASILVSHYNKSQQERDRVLNEFRIGRASILVSH-----------------YNKSQQERD---RVLNEFRIGR---ASIL 637 (779)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~---~~~~~~~~~~---~~~~ 637 (779)
++.+ ||+-+|.-|--.||.|+.|..+|||+- |.-.-.-.| ||=.--|.|| +-=|
T Consensus 327 a~~L---hGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~Itl 403 (476)
T KOG0330|consen 327 AIPL---HGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITL 403 (476)
T ss_pred eecc---cchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEE
Confidence 9999 999999999999999999999999874 332223333 2222223333 3347
Q ss_pred eeccccchhHHh
Q psy17912 638 VSHYNKSQQERD 649 (779)
Q Consensus 638 ~~~~~~~~~~~~ 649 (779)
||||.-+.-.|-
T Consensus 404 VtqyDve~~qrI 415 (476)
T KOG0330|consen 404 VTQYDVELVQRI 415 (476)
T ss_pred EehhhhHHHHHH
Confidence 888887765554
No 197
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=98.56 E-value=2e-06 Score=99.01 Aligned_cols=218 Identities=12% Similarity=0.160 Sum_probs=119.4
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIG 450 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~ 450 (779)
..++||.+||++.+.++++.++.. ++.+..++|+.+...+. +.+..+..+|||+|+ ++=++...-....+.
T Consensus 162 ~~~aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~---~~~~~~~~~Iiv~TP--~~Ll~~~~~~~~~l~ 236 (475)
T PRK01297 162 EPRALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQL---KQLEARFCDILVATP--GRLLDFNQRGEVHLD 236 (475)
T ss_pred CceEEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHH---HHHhCCCCCEEEECH--HHHHHHHHcCCcccc
Confidence 457999999999999988887753 67899999998765543 344457789999997 222221111111122
Q ss_pred cceeEEEEc-CC--CCCHHHHHHHh-ccCCCCC-CeEEEEEcC-hHHHHHHHHhhhccccceeeccccccHHHHHHhhhh
Q psy17912 451 RASILVSQY-KE--SQQKRDRVLNE-FRIGRAS-ILVSHYNKS-QQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 524 (779)
Q Consensus 451 ~~~~~VI~y-~~--p~s~~~yiQR~-GRaGR~g-~~~~~~~~~-~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~ 524 (779)
....+||+= +. .......+.++ -.....+ ....+++.. ..+-......+......+.+...+
T Consensus 237 ~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~------------ 304 (475)
T PRK01297 237 MVEVMVLDEADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPEN------------ 304 (475)
T ss_pred cCceEEechHHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCc------------
Confidence 223344431 10 00110001111 1111111 122233222 122223333332221111000000
Q ss_pred hcccccchhhhcccccHHHHHHHHHHh---hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhh
Q psy17912 525 FRIGRASILVSHYNKSQQERDRVLNEF---RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLN 601 (779)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (779)
.....+....+.....++-..|..+ ......|+|+++.+.++.+.+.|+..|+.+..+ ||+.+|+||..+++
T Consensus 305 --~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~---~g~~~~~~R~~~~~ 379 (475)
T PRK01297 305 --VASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQL---SGDVPQHKRIKTLE 379 (475)
T ss_pred --CCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEE---ECCCCHHHHHHHHH
Confidence 0000000000001111222222222 123479999999999999999999999999888 99999999999999
Q ss_pred hhhcCCceeEEec
Q psy17912 602 EFRIGRASILVSH 614 (779)
Q Consensus 602 ~~~~~~~~~~~~~ 614 (779)
+|+.|+..|||+-
T Consensus 380 ~Fr~G~~~vLvaT 392 (475)
T PRK01297 380 GFREGKIRVLVAT 392 (475)
T ss_pred HHhCCCCcEEEEc
Confidence 9999999999985
No 198
>KOG0338|consensus
Probab=98.55 E-value=8.1e-07 Score=96.81 Aligned_cols=229 Identities=19% Similarity=0.264 Sum_probs=148.4
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccc-cCcccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQER-DRVLNEFR 448 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GID-ip~v~~~~ 448 (779)
...+|||.|||++.+-+++...++. .+.++..-||++-..++.+++ ..-+|+|||+ ++-|| +.+.-.|.
T Consensus 251 ~~TRVLVL~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LR----s~PDIVIATP--GRlIDHlrNs~sf~ 324 (691)
T KOG0338|consen 251 AATRVLVLVPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLR----SRPDIVIATP--GRLIDHLRNSPSFN 324 (691)
T ss_pred cceeEEEEeccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHh----hCCCEEEecc--hhHHHHhccCCCcc
Confidence 4568999999999999888877653 588999999999999999987 4678999999 88886 22222233
Q ss_pred cccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccccceeeccccccHH----------HH
Q psy17912 449 IGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQ----------ER 518 (779)
Q Consensus 449 ~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~~~~~~----------~~ 518 (779)
+...-++|.+ |.+++|+++...++.-++..-.+..+ +.
T Consensus 325 ldsiEVLvlD--------------------------------EADRMLeegFademnEii~lcpk~RQTmLFSATMteeV 372 (691)
T KOG0338|consen 325 LDSIEVLVLD--------------------------------EADRMLEEGFADEMNEIIRLCPKNRQTMLFSATMTEEV 372 (691)
T ss_pred ccceeEEEec--------------------------------hHHHHHHHHHHHHHHHHHHhccccccceeehhhhHHHH
Confidence 3333333333 55555555555444333322111111 11
Q ss_pred HHhhhhhccccc-chhhhccc-----ccHH----------HHHHHHHH---hhhcceEEEEecccchhhHHHHHHhhcCc
Q psy17912 519 DRVLNEFRIGRA-SILVSHYN-----KSQQ----------ERDRVLNE---FRIGRASILVSHYNKSQQERDRVLNEFRI 579 (779)
Q Consensus 519 ~~~l~~~~~~~~-~~~~~~~~-----~~~~----------~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 579 (779)
+.+ ....+.++ .++++... .+|+ +|..+|-+ =..-...|+|..||+.|.-+.=.|--.|.
T Consensus 373 kdL-~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl 451 (691)
T KOG0338|consen 373 KDL-ASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGL 451 (691)
T ss_pred HHH-HHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhc
Confidence 111 11122211 12222211 1122 23332211 11233688999999999999888999999
Q ss_pred cceeEeeeccchhhhhHhhHhhhhhcCCceeEEec-----------------ccc---chhHHhhhhhhhcccceeEEee
Q psy17912 580 GRASILVSHYNKSQQERDRVLNEFRIGRASILVSH-----------------YNK---SQQERDRVLNEFRIGRASILVS 639 (779)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~---~~~~~~~~~~~~~~~~~~~~~~ 639 (779)
-+.-+ ||+-+|+.|=.+|+.||.+..++||+. |+- -.+---||=.--|-||+..-||
T Consensus 452 ~agEl---HGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAGRaGrsVt 528 (691)
T KOG0338|consen 452 KAGEL---HGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAGRAGRSVT 528 (691)
T ss_pred hhhhh---cccccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcccCcceEE
Confidence 99999 999999999999999999999999874 221 1233456667778888888888
Q ss_pred ccccc
Q psy17912 640 HYNKS 644 (779)
Q Consensus 640 ~~~~~ 644 (779)
--..+
T Consensus 529 lvgE~ 533 (691)
T KOG0338|consen 529 LVGES 533 (691)
T ss_pred Eeccc
Confidence 76655
No 199
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.52 E-value=3.9e-06 Score=95.98 Aligned_cols=217 Identities=17% Similarity=0.201 Sum_probs=147.7
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccccccee
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASI 454 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~ 454 (779)
.+.+||..|-..-.+.=.+.|...|+.+.++++.++.++|..++..+..|++++|.-++ ++-.+-...+.........
T Consensus 57 ~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisP--Erl~~~~f~~~L~~~~i~l 134 (590)
T COG0514 57 EGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISP--ERLMSPRFLELLKRLPISL 134 (590)
T ss_pred CCCEEEECchHHHHHHHHHHHHHcCceeehhhcccCHHHHHHHHHHHhcCceeEEEECc--hhhcChHHHHHHHhCCCce
Confidence 56899999999999988999999999999999999999999999999999999998886 3333211111111122222
Q ss_pred EEEE-------cC--CCCCHHHHHHHhccCCCCCCeEEEE--EcChHHHHHHHHhhhccccceeeccccccHHHHHHhhh
Q psy17912 455 LVSQ-------YK--ESQQKRDRVLNEFRIGRASILVSHY--NKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLN 523 (779)
Q Consensus 455 ~VI~-------y~--~p~s~~~yiQR~GRaGR~g~~~~~~--~~~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~ 523 (779)
+||+ ++ .--++..+-+-..+-. .....++ +..+.-+.++...+.+....+++..++.....-+-+.
T Consensus 135 ~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~--~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~- 211 (590)
T COG0514 135 VAIDEAHCISQWGHDFRPDYRRLGRLRAGLP--NPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVE- 211 (590)
T ss_pred EEechHHHHhhcCCccCHhHHHHHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhh-
Confidence 4443 22 2222222222222222 2334444 3344445667777777776666666654442221110
Q ss_pred hhcccccchhhhcccccHHHHHHHHHH--hhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhh
Q psy17912 524 EFRIGRASILVSHYNKSQQERDRVLNE--FRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLN 601 (779)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (779)
..+...+.. -+.+ .+.+.+-||.|.|+|.+.++...|++.|+.++.- |++-+-+||..|-+
T Consensus 212 -------------~~~~~~q~~-fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~Y---HaGl~~~eR~~~q~ 274 (590)
T COG0514 212 -------------KGEPSDQLA-FLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAY---HAGLSNEERERVQQ 274 (590)
T ss_pred -------------cccHHHHHH-HHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEe---cCCCCHHHHHHHHH
Confidence 001111222 3443 5556678999999999999999999999999999 99999999999999
Q ss_pred hhhcCCceeEEe
Q psy17912 602 EFRIGRASILVS 613 (779)
Q Consensus 602 ~~~~~~~~~~~~ 613 (779)
.|..+..+|||.
T Consensus 275 ~f~~~~~~iiVA 286 (590)
T COG0514 275 AFLNDEIKVMVA 286 (590)
T ss_pred HHhcCCCcEEEE
Confidence 999999999986
No 200
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=98.46 E-value=4.2e-06 Score=99.36 Aligned_cols=214 Identities=19% Similarity=0.216 Sum_probs=124.8
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccc-ccccCcccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQ-QERDRVLNEFR 448 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~-GIDip~v~~~~ 448 (779)
.+.+++|.+||+.-|.+.++.+++. ++++..+||+++..+|..+++...+|+.+|+|+|..+-. .+.+..+.
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~--- 359 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLA--- 359 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccc---
Confidence 4678999999999999998887753 789999999999999999999999999999999984422 23333333
Q ss_pred cccceeEEEEcCCCCCHHHH--HHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccccceeeccccccHHHHHHhhhhhc
Q psy17912 449 IGRASILVSQYKESQQKRDR--VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR 526 (779)
Q Consensus 449 ~~~~~~~VI~y~~p~s~~~y--iQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~ 526 (779)
.+||+=..-....+. +...|..+ ......+++.....+...+..+..-..+++ ....
T Consensus 360 -----lvVIDEaH~fg~~qr~~l~~~~~~~-~~~~~l~~SATp~prtl~l~~~~~l~~~~i---------------~~~p 418 (630)
T TIGR00643 360 -----LVIIDEQHRFGVEQRKKLREKGQGG-FTPHVLVMSATPIPRTLALTVYGDLDTSII---------------DELP 418 (630)
T ss_pred -----eEEEechhhccHHHHHHHHHhcccC-CCCCEEEEeCCCCcHHHHHHhcCCcceeee---------------ccCC
Confidence 244432111111111 11122211 011223333332222111111111000000 0001
Q ss_pred ccccchhhhcccc--cHHHHHHHHHHhhhcceEEEEeccc--------chhhHHHHHHhhc--CccceeEeeeccchhhh
Q psy17912 527 IGRASILVSHYNK--SQQERDRVLNEFRIGRASILVSHYN--------KSQQERDRVLNEF--RIGRASILVSHYNKSQQ 594 (779)
Q Consensus 527 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 594 (779)
.++..+....... ...-.+.+.++...|...++|+++. +.+.++.+.|.+. +++...+ ||+-++.
T Consensus 419 ~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~l---HG~m~~~ 495 (630)
T TIGR00643 419 PGRKPITTVLIKHDEKDIVYEFIEEEIAKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLL---HGRMKSD 495 (630)
T ss_pred CCCCceEEEEeCcchHHHHHHHHHHHHHhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEE---eCCCCHH
Confidence 1111111111111 1122333555667788889998864 4556666777653 4444455 9999999
Q ss_pred hHhhHhhhhhcCCceeEEec
Q psy17912 595 ERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~ 614 (779)
||+.|+++|+.|+..||||-
T Consensus 496 eR~~i~~~F~~g~~~ILVaT 515 (630)
T TIGR00643 496 EKEAVMEEFREGEVDILVAT 515 (630)
T ss_pred HHHHHHHHHHcCCCCEEEEC
Confidence 99999999999999999984
No 201
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.44 E-value=4.2e-06 Score=100.21 Aligned_cols=66 Identities=20% Similarity=0.145 Sum_probs=56.0
Q ss_pred CCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccc
Q psy17912 251 GAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 251 ~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~ 316 (779)
...|+++||..|..-+..+.+.+..++.|||||||++....-...+..+.+.-.+..-+.+|||.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP 72 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNP 72 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCC
Confidence 358999999999888888999999999999999999987766666777777767777899999983
No 202
>PRK14701 reverse gyrase; Provisional
Probab=98.39 E-value=7e-06 Score=104.98 Aligned_cols=221 Identities=15% Similarity=0.223 Sum_probs=123.7
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccccc-Ccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK------GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERD-RVLNE 446 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~------g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDi-p~v~~ 446 (779)
.+.++||.+||+..+.++++.|+.. ++.+..+||+++..++.++++.+++|+.+|||+|+- +-.+. ...
T Consensus 121 ~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPg--rL~~~~~~l-- 196 (1638)
T PRK14701 121 KGKKCYIILPTTLLVKQTVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQ--FLARNFPEM-- 196 (1638)
T ss_pred cCCeEEEEECHHHHHHHHHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCc--hhHHhHHHH--
Confidence 4568999999999999999999862 467889999999999999999999999999999983 22221 100
Q ss_pred cccccceeEEEE-cCCC--------------CCHHHHHHHhccC---CCCCCeEEEEEcChHHHHHHHHh----hhcccc
Q psy17912 447 FRIGRASILVSQ-YKES--------------QQKRDRVLNEFRI---GRASILVSHYNKSQQERDRVLNE----FRIGRA 504 (779)
Q Consensus 447 ~~~~~~~~~VI~-y~~p--------------~s~~~yiQR~GRa---GR~g~~~~~~~~~~~e~~~~l~e----~~~~~~ 504 (779)
.. .....+|++ -|.- .-..++.+.+-+. +..+. .....+...-+.+ +...+.
T Consensus 197 ~~-~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~~~il~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~ 270 (1638)
T PRK14701 197 KH-LKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKAWKIIYLKKQGN-----IEDAMEKREILNKEIEKIGNKIG 270 (1638)
T ss_pred hh-CCCCEEEEECceeccccccccchhhhcCCChHHHHHHHHHhhhcccccc-----cchhhhhhhhhhhhhhhcCCCcc
Confidence 00 111223332 1111 0011222211100 00000 0000011111111 100111
Q ss_pred -ceeeccccccHHHHHHhhhh---hcccccchhh---hc-cc-ccHH---HHHHHHHHhhhcceEEEEecccchh---hH
Q psy17912 505 -SILVSHYNKSQQERDRVLNE---FRIGRASILV---SH-YN-KSQQ---ERDRVLNEFRIGRASILVSHYNKSQ---QE 569 (779)
Q Consensus 505 -~il~~~~~~~~~~~~~~l~~---~~~~~~~~~~---~~-~~-~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~---~~ 569 (779)
.++.+-.-+....+..++.. +.++...... .+ |. .... +.-+++... |...|+|++|++.+ ++
T Consensus 271 ~ll~~SAT~~~r~~~~~l~~~~l~f~v~~~~~~lr~i~~~yi~~~~~~k~~L~~ll~~~--g~~gIVF~~t~~~~e~ae~ 348 (1638)
T PRK14701 271 CLIVASATGKAKGDRVKLYRELLGFEVGSGRSALRNIVDVYLNPEKIIKEHVRELLKKL--GKGGLIFVPIDEGAEKAEE 348 (1638)
T ss_pred EEEEEecCCCchhHHHHHhhcCeEEEecCCCCCCCCcEEEEEECCHHHHHHHHHHHHhC--CCCeEEEEeccccchHHHH
Confidence 12223222221122222221 2333322111 11 11 1122 222344443 56789999999975 89
Q ss_pred HHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 570 RDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...|++.|+++..+ ||+ |+.+|++|+.|+..|||+-
T Consensus 349 la~~L~~~Gi~a~~~---h~~-----R~~~l~~F~~G~~~VLVaT 385 (1638)
T PRK14701 349 IEKYLLEDGFKIELV---SAK-----NKKGFDLFEEGEIDYLIGV 385 (1638)
T ss_pred HHHHHHHCCCeEEEe---cch-----HHHHHHHHHcCCCCEEEEe
Confidence 999999999999999 994 9999999999999999975
No 203
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=98.34 E-value=9e-06 Score=97.91 Aligned_cols=243 Identities=12% Similarity=0.082 Sum_probs=128.3
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-cccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK---GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY-NKSQ 437 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~---g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~-v~~~ 437 (779)
.+.-++..+...+..++|+.+|+++.+.+..+.|+.. ++.+..++|+.+.++|..+. ...+|+|+|+ .+..
T Consensus 68 ~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~-----~~~~IivtTPd~L~~ 142 (742)
T TIGR03817 68 YQLPVLSALADDPRATALYLAPTKALAADQLRAVRELTLRGVRPATYDGDTPTEERRWAR-----EHARYVLTNPDMLHR 142 (742)
T ss_pred HHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHh-----cCCCEEEEChHHHHH
Confidence 3344455554445678999999999999999988875 57889999999988775443 2478999997 2222
Q ss_pred ccccCccc-ccccccceeEEEEc-CC-----CCCHHHHHHHhccCCC-CC--CeEEEEEcChHHHHHHHHhhhcccccee
Q psy17912 438 QERDRVLN-EFRIGRASILVSQY-KE-----SQQKRDRVLNEFRIGR-AS--ILVSHYNKSQQERDRVLNEFRIGRASIL 507 (779)
Q Consensus 438 GIDip~v~-~~~~~~~~~~VI~y-~~-----p~s~~~yiQR~GRaGR-~g--~~~~~~~~~~~e~~~~l~e~~~~~~~il 507 (779)
++-....+ ...+...-++|++= +. -..+...+.|.-|.-+ .| ....+++..-.+.......+ .+....+
T Consensus 143 ~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l-~g~~~~~ 221 (742)
T TIGR03817 143 GILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRL-IGAPVVA 221 (742)
T ss_pred hhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHH-cCCCeEE
Confidence 22000000 00012222344441 11 1123334444333211 12 12222222211222233332 2222122
Q ss_pred eccccccHHHHHHhh-hhh--cccccchhhhcccccHHHHH-HHHHHhhhcceEEEEecccchhhHHHHHHhhc------
Q psy17912 508 VSHYNKSQQERDRVL-NEF--RIGRASILVSHYNKSQQERD-RVLNEFRIGRASILVSHYNKSQQERDRVLNEF------ 577 (779)
Q Consensus 508 ~~~~~~~~~~~~~~l-~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 577 (779)
+..-......+...+ +.. ......- .........+.. .+.+-.+.+...|+|++|++.++.+.+.|++.
T Consensus 222 i~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~r~~~~~~~~~~l~~l~~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~ 300 (742)
T TIGR03817 222 VTEDGSPRGARTVALWEPPLTELTGENG-APVRRSASAEAADLLADLVAEGARTLTFVRSRRGAELVAAIARRLLGEVDP 300 (742)
T ss_pred ECCCCCCcCceEEEEecCCccccccccc-cccccchHHHHHHHHHHHHHCCCCEEEEcCCHHHHHHHHHHHHHHHHhhcc
Confidence 211110000000000 000 0000000 000001112333 34444466789999999999999999998874
Q ss_pred --CccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 578 --RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 578 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+.+..++ ||+.+|+||..+++.|++|+..+||+-
T Consensus 301 ~l~~~v~~~---hgg~~~~eR~~ie~~f~~G~i~vLVaT 336 (742)
T TIGR03817 301 DLAERVAAY---RAGYLPEDRRELERALRDGELLGVATT 336 (742)
T ss_pred ccccchhhe---ecCCCHHHHHHHHHHHHcCCceEEEEC
Confidence 4444455 999999999999999999999999884
No 204
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.31 E-value=6.4e-06 Score=98.84 Aligned_cols=143 Identities=17% Similarity=0.234 Sum_probs=86.7
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHH---------HhcccCCceEEEEe
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAN---------DFGSATATRVACVF 236 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~---------~~~~~~~l~v~~~~ 236 (779)
.++.+.++||+|||.+|+-.++....... ..+.||+||+.++-+.+...+. .......+....+.
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~------~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG------LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC------CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 37899999999999999888876655432 3479999999999887765543 11112234444444
Q ss_pred CCC-------CChhhHHHhhc-------CCeEEEeChHHHHHHHH-cC---------C-cC---CCCe-eEEEEccchhh
Q psy17912 237 GGA-------PKGPQVKALQT-------GAEIVIATPGRLIDYLE-QG---------T-IN---LHRT-SYLVLDEADRM 287 (779)
Q Consensus 237 gg~-------~~~~~~~~l~~-------~~~IiV~Tpe~Ll~~l~-~~---------~-~~---l~~i-~~lViDEaH~l 287 (779)
+.. ......+.... ...|+|+|.+.|..-.. .. . .. +... -+||+||.|++
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 332 11222222221 46899999988865221 00 0 11 1112 37999999997
Q ss_pred hcCCchHHHHHHHhhcCCCCceEEeeccccH
Q psy17912 288 LDMGFEPQIRKIIGQIRPDRQVLMWSATWPK 318 (779)
Q Consensus 288 ~~~~f~~~l~~il~~l~~~~qilllSAT~~~ 318 (779)
... ...+..| ..+.|.. ++.+|||.+.
T Consensus 214 ~~~--~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 214 PRD--NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred Ccc--hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 542 2233333 5555544 5669999986
No 205
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=98.30 E-value=2e-05 Score=98.76 Aligned_cols=222 Identities=13% Similarity=0.207 Sum_probs=123.0
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCe---EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWA---AVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNE 446 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~---v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~ 446 (779)
.+.++||.+||+..+.++++.|... ++. +..+||+++..++...++.+.+|..+|||+|+- +-.+... .
T Consensus 120 ~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~--rL~~~~~-~- 195 (1171)
T TIGR01054 120 KGKRCYIILPTTLLVIQVAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTM--FLSKNYD-E- 195 (1171)
T ss_pred cCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHH--HHHHHHH-H-
Confidence 4678999999999999999988763 333 346899999999999999999999999999982 2222100 0
Q ss_pred cccccceeEEEEc-CC----CCCHHHHHHHhc-------------cCCCCCCeEEEEEcChHHHHHHHHhhhccccc-ee
Q psy17912 447 FRIGRASILVSQY-KE----SQQKRDRVLNEF-------------RIGRASILVSHYNKSQQERDRVLNEFRIGRAS-IL 507 (779)
Q Consensus 447 ~~~~~~~~~VI~y-~~----p~s~~~yiQR~G-------------RaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~-il 507 (779)
... ....+|++= |. ..++...++..| +.+.... ....-++....+......+.. ++
T Consensus 196 l~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~q~~li 270 (1171)
T TIGR01054 196 LGP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWKLIRLRLKLY----RALHAKKRLELLEAIPGKKRGCLI 270 (1171)
T ss_pred hcC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHHHhhhccccc----hHHHHHHHHHHHHhhhhccCcEEE
Confidence 000 112233331 10 011111111011 0010000 000000111112222111111 22
Q ss_pred -eccccccHHHHHHhhh---hhcccccchhhhc----cccc---HHHHHHHHHHhhhcceEEEEeccc---chhhHHHHH
Q psy17912 508 -VSHYNKSQQERDRVLN---EFRIGRASILVSH----YNKS---QQERDRVLNEFRIGRASILVSHYN---KSQQERDRV 573 (779)
Q Consensus 508 -~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~ 573 (779)
+|-.......+..++. .+.++.......+ |... .+...+++..+ |...|+|++|+ +.++++...
T Consensus 271 ~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~~~~~~L~~ll~~l--~~~~IVFv~t~~~~~~a~~l~~~ 348 (1171)
T TIGR01054 271 VSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDEDLKETLLEIVKKL--GTGGIVYVSIDYGKEKAEEIAEF 348 (1171)
T ss_pred EEeCCCCccccHHHHcccccceEecCccccccceEEEEEecccHHHHHHHHHHHc--CCCEEEEEeccccHHHHHHHHHH
Confidence 2322111111211211 2344444322111 1111 11223345543 55689999999 999999999
Q ss_pred HhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 574 LNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
|+..|+++..+ ||+.+| .+|+.|+.|+..|||+
T Consensus 349 L~~~g~~a~~l---hg~~~~----~~l~~Fr~G~~~vLVa 381 (1171)
T TIGR01054 349 LENHGVKAVAY---HATKPK----EDYEKFAEGEIDVLIG 381 (1171)
T ss_pred HHhCCceEEEE---eCCCCH----HHHHHHHcCCCCEEEE
Confidence 99999999999 999874 6999999999999998
No 206
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=98.28 E-value=1.7e-05 Score=99.87 Aligned_cols=331 Identities=14% Similarity=0.107 Sum_probs=168.2
Q ss_pred CCcEEEEecchhHHHHHHHHHHh----------------CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRN----------------KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQ 438 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~----------------~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~G 438 (779)
+.++|+.+|++.-+.++.+.|+. .++.+...||+++..+|.+.++ ...+|||+|+ +.=
T Consensus 37 ~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V~vrtGDt~~~eR~rll~----~ppdILVTTP--EsL 110 (1490)
T PRK09751 37 TSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERSKLTR----NPPDILITTP--ESL 110 (1490)
T ss_pred CCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEEEEEECCCCHHHHHHHhc----CCCCEEEecH--HHH
Confidence 46799999999999998888753 2678999999999999987655 4679999997 111
Q ss_pred ccc-CcccccccccceeEEEEc-C----CC--CCHHHHHHHhccC-CCC-CCeEEEEEcChHHHHHHHHhhhccc-ccee
Q psy17912 439 ERD-RVLNEFRIGRASILVSQY-K----ES--QQKRDRVLNEFRI-GRA-SILVSHYNKSQQERDRVLNEFRIGR-ASIL 507 (779)
Q Consensus 439 IDi-p~v~~~~~~~~~~~VI~y-~----~p--~s~~~yiQR~GRa-GR~-g~~~~~~~~~~~e~~~~l~e~~~~~-~~il 507 (779)
.++ ..-....+...-++||+= + .. ..++..+.|+-+. ++. -..+..-+..+.+ .+ .+|..+. ...+
T Consensus 111 ~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~e--ev-A~~L~g~~pv~I 187 (1490)
T PRK09751 111 YLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSAS--DV-AAFLGGDRPVTV 187 (1490)
T ss_pred HHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCHH--HH-HHHhcCCCCEEE
Confidence 110 000001122223344431 1 11 1223333333332 221 1222333333332 22 2333222 1112
Q ss_pred ec-cccccHHHHHHhhhhhcccccch---------hhhcccccHH-HHHHHHHHhhhcceEEEEecccchhhHHHHHHhh
Q psy17912 508 VS-HYNKSQQERDRVLNEFRIGRASI---------LVSHYNKSQQ-ERDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 576 (779)
Q Consensus 508 ~~-~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (779)
+. ...+.... +......+...... ........+. -...+++....+.+.|+|+||++.|+.+...|++
T Consensus 188 v~~~~~r~~~l-~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i~~~~stLVFvNSR~~AE~La~~L~~ 266 (1490)
T PRK09751 188 VNPPAMRHPQI-RIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNE 266 (1490)
T ss_pred ECCCCCcccce-EEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHHHhcCCCEEEECCCHHHHHHHHHHHHH
Confidence 11 11000000 00000000000000 0000001111 1245777777888999999999999999999987
Q ss_pred cC------------------------------ccceeEeeeccchhhhhHhhHhhhhhcCCceeEEeccccc----hhHH
Q psy17912 577 FR------------------------------IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKS----QQER 622 (779)
Q Consensus 577 ~~------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 622 (779)
.. .+...+.+.||+.|+++|.+|.+.||.|+.+++|+--.-. -...
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~V 346 (1490)
T PRK09751 267 LYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAV 346 (1490)
T ss_pred hhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccC
Confidence 52 1111234558999999999999999999999999742110 1122
Q ss_pred hhhhh--------h--hccccee---------EEeeccccch-hH----HhhhhhcceeecceecccchhhHHHHHHHHH
Q psy17912 623 DRVLN--------E--FRIGRAS---------ILVSHYNKSQ-QE----RDRVLNEFRIGRASILVSDFDILRQWRIAWD 678 (779)
Q Consensus 623 ~~~~~--------~--~~~~~~~---------~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~w~~~W~ 678 (779)
|-|++ + -|+|||. +++.. ++.. -| -+..+ +-.|--.....+.++++.+-.--=.
T Consensus 347 DlVIq~gsP~sVas~LQRiGRAGR~~gg~s~gli~p~-~r~dlle~~~~ve~~l-~g~iE~~~~p~nplDVLaqqiva~a 424 (1490)
T PRK09751 347 DLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPR-TRRDLVDSAVIVECMF-AGRLENLTPPHNPLDVLAQQTVAAA 424 (1490)
T ss_pred CEEEEeCCCCCHHHHHHHhCCCCCCCCCccEEEEEeC-cHHHHHhhHHHHHHHh-cCCCCccCCCCChHHHHHHHHHHHH
Confidence 33332 1 2677772 22222 2111 11 11111 1223344555566666654322111
Q ss_pred Hhhh-hhcccCCCCcCCCCCCCCChhhHHHhhhhhccccc
Q psy17912 679 EAAV-AEAQHLPCIETQPPGFELTRRLWVTLNRIRTKFGK 717 (779)
Q Consensus 679 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~lrtg~~~ 717 (779)
.... ...++........|+.+|++..|..+-++-+|.+-
T Consensus 425 ~~~~~~~d~l~~~vrra~pf~~L~~~~f~~vl~~L~~~y~ 464 (1490)
T PRK09751 425 AMDALQVDEWYSRVRRAAPWKDLPRRVFDATLDMLSGRYP 464 (1490)
T ss_pred hcCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHhcccc
Confidence 1110 11122222344557889999999998888887543
No 207
>PTZ00424 helicase 45; Provisional
Probab=98.21 E-value=0.0001 Score=82.95 Aligned_cols=57 Identities=19% Similarity=0.384 Sum_probs=54.0
Q ss_pred ceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 555 RASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
...|+|++|++.++.+.+.|++.+++...+ ||+-++.||..++++|+.|+..|||+-
T Consensus 268 ~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~---h~~~~~~~R~~i~~~f~~g~~~vLvaT 324 (401)
T PTZ00424 268 TQAIIYCNTRRKVDYLTKKMHERDFTVSCM---HGDMDQKDRDLIMREFRSGSTRVLITT 324 (401)
T ss_pred CeEEEEecCcHHHHHHHHHHHHCCCcEEEE---eCCCCHHHHHHHHHHHHcCCCCEEEEc
Confidence 468999999999999999999999998888 999999999999999999999999985
No 208
>KOG0340|consensus
Probab=98.20 E-value=9.2e-06 Score=85.32 Aligned_cols=218 Identities=16% Similarity=0.180 Sum_probs=126.5
Q ss_pred HHHHHhccCC-CCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccc
Q psy17912 365 GLLSQIGSER-TSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQE 439 (779)
Q Consensus 365 ~ll~~i~~~~-~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GI 439 (779)
.++..+...+ +.=.+||.||++.+-++++.|... +.++..+.|+++.-.+...+. .+-.|+|||+ ++--
T Consensus 64 Pil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~----~rPHvVvatP--GRla 137 (442)
T KOG0340|consen 64 PILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILS----DRPHVVVATP--GRLA 137 (442)
T ss_pred HHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcc----cCCCeEecCc--cccc
Confidence 3444443332 345899999999999999999864 578999999998776666654 5778999998 4433
Q ss_pred ccC----cccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHH-HHHhhhccccceeecc-ccc
Q psy17912 440 RDR----VLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDR-VLNEFRIGRASILVSH-YNK 513 (779)
Q Consensus 440 Dip----~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~-~l~e~~~~~~~il~~~-~~~ 513 (779)
|.- .+..+...+.-.+|++-..+ ++-. .-++.++ .+.-.-..+...+++- .++
T Consensus 138 d~l~sn~~~~~~~~~rlkflVlDEADr------vL~~---------------~f~d~L~~i~e~lP~~RQtLlfSATitd 196 (442)
T KOG0340|consen 138 DHLSSNLGVCSWIFQRLKFLVLDEADR------VLAG---------------CFPDILEGIEECLPKPRQTLLFSATITD 196 (442)
T ss_pred cccccCCccchhhhhceeeEEecchhh------hhcc---------------chhhHHhhhhccCCCccceEEEEeehhh
Confidence 311 11112222323344431111 0000 0001111 1111111112222221 111
Q ss_pred cHHHHHHhhhhhcccccc-------------hhhhcccccHHHHHH----HHHHhhh--cceEEEEecccchhhHHHHHH
Q psy17912 514 SQQERDRVLNEFRIGRAS-------------ILVSHYNKSQQERDR----VLNEFRI--GRASILVSHYNKSQQERDRVL 574 (779)
Q Consensus 514 ~~~~~~~~l~~~~~~~~~-------------~~~~~~~~~~~~~~~----~l~~~~~--~~~~~~~~~~~~~~~~~~~~~ 574 (779)
...+-..+ ....+.+- +...+-.....-+|. +|..|+. ...++||++|.+.||-+-..|
T Consensus 197 ~i~ql~~~--~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l 274 (442)
T KOG0340|consen 197 TIKQLFGC--PITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTL 274 (442)
T ss_pred HHHHhhcC--CcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHH
Confidence 11000000 00000000 111111111223333 7888888 668999999999999999999
Q ss_pred hhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 575 NEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+..++--+|+ |+--.|+||---|..||++.++||+..
T Consensus 275 ~~le~r~~~l---Hs~m~Q~eR~~aLsrFrs~~~~iliaT 311 (442)
T KOG0340|consen 275 KNLEVRVVSL---HSQMPQKERLAALSRFRSNAARILIAT 311 (442)
T ss_pred hhhceeeeeh---hhcchHHHHHHHHHHHhhcCccEEEEe
Confidence 9999999999 999999999999999999999998753
No 209
>PRK09401 reverse gyrase; Reviewed
Probab=98.16 E-value=7.4e-05 Score=93.64 Aligned_cols=222 Identities=15% Similarity=0.245 Sum_probs=119.7
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEE--EEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAV--AIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEF 447 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~--~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~ 447 (779)
.+.++||.+||+..+.++++.|+.. ++.+. ..|++++..++.+..+.+..|..+|+|+|+ ++-.+... .+
T Consensus 122 ~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp--~rL~~~~~--~l 197 (1176)
T PRK09401 122 KGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTS--QFLSKNFD--EL 197 (1176)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECH--HHHHHHHH--hc
Confidence 4688999999999999999999865 33443 445667788889999999999999999997 22221100 01
Q ss_pred ccccceeEEEE-cCC----CCCHHHHHHHhc----------cCCCCCCeEEEEEcChHHHHHHHHh----hhc-ccccee
Q psy17912 448 RIGRASILVSQ-YKE----SQQKRDRVLNEF----------RIGRASILVSHYNKSQQERDRVLNE----FRI-GRASIL 507 (779)
Q Consensus 448 ~~~~~~~~VI~-y~~----p~s~~~yiQR~G----------RaGR~g~~~~~~~~~~~e~~~~l~e----~~~-~~~~il 507 (779)
.......+|++ .|. ..+.....+..| ..-+.+.. . ....++...+.+ +.. ...-++
T Consensus 198 ~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~i~~~~~---~-~~~~~~i~~l~~~i~~~~~~~~q~il 273 (1176)
T PRK09401 198 PKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMELIRLKRK---Y-EEIYEKIRELEEKIAELKDKKGVLVV 273 (1176)
T ss_pred cccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHhcccccc---c-chhhhHHHHHHHhhhhcccCCceEEE
Confidence 11112234443 111 111111111111 00000000 0 000111111111 111 122234
Q ss_pred eccccccHHHHHHhhh---hhcccccchhhh---c-ccccHHHH---HHHHHHhhhcceEEEEecccch---hhHHHHHH
Q psy17912 508 VSHYNKSQQERDRVLN---EFRIGRASILVS---H-YNKSQQER---DRVLNEFRIGRASILVSHYNKS---QQERDRVL 574 (779)
Q Consensus 508 ~~~~~~~~~~~~~~l~---~~~~~~~~~~~~---~-~~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~ 574 (779)
+|-.-+....+..++. .+.+++...... | |....... -+++.. .+...|+|++|+++ ++++...|
T Consensus 274 fSAT~~~~~~~~~l~~~ll~~~v~~~~~~~rnI~~~yi~~~~k~~~L~~ll~~--l~~~~LIFv~t~~~~~~ae~l~~~L 351 (1176)
T PRK09401 274 SSATGRPRGNRVKLFRELLGFEVGSPVFYLRNIVDSYIVDEDSVEKLVELVKR--LGDGGLIFVPSDKGKEYAEELAEYL 351 (1176)
T ss_pred EeCCCCccchHHHHhhccceEEecCcccccCCceEEEEEcccHHHHHHHHHHh--cCCCEEEEEecccChHHHHHHHHHH
Confidence 4433222112111111 234554432111 1 11111111 223333 34578999999999 99999999
Q ss_pred hhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 575 NEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
+..|+++.++ ||+. ++.++.|+.|+..|||+
T Consensus 352 ~~~gi~v~~~---hg~l-----~~~l~~F~~G~~~VLVa 382 (1176)
T PRK09401 352 EDLGINAELA---ISGF-----ERKFEKFEEGEVDVLVG 382 (1176)
T ss_pred HHCCCcEEEE---eCcH-----HHHHHHHHCCCCCEEEE
Confidence 9999999999 9999 23469999999999999
No 210
>KOG0327|consensus
Probab=98.15 E-value=5.9e-06 Score=87.89 Aligned_cols=69 Identities=19% Similarity=0.320 Sum_probs=61.1
Q ss_pred HHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEeccccc
Q psy17912 547 VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKS 618 (779)
Q Consensus 547 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (779)
...-|+.-.-+++|+||.+..+.+|..|.++||--.+| |||..|+|||-++.|||+|.+++||+.--++
T Consensus 256 l~dl~~~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~---~~d~~q~~R~~~~~ef~~gssrvlIttdl~a 324 (397)
T KOG0327|consen 256 LCDLYRRVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAI---HGDMEQNERDTLMREFRSGSSRVLITTDLLA 324 (397)
T ss_pred HHHHHHhhhcceEEecchhhHHHHHHHHhhCCceEEEe---ecccchhhhhHHHHHhhcCCceEEeeccccc
Confidence 44445555579999999999999999999999999999 9999999999999999999999998865443
No 211
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=98.14 E-value=5.8e-05 Score=90.13 Aligned_cols=57 Identities=21% Similarity=0.212 Sum_probs=50.2
Q ss_pred hcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHh-----hHhhhhhc----CC-------ceeEEec
Q psy17912 553 IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERD-----RVLNEFRI----GR-------ASILVSH 614 (779)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~----~~-------~~~~~~~ 614 (779)
.+...|+|+||++.++++.+.|+..++ ..+ ||+.+|.+|+ .++++|+. |+ ..|||+-
T Consensus 271 ~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lL---HG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVAT 343 (844)
T TIGR02621 271 SGGAILVFCRTVKHVRKVFAKLPKEKF--ELL---TGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCT 343 (844)
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCC--eEe---eCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEecc
Confidence 456799999999999999999999987 556 9999999999 89999998 54 6788874
No 212
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.12 E-value=4.9e-05 Score=93.48 Aligned_cols=69 Identities=14% Similarity=0.166 Sum_probs=55.4
Q ss_pred HHHHHHhhhcceEEEEecccchhhHHHHHHhhcC---ccceeEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 545 DRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR---IGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 545 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
+.+.+..+.+...|+||+|.+.|+.+...|+... +....|.+.||+-++++|.+|++.||.|+..|||+
T Consensus 275 ~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVa 346 (876)
T PRK13767 275 ETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVS 346 (876)
T ss_pred HHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 3345555668899999999999999999998731 11223444499999999999999999999999997
No 213
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.12 E-value=2.7e-05 Score=80.13 Aligned_cols=73 Identities=19% Similarity=0.246 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHhcCCC-EEEEccCCCChhHHHHHHHHHHHhcc-CCCCCCCCCEEEEEccCHHHHHHHHHHHHH
Q psy17912 150 APTAIQAQGWPIALSGCD-LVAIAKTGSGKTLGYIAPAIVHVNSQ-RPLRSGEGPIVLVLAPTRELAQQIETVAND 223 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~d-vii~apTGsGKTl~~~lp~l~~l~~~-~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 223 (779)
++++.|.+|+..+++... .+|.||.|+|||.+..- ++..+... .......+.++|+++|+...+.++.+.+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~-~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSNGITLIQGPPGTGKTTTLAS-IIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHH-HHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHH-HHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 367899999999999988 99999999999954333 33333110 000122466899999999999999888877
No 214
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=98.12 E-value=4.2e-05 Score=80.43 Aligned_cols=179 Identities=17% Similarity=0.171 Sum_probs=113.6
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh----------cCCCEEEEccCCCChhHHHHHHHHHHHhc
Q psy17912 123 VPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIAL----------SGCDLVAIAKTGSGKTLGYIAPAIVHVNS 192 (779)
Q Consensus 123 ~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il----------~g~dvii~apTGsGKTl~~~lp~l~~l~~ 192 (779)
+++|..++. +.||+.++.. ..++..|.|++-.+. ...-.++-..||.||--...--++.....
T Consensus 17 v~~P~~~y~-~~lp~~~~~~------g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~ 89 (303)
T PF13872_consen 17 VAPPDPTYR-LHLPEEVIDS------GLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLR 89 (303)
T ss_pred CCCCCCCcc-cCCCHHHHhc------ccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHc
Confidence 444444433 3788876664 357899999986664 23468888999999987766666666654
Q ss_pred cCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC--
Q psy17912 193 QRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT-- 270 (779)
Q Consensus 193 ~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~-- 270 (779)
. ..++|+++.+..|..+....++.++.. .+.+..+..-... ....+ .-.|+++|+-.|......+.
T Consensus 90 G-------r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~~--~~~~~--~~GvlF~TYs~L~~~~~~~~~~ 157 (303)
T PF13872_consen 90 G-------RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKYG--DIIRL--KEGVLFSTYSTLISESQSGGKY 157 (303)
T ss_pred C-------CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhccC--cCCCC--CCCccchhHHHHHhHHhccCCc
Confidence 2 236899999999999999999888654 3333222211100 00111 23699999988877653211
Q ss_pred -cCC--------CCe-eEEEEccchhhhcCCc--------hHHHHHHHhhcCCCCceEEeeccccHHHH
Q psy17912 271 -INL--------HRT-SYLVLDEADRMLDMGF--------EPQIRKIIGQIRPDRQVLMWSATWPKEVQ 321 (779)
Q Consensus 271 -~~l--------~~i-~~lViDEaH~l~~~~f--------~~~l~~il~~l~~~~qilllSAT~~~~v~ 321 (779)
..+ .++ .+|||||||.+....- ...+..+-..+ |+.+++.+|||-..+.+
T Consensus 158 ~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~L-P~ARvvY~SATgasep~ 225 (303)
T PF13872_consen 158 RSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRL-PNARVVYASATGASEPR 225 (303)
T ss_pred cchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhC-CCCcEEEecccccCCCc
Confidence 111 122 5899999998776532 12333444445 66779999999765543
No 215
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.02 E-value=2.7e-05 Score=78.43 Aligned_cols=145 Identities=15% Similarity=0.251 Sum_probs=75.2
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHH-------HHHHH
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQI-------ETVAN 222 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~-------~~~~~ 222 (779)
-.++.|..++.++++..-+++.||.|+|||+.++..++..+... .-.+++|+-|..+....+ .+.+.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~~~~lGflpG~~~eK~~ 77 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEAGEDLGFLPGDLEEKME 77 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--TT----SS---------
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCCccccccCCCCHHHHHH
Confidence 45789999999999888899999999999999999888887762 234788888876542211 00000
Q ss_pred HhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhh
Q psy17912 223 DFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQ 302 (779)
Q Consensus 223 ~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~ 302 (779)
-+.... .-.............+.....|-+.++. ++ ++. .+. -++||||||+.+. ..++..++..
T Consensus 78 p~~~p~----~d~l~~~~~~~~~~~~~~~~~Ie~~~~~----~i-RGr-t~~-~~~iIvDEaQN~t----~~~~k~ilTR 142 (205)
T PF02562_consen 78 PYLRPI----YDALEELFGKEKLEELIQNGKIEIEPLA----FI-RGR-TFD-NAFIIVDEAQNLT----PEELKMILTR 142 (205)
T ss_dssp TTTHHH----HHHHTTTS-TTCHHHHHHTTSEEEEEGG----GG-TT---B--SEEEEE-SGGG------HHHHHHHHTT
T ss_pred HHHHHH----HHHHHHHhChHhHHHHhhcCeEEEEehh----hh-cCc-ccc-ceEEEEecccCCC----HHHHHHHHcc
Confidence 000000 0000000011122222233455555542 22 111 122 2799999999866 4588888999
Q ss_pred cCCCCceEEeecc
Q psy17912 303 IRPDRQVLMWSAT 315 (779)
Q Consensus 303 l~~~~qilllSAT 315 (779)
+..+.+++++.-.
T Consensus 143 ~g~~skii~~GD~ 155 (205)
T PF02562_consen 143 IGEGSKIIITGDP 155 (205)
T ss_dssp B-TT-EEEEEE--
T ss_pred cCCCcEEEEecCc
Confidence 9888888887644
No 216
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.99 E-value=1.9e-05 Score=79.77 Aligned_cols=123 Identities=18% Similarity=0.238 Sum_probs=71.8
Q ss_pred CCCHHHHHHHHHHhcCC--CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhccc
Q psy17912 150 APTAIQAQGWPIALSGC--DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSA 227 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~--dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 227 (779)
++++-|.+++..++... -+++.|+.|+|||.+ +..+...+.. .+.++++++||...+....+..
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~-------~g~~v~~~apT~~Aa~~L~~~~------ 66 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEA-------AGKRVIGLAPTNKAAKELREKT------ 66 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHH------
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHh-------CCCeEEEECCcHHHHHHHHHhh------
Confidence 36889999999997544 477889999999954 2334444443 2468999999998888655442
Q ss_pred CCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcC----CcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc
Q psy17912 228 TATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQG----TINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI 303 (779)
Q Consensus 228 ~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~----~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l 303 (779)
++.. .|...++...... ...+...++||||||-.+. ...+..++..+
T Consensus 67 -~~~a------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~----~~~~~~ll~~~ 117 (196)
T PF13604_consen 67 -GIEA------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVD----SRQLARLLRLA 117 (196)
T ss_dssp -TS-E------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-B----HHHHHHHHHHS
T ss_pred -Ccch------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccC----HHHHHHHHHHH
Confidence 1221 1211111111010 0115566799999998765 34677777777
Q ss_pred CC-CCceEEeecc
Q psy17912 304 RP-DRQVLMWSAT 315 (779)
Q Consensus 304 ~~-~~qilllSAT 315 (779)
.. +.+++++.=+
T Consensus 118 ~~~~~klilvGD~ 130 (196)
T PF13604_consen 118 KKSGAKLILVGDP 130 (196)
T ss_dssp -T-T-EEEEEE-T
T ss_pred HhcCCEEEEECCc
Confidence 65 6677776644
No 217
>PRK05580 primosome assembly protein PriA; Validated
Probab=97.98 E-value=0.00028 Score=84.47 Aligned_cols=78 Identities=13% Similarity=0.176 Sum_probs=63.1
Q ss_pred cchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHh-CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q psy17912 357 HEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRN-KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK 435 (779)
Q Consensus 357 ~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~-~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~ 435 (779)
..|-.....++..... .+.++||.+|++..+.++.+.|++ .+..+..+||+++..+|.++.....+|+.+|+|+|..+
T Consensus 173 SGKT~v~l~~i~~~l~-~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsa 251 (679)
T PRK05580 173 SGKTEVYLQAIAEVLA-QGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSA 251 (679)
T ss_pred ChHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHH
Confidence 3455444444443322 367899999999999999999987 47889999999999999999999999999999999743
No 218
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.98 E-value=0.00044 Score=79.86 Aligned_cols=77 Identities=9% Similarity=0.173 Sum_probs=62.9
Q ss_pred chhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q psy17912 358 EKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK-GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK 435 (779)
Q Consensus 358 ~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~-g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~ 435 (779)
.|-.....++..... .++++||.+|+...+.++++.|++. +..+..+||+++..+|.++.....+|+.+|+|+|..+
T Consensus 9 GKT~v~l~~i~~~l~-~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsa 86 (505)
T TIGR00595 9 GKTEVYLQAIEKVLA-LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSA 86 (505)
T ss_pred CHHHHHHHHHHHHHH-cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHH
Confidence 444444455544332 3678999999999999999999864 6789999999999999999999999999999999754
No 219
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=97.94 E-value=0.00036 Score=77.23 Aligned_cols=73 Identities=18% Similarity=0.261 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhh----HhhhhhcCCceeEEec
Q psy17912 541 QQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDR----VLNEFRIGRASILVSH 614 (779)
Q Consensus 541 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 614 (779)
.+...++++....+...|+|++|.+.++++.+.|++.+.+ ..+...||+.++.+|+. +++.|+.|+..|||+-
T Consensus 209 ~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~~~L~~~~~~-~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT 285 (358)
T TIGR01587 209 ISSLERLLEFIKKGGKIAIIVNTVDRAQEFYQQLKENAPE-EEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVAT 285 (358)
T ss_pred HHHHHHHHHHhhCCCeEEEEECCHHHHHHHHHHHHhhcCC-CeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEEC
Confidence 3455667788888899999999999999999999998775 23334499999999976 5999999999999974
No 220
>KOG0326|consensus
Probab=97.86 E-value=2.6e-05 Score=80.78 Aligned_cols=210 Identities=18% Similarity=0.213 Sum_probs=125.8
Q ss_pred CCcEEEEecchhHHHHHHHHHH---h-CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVR---N-KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIG 450 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~---~-~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~ 450 (779)
.-+++|.+|+++.|-+..+... + .++.+.+-.||++- |..+++- ++...++|+|+ +|=+|+..-.+..+.
T Consensus 153 ~IQ~~ilVPtrelALQtSqvc~~lskh~~i~vmvttGGT~l--rDDI~Rl--~~~VH~~vgTP--GRIlDL~~KgVa~ls 226 (459)
T KOG0326|consen 153 VIQAIILVPTRELALQTSQVCKELSKHLGIKVMVTTGGTSL--RDDIMRL--NQTVHLVVGTP--GRILDLAKKGVADLS 226 (459)
T ss_pred ceeEEEEeecchhhHHHHHHHHHHhcccCeEEEEecCCccc--ccceeee--cCceEEEEcCC--hhHHHHHhcccccch
Confidence 4568999999997776655544 3 37889999999875 3344332 35788999998 666665554444455
Q ss_pred cceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccccceeecc-cc--ccHHHHHHhhhhhcc
Q psy17912 451 RASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH-YN--KSQQERDRVLNEFRI 527 (779)
Q Consensus 451 ~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~-~~--~~~~~~~~~l~~~~~ 527 (779)
...++|.+-..-.--.+|.+ .-..++.-+-..+...+.|- +. -..-....+-+.|.|
T Consensus 227 ~c~~lV~DEADKlLs~~F~~--------------------~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~I 286 (459)
T KOG0326|consen 227 DCVILVMDEADKLLSVDFQP--------------------IVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEI 286 (459)
T ss_pred hceEEEechhhhhhchhhhh--------------------HHHHHHHhCCccceeeEEecccchhHHHHHHHhccCccee
Confidence 54455544111000001110 11112222222222222221 11 111233334445566
Q ss_pred cccchhhhccccc----HHHHHH------HHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHh
Q psy17912 528 GRASILVSHYNKS----QQERDR------VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERD 597 (779)
Q Consensus 528 ~~~~~~~~~~~~~----~~~~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (779)
+-++-+......+ -+++.+ ....--+. -+|||||.-....=+..-.-+.||+-.-| |.--.|+.|.
T Consensus 287 NLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqIN-QsIIFCNS~~rVELLAkKITelGyscyyi---HakM~Q~hRN 362 (459)
T KOG0326|consen 287 NLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQIN-QSIIFCNSTNRVELLAKKITELGYSCYYI---HAKMAQEHRN 362 (459)
T ss_pred ehhhhhhhcchhhheeeechhhhhhhHHHHHHHhccc-ceEEEeccchHhHHHHHHHHhccchhhHH---HHHHHHhhhh
Confidence 6555444432211 123333 22333333 48999999888888888889999999989 9999999999
Q ss_pred hHhhhhhcCCceeEEec
Q psy17912 598 RVLNEFRIGRASILVSH 614 (779)
Q Consensus 598 ~~~~~~~~~~~~~~~~~ 614 (779)
+|+-+||.|+..+||..
T Consensus 363 rVFHdFr~G~crnLVct 379 (459)
T KOG0326|consen 363 RVFHDFRNGKCRNLVCT 379 (459)
T ss_pred hhhhhhhccccceeeeh
Confidence 99999999999999974
No 221
>KOG0332|consensus
Probab=97.82 E-value=0.00021 Score=75.78 Aligned_cols=64 Identities=17% Similarity=0.308 Sum_probs=58.2
Q ss_pred HHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 547 VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 547 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+..-..+|+ +||||+||+++..+.+-|+++|.--.++ |||-.-++||.+..+||.|+..+||+.
T Consensus 324 lyg~~tigq-siIFc~tk~ta~~l~~~m~~~Gh~V~~l---~G~l~~~~R~~ii~~Fr~g~~kVLitT 387 (477)
T KOG0332|consen 324 LYGLLTIGQ-SIIFCHTKATAMWLYEEMRAEGHQVSLL---HGDLTVEQRAAIIDRFREGKEKVLITT 387 (477)
T ss_pred HHhhhhhhh-eEEEEeehhhHHHHHHHHHhcCceeEEe---eccchhHHHHHHHHHHhcCcceEEEEe
Confidence 444455666 8999999999999999999999999999 999999999999999999999999985
No 222
>KOG0342|consensus
Probab=97.79 E-value=0.0005 Score=75.54 Aligned_cols=220 Identities=14% Similarity=0.113 Sum_probs=131.2
Q ss_pred CCCcEEEEecchhHHHHHHHHHHh----C-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCc-cccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRN----K-GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRV-LNEF 447 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~----~-g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~-v~~~ 447 (779)
++-.+||.|||++-|-+++..+++ + ++.+..+-||..... -.+.... .+.|||||+ +|-+|.-. -..+
T Consensus 153 ~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~---e~~kl~k-~~niliATP--GRLlDHlqNt~~f 226 (543)
T KOG0342|consen 153 NGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSV---EADKLVK-GCNILIATP--GRLLDHLQNTSGF 226 (543)
T ss_pred CCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchH---HHHHhhc-cccEEEeCC--chHHhHhhcCCcc
Confidence 456799999999999888877764 3 566777777765432 2223333 789999999 88887221 1111
Q ss_pred ccccceeEEEEc-------CCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccccceeeccccc-cHHHHH
Q psy17912 448 RIGRASILVSQY-------KESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNK-SQQERD 519 (779)
Q Consensus 448 ~~~~~~~~VI~y-------~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~~~-~~~~~~ 519 (779)
..+..-.+|++- +.+.++. |-++=.. .......|....+.+-+-+....+.+....+..... ....-+
T Consensus 227 ~~r~~k~lvlDEADrlLd~GF~~di~---~Ii~~lp-k~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The 302 (543)
T KOG0342|consen 227 LFRNLKCLVLDEADRLLDIGFEEDVE---QIIKILP-KQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHE 302 (543)
T ss_pred hhhccceeEeecchhhhhcccHHHHH---HHHHhcc-ccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhh
Confidence 111111244431 1222222 2222222 223344555555555444444444443333333222 222333
Q ss_pred Hhhhhhcccccc-hhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhh
Q psy17912 520 RVLNEFRIGRAS-ILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDR 598 (779)
Q Consensus 520 ~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (779)
++-..|.++..+ =+..-|. .|......+++|+|+.|-.+.+=...+|+.--+|-+.| ||.+.|+-|-.
T Consensus 303 ~l~Qgyvv~~~~~~f~ll~~--------~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~ei---Hgk~~Q~kRT~ 371 (543)
T KOG0342|consen 303 RLEQGYVVAPSDSRFSLLYT--------FLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEI---HGKQKQNKRTS 371 (543)
T ss_pred cccceEEeccccchHHHHHH--------HHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhh---hcCCcccccch
Confidence 333333332211 0111111 22333333889999999999999999999999999999 99999999999
Q ss_pred HhhhhhcCCceeEEec
Q psy17912 599 VLNEFRIGRASILVSH 614 (779)
Q Consensus 599 ~~~~~~~~~~~~~~~~ 614 (779)
+..||+.-++-|||..
T Consensus 372 ~~~~F~kaesgIL~cT 387 (543)
T KOG0342|consen 372 TFFEFCKAESGILVCT 387 (543)
T ss_pred HHHHHhhcccceEEec
Confidence 9999999999999874
No 223
>PRK13766 Hef nuclease; Provisional
Probab=97.74 E-value=0.0023 Score=78.35 Aligned_cols=61 Identities=23% Similarity=0.308 Sum_probs=55.1
Q ss_pred hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccc--------hhhhhHhhHhhhhhcCCceeEEecc
Q psy17912 552 RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYN--------KSQQERDRVLNEFRIGRASILVSHY 615 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (779)
..+...||||.+.++|+.+.+.|+..|++...+ ||. .+|.||..+++.|+.|+..|||+.-
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~---~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~ 431 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRF---VGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTS 431 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEE---EccccccccCCCCHHHHHHHHHHHHcCCCCEEEECC
Confidence 356789999999999999999999999999888 775 7899999999999999999998753
No 224
>KOG1802|consensus
Probab=97.73 E-value=9.3e-05 Score=83.44 Aligned_cols=84 Identities=18% Similarity=0.122 Sum_probs=64.7
Q ss_pred HHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHH
Q psy17912 142 KIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVA 221 (779)
Q Consensus 142 ~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 221 (779)
.+...++.+++.-|..|+..+++..-.|+++|+|+|||.+..--+++ +..+ ....+|+++|+...+.|+++.+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyh-l~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYH-LARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHH-HHHh------cCCceEEEcccchhHHHHHHHH
Confidence 34446778899999999999999999999999999999775444443 3332 2346899999999999988888
Q ss_pred HHhcccCCceEEEEe
Q psy17912 222 NDFGSATATRVACVF 236 (779)
Q Consensus 222 ~~~~~~~~l~v~~~~ 236 (779)
.+- +++|+-+.
T Consensus 475 h~t----gLKVvRl~ 485 (935)
T KOG1802|consen 475 HKT----GLKVVRLC 485 (935)
T ss_pred Hhc----CceEeeee
Confidence 765 56665543
No 225
>PHA02558 uvsW UvsW helicase; Provisional
Probab=97.72 E-value=0.0016 Score=75.50 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=55.5
Q ss_pred hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEeccc
Q psy17912 552 RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYN 616 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (779)
..|...++|+...+.++.+...|+..|+++..| ||+.++.||+.+++.|+.|+..|+|+-++
T Consensus 342 ~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i---~G~~~~~eR~~i~~~~~~~~~~vLvaT~~ 403 (501)
T PHA02558 342 KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYV---SGEVDTEDRNEMKKIAEGGKGIIIVASYG 403 (501)
T ss_pred hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEE---eCCCCHHHHHHHHHHHhCCCCeEEEEEcc
Confidence 456777887888889999999999999999999 99999999999999999999999988653
No 226
>KOG1803|consensus
Probab=97.65 E-value=0.00012 Score=82.36 Aligned_cols=65 Identities=23% Similarity=0.222 Sum_probs=51.9
Q ss_pred CCCCHHHHHHHHHHhcCCC-EEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHH
Q psy17912 149 QAPTAIQAQGWPIALSGCD-LVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVA 221 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~d-vii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 221 (779)
..+.+-|..|+....+.++ .++.||+|+|||.+...-+.+.+.. +.++||.+||.+-+..+.+.+
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~--------~k~VLVcaPSn~AVdNiverl 249 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQ--------KKRVLVCAPSNVAVDNIVERL 249 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHc--------CCeEEEEcCchHHHHHHHHHh
Confidence 4578899999999988855 7889999999997766555555544 458999999999988887753
No 227
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.60 E-value=0.00025 Score=78.41 Aligned_cols=108 Identities=20% Similarity=0.241 Sum_probs=68.3
Q ss_pred CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHH
Q psy17912 167 DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVK 246 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~ 246 (779)
.++|.|..|||||++++-.+... .. ...+..++++++..+|...+.+.+.....
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l-~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-------------------- 56 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL-QN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYN-------------------- 56 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh-hc-----cccCCceEEEEecchHHHHHHHHHhhhcc--------------------
Confidence 47899999999997655444333 11 12355789999999999987777755420
Q ss_pred HhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC-------chHHHHHHHhh
Q psy17912 247 ALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG-------FEPQIRKIIGQ 302 (779)
Q Consensus 247 ~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~-------f~~~l~~il~~ 302 (779)
.......+..+..+...+.........+++|||||||++...+ ....+..+++.
T Consensus 57 --~~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 57 --PKLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred --cchhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0001233445544444433223456789999999999998732 23556666654
No 228
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.59 E-value=0.00064 Score=79.59 Aligned_cols=142 Identities=20% Similarity=0.192 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCce
Q psy17912 152 TAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATR 231 (779)
Q Consensus 152 ~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~ 231 (779)
.+.|++|+..++.++-+++.|+.|+|||.+..- ++..+..... ....+++++++||---|..+.+.+......+...
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~-ll~~l~~~~~--~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~~ 223 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTVAR-LLLALVKQSP--KQGKLRIALAAPTGKAAARLAESLRKAVKNLAAA 223 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHH-HHHHHHHhcc--ccCCCcEEEECCcHHHHHHHHHHHHhhhcccccc
Confidence 378999999999999999999999999965322 2222222111 0113579999999988887777665543222110
Q ss_pred EEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHc------CCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCC
Q psy17912 232 VACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQ------GTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRP 305 (779)
Q Consensus 232 v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~------~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~ 305 (779)
. .......+-..|-.+|+..... +..+...+++||||||=.+. ...+..++..+++
T Consensus 224 ----------~----~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd----~~l~~~ll~al~~ 285 (586)
T TIGR01447 224 ----------E----ALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVD----LPLMAKLLKALPP 285 (586)
T ss_pred ----------h----hhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCC----HHHHHHHHHhcCC
Confidence 0 0001112234455555433211 11223467999999997644 4467778888888
Q ss_pred CCceEEeec
Q psy17912 306 DRQVLMWSA 314 (779)
Q Consensus 306 ~~qilllSA 314 (779)
..++|++.=
T Consensus 286 ~~rlIlvGD 294 (586)
T TIGR01447 286 NTKLILLGD 294 (586)
T ss_pred CCEEEEECC
Confidence 888887653
No 229
>PRK10536 hypothetical protein; Provisional
Probab=97.59 E-value=0.00076 Score=69.95 Aligned_cols=143 Identities=17% Similarity=0.184 Sum_probs=83.9
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHH---------
Q psy17912 146 MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQ--------- 216 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q--------- 216 (779)
.++...+..|...+..+.+...+++.||+|+|||+.....++..+... .-.+++|.-|+.+..+.
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~~ge~LGfLPG~~~ 128 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQADEDLGFLPGDIA 128 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCCchhhhCcCCCCHH
Confidence 345556889999999999888899999999999988877777665442 12356677676553221
Q ss_pred --HHHHHHHhcccCCceEEEEeCCCCChhhHH-Hh-hcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCc
Q psy17912 217 --IETVANDFGSATATRVACVFGGAPKGPQVK-AL-QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGF 292 (779)
Q Consensus 217 --~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~-~l-~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f 292 (779)
..-++.-+...+.. +.+. .... .+ .....|-|... .++.... + +-++||||||+.+.
T Consensus 129 eK~~p~~~pi~D~L~~----~~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrt--l-~~~~vIvDEaqn~~---- 189 (262)
T PRK10536 129 EKFAPYFRPVYDVLVR----RLGA----SFMQYCLRPEIGKVEIAPF----AYMRGRT--F-ENAVVILDEAQNVT---- 189 (262)
T ss_pred HHHHHHHHHHHHHHHH----HhCh----HHHHHHHHhccCcEEEecH----HHhcCCc--c-cCCEEEEechhcCC----
Confidence 11111111111110 0111 1111 11 11234555554 3332222 2 23799999999765
Q ss_pred hHHHHHHHhhcCCCCceEEee
Q psy17912 293 EPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 293 ~~~l~~il~~l~~~~qilllS 313 (779)
...+..++..+..+.++|++.
T Consensus 190 ~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred HHHHHHHHhhcCCCCEEEEeC
Confidence 357788888888777777654
No 230
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.58 E-value=0.00055 Score=80.34 Aligned_cols=141 Identities=19% Similarity=0.159 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCce
Q psy17912 152 TAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATR 231 (779)
Q Consensus 152 ~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~ 231 (779)
.+.|++|+...+.++-+++.|++|+|||.+... ++..+.... ......+++++||---|..+.+.+.......++.
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~-ll~~l~~~~---~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~ 229 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAK-LLAALIQLA---DGERCRIRLAAPTGKAAARLTESLGKALRQLPLT 229 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH-HHHHHHHhc---CCCCcEEEEECCcHHHHHHHHHHHHhhhhccccc
Confidence 589999999999999999999999999966422 222222211 1123478999999999988877765543322210
Q ss_pred EEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHc------CCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCC
Q psy17912 232 VACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQ------GTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRP 305 (779)
Q Consensus 232 v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~------~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~ 305 (779)
+. .......-..|-.+|+..... +..+.-.+++||||||-.+- ...+..++..+++
T Consensus 230 -----------~~---~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd----~~lm~~ll~al~~ 291 (615)
T PRK10875 230 -----------DE---QKKRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMVD----LPMMARLIDALPP 291 (615)
T ss_pred -----------hh---hhhcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhccc----HHHHHHHHHhccc
Confidence 00 000111223444444432111 11223456899999997643 4567778888888
Q ss_pred CCceEEeec
Q psy17912 306 DRQVLMWSA 314 (779)
Q Consensus 306 ~~qilllSA 314 (779)
+.++|++.=
T Consensus 292 ~~rlIlvGD 300 (615)
T PRK10875 292 HARVIFLGD 300 (615)
T ss_pred CCEEEEecc
Confidence 888887753
No 231
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=97.56 E-value=0.0042 Score=71.73 Aligned_cols=214 Identities=17% Similarity=0.204 Sum_probs=134.4
Q ss_pred CCCcEEEEecchhHHHHHHH----HHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc-ccccccCcccccc
Q psy17912 374 RTSKTIIFVETKRKADDITR----SVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK-SQQERDRVLNEFR 448 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~----~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~-~~GIDip~v~~~~ 448 (779)
.+.++..-+||.--|++-++ .|...|+.+..+.|.+....|.++++...+|+++|+|.|.++ ...+++.++.
T Consensus 310 ~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~Lg--- 386 (677)
T COG1200 310 AGYQAALMAPTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLG--- 386 (677)
T ss_pred cCCeeEEeccHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeeccee---
Confidence 57889999999766665555 445568999999999999999999999999999999999854 4556666554
Q ss_pred cccceeEEEEcCCCCCHHHHH--HHhccCCCCCCeEEEEEcChHHHHHHHHhhhccccceeeccccccHHHHHHhhhhhc
Q psy17912 449 IGRASILVSQYKESQQKRDRV--LNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR 526 (779)
Q Consensus 449 ~~~~~~~VI~y~~p~s~~~yi--QR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~ 526 (779)
.+||+=..-.-..+.. .--|+. .-...+.+..+=-|--.+.-|..-..+ .+.+.-
T Consensus 387 -----LVIiDEQHRFGV~QR~~L~~KG~~---~Ph~LvMTATPIPRTLAlt~fgDldvS---------------~IdElP 443 (677)
T COG1200 387 -----LVIIDEQHRFGVHQRLALREKGEQ---NPHVLVMTATPIPRTLALTAFGDLDVS---------------IIDELP 443 (677)
T ss_pred -----EEEEeccccccHHHHHHHHHhCCC---CCcEEEEeCCCchHHHHHHHhccccch---------------hhccCC
Confidence 2334422211121111 111221 112222222222221122222111111 112222
Q ss_pred ccccchhhhcc--cccHHHHHHHHHHhhhcceEEEEeccc--------chhhHHHHHHhhcCccceeEeeeccchhhhhH
Q psy17912 527 IGRASILVSHY--NKSQQERDRVLNEFRIGRASILVSHYN--------KSQQERDRVLNEFRIGRASILVSHYNKSQQER 596 (779)
Q Consensus 527 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (779)
-||..+...-- +.-.+=.+++.++...|+-...||+-- +++.++-..|. .=||-+-|-+.||--+.+|.
T Consensus 444 ~GRkpI~T~~i~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~-~~~~~~~vgL~HGrm~~~eK 522 (677)
T COG1200 444 PGRKPITTVVIPHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELK-SFLPELKVGLVHGRMKPAEK 522 (677)
T ss_pred CCCCceEEEEeccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhhhHHHHHHHHH-HHcccceeEEEecCCChHHH
Confidence 34443222111 122344557888889999888888642 45667777787 66788777778999999999
Q ss_pred hhHhhhhhcCCceeEEec
Q psy17912 597 DRVLNEFRIGRASILVSH 614 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~ 614 (779)
|.|+.+||.|...||||-
T Consensus 523 d~vM~~Fk~~e~~ILVaT 540 (677)
T COG1200 523 DAVMEAFKEGEIDILVAT 540 (677)
T ss_pred HHHHHHHHcCCCcEEEEe
Confidence 999999999999999985
No 232
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.56 E-value=0.00099 Score=67.84 Aligned_cols=151 Identities=21% Similarity=0.327 Sum_probs=95.0
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc---CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEE
Q psy17912 129 HFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALS---GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVL 205 (779)
Q Consensus 129 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~---g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vL 205 (779)
+|+....|..++-.+. +---.++.|.++...+.+ ++|.+..+-+|.|||. .++|++..+.... ...+.
T Consensus 4 ~w~p~~~P~wLl~E~e--~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTs-VI~Pmla~~LAdg------~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIE--SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTS-VIVPMLALALADG------SRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHH--cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccc-hHHHHHHHHHcCC------CcEEE
Confidence 4555666777776665 233579999999988885 5799999999999994 5678877776642 23667
Q ss_pred EEccCHHHHHHHHHHHHHhccc-CCceEEEEe--CCCCChhh----HH----HhhcCCeEEEeChHHHHHHHHcC-----
Q psy17912 206 VLAPTRELAQQIETVANDFGSA-TATRVACVF--GGAPKGPQ----VK----ALQTGAEIVIATPGRLIDYLEQG----- 269 (779)
Q Consensus 206 il~Ptr~La~Q~~~~~~~~~~~-~~l~v~~~~--gg~~~~~~----~~----~l~~~~~IiV~Tpe~Ll~~l~~~----- 269 (779)
+++|. +|..|..+.+...... .+-++..+. -....... .. .......|+++||+.++.+.-..
T Consensus 75 viVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~ 153 (229)
T PF12340_consen 75 VIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQ 153 (229)
T ss_pred EEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHH
Confidence 77774 7999988887654332 233333332 22222111 11 12234579999999998754221
Q ss_pred --Cc-----------CCCCeeEEEEccchhhhc
Q psy17912 270 --TI-----------NLHRTSYLVLDEADRMLD 289 (779)
Q Consensus 270 --~~-----------~l~~i~~lViDEaH~l~~ 289 (779)
.. -+.+...=|+||+|.++.
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 10 022334468888887664
No 233
>KOG1016|consensus
Probab=97.55 E-value=0.0021 Score=73.77 Aligned_cols=99 Identities=16% Similarity=0.152 Sum_probs=78.2
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCC------------------eEEEEcCCCCHHHHHHHHHHHhcC--C-CcEEEEec
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNKGW------------------AAVAIHGNKSQQERDRVLNEFRIG--R-ASILVSQY 433 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~g~------------------~v~~ihg~~~~~eR~~il~~F~~G--~-~~ILVAT~ 433 (779)
+.++|||.++....+.+.+.|.+..+ .-..+.|-.+..+|++.++.|.+. - .-+|++|.
T Consensus 719 g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstr 798 (1387)
T KOG1016|consen 719 GEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTR 798 (1387)
T ss_pred CceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhc
Confidence 45789999999999999999986421 234678899999999999999852 2 35899999
Q ss_pred ccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeE
Q psy17912 434 NKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 434 v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~ 482 (779)
+..-||++-..+ .++.|+.-+++..-.|..-|+=|-|..-
T Consensus 799 ag~lGinLIsan---------r~~ifda~wnpchdaqavcRvyrYGQ~K 838 (1387)
T KOG1016|consen 799 AGSLGINLISAN---------RCIIFDACWNPCHDAQAVCRVYRYGQQK 838 (1387)
T ss_pred cccccceeeccc---------eEEEEEeecCccccchhhhhhhhhcCcC
Confidence 999999976655 6677888888877788788888877433
No 234
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.54 E-value=0.00058 Score=80.94 Aligned_cols=67 Identities=21% Similarity=0.144 Sum_probs=52.5
Q ss_pred CCCCHHHHHHHHHHhcC-CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHH
Q psy17912 149 QAPTAIQAQGWPIALSG-CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAND 223 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g-~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 223 (779)
..+++.|.+|+..++.. ..+++.||+|+|||.+..-.+.. +.. .++++|+++||...+.++.+.+..
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~-~~~-------~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQ-LVK-------RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHH-HHH-------cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 46799999999999876 57889999999999654433333 332 245899999999999988887765
No 235
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.48 E-value=0.00096 Score=80.29 Aligned_cols=126 Identities=19% Similarity=0.150 Sum_probs=79.1
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
..+++-|.+|+..+..++.+++.|+.|+|||.+. -.++..+.... ....+++++||-..|..+.+..
T Consensus 322 ~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~-----~~~~v~l~ApTg~AA~~L~e~~------- 388 (720)
T TIGR01448 322 KGLSEEQKQALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELG-----GLLPVGLAAPTGRAAKRLGEVT------- 388 (720)
T ss_pred CCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcC-----CCceEEEEeCchHHHHHHHHhc-------
Confidence 5789999999999999999999999999999543 22333332211 1146888999988776443321
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHc-----CCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQ-----GTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI 303 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~-----~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l 303 (779)
+... .|..+++..... ........++||||||+.+.. ..+..++..+
T Consensus 389 g~~a------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~ 440 (720)
T TIGR01448 389 GLTA------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAAL 440 (720)
T ss_pred CCcc------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH----HHHHHHHHhC
Confidence 2111 122222211100 001124578999999997653 3566777777
Q ss_pred CCCCceEEeecc
Q psy17912 304 RPDRQVLMWSAT 315 (779)
Q Consensus 304 ~~~~qilllSAT 315 (779)
+++.+++++.=+
T Consensus 441 ~~~~rlilvGD~ 452 (720)
T TIGR01448 441 PDHARLLLVGDT 452 (720)
T ss_pred CCCCEEEEECcc
Confidence 778888876543
No 236
>PRK02362 ski2-like helicase; Provisional
Probab=97.43 E-value=0.0021 Score=78.05 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=55.9
Q ss_pred HHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCcc---------------------------------ceeEeeeccc
Q psy17912 544 RDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIG---------------------------------RASILVSHYN 590 (779)
Q Consensus 544 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~ 590 (779)
.+.+++.+..+...|+|++|++.|+.+.+.|...... ...|-+.|++
T Consensus 233 ~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHag 312 (737)
T PRK02362 233 LNLVLDTLEEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAG 312 (737)
T ss_pred HHHHHHHHHcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCC
Confidence 3446666778889999999999999988887654210 0123445999
Q ss_pred hhhhhHhhHhhhhhcCCceeEEec
Q psy17912 591 KSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
-++.||+.|++.||.|...+||+.
T Consensus 313 l~~~eR~~ve~~Fr~G~i~VLvaT 336 (737)
T PRK02362 313 LSREHRELVEDAFRDRLIKVISST 336 (737)
T ss_pred CCHHHHHHHHHHHHcCCCeEEEec
Confidence 999999999999999999999864
No 237
>KOG1132|consensus
Probab=97.38 E-value=0.0012 Score=77.38 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHh----cCCCEEEEccCCCChhHHHHHHHHHHHhccC-----------C--------C-CC-------
Q psy17912 150 APTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQR-----------P--------L-RS------- 198 (779)
Q Consensus 150 ~p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~~lp~l~~l~~~~-----------~--------~-~~------- 198 (779)
+|+|.|...+..++ ..++.++..|||+|||++.+-..+.+....+ . . ..
T Consensus 21 qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e~ 100 (945)
T KOG1132|consen 21 QPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEEA 100 (945)
T ss_pred CcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhhh
Confidence 57888887776665 5678999999999999987666555443321 0 0 00
Q ss_pred -------CCCCEEEEEccCHHHHHHHHHHHHHhccc
Q psy17912 199 -------GEGPIVLVLAPTRELAQQIETVANDFGSA 227 (779)
Q Consensus 199 -------~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 227 (779)
-.-|++.+-.-|..-..|+.+++++....
T Consensus 101 ~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 101 GEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred cCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 01367777777777778888888776543
No 238
>KOG0351|consensus
Probab=97.36 E-value=0.0025 Score=77.64 Aligned_cols=220 Identities=13% Similarity=0.160 Sum_probs=143.3
Q ss_pred CcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEec---ccccccccCcccccccc
Q psy17912 376 SKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIG--RASILVSQY---NKSQQERDRVLNEFRIG 450 (779)
Q Consensus 376 ~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G--~~~ILVAT~---v~~~GIDip~v~~~~~~ 450 (779)
+-+||..|-..-.+.....|...++++..++++++..+|..+++.+.+| .++||--|+ +.+.++--.... ...+
T Consensus 305 gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~-L~~~ 383 (941)
T KOG0351|consen 305 GVTVVISPLISLMQDQVTHLSKKGIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLAD-LYAR 383 (941)
T ss_pred CceEEeccHHHHHHHHHHhhhhcCcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHh-ccCC
Confidence 4689999999999998999988999999999999999999999999999 899999997 333333211100 0000
Q ss_pred c-ceeEEEE-------cCCCCCHHHHHHHhc--cCCCCCCeEEEEEc--ChHHHHHHHHhhhccccceeeccccccHHHH
Q psy17912 451 R-ASILVSQ-------YKESQQKRDRVLNEF--RIGRASILVSHYNK--SQQERDRVLNEFRIGRASILVSHYNKSQQER 518 (779)
Q Consensus 451 ~-~~~~VI~-------y~~p~s~~~yiQR~G--RaGR~g~~~~~~~~--~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~ 518 (779)
. ...+||+ |+...-+ -..+.| |.-..+.+....+. +..-+.++++.+.+....++.+.++....
T Consensus 384 ~~lal~vIDEAHCVSqWgHdFRp--~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL-- 459 (941)
T KOG0351|consen 384 GLLALFVIDEAHCVSQWGHDFRP--SYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNL-- 459 (941)
T ss_pred CeeEEEEecHHHHhhhhcccccH--HHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCc--
Confidence 0 1113332 2211111 111222 22222233333332 22334556666666555555544443321
Q ss_pred HHhhhhhcccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhh
Q psy17912 519 DRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDR 598 (779)
Q Consensus 519 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (779)
.+.+-.. .......+..+-+..+-.+.+.||-|..+++||++.-+|+..|+-|+.. |.+-...+|..
T Consensus 460 -----~yeV~~k-----~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~Y---HAGl~~~~R~~ 526 (941)
T KOG0351|consen 460 -----KYEVSPK-----TDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFY---HAGLPPKERET 526 (941)
T ss_pred -----eEEEEec-----cCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhh---hcCCCHHHHHH
Confidence 0110000 0012234556677888888999999999999999999999999999999 99999999999
Q ss_pred HhhhhhcCCceeEEe
Q psy17912 599 VLNEFRIGRASILVS 613 (779)
Q Consensus 599 ~~~~~~~~~~~~~~~ 613 (779)
|...|-.|+..|.|.
T Consensus 527 Vq~~w~~~~~~VivA 541 (941)
T KOG0351|consen 527 VQKAWMSDKIRVIVA 541 (941)
T ss_pred HHHHHhcCCCeEEEE
Confidence 999999999888654
No 239
>KOG0343|consensus
Probab=97.29 E-value=0.0049 Score=68.77 Aligned_cols=211 Identities=19% Similarity=0.196 Sum_probs=116.6
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHH-HHHHHHHHHhcCCCcEEEEecccccccc-cCccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQ-ERDRVLNEFRIGRASILVSQYNKSQQER-DRVLNEF 447 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~-eR~~il~~F~~G~~~ILVAT~v~~~GID-ip~v~~~ 447 (779)
.+--+||..||++.|-++.+.|.+. .+.++.+-||...+ +++++ ..++|||||+ +|-+- +..--.+
T Consensus 140 DGlGalIISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi------~~mNILVCTP--GRLLQHmde~~~f 211 (758)
T KOG0343|consen 140 DGLGALIISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERI------SQMNILVCTP--GRLLQHMDENPNF 211 (758)
T ss_pred CCceeEEecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhh------hcCCeEEech--HHHHHHhhhcCCC
Confidence 4567999999999999999999874 57888888888754 33333 5899999998 66551 1100012
Q ss_pred ccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHH-HHHHHHhhhccccceeeccccccHHHH-HHh-hhh
Q psy17912 448 RIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQE-RDRVLNEFRIGRASILVSHYNKSQQER-DRV-LNE 524 (779)
Q Consensus 448 ~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e-~~~~l~e~~~~~~~il~~~~~~~~~~~-~~~-l~~ 524 (779)
......++|.+ . .+ |+-- +.-.+ -..++..+-..+..+++|-.....-.. .++ |..
T Consensus 212 ~t~~lQmLvLD--E----AD------R~LD---------MGFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~d 270 (758)
T KOG0343|consen 212 STSNLQMLVLD--E----AD------RMLD---------MGFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKD 270 (758)
T ss_pred CCCcceEEEec--c----HH------HHHH---------HhHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCC
Confidence 22333334443 0 00 0000 00001 112334444444555555332221111 111 111
Q ss_pred hc-ccc--------cc-hhhhcccccHHHHHHHHHHhhh---cceEEEEecccchhhHHHHHHhhcCccceeEeeeccch
Q psy17912 525 FR-IGR--------AS-ILVSHYNKSQQERDRVLNEFRI---GRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNK 591 (779)
Q Consensus 525 ~~-~~~--------~~-~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (779)
+. ++- ++ +...++...-+++=.+|=+|-. ..++|+|-.|.|...=+....+..+ |..+|+..||.-
T Consensus 271 P~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlr-pg~~l~~L~G~~ 349 (758)
T KOG0343|consen 271 PVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLR-PGIPLLALHGTM 349 (758)
T ss_pred CcEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcC-CCCceeeeccch
Confidence 11 110 01 1111222222233334444432 2378889888887777777766553 334444449999
Q ss_pred hhhhHhhHhhhhhcCCceeEEec
Q psy17912 592 SQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+|.-|--|+++|-.-++.+|.+.
T Consensus 350 ~Q~~R~ev~~~F~~~~~~vLF~T 372 (758)
T KOG0343|consen 350 SQKKRIEVYKKFVRKRAVVLFCT 372 (758)
T ss_pred hHHHHHHHHHHHHHhcceEEEee
Confidence 99999999999999999999764
No 240
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.24 E-value=0.00087 Score=65.81 Aligned_cols=80 Identities=15% Similarity=0.136 Sum_probs=57.8
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCC--eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec--ccccccccCccccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGW--AAVAIHGNKSQQERDRVLNEFRIGRASILVSQY--NKSQQERDRVLNEFRI 449 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~--~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~--v~~~GIDip~v~~~~~ 449 (779)
.++.+|||++|.+..+.+.+.++.... ....+.. ...++..+++.|+.++-.||+|+. .+.+|||+++-.
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~---- 81 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDL---- 81 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECES----
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCch----
Confidence 468999999999999999999987531 1122222 356889999999999999999998 999999988632
Q ss_pred ccceeEEEEcCCC
Q psy17912 450 GRASILVSQYKES 462 (779)
Q Consensus 450 ~~~~~~VI~y~~p 462 (779)
+..||....|
T Consensus 82 ---~r~vii~glP 91 (167)
T PF13307_consen 82 ---LRAVIIVGLP 91 (167)
T ss_dssp ---EEEEEEES--
T ss_pred ---hheeeecCCC
Confidence 4466665555
No 241
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.24 E-value=0.00081 Score=78.39 Aligned_cols=45 Identities=9% Similarity=0.033 Sum_probs=37.7
Q ss_pred CCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCC
Q psy17912 424 GRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGR 477 (779)
Q Consensus 424 G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR 477 (779)
...+.+.+--++-+|.|-|+|= .++-.....|..+-.|.+||.-|
T Consensus 482 ~plRFIFS~waLrEGWDNPNVF---------tIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 482 EPLRFIFSKWALREGWDNPNVF---------TICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred CcceeeeehhHHhhcCCCCCee---------EEEEecCCCcchHHHHHhcccee
Confidence 3578999999999999999863 44455677788999999999988
No 242
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=97.23 E-value=0.0056 Score=74.63 Aligned_cols=248 Identities=17% Similarity=0.218 Sum_probs=165.4
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccccccCcccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY-NKSQQERDRVLNEFR 448 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~-v~~~GIDip~v~~~~ 448 (779)
.+++|.|.|||.--|++=++.|++. .++|..++-=.+.+++..+++..++|+++|||.|. ++..+|-+.++.
T Consensus 642 ~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~FkdLG--- 718 (1139)
T COG1197 642 DGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVKFKDLG--- 718 (1139)
T ss_pred CCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcEEecCC---
Confidence 4689999999998888877777654 56788899999999999999999999999999996 666677666655
Q ss_pred cccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccccceeeccccccHHHHHHhhhhhc--
Q psy17912 449 IGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR-- 526 (779)
Q Consensus 449 ~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~-- 526 (779)
.++|+ =-||.| ...+|+.+-+..- ++=..+-...++.+....-.=+.+++
T Consensus 719 -----LlIID---------EEqRFG-------------Vk~KEkLK~Lr~~-VDvLTLSATPIPRTL~Msm~GiRdlSvI 770 (1139)
T COG1197 719 -----LLIID---------EEQRFG-------------VKHKEKLKELRAN-VDVLTLSATPIPRTLNMSLSGIRDLSVI 770 (1139)
T ss_pred -----eEEEe---------chhhcC-------------ccHHHHHHHHhcc-CcEEEeeCCCCcchHHHHHhcchhhhhc
Confidence 13333 125554 1122322222110 00000111112221111111111111
Q ss_pred ----ccccchhhhccc---ccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhH
Q psy17912 527 ----IGRASILVSHYN---KSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRV 599 (779)
Q Consensus 527 ----~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (779)
.+| +-+..|- ....=|+.++.|...|.-+--|.|-=.+-.++...|++. +|-|.|.|.||--...|=+.|
T Consensus 771 ~TPP~~R--~pV~T~V~~~d~~~ireAI~REl~RgGQvfYv~NrV~~Ie~~~~~L~~L-VPEarI~vaHGQM~e~eLE~v 847 (1139)
T COG1197 771 ATPPEDR--LPVKTFVSEYDDLLIREAILRELLRGGQVFYVHNRVESIEKKAERLREL-VPEARIAVAHGQMRERELEEV 847 (1139)
T ss_pred cCCCCCC--cceEEEEecCChHHHHHHHHHHHhcCCEEEEEecchhhHHHHHHHHHHh-CCceEEEEeecCCCHHHHHHH
Confidence 111 1111222 123467779999999888888888888899999999886 899999999999999999999
Q ss_pred hhhhhcCCceeEEec----------------------cccch--hHHhhhhhhhcccceeEEeec---cccchhHHhhhh
Q psy17912 600 LNEFRIGRASILVSH----------------------YNKSQ--QERDRVLNEFRIGRASILVSH---YNKSQQERDRVL 652 (779)
Q Consensus 600 ~~~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 652 (779)
+++|-.|+.-|||+- +--|| |-|-||=.--+.+-|-.|+-+ -++..+.|-.++
T Consensus 848 M~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~k~lT~~A~kRL~aI 927 (1139)
T COG1197 848 MLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQKALTEDAEKRLEAI 927 (1139)
T ss_pred HHHHHcCCCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccceEEEEEeecCccccCHHHHHHHHHH
Confidence 999999999999983 33344 677777666666666677764 345566777777
Q ss_pred hcc
Q psy17912 653 NEF 655 (779)
Q Consensus 653 ~~~ 655 (779)
++|
T Consensus 928 ~~~ 930 (1139)
T COG1197 928 ASF 930 (1139)
T ss_pred Hhh
Confidence 773
No 243
>PTZ00146 fibrillarin; Provisional
Probab=97.14 E-value=0.0055 Score=64.97 Aligned_cols=37 Identities=14% Similarity=0.186 Sum_probs=19.9
Q ss_pred CCCCCHHHHHHHHHHhcC--------CCEEEEccCCCChhHHHHH
Q psy17912 148 FQAPTAIQAQGWPIALSG--------CDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 148 ~~~p~~~Q~~~i~~il~g--------~dvii~apTGsGKTl~~~l 184 (779)
|-.-.|+++..-.+++.+ .+.++-.-+|+|=+..++.
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lA 151 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVS 151 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHH
Confidence 333445555555555433 2456666677876654444
No 244
>PF13245 AAA_19: Part of AAA domain
Probab=97.10 E-value=0.0019 Score=54.43 Aligned_cols=60 Identities=30% Similarity=0.302 Sum_probs=39.9
Q ss_pred HHHHHhc-CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHH
Q psy17912 158 GWPIALS-GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVA 221 (779)
Q Consensus 158 ~i~~il~-g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 221 (779)
++...+. +.-+++.+|.|||||.+..-.+...+.... .. +.++++++|++..+..+.+.+
T Consensus 2 av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~---~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARA---DP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhc---CC-CCeEEEECCCHHHHHHHHHHH
Confidence 3443333 444666999999999665554444442211 11 457999999999999887776
No 245
>PHA02653 RNA helicase NPH-II; Provisional
Probab=97.10 E-value=0.015 Score=69.15 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=48.4
Q ss_pred cceEEEEecccchhhHHHHHHhhc--CccceeEeeeccchhhhhHhhHhhhh-hcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEF--RIGRASILVSHYNKSQQERDRVLNEF-RIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 614 (779)
+...|+|++|++.|+++.+.|++. +++.+.+ ||+.+|. +.++++| +.|+..|+||-
T Consensus 395 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~L---HG~Lsq~--eq~l~~ff~~gk~kILVAT 453 (675)
T PHA02653 395 GSSGIVFVASVSQCEEYKKYLEKRLPIYDFYII---HGKVPNI--DEILEKVYSSKNPSIIIST 453 (675)
T ss_pred CCcEEEEECcHHHHHHHHHHHHhhcCCceEEec---cCCcCHH--HHHHHHHhccCceeEEecc
Confidence 457999999999999999999987 6777777 9999985 5788898 79999999873
No 246
>PRK00254 ski2-like helicase; Provisional
Probab=97.10 E-value=0.014 Score=70.97 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=45.2
Q ss_pred HHHHHhccCCCCcEEEEecchhHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 365 GLLSQIGSERTSKTIIFVETKRKADDITRSVRN---KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~---~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
.++..+.. .+.++|+.+|++..+.+.++.+.. .++.+..++|+.+...+. .++.+|+|+|+
T Consensus 59 ~il~~l~~-~~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~-------~~~~~IiV~Tp 122 (720)
T PRK00254 59 VMVNKLLR-EGGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMTTGDYDSTDEW-------LGKYDIIIATA 122 (720)
T ss_pred HHHHHHHh-cCCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEEeCCCCCchhh-------hccCCEEEEcH
Confidence 34444332 367899999999999999988764 478999999998764321 14678999995
No 247
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=97.09 E-value=0.015 Score=69.55 Aligned_cols=231 Identities=18% Similarity=0.229 Sum_probs=134.0
Q ss_pred cCCCCcEEEEecchhHHHHHHHHHHhC----C-CeEEE-EcCCCCHHHHHHHHHHHhcCCCcEEEEeccc-ccccc-cCc
Q psy17912 372 SERTSKTIIFVETKRKADDITRSVRNK----G-WAAVA-IHGNKSQQERDRVLNEFRIGRASILVSQYNK-SQQER-DRV 443 (779)
Q Consensus 372 ~~~~~kvLVF~~s~~~ae~L~~~L~~~----g-~~v~~-ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~-~~GID-ip~ 443 (779)
...++++++.+||...+.++++.|++. + +.+.. ||+.|+..+++++++.|.+|..+|||+|+.+ ..-.+ +..
T Consensus 122 a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~ 201 (1187)
T COG1110 122 AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSK 201 (1187)
T ss_pred HhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc
Confidence 445789999999999999999998864 2 44433 9999999999999999999999999999743 11111 110
Q ss_pred ccccccccceeEEEEcC----CCCCHHHHHHHhccCCCCCCeE--------EEEEcChHHHHH-HHH------hhhcccc
Q psy17912 444 LNEFRIGRASILVSQYK----ESQQKRDRVLNEFRIGRASILV--------SHYNKSQQERDR-VLN------EFRIGRA 504 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y~----~p~s~~~yiQR~GRaGR~g~~~--------~~~~~~~~e~~~-~l~------e~~~~~~ 504 (779)
.+-..++|-+-| ...+....+...|=..-.=... ..+.....++.+ .+. +....+.
T Consensus 202 -----~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~ 276 (1187)
T COG1110 202 -----LKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKL 276 (1187)
T ss_pred -----cCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCC
Confidence 001112222222 1233333333333110000000 000000011111 111 1111222
Q ss_pred -ceeecc-ccccHH---HHHHhhhhhcccccchhhhc----cc--ccHHHHHHHHHHhhhcceEEEEecc---cchhhHH
Q psy17912 505 -SILVSH-YNKSQQ---ERDRVLNEFRIGRASILVSH----YN--KSQQERDRVLNEFRIGRASILVSHY---NKSQQER 570 (779)
Q Consensus 505 -~il~~~-~~~~~~---~~~~~l~~~~~~~~~~~~~~----~~--~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~ 570 (779)
.++++. .-+... .-=+.|-.|.+|+....+-. |. ..-++--.++..+-.|. |+|.++ ..-.+|+
T Consensus 277 g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~LRNIvD~y~~~~~~e~~~elvk~lG~Gg--LIfV~~d~G~e~aeel 354 (1187)
T COG1110 277 GILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVDIYVESESLEKVVELVKKLGDGG--LIFVPIDYGREKAEEL 354 (1187)
T ss_pred ceEEEeeccCCCCCchHHHHHHHhCCccCccchhhhheeeeeccCccHHHHHHHHHHhCCCe--EEEEEcHHhHHHHHHH
Confidence 233332 222222 22233345677776543322 22 23445555888877764 888899 7778999
Q ss_pred HHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEE---ecccc
Q psy17912 571 DRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILV---SHYNK 617 (779)
Q Consensus 571 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 617 (779)
...|+..|+.|.++ |.. ....|+.|.-|+..+|| |+|+.
T Consensus 355 ~e~Lr~~Gi~a~~~---~a~-----~~~~le~F~~GeidvLVGvAsyYG~ 396 (1187)
T COG1110 355 AEYLRSHGINAELI---HAE-----KEEALEDFEEGEVDVLVGVASYYGV 396 (1187)
T ss_pred HHHHHhcCceEEEe---ecc-----chhhhhhhccCceeEEEEecccccc
Confidence 99999999999999 763 36789999999999997 56664
No 248
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.07 E-value=0.0041 Score=75.20 Aligned_cols=122 Identities=17% Similarity=0.137 Sum_probs=74.8
Q ss_pred CCCCHHHHHHHHHHhcC-CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhccc
Q psy17912 149 QAPTAIQAQGWPIALSG-CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSA 227 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g-~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 227 (779)
..+++-|.+|+..++.+ +-+++.|+.|+|||.. +-.+..+... .+..+++++||--.|..+.+ .
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtl--l~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~~-------~ 415 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTM--LKAAREAWEA------AGYRVIGAALSGKAAEGLQA-------E 415 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHH--HHHHHHHHHh------CCCeEEEEeCcHHHHHHHHh-------c
Confidence 45899999999999874 6689999999999954 3333333332 25679999999776654332 1
Q ss_pred CCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc-CCC
Q psy17912 228 TATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI-RPD 306 (779)
Q Consensus 228 ~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l-~~~ 306 (779)
.++.. .|..+++.....+...+...++||||||-.+... .+..++... ...
T Consensus 416 ~g~~a------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~----~~~~Ll~~~~~~~ 467 (744)
T TIGR02768 416 SGIES------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR----QMARVLKEAEEAG 467 (744)
T ss_pred cCCce------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHH----HHHHHHHHHHhcC
Confidence 22211 1222222212223334667899999999876532 344455432 345
Q ss_pred CceEEee
Q psy17912 307 RQVLMWS 313 (779)
Q Consensus 307 ~qilllS 313 (779)
.++|++.
T Consensus 468 ~kliLVG 474 (744)
T TIGR02768 468 AKVVLVG 474 (744)
T ss_pred CEEEEEC
Confidence 6666665
No 249
>KOG1805|consensus
Probab=97.07 E-value=0.0029 Score=74.88 Aligned_cols=143 Identities=21% Similarity=0.128 Sum_probs=90.0
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCC-EEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEE
Q psy17912 128 QHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCD-LVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLV 206 (779)
Q Consensus 128 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~d-vii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLi 206 (779)
.......+.|.+... -+..++.-|++|+-.++..+| .+|.|=+|+|||.+....+-..+.. |.+||+
T Consensus 651 ~~~~~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~~--------gkkVLL 718 (1100)
T KOG1805|consen 651 VDALSKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVAL--------GKKVLL 718 (1100)
T ss_pred hcccccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHHc--------CCeEEE
Confidence 333334566666553 235788999999999988776 7888999999997654443332222 558899
Q ss_pred EccCHHHHHHHHHHHHHhcccCCceEEEE---------------eCCCCC--hhhHHHhhcCCeEEEeChHHHHHHHHcC
Q psy17912 207 LAPTRELAQQIETVANDFGSATATRVACV---------------FGGAPK--GPQVKALQTGAEIVIATPGRLIDYLEQG 269 (779)
Q Consensus 207 l~Ptr~La~Q~~~~~~~~~~~~~l~v~~~---------------~gg~~~--~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~ 269 (779)
.+-|..-+..+.-.++.+.. ...-+ +.+.+. -+..+...+.+.||.||--.+.+.+.
T Consensus 719 tsyThsAVDNILiKL~~~~i----~~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf-- 792 (1100)
T KOG1805|consen 719 TSYTHSAVDNILIKLKGFGI----YILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF-- 792 (1100)
T ss_pred EehhhHHHHHHHHHHhccCc----ceeecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh--
Confidence 98888877777666665532 22111 111111 11223334567888888644444443
Q ss_pred CcCCCCeeEEEEccchhhhcC
Q psy17912 270 TINLHRTSYLVLDEADRMLDM 290 (779)
Q Consensus 270 ~~~l~~i~~lViDEaH~l~~~ 290 (779)
..+.++|.|||||-.+...
T Consensus 793 --~~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 793 --VNRQFDYCIIDEASQILLP 811 (1100)
T ss_pred --hccccCEEEEccccccccc
Confidence 3567999999999877643
No 250
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.06 E-value=0.0043 Score=76.26 Aligned_cols=124 Identities=21% Similarity=0.174 Sum_probs=77.9
Q ss_pred CCCCHHHHHHHHHHhcCCC-EEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhccc
Q psy17912 149 QAPTAIQAQGWPIALSGCD-LVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSA 227 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~d-vii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 227 (779)
..+++-|.+++..++.+++ +++.|+.|+|||.+ +-.+...+.. .+..++.++||-..|..+.+ .
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~-------~G~~V~~~ApTGkAA~~L~e-------~ 409 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA-------AGYEVRGAALSGIAAENLEG-------G 409 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH-------cCCeEEEecCcHHHHHHHhh-------c
Confidence 3689999999999998654 78999999999964 3333333332 25689999999776653321 1
Q ss_pred CCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc-CCC
Q psy17912 228 TATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI-RPD 306 (779)
Q Consensus 228 ~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l-~~~ 306 (779)
.++.. .|..+|+.-...+...+...++||||||-.+... .+..++... ...
T Consensus 410 tGi~a------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~----~m~~LL~~a~~~g 461 (988)
T PRK13889 410 SGIAS------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR----QLERVLSHAADAG 461 (988)
T ss_pred cCcch------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCHH----HHHHHHHhhhhCC
Confidence 22211 1333333222223334667889999999865533 455566543 456
Q ss_pred CceEEeecc
Q psy17912 307 RQVLMWSAT 315 (779)
Q Consensus 307 ~qilllSAT 315 (779)
.++|++.=+
T Consensus 462 arvVLVGD~ 470 (988)
T PRK13889 462 AKVVLVGDP 470 (988)
T ss_pred CEEEEECCH
Confidence 777777644
No 251
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=97.04 E-value=0.0034 Score=74.20 Aligned_cols=63 Identities=10% Similarity=0.141 Sum_probs=58.4
Q ss_pred HHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 547 VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 547 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+.+....|++.|+||+|...++.+.+.|.+.|+|...+ |++ |.||+..+-.|+.|+..|+|+-
T Consensus 398 i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~~L---na~--q~~rEa~ii~~ag~~g~VtIAT 460 (745)
T TIGR00963 398 IKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHNVL---NAK--NHEREAEIIAQAGRKGAVTIAT 460 (745)
T ss_pred HHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEe---eCC--hHHHHHHHHHhcCCCceEEEEe
Confidence 55566899999999999999999999999999999988 998 9999999999999999999974
No 252
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.03 E-value=0.0078 Score=66.86 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=71.1
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEE-EEccC-HHHHHHHHHHHHHhcccCCceEEEEeCCCCChh
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVL-VLAPT-RELAQQIETVANDFGSATATRVACVFGGAPKGP 243 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vL-il~Pt-r~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~ 243 (779)
+.++++||||+|||.+..-.+........ ..+.++. +-+-+ +.-+..+ ++.++...++.+..
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~----~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~--------- 238 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSD----DKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKA--------- 238 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhc----cCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEe---------
Confidence 56889999999999876544332222110 0122333 33333 3444332 45555545554422
Q ss_pred hHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC-chHHHHHHHhhcCCC-CceEEeeccccH-HH
Q psy17912 244 QVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG-FEPQIRKIIGQIRPD-RQVLMWSATWPK-EV 320 (779)
Q Consensus 244 ~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~-f~~~l~~il~~l~~~-~qilllSAT~~~-~v 320 (779)
+-++..+...+.. +.++++|+||++.++.... ....+..++....++ -.++.+|||... .+
T Consensus 239 ------------~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~ 302 (388)
T PRK12723 239 ------------IESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDV 302 (388)
T ss_pred ------------eCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHH
Confidence 1234444444432 4678999999999865321 123445555555443 467889999853 44
Q ss_pred HHHHHHh
Q psy17912 321 QKLAEDF 327 (779)
Q Consensus 321 ~~l~~~~ 327 (779)
.+.+..|
T Consensus 303 ~~~~~~~ 309 (388)
T PRK12723 303 KEIFHQF 309 (388)
T ss_pred HHHHHHh
Confidence 4455554
No 253
>PRK04296 thymidine kinase; Provisional
Probab=97.02 E-value=0.0022 Score=64.37 Aligned_cols=113 Identities=14% Similarity=0.120 Sum_probs=58.9
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhh
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQ 244 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~ 244 (779)
|.-.++.||+|+|||...+-.+...... +.+++++-|...--. ....+....++...
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~--------g~~v~i~k~~~d~~~----~~~~i~~~lg~~~~----------- 58 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEER--------GMKVLVFKPAIDDRY----GEGKVVSRIGLSRE----------- 58 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHc--------CCeEEEEeccccccc----cCCcEecCCCCccc-----------
Confidence 3457889999999996655444433322 447888866311000 00111122222110
Q ss_pred HHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecc
Q psy17912 245 VKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSAT 315 (779)
Q Consensus 245 ~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT 315 (779)
.+.+..+..+++.+.. .-.++++|||||||.+. ..++..++..+.+.-..+++|+-
T Consensus 59 --------~~~~~~~~~~~~~~~~---~~~~~dvviIDEaq~l~----~~~v~~l~~~l~~~g~~vi~tgl 114 (190)
T PRK04296 59 --------AIPVSSDTDIFELIEE---EGEKIDCVLIDEAQFLD----KEQVVQLAEVLDDLGIPVICYGL 114 (190)
T ss_pred --------ceEeCChHHHHHHHHh---hCCCCCEEEEEccccCC----HHHHHHHHHHHHHcCCeEEEEec
Confidence 1223455555555543 23467899999998643 23355666664444444445443
No 254
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=97.01 E-value=0.0011 Score=78.56 Aligned_cols=61 Identities=18% Similarity=0.287 Sum_probs=57.1
Q ss_pred hhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 551 FRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
...|...|+||+|++.++++...|++.|++++.+ ||+.+|.||..++++|+.|+..|||+.
T Consensus 439 ~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~l---h~~~~~~eR~~~l~~fr~G~i~VLV~t 499 (655)
T TIGR00631 439 VARNERVLVTTLTKKMAEDLTDYLKELGIKVRYL---HSEIDTLERVEIIRDLRLGEFDVLVGI 499 (655)
T ss_pred HcCCCEEEEEECCHHHHHHHHHHHhhhccceeee---eCCCCHHHHHHHHHHHhcCCceEEEEc
Confidence 3568889999999999999999999999999998 999999999999999999999999764
No 255
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=97.00 E-value=0.00088 Score=82.02 Aligned_cols=58 Identities=21% Similarity=0.221 Sum_probs=53.3
Q ss_pred cceEEEEecccchhhHHHHHHh-hcCccceeEeeeccchhhhhHhhHhhhhhcC--CceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLN-EFRIGRASILVSHYNKSQQERDRVLNEFRIG--RASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 614 (779)
+.+.||||+|+..++.+...|+ ..||+++.| ||+.+|.||++++++|+.+ .+.|||+-
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~i---hG~~s~~eR~~~~~~F~~~~~~~~VLIsT 553 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALREREGIRAAVF---HEGMSIIERDRAAAYFADEEDGAQVLLCS 553 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhccCeeEEEE---ECCCCHHHHHHHHHHHhcCCCCccEEEec
Confidence 5689999999999999999995 679999999 9999999999999999985 58999884
No 256
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=96.99 E-value=0.0048 Score=74.12 Aligned_cols=62 Identities=10% Similarity=0.042 Sum_probs=57.3
Q ss_pred HHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 547 VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 547 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
+.+....|++.|+||.|....+.+.+.|.+.|+|...+ |++..|+||+-|++.|+.|. |+|+
T Consensus 437 i~~~~~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vL---nak~~q~Ea~iia~Ag~~G~--VtIA 498 (896)
T PRK13104 437 VRECGVRKQPVLVGTVSIEASEFLSQLLKKENIKHQVL---NAKFHEKEAQIIAEAGRPGA--VTIA 498 (896)
T ss_pred HHHHHhCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEee---cCCCChHHHHHHHhCCCCCc--EEEe
Confidence 55566899999999999999999999999999999999 99999999999999999996 6665
No 257
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.97 E-value=0.027 Score=69.96 Aligned_cols=124 Identities=17% Similarity=0.131 Sum_probs=77.4
Q ss_pred CCCCHHHHHHHHHHhc-CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhccc
Q psy17912 149 QAPTAIQAQGWPIALS-GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSA 227 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~-g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 227 (779)
..+++-|.+++..+.. ++-+++.|+.|+|||.+. -++...+.. .+..++.++||-.-|..+.+ .
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~-------~G~~V~g~ApTgkAA~~L~e-------~ 444 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA-------AGYRVVGGALAGKAAEGLEK-------E 444 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH-------cCCeEEEEcCcHHHHHHHHH-------h
Confidence 4689999999998864 566899999999999442 223333322 25689999999776654322 1
Q ss_pred CCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcC-CC
Q psy17912 228 TATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIR-PD 306 (779)
Q Consensus 228 ~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~-~~ 306 (779)
.++... |..+|+.....+...+..-++||||||-.+. ...+..++.... ..
T Consensus 445 ~Gi~a~------------------------TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~----~~~m~~Ll~~~~~~g 496 (1102)
T PRK13826 445 AGIQSR------------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVA----SRQMALFVEAVTRAG 496 (1102)
T ss_pred hCCCee------------------------eHHHHHhhhccCccCCCCCcEEEEECcccCC----HHHHHHHHHHHHhcC
Confidence 233221 2222211111223346667899999998655 335556666654 46
Q ss_pred CceEEeecc
Q psy17912 307 RQVLMWSAT 315 (779)
Q Consensus 307 ~qilllSAT 315 (779)
.++|++.=+
T Consensus 497 arvVLVGD~ 505 (1102)
T PRK13826 497 AKLVLVGDP 505 (1102)
T ss_pred CEEEEECCH
Confidence 777777644
No 258
>KOG0347|consensus
Probab=96.92 E-value=0.004 Score=69.45 Aligned_cols=206 Identities=14% Similarity=0.216 Sum_probs=120.4
Q ss_pred EEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccccc---Ccccccccc
Q psy17912 378 TIIFVETKRKADDITRSVRN----KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERD---RVLNEFRIG 450 (779)
Q Consensus 378 vLVF~~s~~~ae~L~~~L~~----~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDi---p~v~~~~~~ 450 (779)
.|||+||++.|.++.+.|.. .++.+..|.|||....++++++. .-.|+|||+ +|-+-+ .+....++.
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~----~p~IVVATP--GRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQ----RPDIVVATP--GRLWELIEEDNTHLGNFK 339 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhc----CCCEEEecc--hHHHHHHHhhhhhhhhhh
Confidence 89999999999999999975 38999999999999999999986 668999998 333310 000011222
Q ss_pred cceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhh-----ccccceeeccc--------------
Q psy17912 451 RASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR-----IGRASILVSHY-------------- 511 (779)
Q Consensus 451 ~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~-----~~~~~il~~~~-------------- 511 (779)
....+|++-. ..++| .|.| .|...+|+.+. .-+..+++|-.
T Consensus 340 ~vkcLVlDEa-----DRmve----------kghF-----~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k 399 (731)
T KOG0347|consen 340 KVKCLVLDEA-----DRMVE----------KGHF-----EELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRK 399 (731)
T ss_pred hceEEEEccH-----HHHhh----------hccH-----HHHHHHHHHhhhhhcccccceEEEEEEeehhhcChhHHhhh
Confidence 3333444410 11111 1111 01111221111 11122222210
Q ss_pred --c---ccHHHHHHhhhhhcccccchhhhcccccHHHHHHH----HHH-----------h--hhcceEEEEecccchhhH
Q psy17912 512 --N---KSQQERDRVLNEFRIGRASILVSHYNKSQQERDRV----LNE-----------F--RIGRASILVSHYNKSQQE 569 (779)
Q Consensus 512 --~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----l~~-----------~--~~~~~~~~~~~~~~~~~~ 569 (779)
. ...+-.+.++....+-... .+...+.+..--..+ +++ | +--...|+|||.-...--
T Consensus 400 ~~~k~~~~~~kiq~Lmk~ig~~~kp-kiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKR 478 (731)
T KOG0347|consen 400 KKDKEDELNAKIQHLMKKIGFRGKP-KIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKR 478 (731)
T ss_pred ccchhhhhhHHHHHHHHHhCccCCC-eeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHH
Confidence 0 1112333444433332222 111111111111111 111 0 111268999999999999
Q ss_pred HHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 570 RDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
++-+|+..++|++-| |..--|..|=+=|..|+.-..-+|+.
T Consensus 479 Lt~~L~~L~i~p~~L---HA~M~QKqRLknLEkF~~~~~~VLia 519 (731)
T KOG0347|consen 479 LTVLLNNLDIPPLPL---HASMIQKQRLKNLEKFKQSPSGVLIA 519 (731)
T ss_pred HHHHHhhcCCCCchh---hHHHHHHHHHHhHHHHhcCCCeEEEe
Confidence 999999999999999 99999999999999999988888864
No 259
>PRK09694 helicase Cas3; Provisional
Probab=96.90 E-value=0.042 Score=67.14 Aligned_cols=72 Identities=22% Similarity=0.320 Sum_probs=59.0
Q ss_pred HHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhH----hhHhhhh-hcCCc---eeEEec
Q psy17912 543 ERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQER----DRVLNEF-RIGRA---SILVSH 614 (779)
Q Consensus 543 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~---~~~~~~ 614 (779)
-.+.+++....|.+.++|+||.+.++++-+.|++.+-+...+.+.|+.-.+.+| ++|++.| |.|+. .|||+-
T Consensus 549 ~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaT 628 (878)
T PRK09694 549 LLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVAT 628 (878)
T ss_pred HHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEEC
Confidence 345677778889999999999999999999999875333445566999999988 6899999 88875 588885
No 260
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.86 E-value=0.0051 Score=65.88 Aligned_cols=142 Identities=19% Similarity=0.283 Sum_probs=89.2
Q ss_pred cCCCCCCHHHHHHHHHHhcCC--CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHH
Q psy17912 146 MGFQAPTAIQAQGWPIALSGC--DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAND 223 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g~--dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 223 (779)
+|+..-+..|.-|+..++... =|.+.++.|+|||+.++.+.+......+.. .++||.=|+..+.+++
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y-----~KiiVtRp~vpvG~dI------ 292 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRY-----RKIIVTRPTVPVGEDI------ 292 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhh-----ceEEEecCCcCccccc------
Confidence 577777888999999998664 367889999999999999888887775433 3678877877654322
Q ss_pred hcccCCceEEEEeCCCCCh---------hhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCC--------e--eEEEEccc
Q psy17912 224 FGSATATRVACVFGGAPKG---------PQVKALQTGAEIVIATPGRLIDYLEQGTINLHR--------T--SYLVLDEA 284 (779)
Q Consensus 224 ~~~~~~l~v~~~~gg~~~~---------~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~--------i--~~lViDEa 284 (779)
+.+-|....+ +....+. +.-=++-+.+...+....+.+.. + .+||||||
T Consensus 293 ---------GfLPG~eEeKm~PWmq~i~DnLE~L~---~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEa 360 (436)
T COG1875 293 ---------GFLPGTEEEKMGPWMQAIFDNLEVLF---SPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEA 360 (436)
T ss_pred ---------CcCCCchhhhccchHHHHHhHHHHHh---cccccchHHHHHHHhccceeeeeeeeecccccccceEEEehh
Confidence 1111111000 0011111 11112234444444444332222 1 68999999
Q ss_pred hhhhcCCchHHHHHHHhhcCCCCceEEeec
Q psy17912 285 DRMLDMGFEPQIRKIIGQIRPDRQVLMWSA 314 (779)
Q Consensus 285 H~l~~~~f~~~l~~il~~l~~~~qilllSA 314 (779)
+.+- ..++..|+....+..+++++.-
T Consensus 361 QNLT----pheikTiltR~G~GsKIVl~gd 386 (436)
T COG1875 361 QNLT----PHELKTILTRAGEGSKIVLTGD 386 (436)
T ss_pred hccC----HHHHHHHHHhccCCCEEEEcCC
Confidence 9765 5588999999999999888653
No 261
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=96.85 E-value=0.048 Score=72.49 Aligned_cols=237 Identities=14% Similarity=0.192 Sum_probs=123.8
Q ss_pred CCCHHHHHHHHHHhcC--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhccc
Q psy17912 150 APTAIQAQGWPIALSG--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSA 227 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 227 (779)
.+++-|.+++..++.. +-.++.++.|+|||.+ +-.+..+... .|..+++++||-.-+..+.+...
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~--l~~l~~~~~~------~G~~V~~lAPTgrAA~~L~e~~g----- 495 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEI--AQLLLHLASE------QGYEIQIITAGSLSAQELRQKIP----- 495 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHH--HHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHHhc-----
Confidence 5789999999999875 5689999999999944 3333333332 25689999999887765544321
Q ss_pred CCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc-CCC
Q psy17912 228 TATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI-RPD 306 (779)
Q Consensus 228 ~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l-~~~ 306 (779)
+....+. .....+.. .....|...|+ .....+..-++||||||-.+. ...+..++... +.+
T Consensus 496 --~~A~Ti~------~~l~~l~~--~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~----~~~~~~Ll~~a~~~g 557 (1960)
T TIGR02760 496 --RLASTFI------TWVKNLFN--DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLS----NNELLKLIDKAEQHN 557 (1960)
T ss_pred --chhhhHH------HHHHhhcc--cccchhHHHhh----cccCCCCCCCEEEEECCCCCC----HHHHHHHHHHHhhcC
Confidence 1100000 00000111 11122333333 222345677899999998765 34666677655 467
Q ss_pred CceEEeecc--ccH----HHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEE
Q psy17912 307 RQVLMWSAT--WPK----EVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTII 380 (779)
Q Consensus 307 ~qilllSAT--~~~----~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLV 380 (779)
.++|++.=+ +|. .+..++.......+.+. ... .....+ .+.......+...+......+.. ....++|
T Consensus 558 arvVlvGD~~QL~sV~aG~~f~~L~~~gv~t~~l~--~i~-rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~-~r~~tli 631 (1960)
T TIGR02760 558 SKLILLNDSAQRQGMSAGSAIDLLKEGGVTTYAWV--DTK-QQKASV--EISEAVDKLRVDYIASAWLDLTP-DRQNSQV 631 (1960)
T ss_pred CEEEEEcChhhcCccccchHHHHHHHCCCcEEEee--ccc-ccCcce--eeeccCchHHHHHHHHHHHhccc-ccCceEE
Confidence 888888655 221 22333333222211111 111 001111 11111122222233333333322 3456999
Q ss_pred EecchhHHHHHHHHHHh----CC------CeEEEEc-CCCCHHHHHHHHHHHhcC
Q psy17912 381 FVETKRKADDITRSVRN----KG------WAAVAIH-GNKSQQERDRVLNEFRIG 424 (779)
Q Consensus 381 F~~s~~~ae~L~~~L~~----~g------~~v~~ih-g~~~~~eR~~il~~F~~G 424 (779)
+..+.++...|....+. .| .....+. ..++..++... ..|+.|
T Consensus 632 v~~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~G 685 (1960)
T TIGR02760 632 LATTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQG 685 (1960)
T ss_pred EcCCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCC
Confidence 99999888888887763 22 2233332 35666666643 555543
No 262
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.84 E-value=0.002 Score=76.93 Aligned_cols=60 Identities=18% Similarity=0.332 Sum_probs=56.7
Q ss_pred hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 552 RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+.|...||||+|++.++.+...|.+.|+++..+ ||+.+|.||+.++++|+.|+..|+|+.
T Consensus 444 ~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~---h~~~~~~~R~~~l~~f~~g~i~vlV~t 503 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYL---HSDIDTLERVEIIRDLRLGEFDVLVGI 503 (652)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEE---ECCCCHHHHHHHHHHHHcCCceEEEEe
Confidence 458889999999999999999999999999998 999999999999999999999999764
No 263
>PRK08181 transposase; Validated
Probab=96.82 E-value=0.013 Score=62.09 Aligned_cols=110 Identities=19% Similarity=0.199 Sum_probs=58.1
Q ss_pred HHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCC
Q psy17912 161 IALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAP 240 (779)
Q Consensus 161 ~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~ 240 (779)
.+..+++++++||+|+|||......+. .+.. .+..++++ +..+|+.++......
T Consensus 102 ~~~~~~nlll~Gp~GtGKTHLa~Aia~-~a~~-------~g~~v~f~-~~~~L~~~l~~a~~~----------------- 155 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSHLAAAIGL-ALIE-------NGWRVLFT-RTTDLVQKLQVARRE----------------- 155 (269)
T ss_pred HHhcCceEEEEecCCCcHHHHHHHHHH-HHHH-------cCCceeee-eHHHHHHHHHHHHhC-----------------
Confidence 445788999999999999954332222 2222 13345444 445566544321100
Q ss_pred ChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCc-hHHHHHHHhhcCCCCceEEeeccccHH
Q psy17912 241 KGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGF-EPQIRKIIGQIRPDRQVLMWSATWPKE 319 (779)
Q Consensus 241 ~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f-~~~l~~il~~l~~~~qilllSAT~~~~ 319 (779)
.+...++.. +.++++|||||.+......+ ...+..++........+|+.|-..+.+
T Consensus 156 ----------------~~~~~~l~~-------l~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~~~~ 212 (269)
T PRK08181 156 ----------------LQLESAIAK-------LDKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQPFGE 212 (269)
T ss_pred ----------------CcHHHHHHH-------HhcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCCHHH
Confidence 022222222 44678999999997644322 234555555433344555555544443
No 264
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.80 E-value=0.028 Score=63.60 Aligned_cols=142 Identities=20% Similarity=0.176 Sum_probs=73.5
Q ss_pred EEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh-cccCCceEEEEeCCCCCh----hh
Q psy17912 170 AIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF-GSATATRVACVFGGAPKG----PQ 244 (779)
Q Consensus 170 i~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~-~~~~~l~v~~~~gg~~~~----~~ 244 (779)
..+.||||||++..-.++....+. ....|+.|......+.....+..- ...+-+.-...+++...+ ..
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg-------yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG-------YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc-------hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 457899999988766666554431 224677776655555433222110 000000000011111110 00
Q ss_pred HHHhhcCCeEEEeChHHHHHHHHcCC---c---CCCCeeE-EEEccchhhhcCC-------------chHHHHHHHhhcC
Q psy17912 245 VKALQTGAEIVIATPGRLIDYLEQGT---I---NLHRTSY-LVLDEADRMLDMG-------------FEPQIRKIIGQIR 304 (779)
Q Consensus 245 ~~~l~~~~~IiV~Tpe~Ll~~l~~~~---~---~l~~i~~-lViDEaH~l~~~~-------------f~~~l~~il~~l~ 304 (779)
......+..|.++|.+.|...+.+.. + ++.+..+ ++-||||++-... +...+...+. -.
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~-~n 153 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALE-QN 153 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHh-cC
Confidence 01123457899999999987765432 2 2444444 5679999986422 2222222222 24
Q ss_pred CCCceEEeeccccHH
Q psy17912 305 PDRQVLMWSATWPKE 319 (779)
Q Consensus 305 ~~~qilllSAT~~~~ 319 (779)
++.-++.+|||.|++
T Consensus 154 kd~~~lef~at~~k~ 168 (812)
T COG3421 154 KDNLLLEFSATIPKE 168 (812)
T ss_pred CCceeehhhhcCCcc
Confidence 566788899999843
No 265
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.79 E-value=0.0061 Score=67.16 Aligned_cols=131 Identities=20% Similarity=0.197 Sum_probs=66.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc-cC-HHHHHHHHHHHHHhcccCCceEEEEeCCCCC
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA-PT-RELAQQIETVANDFGSATATRVACVFGGAPK 241 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~-Pt-r~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~ 241 (779)
.+..++++||||+|||.+....+........ ..++.++. .+ +.-+. +.++.+++..++.+..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G------~~~V~lit~D~~R~ga~---EqL~~~a~~~gv~~~~------- 199 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFG------ASKVALLTTDSYRIGGH---EQLRIFGKILGVPVHA------- 199 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------CCeEEEEecccccccHH---HHHHHHHHHcCCceEe-------
Confidence 3568999999999999876554444332210 12333333 22 11122 3333443333443322
Q ss_pred hhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC-chHHHHHHHhhcCCCCceEEeeccccHHH
Q psy17912 242 GPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG-FEPQIRKIIGQIRPDRQVLMWSATWPKEV 320 (779)
Q Consensus 242 ~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~-f~~~l~~il~~l~~~~qilllSAT~~~~v 320 (779)
+.+++.+...+. .+.+.++|+||++-+..... ....+..+.....+...++++|||...+.
T Consensus 200 --------------~~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 200 --------------VKDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred --------------cCCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 233333333333 25567899999997543221 22223333222233445888999985443
Q ss_pred -HHHHHHhc
Q psy17912 321 -QKLAEDFL 328 (779)
Q Consensus 321 -~~l~~~~l 328 (779)
...+..|.
T Consensus 262 l~evi~~f~ 270 (374)
T PRK14722 262 LNEVVQAYR 270 (374)
T ss_pred HHHHHHHHH
Confidence 44555553
No 266
>KOG4284|consensus
Probab=96.78 E-value=0.0032 Score=71.23 Aligned_cols=220 Identities=15% Similarity=0.135 Sum_probs=125.6
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNK-----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRI 449 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~-----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~ 449 (779)
....+|.+||++-+.++.+.+.+. |+.|-++-||.+-+.-..-+ .+.+|+|.|+ +|=..+-..+.++.
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rl-----k~~rIvIGtP--GRi~qL~el~~~n~ 165 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRL-----KQTRIVIGTP--GRIAQLVELGAMNM 165 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhh-----hhceEEecCc--hHHHHHHHhcCCCc
Confidence 456899999999999999988764 67888888998754332223 3788999998 44333222222333
Q ss_pred ccceeEEEEcCCC-----CCHHHHHHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeeccccc-cHHHHHHhh
Q psy17912 450 GRASILVSQYKES-----QQKRDRVLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNK-SQQERDRVL 522 (779)
Q Consensus 450 ~~~~~~VI~y~~p-----~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~-~~~~~~~~l 522 (779)
+..-.+|++ ... .+..+-+.-+=-+.-......++....++. +..|.+|-.+-+-+-.+.-.. -...++.+.
T Consensus 166 s~vrlfVLD-EADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~ 244 (980)
T KOG4284|consen 166 SHVRLFVLD-EADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVV 244 (980)
T ss_pred cceeEEEec-cHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheee
Confidence 332223332 111 111111111111111122333444333333 335555533322111110000 000111110
Q ss_pred hhhcccccchhhhcccccHH------HHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhH
Q psy17912 523 NEFRIGRASILVSHYNKSQQ------ERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQER 596 (779)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 596 (779)
...+..+...+ .-..+++...--+ +|+||+.---||-+.-.|...|+|+-.| -|+-+|.+|
T Consensus 245 ---------~~~s~nnsveemrlklq~L~~vf~~ipy~Q-AlVF~~~~sra~~~a~~L~ssG~d~~~I---SgaM~Q~~R 311 (980)
T KOG4284|consen 245 ---------AKCSPNNSVEEMRLKLQKLTHVFKSIPYVQ-ALVFCDQISRAEPIATHLKSSGLDVTFI---SGAMSQKDR 311 (980)
T ss_pred ---------eccCCcchHHHHHHHHHHHHHHHhhCchHH-HHhhhhhhhhhhHHHHHhhccCCCeEEe---ccccchhHH
Confidence 11111222222 2223455555445 7899999999999999999999999999 999999999
Q ss_pred hhHhhhhhcCCceeEEecc
Q psy17912 597 DRVLNEFRIGRASILVSHY 615 (779)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~ 615 (779)
--++..+|.=+..||||.-
T Consensus 312 l~a~~~lr~f~~rILVsTD 330 (980)
T KOG4284|consen 312 LLAVDQLRAFRVRILVSTD 330 (980)
T ss_pred HHHHHHhhhceEEEEEecc
Confidence 9999999999999999953
No 267
>PRK01172 ski2-like helicase; Provisional
Probab=96.74 E-value=0.028 Score=67.73 Aligned_cols=65 Identities=14% Similarity=0.175 Sum_probs=52.3
Q ss_pred HhhhcceEEEEecccchhhHHHHHHhhcCc--cc--------------------eeEeeeccchhhhhHhhHhhhhhcCC
Q psy17912 550 EFRIGRASILVSHYNKSQQERDRVLNEFRI--GR--------------------ASILVSHYNKSQQERDRVLNEFRIGR 607 (779)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (779)
....+...|+|++|.+.|+++.+.|.+..- +. ..|.+-||+-+++||..|.+.|+.|.
T Consensus 232 ~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~ 311 (674)
T PRK01172 232 TVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRY 311 (674)
T ss_pred HHhCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCC
Confidence 356788899999999999999888865411 00 12445599999999999999999999
Q ss_pred ceeEEec
Q psy17912 608 ASILVSH 614 (779)
Q Consensus 608 ~~~~~~~ 614 (779)
..|||+-
T Consensus 312 i~VLvaT 318 (674)
T PRK01172 312 IKVIVAT 318 (674)
T ss_pred CeEEEec
Confidence 9999874
No 268
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.73 E-value=0.0036 Score=58.25 Aligned_cols=23 Identities=39% Similarity=0.177 Sum_probs=14.2
Q ss_pred cCCCEEEEccCCCChhHHHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~ 186 (779)
+++.+++.||+|+|||.+....+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHH
Confidence 35678999999999996654333
No 269
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.72 E-value=0.014 Score=54.54 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCChhHH
Q psy17912 165 GCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 165 g~dvii~apTGsGKTl~ 181 (779)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999954
No 270
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.71 E-value=0.018 Score=63.32 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=80.3
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhh
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQ 244 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~ 244 (779)
++.+.++||||.|||.+..-.+....... .+...+||..-|--.+. ++.++.+++-+++.+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~-----~~~kVaiITtDtYRIGA--~EQLk~Ya~im~vp~------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLK-----KKKKVAIITTDTYRIGA--VEQLKTYADIMGVPL------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhc-----cCcceEEEEeccchhhH--HHHHHHHHHHhCCce------------
Confidence 67899999999999988554444333111 12335666666544332 234555554445544
Q ss_pred HHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcC-CchHHHHHHHhhcCCCCceEEeecccc-HHHHH
Q psy17912 245 VKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWP-KEVQK 322 (779)
Q Consensus 245 ~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~-~~v~~ 322 (779)
.++-+|.-|...+.. +.++++|.||=+-+-.-. .....+..++....+.--.+.+|||.. .++.+
T Consensus 264 ---------~vv~~~~el~~ai~~----l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlke 330 (407)
T COG1419 264 ---------EVVYSPKELAEAIEA----LRDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKE 330 (407)
T ss_pred ---------EEecCHHHHHHHHHH----hhcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHH
Confidence 345567666666643 777899999988753322 133455555555545556788899974 45566
Q ss_pred HHHHhcc
Q psy17912 323 LAEDFLV 329 (779)
Q Consensus 323 l~~~~l~ 329 (779)
.+..|..
T Consensus 331 i~~~f~~ 337 (407)
T COG1419 331 IIKQFSL 337 (407)
T ss_pred HHHHhcc
Confidence 6666643
No 271
>KOG0345|consensus
Probab=96.66 E-value=0.043 Score=60.49 Aligned_cols=220 Identities=15% Similarity=0.143 Sum_probs=112.1
Q ss_pred cEEEEecchhHHHHHHHHHHh-----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccc--cccc
Q psy17912 377 KTIIFVETKRKADDITRSVRN-----KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLN--EFRI 449 (779)
Q Consensus 377 kvLVF~~s~~~ae~L~~~L~~-----~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~--~~~~ 449 (779)
-.||..||++.|.++.+.+.. .++.+..+-||.+. ++-++.|++....|||+|+ +|-.|+-.-. .+..
T Consensus 81 galIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v---~~Di~~fkee~~nIlVgTP--GRL~di~~~~~~~l~~ 155 (567)
T KOG0345|consen 81 GALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSV---EEDIKTFKEEGPNILVGTP--GRLLDILQREAEKLSF 155 (567)
T ss_pred eEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccH---HHHHHHHHHhCCcEEEeCc--hhHHHHHhchhhhccc
Confidence 479999999998887776543 36778889999665 4456778878889999998 5544422110 0111
Q ss_pred ccceeEEEE-------cCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccccceeeccccccHHHHHHhh
Q psy17912 450 GRASILVSQ-------YKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVL 522 (779)
Q Consensus 450 ~~~~~~VI~-------y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l 522 (779)
+.-..+|++ .+.-.++...+-..=+=-|+|.. --.-..+-.++..-.-.+...+.+....+.. .-..+-
T Consensus 156 rsLe~LVLDEADrLldmgFe~~~n~ILs~LPKQRRTGLF---SATq~~~v~dL~raGLRNpv~V~V~~k~~~~-tPS~L~ 231 (567)
T KOG0345|consen 156 RSLEILVLDEADRLLDMGFEASVNTILSFLPKQRRTGLF---SATQTQEVEDLARAGLRNPVRVSVKEKSKSA-TPSSLA 231 (567)
T ss_pred cccceEEecchHhHhcccHHHHHHHHHHhcccccccccc---cchhhHHHHHHHHhhccCceeeeeccccccc-Cchhhc
Confidence 122234333 12222233333222222333321 1111112222222221221222222111111 111222
Q ss_pred hhhcccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhh
Q psy17912 523 NEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 602 (779)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (779)
++|..+.+. .--.+-=.+|.+....... +|-.|=.+.+=.-.+|-.. .+-..|+..||.-+|.+|+.+|.+
T Consensus 232 ~~Y~v~~a~-------eK~~~lv~~L~~~~~kK~i-VFF~TCasVeYf~~~~~~~-l~~~~i~~iHGK~~q~~R~k~~~~ 302 (567)
T KOG0345|consen 232 LEYLVCEAD-------EKLSQLVHLLNNNKDKKCI-VFFPTCASVEYFGKLFSRL-LKKREIFSIHGKMSQKARAKVLEA 302 (567)
T ss_pred ceeeEecHH-------HHHHHHHHHHhccccccEE-EEecCcchHHHHHHHHHHH-hCCCcEEEecchhcchhHHHHHHH
Confidence 333333331 1111222356666666644 4446655555444444433 334444555999999999999999
Q ss_pred hhcCCceeEEec
Q psy17912 603 FRIGRASILVSH 614 (779)
Q Consensus 603 ~~~~~~~~~~~~ 614 (779)
|+.-+...|.++
T Consensus 303 F~~~~~~vl~~T 314 (567)
T KOG0345|consen 303 FRKLSNGVLFCT 314 (567)
T ss_pred HHhccCceEEee
Confidence 999777777664
No 272
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.65 E-value=0.018 Score=63.43 Aligned_cols=129 Identities=22% Similarity=0.281 Sum_probs=71.0
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEcc--CHH-HHHHHHHHHHHhcccCCceEEEEeCCCCCh
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAP--TRE-LAQQIETVANDFGSATATRVACVFGGAPKG 242 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~P--tr~-La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~ 242 (779)
+.++++||||+|||......+.. +.. .+.++.++.. .|. .+.| ++.++...++.+
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~-L~~-------~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv---------- 299 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQ-FHG-------KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEV---------- 299 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHH-HHH-------cCCcEEEEecCCcchHHHHH----HHHHhhhcCCcE----------
Confidence 46889999999999776554443 222 1334444433 332 2333 233333233332
Q ss_pred hhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC-chHHHHHHHhhcCCCCceEEeecccc-HHH
Q psy17912 243 PQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG-FEPQIRKIIGQIRPDRQVLMWSATWP-KEV 320 (779)
Q Consensus 243 ~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~-f~~~l~~il~~l~~~~qilllSAT~~-~~v 320 (779)
++..+|..+.+.+..-. ...++++|+||-+=+..... ....+..++....++.-++.+|||.. .++
T Consensus 300 -----------~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~ 367 (436)
T PRK11889 300 -----------IAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDM 367 (436)
T ss_pred -----------EecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHH
Confidence 22346666666553311 11257899999997654321 23344555555556666777999764 566
Q ss_pred HHHHHHhc
Q psy17912 321 QKLAEDFL 328 (779)
Q Consensus 321 ~~l~~~~l 328 (779)
...+..|-
T Consensus 368 ~~i~~~F~ 375 (436)
T PRK11889 368 IEIITNFK 375 (436)
T ss_pred HHHHHHhc
Confidence 67776664
No 273
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=96.62 E-value=0.043 Score=66.96 Aligned_cols=58 Identities=12% Similarity=0.055 Sum_probs=51.0
Q ss_pred cceEEEEecccchhhHHHHHHhh---cCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNE---FRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
...+|+|+++.+.++.+...|++ .++..+.+ ||+.+++||+.++..|+.|+..|+||.
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~L---hg~l~~~eq~~~~~~~~~G~rkVlvAT 272 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPL---YGALSLAEQQKAILPAPAGRRKVVLAT 272 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEe---eCCCCHHHHHHHhccccCCCeEEEEec
Confidence 45699999999999999999997 45555555 999999999999999999999999874
No 274
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.60 E-value=0.0039 Score=69.22 Aligned_cols=60 Identities=27% Similarity=0.347 Sum_probs=44.6
Q ss_pred CCCHHHHHHHHHH------hcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHH
Q psy17912 150 APTAIQAQGWPIA------LSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQI 217 (779)
Q Consensus 150 ~p~~~Q~~~i~~i------l~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~ 217 (779)
++++-|++++..+ ..+.++++.|+-|+||| |++-.+...... .+..+++++||-.-|..+
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs--~l~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKS--FLIKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChh--HHHHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 3677899998888 67889999999999999 555444444332 355799999997766644
No 275
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=96.60 E-value=0.088 Score=64.24 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=50.4
Q ss_pred cceEEEEecccchhhHHHHHHhh---cCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNE---FRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
...+|+|+++.+.++.+...|++ .++..+.+ ||+.+|+||+.+++.|+.|+..|+||-
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pL---Hg~L~~~eq~~~~~~~~~G~rkVlVAT 269 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLDSDVLICPL---YGELSLAAQDRAIKPDPQGRRKVVLAT 269 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEe---cCCCCHHHHHHHHhhcccCCeEEEEec
Confidence 35699999999999999999987 35555555 999999999999999999999999874
No 276
>PRK06526 transposase; Provisional
Probab=96.56 E-value=0.0048 Score=64.77 Aligned_cols=27 Identities=22% Similarity=0.223 Sum_probs=20.8
Q ss_pred HHHhcCCCEEEEccCCCChhHHHHHHH
Q psy17912 160 PIALSGCDLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 160 ~~il~g~dvii~apTGsGKTl~~~lp~ 186 (779)
..+..+.+++++||+|+|||......+
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~al~ 119 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIGLG 119 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHHHH
Confidence 345577899999999999996654433
No 277
>PRK14974 cell division protein FtsY; Provisional
Probab=96.55 E-value=0.016 Score=63.24 Aligned_cols=131 Identities=22% Similarity=0.278 Sum_probs=75.2
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccC---HHHHHHHHHHHHHhcccCCceEEEEeCCCCCh
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPT---RELAQQIETVANDFGSATATRVACVFGGAPKG 242 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Pt---r~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~ 242 (779)
.-++++|++|+|||.+....+. .+.. .+.+++++... .....|+...... .++.+.....+.
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~-~l~~-------~g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~--- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAY-YLKK-------NGFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGA--- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHH-HHHH-------cCCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCC---
Confidence 4588999999999976443332 2332 13355555432 2333444333333 355443211111
Q ss_pred hhHHHhhcCCeEEEeChHH-HHHHHHcCCcCCCCeeEEEEccchhhhc-CCchHHHHHHHhhcCCCCceEEeeccccHHH
Q psy17912 243 PQVKALQTGAEIVIATPGR-LIDYLEQGTINLHRTSYLVLDEADRMLD-MGFEPQIRKIIGQIRPDRQVLMWSATWPKEV 320 (779)
Q Consensus 243 ~~~~~l~~~~~IiV~Tpe~-Ll~~l~~~~~~l~~i~~lViDEaH~l~~-~~f~~~l~~il~~l~~~~qilllSAT~~~~v 320 (779)
.|.. +.+.+... .....++|+||.|.++.. ..+...+..+.....|+..++.++||...+.
T Consensus 206 ---------------dp~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~ 268 (336)
T PRK14974 206 ---------------DPAAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDA 268 (336)
T ss_pred ---------------CHHHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhH
Confidence 1111 11222111 123567999999998753 3356677788777888888999999987776
Q ss_pred HHHHHHhc
Q psy17912 321 QKLAEDFL 328 (779)
Q Consensus 321 ~~l~~~~l 328 (779)
...+..|.
T Consensus 269 ~~~a~~f~ 276 (336)
T PRK14974 269 VEQAREFN 276 (336)
T ss_pred HHHHHHHH
Confidence 66666654
No 278
>PF13966 zf-RVT: zinc-binding in reverse transcriptase
Probab=96.51 E-value=0.0011 Score=57.47 Aligned_cols=40 Identities=33% Similarity=0.709 Sum_probs=34.0
Q ss_pred ccccc--cccccccCCCCCCCCC-CCCcchhhhHhhhcCCCcc
Q psy17912 714 KFGKC--AANLHKWGLKSSAACD-CGAEKQTILHIIQDCPRRR 753 (779)
Q Consensus 714 g~~~~--~~~~~~~~~~~~~~c~-cg~~~~t~~h~~~~c~~~~ 753 (779)
-|+++ +++|+++|+..++.|. |+.+.||++|++++||.-.
T Consensus 41 ~~~rL~t~~~l~~r~~~~~~~C~~C~~~~Et~~Hlf~~C~~a~ 83 (86)
T PF13966_consen 41 LHNRLPTKDNLQRRGIQVDPICPLCGNEEETIEHLFFHCPFAR 83 (86)
T ss_pred ccccchhhhhhhccCCccCCccccCCCccccccceeccCcCcc
Confidence 34554 7899999999999995 9988999999999999753
No 279
>KOG0346|consensus
Probab=96.50 E-value=0.044 Score=59.86 Aligned_cols=206 Identities=16% Similarity=0.199 Sum_probs=118.0
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccccccccC
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK------GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY-----NKSQQERDR 442 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~------g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~-----v~~~GIDip 442 (779)
.+...+|.+||++-|.+++..+.+. .+.+.-+.++|+......++ .+.-.|+|+|+ .++.|+..+
T Consensus 92 ~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L----~d~pdIvV~TP~~ll~~~~~~~~~~ 167 (569)
T KOG0346|consen 92 QGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVAL----MDLPDIVVATPAKLLRHLAAGVLEY 167 (569)
T ss_pred ccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHH----ccCCCeEEeChHHHHHHHhhccchh
Confidence 4567899999999999999988763 35566677788776555444 37889999997 344454211
Q ss_pred cccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccc-cceeecc-ccccHHHHHH
Q psy17912 443 VLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGR-ASILVSH-YNKSQQERDR 520 (779)
Q Consensus 443 ~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~-~~il~~~-~~~~~~~~~~ 520 (779)
......+|++- .++ .+.+..++.+..+....... ...+.|- .+...+.-+.
T Consensus 168 ------~~~l~~LVvDE------ADL---------------llsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKk 220 (569)
T KOG0346|consen 168 ------LDSLSFLVVDE------ADL---------------LLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKK 220 (569)
T ss_pred ------hhheeeEEech------hhh---------------hhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHH
Confidence 11122344431 000 11111122222222211111 1111111 1111111111
Q ss_pred hhhhhcccccch-----------hhhcccccHHHHHH-----HHHHhhhc-ceEEEEecccchhhHHHHHHhhcCcccee
Q psy17912 521 VLNEFRIGRASI-----------LVSHYNKSQQERDR-----VLNEFRIG-RASILVSHYNKSQQERDRVLNEFRIGRAS 583 (779)
Q Consensus 521 ~l~~~~~~~~~~-----------~~~~~~~~~~~~~~-----~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (779)
+. ..+..-+ .+.+|-..-.+.|+ +|-.-+.. .++|||.||-..|=-+.=+|++||++..-
T Consensus 221 L~---l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksci 297 (569)
T KOG0346|consen 221 LF---LHNPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCI 297 (569)
T ss_pred Hh---ccCCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhh
Confidence 11 1111100 01111111114455 23333333 37999999999999999999999999987
Q ss_pred EeeeccchhhhhHhhHhhhhhcCCceeEEeccc
Q psy17912 584 ILVSHYNKSQQERDRVLNEFRIGRASILVSHYN 616 (779)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (779)
+ .|.-.++-|--++++|-.|---|++..-.
T Consensus 298 L---NseLP~NSR~Hii~QFNkG~YdivIAtD~ 327 (569)
T KOG0346|consen 298 L---NSELPANSRCHIIEQFNKGLYDIVIATDD 327 (569)
T ss_pred h---cccccccchhhHHHHhhCcceeEEEEccC
Confidence 7 89999999999999999999999987653
No 280
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.35 E-value=0.048 Score=56.88 Aligned_cols=49 Identities=22% Similarity=0.309 Sum_probs=29.7
Q ss_pred CCCeeEEEEccchhhhcCCchHH-HHHHHhh-cCCCCceEEeeccccHHHH
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQ-IRKIIGQ-IRPDRQVLMWSATWPKEVQ 321 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~-l~~il~~-l~~~~qilllSAT~~~~v~ 321 (779)
+.++++|||||++......|... +..|+.. ......+++.|---+.++.
T Consensus 160 l~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred hccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 45688999999997665545543 3334443 2335667766665554443
No 281
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.34 E-value=0.0067 Score=61.16 Aligned_cols=131 Identities=20% Similarity=0.199 Sum_probs=70.8
Q ss_pred CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEcc-CHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH
Q psy17912 167 DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAP-TRELAQQIETVANDFGSATATRVACVFGGAPKGPQV 245 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~P-tr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~ 245 (779)
.++++||||+|||.+..-.+...... . ...++|-+- .|.=|. +.++.+++..++.+.......
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~------~~v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~~------ 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-G------KKVALISADTYRIGAV---EQLKTYAEILGVPFYVARTES------ 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--------EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTTS------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-c------ccceeecCCCCCccHH---HHHHHHHHHhccccchhhcch------
Confidence 47899999999998765544433332 1 113333333 333333 334444444465543322111
Q ss_pred HHhhcCCeEEEeChHHHH-HHHHcCCcCCCCeeEEEEccchhhhcC-CchHHHHHHHhhcCCCCceEEeeccccHHHHHH
Q psy17912 246 KALQTGAEIVIATPGRLI-DYLEQGTINLHRTSYLVLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKL 323 (779)
Q Consensus 246 ~~l~~~~~IiV~Tpe~Ll-~~l~~~~~~l~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l 323 (779)
.|..++ +.+.. ...+++++|+||-+-+.... .....+..++....+..-.+.+|||...+....
T Consensus 67 ------------~~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~ 132 (196)
T PF00448_consen 67 ------------DPAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQ 132 (196)
T ss_dssp ------------CHHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHH
T ss_pred ------------hhHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHH
Confidence 121111 22221 11345789999998754322 234567777777777778899999987665444
Q ss_pred HHHh
Q psy17912 324 AEDF 327 (779)
Q Consensus 324 ~~~~ 327 (779)
+..+
T Consensus 133 ~~~~ 136 (196)
T PF00448_consen 133 ALAF 136 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 282
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=96.30 E-value=0.0092 Score=62.02 Aligned_cols=87 Identities=30% Similarity=0.397 Sum_probs=67.3
Q ss_pred CCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCC-CChhhHHHhhc-CCeEEEeChHHHHHHHHcCCcCCCCe
Q psy17912 199 GEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGA-PKGPQVKALQT-GAEIVIATPGRLIDYLEQGTINLHRT 276 (779)
Q Consensus 199 ~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~-~~~~~~~~l~~-~~~IiV~Tpe~Ll~~l~~~~~~l~~i 276 (779)
...|.+|||+..-.-|.++...++.+.. -+..++-++.-. ...++...+.. ..+|.|+||++|..++..+.+.++.+
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 4578999999998888888888887731 123444444444 44566666664 68999999999999999999999999
Q ss_pred eEEEEccchh
Q psy17912 277 SYLVLDEADR 286 (779)
Q Consensus 277 ~~lViDEaH~ 286 (779)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999997663
No 283
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.27 E-value=0.01 Score=63.90 Aligned_cols=123 Identities=19% Similarity=0.086 Sum_probs=73.8
Q ss_pred CCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCc
Q psy17912 151 PTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATAT 230 (779)
Q Consensus 151 p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l 230 (779)
+++-|.+++.. ...+++|.|..|||||.+.+.-++..+.... ....++|++++|+..|..+.+.+.........
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~----~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~ 74 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG----VPPERILVLTFTNAAAQEMRERIRELLEEEQQ 74 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS----STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhcccc----CChHHheecccCHHHHHHHHHHHHHhcCcccc
Confidence 47789998887 6678999999999999877666655554431 12346999999999999998888775433211
Q ss_pred eEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCC--CeeEEEEccch
Q psy17912 231 RVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLH--RTSYLVLDEAD 285 (779)
Q Consensus 231 ~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~--~i~~lViDEaH 285 (779)
.. ............-..+.|.|...+...+-....... .-.+-++|+..
T Consensus 75 ~~------~~~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ES------SDNERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CC------TT-HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cc------cccccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 00 000011111222357889998887664433211111 12355667666
No 284
>KOG0337|consensus
Probab=96.24 E-value=0.31 Score=53.34 Aligned_cols=204 Identities=18% Similarity=0.186 Sum_probs=118.3
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCC----CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec--cccccc----ccCc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKG----WAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY--NKSQQE----RDRV 443 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g----~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~--v~~~GI----Dip~ 443 (779)
.+-+++|..+|++.+.+..+.++..| ..+.++.|+-+.+++-..+. +.-+|++||+ ....++ ++..
T Consensus 89 ~g~RalilsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~----~npDii~ATpgr~~h~~vem~l~l~s 164 (529)
T KOG0337|consen 89 TGLRALILSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLN----ENPDIIIATPGRLLHLGVEMTLTLSS 164 (529)
T ss_pred cccceeeccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhc----cCCCEEEecCceeeeeehheeccccc
Confidence 45689999999999999888888763 45565666655555555443 5789999997 222222 3333
Q ss_pred ccccccccceeEEEEcCCCCCHHHH-HHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeeccccccH--HHHH
Q psy17912 444 LNEFRIGRASILVSQYKESQQKRDR-VLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQ--QERD 519 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y~~p~s~~~y-iQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~--~~~~ 519 (779)
|. +|+ ||....+-.. .| |. -..+.....++...++|-.-+.. ..+.
T Consensus 165 ve---------yVV-fdEadrlfemgfq--------------------eql~e~l~rl~~~~QTllfSatlp~~lv~fak 214 (529)
T KOG0337|consen 165 VE---------YVV-FDEADRLFEMGFQ--------------------EQLHEILSRLPESRQTLLFSATLPRDLVDFAK 214 (529)
T ss_pred ee---------eee-ehhhhHHHhhhhH--------------------HHHHHHHHhCCCcceEEEEeccCchhhHHHHH
Confidence 32 333 2221111111 00 11 11222222222222222111111 0111
Q ss_pred Hhhhhhcccc--------cchhhhcccccHHHHHHHHHHhhhcc----eEEEEecccchhhHHHHHHhhcCccceeEeee
Q psy17912 520 RVLNEFRIGR--------ASILVSHYNKSQQERDRVLNEFRIGR----ASILVSHYNKSQQERDRVLNEFRIGRASILVS 587 (779)
Q Consensus 520 ~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (779)
.=+.+..+-+ ..+.+..+-...+++...|.....+. .-++|+.|+..+.=+...|+.+|+.-.-|
T Consensus 215 aGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~i--- 291 (529)
T KOG0337|consen 215 AGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDI--- 291 (529)
T ss_pred ccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCcccc---
Confidence 1111111111 00112222233456666666655554 47999999999999999999999999999
Q ss_pred ccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 588 HYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
-|.-.|.-|..=++.|+.|+-.|+|+.
T Consensus 292 ysslD~~aRk~~~~~F~~~k~~~lvvT 318 (529)
T KOG0337|consen 292 YSSLDQEARKINGRDFRGRKTSILVVT 318 (529)
T ss_pred ccccChHhhhhccccccCCccceEEEe
Confidence 888889999999999999999999874
No 285
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=96.20 E-value=0.1 Score=62.69 Aligned_cols=326 Identities=16% Similarity=0.161 Sum_probs=172.6
Q ss_pred hHHHHHHHHHhccCC------CCcEEEEecchhHHHHHHHHH----HhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q psy17912 360 DYKLQGLLSQIGSER------TSKTIIFVETKRKADDITRSV----RNKGWAAVAIHGNKSQQERDRVLNEFRIGRASIL 429 (779)
Q Consensus 360 ~~~L~~ll~~i~~~~------~~kvLVF~~s~~~ae~L~~~L----~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~IL 429 (779)
...+..++..+.... +-.+|-..|-+.-...+...| ...|+++..=||++++.+|.+..+ .--.||
T Consensus 52 eAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~----~PPdIL 127 (814)
T COG1201 52 EAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLK----NPPHIL 127 (814)
T ss_pred HHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccC----CCCcEE
Confidence 445555555554431 123455556666665555555 457999999999999999988665 467899
Q ss_pred EEec-ccccccccCcccccccccceeEEEE-----------cCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHH
Q psy17912 430 VSQY-NKSQQERDRVLNEFRIGRASILVSQ-----------YKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLN 497 (779)
Q Consensus 430 VAT~-v~~~GIDip~v~~~~~~~~~~~VI~-----------y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~ 497 (779)
|+|+ .+.--+.-+..+ =.+...-.+||+ +....+++.+..-+|+.=|-| ..-+..+++. +.
T Consensus 128 iTTPEsL~lll~~~~~r-~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIG---LSATV~~~~~---va 200 (814)
T COG1201 128 ITTPESLAILLNSPKFR-ELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIG---LSATVGPPEE---VA 200 (814)
T ss_pred EeChhHHHHHhcCHHHH-HHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEe---ehhccCCHHH---HH
Confidence 9997 222222211111 011111123333 122334555555555333333 2222222222 22
Q ss_pred hhhccc---cceeeccccccHHHHHHhhhhhcccccchhhhcccccHH-HHHHHHHHhhhcceEEEEecccchhhHHHHH
Q psy17912 498 EFRIGR---ASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQ-ERDRVLNEFRIGRASILVSHYNKSQQERDRV 573 (779)
Q Consensus 498 e~~~~~---~~il~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 573 (779)
+|-.+. ..|+-....+..+. .+-.........+..+. -.+++.+..+.-++.++|+||-.+...+..-
T Consensus 201 rfL~g~~~~~~Iv~~~~~k~~~i--------~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~ 272 (814)
T COG1201 201 KFLVGFGDPCEIVDVSAAKKLEI--------KVISPVEDLIYDEELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFR 272 (814)
T ss_pred HHhcCCCCceEEEEcccCCcceE--------EEEecCCccccccchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHH
Confidence 332322 13333322222210 11111111111122222 4445666666667899999999999999999
Q ss_pred HhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEe-----------------ccccchhHHhhhhhhhcccceeE
Q psy17912 574 LNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS-----------------HYNKSQQERDRVLNEFRIGRASI 636 (779)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~ 636 (779)
|++-+- .-|.+-||.-|-.+|-.|=++||.|....+|+ ||+...|- .|. -+|||||-=
T Consensus 273 L~~~~~--~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV-~r~--lQRiGRsgH 347 (814)
T COG1201 273 LKKLGP--DIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSV-NRF--LQRIGRAGH 347 (814)
T ss_pred HHHhcC--CceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHH-HHH--hHhcccccc
Confidence 998773 44556699999999999999999999877765 66654332 222 357777631
Q ss_pred Eeec---cccchhHHhhhhh---------cceeecceecccchhhHHH------HHHHHHHhhhhhcccCCCCcCCCCCC
Q psy17912 637 LVSH---YNKSQQERDRVLN---------EFRIGRASILVSDFDILRQ------WRIAWDEAAVAEAQHLPCIETQPPGF 698 (779)
Q Consensus 637 ~~~~---~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~------w~~~W~~~~~~~~~~~~~~~~~~~~~ 698 (779)
=+-+ +---.-.||.++. +=+|-..+++.+..+.+.. =...|+-.. .++++ -..-|+.
T Consensus 348 r~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~--~y~~v---rraypy~ 422 (814)
T COG1201 348 RLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEE--AYRVV---RRAYPYA 422 (814)
T ss_pred ccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHH--HHHHH---Hhccccc
Confidence 1111 0000111333321 2233344555555554432 111232222 34443 3345778
Q ss_pred CCChhhHHHhhhhhcc
Q psy17912 699 ELTRRLWVTLNRIRTK 714 (779)
Q Consensus 699 ~~~~~~~~~l~~lrtg 714 (779)
+|+|.......+...+
T Consensus 423 ~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 423 DLSREDFRLVLRYLAG 438 (814)
T ss_pred cCCHHHHHHHHHHHhh
Confidence 8999998888777777
No 286
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.15 E-value=0.024 Score=61.76 Aligned_cols=48 Identities=13% Similarity=0.226 Sum_probs=27.1
Q ss_pred CCCeeEEEEccchhhhcCCc-hHHHHHHHhhc-CCCCceEEeeccccHHH
Q psy17912 273 LHRTSYLVLDEADRMLDMGF-EPQIRKIIGQI-RPDRQVLMWSATWPKEV 320 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f-~~~l~~il~~l-~~~~qilllSAT~~~~v 320 (779)
+.++++||||+.+......| ...+..++... ....++|+.|---|.++
T Consensus 244 l~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 244 LINCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEEL 293 (329)
T ss_pred hccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHH
Confidence 45688999999986544333 23444555443 23445555554444444
No 287
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.15 E-value=0.0085 Score=55.40 Aligned_cols=18 Identities=33% Similarity=0.386 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
+..+++.||+|+|||...
T Consensus 2 ~~~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 2 GEVILIVGPPGSGKTTLA 19 (148)
T ss_pred CCEEEEECCCCCcHHHHH
Confidence 467899999999999554
No 288
>PRK05642 DNA replication initiation factor; Validated
Probab=96.14 E-value=0.016 Score=60.15 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=30.2
Q ss_pred CCCeeEEEEccchhhhcC-CchHHHHHHHhhcCCCCceEEeeccccH
Q psy17912 273 LHRTSYLVLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWPK 318 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~~ 318 (779)
+.++++||||++|.+... .+...+..++..+......+++|++.++
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 335679999999977543 3455677777666554455667777554
No 289
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.07 E-value=0.053 Score=61.30 Aligned_cols=128 Identities=23% Similarity=0.220 Sum_probs=67.8
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHH-hccCCCCCCCCCEEEEE-ccC-HHHHHHHHHHHHHhcccCCceEEEEeCCCCC
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHV-NSQRPLRSGEGPIVLVL-APT-RELAQQIETVANDFGSATATRVACVFGGAPK 241 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l-~~~~~~~~~~~~~vLil-~Pt-r~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~ 241 (779)
++.+++++|||+|||.+....+.... .. .+.++.++ +-+ +.-+. +.+..++...++.+.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~-------~g~~V~li~~D~~r~~a~---eqL~~~a~~~~vp~~-------- 282 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLY-------GKKKVALITLDTYRIGAV---EQLKTYAKIMGIPVE-------- 282 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCccHHHHH---HHHHHHHHHhCCceE--------
Confidence 56789999999999977654443332 12 12244443 322 32222 233333332343321
Q ss_pred hhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcC-CchHHHHHHHhh-cCCCCceEEeeccccH-
Q psy17912 242 GPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDM-GFEPQIRKIIGQ-IRPDRQVLMWSATWPK- 318 (779)
Q Consensus 242 ~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~-~f~~~l~~il~~-l~~~~qilllSAT~~~- 318 (779)
.+.++..+...+.. +..+++||||.+-+.... .....+..++.. ..+....+++|||...
T Consensus 283 -------------~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 283 -------------VVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred -------------ccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 22345555555543 446899999998653321 122345555552 2234557889998764
Q ss_pred HHHHHHHHh
Q psy17912 319 EVQKLAEDF 327 (779)
Q Consensus 319 ~v~~l~~~~ 327 (779)
.+......|
T Consensus 346 ~l~~~~~~f 354 (424)
T PRK05703 346 DLKDIYKHF 354 (424)
T ss_pred HHHHHHHHh
Confidence 455555555
No 290
>KOG0348|consensus
Probab=96.06 E-value=0.074 Score=59.54 Aligned_cols=74 Identities=18% Similarity=0.189 Sum_probs=49.9
Q ss_pred hHHHHHHHHHhccC-------CCCcEEEEecchhHHHHHHHHHHhCCC------eEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy17912 360 DYKLQGLLSQIGSE-------RTSKTIIFVETKRKADDITRSVRNKGW------AAVAIHGNKSQQERDRVLNEFRIGRA 426 (779)
Q Consensus 360 ~~~L~~ll~~i~~~-------~~~kvLVF~~s~~~ae~L~~~L~~~g~------~v~~ihg~~~~~eR~~il~~F~~G~~ 426 (779)
..++.-++..+... .+.=.||.+||++.|.++++.+.+.-. ++..+-|.....|+.++-+ .+
T Consensus 189 LAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRK-----Gi 263 (708)
T KOG0348|consen 189 LAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRK-----GI 263 (708)
T ss_pred HHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhc-----Cc
Confidence 44555555554322 344589999999999999999887522 2334445555556555433 69
Q ss_pred cEEEEecccccccc
Q psy17912 427 SILVSQYNKSQQER 440 (779)
Q Consensus 427 ~ILVAT~v~~~GID 440 (779)
.|||+|+ +|-+|
T Consensus 264 NILIgTP--GRLvD 275 (708)
T KOG0348|consen 264 NILIGTP--GRLVD 275 (708)
T ss_pred eEEEcCc--hHHHH
Confidence 9999999 88886
No 291
>KOG0989|consensus
Probab=96.00 E-value=0.032 Score=58.64 Aligned_cols=44 Identities=14% Similarity=0.254 Sum_probs=31.2
Q ss_pred CCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccc
Q psy17912 272 NLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 272 ~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~ 316 (779)
..+.+..||+||||.|.... ...+.+.+........+++.+.-+
T Consensus 126 ~~~~fKiiIlDEcdsmtsda-q~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 126 PCPPFKIIILDECDSMTSDA-QAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred CCCcceEEEEechhhhhHHH-HHHHHHHHhccccceEEEEEcCCh
Confidence 46677999999999887553 336667777766666777766653
No 292
>PRK06893 DNA replication initiation factor; Validated
Probab=96.00 E-value=0.018 Score=59.67 Aligned_cols=47 Identities=19% Similarity=0.367 Sum_probs=30.6
Q ss_pred CCCeeEEEEccchhhhcC-CchHHHHHHHhhcCC-CCceEEeeccccHH
Q psy17912 273 LHRTSYLVLDEADRMLDM-GFEPQIRKIIGQIRP-DRQVLMWSATWPKE 319 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~-~~qilllSAT~~~~ 319 (779)
+.+.++|||||+|.+... .+...+..++..... ..+++++|++.++.
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 346789999999987533 244455566655543 44667788876554
No 293
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=95.98 E-value=0.014 Score=68.64 Aligned_cols=67 Identities=16% Similarity=0.161 Sum_probs=51.9
Q ss_pred HHHHHHHHhhh----cceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 543 ERDRVLNEFRI----GRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 543 ~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...+.+..+. +++.||||+|++.++.+...|+..|+|...| ||+.+|.|+..+. |+.++..|+|+-
T Consensus 458 K~~aL~~~i~~~~~~~~pvLIft~t~~~se~L~~~L~~~gi~~~~L---hg~~~~rE~~ii~--~ag~~g~VlVAT 528 (656)
T PRK12898 458 KWAAVAARVRELHAQGRPVLVGTRSVAASERLSALLREAGLPHQVL---NAKQDAEEAAIVA--RAGQRGRITVAT 528 (656)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEe---eCCcHHHHHHHHH--HcCCCCcEEEEc
Confidence 33344444433 8899999999999999999999999999999 9987666666555 555555688875
No 294
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=95.95 E-value=0.069 Score=65.05 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=28.1
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecccc
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWP 317 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~ 317 (779)
.+.+++||||+|+|....+. .+.++++..+....+|+++ |-+
T Consensus 119 ~~~KV~IIDEad~lt~~a~N-aLLK~LEEpP~~~~fIl~t-t~~ 160 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFN-ALLKIVEEPPEHLKFIFAT-TEP 160 (824)
T ss_pred CCceEEEEechhhcCHHHHH-HHHHHHhCCCCCeEEEEEe-CCh
Confidence 56789999999998765333 5666666655555555554 533
No 295
>KOG1001|consensus
Probab=95.94 E-value=0.047 Score=64.76 Aligned_cols=138 Identities=20% Similarity=0.174 Sum_probs=81.3
Q ss_pred CEEEEccCCCChhHHHHHHHHHHHhccC-CCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH
Q psy17912 167 DLVAIAKTGSGKTLGYIAPAIVHVNSQR-PLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQV 245 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~l~~l~~~~-~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~ 245 (779)
-.|+.-..|-|||...+..++.+-...+ ..........||++|+ ++..|+..++.+..+...+.+...+| +..+.
T Consensus 154 ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g---r~kd~ 229 (674)
T KOG1001|consen 154 GGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG---RTKDK 229 (674)
T ss_pred cceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc---ccccc
Confidence 5788889999999776554443322211 0001234457888887 55666777777676666777777776 22222
Q ss_pred HHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccc
Q psy17912 246 KALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 246 ~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~ 316 (779)
.. ..+.+||++||..+.. ..+..-.+-.||+||||.+....- +..+..-.+... ..-.+|+|.
T Consensus 230 ~e-l~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ikn~~t--q~~~a~~~L~a~-~RWcLtgtP 292 (674)
T KOG1001|consen 230 SE-LNSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIKNKDT--QIFKAVCQLDAK-YRWCLTGTP 292 (674)
T ss_pred ch-hcCCceEEeeHHHhhc----ccccceeEEEEEeccccccCCcch--Hhhhhheeeccc-eeeeecCCh
Confidence 22 2347899999977663 222223456799999999887532 222223333222 334467774
No 296
>PRK06921 hypothetical protein; Provisional
Probab=95.94 E-value=0.11 Score=55.08 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=15.3
Q ss_pred cCCCEEEEccCCCChhHH
Q psy17912 164 SGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~ 181 (779)
.+.++++.|++|+|||..
T Consensus 116 ~~~~l~l~G~~G~GKThL 133 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHL 133 (266)
T ss_pred CCCeEEEECCCCCcHHHH
Confidence 357899999999999944
No 297
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.93 E-value=0.024 Score=58.93 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=25.7
Q ss_pred eeEEEEccchhhhcC-CchHHHHHHHhhcCC-CCceEEeeccccH
Q psy17912 276 TSYLVLDEADRMLDM-GFEPQIRKIIGQIRP-DRQVLMWSATWPK 318 (779)
Q Consensus 276 i~~lViDEaH~l~~~-~f~~~l~~il~~l~~-~~qilllSAT~~~ 318 (779)
+++|||||+|.+... .+...+..++..+.. ....+++|++.|+
T Consensus 98 ~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 98 LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 578999999987543 245555566655432 3323555665544
No 298
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=95.87 E-value=0.28 Score=54.31 Aligned_cols=59 Identities=17% Similarity=0.263 Sum_probs=47.1
Q ss_pred HHHHhh--hcceEEEEecccchhhHHHHHHhhcCc--cceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 547 VLNEFR--IGRASILVSHYNKSQQERDRVLNEFRI--GRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 547 ~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+.+.++ .+...|+|++|.+.++++.+.|++.|. +...+ ||+.+|.+|+++ ++..|||+-
T Consensus 263 i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l---~g~~~~~~R~~~------~~~~iLVaT 325 (357)
T TIGR03158 263 VIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRI---TGFAPKKDRERA------MQFDILLGT 325 (357)
T ss_pred HHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEee---ecCCCHHHHHHh------ccCCEEEEe
Confidence 444443 467899999999999999999998764 55666 999999999865 467788875
No 299
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.85 E-value=0.087 Score=50.39 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=23.8
Q ss_pred EEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHH
Q psy17912 168 LVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELA 214 (779)
Q Consensus 168 vii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La 214 (779)
+++.|++|+|||......+..... .+..++++.....+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~--------~~~~v~~~~~e~~~~ 40 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT--------KGGKVVYVDIEEEIE 40 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh--------cCCEEEEEECCcchH
Confidence 688999999999654443333222 244567776654443
No 300
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.84 E-value=0.064 Score=64.09 Aligned_cols=130 Identities=20% Similarity=0.198 Sum_probs=71.5
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEcc-C-HHHHHHHHHHHHHhcccCCceEEEEeCCCCCh
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAP-T-RELAQQIETVANDFGSATATRVACVFGGAPKG 242 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~P-t-r~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~ 242 (779)
++-+.++||||+|||++....+....... .+.++.++.- + +.=+ .+.++.++...++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~------G~kkV~lit~Dt~RigA---~eQL~~~a~~~gvpv---------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVARE------GADQLALLTTDSFRIGA---LEQLRIYGRILGVPV---------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHc------CCCeEEEecCcccchHH---HHHHHHHHHhCCCCc----------
Confidence 44678999999999987655443332221 1124444332 2 2112 233344433334332
Q ss_pred hhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcC-CchHHHHHHHhhcCCCCceEEeecccc-HHH
Q psy17912 243 PQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWP-KEV 320 (779)
Q Consensus 243 ~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~-~~v 320 (779)
.++.+|..+.+.+.. +.+.++|+||=+=+.... .....+..+.....+...++.++||.. ..+
T Consensus 246 -----------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l 310 (767)
T PRK14723 246 -----------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTL 310 (767)
T ss_pred -----------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHH
Confidence 123366666666643 456789999988765422 123344444444556677888999974 445
Q ss_pred HHHHHHhc
Q psy17912 321 QKLAEDFL 328 (779)
Q Consensus 321 ~~l~~~~l 328 (779)
.+.+..|.
T Consensus 311 ~~i~~~f~ 318 (767)
T PRK14723 311 NEVVHAYR 318 (767)
T ss_pred HHHHHHHh
Confidence 55666663
No 301
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=95.78 E-value=0.012 Score=49.52 Aligned_cols=40 Identities=33% Similarity=0.505 Sum_probs=37.9
Q ss_pred HHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 572 RVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
.+|++.||+.+.| ||+.++.+|+.++++|+.|...||++-
T Consensus 1 ~~L~~~~~~~~~i---~~~~~~~~r~~~~~~f~~~~~~vli~t 40 (78)
T PF00271_consen 1 KFLEKKGIKVAII---HGDMSQKERQEILKKFNSGEIRVLIAT 40 (78)
T ss_dssp HHHHHTTSSEEEE---STTSHHHHHHHHHHHHHTTSSSEEEES
T ss_pred CChHHCCCcEEEE---ECCCCHHHHHHHHHHhhccCceEEEee
Confidence 4799999999999 999999999999999999999999985
No 302
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.78 E-value=0.47 Score=56.82 Aligned_cols=59 Identities=22% Similarity=0.179 Sum_probs=45.1
Q ss_pred HHHHh-hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcC-CceeEEe
Q psy17912 547 VLNEF-RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIG-RASILVS 613 (779)
Q Consensus 547 ~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 613 (779)
+++.. ..|...|+||++...++++.+.| +.| .| ||+.+|.||..+|++|+.| +..+||+
T Consensus 488 Li~~he~~g~kiLVF~~~~~~l~~~a~~L---~~~--~I---~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 488 LIRFHEQRGDKIIVFSDNVFALKEYAIKL---GKP--FI---YGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred HHHHHhhcCCeEEEEeCCHHHHHHHHHHc---CCc--eE---ECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 44433 26789999999988777776666 443 47 9999999999999999976 6565554
No 303
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=95.73 E-value=0.02 Score=68.29 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=57.1
Q ss_pred HHHHHHHHHh----hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 542 QERDRVLNEF----RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 542 ~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
++.+.++++. ..|++.|+||+|++.++.+.+.|+..|+|...+ ||+.+|+||.-+...|+.|+ |+|+
T Consensus 408 ~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L---~a~~~~~E~~ii~~ag~~g~--VlIA 478 (762)
T TIGR03714 408 EKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLL---NAQNAAKEAQIIAEAGQKGA--VTVA 478 (762)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEe---cCCChHHHHHHHHHcCCCCe--EEEE
Confidence 3444455544 569999999999999999999999999999999 99999999999999998884 5655
No 304
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.69 E-value=0.096 Score=51.91 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=32.9
Q ss_pred EEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 168 LVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 168 vii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
+++.||+|+|||...+-.+...+.. +..+++++. .+...++.+.+..++
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~--------g~~v~~~s~-e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR--------GEPGLYVTL-EESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC--------CCcEEEEEC-CCCHHHHHHHHHHcC
Confidence 6899999999997665555544432 446777764 455666666666653
No 305
>PRK08727 hypothetical protein; Validated
Probab=95.68 E-value=0.05 Score=56.48 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=26.3
Q ss_pred CCCeeEEEEccchhhhcCC-chHHHHHHHhhcCC-CCceEEeeccccHHH
Q psy17912 273 LHRTSYLVLDEADRMLDMG-FEPQIRKIIGQIRP-DRQVLMWSATWPKEV 320 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~-f~~~l~~il~~l~~-~~qilllSAT~~~~v 320 (779)
+.++++|||||+|.+.... ....+..++..... ..++|+.|...|.+.
T Consensus 91 l~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l 140 (233)
T PRK08727 91 LEGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGL 140 (233)
T ss_pred HhcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhh
Confidence 3456799999999876432 23334444444332 334555444444443
No 306
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=95.64 E-value=0.033 Score=51.32 Aligned_cols=59 Identities=31% Similarity=0.428 Sum_probs=53.9
Q ss_pred hcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 553 IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
.+...|+|+++...++++.+.|.+.+++.+.+ ||+.+.+||..++++|+.|...|+++.
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~f~~~~~~ili~t 85 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGIKVAAL---HGDGSQEEREEVLKDFREGEIVVLVAT 85 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEE---ECCCCHHHHHHHHHHHHcCCCcEEEEc
Confidence 46679999999999999999999988887777 999999999999999999999999875
No 307
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=95.60 E-value=0.076 Score=62.98 Aligned_cols=39 Identities=15% Similarity=0.318 Sum_probs=24.8
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
.+++++||||+|.|....|. .+.++++.-+++..+|+.|
T Consensus 118 gr~KVIIIDEah~LT~~A~N-ALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFN-AMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChhhCCHHHHH-HHHHHHHhcCCCeEEEEEE
Confidence 45789999999998764333 4555555544444444444
No 308
>KOG0383|consensus
Probab=95.56 E-value=0.0045 Score=72.43 Aligned_cols=78 Identities=18% Similarity=0.234 Sum_probs=62.5
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHh---cCCCcEEEEeccc
Q psy17912 359 KDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFR---IGRASILVSQYNK 435 (779)
Q Consensus 359 k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~---~G~~~ILVAT~v~ 435 (779)
|...|...++.+ ...+++|+||.......+.|..++...+ ....+.|..+..+|..++..|. +...-+|.+|.+.
T Consensus 616 k~~~l~~~~~~l-~~~ghrvl~~~q~~~~ldlled~~~~~~-~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~ 693 (696)
T KOG0383|consen 616 KLTLLLKMLKKL-KSSGHRVLIFSQMIHMLDLLEDYLTYEG-KYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAG 693 (696)
T ss_pred HHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHhHHHHhccC-cceeccCCccchhhhhhccccCCCCccceEEEeecccc
Confidence 333444444444 3458999999999999999999999888 8889999999999999999998 3456789999876
Q ss_pred ccc
Q psy17912 436 SQQ 438 (779)
Q Consensus 436 ~~G 438 (779)
+.|
T Consensus 694 g~g 696 (696)
T KOG0383|consen 694 GLG 696 (696)
T ss_pred cCC
Confidence 654
No 309
>PRK08116 hypothetical protein; Validated
Probab=95.53 E-value=0.16 Score=53.96 Aligned_cols=48 Identities=17% Similarity=0.220 Sum_probs=27.8
Q ss_pred CCCeeEEEEccchh--hhcCCchHHHHHHHhh-cCCCCceEEeeccccHHHH
Q psy17912 273 LHRTSYLVLDEADR--MLDMGFEPQIRKIIGQ-IRPDRQVLMWSATWPKEVQ 321 (779)
Q Consensus 273 l~~i~~lViDEaH~--l~~~~f~~~l~~il~~-l~~~~qilllSAT~~~~v~ 321 (779)
+.+.++|||||++. ..++ ....+..++.. .....++|+.|...|.++.
T Consensus 176 l~~~dlLviDDlg~e~~t~~-~~~~l~~iin~r~~~~~~~IiTsN~~~~eL~ 226 (268)
T PRK08116 176 LVNADLLILDDLGAERDTEW-AREKVYNIIDSRYRKGLPTIVTTNLSLEELK 226 (268)
T ss_pred hcCCCEEEEecccCCCCCHH-HHHHHHHHHHHHHHCCCCEEEECCCCHHHHH
Confidence 44678999999964 2222 22334445543 2345667776666665543
No 310
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.51 E-value=0.02 Score=56.86 Aligned_cols=47 Identities=26% Similarity=0.309 Sum_probs=26.7
Q ss_pred HhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHH
Q psy17912 162 ALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQI 217 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~ 217 (779)
+.+++++++.||+|+|||..+...+...+.. +..+++ ++..+|...+
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~ai~~~~~~~--------g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVAIANEAIRK--------GYSVLF-ITASDLLDEL 90 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHHHHHHHHHT--------T--EEE-EEHHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHHHHHHhccC--------CcceeE-eecCceeccc
Confidence 4467899999999999996654433333322 334555 4555666543
No 311
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.51 E-value=0.17 Score=57.99 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=58.3
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCC-hhh
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPK-GPQ 244 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~-~~~ 244 (779)
+..|++||.|+|||.++.+.+........ + +..-|. ....|..+.......+..+.+.... .++
T Consensus 36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~-------~-------~~~pCg-~C~~C~~i~~~~~~Dv~eidaas~~~vdd 100 (491)
T PRK14964 36 QSILLVGASGVGKTTCARIISLCLNCSNG-------P-------TSDPCG-TCHNCISIKNSNHPDVIEIDAASNTSVDD 100 (491)
T ss_pred ceEEEECCCCccHHHHHHHHHHHHcCcCC-------C-------CCCCcc-ccHHHHHHhccCCCCEEEEecccCCCHHH
Confidence 46999999999999876554432222111 1 000010 1123344444445555555443211 122
Q ss_pred HHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccc
Q psy17912 245 VKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 245 ~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~ 316 (779)
.+.+ .+...... ...+..++||||+|.+....|. .+.+.+..-++...+++ .+|-
T Consensus 101 IR~I--------------ie~~~~~P-~~~~~KVvIIDEah~Ls~~A~N-aLLK~LEePp~~v~fIl-atte 155 (491)
T PRK14964 101 IKVI--------------LENSCYLP-ISSKFKVYIIDEVHMLSNSAFN-ALLKTLEEPAPHVKFIL-ATTE 155 (491)
T ss_pred HHHH--------------HHHHHhcc-ccCCceEEEEeChHhCCHHHHH-HHHHHHhCCCCCeEEEE-EeCC
Confidence 2221 12221111 2457889999999987754332 44445554444444444 4453
No 312
>PF13173 AAA_14: AAA domain
Probab=95.46 E-value=0.089 Score=49.01 Aligned_cols=38 Identities=16% Similarity=0.460 Sum_probs=26.3
Q ss_pred CeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecc
Q psy17912 275 RTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSAT 315 (779)
Q Consensus 275 ~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT 315 (779)
.-.+|+|||+|.+.+ +...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~--~~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPD--WEDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhcc--HHHHHHHHHHhc-cCceEEEEccc
Confidence 456899999999865 466777776654 45666655444
No 313
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.42 E-value=0.24 Score=56.85 Aligned_cols=129 Identities=18% Similarity=0.215 Sum_probs=65.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE-cc-CHHHHHHHHHHHHHhcccCCceEEEEeCCCCC
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL-AP-TRELAQQIETVANDFGSATATRVACVFGGAPK 241 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil-~P-tr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~ 241 (779)
.++.++++||||+|||......+....... .+.++.++ .. .+..+. +.++.++...++.+..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~------~gkkVaLIdtDtyRigA~---EQLk~ya~iLgv~v~~------- 412 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQH------APRDVALVTTDTQRVGGR---EQLHSYGRQLGIAVHE------- 412 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCceEEEecccccccHH---HHHHHhhcccCceeEe-------
Confidence 467888999999999977644433322221 11234333 32 333332 2333443333432211
Q ss_pred hhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC-chHHHHHHHhhcCCCCceEEeecccc-HH
Q psy17912 242 GPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG-FEPQIRKIIGQIRPDRQVLMWSATWP-KE 319 (779)
Q Consensus 242 ~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~-f~~~l~~il~~l~~~~qilllSAT~~-~~ 319 (779)
+.++..+...+.. +.+.++||||.+-+..... ....+..+ ........+++++++.. .+
T Consensus 413 --------------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L-~aa~~~a~lLVLpAtss~~D 473 (559)
T PRK12727 413 --------------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWL-RAARQVTSLLVLPANAHFSD 473 (559)
T ss_pred --------------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHH-HHhhcCCcEEEEECCCChhH
Confidence 1234445555543 4568899999997643211 11122222 22234456788888864 34
Q ss_pred HHHHHHHh
Q psy17912 320 VQKLAEDF 327 (779)
Q Consensus 320 v~~l~~~~ 327 (779)
+...++.|
T Consensus 474 l~eii~~f 481 (559)
T PRK12727 474 LDEVVRRF 481 (559)
T ss_pred HHHHHHHH
Confidence 55555554
No 314
>KOG3973|consensus
Probab=95.39 E-value=0.024 Score=59.53 Aligned_cols=7 Identities=57% Similarity=1.028 Sum_probs=2.6
Q ss_pred CCCCCCC
Q psy17912 38 GYGAPRG 44 (779)
Q Consensus 38 G~g~~rG 44 (779)
|+|++||
T Consensus 368 GrGgGRG 374 (465)
T KOG3973|consen 368 GRGGGRG 374 (465)
T ss_pred CCCCCCC
Confidence 3333333
No 315
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.38 E-value=0.027 Score=67.76 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=54.1
Q ss_pred hhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 551 FRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
...+++.||||+|.+.++.+...|...|+|...+ ||+.+|+||.-+...++.| .|+|+-
T Consensus 425 ~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L---~~~~~~~e~~~i~~ag~~g--~VlIAT 483 (790)
T PRK09200 425 HETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLL---NAKNAAKEAQIIAEAGQKG--AVTVAT 483 (790)
T ss_pred HhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEe---cCCccHHHHHHHHHcCCCC--eEEEEc
Confidence 3568999999999999999999999999999999 9999999999999999988 577764
No 316
>KOG1131|consensus
Probab=95.35 E-value=0.09 Score=58.63 Aligned_cols=73 Identities=11% Similarity=-0.040 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHH----hcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHH
Q psy17912 147 GFQAPTAIQAQGWPIA----LSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAN 222 (779)
Q Consensus 147 g~~~p~~~Q~~~i~~i----l~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~ 222 (779)
.|...+|-|.+-+.-+ -.+-+.++.+|+|+|||.+.+-.++..-...+. ..-+.++.+-|..-++....+++
T Consensus 13 PY~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El~ 88 (755)
T KOG1131|consen 13 PYDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEELK 88 (755)
T ss_pred CCcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHHH
Confidence 3455566666555433 345589999999999997766555555444332 12245565555554444444444
Q ss_pred H
Q psy17912 223 D 223 (779)
Q Consensus 223 ~ 223 (779)
.
T Consensus 89 ~ 89 (755)
T KOG1131|consen 89 R 89 (755)
T ss_pred H
Confidence 3
No 317
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.29 E-value=0.1 Score=53.58 Aligned_cols=42 Identities=10% Similarity=0.248 Sum_probs=24.3
Q ss_pred eeEEEEccchhhhcC-CchHHHHHHHhhcCCCCceEEeecccc
Q psy17912 276 TSYLVLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWP 317 (779)
Q Consensus 276 i~~lViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~ 317 (779)
.++|||||+|.+... .+...+..++.........+++|++.+
T Consensus 91 ~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~ 133 (226)
T TIGR03420 91 ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAA 133 (226)
T ss_pred CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCC
Confidence 468999999987643 234455555554432223455566543
No 318
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.27 E-value=0.3 Score=51.73 Aligned_cols=131 Identities=19% Similarity=0.238 Sum_probs=72.2
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEcc-CH--HHHHHHHHHHHHhcccCCceEEEEeCCCC
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAP-TR--ELAQQIETVANDFGSATATRVACVFGGAP 240 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~P-tr--~La~Q~~~~~~~~~~~~~l~v~~~~gg~~ 240 (779)
.+..+++++++|+|||..+..-+... .. .+..+.++.. +. ..+.|+.. ++...++.+.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l-~~-------~~~~v~~i~~D~~ri~~~~ql~~----~~~~~~~~~~------- 134 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF-HG-------KKKTVGFITTDHSRIGTVQQLQD----YVKTIGFEVI------- 134 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH-HH-------cCCeEEEEecCCCCHHHHHHHHH----HhhhcCceEE-------
Confidence 44678999999999997765444332 22 1234444433 22 34444433 3322233321
Q ss_pred ChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcC-CchHHHHHHHhhcCCCCceEEeeccc-cH
Q psy17912 241 KGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATW-PK 318 (779)
Q Consensus 241 ~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~-~~ 318 (779)
...+|..+.+.+..- ....++++||||-+=+.... .....+..++....++.-++.+|||. +.
T Consensus 135 --------------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~ 199 (270)
T PRK06731 135 --------------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK 199 (270)
T ss_pred --------------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH
Confidence 113455554444221 11346899999999765322 12334555555556666677899986 45
Q ss_pred HHHHHHHHhc
Q psy17912 319 EVQKLAEDFL 328 (779)
Q Consensus 319 ~v~~l~~~~l 328 (779)
+....++.|.
T Consensus 200 d~~~~~~~f~ 209 (270)
T PRK06731 200 DMIEIITNFK 209 (270)
T ss_pred HHHHHHHHhC
Confidence 7777777664
No 319
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.25 E-value=0.12 Score=59.16 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=26.3
Q ss_pred CCeeEEEEccchhhhcCC-chHHHHHHHhhcC-CCCceEEeeccccHHHH
Q psy17912 274 HRTSYLVLDEADRMLDMG-FEPQIRKIIGQIR-PDRQVLMWSATWPKEVQ 321 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~-f~~~l~~il~~l~-~~~qilllSAT~~~~v~ 321 (779)
.++++|||||+|.+.... ....+..++..+. ...++++.|...|..+.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 357799999999875432 2233444444432 34455544444444433
No 320
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=95.23 E-value=0.03 Score=67.31 Aligned_cols=65 Identities=11% Similarity=0.119 Sum_probs=58.9
Q ss_pred HHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 544 RDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 544 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
.++|.+....|++.|+||.|....+.+.+.|.+.|||...+ |++.+|+||+-|++.|+.|. |+|+
T Consensus 439 i~ei~~~~~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vL---nak~~~~Ea~ii~~Ag~~G~--VtIA 503 (908)
T PRK13107 439 IKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVL---NAKFHEREAEIVAQAGRTGA--VTIA 503 (908)
T ss_pred HHHHHHHHHcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEec---cCcccHHHHHHHHhCCCCCc--EEEe
Confidence 34466667899999999999999999999999999999988 99999999999999999999 5554
No 321
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.23 E-value=0.17 Score=52.20 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=25.9
Q ss_pred CeeEEEEccchhhhcCCchHHHHHHHhhcCCCCc-eEEeeccccH
Q psy17912 275 RTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ-VLMWSATWPK 318 (779)
Q Consensus 275 ~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~q-illlSAT~~~ 318 (779)
..++|||||+|.+... -...+..++........ +++++++.++
T Consensus 90 ~~~~liiDdi~~l~~~-~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDA-QQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCch-HHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 4568999999986533 23344455544433333 5777777654
No 322
>PRK12377 putative replication protein; Provisional
Probab=95.22 E-value=0.14 Score=53.56 Aligned_cols=47 Identities=26% Similarity=0.227 Sum_probs=26.5
Q ss_pred CCCeeEEEEccchhhhcCCch-HHHHHHHhh-cCCCCceEEeeccccHH
Q psy17912 273 LHRTSYLVLDEADRMLDMGFE-PQIRKIIGQ-IRPDRQVLMWSATWPKE 319 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~-~~l~~il~~-l~~~~qilllSAT~~~~ 319 (779)
+.++++|||||++......+. ..+..++.. .....++++.|---+.+
T Consensus 161 l~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~~ 209 (248)
T PRK12377 161 LCKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHEA 209 (248)
T ss_pred hcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHHH
Confidence 567899999999654333232 233444443 23346677666543333
No 323
>PHA02533 17 large terminase protein; Provisional
Probab=95.16 E-value=0.14 Score=59.55 Aligned_cols=148 Identities=13% Similarity=0.015 Sum_probs=85.0
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 229 (779)
.|.|+|.+.+..+..++-.++..+=..|||.+....++...... .+..+++++|+..-|..+.+.++.+.+...
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 47899999998876666667888889999988765454444332 245899999999999988887776544321
Q ss_pred --ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCC--
Q psy17912 230 --TRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRP-- 305 (779)
Q Consensus 230 --l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~-- 305 (779)
+... +.... ...-.+.++..|.+.|.. .+...=...+++|+||+|.+.+ +...+..+...+..
T Consensus 133 ~l~~~~-i~~~~---~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~--~~e~~~ai~p~lasg~ 199 (534)
T PHA02533 133 DFLQPG-IVEWN---KGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIPN--FIDFWLAIQPVISSGR 199 (534)
T ss_pred HHhhcc-eeecC---ccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCCC--HHHHHHHHHHHHHcCC
Confidence 1110 00000 011112345566555421 1111222467899999997654 22333333333322
Q ss_pred CCceEEeeccc
Q psy17912 306 DRQVLMWSATW 316 (779)
Q Consensus 306 ~~qilllSAT~ 316 (779)
..+++.+|+..
T Consensus 200 ~~r~iiiSTp~ 210 (534)
T PHA02533 200 SSKIIITSTPN 210 (534)
T ss_pred CceEEEEECCC
Confidence 23555556553
No 324
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.12 E-value=0.13 Score=60.22 Aligned_cols=41 Identities=12% Similarity=0.227 Sum_probs=26.1
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeec
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSA 314 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSA 314 (779)
..+++++||||+|.|....+. .+.++++.-+++..+|+.|.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaN-ALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFN-AMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred cCCceEEEEEChHhcCHHHHH-HHHHhhccCCCCceEEEEeC
Confidence 346789999999998765443 45555555444555555543
No 325
>KOG0349|consensus
Probab=95.11 E-value=0.031 Score=60.62 Aligned_cols=65 Identities=34% Similarity=0.486 Sum_probs=59.8
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhc
Q psy17912 128 QHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNS 192 (779)
Q Consensus 128 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~ 192 (779)
..|++++.-|++-.+..++.+.-||.+|.++||.|+.|-|++..|+||||||-+|++|+++-...
T Consensus 2 ~af~e~gv~pel~~a~~e~dw~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqiv~e 66 (725)
T KOG0349|consen 2 TAFEEFGVLPELGMATDELDWTLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQIVWE 66 (725)
T ss_pred cchHhhCcchHhhhhhhhhccccccccccccccEEecCCcEEEEeccCCCCccceehhhHHHHHH
Confidence 45888999999999999999999999999999999999999999999999999999999876543
No 326
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.06 E-value=0.14 Score=65.96 Aligned_cols=62 Identities=24% Similarity=0.250 Sum_probs=45.1
Q ss_pred CCCHHHHHHHHHHhcC--CCEEEEccCCCChhHHH--HHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHH
Q psy17912 150 APTAIQAQGWPIALSG--CDLVAIAKTGSGKTLGY--IAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQI 217 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~--~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~ 217 (779)
.+++-|.+++..++.. +-+++.|..|+|||... ++.++..+.. ..+..++.++||-.-+..+
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHH
Confidence 6899999999999965 67999999999999653 2222222221 2356788999998776654
No 327
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.06 E-value=0.13 Score=55.77 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=25.4
Q ss_pred CeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 275 RTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 275 ~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
..++|||||+|.+........+..++...+.+.++++.|
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 467999999998733334455666666665666665544
No 328
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.03 E-value=0.25 Score=58.72 Aligned_cols=148 Identities=19% Similarity=0.202 Sum_probs=88.9
Q ss_pred HHHHcCCCCCCHHHHHHHHHHhcCC--CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHH
Q psy17912 142 KIYEMGFQAPTAIQAQGWPIALSGC--DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIET 219 (779)
Q Consensus 142 ~l~~~g~~~p~~~Q~~~i~~il~g~--dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~ 219 (779)
.+.....+.+..-|.+.+..++..+ -+++.|.=|=|||.+.-+.+.. +.... ....++|.+|+.+-++...+
T Consensus 206 ~l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~-~~~~~-----~~~~iiVTAP~~~nv~~Lf~ 279 (758)
T COG1444 206 ELYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALAA-AARLA-----GSVRIIVTAPTPANVQTLFE 279 (758)
T ss_pred HHhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHH-HHHhc-----CCceEEEeCCCHHHHHHHHH
Confidence 3444445556666666666666543 5889999999999776655522 22211 03479999999999888877
Q ss_pred HHHHhcccCCceEEEEeCCCCChhhHHHh-hcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHH
Q psy17912 220 VANDFGSATATRVACVFGGAPKGPQVKAL-QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRK 298 (779)
Q Consensus 220 ~~~~~~~~~~l~v~~~~gg~~~~~~~~~l-~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~ 298 (779)
.+.+-...+|++-.+...... ..... .+...|=+-+|.... ..-++||||||=.+. .+.+.+
T Consensus 280 fa~~~l~~lg~~~~v~~d~~g---~~~~~~~~~~~i~y~~P~~a~----------~~~DllvVDEAAaIp----lplL~~ 342 (758)
T COG1444 280 FAGKGLEFLGYKRKVAPDALG---EIREVSGDGFRIEYVPPDDAQ----------EEADLLVVDEAAAIP----LPLLHK 342 (758)
T ss_pred HHHHhHHHhCCcccccccccc---ceeeecCCceeEEeeCcchhc----------ccCCEEEEehhhcCC----hHHHHH
Confidence 776655555544222111100 00001 112346666663211 116799999997655 556666
Q ss_pred HHhhcCCCCceEEeeccc
Q psy17912 299 IIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 299 il~~l~~~~qilllSAT~ 316 (779)
++... +.++||.|+
T Consensus 343 l~~~~----~rv~~sTTI 356 (758)
T COG1444 343 LLRRF----PRVLFSTTI 356 (758)
T ss_pred HHhhc----CceEEEeee
Confidence 66543 578899997
No 329
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.99 E-value=0.16 Score=57.52 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=35.9
Q ss_pred eeEEEEccchhhhc-CCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhc
Q psy17912 276 TSYLVLDEADRMLD-MGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFL 328 (779)
Q Consensus 276 i~~lViDEaH~l~~-~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l 328 (779)
.++||||.+-++.. ......+..+.....++.-++.++||...+....++.|.
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~a~~F~ 229 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQAKAFH 229 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHHHHHHH
Confidence 48999999965432 123445666666667788888899998766656665543
No 330
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=94.96 E-value=0.13 Score=56.27 Aligned_cols=38 Identities=16% Similarity=0.008 Sum_probs=28.3
Q ss_pred CCCHHHHHHHHHHhcCC----CEEEEccCCCChhHHHHHHHH
Q psy17912 150 APTAIQAQGWPIALSGC----DLVAIAKTGSGKTLGYIAPAI 187 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~----dvii~apTGsGKTl~~~lp~l 187 (779)
..+|+|...|..+.... -.+++||.|.|||..+...+-
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~ 44 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAA 44 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHH
Confidence 34788999998877442 488999999999966544333
No 331
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.95 E-value=0.036 Score=58.23 Aligned_cols=54 Identities=26% Similarity=0.403 Sum_probs=39.8
Q ss_pred CCCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccC
Q psy17912 122 CVPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQR 194 (779)
Q Consensus 122 ~~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~ 194 (779)
..|..+.+|+++++|+-+.+.+.. ..-=++|.+|||||||. .+..++.++..+.
T Consensus 100 ~Ip~~i~~~e~LglP~i~~~~~~~------------------~~GLILVTGpTGSGKST-TlAamId~iN~~~ 153 (353)
T COG2805 100 LIPSKIPTLEELGLPPIVRELAES------------------PRGLILVTGPTGSGKST-TLAAMIDYINKHK 153 (353)
T ss_pred ccCccCCCHHHcCCCHHHHHHHhC------------------CCceEEEeCCCCCcHHH-HHHHHHHHHhccC
Confidence 478889999999999887774321 11137899999999994 4566777777653
No 332
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.91 E-value=0.13 Score=58.56 Aligned_cols=50 Identities=8% Similarity=0.273 Sum_probs=30.2
Q ss_pred CCeeEEEEccchhhhcCC-chHHHHHHHhhcC-CCCceEEeeccccHHHHHH
Q psy17912 274 HRTSYLVLDEADRMLDMG-FEPQIRKIIGQIR-PDRQVLMWSATWPKEVQKL 323 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~-f~~~l~~il~~l~-~~~qilllSAT~~~~v~~l 323 (779)
.++++|+|||+|.+.... ....+..++..+. ...++++.|.+.|.++..+
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l 252 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAM 252 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhh
Confidence 467899999999876543 2334445554332 3456666555556665443
No 333
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=94.84 E-value=0.23 Score=56.76 Aligned_cols=109 Identities=16% Similarity=0.195 Sum_probs=57.4
Q ss_pred CCEEEEccCCCChhHHHHHHHHH-HHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhh
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIV-HVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQ 244 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~-~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~ 244 (779)
..+++.|++|+|||. ++.++. .+.... .+.+++++.+ .++..+....+....
T Consensus 142 npl~i~G~~G~GKTH--Ll~Ai~~~l~~~~-----~~~~v~yv~~-~~f~~~~~~~l~~~~------------------- 194 (450)
T PRK14087 142 NPLFIYGESGMGKTH--LLKAAKNYIESNF-----SDLKVSYMSG-DEFARKAVDILQKTH------------------- 194 (450)
T ss_pred CceEEECCCCCcHHH--HHHHHHHHHHHhC-----CCCeEEEEEH-HHHHHHHHHHHHHhh-------------------
Confidence 358999999999993 333333 333211 2346666555 556555444433200
Q ss_pred HHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC-chHHHHHHHhhcCC-CCceEEeeccccHHH
Q psy17912 245 VKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG-FEPQIRKIIGQIRP-DRQVLMWSATWPKEV 320 (779)
Q Consensus 245 ~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~-f~~~l~~il~~l~~-~~qilllSAT~~~~v 320 (779)
+.+..+.. .+.++++|||||+|.+.... ....+..++..+.. ..|+|+.|-..|..+
T Consensus 195 ---------------~~~~~~~~----~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 195 ---------------KEIEQFKN----EICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ---------------hHHHHHHH----HhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 01111111 14467899999999875432 33445555555433 345555444444443
No 334
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.83 E-value=0.3 Score=56.65 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=26.1
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
.+.+++||||||.|....| ..+.+.+...++...+|+.|
T Consensus 118 ~~~kV~iIDE~~~ls~~a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHHHH-HHHHHHHhccCCCeEEEEEE
Confidence 4678999999998876544 34556666655555555544
No 335
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=94.82 E-value=0.038 Score=46.18 Aligned_cols=44 Identities=34% Similarity=0.548 Sum_probs=39.8
Q ss_pred hHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 568 QERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+++...|+..+++...+ ||+.++.||+.++++|+.|+..|+++.
T Consensus 1 ~~l~~~l~~~~~~~~~~---~~~~~~~~r~~~~~~f~~~~~~vli~t 44 (82)
T smart00490 1 EELAELLKELGIKVARL---HGGLSQEEREEILEKFNNGKIKVLVAT 44 (82)
T ss_pred CHHHHHHHHCCCeEEEE---ECCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 35677888889998888 999999999999999999999999986
No 336
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.78 E-value=0.01 Score=58.34 Aligned_cols=123 Identities=21% Similarity=0.215 Sum_probs=51.8
Q ss_pred EEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHh
Q psy17912 169 VAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKAL 248 (779)
Q Consensus 169 ii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l 248 (779)
++.|+-|-|||.+.-+.+...+.. ...+++|.+|+.+-++...+.+..-.+..+++..... .........
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-------~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~---~~~~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-------GKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKK---RIGQIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS------------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-------cCceEEEecCCHHHHHHHHHHHHhhcccccccccccc---ccccccccc
Confidence 578999999996544333221111 1247999999999888766655554443343320000 000000111
Q ss_pred hcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccc
Q psy17912 249 QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 249 ~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~ 316 (779)
..+..|-+..|..+... ....++||||||=.+. .+.+.+++.. ...++||.|+
T Consensus 71 ~~~~~i~f~~Pd~l~~~-------~~~~DlliVDEAAaIp----~p~L~~ll~~----~~~vv~stTi 123 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAE-------KPQADLLIVDEAAAIP----LPLLKQLLRR----FPRVVFSTTI 123 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS-----HHHHHHHHCC----SSEEEEEEEB
T ss_pred cccceEEEECCHHHHhC-------cCCCCEEEEechhcCC----HHHHHHHHhh----CCEEEEEeec
Confidence 12457888888554432 1235899999997655 4456666543 3467778886
No 337
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.77 E-value=0.13 Score=54.12 Aligned_cols=51 Identities=24% Similarity=0.339 Sum_probs=33.5
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAND 223 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 223 (779)
++.++++.||+|+|||..+..-+...+ . . | .-++++++.+|+.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~-~-~------g-~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL-K-A------G-ISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH-H-c------C-CeEEEEEHHHHHHHHHHHHhc
Confidence 778999999999999954433333332 2 1 3 345666788888876655443
No 338
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=94.74 E-value=0.37 Score=56.46 Aligned_cols=49 Identities=14% Similarity=0.263 Sum_probs=30.4
Q ss_pred CCCeeEEEEccchhhhcCC-chHHHHHHHhhcCC-CCceEEeeccccHHHH
Q psy17912 273 LHRTSYLVLDEADRMLDMG-FEPQIRKIIGQIRP-DRQVLMWSATWPKEVQ 321 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~-f~~~l~~il~~l~~-~~qilllSAT~~~~v~ 321 (779)
+.++++|||||+|.+.... ....+..++..+.. +.++|+.|-..|.++.
T Consensus 375 y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~ 425 (617)
T PRK14086 375 YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLV 425 (617)
T ss_pred hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhh
Confidence 4457899999999876543 33445556655433 4667765555555543
No 339
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.73 E-value=0.33 Score=52.72 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHh----cCC---CEEEEccCCCChhHHHHHHH
Q psy17912 148 FQAPTAIQAQGWPIAL----SGC---DLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 148 ~~~p~~~Q~~~i~~il----~g~---dvii~apTGsGKTl~~~lp~ 186 (779)
+..++|+|..++..+. +++ -.++.||.|.||+..+...+
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA 47 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALA 47 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHH
Confidence 3467899999997766 343 48999999999997654433
No 340
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=94.69 E-value=0.22 Score=58.90 Aligned_cols=38 Identities=16% Similarity=0.222 Sum_probs=23.4
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEe
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMW 312 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilll 312 (779)
....++||||||+|....+. .+.+++..-++...+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~a~N-ALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHHHHH-HHHHHHHcCCCCeEEEEe
Confidence 46789999999998754333 444455543334444444
No 341
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.68 E-value=0.23 Score=54.75 Aligned_cols=130 Identities=17% Similarity=0.178 Sum_probs=67.8
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE-ccC-HHHHHHHHHHHHHhcccCCceEEEEeCCCCCh
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL-APT-RELAQQIETVANDFGSATATRVACVFGGAPKG 242 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil-~Pt-r~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~ 242 (779)
++.+++++|||+|||....-.+... ... +.++.++ +-+ +.-|. +.++.++...++.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l-~~~-------g~~V~lItaDtyR~gAv---eQLk~yae~lgvpv~--------- 265 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQL-LKQ-------NRTVGFITTDTFRSGAV---EQFQGYADKLDVELI--------- 265 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH-HHc-------CCeEEEEeCCccCccHH---HHHHHHhhcCCCCEE---------
Confidence 5578899999999997755444332 221 2234433 322 32222 233444443344321
Q ss_pred hhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcC-CchHHHHHHHhhcCCCCceEEeeccccH-HH
Q psy17912 243 PQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWPK-EV 320 (779)
Q Consensus 243 ~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~~-~v 320 (779)
+..+|..+.+.+..-. ....+++|+||=+-+.... .....+..+.....++.-++.+|||... ++
T Consensus 266 ------------~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~ 332 (407)
T PRK12726 266 ------------VATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADV 332 (407)
T ss_pred ------------ecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHH
Confidence 2235666555443211 1245789999988664321 1233455555555565556778886543 44
Q ss_pred HHHHHHh
Q psy17912 321 QKLAEDF 327 (779)
Q Consensus 321 ~~l~~~~ 327 (779)
...+..|
T Consensus 333 ~~i~~~f 339 (407)
T PRK12726 333 MTILPKL 339 (407)
T ss_pred HHHHHhc
Confidence 4444443
No 342
>PRK09183 transposase/IS protein; Provisional
Probab=94.67 E-value=0.26 Score=52.02 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=19.2
Q ss_pred HHhcCCCEEEEccCCCChhHHHHH
Q psy17912 161 IALSGCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 161 ~il~g~dvii~apTGsGKTl~~~l 184 (779)
.+..+.++++.||+|+|||.....
T Consensus 98 ~i~~~~~v~l~Gp~GtGKThLa~a 121 (259)
T PRK09183 98 FIERNENIVLLGPSGVGKTHLAIA 121 (259)
T ss_pred chhcCCeEEEEeCCCCCHHHHHHH
Confidence 355788999999999999955443
No 343
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.63 E-value=0.21 Score=56.35 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=25.3
Q ss_pred CeeEEEEccchhhhcCC-chHHHHHHHhhc-CCCCceEEeeccc-cHHH
Q psy17912 275 RTSYLVLDEADRMLDMG-FEPQIRKIIGQI-RPDRQVLMWSATW-PKEV 320 (779)
Q Consensus 275 ~i~~lViDEaH~l~~~~-f~~~l~~il~~l-~~~~qilllSAT~-~~~v 320 (779)
++++|||||+|.+.... ....+..++..+ ..+.+++ +|++. |..+
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~ii-its~~~p~~l 246 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIV-LTSDRPPKEL 246 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEE-EecCCCHHHH
Confidence 46799999999876542 223344444443 2345555 45554 4443
No 344
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.63 E-value=0.25 Score=58.04 Aligned_cols=41 Identities=17% Similarity=0.205 Sum_probs=25.6
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccc
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~ 316 (779)
.+.+++||||+|+|....+ ..+.+++...++...+|+ ++|-
T Consensus 117 gk~KV~IIDEVh~LS~~A~-NALLKtLEEPP~~v~FIL-aTtd 157 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSF-NALLKTLEEPPEHVKFLF-ATTD 157 (702)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhcCCCCcEEEE-EECC
Confidence 4578999999998765433 345556665444454554 4453
No 345
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.60 E-value=0.53 Score=55.27 Aligned_cols=138 Identities=10% Similarity=0.044 Sum_probs=78.5
Q ss_pred HhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC--------ceEE
Q psy17912 162 ALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA--------TRVA 233 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~--------l~v~ 233 (779)
..+.+-.++.+|=|.|||.+..+.+...+.. .+.+++|.+|...-+.++.+.++...+..+ .++.
T Consensus 184 ~fkq~~tV~taPRqrGKS~iVgi~l~~La~f-------~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv 256 (752)
T PHA03333 184 EYGKCYTAATVPRRCGKTTIMAIILAAMISF-------LEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIV 256 (752)
T ss_pred HHhhcceEEEeccCCCcHHHHHHHHHHHHHh-------cCCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEE
Confidence 3355678889999999997765444433321 246899999999999998888777665332 1122
Q ss_pred EEeCCCCChhh-H-HHhh-cCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcC-CCCce
Q psy17912 234 CVFGGAPKGPQ-V-KALQ-TGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIR-PDRQV 309 (779)
Q Consensus 234 ~~~gg~~~~~~-~-~~l~-~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~-~~~qi 309 (779)
.+.|+...-.- . .... .+..|.+++-. .+...-..+++||||||..+.. ..+..++-.+. .+.++
T Consensus 257 ~vkgg~E~I~f~~p~gak~G~sti~F~Ars-------~~s~RG~~~DLLIVDEAAfI~~----~~l~aIlP~l~~~~~k~ 325 (752)
T PHA03333 257 TLKGTDENLEYISDPAAKEGKTTAHFLASS-------PNAARGQNPDLVIVDEAAFVNP----GALLSVLPLMAVKGTKQ 325 (752)
T ss_pred EeeCCeeEEEEecCcccccCcceeEEeccc-------CCCcCCCCCCEEEEECcccCCH----HHHHHHHHHHccCCCce
Confidence 22222110000 0 0000 01233333211 1222334578999999998765 34444544443 46778
Q ss_pred EEeecccc
Q psy17912 310 LMWSATWP 317 (779)
Q Consensus 310 lllSAT~~ 317 (779)
+++|.+..
T Consensus 326 IiISS~~~ 333 (752)
T PHA03333 326 IHISSPVD 333 (752)
T ss_pred EEEeCCCC
Confidence 88888763
No 346
>KOG0344|consensus
Probab=94.58 E-value=0.29 Score=55.71 Aligned_cols=113 Identities=21% Similarity=0.271 Sum_probs=83.1
Q ss_pred HHHHHHHHhhhcc--eEEEEecccchhhHHHHHH-hhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEE-------
Q psy17912 543 ERDRVLNEFRIGR--ASILVSHYNKSQQERDRVL-NEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILV------- 612 (779)
Q Consensus 543 ~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 612 (779)
+.=.+.+-+..|- +.+||.-++.-|-|+-..| -=+++....| ||..+|.+||..+..||.|+--+|+
T Consensus 374 K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vI---h~e~~~~qrde~~~~FR~g~IwvLicTdll~R 450 (593)
T KOG0344|consen 374 KLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVI---HGERSQKQRDETMERFRIGKIWVLICTDLLAR 450 (593)
T ss_pred HHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeE---ecccchhHHHHHHHHHhccCeeEEEehhhhhc
Confidence 4444666677776 7789999999999999999 6777777777 9999999999999999999988765
Q ss_pred ----------eccccchhHH---hhhhhhhcccceeEEeeccccchhHHhhhhhcceee
Q psy17912 613 ----------SHYNKSQQER---DRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIG 658 (779)
Q Consensus 613 ----------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (779)
..|.-+|--- -||=.-=|-|+.+-.++.|.+..-++-|++.|+.+.
T Consensus 451 GiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~~ 509 (593)
T KOG0344|consen 451 GIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVMEQ 509 (593)
T ss_pred cccccCcceEEecCCCchhHHHHHHhhccCCCCCCcceEEEeccccchhhhhHHHHHHH
Confidence 4455444322 233112223334677888998888888888887654
No 347
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.56 E-value=0.28 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.354 Sum_probs=16.8
Q ss_pred CCCEEEEccCCCChhHHHHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~ 186 (779)
++.++++||||+|||.+....+
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa 215 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLA 215 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3468899999999997654433
No 348
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=94.54 E-value=0.84 Score=52.04 Aligned_cols=49 Identities=10% Similarity=0.369 Sum_probs=27.6
Q ss_pred CeeEEEEccchhhhcCC-chHHHHHHHhhcC-CCCceEEeeccccHHHHHH
Q psy17912 275 RTSYLVLDEADRMLDMG-FEPQIRKIIGQIR-PDRQVLMWSATWPKEVQKL 323 (779)
Q Consensus 275 ~i~~lViDEaH~l~~~~-f~~~l~~il~~l~-~~~qilllSAT~~~~v~~l 323 (779)
++++|+|||+|.+.+.. ....+..++..+. ...++++.|...|..+..+
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l 244 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEF 244 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHH
Confidence 47799999999876542 2234444444433 2445555444455554443
No 349
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=94.53 E-value=0.095 Score=57.23 Aligned_cols=19 Identities=21% Similarity=0.195 Sum_probs=15.7
Q ss_pred CCEEEEccCCCChhHHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~l 184 (779)
.++|+.||+|+|||..+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 3799999999999966544
No 350
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.47 E-value=0.1 Score=58.69 Aligned_cols=33 Identities=15% Similarity=0.065 Sum_probs=25.8
Q ss_pred CCHHHHHHHHHHhcCCCEEEEccCCCChhHHHH
Q psy17912 151 PTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 151 p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~ 183 (779)
+.......+..+..++++++.+|+|+|||..+.
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 334455666777789999999999999996654
No 351
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.47 E-value=0.44 Score=48.96 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=30.6
Q ss_pred CCCeeEEEEccchhhhcCC-chHHHHHHHhhcC-CCCceEEeeccccHHH
Q psy17912 273 LHRTSYLVLDEADRMLDMG-FEPQIRKIIGQIR-PDRQVLMWSATWPKEV 320 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~-f~~~l~~il~~l~-~~~qilllSAT~~~~v 320 (779)
+..+++|+||.+|.+.... +...+..++..+. .+.++|+.|...|.++
T Consensus 95 ~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 95 LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 4468899999999887542 3445555555543 3556666666666544
No 352
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.42 E-value=0.24 Score=52.26 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=15.7
Q ss_pred CCEEEEccCCCChhHHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~l 184 (779)
.++++.||+|+|||..+-+
T Consensus 43 ~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred ceEEEEcCCCCCHHHHHHH
Confidence 4789999999999976533
No 353
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=94.40 E-value=0.83 Score=56.18 Aligned_cols=243 Identities=13% Similarity=0.091 Sum_probs=132.0
Q ss_pred hHHHHHHHHHhccCCCCcEEEEecchh----HHHHHHHHHHhCC--CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 360 DYKLQGLLSQIGSERTSKTIIFVETKR----KADDITRSVRNKG--WAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 360 ~~~L~~ll~~i~~~~~~kvLVF~~s~~----~ae~L~~~L~~~g--~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
...+.-++..+...+..+.|++-|++. +.+.+.+++...+ +.+..|+|+.++.+|+.+++ +..+||++|.
T Consensus 100 e~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~----~pp~IllTNp 175 (851)
T COG1205 100 ESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIR----NPPDILLTNP 175 (851)
T ss_pred HHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHh----CCCCEEEeCH
Confidence 344556666666666778999999985 4556666666666 88999999999999986555 7899999986
Q ss_pred -cccccc----ccCcccccccccceeEEEE----cCC--CCCHHHHH----HHhccCCCCCCeEEEEEcChHHHHHHHHh
Q psy17912 434 -NKSQQE----RDRVLNEFRIGRASILVSQ----YKE--SQQKRDRV----LNEFRIGRASILVSHYNKSQQERDRVLNE 498 (779)
Q Consensus 434 -v~~~GI----Dip~v~~~~~~~~~~~VI~----y~~--p~s~~~yi----QR~GRaGR~g~~~~~~~~~~~e~~~~l~e 498 (779)
++..-+ |-+. ......-++|++ |.- -.++.-.+ +++++-|..- ..++.+..-........+
T Consensus 176 dMLh~~llr~~~~~~---~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~~~~~~~~~~~-q~i~~SAT~~np~e~~~~ 251 (851)
T COG1205 176 DMLHYLLLRNHDAWL---WLLRNLKYLVVDELHTYRGVQGSEVALLLRRLLRRLRRYGSPL-QIICTSATLANPGEFAEE 251 (851)
T ss_pred HHHHHHhccCcchHH---HHHhcCcEEEEecceeccccchhHHHHHHHHHHHHHhccCCCc-eEEEEeccccChHHHHHH
Confidence 333322 2111 122223344444 221 12333333 3333333211 112222111111222222
Q ss_pred hhccccceeeccccccHHHHHHhhhhhcccccchhhh---cccccHHHHHH-HHHHhhhcceEEEEecccchhhHHH---
Q psy17912 499 FRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS---HYNKSQQERDR-VLNEFRIGRASILVSHYNKSQQERD--- 571 (779)
Q Consensus 499 ~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~--- 571 (779)
+..-.....+..-......+. +.....-+.-. -..+-..+-+. +-...+.|...|.|+.+-+.+..++
T Consensus 252 l~~~~f~~~v~~~g~~~~~~~-----~~~~~p~~~~~~~~~r~s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~ 326 (851)
T COG1205 252 LFGRDFEVPVDEDGSPRGLRY-----FVRREPPIRELAESIRRSALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSP 326 (851)
T ss_pred hcCCcceeeccCCCCCCCceE-----EEEeCCcchhhhhhcccchHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhch
Confidence 211111110110000000000 00000000000 01122233333 5556788999999999988888886
Q ss_pred -HHHhhcC-ccceeEeeeccchhhhhHhhHhhhhhcCCceeEEecc
Q psy17912 572 -RVLNEFR-IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHY 615 (779)
Q Consensus 572 -~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (779)
+.+...+ ---.+|.+.|++-.-.||-++..+||.|+...|+|-+
T Consensus 327 ~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~ 372 (851)
T COG1205 327 RRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATN 372 (851)
T ss_pred hHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecch
Confidence 5555555 2234577789999999999999999999999999854
No 354
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.38 E-value=0.2 Score=59.09 Aligned_cols=40 Identities=15% Similarity=0.265 Sum_probs=25.6
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
+...++|||||+|.|....+ ..+.+.+...++...+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~a~-naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTAAF-NALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHHHH-HHHHHHHHhCCCCeEEEEEe
Confidence 45678999999999875432 24445555545555555544
No 355
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.37 E-value=0.3 Score=63.77 Aligned_cols=127 Identities=18% Similarity=0.213 Sum_probs=74.9
Q ss_pred CCCCHHHHHHHHHHhcC--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc
Q psy17912 149 QAPTAIQAQGWPIALSG--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 226 (779)
..+++-|.+|+..++.+ +-+++.|..|+|||... -.++..+.... ...+..++.++||-.-+..+. +
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~---~~~~~~V~glAPTgrAAk~L~----e--- 1034 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLP---ESERPRVVGLGPTHRAVGEMR----S--- 1034 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhh---cccCceEEEECCcHHHHHHHH----h---
Confidence 46899999999999975 56899999999999543 22222222110 113557889999987766433 2
Q ss_pred cCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHH----HcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhh
Q psy17912 227 ATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYL----EQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQ 302 (779)
Q Consensus 227 ~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l----~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~ 302 (779)
.++.. .|..+|+... ..+......-++|||||+=.+.. ..+..++..
T Consensus 1035 -~Gi~A------------------------~TI~s~L~~~~~~~~~~~~~~~~~~llIVDEaSMv~~----~~m~~Ll~~ 1085 (1747)
T PRK13709 1035 -AGVDA------------------------QTLASFLHDTQLQQRSGETPDFSNTLFLLDESSMVGN----TDMARAYAL 1085 (1747)
T ss_pred -cCcch------------------------hhHHHHhcccccccccccCCCCCCcEEEEEccccccH----HHHHHHHHh
Confidence 13221 1222222211 01111223458999999976553 345556655
Q ss_pred cCC-CCceEEeecc
Q psy17912 303 IRP-DRQVLMWSAT 315 (779)
Q Consensus 303 l~~-~~qilllSAT 315 (779)
+.. ..++|++.=+
T Consensus 1086 ~~~~garvVLVGD~ 1099 (1747)
T PRK13709 1086 IAAGGGRAVSSGDT 1099 (1747)
T ss_pred hhcCCCEEEEecch
Confidence 543 5677777644
No 356
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.37 E-value=0.4 Score=46.76 Aligned_cols=42 Identities=12% Similarity=0.236 Sum_probs=27.7
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccc
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~ 316 (779)
....++||||||.|... ....+.++++.-+++..++++|...
T Consensus 101 ~~~KviiI~~ad~l~~~-a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEE-AQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-HH-HHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhHH-HHHHHHHHhcCCCCCEEEEEEECCh
Confidence 56889999999987654 3446666777665566666655443
No 357
>PRK04195 replication factor C large subunit; Provisional
Probab=94.32 E-value=0.24 Score=57.29 Aligned_cols=41 Identities=15% Similarity=-0.010 Sum_probs=26.2
Q ss_pred CcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc---CCCEEEEccCCCChhHHH
Q psy17912 130 FEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALS---GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 130 f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~---g~dvii~apTGsGKTl~~ 182 (779)
++++-..+...+.+. ..+....+ .+.+++.||+|+|||..+
T Consensus 13 l~dlvg~~~~~~~l~------------~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 13 LSDVVGNEKAKEQLR------------EWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHhcCCHHHHHHHH------------HHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 555555666665554 22222223 467999999999999554
No 358
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.28 E-value=0.35 Score=56.81 Aligned_cols=21 Identities=24% Similarity=0.131 Sum_probs=16.5
Q ss_pred CCEEEEccCCCChhHHHHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~ 186 (779)
+..|++||.|+|||.++-+.+
T Consensus 39 hayLf~Gp~GtGKTt~Ak~lA 59 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAKIFA 59 (559)
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 347889999999997765544
No 359
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=94.25 E-value=0.085 Score=64.02 Aligned_cols=127 Identities=24% Similarity=0.261 Sum_probs=94.1
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 229 (779)
.|+++|.-.--.+.+|+ |+.+.||=|||+++.+|++..... |.-|-||+..--||..=.+++..+...+|
T Consensus 138 ~~ydVQLiGgivLh~G~--IAEM~TGEGKTLvatlp~yLnAL~--------G~gVHvVTvNDYLA~RDaewm~p~y~flG 207 (1025)
T PRK12900 138 VPYDVQLIGGIVLHSGK--ISEMATGEGKTLVSTLPTFLNALT--------GRGVHVVTVNDYLAQRDKEWMNPVFEFHG 207 (1025)
T ss_pred cccchHHhhhHHhhcCC--ccccCCCCCcchHhHHHHHHHHHc--------CCCcEEEeechHhhhhhHHHHHHHHHHhC
Confidence 36666666655555554 889999999999999999887776 33466778888899988889999888999
Q ss_pred ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcCC------cCCCCeeEEEEccchhhh
Q psy17912 230 TRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQGT------INLHRTSYLVLDEADRML 288 (779)
Q Consensus 230 l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~~------~~l~~i~~lViDEaH~l~ 288 (779)
+.|.++..+.+.. .+.....|||+++|..-| .++|..+. ...+.+.+.||||+|.++
T Consensus 208 LtVg~i~~~~~~~--~Rr~aY~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 208 LSVGVILNTMRPE--ERREQYLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred CeeeeeCCCCCHH--HHHHhCCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 9999996654443 333445689999998665 34443321 235678999999999765
No 360
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=94.22 E-value=0.33 Score=57.53 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=24.7
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
+.+.++|||||+|.|....+ ..+.+++...++...+|+.|
T Consensus 117 ~gk~KVIIIDEad~Ls~~A~-NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 117 AGKYKVYIIDEVHMLSKSAF-NAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hCCcEEEEEECccccCHHHH-HHHHHHHHhCCCCcEEEEEe
Confidence 34678999999998764322 24555555544455555544
No 361
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.22 E-value=0.17 Score=56.87 Aligned_cols=146 Identities=13% Similarity=0.215 Sum_probs=80.9
Q ss_pred CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHH-HHHHHHHHHHHhcccCCceEEEEeCCCCChhhH
Q psy17912 167 DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRE-LAQQIETVANDFGSATATRVACVFGGAPKGPQV 245 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~-La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~ 245 (779)
-.++.|..|||||.+..+-++..+.... .+.+++++-|+.. |..-+...+......+++....-....+. ..
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK-----KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC-----CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 3678899999999998888877777641 2457899999887 55555666665544444432111111100 00
Q ss_pred HHhhcCCeEEEeCh-HHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCC--CCceEEeeccccHHHHH
Q psy17912 246 KALQTGAEIVIATP-GRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRP--DRQVLMWSATWPKEVQK 322 (779)
Q Consensus 246 ~~l~~~~~IiV~Tp-e~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~--~~qilllSAT~~~~v~~ 322 (779)
.....+..|++..- +...+ + .....++++.+|||..+... .+..++..++. ....+++|.+++...-.
T Consensus 76 ~~~~~g~~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~~~----~~~~l~~rlr~~~~~~~i~~t~NP~~~~~w 146 (396)
T TIGR01547 76 KILNTGKKFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLTFE----DIKELIPRLRETGGKKFIIFSSNPESPLHW 146 (396)
T ss_pred EecCCCeEEEeecccCChhH-h----hCcceeeeehhhhhhhcCHH----HHHHHHHHhhccCCccEEEEEcCcCCCccH
Confidence 11111345666443 11111 1 12334689999999987533 45555544542 22247788887543333
Q ss_pred HHHHhc
Q psy17912 323 LAEDFL 328 (779)
Q Consensus 323 l~~~~l 328 (779)
+.+.|.
T Consensus 147 ~~~~f~ 152 (396)
T TIGR01547 147 VKKRFI 152 (396)
T ss_pred HHHHHH
Confidence 444443
No 362
>KOG0350|consensus
Probab=94.15 E-value=0.43 Score=53.31 Aligned_cols=67 Identities=15% Similarity=0.232 Sum_probs=52.6
Q ss_pred HHHHhhhcceEEEEecccchhhHHHHHHh-hcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 547 VLNEFRIGRASILVSHYNKSQQERDRVLN-EFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 547 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
.+..++.- ..|+|++...+.--+.++|+ .++=+-...=-.-|.-++.+|-..|..|..|+-.+||..
T Consensus 423 lI~~~k~~-r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcS 490 (620)
T KOG0350|consen 423 LITSNKLN-RTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICS 490 (620)
T ss_pred HHHHhhcc-eEEEEecchHHHHHHHHHHHHHhccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEeh
Confidence 34444444 47889999999999999999 776655544334678899999999999999999999863
No 363
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.14 E-value=0.48 Score=55.67 Aligned_cols=44 Identities=23% Similarity=0.333 Sum_probs=27.1
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccccH
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPK 318 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~ 318 (779)
..+..++||||+|.|....+. .+.+.+...++...+|+.| |-+.
T Consensus 116 ~~~~KVvIIDEah~Lt~~A~N-ALLK~LEEpp~~~~fIL~t-te~~ 159 (584)
T PRK14952 116 QSRYRIFIVDEAHMVTTAGFN-ALLKIVEEPPEHLIFIFAT-TEPE 159 (584)
T ss_pred cCCceEEEEECCCcCCHHHHH-HHHHHHhcCCCCeEEEEEe-CChH
Confidence 356789999999998754333 4555555544455555444 5443
No 364
>KOG0352|consensus
Probab=94.13 E-value=0.95 Score=49.65 Aligned_cols=246 Identities=12% Similarity=0.135 Sum_probs=143.1
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC--CCcEEEEec--ccccccccCcccccccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIG--RASILVSQY--NKSQQERDRVLNEFRIG 450 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G--~~~ILVAT~--v~~~GIDip~v~~~~~~ 450 (779)
++-+|||.|-...+..-.+.|.....++..+.+.|+..||.+++-++..- .+++|--|+ ++.-|+- +-++ .-..
T Consensus 61 ~gITIV~SPLiALIkDQiDHL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ-~lLn-~L~~ 138 (641)
T KOG0352|consen 61 GGITIVISPLIALIKDQIDHLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQ-KLLN-GLAN 138 (641)
T ss_pred CCeEEEehHHHHHHHHHHHHHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHH-HHHH-HHhh
Confidence 34799999999999999999999999999999999999999999999753 578888886 3333331 0000 0000
Q ss_pred cc--eeEEEE-------cCCCCCHHHHHHHhc----cCCCCCCeEEEEEcChHHHHHHHHhhhccccceeeccccccHHH
Q psy17912 451 RA--SILVSQ-------YKESQQKRDRVLNEF----RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQE 517 (779)
Q Consensus 451 ~~--~~~VI~-------y~~p~s~~~yiQR~G----RaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~~~~~~~ 517 (779)
+. .++|++ ++....+ +|+ +.| |.+-+--....-+.+.+-..+++..+.+.+..-++. .-..
T Consensus 139 r~~L~Y~vVDEAHCVSQWGHDFRP-DYL-~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFk----TP~F 212 (641)
T KOG0352|consen 139 RDVLRYIVVDEAHCVSQWGHDFRP-DYL-TLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFK----TPTF 212 (641)
T ss_pred hceeeeEEechhhhHhhhccccCc-chh-hhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhcc----Ccch
Confidence 11 123332 1111111 111 112 222111111112234444456666666655443332 1223
Q ss_pred HHHhhhhhcccccchhhhccccc------HHHHHHHHHHhhhc--ceEEEEecccchhhHHHHHHhhcCccceeEeeecc
Q psy17912 518 RDRVLNEFRIGRASILVSHYNKS------QQERDRVLNEFRIG--RASILVSHYNKSQQERDRVLNEFRIGRASILVSHY 589 (779)
Q Consensus 518 ~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (779)
|+.++. ++-..++-...|... -.-.-+..++-+.+ .+-|+.|.|...|.++.=.|.-.|+||.+- |.
T Consensus 213 R~NLFY--D~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AY---HA 287 (641)
T KOG0352|consen 213 RDNLFY--DNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAY---HA 287 (641)
T ss_pred hhhhhH--HHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHH---hc
Confidence 333321 111111111111100 00000011112222 278999999999999999999999999999 99
Q ss_pred chhhhhHhhHhhhhhcCCceeEEeccccchhHHhhhhhhhcccc--ee-EEeeccccch
Q psy17912 590 NKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGR--AS-ILVSHYNKSQ 645 (779)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~ 645 (779)
+-.-.||--|-+.+-.|+.||++.. +.|-.|- ++ =+|-|+|-+|
T Consensus 288 GLK~~ERTeVQe~WM~~~~PvI~AT------------~SFGMGVDKp~VRFViHW~~~q 334 (641)
T KOG0352|consen 288 GLKKKERTEVQEKWMNNEIPVIAAT------------VSFGMGVDKPDVRFVIHWSPSQ 334 (641)
T ss_pred ccccchhHHHHHHHhcCCCCEEEEE------------eccccccCCcceeEEEecCchh
Confidence 9999999999999999999998763 3344442 22 2566777665
No 365
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.10 E-value=0.28 Score=54.42 Aligned_cols=40 Identities=13% Similarity=0.205 Sum_probs=23.5
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
.....++||||+|.+....+. .+.+.+...++...+++.|
T Consensus 117 ~~~~kviIIDEa~~l~~~a~n-aLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 117 KSRFKVYLIDEVHMLSRHSFN-ALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cCCceEEEEEChhhcCHHHHH-HHHHHHhcCCCCeEEEEEc
Confidence 345789999999988754332 3444444433444455443
No 366
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.10 E-value=0.17 Score=57.45 Aligned_cols=20 Identities=25% Similarity=0.135 Sum_probs=15.9
Q ss_pred CEEEEccCCCChhHHHHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~ 186 (779)
.+|++||.|+|||.++.+.+
T Consensus 42 a~Lf~GP~GtGKTTlAriLA 61 (484)
T PRK14956 42 AYIFFGPRGVGKTTIARILA 61 (484)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37999999999997765443
No 367
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=94.09 E-value=0.1 Score=62.80 Aligned_cols=67 Identities=10% Similarity=0.173 Sum_probs=58.9
Q ss_pred HHHHHHHHh----hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 543 ERDRVLNEF----RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 543 ~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+.+.+.++. ..|++.|+||+|...++.+.+.|.+.|+|...+ |++ |.||+..+..|+.|+..|+|+-
T Consensus 415 K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vL---nak--q~eREa~Iia~Ag~~g~VtIAT 485 (830)
T PRK12904 415 KFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVL---NAK--NHEREAEIIAQAGRPGAVTIAT 485 (830)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceEec---cCc--hHHHHHHHHHhcCCCceEEEec
Confidence 444444444 779999999999999999999999999999999 994 8999999999999999999964
No 368
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.07 E-value=0.39 Score=55.96 Aligned_cols=40 Identities=8% Similarity=-0.011 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccc
Q psy17912 541 QQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGR 581 (779)
Q Consensus 541 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 581 (779)
.++...+++-+..|+.-+=+++..+..=|++ +||+.-+..
T Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~r~~~~~~ 360 (527)
T PRK14969 321 PEDIQLYYQIALHGRRDLGLAPDEYAGFTMT-LLRMLAFRP 360 (527)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH-HHHHhccCC
Confidence 3455566777777777777888888877776 566665544
No 369
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.01 E-value=0.18 Score=54.83 Aligned_cols=66 Identities=24% Similarity=0.211 Sum_probs=41.8
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHH
Q psy17912 141 KKIYEMGFQAPTAIQAQGWPIAL-SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELA 214 (779)
Q Consensus 141 ~~l~~~g~~~p~~~Q~~~i~~il-~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La 214 (779)
+.+.+.|. +++.|.+.+..+. .+.+++++|+||||||.. +-.++..+...+ ..-+++.+=.+.||.
T Consensus 121 ~~lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~-----~~~rivtiEd~~El~ 187 (323)
T PRK13833 121 DDYVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKTTL-ANAVIAEIVASA-----PEDRLVILEDTAEIQ 187 (323)
T ss_pred HHHHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHHhcCC-----CCceEEEecCCcccc
Confidence 34444443 6677777776554 667999999999999943 444555443321 123677777777763
No 370
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=93.98 E-value=0.22 Score=57.49 Aligned_cols=149 Identities=17% Similarity=0.139 Sum_probs=82.1
Q ss_pred HHHHHHHHHHh-----cC----CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHH
Q psy17912 153 AIQAQGWPIAL-----SG----CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVAND 223 (779)
Q Consensus 153 ~~Q~~~i~~il-----~g----~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 223 (779)
|+|.-++..++ .+ +.+++..|=+-|||......++..+.-. ...++.++++++++.-|..+.+.++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~----g~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLD----GEPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcC----CccCceEEEEeCCHHHHHHHHHHHHH
Confidence 56777776666 22 3588888999999977655444444332 12467899999999999999998888
Q ss_pred hcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC--cCCCCeeEEEEccchhhhcCCchHHHHHHHh
Q psy17912 224 FGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT--INLHRTSYLVLDEADRMLDMGFEPQIRKIIG 301 (779)
Q Consensus 224 ~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~--~~l~~i~~lViDEaH~l~~~~f~~~l~~il~ 301 (779)
+........... .. ..... ..-.|.....+.+...+..+. ..=.+.+++|+||+|...+......+..-..
T Consensus 77 ~i~~~~~l~~~~-~~-----~~~~~-~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 77 MIEASPELRKRK-KP-----KIIKS-NKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred HHHhChhhccch-hh-----hhhhh-hceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 765422111000 00 00000 011233222222222222221 2223568999999998765433333333333
Q ss_pred hcCCCCceEEee
Q psy17912 302 QIRPDRQVLMWS 313 (779)
Q Consensus 302 ~l~~~~qilllS 313 (779)
. +++.+++..|
T Consensus 150 ~-r~~pl~~~IS 160 (477)
T PF03354_consen 150 A-RPNPLIIIIS 160 (477)
T ss_pred c-CCCceEEEEe
Confidence 3 3566666554
No 371
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.94 E-value=1.1 Score=49.72 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=14.6
Q ss_pred CCEEEEccCCCChhHHH
Q psy17912 166 CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~ 182 (779)
.|+++.|+||+|||.+.
T Consensus 43 ~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 43 SNIIIYGPTGTGKTATV 59 (366)
T ss_pred ccEEEECCCCCCHhHHH
Confidence 37999999999999664
No 372
>KOG1596|consensus
Probab=93.91 E-value=0.095 Score=53.05 Aligned_cols=20 Identities=10% Similarity=0.082 Sum_probs=14.5
Q ss_pred CCCCCCHHHHHHHHHHhcCC
Q psy17912 147 GFQAPTAIQAQGWPIALSGC 166 (779)
Q Consensus 147 g~~~p~~~Q~~~i~~il~g~ 166 (779)
.|.--+|+|+.....|+-|-
T Consensus 130 EyRVWnPfrSKLAA~I~gGv 149 (317)
T KOG1596|consen 130 EYRVWNPFRSKLAAGILGGV 149 (317)
T ss_pred EEEEeChHHHHHHHHhhcCc
Confidence 45556788888888888663
No 373
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.91 E-value=0.24 Score=60.13 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=71.7
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
..++|-|.+++... ...++|.|..|||||.+...-+...+.... -....+|+|+-|+..|..+.+.+.++....
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~ 81 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN----ASPYSIMAVTFTNKAAAEMRHRIEQLLGTS 81 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC----CChhHeEeeeccHHHHHHHHHHHHHHhccC
Confidence 46899999998643 458999999999999876555544443211 112369999999999999988887764210
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC---cCCCCeeEEEEccchh
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT---INLHRTSYLVLDEADR 286 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~---~~l~~i~~lViDEaH~ 286 (779)
...+.|+|...|...+-+.. ..+ .-.+-|+|+.+.
T Consensus 82 ----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~-~~~f~i~d~~d~ 119 (721)
T PRK11773 82 ----------------------QGGMWVGTFHGLAHRLLRAHWQDANL-PQDFQILDSDDQ 119 (721)
T ss_pred ----------------------CCCCEEEcHHHHHHHHHHHHHHHhCC-CCCCeecCHHHH
Confidence 02577899888865443221 111 123457888764
No 374
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.89 E-value=1.3 Score=49.77 Aligned_cols=132 Identities=17% Similarity=0.157 Sum_probs=64.9
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGP 243 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~ 243 (779)
.+.-+.++||||+|||......+...+.... .....++...+.-.+- .+.+..++.-.++.+..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-----~~~v~~i~~d~~riga--lEQL~~~a~ilGvp~~~--------- 253 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHG-----ADKVALLTTDSYRIGG--HEQLRIYGKLLGVSVRS--------- 253 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CCeEEEEecCCcchhH--HHHHHHHHHHcCCceec---------
Confidence 3456889999999999776543333222211 1123455555533221 22233344333444321
Q ss_pred hHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcC-CchHHHHHHHhhcCCCCceEEeecccc-HHHH
Q psy17912 244 QVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWP-KEVQ 321 (779)
Q Consensus 244 ~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~-~~v~ 321 (779)
+.++..+...+. .+.+.++++||.+-+.... .....+..+.....+...++++|||.. ..+.
T Consensus 254 ------------v~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~ 317 (420)
T PRK14721 254 ------------IKDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLD 317 (420)
T ss_pred ------------CCCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHH
Confidence 223333333332 2566788999986332111 012233333222234456788999964 4455
Q ss_pred HHHHHh
Q psy17912 322 KLAEDF 327 (779)
Q Consensus 322 ~l~~~~ 327 (779)
+.+..|
T Consensus 318 ~~~~~f 323 (420)
T PRK14721 318 EVISAY 323 (420)
T ss_pred HHHHHh
Confidence 555554
No 375
>PF13871 Helicase_C_4: Helicase_C-like
Probab=93.88 E-value=0.18 Score=53.21 Aligned_cols=64 Identities=8% Similarity=-0.073 Sum_probs=49.9
Q ss_pred HHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCC
Q psy17912 416 RVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASI 480 (779)
Q Consensus 416 ~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~ 480 (779)
...+.|.+|+.+|+|-+++++.||-.+.-..+.-. .-.+.|...+|++....+|..||+.|.+.
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nq-r~Rv~i~le~pwsad~aiQ~~GR~hRsnQ 115 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQ-RRRVHITLELPWSADKAIQQFGRTHRSNQ 115 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCC-CceEEEEeeCCCCHHHHHHHhcccccccc
Confidence 55678999999999999999999976643211111 12355677899999999999999999984
No 376
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.83 E-value=0.52 Score=54.46 Aligned_cols=21 Identities=24% Similarity=0.124 Sum_probs=16.8
Q ss_pred CCEEEEccCCCChhHHHHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~ 186 (779)
+.++++||.|+|||.++.+.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~ArilA 64 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARIIA 64 (507)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 369999999999997765543
No 377
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.80 E-value=0.65 Score=54.79 Aligned_cols=43 Identities=19% Similarity=0.332 Sum_probs=26.2
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecccc
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWP 317 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~ 317 (779)
..+..++||||+|.|....+ ..+.+.+..-++...+|+ .+|-+
T Consensus 117 ~~~~KVvIIdev~~Lt~~a~-naLLk~LEepp~~~~fIl-~t~~~ 159 (576)
T PRK14965 117 RSRYKIFIIDEVHMLSTNAF-NALLKTLEEPPPHVKFIF-ATTEP 159 (576)
T ss_pred cCCceEEEEEChhhCCHHHH-HHHHHHHHcCCCCeEEEE-EeCCh
Confidence 45688999999998775433 355555555444444444 44533
No 378
>COG1204 Superfamily II helicase [General function prediction only]
Probab=93.79 E-value=1.6 Score=52.98 Aligned_cols=235 Identities=16% Similarity=0.175 Sum_probs=127.0
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHH---hCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVR---NKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQ 438 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~---~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~G 438 (779)
.+..+++.+.. .+.++|-.||++.-|++.++.++ ..|++|..++|+++...... .+..|+|+|. +-
T Consensus 64 A~lai~~~l~~-~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~l-------~~~~ViVtT~---EK 132 (766)
T COG1204 64 ALLAILSTLLE-GGGKVVYIVPLKALAEEKYEEFSRLEELGIRVGISTGDYDLDDERL-------ARYDVIVTTP---EK 132 (766)
T ss_pred HHHHHHHHHHh-cCCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEecCCcccchhhh-------ccCCEEEEch---HH
Confidence 34444555432 25789999999999999999998 67999999999998544221 4789999995 22
Q ss_pred cccCcccc-cccccceeEEEE------cC-CCCCHHHHHHHhccCC-CCCCeEEEEEcChHHHHHHHHhhhccccceeec
Q psy17912 439 ERDRVLNE-FRIGRASILVSQ------YK-ESQQKRDRVLNEFRIG-RASILVSHYNKSQQERDRVLNEFRIGRASILVS 509 (779)
Q Consensus 439 IDip~v~~-~~~~~~~~~VI~------y~-~p~s~~~yiQR~GRaG-R~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~ 509 (779)
+|.---+. ..+..+-.+||+ .. --...+..+.|.=|-+ .....+..-+..+.+. +-+|.-.+.. .+
T Consensus 133 ~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~e---vA~wL~a~~~--~~ 207 (766)
T COG1204 133 LDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEE---VADWLNAKLV--ES 207 (766)
T ss_pred hhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHH---HHHHhCCccc--cc
Confidence 22000000 001111123322 11 1122333333332211 1111222222222221 1222111111 11
Q ss_pred cccccHHHHHHhhhhh---cccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhh----------
Q psy17912 510 HYNKSQQERDRVLNEF---RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNE---------- 576 (779)
Q Consensus 510 ~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------- 576 (779)
.+......+.-..... .-+... .........-.+.+++.-+.|...++|+|+.+.+-...+-|+.
T Consensus 208 ~~rp~~l~~~v~~~~~~~~~~~~~k--~~~~~~~~~~~~~v~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~ 285 (766)
T COG1204 208 DWRPVPLRRGVPYVGAFLGADGKKK--TWPLLIDNLALELVLESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDE 285 (766)
T ss_pred CCCCcccccCCccceEEEEecCccc--cccccchHHHHHHHHHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhh
Confidence 1111111111110000 011111 1112233456677999999999999999999999888888872
Q ss_pred ---cCccceeEe---------------------eeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 577 ---FRIGRASIL---------------------VSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 577 ---~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
..+++-.+. .-|.+-+-..|++|=..||.|+-.||||-
T Consensus 286 ~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~T 347 (766)
T COG1204 286 KIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVST 347 (766)
T ss_pred hhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEec
Confidence 233343333 35888999999999999999999999873
No 379
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.73 E-value=0.19 Score=61.04 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
..++|-|.+++... ..+++|.|..|||||.+...-+...+.... -...++|+|+.|+..|..+.+.+.++....
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~----v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~ 76 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRVLTHRIAWLLSVEN----ASPHSIMAVTFTNKAAAEMRHRIGALLGTS 76 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHHHHHHHHHHHHcCC----CCHHHeEeeeccHHHHHHHHHHHHHHhccc
Confidence 46899999998643 457999999999999876554444443211 123379999999999999888887764210
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC---cCCCCeeEEEEccchh
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT---INLHRTSYLVLDEADR 286 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~---~~l~~i~~lViDEaH~ 286 (779)
...+.|+|...|...+-+.. ..+. -.+-|+|+.+.
T Consensus 77 ----------------------~~~~~i~TfHs~~~~iLr~~~~~~g~~-~~f~i~d~~d~ 114 (715)
T TIGR01075 77 ----------------------ARGMWIGTFHGLAHRLLRAHHLDAGLP-QDFQILDSDDQ 114 (715)
T ss_pred ----------------------ccCcEEEcHHHHHHHHHHHHHHHhCCC-CCCeecCHHHH
Confidence 02577888887764332211 1111 13457787764
No 380
>PRK14873 primosome assembly protein PriA; Provisional
Probab=93.72 E-value=0.27 Score=58.60 Aligned_cols=78 Identities=14% Similarity=0.188 Sum_probs=67.3
Q ss_pred cchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC-C-CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy17912 357 HEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK-G-WAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYN 434 (779)
Q Consensus 357 ~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~-g-~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v 434 (779)
..|...+..++..... .++++||.+|....+.++.+.|+.. + ..+..+|++++..+|.+......+|+.+|+|.|..
T Consensus 171 SGKTevyl~~i~~~l~-~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRS 249 (665)
T PRK14873 171 EDWARRLAAAAAATLR-AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRS 249 (665)
T ss_pred CcHHHHHHHHHHHHHH-cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcce
Confidence 4677777788777654 3778999999999999999999865 4 67999999999999999999999999999999964
Q ss_pred c
Q psy17912 435 K 435 (779)
Q Consensus 435 ~ 435 (779)
+
T Consensus 250 A 250 (665)
T PRK14873 250 A 250 (665)
T ss_pred e
Confidence 3
No 381
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.69 E-value=0.74 Score=51.85 Aligned_cols=131 Identities=14% Similarity=0.182 Sum_probs=70.2
Q ss_pred CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEcc--CHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhh
Q psy17912 167 DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAP--TRELAQQIETVANDFGSATATRVACVFGGAPKGPQ 244 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~P--tr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~ 244 (779)
.++++|++|+|||++..-.+. ++... +.++++++. .|.-|.+ .++.++...++.+.......+
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~-~l~~~-------G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~d---- 166 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAY-YYQRK-------GFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTESD---- 166 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHH-HHHHC-------CCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCCC----
Confidence 578999999999976544333 23221 334555543 3444433 333444444555543332221
Q ss_pred HHHhhcCCeEEEeChHHHH-HHHHcCCcCCCCeeEEEEccchhhhcC-CchHHHHHHHhhcCCCCceEEeeccccHHHHH
Q psy17912 245 VKALQTGAEIVIATPGRLI-DYLEQGTINLHRTSYLVLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWPKEVQK 322 (779)
Q Consensus 245 ~~~l~~~~~IiV~Tpe~Ll-~~l~~~~~~l~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~~~v~~ 322 (779)
|..+. +.+.. ..-..+++||||=+-++... .....+..+.....|+.-++.++||...+...
T Consensus 167 --------------p~~i~~~~l~~--~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~ 230 (429)
T TIGR01425 167 --------------PVKIASEGVEK--FKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEA 230 (429)
T ss_pred --------------HHHHHHHHHHH--HHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHH
Confidence 11110 11111 00134678888888654322 13445666666667777788899998766666
Q ss_pred HHHHhc
Q psy17912 323 LAEDFL 328 (779)
Q Consensus 323 l~~~~l 328 (779)
.++.|.
T Consensus 231 ~a~~F~ 236 (429)
T TIGR01425 231 QAKAFK 236 (429)
T ss_pred HHHHHH
Confidence 666664
No 382
>KOG0298|consensus
Probab=93.67 E-value=0.2 Score=61.51 Aligned_cols=148 Identities=16% Similarity=0.041 Sum_probs=89.4
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhcc----------CCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEE
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQ----------RPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVA 233 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~----------~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~ 233 (779)
.|+.++..-..|.|||.+-+...+...-.. ..........+|||+|. ++..||.+++...+... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 356788899999999988665544332111 00011123468999997 66678999998887654 6776
Q ss_pred EEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC--------------cC----CCC--eeEEEEccchhhhcCCch
Q psy17912 234 CVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT--------------IN----LHR--TSYLVLDEADRMLDMGFE 293 (779)
Q Consensus 234 ~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~--------------~~----l~~--i~~lViDEaH~l~~~~f~ 293 (779)
...|-.........-.-.+|||++|+..|..-+.... .. |-. +=-|++|||+.+-.. .
T Consensus 451 ~Y~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvess--s 528 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESS--S 528 (1394)
T ss_pred EEechhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcch--H
Confidence 6666433221111122348999999999876553221 11 111 223899999976542 3
Q ss_pred HHHHHHHhhcCCCCceEEeeccc
Q psy17912 294 PQIRKIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 294 ~~l~~il~~l~~~~qilllSAT~ 316 (779)
....+.+..+ +....-++|.|+
T Consensus 529 S~~a~M~~rL-~~in~W~VTGTP 550 (1394)
T KOG0298|consen 529 SAAAEMVRRL-HAINRWCVTGTP 550 (1394)
T ss_pred HHHHHHHHHh-hhhceeeecCCc
Confidence 4444555544 345677888884
No 383
>PHA00729 NTP-binding motif containing protein
Probab=93.67 E-value=0.45 Score=48.80 Aligned_cols=74 Identities=12% Similarity=0.172 Sum_probs=41.1
Q ss_pred eEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhh-hcCCch----HHHHHHHhhcCCCCceEEeeccccHHHHHHHHH
Q psy17912 253 EIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRM-LDMGFE----PQIRKIIGQIRPDRQVLMWSATWPKEVQKLAED 326 (779)
Q Consensus 253 ~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l-~~~~f~----~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~ 326 (779)
..++.+.+.|++.+........++++|||||+-.- ....|. ..+..+...+++...++.+...-|.++...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 45666666666665432212345678999994311 111111 223344445555667777877777777666655
No 384
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.66 E-value=0.8 Score=51.30 Aligned_cols=17 Identities=24% Similarity=0.387 Sum_probs=14.8
Q ss_pred CCEEEEccCCCChhHHH
Q psy17912 166 CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~ 182 (779)
.++++.||+|+|||.+.
T Consensus 56 ~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 57999999999999653
No 385
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.62 E-value=0.87 Score=48.39 Aligned_cols=132 Identities=20% Similarity=0.256 Sum_probs=68.1
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc--cCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChh
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA--PTRELAQQIETVANDFGSATATRVACVFGGAPKGP 243 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~--Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~ 243 (779)
+-+++++|+|+|||.+..-.+... .. .+.+++++. +.+.-+.+ .+..++...++.+. ......
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l-~~-------~g~~V~li~~D~~r~~a~~---ql~~~~~~~~i~~~--~~~~~~-- 137 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKL-KK-------QGKSVLLAAGDTFRAAAIE---QLEEWAKRLGVDVI--KQKEGA-- 137 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH-Hh-------cCCEEEEEeCCCCCHHHHH---HHHHHHHhCCeEEE--eCCCCC--
Confidence 467788999999997765544332 22 134565554 33443332 22223332344332 111111
Q ss_pred hHHHhhcCCeEEEeChHH-HHHHHHcCCcCCCCeeEEEEccchhhhcC-CchHHHHHHHhhcC------CCCceEEeecc
Q psy17912 244 QVKALQTGAEIVIATPGR-LIDYLEQGTINLHRTSYLVLDEADRMLDM-GFEPQIRKIIGQIR------PDRQVLMWSAT 315 (779)
Q Consensus 244 ~~~~l~~~~~IiV~Tpe~-Ll~~l~~~~~~l~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~------~~~qilllSAT 315 (779)
.|.. ..+.+.. .....+++||||=+-++... .....+..+..... ++-.++.++||
T Consensus 138 --------------dp~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~ 201 (272)
T TIGR00064 138 --------------DPAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT 201 (272)
T ss_pred --------------CHHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC
Confidence 0111 1111111 01345789999988765421 23345556655554 66778899999
Q ss_pred ccHHHHHHHHHhc
Q psy17912 316 WPKEVQKLAEDFL 328 (779)
Q Consensus 316 ~~~~v~~l~~~~l 328 (779)
...+....+..|.
T Consensus 202 ~~~~~~~~~~~f~ 214 (272)
T TIGR00064 202 TGQNALEQAKVFN 214 (272)
T ss_pred CCHHHHHHHHHHH
Confidence 8765545555554
No 386
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.61 E-value=0.41 Score=56.46 Aligned_cols=44 Identities=16% Similarity=0.242 Sum_probs=25.6
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccccH
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPK 318 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~ 318 (779)
..+++++||||+|+|....|. .+.+.+..-++...+| |.+|-+.
T Consensus 122 ~g~~KV~IIDEvh~Ls~~a~N-aLLKtLEEPP~~~~fI-L~Ttd~~ 165 (618)
T PRK14951 122 QGRFKVFMIDEVHMLTNTAFN-AMLKTLEEPPEYLKFV-LATTDPQ 165 (618)
T ss_pred cCCceEEEEEChhhCCHHHHH-HHHHhcccCCCCeEEE-EEECCch
Confidence 346889999999998765433 3444444433334444 4445433
No 387
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.59 E-value=0.38 Score=52.00 Aligned_cols=48 Identities=13% Similarity=0.129 Sum_probs=26.1
Q ss_pred CCCeeEEEEccchhhhcCCchH-HH-HHHHhh-cCCCCceEEeeccccHHH
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEP-QI-RKIIGQ-IRPDRQVLMWSATWPKEV 320 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~-~l-~~il~~-l~~~~qilllSAT~~~~v 320 (779)
+.++++|||||...-....|.. .+ ..|+.. +.....+++.|---+.++
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el 265 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDEL 265 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHH
Confidence 4578899999998433222322 33 344443 234556666555444443
No 388
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.49 E-value=1 Score=51.77 Aligned_cols=19 Identities=21% Similarity=0.134 Sum_probs=15.3
Q ss_pred CEEEEccCCCChhHHHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYIAP 185 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp 185 (779)
.+|++||+|+|||..+.+.
T Consensus 38 ~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3799999999999765543
No 389
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.44 E-value=0.92 Score=41.66 Aligned_cols=17 Identities=24% Similarity=0.524 Sum_probs=13.6
Q ss_pred CeeEEEEccchhhhcCC
Q psy17912 275 RTSYLVLDEADRMLDMG 291 (779)
Q Consensus 275 ~i~~lViDEaH~l~~~~ 291 (779)
...+|+|||+|.+....
T Consensus 58 ~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 58 KPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp TSEEEEEETGGGTSHHC
T ss_pred cceeeeeccchhccccc
Confidence 35899999999877654
No 390
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.44 E-value=0.4 Score=49.27 Aligned_cols=134 Identities=13% Similarity=0.141 Sum_probs=67.1
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC-----CceEEEEeCC
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT-----ATRVACVFGG 238 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~-----~l~v~~~~gg 238 (779)
.|..+++.|++|+|||.-.+-.+...+... +-++++++- .+-..++.+.++.+.-.. .-....+...
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~-------ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~ 89 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNF-------GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF 89 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHH-------T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhc-------CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc
Confidence 457899999999999976665555555541 225777763 444566666666653211 0011111111
Q ss_pred CCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC----chHHHHHHHhhcCCCCceEEeec
Q psy17912 239 APKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG----FEPQIRKIIGQIRPDRQVLMWSA 314 (779)
Q Consensus 239 ~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~----f~~~l~~il~~l~~~~qilllSA 314 (779)
...... . -..++.+...+.... .-.+.+.+|||-...+.... +...+..+...++..-.+.++++
T Consensus 90 ~~~~~~--------~--~~~~~~l~~~i~~~i-~~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~ 158 (226)
T PF06745_consen 90 PERIGW--------S--PNDLEELLSKIREAI-EELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTS 158 (226)
T ss_dssp GGGST---------T--SCCHHHHHHHHHHHH-HHHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred cccccc--------c--ccCHHHHHHHHHHHH-HhcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEE
Confidence 000000 0 123444444433211 11123799999998772222 33445555555544445666666
Q ss_pred cc
Q psy17912 315 TW 316 (779)
Q Consensus 315 T~ 316 (779)
..
T Consensus 159 ~~ 160 (226)
T PF06745_consen 159 EM 160 (226)
T ss_dssp EE
T ss_pred cc
Confidence 63
No 391
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.42 E-value=1.1 Score=52.72 Aligned_cols=21 Identities=24% Similarity=0.018 Sum_probs=16.9
Q ss_pred CEEEEccCCCChhHHHHHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYIAPAI 187 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~l 187 (779)
.+|+.+|.|+|||.++.+.+-
T Consensus 40 a~Lf~GPpG~GKTtiArilAk 60 (624)
T PRK14959 40 AYLFSGTRGVGKTTIARIFAK 60 (624)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 588999999999987665443
No 392
>PLN03025 replication factor C subunit; Provisional
Probab=93.39 E-value=0.81 Score=49.84 Aligned_cols=41 Identities=20% Similarity=0.278 Sum_probs=24.8
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccc
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~ 316 (779)
....+|||||||.|.... ...+.+++...++...++ ++++.
T Consensus 98 ~~~kviiiDE~d~lt~~a-q~aL~~~lE~~~~~t~~i-l~~n~ 138 (319)
T PLN03025 98 GRHKIVILDEADSMTSGA-QQALRRTMEIYSNTTRFA-LACNT 138 (319)
T ss_pred CCeEEEEEechhhcCHHH-HHHHHHHHhcccCCceEE-EEeCC
Confidence 357899999999876432 344555555544444444 44443
No 393
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.31 E-value=0.48 Score=51.72 Aligned_cols=40 Identities=15% Similarity=0.303 Sum_probs=24.6
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecc
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSAT 315 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT 315 (779)
....+|||||+|.+... ....+..++...++...+++ +++
T Consensus 124 ~~~~vlilDe~~~l~~~-~~~~L~~~le~~~~~~~~Il-~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRED-AQQALRRIMEQYSRTCRFII-ATR 163 (337)
T ss_pred CCCcEEEEeCcccCCHH-HHHHHHHHHHhccCCCeEEE-EeC
Confidence 45679999999987542 23345555655555555554 444
No 394
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.29 E-value=0.34 Score=54.21 Aligned_cols=45 Identities=24% Similarity=0.418 Sum_probs=27.3
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHH
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKE 319 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~ 319 (779)
.....++||||+|+|.... ...+.+.+..- +...+++++||-+..
T Consensus 115 ~~~~kViiIDead~m~~~a-anaLLk~LEep-~~~~~fIL~a~~~~~ 159 (394)
T PRK07940 115 TGRWRIVVIEDADRLTERA-ANALLKAVEEP-PPRTVWLLCAPSPED 159 (394)
T ss_pred cCCcEEEEEechhhcCHHH-HHHHHHHhhcC-CCCCeEEEEECChHH
Confidence 3467899999999986542 24455555543 334455556654443
No 395
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.26 E-value=0.43 Score=63.74 Aligned_cols=62 Identities=27% Similarity=0.231 Sum_probs=44.4
Q ss_pred CCCCHHHHHHHHHHhcC--CCEEEEccCCCChhHHHH---HHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHH
Q psy17912 149 QAPTAIQAQGWPIALSG--CDLVAIAKTGSGKTLGYI---APAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQI 217 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~~---lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~ 217 (779)
..+++.|.+|+..++.+ +-+++.|..|+|||.... -++...+.. .+..++.++||-.-+..+
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-------~g~~v~glApT~~Aa~~L 1084 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-------EQLQVIGLAPTHEAVGEL 1084 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-------cCCeEEEEeChHHHHHHH
Confidence 46899999999999865 457889999999995541 122222222 256789999997766544
No 396
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.24 E-value=0.78 Score=47.47 Aligned_cols=53 Identities=11% Similarity=0.063 Sum_probs=32.3
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 163 LSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
..+.-+++.+++|+|||...+..+...+.. +.++++++.. +-..+..+.+..+
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--------g~~~~yi~~e-~~~~~~~~~~~~~ 74 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQN--------GYSVSYVSTQ-LTTTEFIKQMMSL 74 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhC--------CCcEEEEeCC-CCHHHHHHHHHHh
Confidence 347789999999999996544433332221 3467888743 3334555555544
No 397
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=93.19 E-value=0.16 Score=61.07 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=54.8
Q ss_pred HHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEE
Q psy17912 547 VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILV 612 (779)
Q Consensus 547 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (779)
+.+....|++.|+||+|...++.+.+.|.+.|+|...+ |++..++|++-|.+.++.|. |+|
T Consensus 433 i~~~~~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~L---na~~~~~Ea~ii~~ag~~g~--VtI 493 (796)
T PRK12906 433 IKERHAKGQPVLVGTVAIESSERLSHLLDEAGIPHAVL---NAKNHAKEAEIIMNAGQRGA--VTI 493 (796)
T ss_pred HHHHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEe---cCCcHHHHHHHHHhcCCCce--EEE
Confidence 34444589999999999999999999999999999988 99999999999999999998 444
No 398
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.17 E-value=0.82 Score=51.21 Aligned_cols=126 Identities=13% Similarity=0.117 Sum_probs=64.5
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc-cC-HHHHHHHHHHHHHhcccCCceEEEEeCCCCChh
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA-PT-RELAQQIETVANDFGSATATRVACVFGGAPKGP 243 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~-Pt-r~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~ 243 (779)
..+++++|||+|||.+....+....... +.++.++. -+ +..+.+ .++.++...++.+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~-------G~~V~Lit~Dt~R~aA~e---QLk~yAe~lgvp~~~--------- 284 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHM-------GKSVSLYTTDNYRIAAIE---QLKRYADTMGMPFYP--------- 284 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhc-------CCeEEEecccchhhhHHH---HHHHHHHhcCCCeee---------
Confidence 3478999999999987665554332221 22343333 22 343333 333343333433211
Q ss_pred hHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhc-CCchHHHHHHHhhcC---CCCceEEeeccccH-
Q psy17912 244 QVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLD-MGFEPQIRKIIGQIR---PDRQVLMWSATWPK- 318 (779)
Q Consensus 244 ~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~-~~f~~~l~~il~~l~---~~~qilllSAT~~~- 318 (779)
+..+..+.+.+. -...++||||=+-+... ..-...+..++.... +.-.++.+|||...
T Consensus 285 ------------~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~ 347 (432)
T PRK12724 285 ------------VKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYH 347 (432)
T ss_pred ------------hHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHH
Confidence 111223334332 24578999997655421 112234444454432 33467889999876
Q ss_pred HHHHHHHHh
Q psy17912 319 EVQKLAEDF 327 (779)
Q Consensus 319 ~v~~l~~~~ 327 (779)
.+...+..|
T Consensus 348 ~~~~~~~~f 356 (432)
T PRK12724 348 HTLTVLKAY 356 (432)
T ss_pred HHHHHHHHh
Confidence 555555544
No 399
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.13 E-value=0.76 Score=55.89 Aligned_cols=40 Identities=18% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecc
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSAT 315 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT 315 (779)
.+..++||||||+|....+ ..+.+++..-+....+|+. +|
T Consensus 118 gk~KViIIDEAh~LT~eAq-NALLKtLEEPP~~vrFILa-TT 157 (944)
T PRK14949 118 GRFKVYLIDEVHMLSRSSF-NALLKTLEEPPEHVKFLLA-TT 157 (944)
T ss_pred CCcEEEEEechHhcCHHHH-HHHHHHHhccCCCeEEEEE-CC
Confidence 4678999999999864322 3445555544444445544 44
No 400
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=93.12 E-value=0.68 Score=44.88 Aligned_cols=53 Identities=19% Similarity=0.310 Sum_probs=40.4
Q ss_pred CCCeeEEEEccchhhhcCCc--hHHHHHHHhhcCCCCceEEeeccccHHHHHHHH
Q psy17912 273 LHRTSYLVLDEADRMLDMGF--EPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAE 325 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f--~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~ 325 (779)
...+++||+||+=..+..++ ...+..+++..++..-+|+.+-.+|+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 45789999999998777774 456777777777777788877888888766553
No 401
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.09 E-value=0.27 Score=53.49 Aligned_cols=67 Identities=27% Similarity=0.308 Sum_probs=42.8
Q ss_pred HHHHHHHcCCCCCCHHHHHHHHHH-hcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHH
Q psy17912 139 IMKKIYEMGFQAPTAIQAQGWPIA-LSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTREL 213 (779)
Q Consensus 139 l~~~l~~~g~~~p~~~Q~~~i~~i-l~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~L 213 (779)
-++.+.+.|+ +++.|.+.+..+ ..+++++++|+|||||| +++..++..+...+ ...+++++-.+.+|
T Consensus 123 tl~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~~-----~~~rivtIEd~~El 190 (319)
T PRK13894 123 TLDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEMVIQD-----PTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhhhhcC-----CCceEEEEcCCCcc
Confidence 3445544454 567787877654 56789999999999999 44444444432211 12367777777766
No 402
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.00 E-value=0.35 Score=55.26 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=17.9
Q ss_pred CCCEEEEccCCCChhHHHHHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAI 187 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l 187 (779)
++.+.++||||+|||++....+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~ 278 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAA 278 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHH
Confidence 45688999999999987655443
No 403
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=92.99 E-value=0.73 Score=43.80 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=31.7
Q ss_pred EEcCCCCHHHHHHHHHHHhcCC-CcEEEEecccccccccCcc
Q psy17912 404 AIHGNKSQQERDRVLNEFRIGR-ASILVSQYNKSQQERDRVL 444 (779)
Q Consensus 404 ~ihg~~~~~eR~~il~~F~~G~-~~ILVAT~v~~~GIDip~v 444 (779)
.+.-+.+..+...+++.|+... ..||++|..+.+|||+|+-
T Consensus 26 i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~ 67 (141)
T smart00492 26 LLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGD 67 (141)
T ss_pred EEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCC
Confidence 3444556667888999998654 3799999889999999874
No 404
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=92.97 E-value=1.2 Score=44.36 Aligned_cols=91 Identities=19% Similarity=0.135 Sum_probs=52.1
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQV 245 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~ 245 (779)
+=-++++|+.||||...+.-+-.+... +.++++..|...- ++ +...+.-.-|.+
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~--------g~~v~vfkp~iD~---------R~----~~~~V~Sr~G~~----- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEA--------GMKVLVFKPAIDT---------RY----GVGKVSSRIGLS----- 58 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHc--------CCeEEEEeccccc---------cc----ccceeeeccCCc-----
Confidence 345789999999997544433333222 4578888885321 11 111111111111
Q ss_pred HHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhh
Q psy17912 246 KALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRML 288 (779)
Q Consensus 246 ~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~ 288 (779)
..-++|-.+..+.+.+....... .++.|.||||+.+.
T Consensus 59 -----~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~ 95 (201)
T COG1435 59 -----SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFD 95 (201)
T ss_pred -----ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCC
Confidence 13466777777888776533222 28899999999743
No 405
>PRK11054 helD DNA helicase IV; Provisional
Probab=92.96 E-value=0.41 Score=57.50 Aligned_cols=107 Identities=22% Similarity=0.171 Sum_probs=68.6
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
..+++-|.+++-. ...+++|.|..|||||.+..--+...+.... ..+..+|+++.|+..|..+.+.+......
T Consensus 195 ~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~----~~~~~IL~ltft~~AA~em~eRL~~~lg~- 267 (684)
T PRK11054 195 SPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQ----AQPEQILLLAFGRQAAEEMDERIRERLGT- 267 (684)
T ss_pred CCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCC----CCHHHeEEEeccHHHHHHHHHHHHHhcCC-
Confidence 4689999999854 3346899999999999776554433333211 12347999999999999888877665310
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHH-HHHcCCcCCCCeeEEEEccch
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLID-YLEQGTINLHRTSYLVLDEAD 285 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~-~l~~~~~~l~~i~~lViDEaH 285 (779)
.+|-|.|...|.. .+.........+..+..|+..
T Consensus 268 -----------------------~~v~v~TFHSlal~Il~~~~~~~p~~s~~~~d~~~ 302 (684)
T PRK11054 268 -----------------------EDITARTFHALALHIIQQGSKKVPVISKLENDSKA 302 (684)
T ss_pred -----------------------CCcEEEeHHHHHHHHHHHhhhcCCCcCccccchHH
Confidence 2577888887764 333322222334445566543
No 406
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.94 E-value=0.79 Score=53.37 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=25.3
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
.....++||||||+|....+ ..+.+.+...++...+|+.|
T Consensus 117 ~g~~kViIIDEa~~ls~~a~-naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSF-NALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred cCCcEEEEEechhhccHHHH-HHHHHHHhcCCCCceEEEEE
Confidence 34678999999999775423 34555555544455555544
No 407
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=92.90 E-value=0.48 Score=52.77 Aligned_cols=47 Identities=15% Similarity=0.245 Sum_probs=33.4
Q ss_pred CeeEEEEccchhhhcC-CchHHHHHHHhhcCC-CCceEEeeccccHHHH
Q psy17912 275 RTSYLVLDEADRMLDM-GFEPQIRKIIGQIRP-DRQVLMWSATWPKEVQ 321 (779)
Q Consensus 275 ~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~-~~qilllSAT~~~~v~ 321 (779)
++++++||.++.+... .....+-.++..+.. ..|+++.|...|.++.
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~ 223 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELN 223 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhc
Confidence 6889999999987765 355566666666654 3477777777777654
No 408
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=92.89 E-value=1.1 Score=54.07 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=13.8
Q ss_pred EEEEccCCCChhHHHHH
Q psy17912 168 LVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 168 vii~apTGsGKTl~~~l 184 (779)
++|.|+||+|||++.-.
T Consensus 784 LYIyG~PGTGKTATVK~ 800 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS 800 (1164)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45999999999977544
No 409
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.88 E-value=1.1 Score=52.96 Aligned_cols=20 Identities=25% Similarity=0.130 Sum_probs=15.7
Q ss_pred CEEEEccCCCChhHHHHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~ 186 (779)
..|++||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~G~GKTtlA~~lA 59 (585)
T PRK14950 40 AYLFTGPRGVGKTSTARILA 59 (585)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46899999999997655443
No 410
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.88 E-value=1 Score=46.36 Aligned_cols=52 Identities=23% Similarity=0.289 Sum_probs=31.2
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
.|..+++.+++|+|||......+...+.. +..++++.- .+...++.+.++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~--------g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRD--------GDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEEc-cCCHHHHHHHHHHh
Confidence 46789999999999996554444433322 335666664 33344554444444
No 411
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=92.86 E-value=0.66 Score=50.62 Aligned_cols=36 Identities=19% Similarity=0.099 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHhcC--C---CEEEEccCCCChhHHHHHHHH
Q psy17912 152 TAIQAQGWPIALSG--C---DLVAIAKTGSGKTLGYIAPAI 187 (779)
Q Consensus 152 ~~~Q~~~i~~il~g--~---dvii~apTGsGKTl~~~lp~l 187 (779)
+|+|+..|..+.+. + ..++.||.|.|||..+...+-
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~ 43 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQ 43 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHH
Confidence 68888888877632 2 588999999999976554443
No 412
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=92.86 E-value=0.43 Score=50.81 Aligned_cols=121 Identities=12% Similarity=0.155 Sum_probs=60.8
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQV 245 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~ 245 (779)
.+++++|+|+-|||.+.--..-.|.... ......-|.+++-+|...-....+..+-.. ++... ........
T Consensus 62 p~lLivG~snnGKT~Ii~rF~~~hp~~~-d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~---lgaP~----~~~~~~~~- 132 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTMIIERFRRLHPPQS-DEDAERIPVVYVQMPPEPDERRFYSAILEA---LGAPY----RPRDRVAK- 132 (302)
T ss_pred CceEEecCCCCcHHHHHHHHHHHCCCCC-CCCCccccEEEEecCCCCChHHHHHHHHHH---hCccc----CCCCCHHH-
Confidence 4899999999999965432222221111 111112377788888776555555443222 12211 00110000
Q ss_pred HHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCch--HHHHHHHhhcCCC--CceEEe
Q psy17912 246 KALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFE--PQIRKIIGQIRPD--RQVLMW 312 (779)
Q Consensus 246 ~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~--~~l~~il~~l~~~--~qilll 312 (779)
+. ...+.++. --.+.+|||||+|.++..... ..+...++.+... ..+|++
T Consensus 133 --~~----------~~~~~llr-----~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 133 --LE----------QQVLRLLR-----RLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred --HH----------HHHHHHHH-----HcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 00 01122332 235789999999998776533 2344445555444 445544
No 413
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.86 E-value=0.61 Score=53.45 Aligned_cols=91 Identities=22% Similarity=0.159 Sum_probs=56.5
Q ss_pred CCCHH-HHHHHHHcCCCCCC----HHHHHHHHHHh--cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEE
Q psy17912 134 NFPPY-IMKKIYEMGFQAPT----AIQAQGWPIAL--SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLV 206 (779)
Q Consensus 134 ~l~~~-l~~~l~~~g~~~p~----~~Q~~~i~~il--~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLi 206 (779)
+..++ +...|.+..-.+++ .+|.+-=..|. .++-+||+|..|||||.+++--+.-.+...+... .+..|||
T Consensus 188 ~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l--~~k~vlv 265 (747)
T COG3973 188 GGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPL--QAKPVLV 265 (747)
T ss_pred chHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhcccccc--ccCceEE
Confidence 34444 44556654333443 23544444444 4556999999999999887654443444333222 2223999
Q ss_pred EccCHHHHHHHHHHHHHhcc
Q psy17912 207 LAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 207 l~Ptr~La~Q~~~~~~~~~~ 226 (779)
+.|.+.++.-+..++-+++.
T Consensus 266 l~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 266 LGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EcCcHHHHHHHHHhchhhcc
Confidence 99999999988887777754
No 414
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=92.82 E-value=0.65 Score=50.31 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=25.3
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
.....+|||||||.|... -...+.+.+..-+.+..+++.+
T Consensus 107 ~~~~kviiidead~mt~~-A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEADKLTED-AANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHHHHhHH-HHHHHHHHhccCCCCeEEEEEc
Confidence 357889999999987752 3345555555544444444444
No 415
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.81 E-value=1.4 Score=49.66 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=16.2
Q ss_pred CEEEEccCCCChhHHHHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~ 186 (779)
.+|++||.|+|||.++.+.+
T Consensus 40 a~lf~Gp~G~GKtt~A~~~a 59 (397)
T PRK14955 40 GYIFSGLRGVGKTTAARVFA 59 (397)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999997765543
No 416
>CHL00181 cbbX CbbX; Provisional
Probab=92.78 E-value=1.1 Score=48.04 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.7
Q ss_pred CCCEEEEccCCCChhHHHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAP 185 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp 185 (779)
+.++++.||+|+|||.++...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 456899999999999765443
No 417
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.75 E-value=0.23 Score=59.70 Aligned_cols=70 Identities=14% Similarity=0.033 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
.+++-|.+++... ...++|.|..|||||.+...-+...+.... ....++|+|+.|+..|..+.+.+.+..
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~----v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 4789999998653 457889999999999876555554443311 112369999999999999988887653
No 418
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=92.73 E-value=2.5 Score=41.26 Aligned_cols=55 Identities=22% Similarity=0.355 Sum_probs=32.8
Q ss_pred CCeeEEEEccchhhh-cCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhc
Q psy17912 274 HRTSYLVLDEADRML-DMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFL 328 (779)
Q Consensus 274 ~~i~~lViDEaH~l~-~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l 328 (779)
...+++|+|....+. +......+..+.....++.-++.++|+.+.+..+.+..+.
T Consensus 81 ~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~~ 136 (173)
T cd03115 81 ENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFN 136 (173)
T ss_pred CCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHH
Confidence 356789999988643 2223334444444444666777788876666555555553
No 419
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.69 E-value=0.75 Score=50.42 Aligned_cols=36 Identities=19% Similarity=0.108 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHhc--C---CCEEEEccCCCChhHHHHHHHH
Q psy17912 152 TAIQAQGWPIALS--G---CDLVAIAKTGSGKTLGYIAPAI 187 (779)
Q Consensus 152 ~~~Q~~~i~~il~--g---~dvii~apTGsGKTl~~~lp~l 187 (779)
+|+|...+..+.+ + +-.++.||.|.||+..+...+-
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~ 43 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQ 43 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHH
Confidence 6778888877663 2 3588999999999976654443
No 420
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=92.67 E-value=1.6 Score=55.53 Aligned_cols=57 Identities=16% Similarity=0.251 Sum_probs=49.7
Q ss_pred ceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 555 RASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
..+|+|.++++.++++...|+..+++.+.|+..||+.+++||++|+..+. + ..|+||
T Consensus 280 GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~~-~-rkIVLA 336 (1283)
T TIGR01967 280 GDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPHS-G-RRIVLA 336 (1283)
T ss_pred CCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCCC-C-ceEEEe
Confidence 46999999999999999999999998888888899999999999988762 2 456665
No 421
>PRK13342 recombination factor protein RarA; Reviewed
Probab=92.65 E-value=0.64 Score=52.59 Aligned_cols=18 Identities=22% Similarity=0.254 Sum_probs=14.9
Q ss_pred CCEEEEccCCCChhHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~ 183 (779)
.++++.||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 379999999999996543
No 422
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.64 E-value=1.8 Score=42.60 Aligned_cols=53 Identities=17% Similarity=0.318 Sum_probs=40.3
Q ss_pred CCCeeEEEEccchhhhcCCc--hHHHHHHHhhcCCCCceEEeeccccHHHHHHHH
Q psy17912 273 LHRTSYLVLDEADRMLDMGF--EPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAE 325 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f--~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~ 325 (779)
-..+++||+||+=..++.++ ...+..+++.-++..-+|+..-.+|+++.+.+.
T Consensus 95 ~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 95 DPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred cCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 35789999999998888775 346777777777777777777778887766554
No 423
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.58 E-value=1.3 Score=49.07 Aligned_cols=41 Identities=17% Similarity=0.126 Sum_probs=24.6
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeec
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSA 314 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSA 314 (779)
.....+|||||+|.|... -...+.+.+..-++...+|++|.
T Consensus 139 ~~~~kVviIDead~m~~~-aanaLLK~LEepp~~~~~IL~t~ 179 (365)
T PRK07471 139 EGGWRVVIVDTADEMNAN-AANALLKVLEEPPARSLFLLVSH 179 (365)
T ss_pred cCCCEEEEEechHhcCHH-HHHHHHHHHhcCCCCeEEEEEEC
Confidence 456789999999987543 23355555555433444444443
No 424
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=92.57 E-value=0.25 Score=52.29 Aligned_cols=119 Identities=12% Similarity=0.022 Sum_probs=56.2
Q ss_pred HhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCC
Q psy17912 162 ALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPK 241 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~ 241 (779)
+..|..+++.|++|+|||...+..+...+.. .+..++++.-- +-..++...+........+..... .....
T Consensus 27 ~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~-------~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~-~~~~~ 97 (271)
T cd01122 27 LRKGELIILTAGTGVGKTTFLREYALDLITQ-------HGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDT-VFIYT 97 (271)
T ss_pred EcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh-------cCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCc-ccccc
Confidence 4467789999999999996544433333322 14467777642 223344444433221111111000 00011
Q ss_pred hhhH----HHhhcCCeEE-E-----eChHHHHHHHHcCCcCCCCeeEEEEccchhhhcC
Q psy17912 242 GPQV----KALQTGAEIV-I-----ATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDM 290 (779)
Q Consensus 242 ~~~~----~~l~~~~~Ii-V-----~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~ 290 (779)
.+.. ..+.....+. + .|++.+...+..-. .-..+++||||..+.+...
T Consensus 98 ~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~-~~~~~~~vvID~l~~l~~~ 155 (271)
T cd01122 98 LEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMA-VSHGIQHIIIDNLSIMVSD 155 (271)
T ss_pred HHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHH-hcCCceEEEECCHHHHhcc
Confidence 1111 1111112222 2 15555655553211 1236789999999987643
No 425
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.50 E-value=0.41 Score=51.58 Aligned_cols=67 Identities=27% Similarity=0.318 Sum_probs=41.2
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHH-hcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHH
Q psy17912 140 MKKIYEMGFQAPTAIQAQGWPIA-LSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELA 214 (779)
Q Consensus 140 ~~~l~~~g~~~p~~~Q~~~i~~i-l~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La 214 (779)
++.+.+.| .+++-|.+.+..+ ..+.+++++|+||||||.. +-.++..+.... ...+++++-.+.|+.
T Consensus 108 l~~l~~~g--~~~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~-----~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 108 LDDYVEAG--IMTAAQRDVLREAVLARKNILVVGGTGSGKTTL-ANALLAEIAKND-----PTDRVVIIEDTRELQ 175 (299)
T ss_pred HHHHHhcC--CCCHHHHHHHHHHHHcCCeEEEECCCCCCHHHH-HHHHHHHhhccC-----CCceEEEECCchhhc
Confidence 44444444 3555666666544 4567999999999999944 344444443311 123678887777763
No 426
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.49 E-value=0.61 Score=56.25 Aligned_cols=109 Identities=14% Similarity=0.100 Sum_probs=71.9
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 229 (779)
.++|-|.+++.. ...+++|.|..|||||.+...-+...+.... .....+|+|+.|+..|.++.+.+.+.....
T Consensus 1 ~Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~----~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~- 73 (664)
T TIGR01074 1 KLNPQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCG----YKARNIAAVTFTNKAAREMKERVAKTLGKG- 73 (664)
T ss_pred CCCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHhCcc-
Confidence 378899998864 3458999999999999776655555553311 123468999999999999888877653210
Q ss_pred ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC---cCCCCeeEEEEccchh
Q psy17912 230 TRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT---INLHRTSYLVLDEADR 286 (779)
Q Consensus 230 l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~---~~l~~i~~lViDEaH~ 286 (779)
....+.|.|..+|...+.+.. ..+ .-.+-|+|+.+.
T Consensus 74 --------------------~~~~v~v~TfHs~a~~il~~~~~~~g~-~~~~~il~~~~~ 112 (664)
T TIGR01074 74 --------------------EARGLTISTFHTLGLDIIKREYNALGY-KSNFSLFDETDQ 112 (664)
T ss_pred --------------------ccCCeEEEeHHHHHHHHHHHHHHHhCC-CCCCEEeCHHHH
Confidence 013688999998866543321 011 122457888874
No 427
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=92.45 E-value=0.2 Score=58.65 Aligned_cols=126 Identities=17% Similarity=0.113 Sum_probs=72.1
Q ss_pred CCCHHHHHHHHHHhcC--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHH-HHHHHhcc
Q psy17912 150 APTAIQAQGWPIALSG--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIE-TVANDFGS 226 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~-~~~~~~~~ 226 (779)
..+|+|.+.+..+... +.++++.++-+|||.+.+..+. +..... ...+|++.||..+|.+.. +.+..+..
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g-~~i~~~------P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIG-YSIDQD------PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhce-EEEEeC------CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 5689999999888765 5789999999999975443333 323322 124799999999999876 34444433
Q ss_pred cCCceEEEEeC----CCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhc
Q psy17912 227 ATATRVACVFG----GAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLD 289 (779)
Q Consensus 227 ~~~l~v~~~~g----g~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~ 289 (779)
....--..+.. ........+.+ .+..+.++.... ...+.-..+.+|++||+|....
T Consensus 89 ~sp~l~~~~~~~~~~~~~~t~~~k~f-~gg~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 89 ASPVLRRKLSPSKSRDSGNTILYKRF-PGGFLYLVGANS------PSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred hCHHHHHHhCchhhcccCCchhheec-CCCEEEEEeCCC------CcccccCCcCEEEEechhhccc
Confidence 22110011111 00011111111 244555554311 1223344678999999998753
No 428
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=92.37 E-value=0.36 Score=57.70 Aligned_cols=83 Identities=16% Similarity=0.235 Sum_probs=71.0
Q ss_pred EEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q psy17912 351 VDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK-GWAAVAIHGNKSQQERDRVLNEFRIGRASIL 429 (779)
Q Consensus 351 ~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~-g~~v~~ihg~~~~~eR~~il~~F~~G~~~IL 429 (779)
+.-+..+.|-+.+..++..... .++.+||.+|......++.+.|+.. |.++..+|+++++.+|.......++|+.+|+
T Consensus 222 l~GvTGSGKTEvYl~~i~~~L~-~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vV 300 (730)
T COG1198 222 LDGVTGSGKTEVYLEAIAKVLA-QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSGLSPGERYRVWRRARRGEARVV 300 (730)
T ss_pred EeCCCCCcHHHHHHHHHHHHHH-cCCEEEEEeccccchHHHHHHHHHHhCCChhhhcccCChHHHHHHHHHHhcCCceEE
Confidence 3345566777888888877654 4789999999999999999988764 8899999999999999999999999999999
Q ss_pred EEecc
Q psy17912 430 VSQYN 434 (779)
Q Consensus 430 VAT~v 434 (779)
|.|..
T Consensus 301 IGtRS 305 (730)
T COG1198 301 IGTRS 305 (730)
T ss_pred EEech
Confidence 99963
No 429
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=92.34 E-value=1 Score=49.09 Aligned_cols=43 Identities=14% Similarity=0.257 Sum_probs=26.6
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecccc
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWP 317 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~ 317 (779)
....+++|||+||.|... -...+.++++.=+++. +++++++-+
T Consensus 105 ~g~~KV~iI~~a~~m~~~-AaNaLLKtLEEPp~~~-~fiL~t~~~ 147 (325)
T PRK06871 105 QGGNKVVYIQGAERLTEA-AANALLKTLEEPRPNT-YFLLQADLS 147 (325)
T ss_pred cCCceEEEEechhhhCHH-HHHHHHHHhcCCCCCe-EEEEEECCh
Confidence 346789999999998754 2345666666533344 444454433
No 430
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=92.32 E-value=1.4 Score=48.87 Aligned_cols=17 Identities=35% Similarity=0.450 Sum_probs=14.8
Q ss_pred CCEEEEccCCCChhHHH
Q psy17912 166 CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~ 182 (779)
.++++.||+|+|||.+.
T Consensus 41 ~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 57999999999999654
No 431
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.31 E-value=0.8 Score=46.79 Aligned_cols=16 Identities=25% Similarity=0.229 Sum_probs=13.9
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
++|+.||+|+|||..+
T Consensus 52 h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLA 67 (233)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred eEEEECCCccchhHHH
Confidence 6999999999999543
No 432
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=92.27 E-value=0.77 Score=43.69 Aligned_cols=58 Identities=10% Similarity=0.103 Sum_probs=36.9
Q ss_pred HHHHHHHHHHhCCC---eEEEEcCCCCHHHHHHHHHHHhcCCC---cEEEEecc--cccccccCcc
Q psy17912 387 KADDITRSVRNKGW---AAVAIHGNKSQQERDRVLNEFRIGRA---SILVSQYN--KSQQERDRVL 444 (779)
Q Consensus 387 ~ae~L~~~L~~~g~---~v~~ihg~~~~~eR~~il~~F~~G~~---~ILVAT~v--~~~GIDip~v 444 (779)
..+.+++.+...+. ....+.-+....+...+++.|++..- .||+++.- +.+|||+|+-
T Consensus 3 ~m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~ 68 (142)
T smart00491 3 YLEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDD 68 (142)
T ss_pred HHHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCC
Confidence 34556666665432 12233333334455788889986443 69999987 9999999874
No 433
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.26 E-value=0.8 Score=53.02 Aligned_cols=18 Identities=22% Similarity=0.086 Sum_probs=14.8
Q ss_pred EEEEccCCCChhHHHHHH
Q psy17912 168 LVAIAKTGSGKTLGYIAP 185 (779)
Q Consensus 168 vii~apTGsGKTl~~~lp 185 (779)
++++||.|+|||.++...
T Consensus 39 ~Lf~GppGtGKTTlA~~l 56 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLI 56 (504)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 599999999999776543
No 434
>PTZ00293 thymidine kinase; Provisional
Probab=92.21 E-value=1.1 Score=45.45 Aligned_cols=39 Identities=23% Similarity=0.129 Sum_probs=25.6
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCH
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTR 211 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr 211 (779)
|+=.++.||++||||.-.+-.+..+... +.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~a--------g~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYS--------EKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHc--------CCceEEEEecc
Confidence 4456889999999995544443333322 44688888853
No 435
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=92.17 E-value=0.59 Score=48.58 Aligned_cols=53 Identities=17% Similarity=0.136 Sum_probs=36.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
.|..+++.||+|+|||...+-.+...+.. +..+++++ +.+-..++.+.+..+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~--------ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc--------CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 46789999999999997665555555432 44677777 4456667777676654
No 436
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=92.12 E-value=1.7 Score=46.55 Aligned_cols=19 Identities=21% Similarity=0.256 Sum_probs=16.0
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~ 183 (779)
+.++++.||+|+|||.++.
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4589999999999997653
No 437
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=92.06 E-value=0.55 Score=46.84 Aligned_cols=141 Identities=15% Similarity=0.119 Sum_probs=76.3
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHH-HHHHHHHHHhcccCCceEEEEeCCCCCh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELA-QQIETVANDFGSATATRVACVFGGAPKG 242 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La-~Q~~~~~~~~~~~~~l~v~~~~gg~~~~ 242 (779)
..-.+++..++|.|||.+++--++..+.. |.+|+|+.=.+--. .--...++++ .++.... +|.....
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~--------G~~V~ivQFlKg~~~~GE~~~l~~l---~~v~~~~-~g~~~~~ 88 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH--------GKKVGVVQFIKGAWSTGERNLLEFG---GGVEFHV-MGTGFTW 88 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC--------CCeEEEEEEecCCCccCHHHHHhcC---CCcEEEE-CCCCCcc
Confidence 44589999999999998887777766554 55677764332210 0001122221 1222211 1110000
Q ss_pred ---hhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCc--hHHHHHHHhhcCCCCceEEeecccc
Q psy17912 243 ---PQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGF--EPQIRKIIGQIRPDRQVLMWSATWP 317 (779)
Q Consensus 243 ---~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f--~~~l~~il~~l~~~~qilllSAT~~ 317 (779)
+..... ......++... ..+.-..+++||+||+=..++.++ ...+..++..-++..-+|+..-.+|
T Consensus 89 ~~~~~~e~~--------~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 89 ETQDRERDI--------AAAREGWEEAK-RMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred cCCCcHHHH--------HHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 000000 01111122211 112235689999999998888885 4567777777666667777777778
Q ss_pred HHHHHHHH
Q psy17912 318 KEVQKLAE 325 (779)
Q Consensus 318 ~~v~~l~~ 325 (779)
+++.+.+.
T Consensus 160 ~~Lie~AD 167 (191)
T PRK05986 160 RELIEAAD 167 (191)
T ss_pred HHHHHhCc
Confidence 87766554
No 438
>KOG0701|consensus
Probab=92.00 E-value=0.12 Score=65.71 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=78.8
Q ss_pred cEEEEecchhHHHHHHHHHHhC-CCeEEEEcCCCC-----------HHHHHHHHHHHhcCCCcEEEEecccccccccCcc
Q psy17912 377 KTIIFVETKRKADDITRSVRNK-GWAAVAIHGNKS-----------QQERDRVLNEFRIGRASILVSQYNKSQQERDRVL 444 (779)
Q Consensus 377 kvLVF~~s~~~ae~L~~~L~~~-g~~v~~ihg~~~-----------~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v 444 (779)
..++||+.+..+..+.+.++.. .+.+..+.|.+. .-.+.+++..|...++++|++|.++++|+|++.+
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~ 373 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKC 373 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhh
Confidence 4699999999999999988864 233444555432 2347889999999999999999999999999999
Q ss_pred cccccccceeEEEEcCCCCCHHHHHHHhccCCCCC
Q psy17912 445 NEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 445 ~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g 479 (779)
+ .|+.++.|.....|+|..||+-+..
T Consensus 374 ~---------~~~~~~~~~~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 374 N---------LVVLFDAPTYYRSYVQKKGRARAAD 399 (1606)
T ss_pred h---------hheeccCcchHHHHHHhhcccccch
Confidence 8 9999999999999999999998865
No 439
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.98 E-value=0.38 Score=53.32 Aligned_cols=27 Identities=26% Similarity=0.177 Sum_probs=19.6
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhc
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNS 192 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~ 192 (779)
+..++++||||||||.. +..++.++..
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHh
Confidence 44689999999999944 4555666544
No 440
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=91.93 E-value=0.8 Score=53.60 Aligned_cols=136 Identities=20% Similarity=0.179 Sum_probs=84.0
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC--CceEEEEeCCCC
Q psy17912 163 LSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT--ATRVACVFGGAP 240 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~--~l~v~~~~gg~~ 240 (779)
.+.+-.++..|==.|||.... +++..+... ..|-++++++|.+.-++.+.+++..+.+.. +-.+..+.| ..
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s-----~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~ 324 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALAT-----FRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ET 324 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHh-----CCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cE
Confidence 355678999999999997655 555544432 126689999999999999999888865532 111212222 11
Q ss_pred ChhhHHHhhcC--CeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc-CCCCceEEeecccc
Q psy17912 241 KGPQVKALQTG--AEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI-RPDRQVLMWSATWP 317 (779)
Q Consensus 241 ~~~~~~~l~~~--~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l-~~~~qilllSAT~~ 317 (779)
. .-....+ ..|.++|. -..+...=..++++|||||+.+.+. .+..++-.+ ..+.+++++|.|-+
T Consensus 325 I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~----al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 325 I---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD----AVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred E---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH----HHHHHHHHHhccCccEEEEecCCC
Confidence 0 0011122 35666642 1122334457899999999987764 334443222 23889999998865
Q ss_pred H
Q psy17912 318 K 318 (779)
Q Consensus 318 ~ 318 (779)
.
T Consensus 392 ~ 392 (738)
T PHA03368 392 G 392 (738)
T ss_pred C
Confidence 4
No 441
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.91 E-value=0.26 Score=52.30 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=18.6
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhc
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNS 192 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~ 192 (779)
-.|+++.+|||||||+.+ -.+..+.+
T Consensus 97 KSNILLiGPTGsGKTlLA--qTLAk~Ln 122 (408)
T COG1219 97 KSNILLIGPTGSGKTLLA--QTLAKILN 122 (408)
T ss_pred eccEEEECCCCCcHHHHH--HHHHHHhC
Confidence 358999999999999554 33444444
No 442
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.90 E-value=0.84 Score=54.22 Aligned_cols=21 Identities=24% Similarity=0.138 Sum_probs=16.5
Q ss_pred CCEEEEccCCCChhHHHHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~ 186 (779)
..+|+.||.|+|||..+...+
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lA 59 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILA 59 (620)
T ss_pred ceEEEECCCCCChHHHHHHHH
Confidence 467999999999997655443
No 443
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=91.88 E-value=0.37 Score=57.40 Aligned_cols=45 Identities=20% Similarity=0.323 Sum_probs=38.6
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecccc
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWP 317 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~ 317 (779)
..+.-++|+|+-|++.+...-..+..++++.+++...++.|=+-|
T Consensus 127 ~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP 171 (894)
T COG2909 127 YEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRP 171 (894)
T ss_pred hcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCC
Confidence 444569999999999998888899999999999999999987743
No 444
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=91.80 E-value=0.8 Score=55.28 Aligned_cols=40 Identities=18% Similarity=0.266 Sum_probs=24.3
Q ss_pred CeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHH
Q psy17912 275 RTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKE 319 (779)
Q Consensus 275 ~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~ 319 (779)
...+|||||+|++... ....++..+ .+.++++.+||-++.
T Consensus 109 ~~~IL~IDEIh~Ln~~----qQdaLL~~l-E~g~IiLI~aTTenp 148 (725)
T PRK13341 109 KRTILFIDEVHRFNKA----QQDALLPWV-ENGTITLIGATTENP 148 (725)
T ss_pred CceEEEEeChhhCCHH----HHHHHHHHh-cCceEEEEEecCCCh
Confidence 4568999999986532 222333333 345677888775443
No 445
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.77 E-value=0.67 Score=59.70 Aligned_cols=124 Identities=17% Similarity=0.093 Sum_probs=77.9
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 229 (779)
++|+-|.++|. ..+++++|.|..|||||.+..--++..+.... .-.++|+|+=|+..|..+.+.+.+.....-
T Consensus 1 ~~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~-----~~~~il~~tFt~~aa~e~~~ri~~~l~~~~ 73 (1232)
T TIGR02785 1 QWTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGV-----DIDRLLVVTFTNAAAREMKERIEEALQKAL 73 (1232)
T ss_pred CCCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCC-----CHhhEEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 36899999997 46889999999999999887666666555321 113589999999999888777765432110
Q ss_pred ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCC--eeEEEEccchh
Q psy17912 230 TRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHR--TSYLVLDEADR 286 (779)
Q Consensus 230 l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~--i~~lViDEaH~ 286 (779)
- .......-.+.+..-...-|+|...|...+-+.....-. ..+=|.||...
T Consensus 74 ~------~~p~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 74 Q------QEPNSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred h------cCchhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 0 000001111222222467899999887655443322212 24556898874
No 446
>PRK06620 hypothetical protein; Validated
Probab=91.73 E-value=0.31 Score=49.89 Aligned_cols=16 Identities=31% Similarity=0.293 Sum_probs=13.7
Q ss_pred CCEEEEccCCCChhHH
Q psy17912 166 CDLVAIAKTGSGKTLG 181 (779)
Q Consensus 166 ~dvii~apTGsGKTl~ 181 (779)
+.+++.||+|+|||..
T Consensus 45 ~~l~l~Gp~G~GKThL 60 (214)
T PRK06620 45 FTLLIKGPSSSGKTYL 60 (214)
T ss_pred ceEEEECCCCCCHHHH
Confidence 4589999999999944
No 447
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.73 E-value=1.9 Score=50.58 Aligned_cols=21 Identities=24% Similarity=0.020 Sum_probs=16.3
Q ss_pred CCEEEEccCCCChhHHHHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~ 186 (779)
+..|++||.|+|||..+...+
T Consensus 39 hA~Lf~GP~GvGKTTlA~~lA 59 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAKIFA 59 (605)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358899999999997655443
No 448
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=91.67 E-value=2.3 Score=48.64 Aligned_cols=56 Identities=18% Similarity=0.192 Sum_probs=53.8
Q ss_pred eEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 556 ASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
-.|+||+..|-|.++...|..-|++|..- |++-++.||..|=.+|..+.-+..||.
T Consensus 442 QtIVFT~SRrr~h~lA~~L~~kG~~a~pY---HaGL~y~eRk~vE~~F~~q~l~~VVTT 497 (830)
T COG1202 442 QTIVFTYSRRRCHELADALTGKGLKAAPY---HAGLPYKERKSVERAFAAQELAAVVTT 497 (830)
T ss_pred ceEEEecchhhHHHHHHHhhcCCcccccc---cCCCcHHHHHHHHHHHhcCCcceEeeh
Confidence 57999999999999999999999999999 999999999999999999999999985
No 449
>PRK05973 replicative DNA helicase; Provisional
Probab=91.58 E-value=2 Score=44.62 Aligned_cols=81 Identities=19% Similarity=0.168 Sum_probs=47.4
Q ss_pred CCCHHHHHHHHHcCCCC----------CCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCE
Q psy17912 134 NFPPYIMKKIYEMGFQA----------PTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPI 203 (779)
Q Consensus 134 ~l~~~l~~~l~~~g~~~----------p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 203 (779)
++...+-+...+.||.. ++|. .+...-+..|.-++|.|++|+|||...+-.+...+.. |..
T Consensus 24 ~~~~~~~~~a~~~g~~~w~~~~~~~~~~~p~-~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~--------Ge~ 94 (237)
T PRK05973 24 PLHEALDRIAAEEGFSSWSLLAAKAAATTPA-EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKS--------GRT 94 (237)
T ss_pred cHHHHHHHHHHHhccchHHHHHHhccCCCCH-HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhc--------CCe
Confidence 34444444444556543 4552 2233445567789999999999996555444444322 446
Q ss_pred EEEEccCHHHHHHHHHHHHHh
Q psy17912 204 VLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 204 vLil~Ptr~La~Q~~~~~~~~ 224 (779)
++|++-- +-..|+.+.+..+
T Consensus 95 vlyfSlE-es~~~i~~R~~s~ 114 (237)
T PRK05973 95 GVFFTLE-YTEQDVRDRLRAL 114 (237)
T ss_pred EEEEEEe-CCHHHHHHHHHHc
Confidence 7777543 3356666666665
No 450
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=91.52 E-value=0.78 Score=50.28 Aligned_cols=36 Identities=17% Similarity=0.065 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHh----cCC---CEEEEccCCCChhHHHHHHH
Q psy17912 151 PTAIQAQGWPIAL----SGC---DLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 151 p~~~Q~~~i~~il----~g~---dvii~apTGsGKTl~~~lp~ 186 (779)
++|+|+..|..+. +++ -.++.||.|.||+..+...+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A 45 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALS 45 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHH
Confidence 4677777776654 443 58899999999996654443
No 451
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=91.50 E-value=1.2 Score=46.95 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHh----cCC-CEEEEccCCCChhHHHH
Q psy17912 151 PTAIQAQGWPIAL----SGC-DLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 151 p~~~Q~~~i~~il----~g~-dvii~apTGsGKTl~~~ 183 (779)
+++.+.+++..+. .+. .+++.||+|+|||....
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 24 PSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIR 61 (269)
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 3444455554442 333 58899999999996543
No 452
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.34 E-value=1.9 Score=50.12 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=26.1
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
.....++||||||.|.... ...+.+.+...++...+++.+
T Consensus 115 ~~~~KVvIIDEad~Lt~~A-~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 115 MARFKIFIIDEVHMLTKEA-FNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cCCeEEEEEECcccCCHHH-HHHHHHHHhhcCCceEEEEEE
Confidence 4578899999999886542 234555565555555555544
No 453
>PRK10867 signal recognition particle protein; Provisional
Probab=91.32 E-value=1.2 Score=50.35 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=67.5
Q ss_pred CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc--cCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhh
Q psy17912 167 DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA--PTRELAQQIETVANDFGSATATRVACVFGGAPKGPQ 244 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~--Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~ 244 (779)
.+++++++|+|||++..-.+.. +... .+.+++++. +.|..+.. .++.++...++.+......
T Consensus 102 vI~~vG~~GsGKTTtaakLA~~-l~~~------~G~kV~lV~~D~~R~aa~e---QL~~~a~~~gv~v~~~~~~------ 165 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLAKY-LKKK------KKKKVLLVAADVYRPAAIE---QLKTLGEQIGVPVFPSGDG------ 165 (433)
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHHh------cCCcEEEEEccccchHHHH---HHHHHHhhcCCeEEecCCC------
Confidence 5789999999999776554443 2221 123444443 33443332 2333333345544322111
Q ss_pred HHHhhcCCeEEEeChHHHHH-HHHcCCcCCCCeeEEEEccchhhhc-CCchHHHHHHHhhcCCCCceEEeeccccHHHHH
Q psy17912 245 VKALQTGAEIVIATPGRLID-YLEQGTINLHRTSYLVLDEADRMLD-MGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQK 322 (779)
Q Consensus 245 ~~~l~~~~~IiV~Tpe~Ll~-~l~~~~~~l~~i~~lViDEaH~l~~-~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~ 322 (779)
..|..+.. .+.. .....+++||||=+=++.. ......+..+...+.|+--++.++|+...+...
T Consensus 166 ------------~dp~~i~~~a~~~--a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av~ 231 (433)
T PRK10867 166 ------------QDPVDIAKAALEE--AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAVN 231 (433)
T ss_pred ------------CCHHHHHHHHHHH--HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHHH
Confidence 12222221 1111 1133567888887765432 112334555555555666677788887766666
Q ss_pred HHHHhc
Q psy17912 323 LAEDFL 328 (779)
Q Consensus 323 l~~~~l 328 (779)
.++.|.
T Consensus 232 ~a~~F~ 237 (433)
T PRK10867 232 TAKAFN 237 (433)
T ss_pred HHHHHH
Confidence 666664
No 454
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.31 E-value=3.5 Score=44.80 Aligned_cols=55 Identities=24% Similarity=0.344 Sum_probs=33.2
Q ss_pred CCeeEEEEccchhhhcC-CchHHHHHHHhhc------CCCCceEEeeccccHHHHHHHHHhc
Q psy17912 274 HRTSYLVLDEADRMLDM-GFEPQIRKIIGQI------RPDRQVLMWSATWPKEVQKLAEDFL 328 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~-~f~~~l~~il~~l------~~~~qilllSAT~~~~v~~l~~~~l 328 (779)
..+++||||=+-++... .....+.++.+.+ .|+-.++.++||........+..+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 56789999988875432 2234455554432 3455688899997655444455543
No 455
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.30 E-value=1.8 Score=49.00 Aligned_cols=55 Identities=18% Similarity=0.235 Sum_probs=33.9
Q ss_pred CCeeEEEEccchhhhc-CCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhc
Q psy17912 274 HRTSYLVLDEADRMLD-MGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFL 328 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~-~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l 328 (779)
..+++||||=+-++.. ......+..+...+.++--++.+.|+...+....+..|.
T Consensus 181 ~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tgq~~~~~a~~f~ 236 (428)
T TIGR00959 181 NGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTGQDAVNTAKTFN 236 (428)
T ss_pred cCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccchHHHHHHHHHHH
Confidence 3467888887765432 112334555555555666677788887776666666654
No 456
>KOG0738|consensus
Probab=91.24 E-value=8.1 Score=42.49 Aligned_cols=16 Identities=31% Similarity=0.486 Sum_probs=14.2
Q ss_pred CCEEEEccCCCChhHH
Q psy17912 166 CDLVAIAKTGSGKTLG 181 (779)
Q Consensus 166 ~dvii~apTGsGKTl~ 181 (779)
+.++..+|+|+|||+.
T Consensus 246 kgvLm~GPPGTGKTlL 261 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLL 261 (491)
T ss_pred ceeeeeCCCCCcHHHH
Confidence 6799999999999943
No 457
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.19 E-value=2.6 Score=43.57 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=33.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
.|.-+++.|++|+|||...+..+...+.. +.+++++.--.. ..++.+.+..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~--------g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQ--------GKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhC--------CCEEEEEEcCCC-HHHHHHHHHHC
Confidence 35678999999999996655544444332 446777765433 34555556555
No 458
>KOG2028|consensus
Probab=91.16 E-value=0.54 Score=50.71 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=24.5
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccccH
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPK 318 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~ 318 (779)
.+-.++.+||+|+ |...-+.++.-.-.+--|++..||-.+
T Consensus 221 krkTilFiDEiHR-----FNksQQD~fLP~VE~G~I~lIGATTEN 260 (554)
T KOG2028|consen 221 KRKTILFIDEIHR-----FNKSQQDTFLPHVENGDITLIGATTEN 260 (554)
T ss_pred cceeEEEeHHhhh-----hhhhhhhcccceeccCceEEEecccCC
Confidence 3456899999999 443434443322234567888888543
No 459
>KOG0745|consensus
Probab=91.14 E-value=0.36 Score=53.17 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=18.1
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhc
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNS 192 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~ 192 (779)
.|+|+.+|||||||+.+ -.+..+..
T Consensus 227 SNvLllGPtGsGKTlla--qTLAr~ld 251 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLA--QTLARVLD 251 (564)
T ss_pred ccEEEECCCCCchhHHH--HHHHHHhC
Confidence 48999999999999544 33444444
No 460
>KOG0739|consensus
Probab=91.08 E-value=4.3 Score=42.92 Aligned_cols=124 Identities=18% Similarity=0.251 Sum_probs=69.2
Q ss_pred HHHhcCC-----CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEE
Q psy17912 160 PIALSGC-----DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVAC 234 (779)
Q Consensus 160 ~~il~g~-----dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~ 234 (779)
|.+..|+ .+++-+|+|+||+ |+.-++..-.. .+.+-+.+..|+..|.-+-.++.+
T Consensus 156 PqlFtGkR~PwrgiLLyGPPGTGKS--YLAKAVATEAn----------STFFSvSSSDLvSKWmGESEkLVk-------- 215 (439)
T KOG0739|consen 156 PQLFTGKRKPWRGILLYGPPGTGKS--YLAKAVATEAN----------STFFSVSSSDLVSKWMGESEKLVK-------- 215 (439)
T ss_pred hhhhcCCCCcceeEEEeCCCCCcHH--HHHHHHHhhcC----------CceEEeehHHHHHHHhccHHHHHH--------
Confidence 5666664 5999999999999 55544432111 467888888888765544333311
Q ss_pred EeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCC---chHHHHHH----Hhhc----
Q psy17912 235 VFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMG---FEPQIRKI----IGQI---- 303 (779)
Q Consensus 235 ~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~---f~~~l~~i----l~~l---- 303 (779)
.|..+-. -+..++|.|||+|.+.... -....++| +-++
T Consensus 216 --------------------------nLFemAR-----e~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG 264 (439)
T KOG0739|consen 216 --------------------------NLFEMAR-----ENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVG 264 (439)
T ss_pred --------------------------HHHHHHH-----hcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccc
Confidence 0112221 2245789999999665432 11222222 2233
Q ss_pred CCCCceEEeeccccHHHHH-HHHHhccCcEEE
Q psy17912 304 RPDRQVLMWSATWPKEVQK-LAEDFLVDYVQL 334 (779)
Q Consensus 304 ~~~~qilllSAT~~~~v~~-l~~~~l~~~~~i 334 (779)
..+--++.+.||-.+++.. .++.-+...+.+
T Consensus 265 ~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI 296 (439)
T KOG0739|consen 265 NDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI 296 (439)
T ss_pred cCCCceEEEecCCCchhHHHHHHHHhhcceec
Confidence 2345789999997665433 333333333333
No 461
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=90.84 E-value=0.64 Score=50.16 Aligned_cols=60 Identities=23% Similarity=0.102 Sum_probs=43.2
Q ss_pred CCCCCCHHHHHHHHHHhcCC-CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHH
Q psy17912 147 GFQAPTAIQAQGWPIALSGC-DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQ 215 (779)
Q Consensus 147 g~~~p~~~Q~~~i~~il~g~-dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~ 215 (779)
.|...++-|...+..+...+ |+++++.||||||.. +-++. ..-+. .-++|.+--|.||-.
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTl--LNal~---~~i~~----~eRvItiEDtaELql 214 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTL--LNALS---GFIDS----DERVITIEDTAELQL 214 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHH--HHHHH---hcCCC----cccEEEEeehhhhcc
Confidence 57789999999998888776 999999999999943 22222 21111 227888888877744
No 462
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=90.82 E-value=1.8 Score=52.74 Aligned_cols=44 Identities=14% Similarity=0.170 Sum_probs=25.8
Q ss_pred eEEEEccchhhhcCCc----hHHHHHHHhhcCCCCceEEeeccccHHH
Q psy17912 277 SYLVLDEADRMLDMGF----EPQIRKIIGQIRPDRQVLMWSATWPKEV 320 (779)
Q Consensus 277 ~~lViDEaH~l~~~~f----~~~l~~il~~l~~~~qilllSAT~~~~v 320 (779)
.+|+|||+|.+...+- ......+++..-..-.+.++.||-+++.
T Consensus 276 ~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt~~e~ 323 (731)
T TIGR02639 276 AILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTTYEEY 323 (731)
T ss_pred eEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecCHHHH
Confidence 4799999999875431 1223334433323446777777766543
No 463
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=90.73 E-value=2.5 Score=46.85 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=61.4
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhh
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQ 244 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~ 244 (779)
.+.+.+.|+.|.|||. ++-++-.....+ .+.+ ++..+.+.++++.+.++. |..+.
T Consensus 62 ~~GlYl~G~vG~GKT~--Lmd~f~~~lp~~-----~k~R----~HFh~Fm~~vh~~l~~~~-----------~~~~~--- 116 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKTM--LMDLFYDSLPIK-----RKRR----VHFHEFMLDVHSRLHQLR-----------GQDDP--- 116 (362)
T ss_pred CceEEEECCCCCchhH--HHHHHHHhCCcc-----cccc----ccccHHHHHHHHHHHHHh-----------CCCcc---
Confidence 4679999999999994 343333222211 1112 245677777777777763 11110
Q ss_pred HHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc-CCCCceEEeeccccHHH
Q psy17912 245 VKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI-RPDRQVLMWSATWPKEV 320 (779)
Q Consensus 245 ~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l-~~~~qilllSAT~~~~v 320 (779)
...+.+.+ .....+|+|||.|. .|.+=...+..++..+ ....-+|+.|-+.|.++
T Consensus 117 --------------l~~va~~l------~~~~~lLcfDEF~V-~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~L 172 (362)
T PF03969_consen 117 --------------LPQVADEL------AKESRLLCFDEFQV-TDIADAMILKRLFEALFKRGVVLVATSNRPPEDL 172 (362)
T ss_pred --------------HHHHHHHH------HhcCCEEEEeeeec-cchhHHHHHHHHHHHHHHCCCEEEecCCCChHHH
Confidence 01111222 33456999999994 2322233455555544 34667777788877764
No 464
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=90.67 E-value=0.29 Score=61.77 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=52.2
Q ss_pred ceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 555 RASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
..+|+|+++++.++++...|+..+++...|+..||+.+|+||+.|++. .|+..|+||-
T Consensus 287 GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVAT 344 (1294)
T PRK11131 287 GDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLAT 344 (1294)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cCCeeEEEec
Confidence 459999999999999999999999998888888999999999999997 4777888763
No 465
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.62 E-value=2.2 Score=47.16 Aligned_cols=43 Identities=16% Similarity=0.101 Sum_probs=26.6
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecccc
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWP 317 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~ 317 (779)
.....+|||||||.|.... ...+.++++.-++...++++| +-|
T Consensus 139 ~g~~rVviIDeAd~l~~~a-anaLLk~LEEpp~~~~fiLit-~~~ 181 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNA-ANAILKTLEEPPARALFILIS-HSS 181 (351)
T ss_pred cCCceEEEEEchhhcCHHH-HHHHHHHHhcCCCCceEEEEE-CCh
Confidence 3467899999999986442 335666666544444445554 434
No 466
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=90.57 E-value=1.4 Score=53.57 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=28.8
Q ss_pred eeEEEEccchhhhcCCc----hHHHHHHHhhcCCCCceEEeeccccHHHH
Q psy17912 276 TSYLVLDEADRMLDMGF----EPQIRKIIGQIRPDRQVLMWSATWPKEVQ 321 (779)
Q Consensus 276 i~~lViDEaH~l~~~~f----~~~l~~il~~l~~~~qilllSAT~~~~v~ 321 (779)
-.+|+|||+|.+...+- ...+..+++.+-...++.++.||-+++.+
T Consensus 279 ~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~~E~~ 328 (758)
T PRK11034 279 NSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFS 328 (758)
T ss_pred CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCChHHHH
Confidence 35899999998875442 23344455544345567777777666543
No 467
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=90.53 E-value=0.36 Score=53.32 Aligned_cols=27 Identities=26% Similarity=0.211 Sum_probs=19.4
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVN 191 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~ 191 (779)
.+..++++||||||||... ..++..+.
T Consensus 133 ~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 4567999999999999543 44454443
No 468
>KOG1596|consensus
Probab=90.53 E-value=0.37 Score=48.94 Aligned_cols=6 Identities=50% Similarity=0.695 Sum_probs=3.4
Q ss_pred CCCChh
Q psy17912 174 TGSGKT 179 (779)
Q Consensus 174 TGsGKT 179 (779)
.+||-|
T Consensus 165 AasGtt 170 (317)
T KOG1596|consen 165 AASGTT 170 (317)
T ss_pred ccCCce
Confidence 356666
No 469
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=90.49 E-value=1.7 Score=44.93 Aligned_cols=39 Identities=26% Similarity=0.201 Sum_probs=25.8
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc
Q psy17912 163 LSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA 208 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~ 208 (779)
..|.-+++.|++|+|||...+-.++..+... +..+++++
T Consensus 11 ~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~-------g~~vly~s 49 (242)
T cd00984 11 QPGDLIIIAARPSMGKTAFALNIAENIAKKQ-------GKPVLFFS 49 (242)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC-------CCceEEEe
Confidence 3567899999999999955444444433321 34677777
No 470
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.38 E-value=2.3 Score=50.37 Aligned_cols=20 Identities=25% Similarity=0.144 Sum_probs=16.3
Q ss_pred CEEEEccCCCChhHHHHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~ 186 (779)
..|++||.|+|||.++.+.+
T Consensus 40 a~Lf~Gp~GvGKttlA~~lA 59 (620)
T PRK14954 40 GYIFSGLRGVGKTTAARVFA 59 (620)
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 48899999999998765544
No 471
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=90.24 E-value=1.5 Score=47.61 Aligned_cols=38 Identities=13% Similarity=-0.013 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHh----cCC---CEEEEccCCCChhHHHHHHHH
Q psy17912 150 APTAIQAQGWPIAL----SGC---DLVAIAKTGSGKTLGYIAPAI 187 (779)
Q Consensus 150 ~p~~~Q~~~i~~il----~g~---dvii~apTGsGKTl~~~lp~l 187 (779)
.++|+|...+..+. +++ -.++.||.|.||+..+...+-
T Consensus 3 ~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~ 47 (319)
T PRK06090 3 NDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSR 47 (319)
T ss_pred cCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHH
Confidence 45677777776654 443 589999999999966544443
No 472
>KOG1133|consensus
Probab=90.15 E-value=0.41 Score=55.50 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHH----hcCCCEEEEccCCCChhHHHHHHHHHHHhc
Q psy17912 150 APTAIQAQGWPIA----LSGCDLVAIAKTGSGKTLGYIAPAIVHVNS 192 (779)
Q Consensus 150 ~p~~~Q~~~i~~i----l~g~dvii~apTGsGKTl~~~lp~l~~l~~ 192 (779)
+|+.+|.+.+..+ -.|+-.|+.+|||+|||+..+-.++.++..
T Consensus 15 ~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL~~ 61 (821)
T KOG1133|consen 15 TPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWLRD 61 (821)
T ss_pred CchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHHHH
Confidence 6788888877654 488999999999999999988888877654
No 473
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=89.77 E-value=2.9 Score=45.16 Aligned_cols=38 Identities=16% Similarity=0.283 Sum_probs=23.7
Q ss_pred CeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 275 RTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 275 ~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
...+|||||+|.+... ....+..++...++...+|+.+
T Consensus 102 ~~~vviiDe~~~l~~~-~~~~L~~~le~~~~~~~lIl~~ 139 (319)
T PRK00440 102 PFKIIFLDEADNLTSD-AQQALRRTMEMYSQNTRFILSC 139 (319)
T ss_pred CceEEEEeCcccCCHH-HHHHHHHHHhcCCCCCeEEEEe
Confidence 4679999999987543 2334555555555555555544
No 474
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=89.72 E-value=0.43 Score=52.40 Aligned_cols=45 Identities=22% Similarity=0.239 Sum_probs=29.4
Q ss_pred HHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHH
Q psy17912 161 IALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELA 214 (779)
Q Consensus 161 ~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La 214 (779)
++..+.+++++||||||||.. +-.++..+.. ..+++.+-.+.||.
T Consensus 158 ~v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~--------~~rivtiEd~~El~ 202 (344)
T PRK13851 158 CVVGRLTMLLCGPTGSGKTTM-SKTLISAIPP--------QERLITIEDTLELV 202 (344)
T ss_pred HHHcCCeEEEECCCCccHHHH-HHHHHcccCC--------CCCEEEECCCcccc
Confidence 445778999999999999943 3333333221 23567777777663
No 475
>PRK11823 DNA repair protein RadA; Provisional
Probab=89.66 E-value=2.4 Score=48.48 Aligned_cols=92 Identities=20% Similarity=0.279 Sum_probs=51.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGP 243 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~ 243 (779)
.|.-+++.+++|+|||...+..+.... . .+.+++|+.- .+...|+...+.++..... + ..+...
T Consensus 79 ~Gs~~lI~G~pG~GKTtL~lq~a~~~a-~-------~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~-~-l~~~~e----- 142 (446)
T PRK11823 79 PGSVVLIGGDPGIGKSTLLLQVAARLA-A-------AGGKVLYVSG-EESASQIKLRAERLGLPSD-N-LYLLAE----- 142 (446)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-h-------cCCeEEEEEc-cccHHHHHHHHHHcCCChh-c-EEEeCC-----
Confidence 356789999999999965444333322 2 1346888874 3445666666655532111 0 111100
Q ss_pred hHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhc
Q psy17912 244 QVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLD 289 (779)
Q Consensus 244 ~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~ 289 (779)
...+.+.+.+.. .+.++||||+++.+..
T Consensus 143 -------------~~l~~i~~~i~~-----~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 143 -------------TNLEAILATIEE-----EKPDLVVIDSIQTMYS 170 (446)
T ss_pred -------------CCHHHHHHHHHh-----hCCCEEEEechhhhcc
Confidence 122344444432 3567999999997654
No 476
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=89.60 E-value=6.4 Score=46.30 Aligned_cols=43 Identities=21% Similarity=0.299 Sum_probs=24.2
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecccc
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWP 317 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~ 317 (779)
.....++||||+|.+....+ ..+.+.+... |..-++++.+|-+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~-naLLK~LEep-p~~~vfI~~tte~ 159 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAF-NALLKTIEEP-PPYIVFIFATTEV 159 (563)
T ss_pred cCCCEEEEEEChhhcCHHHH-HHHHHhhccC-CCCEEEEEecCCh
Confidence 45678999999998865322 2333444432 3334444444533
No 477
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=89.41 E-value=0.93 Score=49.62 Aligned_cols=44 Identities=18% Similarity=0.320 Sum_probs=28.0
Q ss_pred HHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHH
Q psy17912 161 IALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTREL 213 (779)
Q Consensus 161 ~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~L 213 (779)
++..+.+++++|+||||||. ++-.++..+.. ..+++.+=-+.||
T Consensus 156 ~v~~~~nili~G~tgSGKTT-ll~aL~~~ip~--------~~ri~tiEd~~El 199 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKTT-FTNAALREIPA--------IERLITVEDAREI 199 (332)
T ss_pred HHHcCCcEEEECCCCCCHHH-HHHHHHhhCCC--------CCeEEEecCCCcc
Confidence 34467899999999999994 33444443322 2356666555554
No 478
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.37 E-value=2.5 Score=50.26 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=25.9
Q ss_pred CCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccc
Q psy17912 272 NLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 272 ~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~ 316 (779)
.+....++||||||.|.... ...+.+.+...+ ..-++++.+|-
T Consensus 118 ~~~~~KVvIIdea~~Ls~~a-~naLLK~LEepp-~~tifIL~tt~ 160 (614)
T PRK14971 118 QIGKYKIYIIDEVHMLSQAA-FNAFLKTLEEPP-SYAIFILATTE 160 (614)
T ss_pred ccCCcEEEEEECcccCCHHH-HHHHHHHHhCCC-CCeEEEEEeCC
Confidence 35578899999999986532 224555555433 33445555553
No 479
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=89.33 E-value=3.4 Score=47.29 Aligned_cols=20 Identities=25% Similarity=0.061 Sum_probs=15.8
Q ss_pred CEEEEccCCCChhHHHHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~ 186 (779)
..|+.||.|+|||.++...+
T Consensus 41 a~Lf~Gp~G~GKtt~A~~lA 60 (451)
T PRK06305 41 AYLFSGIRGTGKTTLARIFA 60 (451)
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 57899999999997655443
No 480
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=89.28 E-value=3.3 Score=41.16 Aligned_cols=41 Identities=12% Similarity=0.285 Sum_probs=23.6
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecc
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSAT 315 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT 315 (779)
.....+|||||+|.+... ....+.+.+...++.. ++++.++
T Consensus 94 ~~~~kviiide~~~l~~~-~~~~Ll~~le~~~~~~-~~il~~~ 134 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA-AANALLKTLEEPPPNT-LFILITP 134 (188)
T ss_pred cCCeEEEEEechhhhCHH-HHHHHHHHhcCCCCCe-EEEEEEC
Confidence 456789999999997643 1233444444433333 3444444
No 481
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=89.27 E-value=2.1 Score=45.16 Aligned_cols=38 Identities=18% Similarity=0.161 Sum_probs=25.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEcc
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAP 209 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~P 209 (779)
.|.-+++.|++|+|||...+..+...+.. +.+++|++-
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~--------Ge~vlyis~ 72 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASR--------GNPVLFVTV 72 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhC--------CCcEEEEEe
Confidence 46779999999999996554444443322 446777773
No 482
>PRK10865 protein disaggregation chaperone; Provisional
Probab=89.15 E-value=1.6 Score=54.09 Aligned_cols=47 Identities=17% Similarity=0.151 Sum_probs=28.1
Q ss_pred eeEEEEccchhhhcCC---chHHHHHHHhhcCCCCceEEeeccccHHHHH
Q psy17912 276 TSYLVLDEADRMLDMG---FEPQIRKIIGQIRPDRQVLMWSATWPKEVQK 322 (779)
Q Consensus 276 i~~lViDEaH~l~~~~---f~~~l~~il~~l~~~~qilllSAT~~~~v~~ 322 (779)
-.+|+|||+|.+...+ -......+++..-..-.+.+..||-+++.+.
T Consensus 272 ~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt~~e~r~ 321 (857)
T PRK10865 272 NVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQ 321 (857)
T ss_pred CeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCCCHHHHH
Confidence 3589999999987543 1122344444333344667777776666543
No 483
>KOG0734|consensus
Probab=89.10 E-value=3.4 Score=47.02 Aligned_cols=47 Identities=13% Similarity=0.311 Sum_probs=29.3
Q ss_pred CCeeEEEEccchhhhcCC-------chHHHHHHHhhc---CCCCceEEeeccc-cHHH
Q psy17912 274 HRTSYLVLDEADRMLDMG-------FEPQIRKIIGQI---RPDRQVLMWSATW-PKEV 320 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~-------f~~~l~~il~~l---~~~~qilllSAT~-~~~v 320 (779)
...++|.|||+|.+...- ....+..++..+ .++--+|.+.||- |..+
T Consensus 395 ~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~L 452 (752)
T KOG0734|consen 395 RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEAL 452 (752)
T ss_pred cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhh
Confidence 346789999999876542 112233444333 4566899999994 4443
No 484
>KOG0991|consensus
Probab=89.08 E-value=1.3 Score=45.11 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=24.2
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEe
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMW 312 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilll 312 (779)
-+.+.||+||||.|.+- -...+++.+....+..++.+.
T Consensus 112 grhKIiILDEADSMT~g-AQQAlRRtMEiyS~ttRFala 149 (333)
T KOG0991|consen 112 GRHKIIILDEADSMTAG-AQQALRRTMEIYSNTTRFALA 149 (333)
T ss_pred CceeEEEeeccchhhhH-HHHHHHHHHHHHcccchhhhh
Confidence 56789999999987653 344556665555444444443
No 485
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.01 E-value=0.61 Score=52.82 Aligned_cols=40 Identities=25% Similarity=0.295 Sum_probs=29.3
Q ss_pred CHHHHHHHHHHhcCCC--EEEEccCCCChhHHHHHHHHHHHhc
Q psy17912 152 TAIQAQGWPIALSGCD--LVAIAKTGSGKTLGYIAPAIVHVNS 192 (779)
Q Consensus 152 ~~~Q~~~i~~il~g~d--vii~apTGsGKTl~~~lp~l~~l~~ 192 (779)
++.|.+.+..+++... +++.||||||||. .+..++..+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTT-TLY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTT-TLYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHH-HHHHHHHHhcC
Confidence 7778888877776554 7789999999994 45555655544
No 486
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=88.94 E-value=1.7 Score=53.89 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=28.2
Q ss_pred CeeEEEEccchhhhcCCch---HHHHHHHhhcCCCCceEEeeccccHHHHH
Q psy17912 275 RTSYLVLDEADRMLDMGFE---PQIRKIIGQIRPDRQVLMWSATWPKEVQK 322 (779)
Q Consensus 275 ~i~~lViDEaH~l~~~~f~---~~l~~il~~l~~~~qilllSAT~~~~v~~ 322 (779)
.-.+|+|||+|.+...+-. .....+++..-....+.++.||-+++.+.
T Consensus 266 ~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaTt~~e~r~ 316 (852)
T TIGR03346 266 GQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGATTLDEYRK 316 (852)
T ss_pred CCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeCcHHHHHH
Confidence 3469999999998753311 12334444333344566777776666544
No 487
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.79 E-value=1 Score=49.53 Aligned_cols=43 Identities=21% Similarity=0.252 Sum_probs=25.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTREL 213 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~L 213 (779)
.+..++++||||||||... ..++..+... .+.+++.+--..++
T Consensus 121 ~~g~ili~G~tGSGKTT~l-~al~~~i~~~------~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTL-ASMIDYINKN------AAGHIITIEDPIEY 163 (343)
T ss_pred cCcEEEEECCCCCCHHHHH-HHHHHhhCcC------CCCEEEEEcCChhh
Confidence 3567999999999999553 3344443321 12356665554444
No 488
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=88.60 E-value=2.2 Score=47.39 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=50.5
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGP 243 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~ 243 (779)
.|.-+++.+++|+|||...+..+.. +.. .+.+++|+.-. +...|+...+.++.... .-..+...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~-~a~-------~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~--~~l~l~~e----- 144 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAAR-LAK-------RGGKVLYVSGE-ESPEQIKLRADRLGIST--ENLYLLAE----- 144 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH-HHh-------cCCeEEEEECC-cCHHHHHHHHHHcCCCc--ccEEEEcc-----
Confidence 4567899999999999654443333 222 13467887654 33456555555543211 00011100
Q ss_pred hHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhh
Q psy17912 244 QVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRML 288 (779)
Q Consensus 244 ~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~ 288 (779)
...+.+.+.+.. .+.++||||+++.+.
T Consensus 145 -------------~~le~I~~~i~~-----~~~~lVVIDSIq~l~ 171 (372)
T cd01121 145 -------------TNLEDILASIEE-----LKPDLVIIDSIQTVY 171 (372)
T ss_pred -------------CcHHHHHHHHHh-----cCCcEEEEcchHHhh
Confidence 123444444432 357899999999775
No 489
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.60 E-value=5.4 Score=46.08 Aligned_cols=41 Identities=17% Similarity=0.317 Sum_probs=23.4
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecc
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSAT 315 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT 315 (779)
.....++||||||.+....+ ..+.+.+...++. .++++.+|
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~-naLLk~LEepp~~-~v~Il~tt 157 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAF-NALLKTLEEPPPR-TIFILCTT 157 (486)
T ss_pred cCCeeEEEEEChhhcCHHHH-HHHHHHHhcCCCC-eEEEEEEC
Confidence 45678999999998764333 2344444443333 34444444
No 490
>PRK04328 hypothetical protein; Provisional
Probab=88.51 E-value=3 Score=43.66 Aligned_cols=53 Identities=17% Similarity=0.134 Sum_probs=34.5
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
.|..+++.+++|+|||...+..+...+.. +..+++++ +.+-..++.+.++.+.
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~--------ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQM--------GEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhc--------CCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 46789999999999996555444444433 33566766 4445556666666664
No 491
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=88.47 E-value=0.54 Score=49.79 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=28.2
Q ss_pred hcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHH
Q psy17912 163 LSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTREL 213 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~L 213 (779)
..+.+++++|+||||||... ..++..+... ..+++++-.+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~-------~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE-------DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT-------TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc-------ccceEEeccccce
Confidence 45779999999999999543 4444443331 2467777766665
No 492
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=88.41 E-value=3.9 Score=40.23 Aligned_cols=53 Identities=17% Similarity=0.295 Sum_probs=34.4
Q ss_pred CCCeeEEEEccchhhhcCCch--HHHHHHHhhcCCCCceEEeeccccHHHHHHHH
Q psy17912 273 LHRTSYLVLDEADRMLDMGFE--PQIRKIIGQIRPDRQVLMWSATWPKEVQKLAE 325 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~--~~l~~il~~l~~~~qilllSAT~~~~v~~l~~ 325 (779)
-..+++||+||+=..++.++. ..+..++..-++..-+|+..-.+|+++.+.+.
T Consensus 94 ~~~~dlvILDEi~~a~~~gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 94 SGEYDLVILDEINYAVDYGLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -TT-SEEEEETHHHHHHTTSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred CCCCCEEEEcchHHHhHCCCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 457899999999988888864 45777777766777777777778877766553
No 493
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=88.32 E-value=0.51 Score=54.30 Aligned_cols=49 Identities=27% Similarity=0.475 Sum_probs=38.8
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
.+++++||||||||..+.+|.+.... + -+||.=|.-+|........++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~---------~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYP---------G-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhcc---------C-CEEEEECCCcHHHHHHHHHHHC
Confidence 47999999999999999999874311 1 4899999999988766666555
No 494
>CHL00095 clpC Clp protease ATP binding subunit
Probab=88.28 E-value=2.9 Score=51.63 Aligned_cols=23 Identities=26% Similarity=0.144 Sum_probs=17.9
Q ss_pred CCEEEEccCCCChhHHHHHHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIV 188 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~ 188 (779)
.++++.||+|+|||..+...+..
T Consensus 201 ~n~lL~G~pGvGKTal~~~la~~ 223 (821)
T CHL00095 201 NNPILIGEPGVGKTAIAEGLAQR 223 (821)
T ss_pred CCeEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999776544433
No 495
>KOG0742|consensus
Probab=88.24 E-value=4.7 Score=44.40 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=13.8
Q ss_pred CCEEEEccCCCChhH
Q psy17912 166 CDLVAIAKTGSGKTL 180 (779)
Q Consensus 166 ~dvii~apTGsGKTl 180 (779)
+|++..+|+|+|||+
T Consensus 385 RNilfyGPPGTGKTm 399 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTM 399 (630)
T ss_pred hheeeeCCCCCCchH
Confidence 689999999999994
No 496
>PRK13764 ATPase; Provisional
Probab=88.18 E-value=0.95 Score=53.19 Aligned_cols=27 Identities=11% Similarity=0.089 Sum_probs=19.8
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVN 191 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~ 191 (779)
..++++++||||||||.. +..++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTTl-l~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTF-AQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHh
Confidence 467899999999999954 344555543
No 497
>PRK06904 replicative DNA helicase; Validated
Probab=88.15 E-value=5.1 Score=46.11 Aligned_cols=157 Identities=17% Similarity=0.056 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc
Q psy17912 147 GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 147 g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 226 (779)
|+..-.+---+.+.-+..|.=+|+.|.||.|||...+-.+...... .+..++|++.- .-..|+...+-....
T Consensus 203 Gi~TG~~~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~-------~g~~Vl~fSlE-Ms~~ql~~Rlla~~s 274 (472)
T PRK06904 203 GVTTGFTDLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA-------SEKPVLVFSLE-MPAEQIMMRMLASLS 274 (472)
T ss_pred CccCChHHHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh-------cCCeEEEEecc-CCHHHHHHHHHHhhC
Q ss_pred cCCceEEEEeCC-CCChhhHHHhh-------cCCeEEE-----eChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCc-
Q psy17912 227 ATATRVACVFGG-APKGPQVKALQ-------TGAEIVI-----ATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGF- 292 (779)
Q Consensus 227 ~~~l~v~~~~gg-~~~~~~~~~l~-------~~~~IiV-----~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f- 292 (779)
++....+..+ .-..+++..+. ...++.| .|+..+...+..-......+++||||=.+.|...++
T Consensus 275 --~v~~~~i~~g~~l~~~e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~ 352 (472)
T PRK06904 275 --RVDQTKIRTGQNLDQQDWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMRAPGFE 352 (472)
T ss_pred --CCCHHHhccCCCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcCCCCCC
Q ss_pred ---hHHHHHHHhhcCC-----CCceEEee
Q psy17912 293 ---EPQIRKIIGQIRP-----DRQVLMWS 313 (779)
Q Consensus 293 ---~~~l~~il~~l~~-----~~qilllS 313 (779)
...+..|.+.+.. +.+++++|
T Consensus 353 ~~r~~ei~~isr~LK~lAkel~ipVi~ls 381 (472)
T PRK06904 353 DNRTLEIAEISRSLKALAKELKVPVVALS 381 (472)
T ss_pred CcHHHHHHHHHHHHHHHHHHhCCeEEEEE
No 498
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.15 E-value=0.97 Score=47.80 Aligned_cols=61 Identities=18% Similarity=0.282 Sum_probs=0.0
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEE
Q psy17912 125 RPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIV 204 (779)
Q Consensus 125 ~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~v 204 (779)
.++.+++++++++...+.|... ....+..++++++|||||| +++..++..+.. ...++
T Consensus 54 ~~~~~l~~lg~~~~~~~~l~~~--------------~~~~~GlilisG~tGSGKT-T~l~all~~i~~-------~~~~i 111 (264)
T cd01129 54 NQILDLEKLGLKPENLEIFRKL--------------LEKPHGIILVTGPTGSGKT-TTLYSALSELNT-------PEKNI 111 (264)
T ss_pred cCCCCHHHcCCCHHHHHHHHHH--------------HhcCCCEEEEECCCCCcHH-HHHHHHHhhhCC-------CCCeE
Q ss_pred EEE
Q psy17912 205 LVL 207 (779)
Q Consensus 205 Lil 207 (779)
+.+
T Consensus 112 iti 114 (264)
T cd01129 112 ITV 114 (264)
T ss_pred EEE
No 499
>PF05729 NACHT: NACHT domain
Probab=88.06 E-value=6 Score=37.67 Aligned_cols=142 Identities=13% Similarity=0.108 Sum_probs=0.0
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHH-HHHHhcccCCceEEEEeCCCCChhh
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIET-VANDFGSATATRVACVFGGAPKGPQ 244 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~-~~~~~~~~~~l~v~~~~gg~~~~~~ 244 (779)
+-+++.|+.|+|||....-.+............ ..+++..+.+........ .+..+.............. ..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSK---FPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEE----LL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCccccc---ceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHH----HH
Q ss_pred HHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCch-------HHHHHHHhh-cCCCCceEEeeccc
Q psy17912 245 VKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFE-------PQIRKIIGQ-IRPDRQVLMWSATW 316 (779)
Q Consensus 245 ~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~-------~~l~~il~~-l~~~~qilllSAT~ 316 (779)
.........++ ||||=+|.+....-. ..+..++.. +.++.++++.|.+-
T Consensus 74 ~~~~~~~~~~l-----------------------lilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~ 130 (166)
T PF05729_consen 74 QELLEKNKRVL-----------------------LILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPR 130 (166)
T ss_pred HHHHHcCCceE-----------------------EEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCC
Q ss_pred cHHHHHHHHHhccCcEEEecCCCC
Q psy17912 317 PKEVQKLAEDFLVDYVQLNIGSLN 340 (779)
Q Consensus 317 ~~~v~~l~~~~l~~~~~i~i~~~~ 340 (779)
+... ....+.....+.+....
T Consensus 131 ~~~~---~~~~~~~~~~~~l~~~~ 151 (166)
T PF05729_consen 131 AFPD---LRRRLKQAQILELEPFS 151 (166)
T ss_pred hHHH---HHHhcCCCcEEEECCCC
No 500
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=87.97 E-value=2.4 Score=49.04 Aligned_cols=129 Identities=14% Similarity=0.167 Sum_probs=0.0
Q ss_pred HhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCC
Q psy17912 162 ALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPK 241 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~ 241 (779)
+..|..+++.+|+|+|||+..+..+...+.. +.+++|++ .-+-..|+...++.++-
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~--------ge~~~y~s-~eEs~~~i~~~~~~lg~--------------- 315 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACAN--------KERAILFA-YEESRAQLLRNAYSWGI--------------- 315 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEE-eeCCHHHHHHHHHHcCC---------------
Q ss_pred hhhHHHhhcCCeEEEeC-------hHHHHHHHHcCCcCCCCeeEEEEccchhhh----cCCchHHHHHHHhhcCCCCceE
Q psy17912 242 GPQVKALQTGAEIVIAT-------PGRLIDYLEQGTINLHRTSYLVLDEADRML----DMGFEPQIRKIIGQIRPDRQVL 310 (779)
Q Consensus 242 ~~~~~~l~~~~~IiV~T-------pe~Ll~~l~~~~~~l~~i~~lViDEaH~l~----~~~f~~~l~~il~~l~~~~qil 310 (779)
....+.....+.+.. ++.++..+ ...+.-.+.+.||||=...+. ...+...+..+...++..--+.
T Consensus 316 --~~~~~~~~g~l~~~~~~p~~~~~~~~~~~i-~~~i~~~~~~~vvIDsi~~~~~~~~~~~~r~~~~~l~~~lk~~~it~ 392 (484)
T TIGR02655 316 --DFEEMEQQGLLKIICAYPESAGLEDHLQII-KSEIADFKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITG 392 (484)
T ss_pred --ChHHHhhCCcEEEEEcccccCChHHHHHHH-HHHHHHcCCCEEEEcCHHHHHHhcCHHHHHHHHHHHHHHHhhCCCeE
Q ss_pred Eeecccc
Q psy17912 311 MWSATWP 317 (779)
Q Consensus 311 llSAT~~ 317 (779)
+++...+
T Consensus 393 ~~t~~~~ 399 (484)
T TIGR02655 393 FFTNTSD 399 (484)
T ss_pred EEeeccc
Done!