Query psy17912
Match_columns 779
No_of_seqs 554 out of 3478
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 17:19:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 1.8E-58 6.1E-63 521.9 46.2 352 123-488 51-404 (434)
2 2i4i_A ATP-dependent RNA helic 100.0 2.3E-53 7.7E-58 476.4 43.2 356 123-490 10-382 (417)
3 2j0s_A ATP-dependent RNA helic 100.0 5.5E-52 1.9E-56 464.5 39.7 356 123-496 32-388 (410)
4 1s2m_A Putative ATP-dependent 100.0 4E-50 1.4E-54 447.7 41.2 355 124-497 17-371 (400)
5 3eiq_A Eukaryotic initiation f 100.0 1.5E-50 5.1E-55 452.8 35.8 347 123-487 35-383 (414)
6 3i5x_A ATP-dependent RNA helic 100.0 1.7E-50 5.7E-55 471.8 36.1 352 135-496 79-454 (563)
7 1xti_A Probable ATP-dependent 100.0 1.3E-49 4.4E-54 441.8 40.8 344 128-488 8-354 (391)
8 3fht_A ATP-dependent RNA helic 100.0 5.6E-49 1.9E-53 439.5 42.2 348 121-489 18-377 (412)
9 3pey_A ATP-dependent RNA helic 100.0 7.9E-49 2.7E-53 435.1 41.2 341 126-488 3-353 (395)
10 1hv8_A Putative ATP-dependent 100.0 2.2E-48 7.7E-53 427.1 40.1 336 127-487 5-341 (367)
11 1fuu_A Yeast initiation factor 100.0 4.9E-50 1.7E-54 445.3 22.9 356 123-497 16-372 (394)
12 3sqw_A ATP-dependent RNA helic 100.0 1.1E-48 3.7E-53 457.9 35.0 347 135-491 28-398 (579)
13 3fmp_B ATP-dependent RNA helic 100.0 4E-49 1.4E-53 451.1 22.2 344 125-489 89-444 (479)
14 2z0m_A 337AA long hypothetical 100.0 3.6E-46 1.2E-50 405.0 37.7 319 135-487 1-319 (337)
15 2v1x_A ATP-dependent DNA helic 100.0 1.8E-46 6.3E-51 437.2 36.8 342 130-499 23-382 (591)
16 1oyw_A RECQ helicase, ATP-depe 100.0 7.4E-46 2.5E-50 427.5 36.7 338 128-498 2-350 (523)
17 3fho_A ATP-dependent RNA helic 100.0 1E-45 3.5E-50 425.7 19.0 342 123-486 114-465 (508)
18 3oiy_A Reverse gyrase helicase 100.0 1.2E-43 4.1E-48 398.0 30.7 312 138-488 9-362 (414)
19 2va8_A SSO2462, SKI2-type heli 100.0 1.2E-42 4.1E-47 416.6 38.2 377 127-528 7-447 (715)
20 2zj8_A DNA helicase, putative 100.0 7E-43 2.4E-47 418.8 33.6 365 129-525 2-422 (720)
21 3l9o_A ATP-dependent RNA helic 100.0 2.2E-43 7.5E-48 436.0 27.9 362 129-521 163-628 (1108)
22 2p6r_A Afuhel308 helicase; pro 100.0 4.2E-43 1.4E-47 419.5 28.1 369 129-526 2-424 (702)
23 2ykg_A Probable ATP-dependent 100.0 3.5E-42 1.2E-46 411.5 24.6 327 141-480 4-506 (696)
24 2xgj_A ATP-dependent RNA helic 100.0 1.3E-40 4.6E-45 407.8 37.2 336 146-513 83-522 (1010)
25 4a2p_A RIG-I, retinoic acid in 100.0 5.5E-41 1.9E-45 389.8 30.3 320 147-479 4-497 (556)
26 4ddu_A Reverse gyrase; topoiso 100.0 5.8E-40 2E-44 405.4 36.1 279 146-463 75-388 (1104)
27 1tf5_A Preprotein translocase 100.0 9.8E-41 3.3E-45 390.0 26.3 377 70-486 19-540 (844)
28 3tbk_A RIG-I helicase domain; 100.0 1.9E-40 6.5E-45 384.7 27.0 317 149-479 3-496 (555)
29 4a4z_A Antiviral helicase SKI2 100.0 3E-39 1E-43 395.9 35.9 342 147-520 37-523 (997)
30 4a2q_A RIG-I, retinoic acid in 100.0 1.2E-39 4.1E-44 394.7 31.1 321 146-479 244-738 (797)
31 1wp9_A ATP-dependent RNA helic 100.0 1.2E-38 4.1E-43 361.7 36.2 313 150-480 9-465 (494)
32 1gku_B Reverse gyrase, TOP-RG; 100.0 7.7E-40 2.6E-44 404.4 27.4 281 141-462 48-352 (1054)
33 4gl2_A Interferon-induced heli 100.0 5.1E-40 1.7E-44 393.0 22.7 327 149-487 6-517 (699)
34 4a2w_A RIG-I, retinoic acid in 100.0 1.1E-38 3.8E-43 390.8 28.0 326 146-484 244-743 (936)
35 2fsf_A Preprotein translocase 100.0 4.6E-38 1.6E-42 366.4 25.7 322 146-486 71-578 (853)
36 4f92_B U5 small nuclear ribonu 100.0 1.1E-37 3.9E-42 397.6 31.5 340 135-499 911-1316(1724)
37 3fe2_A Probable ATP-dependent 100.0 1.7E-37 5.8E-42 322.5 27.0 238 90-339 3-240 (242)
38 4f92_B U5 small nuclear ribonu 100.0 7.7E-38 2.6E-42 399.1 28.0 333 135-487 66-469 (1724)
39 1nkt_A Preprotein translocase 100.0 1.1E-37 3.9E-42 363.2 26.8 323 146-486 108-612 (922)
40 1gm5_A RECG; helicase, replica 100.0 3E-37 1E-41 367.3 22.4 317 138-489 357-695 (780)
41 2eyq_A TRCF, transcription-rep 100.0 7.5E-36 2.6E-40 370.9 35.9 319 134-488 587-919 (1151)
42 2oca_A DAR protein, ATP-depend 100.0 3.3E-37 1.1E-41 355.1 21.3 306 149-481 112-445 (510)
43 2xau_A PRE-mRNA-splicing facto 100.0 7.4E-36 2.5E-40 357.4 27.2 340 124-493 68-445 (773)
44 2jlq_A Serine protease subunit 100.0 6.1E-37 2.1E-41 347.2 15.6 284 147-487 1-307 (451)
45 2whx_A Serine protease/ntpase/ 100.0 5.5E-37 1.9E-41 358.6 10.5 307 133-487 155-474 (618)
46 3iuy_A Probable ATP-dependent 100.0 3.3E-34 1.1E-38 294.8 24.3 219 117-336 8-228 (228)
47 2fwr_A DNA repair protein RAD2 100.0 4.4E-35 1.5E-39 334.1 17.4 283 149-480 92-440 (472)
48 1yks_A Genome polyprotein [con 100.0 2.1E-36 7.2E-41 341.4 4.5 271 161-487 4-295 (440)
49 2wv9_A Flavivirin protease NS2 100.0 2.9E-35 9.8E-40 346.2 12.9 289 143-487 203-529 (673)
50 1wrb_A DJVLGB; RNA helicase, D 100.0 1.2E-33 4.1E-38 295.3 23.1 218 123-340 16-243 (253)
51 2v6i_A RNA helicase; membrane, 100.0 8.6E-34 3E-38 319.4 21.6 271 164-480 1-279 (431)
52 3bor_A Human initiation factor 100.0 2.2E-33 7.6E-38 290.6 22.4 212 121-337 23-235 (237)
53 3o8b_A HCV NS3 protease/helica 100.0 6E-35 2E-39 338.8 11.8 275 150-483 217-507 (666)
54 3ber_A Probable ATP-dependent 100.0 4.6E-33 1.6E-37 290.5 23.6 209 124-337 39-248 (249)
55 2z83_A Helicase/nucleoside tri 100.0 5E-34 1.7E-38 323.9 17.1 268 159-486 15-308 (459)
56 1qde_A EIF4A, translation init 100.0 1.3E-32 4.6E-37 281.7 24.6 213 121-339 7-219 (224)
57 1vec_A ATP-dependent RNA helic 100.0 1.8E-32 6.2E-37 276.8 24.8 202 128-334 3-205 (206)
58 2oxc_A Probable ATP-dependent 100.0 1.1E-32 3.6E-37 284.1 23.2 210 121-336 17-228 (230)
59 3dkp_A Probable ATP-dependent 100.0 5.6E-33 1.9E-37 288.7 20.9 230 94-339 3-243 (245)
60 1q0u_A Bstdead; DEAD protein, 100.0 4.3E-33 1.5E-37 284.7 19.1 209 126-339 2-214 (219)
61 3fmo_B ATP-dependent RNA helic 100.0 2.1E-32 7.3E-37 293.2 24.2 207 123-337 87-298 (300)
62 2pl3_A Probable ATP-dependent 100.0 4.3E-32 1.5E-36 280.4 25.4 212 124-337 21-233 (236)
63 2gxq_A Heat resistant RNA depe 100.0 1.1E-31 3.6E-36 271.3 25.6 204 129-336 2-205 (207)
64 3ly5_A ATP-dependent RNA helic 100.0 1.2E-31 4.2E-36 281.8 23.4 203 128-331 52-257 (262)
65 3rc3_A ATP-dependent RNA helic 100.0 2.3E-31 7.8E-36 312.2 27.3 276 160-491 150-445 (677)
66 3h1t_A Type I site-specific re 100.0 1.6E-32 5.4E-37 321.8 17.5 306 150-479 178-544 (590)
67 1t6n_A Probable ATP-dependent 100.0 1.9E-31 6.4E-36 272.5 22.0 208 123-335 9-219 (220)
68 3dmq_A RNA polymerase-associat 100.0 1.8E-30 6.1E-35 318.6 21.6 311 149-482 152-604 (968)
69 1z63_A Helicase of the SNF2/RA 100.0 2.6E-29 8.9E-34 288.5 28.4 301 149-480 36-440 (500)
70 3jux_A Protein translocase sub 100.0 6.1E-28 2.1E-32 275.8 34.8 316 149-485 74-581 (822)
71 1z3i_X Similar to RAD54-like; 100.0 6.9E-27 2.3E-31 275.9 33.9 314 150-480 55-515 (644)
72 3mwy_W Chromo domain-containin 100.0 5.3E-27 1.8E-31 283.5 31.6 308 149-479 235-670 (800)
73 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 7.7E-28 2.6E-32 293.5 24.2 326 150-502 271-722 (1038)
74 2ipc_A Preprotein translocase 99.9 1.4E-24 4.7E-29 252.4 29.9 130 146-288 76-215 (997)
75 1c4o_A DNA nucleotide excision 99.9 8.2E-24 2.8E-28 249.6 26.6 162 305-486 379-545 (664)
76 2d7d_A Uvrabc system protein B 99.9 1.1E-22 3.9E-27 239.7 26.2 163 305-487 385-552 (661)
77 2hjv_A ATP-dependent RNA helic 99.9 7E-22 2.4E-26 192.1 19.4 144 343-498 6-149 (163)
78 2p6n_A ATP-dependent RNA helic 99.9 2.5E-22 8.5E-27 200.5 14.7 149 325-487 9-157 (191)
79 3b6e_A Interferon-induced heli 99.9 2E-22 6.9E-27 204.0 12.5 167 146-315 29-216 (216)
80 2rb4_A ATP-dependent RNA helic 99.9 1.5E-21 5E-26 192.1 16.9 139 344-494 5-150 (175)
81 1t5i_A C_terminal domain of A 99.9 1.6E-21 5.4E-26 191.4 16.4 132 345-488 4-135 (172)
82 2jgn_A DBX, DDX3, ATP-dependen 99.9 1.5E-21 5.2E-26 193.8 15.5 137 342-489 15-151 (185)
83 1fuk_A Eukaryotic initiation f 99.9 1.8E-21 6.1E-26 189.6 14.8 130 346-487 3-133 (165)
84 3eaq_A Heat resistant RNA depe 99.9 6.9E-21 2.4E-25 193.3 16.9 129 350-490 9-137 (212)
85 3i32_A Heat resistant RNA depe 99.8 2.7E-20 9.1E-25 198.4 15.2 129 347-487 3-131 (300)
86 3llm_A ATP-dependent RNA helic 99.8 4.9E-20 1.7E-24 190.0 16.0 171 147-331 58-231 (235)
87 1rif_A DAR protein, DNA helica 99.8 2.4E-20 8.2E-25 197.7 12.7 155 149-320 112-266 (282)
88 2vl7_A XPD; helicase, unknown 99.8 3.2E-19 1.1E-23 206.1 20.6 128 146-289 4-189 (540)
89 2yjt_D ATP-dependent RNA helic 99.7 2E-21 7E-26 190.2 0.0 141 346-498 3-144 (170)
90 3crv_A XPD/RAD3 related DNA he 99.8 2.7E-17 9.4E-22 190.5 28.7 271 150-442 3-456 (551)
91 2fz4_A DNA repair protein RAD2 99.7 6.4E-17 2.2E-21 166.9 15.4 139 149-319 92-231 (237)
92 4a15_A XPD helicase, ATP-depen 99.7 3.1E-15 1.1E-19 175.0 22.1 81 150-237 3-87 (620)
93 1z5z_A Helicase of the SNF2/RA 99.6 4.2E-15 1.4E-19 156.2 9.7 117 355-481 93-212 (271)
94 2db3_A ATP-dependent RNA helic 98.9 4.1E-08 1.4E-12 110.0 19.0 215 375-614 129-357 (434)
95 1oyw_A RECQ helicase, ATP-depe 98.8 4.2E-08 1.4E-12 112.6 17.2 218 375-614 65-293 (523)
96 1w36_D RECD, exodeoxyribonucle 98.6 4.5E-08 1.6E-12 114.2 9.4 146 152-315 151-298 (608)
97 2v1x_A ATP-dependent DNA helic 98.6 3.4E-07 1.2E-11 106.4 16.3 217 375-614 84-324 (591)
98 1xti_A Probable ATP-dependent 98.6 1.6E-06 5.5E-11 94.9 18.6 216 375-614 76-307 (391)
99 2i4i_A ATP-dependent RNA helic 98.5 1.2E-06 4.2E-11 96.8 16.3 214 376-614 102-333 (417)
100 2j0s_A ATP-dependent RNA helic 98.5 2.4E-06 8.2E-11 94.4 17.2 216 374-614 104-333 (410)
101 1gm5_A RECG; helicase, replica 98.4 7.8E-07 2.7E-11 106.1 11.6 210 375-614 417-646 (780)
102 2eyq_A TRCF, transcription-rep 98.4 3.3E-06 1.1E-10 105.2 17.6 211 374-614 651-871 (1151)
103 1hv8_A Putative ATP-dependent 98.4 7.8E-06 2.7E-10 88.3 18.6 221 365-614 64-295 (367)
104 3pey_A ATP-dependent RNA helic 98.3 3.7E-05 1.3E-09 83.9 21.0 208 374-614 74-300 (395)
105 3oiy_A Reverse gyrase helicase 98.3 7.5E-06 2.6E-10 90.7 15.1 205 373-613 62-303 (414)
106 3eiq_A Eukaryotic initiation f 98.2 1.2E-05 4.2E-10 88.5 15.7 226 363-614 95-337 (414)
107 3i5x_A ATP-dependent RNA helic 98.2 9.1E-06 3.1E-10 93.9 15.1 62 550-614 335-399 (563)
108 1s2m_A Putative ATP-dependent 98.2 3.8E-05 1.3E-09 84.3 18.8 214 374-614 88-315 (400)
109 3sqw_A ATP-dependent RNA helic 98.2 1.2E-05 4.1E-10 93.3 15.1 60 552-614 286-348 (579)
110 3fht_A ATP-dependent RNA helic 98.1 5.2E-05 1.8E-09 83.3 17.9 227 363-614 82-323 (412)
111 1fuu_A Yeast initiation factor 98.1 8E-06 2.7E-10 89.3 11.2 230 363-614 76-316 (394)
112 4ddu_A Reverse gyrase; topoiso 98.1 2E-05 7E-10 97.6 14.4 196 373-613 119-360 (1104)
113 1wp9_A ATP-dependent RNA helic 98.1 0.00011 3.6E-09 82.1 18.8 65 547-614 351-426 (494)
114 3fmp_B ATP-dependent RNA helic 98.0 1E-05 3.6E-10 91.5 10.1 211 376-614 163-390 (479)
115 1tf5_A Preprotein translocase 98.0 0.0001 3.5E-09 87.0 18.0 58 551-613 429-486 (844)
116 4a2p_A RIG-I, retinoic acid in 97.9 5.1E-05 1.7E-09 87.0 13.9 60 552-614 388-460 (556)
117 2jgn_A DBX, DDX3, ATP-dependen 97.9 7.8E-06 2.7E-10 80.3 5.4 65 547-614 39-103 (185)
118 3tbk_A RIG-I helicase domain; 97.9 7.3E-05 2.5E-09 85.5 14.4 58 554-614 389-459 (555)
119 4b3f_X DNA-binding protein smu 97.9 1.7E-05 5.7E-10 93.3 9.1 68 149-224 188-256 (646)
120 4a2q_A RIG-I, retinoic acid in 97.9 0.0001 3.5E-09 88.8 15.3 60 552-614 629-701 (797)
121 3e1s_A Exodeoxyribonuclease V, 97.9 3.6E-05 1.2E-09 88.8 10.8 127 149-314 188-314 (574)
122 2hjv_A ATP-dependent RNA helic 97.9 1.7E-05 5.9E-10 75.9 6.5 58 554-614 35-92 (163)
123 1t5i_A C_terminal domain of A 97.8 1.7E-05 5.7E-10 76.9 6.3 58 554-614 31-88 (172)
124 2gk6_A Regulator of nonsense t 97.8 0.0001 3.6E-09 86.1 14.2 70 148-224 178-247 (624)
125 2p6n_A ATP-dependent RNA helic 97.8 2.1E-05 7.3E-10 77.6 7.1 58 554-614 54-111 (191)
126 2z0m_A 337AA long hypothetical 97.8 0.00016 5.4E-09 77.0 14.4 203 375-614 56-273 (337)
127 3upu_A ATP-dependent DNA helic 97.8 5.8E-05 2E-09 85.0 11.1 69 146-221 21-94 (459)
128 1fuk_A Eukaryotic initiation f 97.8 2.7E-05 9.2E-10 74.7 6.8 64 547-614 24-87 (165)
129 2ykg_A Probable ATP-dependent 97.8 0.00019 6.3E-09 85.1 15.1 62 553-614 397-468 (696)
130 4gl2_A Interferon-induced heli 97.8 1.7E-05 5.7E-10 94.1 5.8 58 554-614 400-471 (699)
131 2xzl_A ATP-dependent helicase 97.8 0.00016 5.5E-09 86.6 14.2 70 148-224 358-427 (802)
132 3fho_A ATP-dependent RNA helic 97.7 0.00012 4.2E-09 83.4 12.1 58 554-614 357-414 (508)
133 2oca_A DAR protein, ATP-depend 97.7 0.00075 2.6E-08 76.7 18.5 222 374-615 156-405 (510)
134 3lfu_A DNA helicase II; SF1 he 97.7 0.0013 4.3E-08 77.2 20.7 71 149-225 8-78 (647)
135 3eaq_A Heat resistant RNA depe 97.7 3.8E-05 1.3E-09 77.0 6.4 64 547-614 25-88 (212)
136 2rb4_A ATP-dependent RNA helic 97.7 3.7E-05 1.3E-09 74.5 6.0 58 554-614 34-91 (175)
137 2wjy_A Regulator of nonsense t 97.7 0.00023 7.8E-09 85.2 13.9 70 148-224 354-423 (800)
138 4a2w_A RIG-I, retinoic acid in 97.7 0.00028 9.7E-09 86.3 14.7 60 552-614 629-701 (936)
139 2fsf_A Preprotein translocase 97.6 0.0004 1.4E-08 81.8 14.8 58 552-614 439-496 (853)
140 1nkt_A Preprotein translocase 97.6 0.0016 5.4E-08 77.1 18.9 60 550-614 456-515 (922)
141 3i32_A Heat resistant RNA depe 97.6 6.5E-05 2.2E-09 79.5 6.2 65 546-614 21-85 (300)
142 1gku_B Reverse gyrase, TOP-RG; 97.5 0.00013 4.3E-09 90.4 8.1 198 374-613 98-325 (1054)
143 3l9o_A ATP-dependent RNA helic 97.4 0.00075 2.6E-08 83.7 13.1 71 543-613 428-536 (1108)
144 2yjt_D ATP-dependent RNA helic 96.5 2.6E-05 8.9E-10 75.2 0.0 58 554-614 30-87 (170)
145 2zj8_A DNA helicase, putative 97.1 0.0018 6.3E-08 76.9 11.6 216 375-614 68-327 (720)
146 2d7d_A Uvrabc system protein B 97.0 0.00061 2.1E-08 80.1 7.1 60 551-613 442-501 (661)
147 4a4z_A Antiviral helicase SKI2 97.0 0.0063 2.1E-07 74.7 15.4 71 543-613 323-431 (997)
148 2xgj_A ATP-dependent RNA helic 97.0 0.0031 1.1E-07 77.5 12.5 70 545-614 332-439 (1010)
149 2p6r_A Afuhel308 helicase; pro 96.9 0.0063 2.2E-07 72.1 13.9 68 544-614 232-329 (702)
150 1c4o_A DNA nucleotide excision 96.9 0.0012 4E-08 77.7 7.4 60 551-613 436-495 (664)
151 1z5z_A Helicase of the SNF2/RA 96.8 0.0014 4.7E-08 68.2 6.9 65 546-613 103-171 (271)
152 3h1t_A Type I site-specific re 96.8 0.0094 3.2E-07 69.0 13.8 62 552-614 437-506 (590)
153 3o8b_A HCV NS3 protease/helica 96.7 0.014 4.7E-07 68.0 14.6 52 553-614 395-446 (666)
154 2va8_A SSO2462, SKI2-type heli 96.7 0.0042 1.4E-07 73.7 10.3 72 543-614 241-345 (715)
155 2v6i_A RNA helicase; membrane, 96.6 0.0077 2.6E-07 66.9 11.5 54 554-614 171-224 (431)
156 2fwr_A DNA repair protein RAD2 96.6 0.0083 2.9E-07 67.2 11.9 60 546-614 342-401 (472)
157 2o0j_A Terminase, DNA packagin 96.4 0.009 3.1E-07 65.1 9.9 71 150-226 163-233 (385)
158 3hgt_A HDA1 complex subunit 3; 96.4 0.0093 3.2E-07 63.0 9.6 114 355-478 106-220 (328)
159 3ec2_A DNA replication protein 96.4 0.0089 3.1E-07 57.5 8.8 19 164-182 37-55 (180)
160 3cpe_A Terminase, DNA packagin 96.3 0.036 1.2E-06 64.1 14.8 73 150-228 163-235 (592)
161 2orw_A Thymidine kinase; TMTK, 96.2 0.0079 2.7E-07 58.6 7.4 40 164-211 2-41 (184)
162 1xx6_A Thymidine kinase; NESG, 96.2 0.0071 2.4E-07 59.3 7.0 40 164-211 7-46 (191)
163 1z3i_X Similar to RAD54-like; 96.2 0.0057 1.9E-07 71.7 7.2 69 543-614 403-476 (644)
164 3jux_A Protein translocase sub 96.1 0.0077 2.6E-07 69.9 7.5 59 550-613 470-528 (822)
165 2b8t_A Thymidine kinase; deoxy 96.1 0.0098 3.3E-07 59.8 7.5 92 164-288 11-102 (223)
166 3dmq_A RNA polymerase-associat 96.1 0.004 1.4E-07 76.3 5.5 59 553-614 502-563 (968)
167 2xau_A PRE-mRNA-splicing facto 95.9 0.016 5.5E-07 69.2 9.5 61 554-614 303-376 (773)
168 3vkw_A Replicase large subunit 95.8 0.021 7.1E-07 63.1 8.8 107 166-314 162-268 (446)
169 1l8q_A Chromosomal replication 95.6 0.12 4E-06 54.7 13.8 18 165-182 37-54 (324)
170 3te6_A Regulatory protein SIR3 95.6 0.07 2.4E-06 56.5 11.7 21 164-184 44-64 (318)
171 2j9r_A Thymidine kinase; TK1, 95.3 0.015 5.2E-07 57.7 5.2 40 165-212 28-67 (214)
172 1yks_A Genome polyprotein [con 95.3 0.0078 2.7E-07 67.1 3.2 54 554-614 177-230 (440)
173 1z63_A Helicase of the SNF2/RA 95.2 0.018 6.1E-07 65.0 6.2 65 547-614 333-401 (500)
174 3rc3_A ATP-dependent RNA helic 95.2 0.016 5.4E-07 67.9 5.6 55 557-614 323-379 (677)
175 2kjq_A DNAA-related protein; s 95.0 0.01 3.5E-07 55.7 2.9 18 164-181 35-52 (149)
176 2p65_A Hypothetical protein PF 95.0 0.16 5.5E-06 48.1 11.3 19 165-183 43-61 (187)
177 2zpa_A Uncharacterized protein 94.9 0.043 1.5E-06 63.6 8.1 112 150-316 175-288 (671)
178 3bos_A Putative DNA replicatio 94.9 0.037 1.3E-06 55.2 6.7 19 164-182 51-69 (242)
179 2whx_A Serine protease/ntpase/ 94.8 0.019 6.5E-07 66.7 4.9 54 554-614 355-408 (618)
180 2w58_A DNAI, primosome compone 94.8 0.23 7.7E-06 48.3 12.1 17 166-182 55-71 (202)
181 2z4s_A Chromosomal replication 94.7 0.32 1.1E-05 53.9 14.6 19 165-183 130-148 (440)
182 3kl4_A SRP54, signal recogniti 94.7 0.058 2E-06 59.6 8.2 132 166-328 98-235 (433)
183 2wv9_A Flavivirin protease NS2 94.7 0.023 7.7E-07 66.7 5.3 55 553-614 409-463 (673)
184 2v1u_A Cell division control p 94.6 0.14 4.9E-06 54.9 11.2 19 164-182 43-61 (387)
185 3u61_B DNA polymerase accessor 94.5 0.088 3E-06 55.6 8.9 40 274-313 104-143 (324)
186 2z83_A Helicase/nucleoside tri 94.5 0.018 6.1E-07 64.5 3.5 54 554-614 190-243 (459)
187 3h4m_A Proteasome-activating n 94.5 0.34 1.1E-05 49.9 13.1 55 126-182 12-68 (285)
188 1a5t_A Delta prime, HOLB; zinc 94.3 0.13 4.5E-06 54.7 9.8 34 151-184 3-43 (334)
189 2orv_A Thymidine kinase; TP4A 94.3 0.065 2.2E-06 53.8 6.8 40 164-211 18-57 (234)
190 1d2n_A N-ethylmaleimide-sensit 94.3 0.37 1.3E-05 49.3 12.9 18 166-183 65-82 (272)
191 3e2i_A Thymidine kinase; Zn-bi 94.2 0.056 1.9E-06 53.6 6.0 41 164-212 27-67 (219)
192 2jlq_A Serine protease subunit 94.1 0.042 1.4E-06 61.3 5.6 54 554-614 188-241 (451)
193 2chg_A Replication factor C sm 94.1 0.28 9.6E-06 47.7 11.1 39 274-313 101-139 (226)
194 3mwy_W Chromo domain-containin 94.0 0.058 2E-06 64.7 6.8 67 544-613 561-631 (800)
195 1w4r_A Thymidine kinase; type 93.9 0.059 2E-06 52.7 5.5 39 164-210 19-57 (195)
196 2qgz_A Helicase loader, putati 93.7 0.24 8.1E-06 52.1 10.2 19 165-183 152-170 (308)
197 1uaa_A REP helicase, protein ( 93.7 0.074 2.5E-06 62.5 6.9 70 150-225 2-71 (673)
198 1jbk_A CLPB protein; beta barr 93.6 0.34 1.2E-05 45.8 10.4 18 165-182 43-60 (195)
199 3pfi_A Holliday junction ATP-d 93.5 0.51 1.7E-05 49.9 12.6 42 129-182 27-72 (338)
200 1fnn_A CDC6P, cell division co 93.5 0.32 1.1E-05 52.3 11.1 16 167-182 46-61 (389)
201 2qby_B CDC6 homolog 3, cell di 93.5 0.3 1E-05 52.5 10.8 18 165-182 45-62 (384)
202 3syl_A Protein CBBX; photosynt 93.4 0.085 2.9E-06 55.2 6.1 18 166-183 68-85 (309)
203 1pjr_A PCRA; DNA repair, DNA r 92.9 0.18 6.1E-06 59.7 8.6 71 149-225 10-80 (724)
204 3dm5_A SRP54, signal recogniti 92.8 0.5 1.7E-05 52.1 11.3 132 166-328 101-236 (443)
205 3cf0_A Transitional endoplasmi 92.8 0.49 1.7E-05 49.4 10.8 54 126-182 10-66 (301)
206 1jr3_A DNA polymerase III subu 92.5 1.1 3.8E-05 47.7 13.5 16 167-182 40-55 (373)
207 3eie_A Vacuolar protein sortin 92.5 0.84 2.9E-05 48.1 12.3 47 126-182 13-68 (322)
208 2qby_A CDC6 homolog 1, cell di 92.4 0.28 9.6E-06 52.5 8.6 18 165-182 45-62 (386)
209 1njg_A DNA polymerase III subu 92.4 1.6 5.6E-05 42.6 13.7 16 167-182 47-62 (250)
210 3u4q_A ATP-dependent helicase/ 92.2 0.19 6.5E-06 63.2 7.8 126 149-285 9-137 (1232)
211 1g5t_A COB(I)alamin adenosyltr 92.1 0.58 2E-05 45.6 9.4 139 166-324 29-171 (196)
212 1sxj_A Activator 1 95 kDa subu 91.8 0.42 1.4E-05 54.1 9.5 41 274-316 147-189 (516)
213 1sxj_E Activator 1 40 kDa subu 91.5 0.29 9.9E-06 52.1 7.3 42 273-315 132-173 (354)
214 1hqc_A RUVB; extended AAA-ATPa 90.9 0.95 3.2E-05 47.3 10.6 18 165-182 38-55 (324)
215 1iqp_A RFCS; clamp loader, ext 90.9 1.1 3.7E-05 46.7 11.0 39 274-313 109-147 (327)
216 2gno_A DNA polymerase III, gam 90.8 0.53 1.8E-05 49.4 8.3 43 273-317 80-122 (305)
217 3vfd_A Spastin; ATPase, microt 90.5 1.3 4.4E-05 48.0 11.4 18 165-182 148-165 (389)
218 4b4t_J 26S protease regulatory 90.1 3.5 0.00012 44.8 14.1 54 126-182 143-199 (405)
219 2dr3_A UPF0273 protein PH0284; 90.0 1 3.5E-05 44.8 9.4 52 164-224 22-73 (247)
220 2w0m_A SSO2452; RECA, SSPF, un 89.6 0.78 2.7E-05 45.1 8.0 21 164-184 22-42 (235)
221 1sxj_C Activator 1 40 kDa subu 89.3 2.8 9.6E-05 44.2 12.6 38 274-312 109-146 (340)
222 2qp9_X Vacuolar protein sortin 89.1 1.4 4.7E-05 47.2 10.1 19 165-183 84-102 (355)
223 3hu3_A Transitional endoplasmi 89.0 1.3 4.4E-05 49.7 10.1 43 276-318 298-350 (489)
224 2chq_A Replication factor C sm 88.4 1 3.5E-05 46.7 8.4 16 167-182 40-55 (319)
225 2l82_A Designed protein OR32; 88.3 11 0.00038 32.2 13.1 46 378-423 5-50 (162)
226 1sxj_D Activator 1 41 kDa subu 87.4 2.3 7.9E-05 44.8 10.5 39 274-313 132-170 (353)
227 2px0_A Flagellar biosynthesis 86.8 1.9 6.4E-05 44.9 9.1 23 164-186 104-126 (296)
228 3pvs_A Replication-associated 86.6 0.54 1.9E-05 52.2 5.1 17 166-182 51-67 (447)
229 2r6a_A DNAB helicase, replicat 86.5 1.7 5.9E-05 48.1 9.1 24 164-187 202-225 (454)
230 1w5s_A Origin recognition comp 86.5 0.66 2.2E-05 50.3 5.6 17 166-182 51-69 (412)
231 1sxj_B Activator 1 37 kDa subu 86.4 1.6 5.5E-05 45.3 8.4 38 275-313 107-144 (323)
232 2fna_A Conserved hypothetical 86.3 12 0.00043 38.8 15.6 52 258-313 123-177 (357)
233 1t6n_A Probable ATP-dependent 86.0 2.4 8.4E-05 41.3 9.1 56 375-433 82-142 (220)
234 4a1f_A DNAB helicase, replicat 85.4 1.1 3.6E-05 47.8 6.4 38 164-209 45-82 (338)
235 2q6t_A DNAB replication FORK h 85.0 1.6 5.4E-05 48.3 7.8 39 164-209 199-237 (444)
236 1ls1_A Signal recognition part 83.7 3.8 0.00013 42.5 9.6 53 274-326 179-232 (295)
237 1vma_A Cell division protein F 83.4 7.4 0.00025 40.6 11.7 20 165-184 104-123 (306)
238 1qvr_A CLPB protein; coiled co 83.2 2.1 7.2E-05 51.5 8.4 19 165-183 191-209 (854)
239 3bh0_A DNAB-like replicative h 83.1 5.5 0.00019 41.7 10.7 49 164-221 67-115 (315)
240 2ehv_A Hypothetical protein PH 82.7 0.94 3.2E-05 45.2 4.4 23 163-185 28-50 (251)
241 1nlf_A Regulatory protein REPA 82.3 5.6 0.00019 40.6 10.2 25 162-186 27-51 (279)
242 3cmu_A Protein RECA, recombina 82.2 2.1 7.2E-05 55.6 8.1 40 165-212 1427-1466(2050)
243 3fe2_A Probable ATP-dependent 81.8 4.7 0.00016 40.0 9.3 56 374-433 101-160 (242)
244 4a74_A DNA repair and recombin 81.7 7.7 0.00026 37.7 10.7 19 164-182 24-42 (231)
245 3co5_A Putative two-component 81.2 1.7 5.7E-05 39.7 5.1 21 161-181 23-43 (143)
246 2zts_A Putative uncharacterize 80.9 1.9 6.3E-05 42.9 5.8 53 164-224 29-81 (251)
247 1n0w_A DNA repair protein RAD5 80.7 9.4 0.00032 37.5 11.0 22 164-185 23-44 (243)
248 3n70_A Transport activator; si 80.2 1.3 4.4E-05 40.5 4.0 21 162-182 21-41 (145)
249 3ber_A Probable ATP-dependent 80.2 5.3 0.00018 40.1 9.0 56 374-433 110-169 (249)
250 3m6a_A ATP-dependent protease 79.6 2 7E-05 48.7 6.2 19 164-182 107-125 (543)
251 3iuy_A Probable ATP-dependent 79.5 4.5 0.00015 39.7 8.0 56 374-433 93-151 (228)
252 1r6b_X CLPA protein; AAA+, N-t 79.4 7.4 0.00025 45.9 11.3 20 164-183 206-225 (758)
253 2eyu_A Twitching motility prot 79.1 1 3.5E-05 46.0 3.2 21 162-182 22-42 (261)
254 2w00_A HSDR, R.ECOR124I; ATP-b 78.3 2.8 9.5E-05 51.4 7.1 73 356-433 310-383 (1038)
255 2pl3_A Probable ATP-dependent 78.1 4.2 0.00014 40.2 7.3 55 374-433 96-154 (236)
256 3hjh_A Transcription-repair-co 78.0 5.9 0.0002 44.2 9.2 52 164-226 13-64 (483)
257 2oxc_A Probable ATP-dependent 77.1 4.2 0.00015 40.0 7.1 66 363-433 79-150 (230)
258 2v3c_C SRP54, signal recogniti 77.0 2.4 8.3E-05 46.6 5.6 54 274-327 179-233 (432)
259 2z43_A DNA repair and recombin 75.6 4.2 0.00014 42.7 6.9 59 164-224 106-165 (324)
260 2ffh_A Protein (FFH); SRP54, s 75.6 16 0.00054 39.9 11.6 54 274-327 179-233 (425)
261 3cf2_A TER ATPase, transitiona 75.6 6.4 0.00022 46.7 9.0 16 166-181 239-254 (806)
262 3e70_C DPA, signal recognition 75.6 10 0.00036 39.8 9.9 54 275-328 211-265 (328)
263 2l8b_A Protein TRAI, DNA helic 75.2 4.6 0.00016 38.7 6.2 120 152-315 36-158 (189)
264 3jvv_A Twitching mobility prot 75.2 2.7 9.3E-05 44.9 5.3 18 164-181 122-139 (356)
265 1lv7_A FTSH; alpha/beta domain 75.0 3.8 0.00013 41.1 6.1 44 127-182 8-62 (257)
266 4b4t_M 26S protease regulatory 74.8 3.4 0.00011 45.4 5.9 55 124-181 174-231 (434)
267 3pxi_A Negative regulator of g 74.7 8.8 0.0003 45.3 10.1 17 167-183 523-539 (758)
268 1p9r_A General secretion pathw 74.1 3.4 0.00011 45.3 5.7 18 164-181 166-183 (418)
269 2gxq_A Heat resistant RNA depe 73.6 9.1 0.00031 36.5 8.3 56 374-433 71-128 (207)
270 1e9r_A Conjugal transfer prote 73.2 3.3 0.00011 45.4 5.5 43 165-215 53-95 (437)
271 2qz4_A Paraplegin; AAA+, SPG7, 73.0 5.2 0.00018 40.0 6.5 18 165-182 39-56 (262)
272 3ly5_A ATP-dependent RNA helic 71.9 8.2 0.00028 38.9 7.8 56 374-433 125-184 (262)
273 1vec_A ATP-dependent RNA helic 71.9 6.3 0.00022 37.7 6.6 56 374-433 70-130 (206)
274 4b4t_L 26S protease subunit RP 69.6 5.7 0.00019 43.6 6.2 55 125-182 175-232 (437)
275 3cf2_A TER ATPase, transitiona 69.5 4.7 0.00016 47.9 5.9 56 125-181 471-527 (806)
276 3b85_A Phosphate starvation-in 69.0 5.5 0.00019 39.0 5.4 31 152-182 9-39 (208)
277 3b9p_A CG5977-PA, isoform A; A 68.6 6.1 0.00021 40.4 6.0 18 165-182 54-71 (297)
278 1xwi_A SKD1 protein; VPS4B, AA 68.4 5.6 0.00019 41.7 5.7 47 126-182 7-62 (322)
279 1j8m_F SRP54, signal recogniti 68.2 29 0.001 35.7 11.2 53 274-326 179-234 (297)
280 2oap_1 GSPE-2, type II secreti 68.2 4.3 0.00015 45.7 5.0 31 151-181 245-276 (511)
281 2bjv_A PSP operon transcriptio 67.8 5 0.00017 40.4 5.1 20 163-182 27-46 (265)
282 2r62_A Cell division protease 67.8 4.1 0.00014 41.1 4.4 19 165-183 44-62 (268)
283 1ixz_A ATP-dependent metallopr 67.4 9.4 0.00032 38.1 7.0 55 125-182 10-66 (254)
284 2j37_W Signal recognition part 67.2 11 0.00038 42.2 8.1 53 274-326 182-235 (504)
285 1wrb_A DJVLGB; RNA helicase, D 67.0 7 0.00024 39.0 6.0 55 375-433 100-158 (253)
286 3uk6_A RUVB-like 2; hexameric 67.0 7.4 0.00025 41.1 6.5 47 125-183 38-88 (368)
287 4b4t_H 26S protease regulatory 66.8 6.2 0.00021 43.6 5.8 53 125-182 203-260 (467)
288 2i1q_A DNA repair and recombin 66.7 7.3 0.00025 40.6 6.2 20 165-184 98-117 (322)
289 3bor_A Human initiation factor 66.1 11 0.00036 37.3 7.0 57 374-433 97-157 (237)
290 1v5w_A DMC1, meiotic recombina 65.8 11 0.00039 39.8 7.5 65 158-224 110-180 (343)
291 4b4t_K 26S protease regulatory 65.7 7.9 0.00027 42.4 6.4 55 125-182 166-223 (428)
292 4ag6_A VIRB4 ATPase, type IV s 65.3 4.8 0.00017 43.4 4.6 42 164-213 34-75 (392)
293 3io5_A Recombination and repai 64.9 8.3 0.00028 40.5 6.0 42 167-214 30-71 (333)
294 2c9o_A RUVB-like 1; hexameric 64.8 7.8 0.00027 42.7 6.3 47 125-183 31-81 (456)
295 1pzn_A RAD51, DNA repair and r 64.6 12 0.00039 39.8 7.3 21 164-184 130-150 (349)
296 1qde_A EIF4A, translation init 64.2 11 0.00038 36.5 6.7 66 363-433 69-139 (224)
297 3hws_A ATP-dependent CLP prote 63.8 11 0.00037 40.0 7.0 19 164-182 50-68 (363)
298 4b4t_I 26S protease regulatory 63.6 9.3 0.00032 41.7 6.3 55 125-182 176-233 (437)
299 2ewv_A Twitching motility prot 63.5 2.3 7.9E-05 45.8 1.5 21 162-182 133-153 (372)
300 1kgd_A CASK, peripheral plasma 63.3 4 0.00014 38.6 3.1 19 164-182 4-22 (180)
301 1q0u_A Bstdead; DEAD protein, 62.3 5.8 0.0002 38.6 4.1 67 363-433 59-134 (219)
302 2gza_A Type IV secretion syste 61.9 4.7 0.00016 43.1 3.7 21 161-181 171-191 (361)
303 1iy2_A ATP-dependent metallopr 61.4 13 0.00045 37.7 6.8 54 126-182 35-90 (278)
304 3a8t_A Adenylate isopentenyltr 61.3 3.7 0.00013 43.5 2.6 17 165-181 40-56 (339)
305 3vaa_A Shikimate kinase, SK; s 61.3 4.5 0.00015 38.9 3.1 21 163-183 23-43 (199)
306 1lvg_A Guanylate kinase, GMP k 61.2 4.6 0.00016 39.0 3.2 19 164-182 3-21 (198)
307 1ofh_A ATP-dependent HSL prote 60.8 15 0.0005 37.5 7.1 18 165-182 50-67 (310)
308 3tau_A Guanylate kinase, GMP k 60.5 4.7 0.00016 39.2 3.1 19 164-182 7-25 (208)
309 2yhs_A FTSY, cell division pro 60.4 38 0.0013 37.7 10.7 54 275-328 375-435 (503)
310 3cmw_A Protein RECA, recombina 59.4 8.1 0.00028 49.6 5.6 90 165-289 1431-1523(1706)
311 3nwn_A Kinesin-like protein KI 58.6 6.4 0.00022 42.0 3.9 25 157-181 95-121 (359)
312 3d8b_A Fidgetin-like protein 1 58.4 10 0.00035 40.2 5.6 19 164-182 116-134 (357)
313 3trf_A Shikimate kinase, SK; a 57.9 5.6 0.00019 37.5 3.0 20 165-184 5-24 (185)
314 2jtq_A Phage shock protein E; 57.5 15 0.00053 29.7 5.3 47 363-410 29-76 (85)
315 3exa_A TRNA delta(2)-isopenten 57.2 4.8 0.00017 42.2 2.6 17 166-182 4-20 (322)
316 2qmh_A HPR kinase/phosphorylas 57.1 5.3 0.00018 39.0 2.6 18 164-181 33-50 (205)
317 2pt7_A CAG-ALFA; ATPase, prote 57.0 5 0.00017 42.4 2.7 20 162-181 168-187 (330)
318 2qor_A Guanylate kinase; phosp 56.4 5.6 0.00019 38.4 2.8 21 162-182 9-29 (204)
319 1bg2_A Kinesin; motor protein, 56.2 7.7 0.00026 40.8 4.0 25 157-181 68-94 (325)
320 3iij_A Coilin-interacting nucl 56.2 4.6 0.00016 38.0 2.1 21 163-183 9-29 (180)
321 3tr0_A Guanylate kinase, GMP k 56.0 5.9 0.0002 37.9 2.9 19 164-182 6-24 (205)
322 3nbx_X ATPase RAVA; AAA+ ATPas 55.8 6.2 0.00021 44.2 3.3 26 156-181 32-57 (500)
323 2r44_A Uncharacterized protein 55.5 6.1 0.00021 41.3 3.1 23 160-182 41-63 (331)
324 1ojl_A Transcriptional regulat 55.4 10 0.00035 39.3 4.8 20 163-182 23-42 (304)
325 3foj_A Uncharacterized protein 55.3 8.7 0.0003 32.4 3.5 37 374-410 55-91 (100)
326 3dc4_A Kinesin-like protein NO 55.2 7.4 0.00025 41.3 3.7 25 157-181 85-111 (344)
327 3foz_A TRNA delta(2)-isopenten 55.2 6 0.0002 41.3 2.9 16 167-182 12-27 (316)
328 3ney_A 55 kDa erythrocyte memb 55.1 6.8 0.00023 38.0 3.1 19 164-182 18-36 (197)
329 2j41_A Guanylate kinase; GMP, 55.0 6.3 0.00021 37.7 2.9 20 163-182 4-23 (207)
330 3gk5_A Uncharacterized rhodane 54.7 8.5 0.00029 33.1 3.4 38 374-411 54-91 (108)
331 1kag_A SKI, shikimate kinase I 54.3 7.8 0.00027 35.9 3.4 18 165-182 4-21 (173)
332 2h58_A Kinesin-like protein KI 54.1 8.8 0.0003 40.5 4.0 26 157-182 71-98 (330)
333 3eme_A Rhodanese-like domain p 54.1 8.3 0.00029 32.7 3.2 37 374-410 55-91 (103)
334 1v8k_A Kinesin-like protein KI 54.1 8.1 0.00028 42.0 3.8 26 157-182 145-172 (410)
335 3lw7_A Adenylate kinase relate 54.0 5.4 0.00019 36.7 2.2 17 167-183 3-19 (179)
336 3a00_A Guanylate kinase, GMP k 53.9 7.7 0.00026 36.8 3.3 17 166-182 2-18 (186)
337 3b6u_A Kinesin-like protein KI 53.8 8.5 0.00029 41.3 3.9 25 157-181 92-118 (372)
338 2vvg_A Kinesin-2; motor protei 53.8 8.9 0.0003 40.8 4.0 26 157-182 80-107 (350)
339 2ze6_A Isopentenyl transferase 53.7 6.6 0.00023 39.6 2.9 16 167-182 3-18 (253)
340 2zan_A Vacuolar protein sortin 53.7 15 0.0005 40.4 5.9 51 126-182 129-184 (444)
341 2x8a_A Nuclear valosin-contain 53.6 8.6 0.00029 39.3 3.8 53 126-181 5-60 (274)
342 4etp_A Kinesin-like protein KA 53.6 9.2 0.00031 41.5 4.2 26 157-182 131-158 (403)
343 2y65_A Kinesin, kinesin heavy 53.4 9 0.00031 41.0 4.0 25 157-181 75-101 (365)
344 4a14_A Kinesin, kinesin-like p 53.4 9 0.00031 40.6 4.0 25 157-181 74-100 (344)
345 2zfi_A Kinesin-like protein KI 53.4 9 0.00031 41.0 4.0 25 157-181 80-106 (366)
346 1t5c_A CENP-E protein, centrom 53.4 8.8 0.0003 40.8 3.9 26 157-182 68-95 (349)
347 2nr8_A Kinesin-like protein KI 53.3 8.8 0.0003 40.9 3.9 25 157-181 94-120 (358)
348 3gbj_A KIF13B protein; kinesin 53.0 9 0.00031 40.8 3.9 26 157-182 83-110 (354)
349 1goj_A Kinesin, kinesin heavy 52.8 8.9 0.00031 40.9 3.8 25 157-181 71-97 (355)
350 3lre_A Kinesin-like protein KI 52.4 9.1 0.00031 40.8 3.8 24 158-181 97-122 (355)
351 1qhx_A CPT, protein (chloramph 52.4 7.8 0.00027 36.1 3.0 18 165-182 3-20 (178)
352 1z6g_A Guanylate kinase; struc 52.4 8.5 0.00029 37.7 3.4 21 162-182 20-40 (218)
353 1zp6_A Hypothetical protein AT 52.3 6.5 0.00022 37.2 2.4 20 162-181 6-25 (191)
354 1um8_A ATP-dependent CLP prote 52.1 25 0.00085 37.3 7.4 18 165-182 72-89 (376)
355 1x88_A Kinesin-like protein KI 52.1 8.7 0.0003 41.0 3.6 25 157-181 79-105 (359)
356 1ex7_A Guanylate kinase; subst 51.9 7.1 0.00024 37.5 2.6 16 166-181 2-17 (186)
357 1y63_A LMAJ004144AAA protein; 51.8 8.2 0.00028 36.5 3.1 19 164-182 9-27 (184)
358 3iwh_A Rhodanese-like domain p 51.8 9.6 0.00033 32.6 3.2 37 374-410 55-91 (103)
359 3t0q_A AGR253WP; kinesin, alph 51.5 8.2 0.00028 41.0 3.3 26 157-182 76-103 (349)
360 2wbe_C Bipolar kinesin KRP-130 51.2 9.3 0.00032 41.0 3.7 25 157-181 91-117 (373)
361 2heh_A KIF2C protein; kinesin, 50.8 9.6 0.00033 41.1 3.7 26 157-182 125-152 (387)
362 1f9v_A Kinesin-like protein KA 50.7 8.2 0.00028 41.0 3.1 26 157-182 75-102 (347)
363 2ce7_A Cell division protein F 50.5 22 0.00074 39.5 6.7 52 126-182 11-66 (476)
364 1u0j_A DNA replication protein 50.2 27 0.00092 35.5 6.8 44 137-183 73-122 (267)
365 1wv9_A Rhodanese homolog TT165 50.0 11 0.00038 31.2 3.3 35 376-410 54-88 (94)
366 1kht_A Adenylate kinase; phosp 49.7 9 0.00031 36.0 3.0 18 165-182 3-20 (192)
367 3u06_A Protein claret segregat 49.7 11 0.00038 41.0 4.0 26 157-182 129-156 (412)
368 3fmo_B ATP-dependent RNA helic 49.6 16 0.00056 37.6 5.2 65 362-433 148-218 (300)
369 3cob_A Kinesin heavy chain-lik 49.5 9.1 0.00031 41.0 3.3 25 158-182 71-97 (369)
370 3crm_A TRNA delta(2)-isopenten 49.4 8.3 0.00028 40.5 2.9 16 167-182 7-22 (323)
371 2owm_A Nckin3-434, related to 49.3 11 0.00038 41.4 4.0 26 157-182 127-154 (443)
372 2cvh_A DNA repair and recombin 49.2 16 0.00053 35.2 4.8 22 164-185 19-40 (220)
373 3cm0_A Adenylate kinase; ATP-b 49.2 6.9 0.00023 36.8 2.1 20 164-183 3-22 (186)
374 2rep_A Kinesin-like protein KI 49.0 14 0.00047 39.7 4.6 24 158-181 107-132 (376)
375 2r8r_A Sensor protein; KDPD, P 48.5 16 0.00054 36.3 4.6 24 167-190 8-31 (228)
376 4akg_A Glutathione S-transfera 48.4 19 0.00064 48.5 6.5 49 135-184 890-942 (2695)
377 4gp7_A Metallophosphoesterase; 48.3 6.8 0.00023 36.7 1.8 20 164-183 8-27 (171)
378 4fcw_A Chaperone protein CLPB; 48.1 15 0.00052 37.6 4.7 18 166-183 48-65 (311)
379 3kb2_A SPBC2 prophage-derived 48.1 9.5 0.00033 35.1 2.8 17 167-183 3-19 (173)
380 1g8p_A Magnesium-chelatase 38 48.0 16 0.00055 38.1 5.0 19 164-182 44-62 (350)
381 1znw_A Guanylate kinase, GMP k 48.0 10 0.00035 36.6 3.1 22 161-182 16-37 (207)
382 4eun_A Thermoresistant glucoki 47.8 10 0.00035 36.4 3.1 19 164-182 28-46 (200)
383 3g5j_A Putative ATP/GTP bindin 47.6 20 0.00068 31.5 4.9 36 376-411 90-126 (134)
384 1tf7_A KAIC; homohexamer, hexa 47.5 63 0.0021 36.1 10.0 22 163-184 279-300 (525)
385 3bfn_A Kinesin-like protein KI 47.4 9.7 0.00033 41.0 3.1 24 159-182 91-116 (388)
386 2ipc_A Preprotein translocase 46.9 33 0.0011 41.0 7.5 54 374-433 119-176 (997)
387 3nwj_A ATSK2; P loop, shikimat 46.7 13 0.00043 37.6 3.6 21 163-183 46-66 (250)
388 1ly1_A Polynucleotide kinase; 46.3 11 0.00036 35.0 2.9 16 167-182 4-19 (181)
389 1u94_A RECA protein, recombina 46.1 18 0.0006 38.5 4.9 39 164-210 62-100 (356)
390 3d3q_A TRNA delta(2)-isopenten 46.1 10 0.00034 40.2 2.9 16 167-182 9-24 (340)
391 2c95_A Adenylate kinase 1; tra 45.9 13 0.00043 35.1 3.4 22 162-183 6-27 (196)
392 1s96_A Guanylate kinase, GMP k 45.8 11 0.00039 37.0 3.1 21 161-181 12-32 (219)
393 2zr9_A Protein RECA, recombina 45.7 18 0.0006 38.4 4.8 39 164-210 60-98 (349)
394 1knq_A Gluconate kinase; ALFA/ 45.5 9.9 0.00034 35.3 2.5 18 165-182 8-25 (175)
395 3t15_A Ribulose bisphosphate c 45.5 9.8 0.00034 39.2 2.7 17 166-182 37-53 (293)
396 2dhr_A FTSH; AAA+ protein, hex 45.2 30 0.001 38.6 6.8 17 166-182 65-81 (499)
397 1cr0_A DNA primase/helicase; R 45.2 16 0.00056 37.3 4.4 22 163-184 33-54 (296)
398 3dkp_A Probable ATP-dependent 44.9 8.8 0.0003 38.0 2.2 68 363-433 84-157 (245)
399 3uie_A Adenylyl-sulfate kinase 44.4 11 0.00036 36.2 2.6 20 163-182 23-42 (200)
400 3eph_A TRNA isopentenyltransfe 44.3 11 0.00036 41.0 2.7 16 167-182 4-19 (409)
401 1zuh_A Shikimate kinase; alpha 44.3 12 0.00041 34.5 2.9 19 166-184 8-26 (168)
402 3hix_A ALR3790 protein; rhodan 43.4 16 0.00053 31.2 3.3 37 374-410 51-88 (106)
403 2ius_A DNA translocase FTSK; n 43.1 18 0.00062 40.5 4.5 27 164-190 166-192 (512)
404 2v54_A DTMP kinase, thymidylat 43.1 11 0.00038 35.8 2.5 19 164-182 3-21 (204)
405 3lnc_A Guanylate kinase, GMP k 43.0 9.6 0.00033 37.5 2.0 19 164-182 26-44 (231)
406 3mm4_A Histidine kinase homolo 42.8 2.2E+02 0.0074 26.7 12.9 125 165-316 20-161 (206)
407 2k0z_A Uncharacterized protein 42.6 35 0.0012 29.1 5.5 38 373-410 54-91 (110)
408 1ry6_A Internal kinesin; kines 42.3 15 0.00052 39.1 3.6 19 164-182 82-102 (360)
409 1ak2_A Adenylate kinase isoenz 42.2 13 0.00044 36.6 2.9 20 164-183 15-34 (233)
410 3hr8_A Protein RECA; alpha and 42.0 20 0.00068 38.1 4.5 41 164-212 60-100 (356)
411 1via_A Shikimate kinase; struc 42.0 15 0.0005 34.2 3.1 18 166-183 5-22 (175)
412 3bgw_A DNAB-like replicative h 41.8 20 0.0007 39.3 4.7 38 164-209 196-233 (444)
413 1f2t_A RAD50 ABC-ATPase; DNA d 41.8 17 0.00057 33.3 3.4 16 167-182 25-40 (149)
414 1m7g_A Adenylylsulfate kinase; 41.8 19 0.00066 34.6 4.1 31 152-183 13-43 (211)
415 3kta_A Chromosome segregation 41.6 15 0.00051 34.3 3.1 16 167-182 28-43 (182)
416 2fz4_A DNA repair protein RAD2 41.5 67 0.0023 31.5 8.1 46 375-433 133-179 (237)
417 1zu4_A FTSY; GTPase, signal re 41.1 21 0.00073 37.3 4.5 20 165-184 105-124 (320)
418 3t61_A Gluconokinase; PSI-biol 41.1 14 0.00048 35.3 2.9 18 166-183 19-36 (202)
419 1tev_A UMP-CMP kinase; ploop, 40.8 13 0.00044 35.0 2.5 19 165-183 3-21 (196)
420 2bdt_A BH3686; alpha-beta prot 40.8 14 0.0005 34.7 2.9 17 166-182 3-19 (189)
421 2rhm_A Putative kinase; P-loop 40.7 13 0.00044 35.0 2.5 18 165-182 5-22 (193)
422 2bwj_A Adenylate kinase 5; pho 40.7 15 0.00051 34.7 3.0 19 164-182 11-29 (199)
423 3nhv_A BH2092 protein; alpha-b 40.6 18 0.00063 32.8 3.4 37 374-410 71-109 (144)
424 1zd8_A GTP:AMP phosphotransfer 40.5 14 0.00049 36.0 2.9 19 164-182 6-24 (227)
425 1xp8_A RECA protein, recombina 40.2 24 0.00083 37.6 4.8 39 164-210 73-111 (366)
426 1sky_E F1-ATPase, F1-ATP synth 40.1 16 0.00053 40.5 3.3 24 161-184 147-170 (473)
427 3vkg_A Dynein heavy chain, cyt 39.8 30 0.001 47.2 6.5 48 136-184 874-925 (3245)
428 3flh_A Uncharacterized protein 39.7 13 0.00045 32.7 2.3 37 374-410 70-108 (124)
429 3c8u_A Fructokinase; YP_612366 39.7 14 0.00048 35.7 2.6 19 164-182 21-39 (208)
430 2iyv_A Shikimate kinase, SK; t 39.6 18 0.00061 33.8 3.3 18 166-183 3-20 (184)
431 3fb4_A Adenylate kinase; psych 39.2 16 0.00053 35.3 2.9 18 167-184 2-19 (216)
432 2fsx_A RV0390, COG0607: rhodan 39.2 25 0.00084 31.9 4.1 37 374-410 79-116 (148)
433 1e6c_A Shikimate kinase; phosp 38.9 18 0.00061 33.3 3.2 18 166-183 3-20 (173)
434 3b6e_A Interferon-induced heli 38.9 17 0.00058 34.7 3.1 56 374-433 81-140 (216)
435 1in4_A RUVB, holliday junction 38.8 16 0.00056 38.2 3.2 17 166-182 52-68 (334)
436 1gvn_B Zeta; postsegregational 38.8 13 0.00043 38.3 2.2 17 166-182 34-50 (287)
437 3umf_A Adenylate kinase; rossm 38.6 14 0.00048 36.4 2.4 21 164-184 28-48 (217)
438 1xjc_A MOBB protein homolog; s 38.4 30 0.001 32.5 4.6 15 167-181 6-20 (169)
439 1rj9_A FTSY, signal recognitio 38.4 27 0.00092 36.2 4.7 18 165-182 102-119 (304)
440 1nks_A Adenylate kinase; therm 38.3 16 0.00055 34.2 2.8 17 167-183 3-19 (194)
441 1zak_A Adenylate kinase; ATP:A 38.3 18 0.00062 35.1 3.3 19 165-183 5-23 (222)
442 3qf7_A RAD50; ABC-ATPase, ATPa 38.3 19 0.00064 38.4 3.6 17 167-183 25-41 (365)
443 3dmn_A Putative DNA helicase; 38.2 2.4E+02 0.0082 25.9 11.4 70 361-443 48-117 (174)
444 2plr_A DTMP kinase, probable t 38.1 14 0.00048 35.2 2.4 19 164-182 3-21 (213)
445 1ye8_A Protein THEP1, hypothet 37.9 17 0.00058 34.3 2.9 16 167-182 2-17 (178)
446 1cke_A CK, MSSA, protein (cyti 37.9 17 0.00057 35.3 2.9 18 166-183 6-23 (227)
447 3dl0_A Adenylate kinase; phosp 37.9 17 0.00057 35.1 2.9 17 167-183 2-18 (216)
448 1aky_A Adenylate kinase; ATP:A 37.8 18 0.00061 35.1 3.1 19 165-183 4-22 (220)
449 3d1p_A Putative thiosulfate su 37.8 20 0.00067 32.1 3.1 37 374-410 90-127 (139)
450 2r2a_A Uncharacterized protein 37.7 19 0.00066 34.8 3.2 18 167-184 7-24 (199)
451 3p32_A Probable GTPase RV1496/ 37.6 1.6E+02 0.0053 30.8 10.7 18 167-184 81-98 (355)
452 1qf9_A UMP/CMP kinase, protein 37.5 17 0.00058 34.0 2.8 17 167-183 8-24 (194)
453 2pez_A Bifunctional 3'-phospho 37.5 16 0.00055 34.1 2.6 19 164-182 4-22 (179)
454 1tq1_A AT5G66040, senescence-a 37.4 19 0.00066 31.8 3.0 38 374-411 81-119 (129)
455 1gmx_A GLPE protein; transfera 37.2 18 0.00061 30.8 2.6 38 374-411 57-95 (108)
456 2cdn_A Adenylate kinase; phosp 37.0 19 0.00065 34.3 3.1 19 165-183 20-38 (201)
457 2i3b_A HCR-ntpase, human cance 37.0 20 0.0007 34.2 3.3 41 273-316 103-145 (189)
458 3asz_A Uridine kinase; cytidin 36.9 16 0.00054 35.1 2.5 19 164-182 5-23 (211)
459 3sr0_A Adenylate kinase; phosp 36.9 18 0.00062 35.2 2.9 18 167-184 2-19 (206)
460 3u4q_B ATP-dependent helicase/ 36.8 25 0.00085 43.7 4.9 40 168-212 4-43 (1166)
461 3b9q_A Chloroplast SRP recepto 36.6 27 0.00094 36.1 4.4 19 164-182 99-117 (302)
462 3k1j_A LON protease, ATP-depen 36.6 26 0.0009 40.0 4.7 23 160-182 55-77 (604)
463 3pxg_A Negative regulator of g 36.4 24 0.00081 39.0 4.1 20 164-183 200-219 (468)
464 1tue_A Replication protein E1; 36.2 15 0.00051 36.0 2.1 43 138-182 29-75 (212)
465 2qt1_A Nicotinamide riboside k 36.0 17 0.00057 34.9 2.5 19 164-182 20-38 (207)
466 2v9p_A Replication protein E1; 35.9 17 0.00057 37.9 2.6 18 164-181 125-142 (305)
467 2yvu_A Probable adenylyl-sulfa 35.8 18 0.0006 34.0 2.6 20 164-183 12-31 (186)
468 3tif_A Uncharacterized ABC tra 35.6 16 0.00056 36.2 2.4 18 164-181 30-47 (235)
469 1ypw_A Transitional endoplasmi 35.5 28 0.00094 41.4 4.8 19 164-182 237-255 (806)
470 2iut_A DNA translocase FTSK; n 35.5 42 0.0014 38.0 6.0 27 165-191 214-240 (574)
471 1qxn_A SUD, sulfide dehydrogen 35.1 21 0.00072 32.0 2.9 37 374-410 81-118 (137)
472 4f4c_A Multidrug resistance pr 35.0 24 0.00083 44.4 4.3 41 273-313 570-610 (1321)
473 1vee_A Proline-rich protein fa 34.9 30 0.001 30.8 3.8 37 374-410 73-110 (134)
474 2jaq_A Deoxyguanosine kinase; 34.9 20 0.00068 33.9 2.9 16 167-182 2-17 (205)
475 2hhg_A Hypothetical protein RP 34.9 21 0.00073 31.8 2.9 37 374-410 85-122 (139)
476 2wwf_A Thymidilate kinase, put 34.8 21 0.00071 34.1 3.0 20 164-183 9-28 (212)
477 2vli_A Antibiotic resistance p 34.6 18 0.00062 33.6 2.4 19 165-183 5-23 (183)
478 1nn5_A Similar to deoxythymidy 34.1 22 0.00075 34.0 3.0 20 164-183 8-27 (215)
479 2pt5_A Shikimate kinase, SK; a 34.0 22 0.00074 32.5 2.9 16 167-182 2-17 (168)
480 3tlx_A Adenylate kinase 2; str 34.0 27 0.00093 34.6 3.8 21 164-184 28-48 (243)
481 1ukz_A Uridylate kinase; trans 34.0 21 0.00073 33.9 2.9 17 166-182 16-32 (203)
482 4e22_A Cytidylate kinase; P-lo 34.0 22 0.00074 35.6 3.0 19 164-182 26-44 (252)
483 3be4_A Adenylate kinase; malar 33.7 22 0.00075 34.4 3.0 19 165-183 5-23 (217)
484 3auy_A DNA double-strand break 33.5 24 0.00082 37.5 3.5 23 168-190 28-50 (371)
485 2if2_A Dephospho-COA kinase; a 33.1 22 0.00074 33.9 2.8 19 168-186 4-22 (204)
486 1jjv_A Dephospho-COA kinase; P 33.0 22 0.00077 33.9 2.9 19 168-186 5-23 (206)
487 1e4v_A Adenylate kinase; trans 32.7 22 0.00076 34.3 2.8 19 168-186 3-21 (214)
488 1uf9_A TT1252 protein; P-loop, 32.6 22 0.00076 33.6 2.8 19 168-186 11-29 (203)
489 1w36_B RECB, exodeoxyribonucle 32.6 64 0.0022 40.0 7.6 59 165-223 16-78 (1180)
490 3f9v_A Minichromosome maintena 32.5 18 0.00063 41.3 2.4 27 156-182 304-344 (595)
491 3qks_A DNA double-strand break 32.4 27 0.00093 33.6 3.4 22 168-191 26-47 (203)
492 2pbr_A DTMP kinase, thymidylat 32.3 24 0.00081 33.0 2.9 19 168-186 3-21 (195)
493 2z0h_A DTMP kinase, thymidylat 32.2 24 0.00082 33.2 2.9 19 168-186 3-21 (197)
494 1g41_A Heat shock protein HSLU 32.2 25 0.00087 38.5 3.4 23 164-186 49-71 (444)
495 2cbz_A Multidrug resistance-as 32.1 20 0.00069 35.6 2.4 19 164-182 30-48 (237)
496 1q57_A DNA primase/helicase; d 32.0 21 0.00072 39.7 2.8 39 162-208 239-278 (503)
497 2og2_A Putative signal recogni 32.0 35 0.0012 36.3 4.4 36 164-207 156-191 (359)
498 4h1g_A Maltose binding protein 32.0 30 0.001 40.5 4.2 28 156-183 452-481 (715)
499 2bbw_A Adenylate kinase 4, AK4 31.9 25 0.00086 34.7 3.1 23 164-186 26-48 (246)
500 1np6_A Molybdopterin-guanine d 31.6 30 0.001 32.6 3.4 22 168-190 9-30 (174)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.8e-58 Score=521.86 Aligned_cols=352 Identities=35% Similarity=0.558 Sum_probs=323.4
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCC
Q psy17912 123 VPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGP 202 (779)
Q Consensus 123 ~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 202 (779)
.|.|+.+|++++|++.+++.+.++||.+|+|+|+++||.+++|+|++++||||||||++|++|++.++...+......++
T Consensus 51 ~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~ 130 (434)
T 2db3_A 51 VPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRP 130 (434)
T ss_dssp CCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCC
T ss_pred CCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999998876543445578
Q ss_pred EEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEc
Q psy17912 203 IVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLD 282 (779)
Q Consensus 203 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViD 282 (779)
++||++||++||.|+++.+++++...++++.+++|+.....+...+..+++|+|+||++|++++......+.++++||||
T Consensus 131 ~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlD 210 (434)
T 2db3_A 131 QVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLD 210 (434)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEE
T ss_pred cEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEc
Confidence 99999999999999999999999888999999999999888888888889999999999999998888889999999999
Q ss_pred cchhhhcCCchHHHHHHHhhc--CCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchh
Q psy17912 283 EADRMLDMGFEPQIRKIIGQI--RPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKD 360 (779)
Q Consensus 283 EaH~l~~~~f~~~l~~il~~l--~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~ 360 (779)
|||+|++++|...+..++..+ +++.|+++||||+|+.++.++..++.++..+.++... .....+.+.+..+....|.
T Consensus 211 Eah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~i~~~~~~~~~~~k~ 289 (434)
T 2db3_A 211 EADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVG-GACSDVKQTIYEVNKYAKR 289 (434)
T ss_dssp THHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTT-CCCTTEEEEEEECCGGGHH
T ss_pred cHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccc-ccccccceEEEEeCcHHHH
Confidence 999999999999999999875 6789999999999999999999999999988887655 3455677777778777888
Q ss_pred HHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccc
Q psy17912 361 YKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQER 440 (779)
Q Consensus 361 ~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GID 440 (779)
..|.+++... ..++||||++++.|+.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|||
T Consensus 290 ~~l~~~l~~~----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlD 365 (434)
T 2db3_A 290 SKLIEILSEQ----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLD 365 (434)
T ss_dssp HHHHHHHHHC----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCC
T ss_pred HHHHHHHHhC----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCC
Confidence 8888877753 345999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcC
Q psy17912 441 DRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKS 488 (779)
Q Consensus 441 ip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~ 488 (779)
+|+++ +||+|++|.++.+|+||+||+||.|..+.++...
T Consensus 366 i~~v~---------~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~ 404 (434)
T 2db3_A 366 IKNIK---------HVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFF 404 (434)
T ss_dssp CTTCC---------EEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred cccCC---------EEEEECCCCCHHHHHHHhcccccCCCCCEEEEEE
Confidence 99998 9999999999999999999999999888666543
No 2
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.3e-53 Score=476.39 Aligned_cols=356 Identities=39% Similarity=0.599 Sum_probs=313.8
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCC------
Q psy17912 123 VPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPL------ 196 (779)
Q Consensus 123 ~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~------ 196 (779)
.|+|+.+|+++++++.+.+.|..+||..|+|+|.++++.+++++|+++++|||+|||++|++|++..+......
T Consensus 10 ~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~ 89 (417)
T 2i4i_A 10 CPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAM 89 (417)
T ss_dssp CCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999887654311
Q ss_pred -------CCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcC
Q psy17912 197 -------RSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQG 269 (779)
Q Consensus 197 -------~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~ 269 (779)
....++++||++||++|+.|+++.+++++...++++..++|+.....+...+..+++|+|+||++|.+.+..+
T Consensus 90 ~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~ 169 (417)
T 2i4i_A 90 KENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERG 169 (417)
T ss_dssp HHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT
T ss_pred ccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcC
Confidence 1223478999999999999999999999888899999999999888888888888999999999999999888
Q ss_pred CcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc--CC--CCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCcc
Q psy17912 270 TINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI--RP--DRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANH 345 (779)
Q Consensus 270 ~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l--~~--~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~ 345 (779)
...+..+++|||||||++.+++|...+..++... ++ ..|++++|||+++.+..++..++.++..+.+.... ....
T Consensus 170 ~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 248 (417)
T 2i4i_A 170 KIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG-STSE 248 (417)
T ss_dssp SBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CCS
T ss_pred CcChhhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-CCcc
Confidence 8889999999999999999999999999998753 32 67999999999999999999999988877776544 3445
Q ss_pred ceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCC
Q psy17912 346 NIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGR 425 (779)
Q Consensus 346 ~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~ 425 (779)
.+.+.+..+....+...+..++... ....++||||++++.++.+++.|...++.+..+||++++++|..+++.|++|+
T Consensus 249 ~i~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~ 326 (417)
T 2i4i_A 249 NITQKVVWVEESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGK 326 (417)
T ss_dssp SEEEEEEECCGGGHHHHHHHHHHTC--CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTS
T ss_pred CceEEEEEeccHhHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCC
Confidence 6777777777777877788877753 25688999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChH
Q psy17912 426 ASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQ 490 (779)
Q Consensus 426 ~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~ 490 (779)
.+|||||+++++|+|+|.++ +||+|++|.+..+|+||+||+||.|..+.++....+
T Consensus 327 ~~vlvaT~~~~~Gidip~v~---------~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~ 382 (417)
T 2i4i_A 327 SPILVATAVAARGLDISNVK---------HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNE 382 (417)
T ss_dssp SCEEEECHHHHTTSCCCCEE---------EEEESSCCSSHHHHHHHHTTBCC--CCEEEEEEECG
T ss_pred CCEEEECChhhcCCCcccCC---------EEEEEcCCCCHHHHHHhcCccccCCCCceEEEEEcc
Confidence 99999999999999999988 999999999999999999999999987766654433
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5.5e-52 Score=464.51 Aligned_cols=356 Identities=27% Similarity=0.425 Sum_probs=313.8
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCC
Q psy17912 123 VPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGP 202 (779)
Q Consensus 123 ~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 202 (779)
.+.+..+|+++++++.+.+.+.++||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++
T Consensus 32 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~ 106 (410)
T 2j0s_A 32 EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRET 106 (410)
T ss_dssp TCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCSC
T ss_pred CccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCCc
Confidence 44567789999999999999999999999999999999999999999999999999999999999876432 2356
Q ss_pred EEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEc
Q psy17912 203 IVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLD 282 (779)
Q Consensus 203 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViD 282 (779)
++||++||++|+.|+.+.+.+++...++.+..++|+.....+...+..+++|+|+||++|.+.+......+..+++||||
T Consensus 107 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViD 186 (410)
T 2j0s_A 107 QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD 186 (410)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEc
Confidence 89999999999999999999999888999999999998888878887889999999999999998888888999999999
Q ss_pred cchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEecccc-chhH
Q psy17912 283 EADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEH-EKDY 361 (779)
Q Consensus 283 EaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~-~k~~ 361 (779)
|||++.+++|...+..++..++++.|++++|||+++.+..++..++.++..+.+..... ....+.+.+..+... .+..
T Consensus 187 Eah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~k~~ 265 (410)
T 2j0s_A 187 EADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDEL-TLEGIKQFFVAVEREEWKFD 265 (410)
T ss_dssp THHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGC-SCTTEEEEEEEESSTTHHHH
T ss_pred cHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccc-cCCCceEEEEEeCcHHhHHH
Confidence 99999999999999999999999999999999999999888888888888877655442 334555555555443 3666
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERD 441 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDi 441 (779)
.+..++... ...++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 266 ~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 342 (410)
T 2j0s_A 266 TLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDV 342 (410)
T ss_dssp HHHHHHHHH---TSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCC
T ss_pred HHHHHHHhc---CCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCc
Confidence 777777654 45799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHH
Q psy17912 442 RVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVL 496 (779)
Q Consensus 442 p~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l 496 (779)
|.++ +||+|+.|.+...|+||+||+||.|..+.++....++....+
T Consensus 343 ~~v~---------~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 388 (410)
T 2j0s_A 343 PQVS---------LIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRIL 388 (410)
T ss_dssp TTEE---------EEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHH
T ss_pred ccCC---------EEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHHHHHHH
Confidence 9988 999999999999999999999999988866665444443333
No 4
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=4e-50 Score=447.73 Aligned_cols=355 Identities=26% Similarity=0.412 Sum_probs=310.2
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCE
Q psy17912 124 PRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPI 203 (779)
Q Consensus 124 p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 203 (779)
..+..+|+++++++.+.+.+.+.||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..+++
T Consensus 17 ~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 91 (400)
T 1s2m_A 17 NTKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQ 91 (400)
T ss_dssp ----CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCC
T ss_pred ccccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCcc
Confidence 3445789999999999999999999999999999999999999999999999999999999999876542 23568
Q ss_pred EEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEcc
Q psy17912 204 VLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDE 283 (779)
Q Consensus 204 vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDE 283 (779)
+||++|+++|+.|+.+.++++....++.+..++|+.....+...+...++|+|+||++|.+.+......+.++++|||||
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDE 171 (400)
T 1s2m_A 92 ALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDE 171 (400)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEES
T ss_pred EEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeC
Confidence 99999999999999999999998889999999999887776666777899999999999999988777899999999999
Q ss_pred chhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHH
Q psy17912 284 ADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKL 363 (779)
Q Consensus 284 aH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L 363 (779)
||++.+.+|...+..++..+++..|++++|||+|..+..++..++..+..+..... .....+.+.+.......+...+
T Consensus 172 aH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~~l 249 (400)
T 1s2m_A 172 ADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LTLKGITQYYAFVEERQKLHCL 249 (400)
T ss_dssp HHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSS--CBCTTEEEEEEECCGGGHHHHH
T ss_pred chHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccc--cccCCceeEEEEechhhHHHHH
Confidence 99999888888999999998889999999999999999999999888877665433 2345566677777777777777
Q ss_pred HHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCc
Q psy17912 364 QGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRV 443 (779)
Q Consensus 364 ~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~ 443 (779)
..++... ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|.
T Consensus 250 ~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~ 326 (400)
T 1s2m_A 250 NTLFSKL---QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQA 326 (400)
T ss_dssp HHHHHHS---CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTT
T ss_pred HHHHhhc---CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccC
Confidence 7777653 5679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHH
Q psy17912 444 LNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLN 497 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~ 497 (779)
++ +||+|++|.+..+|+||+||+||.|..+.++....++....+.
T Consensus 327 ~~---------~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~~ 371 (400)
T 1s2m_A 327 VN---------VVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWNDRFNLY 371 (400)
T ss_dssp EE---------EEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHHH
T ss_pred CC---------EEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccchHHHHH
Confidence 88 9999999999999999999999999887666654444333333
No 5
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1.5e-50 Score=452.81 Aligned_cols=347 Identities=29% Similarity=0.448 Sum_probs=291.9
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCC
Q psy17912 123 VPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGP 202 (779)
Q Consensus 123 ~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 202 (779)
.+.+..+|+++++++.+.+.+.+++|..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++
T Consensus 35 ~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~ 109 (414)
T 3eiq_A 35 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LKAT 109 (414)
T ss_dssp CCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SCSC
T ss_pred ccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CCce
Confidence 45567889999999999999999999999999999999999999999999999999999999999876542 2356
Q ss_pred EEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhh-cCCeEEEeChHHHHHHHHcCCcCCCCeeEEEE
Q psy17912 203 IVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQ-TGAEIVIATPGRLIDYLEQGTINLHRTSYLVL 281 (779)
Q Consensus 203 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~-~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lVi 281 (779)
++||++|+++|+.|+.+.+++++...+..+..++|+.....+...+. .+++|+|+||++|.+.+......+..+++|||
T Consensus 110 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vVi 189 (414)
T 3eiq_A 110 QALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVL 189 (414)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEE
T ss_pred eEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEE
Confidence 89999999999999999999999888999999999988776666655 66899999999999999888888899999999
Q ss_pred ccchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEecc-ccchh
Q psy17912 282 DEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQ-EHEKD 360 (779)
Q Consensus 282 DEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~-~~~k~ 360 (779)
||||++.+++|...+..++..++++.|+++||||+++.+..+...++.++..+......... ..+.+.+.... ...+.
T Consensus 190 DEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 268 (414)
T 3eiq_A 190 DEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTL-EGIRQFYINVEREEWKL 268 (414)
T ss_dssp CSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCT-TSCCEEEEECSSSTTHH
T ss_pred ECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCC-CCceEEEEEeChHHhHH
Confidence 99999999999999999999999999999999999999999999999998888776655333 33444444333 33455
Q ss_pred HHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccc
Q psy17912 361 YKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQER 440 (779)
Q Consensus 361 ~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GID 440 (779)
..+..++.. ...+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|
T Consensus 269 ~~l~~~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gid 345 (414)
T 3eiq_A 269 DTLCDLYET---LTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGID 345 (414)
T ss_dssp HHHHHHHHS---SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CC
T ss_pred HHHHHHHHh---CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCC
Confidence 666666554 35679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEc
Q psy17912 441 DRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNK 487 (779)
Q Consensus 441 ip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~ 487 (779)
+|.++ +||+|+.|.+..+|+||+||+||.|..+.++..
T Consensus 346 ip~v~---------~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~ 383 (414)
T 3eiq_A 346 VQQVS---------LVINYDLPTNRENYIHRIGRGGRFGRKGVAINM 383 (414)
T ss_dssp GGGCS---------CEEESSCCSSTHHHHHHSCCC-------CEEEE
T ss_pred ccCCC---------EEEEeCCCCCHHHhhhhcCcccCCCCCceEEEE
Confidence 99998 899999999999999999999999866644443
No 6
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=1.7e-50 Score=471.79 Aligned_cols=352 Identities=26% Similarity=0.338 Sum_probs=286.3
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh--cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHH
Q psy17912 135 FPPYIMKKIYEMGFQAPTAIQAQGWPIAL--SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRE 212 (779)
Q Consensus 135 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~ 212 (779)
|++.+++.+.++||..|+|+|.++++.++ .++|++++||||+|||++|++|++..+...... ...++++|||+||++
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 678999999999999999999999998875422 234578999999999
Q ss_pred HHHHHHHHHHHhccc----CCceEEEEeCCCCChhhHHHh-hcCCeEEEeChHHHHHHHHcC-CcCCCCeeEEEEccchh
Q psy17912 213 LAQQIETVANDFGSA----TATRVACVFGGAPKGPQVKAL-QTGAEIVIATPGRLIDYLEQG-TINLHRTSYLVLDEADR 286 (779)
Q Consensus 213 La~Q~~~~~~~~~~~----~~l~v~~~~gg~~~~~~~~~l-~~~~~IiV~Tpe~Ll~~l~~~-~~~l~~i~~lViDEaH~ 286 (779)
||.|+++.++++... ..+.+..++|+.....+...+ ..+++|+|+||++|++++... ...++.+++|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999987432 246688888888776666655 447899999999999988664 23578899999999999
Q ss_pred hhcCCchHHHHHHHhhc-------CCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCC---CCCccceEEEEEeccc
Q psy17912 287 MLDMGFEPQIRKIIGQI-------RPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLN---PTANHNIVQIVDVCQE 356 (779)
Q Consensus 287 l~~~~f~~~l~~il~~l-------~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~---~~~~~~i~~~~~~~~~ 356 (779)
+++++|...+..++..+ .++.|+++||||+++.+..++..++.++..+.+.... ......+.+.+.....
T Consensus 238 l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (563)
T 3i5x_A 238 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 317 (563)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred HhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceEEEECch
Confidence 99999999999887665 2377999999999999999999888877665543222 2233445554444432
Q ss_pred c-chh-HHHHHHHHHhcc-CCCCcEEEEecchhHHHHHHHHHHhC---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q psy17912 357 H-EKD-YKLQGLLSQIGS-ERTSKTIIFVETKRKADDITRSVRNK---GWAAVAIHGNKSQQERDRVLNEFRIGRASILV 430 (779)
Q Consensus 357 ~-~k~-~~L~~ll~~i~~-~~~~kvLVF~~s~~~ae~L~~~L~~~---g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILV 430 (779)
. .+. ..+..+...+.. ....++||||+++..|+.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 318 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLv 397 (563)
T 3i5x_A 318 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397 (563)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhcCCCCEEE
Confidence 2 222 223333333322 45789999999999999999999986 89999999999999999999999999999999
Q ss_pred EecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHH
Q psy17912 431 SQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVL 496 (779)
Q Consensus 431 AT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l 496 (779)
||+++++|||+|.++ +||+|+.|.++.+|+||+||+||.|..+.++....+.....+
T Consensus 398 aT~~~~~GiDip~v~---------~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~e~~~~ 454 (563)
T 3i5x_A 398 CTDVGARGMDFPNVH---------EVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKDELPFV 454 (563)
T ss_dssp ECGGGTSSCCCTTCC---------EEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGGGHHHH
T ss_pred EcchhhcCCCcccCC---------EEEEECCCCchhhhhhhcCccccCCCCceEEEEEchhHHHHH
Confidence 999999999999998 999999999999999999999999977755544333333333
No 7
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=1.3e-49 Score=441.75 Aligned_cols=344 Identities=25% Similarity=0.387 Sum_probs=305.4
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE
Q psy17912 128 QHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL 207 (779)
Q Consensus 128 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil 207 (779)
.+|+++++++.+.+.|.++||..|+|+|.++++.+++++++++.+|||+|||++|++|++..+... ..++++||+
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 468999999999999999999999999999999999999999999999999999999999876442 235689999
Q ss_pred ccCHHHHHHHHHHHHHhcccC-CceEEEEeCCCCChhhHHHhhc-CCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch
Q psy17912 208 APTRELAQQIETVANDFGSAT-ATRVACVFGGAPKGPQVKALQT-GAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD 285 (779)
Q Consensus 208 ~Ptr~La~Q~~~~~~~~~~~~-~l~v~~~~gg~~~~~~~~~l~~-~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH 285 (779)
+|+++|+.|+.+.++++.... ++++..++|+.........+.. .++|+|+||++|.+.+......+.++++|||||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999998765 7889999998887666655554 47999999999999998877789999999999999
Q ss_pred hhhcC-CchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHH
Q psy17912 286 RMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQ 364 (779)
Q Consensus 286 ~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~ 364 (779)
++.++ ++...+..++...++..|++++|||+++.+..++..++.++..+.+..........+.+.+.......+...+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 242 (391)
T 1xti_A 163 KMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLF 242 (391)
T ss_dssp HHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHH
T ss_pred HHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHH
Confidence 99874 68888889998888899999999999999999999999998888776655445556677777777777777788
Q ss_pred HHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcc
Q psy17912 365 GLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVL 444 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v 444 (779)
.++... ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+|.+
T Consensus 243 ~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 319 (391)
T 1xti_A 243 DLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV 319 (391)
T ss_dssp HHHHHS---CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTE
T ss_pred HHHHhc---CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccC
Confidence 777754 56899999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcC
Q psy17912 445 NEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKS 488 (779)
Q Consensus 445 ~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~ 488 (779)
+ +||+|+.|.+..+|+||+||+||.|..+.++...
T Consensus 320 ~---------~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 354 (391)
T 1xti_A 320 N---------IAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 354 (391)
T ss_dssp E---------EEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEE
T ss_pred C---------EEEEeCCCCCHHHHHHhcccccCCCCceEEEEEE
Confidence 8 9999999999999999999999999777555543
No 8
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=5.6e-49 Score=439.47 Aligned_cols=348 Identities=25% Similarity=0.384 Sum_probs=296.9
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCC
Q psy17912 121 KCVPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSG--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRS 198 (779)
Q Consensus 121 ~~~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~ 198 (779)
...+.++.+|+++++++.+.+.+.++||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+...
T Consensus 18 ~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~----- 92 (412)
T 3fht_A 18 NSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA----- 92 (412)
T ss_dssp TSTTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----
T ss_pred CCCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----
Confidence 334567889999999999999999999999999999999999987 9999999999999999999999877542
Q ss_pred CCCCEEEEEccCHHHHHHHHHHHHHhcccC-CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHc-CCcCCCCe
Q psy17912 199 GEGPIVLVLAPTRELAQQIETVANDFGSAT-ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQ-GTINLHRT 276 (779)
Q Consensus 199 ~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~-~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~-~~~~l~~i 276 (779)
..++++||++|+++|+.|+.+.++++.... ++.+....++....... ...++|+|+||++|.+++.. ....+.++
T Consensus 93 ~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ivv~T~~~l~~~~~~~~~~~~~~~ 169 (412)
T 3fht_A 93 NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKI 169 (412)
T ss_dssp SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCSSCGGGC
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh---cCCCCEEEECchHHHHHHHhcCCcChhhC
Confidence 245689999999999999999999987764 67777777776544321 34579999999999999865 45677899
Q ss_pred eEEEEccchhhhc-CCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEecc
Q psy17912 277 SYLVLDEADRMLD-MGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQ 355 (779)
Q Consensus 277 ~~lViDEaH~l~~-~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~ 355 (779)
++|||||||++.+ .++...+..++..++++.|++++|||+++.+..++..++.++..+.+...... ...+.+.+....
T Consensus 170 ~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 248 (412)
T 3fht_A 170 KVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEET-LDTIKQYYVLCS 248 (412)
T ss_dssp CEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSS-CTTEEEEEEECS
T ss_pred cEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecccccc-ccCceEEEEEcC
Confidence 9999999999987 67888888999999999999999999999999999999999888877655433 344555444443
Q ss_pred -ccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy17912 356 -EHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYN 434 (779)
Q Consensus 356 -~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v 434 (779)
...+...+..++... ..+++||||++++.++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||++
T Consensus 249 ~~~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~ 325 (412)
T 3fht_A 249 SRDEKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV 325 (412)
T ss_dssp SHHHHHHHHHHHHHHH---SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG
T ss_pred ChHHHHHHHHHHHhhc---CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc
Confidence 334555566655543 5679999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCcccccccccceeEEEEcCCC------CCHHHHHHHhccCCCCCCeEEEEEcCh
Q psy17912 435 KSQQERDRVLNEFRIGRASILVSQYKES------QQKRDRVLNEFRIGRASILVSHYNKSQ 489 (779)
Q Consensus 435 ~~~GIDip~v~~~~~~~~~~~VI~y~~p------~s~~~yiQR~GRaGR~g~~~~~~~~~~ 489 (779)
+++|+|+|.++ +||+|+.| .+..+|+||+||+||.|..+.++....
T Consensus 326 ~~~Gidip~~~---------~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~ 377 (412)
T 3fht_A 326 CARGIDVEQVS---------VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 377 (412)
T ss_dssp GTSSCCCTTEE---------EEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEEC
T ss_pred cccCCCccCCC---------EEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEc
Confidence 99999999988 99999999 578999999999999998776665443
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=7.9e-49 Score=435.14 Aligned_cols=341 Identities=27% Similarity=0.436 Sum_probs=293.5
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCE
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSG--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPI 203 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 203 (779)
...+|+++++++.+.+.+.+.||..|+|+|.++++.++++ +++++++|||+|||++|++|++..+... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 4578999999999999999999999999999999999988 8999999999999999999999876542 24668
Q ss_pred EEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEcc
Q psy17912 204 VLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDE 283 (779)
Q Consensus 204 vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDE 283 (779)
+||++|+++|+.|+.+.+++++...++.+....++...... ..+++|+|+||++|.+.+......+.++++|||||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999998888888888877654322 33589999999999999988888899999999999
Q ss_pred chhhhc-CCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEec-cccchhH
Q psy17912 284 ADRMLD-MGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVC-QEHEKDY 361 (779)
Q Consensus 284 aH~l~~-~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~-~~~~k~~ 361 (779)
||++.+ .++...+..+...++++.|++++|||+++.+..+...++.++..+........ ...+.+.+... ....+..
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 232 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVN-VDAIKQLYMDCKNEADKFD 232 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCS-CTTEEEEEEECSSHHHHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccc-cccccEEEEEcCchHHHHH
Confidence 999888 67888899999999899999999999999999999999988877766554432 33444444433 2333444
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERD 441 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDi 441 (779)
.+..++. ....+++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 233 ~l~~~~~---~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi 309 (395)
T 3pey_A 233 VLTELYG---LMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDI 309 (395)
T ss_dssp HHHHHHT---TTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCC
T ss_pred HHHHHHH---hccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCc
Confidence 4444443 3356899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccceeEEEEcCCCC------CHHHHHHHhccCCCCCCeEEEEEcC
Q psy17912 442 RVLNEFRIGRASILVSQYKESQ------QKRDRVLNEFRIGRASILVSHYNKS 488 (779)
Q Consensus 442 p~v~~~~~~~~~~~VI~y~~p~------s~~~yiQR~GRaGR~g~~~~~~~~~ 488 (779)
|.++ +||+|+.|. ++.+|+||+||+||.|..+.++...
T Consensus 310 p~~~---------~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 353 (395)
T 3pey_A 310 PTVS---------MVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFV 353 (395)
T ss_dssp TTEE---------EEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred ccCC---------EEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEE
Confidence 9988 999999999 9999999999999999877665543
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=2.2e-48 Score=427.14 Aligned_cols=336 Identities=34% Similarity=0.524 Sum_probs=295.4
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC-CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEE
Q psy17912 127 IQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSG-CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVL 205 (779)
Q Consensus 127 i~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g-~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vL 205 (779)
..+|+++++++.+.+.+.+.||.+|+|+|.++++.++++ +++++.+|||+|||++|++|++..+... .++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~------~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNEN------NGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSS------SSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhccc------CCCcEE
Confidence 357999999999999999999999999999999999988 6999999999999999999998876542 366899
Q ss_pred EEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch
Q psy17912 206 VLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD 285 (779)
Q Consensus 206 il~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH 285 (779)
|++|+++|+.|+.+.+.++....++.+..++|+.....+...+. .++|+|+||++|.+.+......+.++++|||||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998888889999999887766655554 58999999999999998887889999999999999
Q ss_pred hhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHH
Q psy17912 286 RMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQG 365 (779)
Q Consensus 286 ~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 365 (779)
++.+++|...+..++..++++.+++++|||+++....+...++.++..+..... ..+.+.+.......+...+..
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~ 232 (367)
T 1hv8_A 158 EMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAKIN-----ANIEQSYVEVNENERFEALCR 232 (367)
T ss_dssp HHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECCSS-----SSSEEEEEECCGGGHHHHHHH
T ss_pred HhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEecCC-----CCceEEEEEeChHHHHHHHHH
Confidence 999999999999999999899999999999999999999888887766654322 244555555555555555555
Q ss_pred HHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccc
Q psy17912 366 LLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLN 445 (779)
Q Consensus 366 ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~ 445 (779)
++. ....++||||++++.++.+++.|++.++.+..+||+++..+|..+++.|++|+.+|||||+++++|+|+|.++
T Consensus 233 ~l~----~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 233 LLK----NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp HHC----STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred HHh----cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 443 4578999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEc
Q psy17912 446 EFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNK 487 (779)
Q Consensus 446 ~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~ 487 (779)
+||+|+.|.++.+|+||+||+||.|..+.++..
T Consensus 309 ---------~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~ 341 (367)
T 1hv8_A 309 ---------CVINYHLPQNPESYMHRIGRTGRAGKKGKAISI 341 (367)
T ss_dssp ---------EEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEE
T ss_pred ---------EEEEecCCCCHHHhhhcccccccCCCccEEEEE
Confidence 999999999999999999999999866644443
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=4.9e-50 Score=445.32 Aligned_cols=356 Identities=29% Similarity=0.435 Sum_probs=190.0
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCC
Q psy17912 123 VPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGP 202 (779)
Q Consensus 123 ~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 202 (779)
..+++.+|+++++++.+.+.+..+||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 55677889999999999999999999999999999999999999999999999999999999999876542 2466
Q ss_pred EEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEc
Q psy17912 203 IVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLD 282 (779)
Q Consensus 203 ~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViD 282 (779)
++||++|+++|+.|+.+.+.++....++++..++|+.........+. +++|+|+||++|.+.+......+.++++||+|
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 89999999999999999999999888999999999988766655554 47999999999999998877788999999999
Q ss_pred cchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccc-cchhH
Q psy17912 283 EADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQE-HEKDY 361 (779)
Q Consensus 283 EaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~-~~k~~ 361 (779)
|||++.+++|...+..++..+++..|++++|||+++.+..+...++.++..+........ ...+.+.+..... ..+..
T Consensus 170 Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 248 (394)
T 1fuu_A 170 EADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELT-LEGIKQFYVNVEEEEYKYE 248 (394)
T ss_dssp THHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC------------------------
T ss_pred ChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCcccc-CCCceEEEEEcCchhhHHH
Confidence 999999999999999999999999999999999999999999999988888776554322 2233333332222 22445
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERD 441 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDi 441 (779)
.+..++... ..+++||||++++.++.+++.|+..++.+..+||++++.+|..+++.|++|+.+|||||+++++|+|+
T Consensus 249 ~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi 325 (394)
T 1fuu_A 249 CLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV 325 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhcC---CCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCc
Confidence 555555432 46789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHH
Q psy17912 442 RVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLN 497 (779)
Q Consensus 442 p~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~ 497 (779)
|.++ +||+|+.|.+..+|+||+||+||.|..+.++....++....+.
T Consensus 326 ~~~~---------~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~ 372 (394)
T 1fuu_A 326 QQVS---------LVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNEDVGAMR 372 (394)
T ss_dssp --------------------------------------------------------
T ss_pred ccCC---------EEEEeCCCCCHHHHHHHcCcccCCCCCceEEEEEchhHHHHHH
Confidence 9998 9999999999999999999999999777666655544433333
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.1e-48 Score=457.87 Aligned_cols=347 Identities=27% Similarity=0.341 Sum_probs=286.4
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh--cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHH
Q psy17912 135 FPPYIMKKIYEMGFQAPTAIQAQGWPIAL--SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRE 212 (779)
Q Consensus 135 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~ 212 (779)
|++.+++.+.++||..|+|+|.++++.++ .+++++++||||+|||++|++|++..+...... ...++++|||+||++
T Consensus 28 l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lvl~Ptr~ 106 (579)
T 3sqw_A 28 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 106 (579)
T ss_dssp SCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhcccc-ccCCCeEEEEcchHH
Confidence 99999999999999999999999999999 788999999999999999999999988775321 234678999999999
Q ss_pred HHHHHHHHHHHhcc----cCCceEEEEeCCCCChhhHHHhh-cCCeEEEeChHHHHHHHHcC-CcCCCCeeEEEEccchh
Q psy17912 213 LAQQIETVANDFGS----ATATRVACVFGGAPKGPQVKALQ-TGAEIVIATPGRLIDYLEQG-TINLHRTSYLVLDEADR 286 (779)
Q Consensus 213 La~Q~~~~~~~~~~----~~~l~v~~~~gg~~~~~~~~~l~-~~~~IiV~Tpe~Ll~~l~~~-~~~l~~i~~lViDEaH~ 286 (779)
|+.|+.+.++++.. ...+.+..++|+.....+...+. .+++|+|+||++|++++... ...+..+++|||||||+
T Consensus 107 La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 186 (579)
T 3sqw_A 107 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 186 (579)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHH
Confidence 99999999998753 23567888889888776666664 47899999999999988764 34578899999999999
Q ss_pred hhcCCchHHHHHHHhhcC-------CCCceEEeeccccHHHHHHHHHhccCcEEEecCCC---CCCCccceEEEEEeccc
Q psy17912 287 MLDMGFEPQIRKIIGQIR-------PDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSL---NPTANHNIVQIVDVCQE 356 (779)
Q Consensus 287 l~~~~f~~~l~~il~~l~-------~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~---~~~~~~~i~~~~~~~~~ 356 (779)
+++++|...+..++..++ ++.|+++||||+++.+..++..++.++..+.+... .......+.+.+.....
T Consensus 187 l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 266 (579)
T 3sqw_A 187 LLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEK 266 (579)
T ss_dssp HTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESS
T ss_pred hhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccccceEEEEecc
Confidence 999999999998877653 37799999999999999999999888766554332 22333445554444433
Q ss_pred c-c-hhHHHHHHHHHhcc-CCCCcEEEEecchhHHHHHHHHHHhC---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEE
Q psy17912 357 H-E-KDYKLQGLLSQIGS-ERTSKTIIFVETKRKADDITRSVRNK---GWAAVAIHGNKSQQERDRVLNEFRIGRASILV 430 (779)
Q Consensus 357 ~-~-k~~~L~~ll~~i~~-~~~~kvLVF~~s~~~ae~L~~~L~~~---g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILV 430 (779)
. . ....+..+...+.. ....++||||+++..|+.+++.|... ++.+..+||+|++.+|..+++.|++|+.+|||
T Consensus 267 ~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLV 346 (579)
T 3sqw_A 267 FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346 (579)
T ss_dssp TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEE
T ss_pred hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEE
Confidence 2 1 22233333333322 45789999999999999999999986 89999999999999999999999999999999
Q ss_pred EecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHH
Q psy17912 431 SQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQE 491 (779)
Q Consensus 431 AT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e 491 (779)
||+++++|||+|.++ +||+|++|.++..|+||+||+||.|..+.++....++
T Consensus 347 aT~~~~~GiDip~v~---------~VI~~~~p~s~~~y~Qr~GRagR~g~~g~~i~~~~~~ 398 (579)
T 3sqw_A 347 CTDVGARGMDFPNVH---------EVLQIGVPSELANYIHRIGRTARSGKEGSSVLFICKD 398 (579)
T ss_dssp ECGGGTSSCCCTTCC---------EEEEESCCSSTTHHHHHHTTSSCTTCCEEEEEEEEGG
T ss_pred EcchhhcCCCcccCC---------EEEEcCCCCCHHHhhhhccccccCCCCceEEEEEccc
Confidence 999999999999998 9999999999999999999999999777555543333
No 13
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=4e-49 Score=451.06 Aligned_cols=344 Identities=25% Similarity=0.385 Sum_probs=177.6
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCC
Q psy17912 125 RPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSG--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGP 202 (779)
Q Consensus 125 ~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 202 (779)
.++.+|.+++|++.+++.+.++||..|+|+|.++++.++++ ++++++||||||||++|++|++..+... ..++
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~ 163 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYP 163 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSC
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCC
Confidence 45688999999999999999999999999999999999987 8999999999999999999999776542 2456
Q ss_pred EEEEEccCHHHHHHHHHHHHHhcccC-CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHc-CCcCCCCeeEEE
Q psy17912 203 IVLVLAPTRELAQQIETVANDFGSAT-ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQ-GTINLHRTSYLV 280 (779)
Q Consensus 203 ~vLil~Ptr~La~Q~~~~~~~~~~~~-~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~-~~~~l~~i~~lV 280 (779)
++|||+||++|+.|+.+.++++.... ++.+....++....... ...++|+|+||++|++++.. ..+.+.++++||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc---cCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 89999999999999999999987653 56777777766543221 33578999999999999865 446788999999
Q ss_pred Eccchhhhc-CCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccc-cc
Q psy17912 281 LDEADRMLD-MGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQE-HE 358 (779)
Q Consensus 281 iDEaH~l~~-~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~-~~ 358 (779)
|||||++.+ .+|...+..++..++++.|++++|||++..+..++..++.++..+.+...... ...+.+.+..+.. ..
T Consensus 241 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~ 319 (479)
T 3fmp_B 241 LDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEET-LDTIKQYYVLCSSRDE 319 (479)
T ss_dssp ECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC----------------------
T ss_pred EECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccC-cCCceEEEEEeCCHHH
Confidence 999999987 57888888999999999999999999999999999999999888877665432 2334444433332 34
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q psy17912 359 KDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQ 438 (779)
Q Consensus 359 k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~G 438 (779)
+...+..++.. ....++||||+++..++.+++.|...++.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 320 ~~~~l~~~~~~---~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~G 396 (479)
T 3fmp_B 320 KFQALCNLYGA---ITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARG 396 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhh---ccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccC
Confidence 44445555443 246789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccccccceeEEEEcCCC------CCHHHHHHHhccCCCCCCeEEEEEcCh
Q psy17912 439 ERDRVLNEFRIGRASILVSQYKES------QQKRDRVLNEFRIGRASILVSHYNKSQ 489 (779)
Q Consensus 439 IDip~v~~~~~~~~~~~VI~y~~p------~s~~~yiQR~GRaGR~g~~~~~~~~~~ 489 (779)
||+|.++ +||+|++| .+..+|+||+||+||.|..|.++.+..
T Consensus 397 lDip~v~---------~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~~G~~i~~~~ 444 (479)
T 3fmp_B 397 IDVEQVS---------VVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVD 444 (479)
T ss_dssp ---------------------------------------------------------
T ss_pred CccccCC---------EEEEecCCCCCccCCCHHHHHHHhcccccCCCCceEEEEEc
Confidence 9999998 99999999 467899999999999998776666544
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.6e-46 Score=405.03 Aligned_cols=319 Identities=30% Similarity=0.475 Sum_probs=275.8
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHH
Q psy17912 135 FPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELA 214 (779)
Q Consensus 135 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La 214 (779)
|++.+.+.+.++||..|+|+|.++++.+++++++++.+|||+|||++|++|++.. ++++||++|+++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5789999999999999999999999999999999999999999999999998863 34799999999999
Q ss_pred HHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchH
Q psy17912 215 QQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEP 294 (779)
Q Consensus 215 ~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~ 294 (779)
.|+.+.+++++...++.+..++|+.....+...+.. ++|+|+||++|.+.+......+.++++||+||||++.+++|..
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~ 148 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFID 148 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHH
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHH
Confidence 999999999988888999999998877666655544 8999999999999988877788999999999999999999999
Q ss_pred HHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCC
Q psy17912 295 QIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSER 374 (779)
Q Consensus 295 ~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~ 374 (779)
.+..++...+...+++++|||+|+.+...+..++.++..+... ....++.+.+.......+ ..... +....
T Consensus 149 ~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~ 219 (337)
T 2z0m_A 149 DIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGLANVEHKFVHVKDDWR--SKVQA---LRENK 219 (337)
T ss_dssp HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGGGGEEEEEEECSSSSH--HHHHH---HHTCC
T ss_pred HHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----cccCCceEEEEEeChHHH--HHHHH---HHhCC
Confidence 9999999998899999999999999999999998887665432 122344444444433222 22223 33456
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccccccee
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASI 454 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~ 454 (779)
..++||||+++++++.+++.|. .+..+||+++..+|.++++.|++|+.+|||||+++++|+|+|.++
T Consensus 220 ~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~--------- 286 (337)
T 2z0m_A 220 DKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVE--------- 286 (337)
T ss_dssp CSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBS---------
T ss_pred CCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCC---------
Confidence 7899999999999999999986 588999999999999999999999999999999999999999998
Q ss_pred EEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEc
Q psy17912 455 LVSQYKESQQKRDRVLNEFRIGRASILVSHYNK 487 (779)
Q Consensus 455 ~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~ 487 (779)
+||+|++|.++.+|+||+||+||.|..+.++..
T Consensus 287 ~Vi~~~~~~s~~~~~Q~~GR~gR~g~~g~~~~~ 319 (337)
T 2z0m_A 287 KVINFDAPQDLRTYIHRIGRTGRMGRKGEAITF 319 (337)
T ss_dssp EEEESSCCSSHHHHHHHHTTBCGGGCCEEEEEE
T ss_pred EEEEecCCCCHHHhhHhcCccccCCCCceEEEE
Confidence 999999999999999999999999876644443
No 15
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.8e-46 Score=437.21 Aligned_cols=342 Identities=16% Similarity=0.204 Sum_probs=274.8
Q ss_pred CcCCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc
Q psy17912 130 FEECNFPPYIMKKIYE-MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA 208 (779)
Q Consensus 130 f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~ 208 (779)
+.++++++.+.+.|++ +||..|+|+|.++++.+++|+|+++++|||+|||++|++|++.. .+++|||+
T Consensus 23 ~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~~lVis 91 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGFTLVIC 91 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSEEEEEC
T ss_pred cccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCcEEEEe
Confidence 4457889999999998 79999999999999999999999999999999999999999851 34899999
Q ss_pred cCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHh------hcCCeEEEeChHHHH------HHHHcCCcCCCCe
Q psy17912 209 PTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKAL------QTGAEIVIATPGRLI------DYLEQGTINLHRT 276 (779)
Q Consensus 209 Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l------~~~~~IiV~Tpe~Ll------~~l~~~~~~l~~i 276 (779)
|+++|+.|+.+.+.++ ++.+..++|+....+..... ...++|+|+||++|. +.+. ....+..+
T Consensus 92 P~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~~~~~~i 166 (591)
T 2v1x_A 92 PLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE-KAYEARRF 166 (591)
T ss_dssp SCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH-HHHHTTCE
T ss_pred CHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH-hhhhccCC
Confidence 9999999999999987 77888888887765443222 346899999999874 2232 23357789
Q ss_pred eEEEEccchhhhcCC--chHHHHH--HHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEE
Q psy17912 277 SYLVLDEADRMLDMG--FEPQIRK--IIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVD 352 (779)
Q Consensus 277 ~~lViDEaH~l~~~~--f~~~l~~--il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~ 352 (779)
++|||||||++.+|+ |++.+.. ++....++.++++||||+++.+...+..++..+....+... ....++...+.
T Consensus 167 ~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~--~~r~nl~~~v~ 244 (591)
T 2v1x_A 167 TRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTAS--FNRPNLYYEVR 244 (591)
T ss_dssp EEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECC--CCCTTEEEEEE
T ss_pred cEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecC--CCCcccEEEEE
Confidence 999999999999988 8888766 45555678999999999999988888877764322222111 11233333332
Q ss_pred eccccchhHHHHHHHHHhcc-CCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE
Q psy17912 353 VCQEHEKDYKLQGLLSQIGS-ERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVS 431 (779)
Q Consensus 353 ~~~~~~k~~~L~~ll~~i~~-~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVA 431 (779)
.. ...+...+..++..+.. ..+.++||||++++.++.+++.|...|+.+..+||+|++.+|..+++.|++|+.+||||
T Consensus 245 ~~-~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVA 323 (591)
T 2v1x_A 245 QK-PSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSANEIQVVVA 323 (591)
T ss_dssp EC-CSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEE
T ss_pred eC-CCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEE
Confidence 22 22233444455554432 25789999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhh
Q psy17912 432 QYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 499 (779)
Q Consensus 432 T~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~ 499 (779)
|+++++|||+|+++ +||+|++|.++++|+||+|||||.|..+.++.....+....+..+
T Consensus 324 T~a~~~GID~p~V~---------~VI~~~~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 324 TVAFGMGIDKPDVR---------FVIHHSMSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRISSM 382 (591)
T ss_dssp CTTSCTTCCCSCEE---------EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHHH
T ss_pred echhhcCCCccccc---------EEEEeCCCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHHHHH
Confidence 99999999999998 999999999999999999999999988876666555554444443
No 16
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=7.4e-46 Score=427.46 Aligned_cols=338 Identities=19% Similarity=0.229 Sum_probs=271.0
Q ss_pred CCCcCCCCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEE
Q psy17912 128 QHFEECNFPPYIMKKIYE-MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLV 206 (779)
Q Consensus 128 ~~f~~~~l~~~l~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLi 206 (779)
.+|+++++++.+.+.|.+ +||..|+|+|.++++.+++++|+++++|||+|||++|++|++.. .+.+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 578999999999999998 89999999999999999999999999999999999999999842 247999
Q ss_pred EccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHH----hhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEc
Q psy17912 207 LAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKA----LQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLD 282 (779)
Q Consensus 207 l~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~----l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViD 282 (779)
|+|+++|+.|+.+.+.++ ++.+..+.++....+.... ....++|+|+||++|........+...++++||||
T Consensus 71 i~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred ECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 999999999999999886 6778888887765443322 23458999999999863322222345789999999
Q ss_pred cchhhhcCC--chHHHHHHH--hhcCCCCceEEeeccccHHHHHHHHHhc--cCcEEEecCCCCCCCccceEEEEEeccc
Q psy17912 283 EADRMLDMG--FEPQIRKII--GQIRPDRQVLMWSATWPKEVQKLAEDFL--VDYVQLNIGSLNPTANHNIVQIVDVCQE 356 (779)
Q Consensus 283 EaH~l~~~~--f~~~l~~il--~~l~~~~qilllSAT~~~~v~~l~~~~l--~~~~~i~i~~~~~~~~~~i~~~~~~~~~ 356 (779)
|||++.+|+ |.+.+..+. ....++.+++++|||+++.+...+...+ .++... +.... ..++...+ ...
T Consensus 147 EaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~---r~~l~~~v--~~~ 220 (523)
T 1oyw_A 147 EAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFD---RPNIRYML--MEK 220 (523)
T ss_dssp SGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCCC---CTTEEEEE--EEC
T ss_pred CccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCCC---CCceEEEE--EeC
Confidence 999999987 777776653 2234679999999999988766555444 233333 32222 22333222 233
Q ss_pred cchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q psy17912 357 HEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKS 436 (779)
Q Consensus 357 ~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~ 436 (779)
..+...+..++.. ..+.++||||+|++.++.+++.|...++.+..+||+|++++|..+++.|++|+.+|||||++++
T Consensus 221 ~~~~~~l~~~l~~---~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~ 297 (523)
T 1oyw_A 221 FKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFG 297 (523)
T ss_dssp SSHHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSC
T ss_pred CCHHHHHHHHHHh---cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhh
Confidence 3445555555543 3567999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHh
Q psy17912 437 QQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 498 (779)
Q Consensus 437 ~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e 498 (779)
+|||+|+++ +||+|++|.++++|+||+|||||.|..+.++....++....+..
T Consensus 298 ~GiD~p~v~---------~VI~~~~p~s~~~y~Qr~GRaGR~g~~~~~~l~~~~~d~~~~~~ 350 (523)
T 1oyw_A 298 MGINKPNVR---------FVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAWLRR 350 (523)
T ss_dssp TTTCCTTCC---------EEEESSCCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHHHH
T ss_pred CCCCccCcc---------EEEEECCCCCHHHHHHHhccccCCCCCceEEEEeCHHHHHHHHH
Confidence 999999999 99999999999999999999999998887666555554444443
No 17
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1e-45 Score=425.66 Aligned_cols=342 Identities=25% Similarity=0.382 Sum_probs=241.1
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCC
Q psy17912 123 VPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSG--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGE 200 (779)
Q Consensus 123 ~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~ 200 (779)
.|.++..|...++++.+.+.+.+.|+..|+++|.++++.++++ +++++++|||||||++|+++++..+... ..
T Consensus 114 ~p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-----~~ 188 (508)
T 3fho_A 114 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-----VP 188 (508)
T ss_dssp -------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----CC
T ss_pred cccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----CC
Confidence 3455666777789999999999999999999999999999998 9999999999999999999999887542 23
Q ss_pred CCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEE
Q psy17912 201 GPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLV 280 (779)
Q Consensus 201 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lV 280 (779)
++++||++|+++|+.|+.+.++++....++.+....++..... ....++|+|+||++|.+.+......+.++++||
T Consensus 189 ~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lII 264 (508)
T 3fho_A 189 KPQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFV 264 (508)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEE
Confidence 5689999999999999999999998877776666555543321 233589999999999999988888899999999
Q ss_pred Eccchhhhc-CCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEec-cccc
Q psy17912 281 LDEADRMLD-MGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVC-QEHE 358 (779)
Q Consensus 281 iDEaH~l~~-~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~-~~~~ 358 (779)
|||||++.+ .++...+..++..++++.|++++|||+++.+..+...+..++..+.+....... ..+.+.+... ....
T Consensus 265 iDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~ 343 (508)
T 3fho_A 265 LDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSV-EGIKQLYMDCQSEEH 343 (508)
T ss_dssp ECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC-----CCCCEEEEC--CHH
T ss_pred EechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCc-ccceEEEEECCchHH
Confidence 999999887 678899999999999999999999999999999999999888877665544322 2233333322 3334
Q ss_pred hhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccc
Q psy17912 359 KDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQ 438 (779)
Q Consensus 359 k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~G 438 (779)
+...+..++.. ...+++||||+++..++.+++.|.+.++.+..+||++++.+|..+++.|++|+.+|||||+++++|
T Consensus 344 k~~~l~~ll~~---~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~~l~~G 420 (508)
T 3fho_A 344 KYNVLVELYGL---LTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTNVIARG 420 (508)
T ss_dssp HHHHHHHHHC------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----
T ss_pred HHHHHHHHHHh---cCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCChhhcC
Confidence 44444444443 356899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcccccccccceeEEEEcCCC------CCHHHHHHHhccCCCCCCeEEEEE
Q psy17912 439 ERDRVLNEFRIGRASILVSQYKES------QQKRDRVLNEFRIGRASILVSHYN 486 (779)
Q Consensus 439 IDip~v~~~~~~~~~~~VI~y~~p------~s~~~yiQR~GRaGR~g~~~~~~~ 486 (779)
+|+|.++ +||+|+.| .++.+|+||+||+||.|..+.++.
T Consensus 421 iDip~v~---------~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~ 465 (508)
T 3fho_A 421 IDVSQVN---------LVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSIN 465 (508)
T ss_dssp CCCTTCC---------EEEC----CC-----CTHHHHHTTSCCC-----CEEEE
T ss_pred CCccCCC---------EEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEE
Confidence 9999998 99999999 889999999999999986665544
No 18
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.2e-43 Score=398.02 Aligned_cols=312 Identities=18% Similarity=0.222 Sum_probs=252.8
Q ss_pred HHHHHHHH-cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHH
Q psy17912 138 YIMKKIYE-MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQ 216 (779)
Q Consensus 138 ~l~~~l~~-~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q 216 (779)
.+.+.+++ ++| +|+|+|.++++.+++++|+++++|||+|||++|++|++..+. .++++||++||++|+.|
T Consensus 9 ~~~~~l~~~~~~-~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~~--------~~~~~lil~Pt~~L~~q 79 (414)
T 3oiy_A 9 DFRSFFKKKFGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQ 79 (414)
T ss_dssp HHHHHHHHHHSS-CCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHH
T ss_pred HHHHHHHHhcCC-CCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHhc--------CCCEEEEEECCHHHHHH
Confidence 34455554 455 899999999999999999999999999999999999887662 36689999999999999
Q ss_pred HHHHHHHhcccCCceEEEEeCCCCC---hhhHHHhhcC-CeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhc---
Q psy17912 217 IETVANDFGSATATRVACVFGGAPK---GPQVKALQTG-AEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLD--- 289 (779)
Q Consensus 217 ~~~~~~~~~~~~~l~v~~~~gg~~~---~~~~~~l~~~-~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~--- 289 (779)
+.+.+++++. .++++..++|+.+. ..+...+..+ ++|+|+||++|.+.+.. +.+.++++|||||||++.+
T Consensus 80 ~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~ 156 (414)
T 3oiy_A 80 TLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASR 156 (414)
T ss_dssp HHHHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHH
T ss_pred HHHHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccc
Confidence 9999999988 88999999999887 4455556555 89999999999888764 5677999999999987654
Q ss_pred --------CCchHH-HHHHHhhcC-----------CCCceEEeecc-ccHHHH-HHHHHhccCcEEEecCCCCCCCccce
Q psy17912 290 --------MGFEPQ-IRKIIGQIR-----------PDRQVLMWSAT-WPKEVQ-KLAEDFLVDYVQLNIGSLNPTANHNI 347 (779)
Q Consensus 290 --------~~f~~~-l~~il~~l~-----------~~~qilllSAT-~~~~v~-~l~~~~l~~~~~i~i~~~~~~~~~~i 347 (779)
.+|... +..++..++ ++.|++++||| .|..+. .+...++. +.+.... ....++
T Consensus 157 ~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~i 231 (414)
T 3oiy_A 157 NIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNI 231 (414)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCCC-CCCCSE
T ss_pred hhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCccc-cccccc
Confidence 678877 788888776 88999999999 565544 23333322 2222222 233445
Q ss_pred EEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEE-EEcCCCCHHHHHHHHHHHhcCCC
Q psy17912 348 VQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAV-AIHGNKSQQERDRVLNEFRIGRA 426 (779)
Q Consensus 348 ~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~-~ihg~~~~~eR~~il~~F~~G~~ 426 (779)
.+.+... ++...+..++... +.++||||+++..|+.+++.|...++.+. .+||. +|+ ++.|++|+.
T Consensus 232 ~~~~~~~---~~~~~l~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~~ 298 (414)
T 3oiy_A 232 THVRISS---RSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGKI 298 (414)
T ss_dssp EEEEESS---CCHHHHHHHHHHH----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTSC
T ss_pred hheeecc---CHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCCC
Confidence 5554433 4666777777763 48899999999999999999999999998 99995 444 999999999
Q ss_pred cEEEE----ecccccccccCc-ccccccccceeEEEEcCCC--CCHHHHHHHhccCCCCC----CeEEEEEcC
Q psy17912 427 SILVS----QYNKSQQERDRV-LNEFRIGRASILVSQYKES--QQKRDRVLNEFRIGRAS----ILVSHYNKS 488 (779)
Q Consensus 427 ~ILVA----T~v~~~GIDip~-v~~~~~~~~~~~VI~y~~p--~s~~~yiQR~GRaGR~g----~~~~~~~~~ 488 (779)
+|||| |+++++|+|+|+ ++ +||+|+.| .++.+|+||+||+||.| ..|.++...
T Consensus 299 ~vLvat~s~T~~~~~GiDip~~v~---------~VI~~~~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 299 NILIGVQAYYGKLTRGVDLPERIK---------YVIFWGTPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp SEEEEECCTTCCCCCCCCCTTTCC---------EEEEESCCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred eEEEEecCcCchhhccCccccccC---------EEEEECCCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 99999 999999999999 89 99999999 99999999999999987 356555544
No 19
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.2e-42 Score=416.63 Aligned_cols=377 Identities=18% Similarity=0.179 Sum_probs=283.3
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEE
Q psy17912 127 IQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPI-ALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVL 205 (779)
Q Consensus 127 i~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vL 205 (779)
..+|+++++++.+.+.+.+.||..|+|+|.++++. +.+++++++++|||||||+++.++++..+... +.+++
T Consensus 7 ~~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~il 79 (715)
T 2va8_A 7 WMPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKN-------GGKAI 79 (715)
T ss_dssp CCBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHS-------CSEEE
T ss_pred cCcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHC-------CCeEE
Confidence 35799999999999999999999999999999999 78999999999999999999999999887642 46899
Q ss_pred EEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccch
Q psy17912 206 VLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEAD 285 (779)
Q Consensus 206 il~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH 285 (779)
|++|+++||.|+++.++.+ ...++++..++|+....+.. + ..++|+|+||++|...+......++++++|||||||
T Consensus 80 ~i~P~r~La~q~~~~~~~~-~~~g~~v~~~~G~~~~~~~~--~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H 155 (715)
T 2va8_A 80 YVTPLRALTNEKYLTFKDW-ELIGFKVAMTSGDYDTDDAW--L-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELH 155 (715)
T ss_dssp EECSCHHHHHHHHHHHGGG-GGGTCCEEECCSCSSSCCGG--G-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGG
T ss_pred EEeCcHHHHHHHHHHHHHh-hcCCCEEEEEeCCCCCchhh--c-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechh
Confidence 9999999999999999655 34588999999987765431 2 358999999999999988876668999999999999
Q ss_pred hhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceE--------EEEEecccc
Q psy17912 286 RMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIV--------QIVDVCQEH 357 (779)
Q Consensus 286 ~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~--------~~~~~~~~~ 357 (779)
.+.+..+...+..++..++ +.|+++||||+++. ..+.. ++..+..... .........+. ..+.+....
T Consensus 156 ~l~~~~~~~~l~~i~~~~~-~~~ii~lSATl~n~-~~~~~-~l~~~~~~~~-~r~~~l~~~~~~~~~~~~~~~~~~~~~~ 231 (715)
T 2va8_A 156 YLNDPERGPVVESVTIRAK-RRNLLALSATISNY-KQIAK-WLGAEPVATN-WRPVPLIEGVIYPERKKKEYNVIFKDNT 231 (715)
T ss_dssp GGGCTTTHHHHHHHHHHHH-TSEEEEEESCCTTH-HHHHH-HHTCEEEECC-CCSSCEEEEEEEECSSTTEEEEEETTSC
T ss_pred hcCCcccchHHHHHHHhcc-cCcEEEEcCCCCCH-HHHHH-HhCCCccCCC-CCCCCceEEEEecCCcccceeeecCcch
Confidence 9988888888888888776 89999999999753 34443 4443321111 11100100000 011111100
Q ss_pred ----chhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCC----------------------------------
Q psy17912 358 ----EKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKG---------------------------------- 399 (779)
Q Consensus 358 ----~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g---------------------------------- 399 (779)
........++..... .++++||||+++++++.+++.|.+..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~ 310 (715)
T 2va8_A 232 TKKVHGDDAIIAYTLDSLS-KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSL 310 (715)
T ss_dssp EEEEESSSHHHHHHHHHHT-TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHH
T ss_pred hhhcccchHHHHHHHHHHh-cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHH
Confidence 001223333333222 46899999999999999999998642
Q ss_pred --CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEE----cC-------CCCCHH
Q psy17912 400 --WAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQ----YK-------ESQQKR 466 (779)
Q Consensus 400 --~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~----y~-------~p~s~~ 466 (779)
..+..+||+|++++|..+++.|++|+++|||||+++++|||+|.++ +||+ |+ .|.+..
T Consensus 311 ~~~~v~~~h~~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~---------~VI~~~~~~d~~~~~~~~~~s~~ 381 (715)
T 2va8_A 311 ISKGVAYHHAGLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPART---------VIIGDIYRFNKKIAGYYDEIPIM 381 (715)
T ss_dssp HTTTEEEECTTSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSE---------EEECCC--------------CHH
T ss_pred HhcCEEEECCCCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceE---------EEEeCCeeccccCCCCCCcCCHH
Confidence 2489999999999999999999999999999999999999999988 8998 88 899999
Q ss_pred HHHHHhccCCCCC--CeEEEEEcChH-H-HHHHHHhhhccccceeeccccccHHHHHHhhhhhccc
Q psy17912 467 DRVLNEFRIGRAS--ILVSHYNKSQQ-E-RDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIG 528 (779)
Q Consensus 467 ~yiQR~GRaGR~g--~~~~~~~~~~~-e-~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 528 (779)
+|+||+|||||.| ..|.+|..... + ....++++......++.++........+.++.....|
T Consensus 382 ~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g 447 (715)
T 2va8_A 382 EYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAE 447 (715)
T ss_dssp HHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhcc
Confidence 9999999999998 35655555433 2 2345666666667777777665445555555544333
No 20
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=7e-43 Score=418.79 Aligned_cols=365 Identities=20% Similarity=0.204 Sum_probs=282.3
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHH-HhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE
Q psy17912 129 HFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPI-ALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL 207 (779)
Q Consensus 129 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~-il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil 207 (779)
+|+++++++.+.+.+.+.||..|+|+|.++++. +.+++++++++|||||||++|.+|++..+... +++++|+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 588899999999999999999999999999998 88999999999999999999999999887642 4689999
Q ss_pred ccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhh
Q psy17912 208 APTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRM 287 (779)
Q Consensus 208 ~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l 287 (779)
+|+++|+.|+++.++++.. .++++..++|+....... ...++|+|+||++|...+......++++++|||||||++
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~~---~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCGG---GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCccccc---cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999976543 588999999977654331 235899999999999998877666899999999999999
Q ss_pred hcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEE------Eecc-----c
Q psy17912 288 LDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIV------DVCQ-----E 356 (779)
Q Consensus 288 ~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~------~~~~-----~ 356 (779)
.++++...+..++..++++.|+++||||+++. ..+. .++..+.. .... . .. .+...+ .+.. .
T Consensus 151 ~~~~r~~~~~~ll~~l~~~~~ii~lSATl~n~-~~~~-~~l~~~~~-~~~~-r-p~--~l~~~~~~~~~~~~~~~~~~~~ 223 (720)
T 2zj8_A 151 GSRDRGATLEVILAHMLGKAQIIGLSATIGNP-EELA-EWLNAELI-VSDW-R-PV--KLRRGVFYQGFVTWEDGSIDRF 223 (720)
T ss_dssp GCTTTHHHHHHHHHHHBTTBEEEEEECCCSCH-HHHH-HHTTEEEE-ECCC-C-SS--EEEEEEEETTEEEETTSCEEEC
T ss_pred CCCcccHHHHHHHHHhhcCCeEEEEcCCcCCH-HHHH-HHhCCccc-CCCC-C-CC--cceEEEEeCCeeeccccchhhh
Confidence 99889999999998887789999999999763 3443 44432221 1111 0 01 111111 1111 1
Q ss_pred cchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC------------------C---------------CeEE
Q psy17912 357 HEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK------------------G---------------WAAV 403 (779)
Q Consensus 357 ~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~------------------g---------------~~v~ 403 (779)
......+.+++. .++++||||+++++++.++..|.+. + ..+.
T Consensus 224 ~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~ 298 (720)
T 2zj8_A 224 SSWEELVYDAIR-----KKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVA 298 (720)
T ss_dssp SSTTHHHHHHHH-----TTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEE
T ss_pred hHHHHHHHHHHh-----CCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCee
Confidence 122223333322 4689999999999999999999753 1 2489
Q ss_pred EEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEE----cC----CCCCHHHHHHHhccC
Q psy17912 404 AIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQ----YK----ESQQKRDRVLNEFRI 475 (779)
Q Consensus 404 ~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~----y~----~p~s~~~yiQR~GRa 475 (779)
.+||+|++++|..+++.|++|+++|||||+++++|||+|.++ +||+ |+ .|.+..+|+||+|||
T Consensus 299 ~~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gvdip~~~---------~VI~~~~~yd~~g~~~~s~~~~~Qr~GRa 369 (720)
T 2zj8_A 299 FHHAGLGRDERVLVEENFRKGIIKAVVATPTLSAGINTPAFR---------VIIRDIWRYSDFGMERIPIIEVHQMLGRA 369 (720)
T ss_dssp EECTTSCHHHHHHHHHHHHTTSSCEEEECSTTGGGCCCCBSE---------EEECCSEECCSSSCEECCHHHHHHHHTTB
T ss_pred eecCCCCHHHHHHHHHHHHCCCCeEEEECcHhhccCCCCceE---------EEEcCCeeecCCCCccCCHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999988 8888 76 589999999999999
Q ss_pred CCCC--CeEEEEEcChH-HHHHHHHhhhccccceeeccccccHHHHHHhhhhh
Q psy17912 476 GRAS--ILVSHYNKSQQ-ERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 525 (779)
Q Consensus 476 GR~g--~~~~~~~~~~~-e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~ 525 (779)
||.| ..|.++..... +....+.++..+....+.++.......++.++...
T Consensus 370 GR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i 422 (720)
T 2zj8_A 370 GRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALI 422 (720)
T ss_dssp CCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHH
T ss_pred CCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHH
Confidence 9998 46655554333 33344555655566666666554445555555544
No 21
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-43 Score=435.99 Aligned_cols=362 Identities=14% Similarity=0.069 Sum_probs=283.8
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc
Q psy17912 129 HFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA 208 (779)
Q Consensus 129 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~ 208 (779)
.|..+++++.+...+...++..|+|+|.++++.+.+++++|++||||||||++|++|++..+.. ++++||++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~--------g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT--------TCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc--------CCeEEEEc
Confidence 5666667766666666667778999999999999999999999999999999999999988754 56899999
Q ss_pred cCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhh
Q psy17912 209 PTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRML 288 (779)
Q Consensus 209 Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~ 288 (779)
||++|+.|+++.+.++.. .+..++|+.... .+++|+|+||++|.+++..+...+.++++|||||||++.
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~~-------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBCC-------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTT
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCccccC-------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcc
Confidence 999999999999998765 577788877643 348999999999999998887778899999999999999
Q ss_pred cCCchHHHHHHHhhcCCCCceEEeeccccHH--HHHHHHHhccCcEEEecCCCCCCCccceEEEEEe---------cccc
Q psy17912 289 DMGFEPQIRKIIGQIRPDRQVLMWSATWPKE--VQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDV---------CQEH 357 (779)
Q Consensus 289 ~~~f~~~l~~il~~l~~~~qilllSAT~~~~--v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~---------~~~~ 357 (779)
+++|...+..++..+++..|+++||||+|+. +..++......+..+......+.. +...+.. ....
T Consensus 304 d~~rg~~~e~ii~~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~p---l~~~~~~~~~~~~~~~vd~~ 380 (1108)
T 3l9o_A 304 DKERGVVWEETIILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTP---LQHYLFPAHGDGIYLVVDEK 380 (1108)
T ss_dssp SHHHHHHHHHHHHHSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSC---EEEEEEETTSSCCEEEEETT
T ss_pred ccchHHHHHHHHHhcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCccc---ceEEEeecCCcceeeeeccc
Confidence 9999999999999999999999999999764 445666666666655544333221 1111110 0000
Q ss_pred c-------------------------------------------hhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHH
Q psy17912 358 E-------------------------------------------KDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRS 394 (779)
Q Consensus 358 ~-------------------------------------------k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~ 394 (779)
. ....+..++..+......++||||++++.|+.++..
T Consensus 381 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~ 460 (1108)
T 3l9o_A 381 STFREENFQKAMASISNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALK 460 (1108)
T ss_dssp TEECHHHHHHHHTTC-----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHH
T ss_pred cchhhhhHHHHHHHHHhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHH
Confidence 0 034455566666556678999999999999999999
Q ss_pred HHhCCCe---------------------------------------EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc
Q psy17912 395 VRNKGWA---------------------------------------AVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK 435 (779)
Q Consensus 395 L~~~g~~---------------------------------------v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~ 435 (779)
|...++. +..+||+|++.+|..+++.|++|.++|||||+++
T Consensus 461 L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vl 540 (1108)
T 3l9o_A 461 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETF 540 (1108)
T ss_dssp TCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCC
T ss_pred HHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHH
Confidence 8653222 7999999999999999999999999999999999
Q ss_pred ccccccCcccccccccceeEEEEcCC--------CCCHHHHHHHhccCCCCC--CeEEEEEcCh-HHHHHHHHhhhcccc
Q psy17912 436 SQQERDRVLNEFRIGRASILVSQYKE--------SQQKRDRVLNEFRIGRAS--ILVSHYNKSQ-QERDRVLNEFRIGRA 504 (779)
Q Consensus 436 ~~GIDip~v~~~~~~~~~~~VI~y~~--------p~s~~~yiQR~GRaGR~g--~~~~~~~~~~-~e~~~~l~e~~~~~~ 504 (779)
++|||+|.++ +||+++. |.++.+|+||+|||||.| ..+.+|.... ......+..+..++.
T Consensus 541 a~GIDiP~v~---------~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~~~~~~~~~l~~~~~ 611 (1108)
T 3l9o_A 541 SIGLNMPAKT---------VVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQA 611 (1108)
T ss_dssp CSCCCC--CE---------EEESCSEEESSSCEEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCCCCHHHHHHHHHCCC
T ss_pred hcCCCCCCce---------EEEecCcccCccccccCCHHHHHHhhcccCCCCCCCceEEEEEecCCcCHHHHHHHhcCCC
Confidence 9999999988 8887665 448889999999999999 5666665433 334556777777777
Q ss_pred ceeeccccccHHHHHHh
Q psy17912 505 SILVSHYNKSQQERDRV 521 (779)
Q Consensus 505 ~il~~~~~~~~~~~~~~ 521 (779)
..+.+.+....+..-.+
T Consensus 612 ~~L~S~f~~~y~~ilnl 628 (1108)
T 3l9o_A 612 DRLDSAFHLGYNMILNL 628 (1108)
T ss_dssp CCCCCCCCCCHHHHHHH
T ss_pred cccccccCCcHHHHHHH
Confidence 78888776654433333
No 22
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=4.2e-43 Score=419.51 Aligned_cols=369 Identities=17% Similarity=0.171 Sum_probs=278.6
Q ss_pred CCcCCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEE
Q psy17912 129 HFEECN--FPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLV 206 (779)
Q Consensus 129 ~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLi 206 (779)
+|++++ +++.+.+.+.++||.+|+|+|.++++.+.+++++++++|||||||++|.+|++..+.. +++++|
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 577777 9999999999999999999999999999999999999999999999999999988764 457999
Q ss_pred EccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchh
Q psy17912 207 LAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADR 286 (779)
Q Consensus 207 l~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~ 286 (779)
++|+++||.|+++.++.+. ..++++..++|+....+. ....++|+|+||++|..++......++++++|||||||+
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999996553 458899999998766543 123689999999999999887666688999999999999
Q ss_pred hhcCCchHHHHHHHhhc---CCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEE------Eecccc
Q psy17912 287 MLDMGFEPQIRKIIGQI---RPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIV------DVCQEH 357 (779)
Q Consensus 287 l~~~~f~~~l~~il~~l---~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~------~~~~~~ 357 (779)
+.++++...+..++..+ .++.|+++||||+++ ...+. .++..+..... ... . .+...+ .+....
T Consensus 150 l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~-~~l~~~~~~~~-~r~--~--~l~~~~~~~~~~~~~~~~ 222 (702)
T 2p6r_A 150 LDSEKRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIA-EWLDADYYVSD-WRP--V--PLVEGVLCEGTLELFDGA 222 (702)
T ss_dssp GGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHH-HHTTCEEEECC-CCS--S--CEEEEEECSSEEEEEETT
T ss_pred cCCCCcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHH-HHhCCCcccCC-CCC--c--cceEEEeeCCeeeccCcc
Confidence 99988888887776655 578999999999986 34444 45443332111 111 0 111111 111111
Q ss_pred c---hhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC------------------------------CCeEEE
Q psy17912 358 E---KDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK------------------------------GWAAVA 404 (779)
Q Consensus 358 ~---k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~------------------------------g~~v~~ 404 (779)
. +...+..++..... .++++||||+++++++.+++.|... +..+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~-~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~ 301 (702)
T 2p6r_A 223 FSTSRRVKFEELVEECVA-ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAF 301 (702)
T ss_dssp EEEEEECCHHHHHHHHHH-TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCE
T ss_pred hhhhhhhhHHHHHHHHHh-cCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEE
Confidence 0 00002222222222 4789999999999999999998752 135788
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEE----cC---CCCCHHHHHHHhccCCC
Q psy17912 405 IHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQ----YK---ESQQKRDRVLNEFRIGR 477 (779)
Q Consensus 405 ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~----y~---~p~s~~~yiQR~GRaGR 477 (779)
+||+|++++|..+++.|++|+++|||||+++++|||+|.++ +||+ |+ .|.+..+|+||+|||||
T Consensus 302 ~h~~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~---------~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR 372 (702)
T 2p6r_A 302 HHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARR---------VIVRSLYRFDGYSKRIKVSEYKQMAGRAGR 372 (702)
T ss_dssp ECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSE---------EEECCSEEESSSEEECCHHHHHHHHTTBSC
T ss_pred ecCCCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceE---------EEEcCceeeCCCCCcCCHHHHHHHhhhcCC
Confidence 99999999999999999999999999999999999999988 8888 66 78999999999999999
Q ss_pred CC--CeEEEEEcChHHH-HHHHHhhhccccceeeccccccHHHHHHhhhhhc
Q psy17912 478 AS--ILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR 526 (779)
Q Consensus 478 ~g--~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~ 526 (779)
.| ..|.+|....... ...+.++......++.++........+.++....
T Consensus 373 ~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~ 424 (702)
T 2p6r_A 373 PGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIIC 424 (702)
T ss_dssp TTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHH
T ss_pred CCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHH
Confidence 98 4666665544333 3445556666677777777654455555655443
No 23
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=3.5e-42 Score=411.49 Aligned_cols=327 Identities=19% Similarity=0.188 Sum_probs=213.7
Q ss_pred HHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHH
Q psy17912 141 KKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETV 220 (779)
Q Consensus 141 ~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 220 (779)
+.+..+||.+|+|+|.++++.+++++|+|+++|||+|||++|++|++.++...+. ..++++|||+||++|+.|+.+.
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHHH
Confidence 4566789999999999999999999999999999999999999999988876431 2236899999999999999999
Q ss_pred HHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCc-CCCCeeEEEEccchhhhcCC-chHHHHH
Q psy17912 221 ANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTI-NLHRTSYLVLDEADRMLDMG-FEPQIRK 298 (779)
Q Consensus 221 ~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~-~l~~i~~lViDEaH~l~~~~-f~~~l~~ 298 (779)
+++++...++++..++|+.....+...+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++.+.. +...+..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHHH
Confidence 999998889999999999887766666667799999999999999988766 78999999999999988654 2222222
Q ss_pred HHhh-----cCCCCceEEeecccc-------HHHHHHHHHhc----------------------cCcEEEecCCCCCC--
Q psy17912 299 IIGQ-----IRPDRQVLMWSATWP-------KEVQKLAEDFL----------------------VDYVQLNIGSLNPT-- 342 (779)
Q Consensus 299 il~~-----l~~~~qilllSAT~~-------~~v~~l~~~~l----------------------~~~~~i~i~~~~~~-- 342 (779)
.+.. ..+..++++||||+. .+....+...+ ..|...........
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 240 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISD 240 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCC
T ss_pred HHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCC
Confidence 2222 246789999999986 22111111111 11110000000000
Q ss_pred -----------------------------------Cc-------------------------------------------
Q psy17912 343 -----------------------------------AN------------------------------------------- 344 (779)
Q Consensus 343 -----------------------------------~~------------------------------------------- 344 (779)
..
T Consensus 241 ~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~ 320 (696)
T 2ykg_A 241 KFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYN 320 (696)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHh
Confidence 00
Q ss_pred ------------------------------cceEEEEEe----------------ccccchhHHHHHHHHHhc-cCCCCc
Q psy17912 345 ------------------------------HNIVQIVDV----------------CQEHEKDYKLQGLLSQIG-SERTSK 377 (779)
Q Consensus 345 ------------------------------~~i~~~~~~----------------~~~~~k~~~L~~ll~~i~-~~~~~k 377 (779)
..+.+.+.. .....|...|..++.... ...+.+
T Consensus 321 ~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~ 400 (696)
T 2ykg_A 321 DALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETI 400 (696)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCC
T ss_pred HHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCc
Confidence 000000000 012345555666665542 235689
Q ss_pred EEEEecchhHHHHHHHHHHhCC----CeEEEE--------cCCCCHHHHHHHHHHHhc-CCCcEEEEecccccccccCcc
Q psy17912 378 TIIFVETKRKADDITRSVRNKG----WAAVAI--------HGNKSQQERDRVLNEFRI-GRASILVSQYNKSQQERDRVL 444 (779)
Q Consensus 378 vLVF~~s~~~ae~L~~~L~~~g----~~v~~i--------hg~~~~~eR~~il~~F~~-G~~~ILVAT~v~~~GIDip~v 444 (779)
+||||+++..++.|++.|...+ +.+..+ ||+|++++|.++++.|++ |+.+|||||+++++|||+|.+
T Consensus 401 ~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~GiDip~v 480 (696)
T 2ykg_A 401 TILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADEGIDIAQC 480 (696)
T ss_dssp EEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEESSCCC---CCC
T ss_pred EEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhcCCcCccC
Confidence 9999999999999999999987 888888 559999999999999998 999999999999999999999
Q ss_pred cccccccceeEEEEcCCCCCHHHHHHHhccCCCCCC
Q psy17912 445 NEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASI 480 (779)
Q Consensus 445 ~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~ 480 (779)
+ +||+||+|.++.+|+||+|| ||+..
T Consensus 481 ~---------~VI~~d~p~s~~~~~Qr~GR-GR~~~ 506 (696)
T 2ykg_A 481 N---------LVILYEYVGNVIKMIQTRGR-GRARG 506 (696)
T ss_dssp S---------EEEEESCC--CCCC----------CC
T ss_pred C---------EEEEeCCCCCHHHHHHhhcc-CcCCC
Confidence 9 99999999999999999999 99843
No 24
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-40 Score=407.80 Aligned_cols=336 Identities=15% Similarity=0.125 Sum_probs=263.7
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 146 MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
++|. |+|+|.++++.+.+++++++++|||+|||++|.++++..+.. ++++||++|+++|+.|+++.+.++.
T Consensus 83 ~~f~-L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~--------g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN--------KQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp CSSC-CCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT--------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCC-CCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc--------CCeEEEECChHHHHHHHHHHHHHHh
Confidence 5665 999999999999999999999999999999999999887753 5689999999999999999998875
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCC
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRP 305 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~ 305 (779)
. .+..++|+.... ..++|+|+||++|.+++......+.++++|||||||++.++++...+..++..+++
T Consensus 154 ~----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~ 222 (1010)
T 2xgj_A 154 G----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPD 222 (1010)
T ss_dssp S----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCT
T ss_pred C----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCC
Confidence 4 577788877543 24799999999999999888778999999999999999999999999999999999
Q ss_pred CCceEEeeccccHHHH--HHHHHhccCcEEEecCCCCCCCccceEEEEEec---------cccc----------------
Q psy17912 306 DRQVLMWSATWPKEVQ--KLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVC---------QEHE---------------- 358 (779)
Q Consensus 306 ~~qilllSAT~~~~v~--~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~---------~~~~---------------- 358 (779)
+.|+++||||+|+..+ .++......+..+......+. .+.+.+... ....
T Consensus 223 ~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~---pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 223 KVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPT---PLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp TCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSS---CEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred CCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcc---cceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 9999999999987532 333333444555544332221 122222110 0000
Q ss_pred -------------------h--------hHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCe----------
Q psy17912 359 -------------------K--------DYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWA---------- 401 (779)
Q Consensus 359 -------------------k--------~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~---------- 401 (779)
+ ...+..++..+......++||||+++..|+.+++.|...++.
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 379 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 379 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHH
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 0 223445555554445679999999999999999999765432
Q ss_pred -----------------------------EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccc
Q psy17912 402 -----------------------------AVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRA 452 (779)
Q Consensus 402 -----------------------------v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~ 452 (779)
+..+||+|++.+|+.+++.|++|.++|||||+++++|||+|.++
T Consensus 380 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~------- 452 (1010)
T 2xgj_A 380 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKT------- 452 (1010)
T ss_dssp HHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSE-------
T ss_pred HHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCce-------
Confidence 88999999999999999999999999999999999999999988
Q ss_pred eeEEEE----cCC----CCCHHHHHHHhccCCCCCC--eEEEEEcChHH-HHHHHHhhhccccceeeccccc
Q psy17912 453 SILVSQ----YKE----SQQKRDRVLNEFRIGRASI--LVSHYNKSQQE-RDRVLNEFRIGRASILVSHYNK 513 (779)
Q Consensus 453 ~~~VI~----y~~----p~s~~~yiQR~GRaGR~g~--~~~~~~~~~~e-~~~~l~e~~~~~~~il~~~~~~ 513 (779)
+||+ |+. |.++.+|+||+|||||.|. .|.++....+. ....+.++..+....+.+.+..
T Consensus 453 --vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~ 522 (1010)
T 2xgj_A 453 --VVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHL 522 (1010)
T ss_dssp --EEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCC
T ss_pred --EEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCC
Confidence 8999 998 8999999999999999985 46555543322 2344555555666666666654
No 25
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=5.5e-41 Score=389.78 Aligned_cols=320 Identities=18% Similarity=0.194 Sum_probs=194.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc
Q psy17912 147 GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 147 g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 226 (779)
+..+|+|+|.++++.+++++++++++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+.+.+++++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc---cCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4468999999999999999999999999999999999999998876431 2366899999999999999999999988
Q ss_pred cCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCc-CCCCeeEEEEccchhhhcCCchHHH-HHHHhh--
Q psy17912 227 ATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTI-NLHRTSYLVLDEADRMLDMGFEPQI-RKIIGQ-- 302 (779)
Q Consensus 227 ~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~-~l~~i~~lViDEaH~l~~~~f~~~l-~~il~~-- 302 (779)
..++++..++|+.....+...+..+++|+|+||++|.+.+..+.. .+..+++|||||||++.++++...+ ...+..
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~ 160 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 160 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcchHHHHHHHHHHhhh
Confidence 889999999999987777767767789999999999999988776 7899999999999999887643332 222221
Q ss_pred --cCCCCceEEeeccccH-----------HHHHHHHHhccCcEEEecCCCC---CCCccceEEEEEec------------
Q psy17912 303 --IRPDRQVLMWSATWPK-----------EVQKLAEDFLVDYVQLNIGSLN---PTANHNIVQIVDVC------------ 354 (779)
Q Consensus 303 --l~~~~qilllSAT~~~-----------~v~~l~~~~l~~~~~i~i~~~~---~~~~~~i~~~~~~~------------ 354 (779)
..+..++++||||++. .+..+...+....+........ ............+.
T Consensus 161 ~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (556)
T 4a2p_A 161 NSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAIIS 240 (556)
T ss_dssp CC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHHH
T ss_pred cccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHHH
Confidence 1456899999999842 1222222211111111000000 00000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy17912 355 -------------------------------------------------------------------------------- 354 (779)
Q Consensus 355 -------------------------------------------------------------------------------- 354 (779)
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 320 (556)
T 4a2p_A 241 NLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISED 320 (556)
T ss_dssp HHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence
Q ss_pred ------------------------------------------------cccchhHHHHHHHHHhc-cCCCCcEEEEecch
Q psy17912 355 ------------------------------------------------QEHEKDYKLQGLLSQIG-SERTSKTIIFVETK 385 (779)
Q Consensus 355 ------------------------------------------------~~~~k~~~L~~ll~~i~-~~~~~kvLVF~~s~ 385 (779)
....|...|..++.... .....++||||+++
T Consensus 321 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~ 400 (556)
T 4a2p_A 321 ARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKTR 400 (556)
T ss_dssp SCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESSH
T ss_pred hhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEccH
Confidence 01234444555554332 14578999999999
Q ss_pred hHHHHHHHHHHhC------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEecccccccccCcccccccccc
Q psy17912 386 RKADDITRSVRNK------------GWAAVAIHGNKSQQERDRVLNEFRI-GRASILVSQYNKSQQERDRVLNEFRIGRA 452 (779)
Q Consensus 386 ~~ae~L~~~L~~~------------g~~v~~ihg~~~~~eR~~il~~F~~-G~~~ILVAT~v~~~GIDip~v~~~~~~~~ 452 (779)
..++.|++.|... |.....+||+|++.+|.++++.|++ |+++|||||+++++|||+|.++
T Consensus 401 ~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~------- 473 (556)
T 4a2p_A 401 ALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCN------- 473 (556)
T ss_dssp HHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-----------C-------
T ss_pred HHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCchhCC-------
Confidence 9999999999875 5556677889999999999999999 9999999999999999999999
Q ss_pred eeEEEEcCCCCCHHHHHHHhccCCCCC
Q psy17912 453 SILVSQYKESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 453 ~~~VI~y~~p~s~~~yiQR~GRaGR~g 479 (779)
+||+||+|.++..|+||+|| ||..
T Consensus 474 --~VI~~d~p~s~~~~~Qr~GR-gR~~ 497 (556)
T 4a2p_A 474 --LVVLYEYSGNVTKMIQVRGR-GRAA 497 (556)
T ss_dssp --EEEEETCCSCHHHHHHC--------
T ss_pred --EEEEeCCCCCHHHHHHhcCC-CCCC
Confidence 99999999999999999999 9984
No 26
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=100.00 E-value=5.8e-40 Score=405.38 Aligned_cols=279 Identities=19% Similarity=0.260 Sum_probs=231.4
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 146 MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
++| +|+|+|.++++.+++|+|++++||||||||++|+++++..+. .++++|||+||++||.|+.+.+++++
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~--------~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR--------KGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHT--------TTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHh--------cCCeEEEEechHHHHHHHHHHHHHhh
Confidence 677 699999999999999999999999999999988888877662 36789999999999999999999987
Q ss_pred ccCCceEEEEeCCCCC---hhhHHHhhcC-CeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhh----------c-C
Q psy17912 226 SATATRVACVFGGAPK---GPQVKALQTG-AEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRML----------D-M 290 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~---~~~~~~l~~~-~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~----------~-~ 290 (779)
..++++..++|+.+. ..+...+..+ ++|+|+||++|++++.. +.+.++++|||||||++. + +
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~ 222 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMMV 222 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHHHTS
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhhHhc
Confidence 778999999999988 5556666665 99999999999888764 567899999999997654 4 8
Q ss_pred CchHH-HHHHHhhcC-----------CCCceEEeecc-ccHHHHH-HHHHhccCcEEEecCCCCCCCccceEEEEEeccc
Q psy17912 291 GFEPQ-IRKIIGQIR-----------PDRQVLMWSAT-WPKEVQK-LAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQE 356 (779)
Q Consensus 291 ~f~~~-l~~il~~l~-----------~~~qilllSAT-~~~~v~~-l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~ 356 (779)
+|... +..++..++ ++.|+++|||| .|..+.. +....+. +.+.... ....++.+.+..+
T Consensus 223 gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~~-~~~~~i~~~~~~~-- 295 (1104)
T 4ddu_A 223 GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRLV-SVARNITHVRISS-- 295 (1104)
T ss_dssp SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBCC-CCCCCEEEEEESC--
T ss_pred CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccCC-CCcCCceeEEEec--
Confidence 88888 888988877 88999999999 5655442 3333322 2222222 2344556555444
Q ss_pred cchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEE-EEcCCCCHHHHHHHHHHHhcCCCcEEEE----
Q psy17912 357 HEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAV-AIHGNKSQQERDRVLNEFRIGRASILVS---- 431 (779)
Q Consensus 357 ~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~-~ihg~~~~~eR~~il~~F~~G~~~ILVA---- 431 (779)
++...|..++... ++++||||+++..++.+++.|...++.+. .+|| +|.+ ++.|++|+.+||||
T Consensus 296 -~k~~~L~~ll~~~----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg-----~rr~-l~~F~~G~~~VLVatas~ 364 (1104)
T 4ddu_A 296 -RSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE-----FEKN-FEDFKVGKINILIGVQAY 364 (1104)
T ss_dssp -CCHHHHHHHHHHH----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-----HHHH-HHHHHHTSCSEEEEETTT
T ss_pred -CHHHHHHHHHHhc----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-----cHHH-HHHHHCCCCCEEEEecCC
Confidence 4667777777763 48999999999999999999999999998 9999 2555 99999999999999
Q ss_pred ecccccccccCc-ccccccccceeEEEEcCCCC
Q psy17912 432 QYNKSQQERDRV-LNEFRIGRASILVSQYKESQ 463 (779)
Q Consensus 432 T~v~~~GIDip~-v~~~~~~~~~~~VI~y~~p~ 463 (779)
|+++++|||+|+ |+ +||+||+|.
T Consensus 365 TdvlarGIDip~~V~---------~VI~~d~P~ 388 (1104)
T 4ddu_A 365 YGKLTRGVDLPERIK---------YVIFWGTPS 388 (1104)
T ss_dssp HHHHCCSCCCTTTCC---------EEEEESCCE
T ss_pred CCeeEecCcCCCCCC---------EEEEECCCC
Confidence 999999999999 99 999999999
No 27
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=100.00 E-value=9.8e-41 Score=389.99 Aligned_cols=377 Identities=16% Similarity=0.132 Sum_probs=270.2
Q ss_pred CcccccccccCCCCCccCCCCChHHHHHhhhcCCeEEecccccccccCCCCCCCCCCCCCCcCCCCCHHHHHHHH-----
Q psy17912 70 SMSMEQINKNLYTPNHLTVSRSQGEVESYLNHHDVTVKGRYYLLRLESRPGKCVPRPIQHFEECNFPPYIMKKIY----- 144 (779)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~~g~~~~~~~~~~~~~~~p~pi~~f~~~~l~~~l~~~l~----- 144 (779)
-....++.+.....++....++.+++..........+.. +. .+++.+.+++.
T Consensus 19 ~k~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~-----------g~------------~ld~~l~ea~a~vrea 75 (844)
T 1tf5_A 19 LNRYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEK-----------GA------------TTDDLLVEAFAVVREA 75 (844)
T ss_dssp CCHHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHT-----------TC------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhc-----------CC------------ChHHHHHHHHHHHHHH
Confidence 334455555666667778888888876554432211100 00 12222333332
Q ss_pred ---HcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHH
Q psy17912 145 ---EMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVA 221 (779)
Q Consensus 145 ---~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 221 (779)
.+|| .|+|+|..++|.+++|+ |+.++||+|||++|.+|++..... ++.++||+||++||.|..+++
T Consensus 76 ~~r~lG~-~pt~VQ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~--------g~~vlVltptreLA~qd~e~~ 144 (844)
T 1tf5_A 76 SRRVTGM-FPFKVQLMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT--------GKGVHVVTVNEYLASRDAEQM 144 (844)
T ss_dssp HHHHHSC-CCCHHHHHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHH
T ss_pred HHHHcCC-CCcHHHHHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHH
Confidence 4799 99999999999999998 999999999999999999865433 457999999999999999999
Q ss_pred HHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcC------CcCCCCeeEEEEccchhhh-cCC--
Q psy17912 222 NDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQG------TINLHRTSYLVLDEADRML-DMG-- 291 (779)
Q Consensus 222 ~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~------~~~l~~i~~lViDEaH~l~-~~~-- 291 (779)
..+...+++++.+++||.+.. .+....+++|+|+||++| .+++..+ .+.++.+.++||||||+|+ +.+
T Consensus 145 ~~l~~~lgl~v~~i~gg~~~~--~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~t 222 (844)
T 1tf5_A 145 GKIFEFLGLTVGLNLNSMSKD--EKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEART 222 (844)
T ss_dssp HHHHHHTTCCEEECCTTSCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTC
T ss_pred HHHHhhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcccc
Confidence 999999999999999998653 333445689999999999 7777554 2567899999999999988 664
Q ss_pred -------------chHHHHHHHhhcC---------CCCceE-----------------EeeccccHHHHHH---H--HHh
Q psy17912 292 -------------FEPQIRKIIGQIR---------PDRQVL-----------------MWSATWPKEVQKL---A--EDF 327 (779)
Q Consensus 292 -------------f~~~l~~il~~l~---------~~~qil-----------------llSAT~~~~v~~l---~--~~~ 327 (779)
|...+..++..++ +.+|++ ++|||++..+..+ + ..+
T Consensus 223 plIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l 302 (844)
T 1tf5_A 223 PLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVA 302 (844)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHT
T ss_pred chhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHH
Confidence 5678889998886 367887 8999987533332 2 122
Q ss_pred cc---CcEE-----EecC-----------------------------CCC------------------------------
Q psy17912 328 LV---DYVQ-----LNIG-----------------------------SLN------------------------------ 340 (779)
Q Consensus 328 l~---~~~~-----i~i~-----------------------------~~~------------------------------ 340 (779)
+. +++. +.++ ...
T Consensus 303 ~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~ 382 (844)
T 1tf5_A 303 MQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEE 382 (844)
T ss_dssp CCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHH
Confidence 21 1211 0000 000
Q ss_pred -------------CCCccce--E-EEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEE
Q psy17912 341 -------------PTANHNI--V-QIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVA 404 (779)
Q Consensus 341 -------------~~~~~~i--~-~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ 404 (779)
++..... . ..+.+....+|...+..++.... ..+.++||||+|++.++.|++.|.+.|+++..
T Consensus 383 e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~-~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~v 461 (844)
T 1tf5_A 383 EFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRY-MTGQPVLVGTVAVETSELISKLLKNKGIPHQV 461 (844)
T ss_dssp HHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHHHHHHHHTTTCCCEE
T ss_pred HHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEE
Confidence 0000000 0 01233445566666666665432 24678999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEE
Q psy17912 405 IHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSH 484 (779)
Q Consensus 405 ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~ 484 (779)
+||++.+.+|..+.+.|+.| .|+|||++|+||+|++.... .......+||+|+.|.+.+.|+||+||+||+|..|.+
T Consensus 462 Lhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~-V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG~~G~s 538 (844)
T 1tf5_A 462 LNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEG-VKELGGLAVVGTERHESRRIDNQLRGRSGRQGDPGIT 538 (844)
T ss_dssp ECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTT-SGGGTSEEEEESSCCSSHHHHHHHHTTSSGGGCCEEE
T ss_pred eeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccch-hhhcCCcEEEEecCCCCHHHHHhhcCccccCCCCCeE
Confidence 99999988888777777655 69999999999999982110 0000123999999999999999999999999988854
Q ss_pred EE
Q psy17912 485 YN 486 (779)
Q Consensus 485 ~~ 486 (779)
++
T Consensus 539 ~~ 540 (844)
T 1tf5_A 539 QF 540 (844)
T ss_dssp EE
T ss_pred EE
Confidence 43
No 28
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=1.9e-40 Score=384.72 Aligned_cols=317 Identities=21% Similarity=0.210 Sum_probs=219.7
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
-+|+|+|.++++.+++++++++++|||+|||++|++|++..+...+. ..++++|||+||++|+.|+.+.+++++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC---GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 36999999999999999999999999999999999999998876431 236689999999999999999999999888
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCc-CCCCeeEEEEccchhhhcCC-chHHHHHHHhhc---
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTI-NLHRTSYLVLDEADRMLDMG-FEPQIRKIIGQI--- 303 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~-~l~~i~~lViDEaH~l~~~~-f~~~l~~il~~l--- 303 (779)
++++..++|+.....+...+..+++|+|+||++|.+.+..+.. .+.++++|||||||++.+.+ +...+...+...
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~ 159 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGE 159 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTSS
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhhhcc
Confidence 9999999999987777667767789999999999999988776 78899999999999998775 232232333322
Q ss_pred --CCCCceEEeeccccHH-----------HHHHHHHhccCcEEEecCCC----CCCCccceEEEEEec------------
Q psy17912 304 --RPDRQVLMWSATWPKE-----------VQKLAEDFLVDYVQLNIGSL----NPTANHNIVQIVDVC------------ 354 (779)
Q Consensus 304 --~~~~qilllSAT~~~~-----------v~~l~~~~l~~~~~i~i~~~----~~~~~~~i~~~~~~~------------ 354 (779)
.+..++++||||++.. +..+... +........... ...............
T Consensus 160 ~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
T 3tbk_A 160 SRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAA-LDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCIIS 238 (555)
T ss_dssp CCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHH-TTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHHH
T ss_pred ccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHh-cCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHHH
Confidence 2567999999998431 1111111 111111110000 000000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy17912 355 -------------------------------------------------------------------------------- 354 (779)
Q Consensus 355 -------------------------------------------------------------------------------- 354 (779)
T Consensus 239 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 318 (555)
T 3tbk_A 239 QLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIISE 318 (555)
T ss_dssp HHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence
Q ss_pred -------------------------------------------------cccchhHHHHHHHHHhc-cCCCCcEEEEecc
Q psy17912 355 -------------------------------------------------QEHEKDYKLQGLLSQIG-SERTSKTIIFVET 384 (779)
Q Consensus 355 -------------------------------------------------~~~~k~~~L~~ll~~i~-~~~~~kvLVF~~s 384 (779)
....|...|..++.... .....++||||++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~ 398 (555)
T 3tbk_A 319 DAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVKT 398 (555)
T ss_dssp HSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred hhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeCc
Confidence 01234455555555432 2356899999999
Q ss_pred hhHHHHHHHHHHhCC------------CeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEecccccccccCccccccccc
Q psy17912 385 KRKADDITRSVRNKG------------WAAVAIHGNKSQQERDRVLNEFRI-GRASILVSQYNKSQQERDRVLNEFRIGR 451 (779)
Q Consensus 385 ~~~ae~L~~~L~~~g------------~~v~~ihg~~~~~eR~~il~~F~~-G~~~ILVAT~v~~~GIDip~v~~~~~~~ 451 (779)
+..++.|++.|...+ .....+||+|++.+|.++++.|++ |+++|||||+++++|||+|.++
T Consensus 399 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~------ 472 (555)
T 3tbk_A 399 RALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDIAECN------ 472 (555)
T ss_dssp HHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEETTSCS------
T ss_pred HHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCccccCC------
Confidence 999999999999763 345566679999999999999999 9999999999999999999999
Q ss_pred ceeEEEEcCCCCCHHHHHHHhccCCCCC
Q psy17912 452 ASILVSQYKESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 452 ~~~~VI~y~~p~s~~~yiQR~GRaGR~g 479 (779)
+||+||+|.++..|+||+|| ||..
T Consensus 473 ---~VI~~d~p~s~~~~~Qr~GR-gR~~ 496 (555)
T 3tbk_A 473 ---LVILYEYVGNVIKMIQTRGR-GRAR 496 (555)
T ss_dssp ---EEEEESCCSSCCCEECSSCC-CTTT
T ss_pred ---EEEEeCCCCCHHHHHHhcCc-CcCC
Confidence 99999999999999999999 9983
No 29
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=3e-39 Score=395.92 Aligned_cols=342 Identities=13% Similarity=0.087 Sum_probs=259.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc
Q psy17912 147 GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 147 g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 226 (779)
+| .|+|+|.++++.+++++++++++|||+|||++|++++...+.. ++++||++|+++|+.|+++.+.++..
T Consensus 37 ~f-~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~--------g~~vlvl~PtraLa~Q~~~~l~~~~~ 107 (997)
T 4a4z_A 37 PF-ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRN--------MTKTIYTSPIKALSNQKFRDFKETFD 107 (997)
T ss_dssp SS-CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHT--------TCEEEEEESCGGGHHHHHHHHHTTC-
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhc--------CCeEEEEeCCHHHHHHHHHHHHHHcC
Confidence 44 4899999999999999999999999999999999998876543 56899999999999999999988754
Q ss_pred cCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCC
Q psy17912 227 ATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPD 306 (779)
Q Consensus 227 ~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~ 306 (779)
++.+..++|+.... ..++|+|+||++|.+++......+.++++|||||||++.+++|...+..++..++++
T Consensus 108 --~~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~ 178 (997)
T 4a4z_A 108 --DVNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQH 178 (997)
T ss_dssp ---CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTT
T ss_pred --CCeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcccC
Confidence 67888888887543 347999999999999998887788999999999999999999999999999999999
Q ss_pred CceEEeeccccHHHHHHHHHhc---cCcEEEecCCCCCCCccceEEEEE-------eccc--------------------
Q psy17912 307 RQVLMWSATWPKEVQKLAEDFL---VDYVQLNIGSLNPTANHNIVQIVD-------VCQE-------------------- 356 (779)
Q Consensus 307 ~qilllSAT~~~~v~~l~~~~l---~~~~~i~i~~~~~~~~~~i~~~~~-------~~~~-------------------- 356 (779)
.|+++||||+|+.. ++...+. ..++.+......+. .+...+. ....
T Consensus 179 v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~r~~---pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (997)
T 4a4z_A 179 VKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPKRPV---PLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGES 254 (997)
T ss_dssp CEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSSCSS---CEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---
T ss_pred CCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCCCCc---cceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccc
Confidence 99999999997653 3333222 12333222221111 1111100 0000
Q ss_pred ---------------------------------------------------------------cchhHHHHHHHHHhccC
Q psy17912 357 ---------------------------------------------------------------HEKDYKLQGLLSQIGSE 373 (779)
Q Consensus 357 ---------------------------------------------------------------~~k~~~L~~ll~~i~~~ 373 (779)
......+..++..+...
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~ 334 (997)
T 4a4z_A 255 AKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKR 334 (997)
T ss_dssp --------------------------------------------------------------CCCCTTHHHHHHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhC
Confidence 00112344555555555
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCC---------------------------------------eEEEEcCCCCHHHH
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGW---------------------------------------AAVAIHGNKSQQER 414 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~---------------------------------------~v~~ihg~~~~~eR 414 (779)
...++||||++++.|+.++..|...++ .+..+||+|++.+|
T Consensus 335 ~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R 414 (997)
T 4a4z_A 335 ELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVK 414 (997)
T ss_dssp TCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHH
T ss_pred CCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHH
Confidence 678999999999999999999977655 47999999999999
Q ss_pred HHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCC---------CHHHHHHHhccCCCCC--CeEE
Q psy17912 415 DRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQ---------QKRDRVLNEFRIGRAS--ILVS 483 (779)
Q Consensus 415 ~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~---------s~~~yiQR~GRaGR~g--~~~~ 483 (779)
..+++.|++|.++|||||+++++|||+|.+ .||.++.|. ++.+|+||+|||||.| ..|.
T Consensus 415 ~~v~~~F~~G~~kVLvAT~~~a~GIDiP~~----------~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~~~G~ 484 (997)
T 4a4z_A 415 ELIEILFSKGFIKVLFATETFAMGLNLPTR----------TVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLDSTGT 484 (997)
T ss_dssp HHHHHHHHTTCCSEEEECTHHHHSCCCCCS----------EEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTCSSEE
T ss_pred HHHHHHHHCCCCcEEEEchHhhCCCCCCCc----------eEEEeccccccCccCCCCCHHHHhHHhcccccCCCCcceE
Confidence 999999999999999999999999999994 445555544 9999999999999998 5565
Q ss_pred EEEcC--hHHHHHHHHhhhccccceeeccccccHHHHHH
Q psy17912 484 HYNKS--QQERDRVLNEFRIGRASILVSHYNKSQQERDR 520 (779)
Q Consensus 484 ~~~~~--~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~ 520 (779)
++... .......+..+..+....+.+.+....+..-.
T Consensus 485 vi~l~~~~~~~~~~~~~~i~~~~~~l~s~~~~~ynm~l~ 523 (997)
T 4a4z_A 485 VIVMAYNSPLSIATFKEVTMGVPTRLQSQFRLTYNMILN 523 (997)
T ss_dssp EEEECCSSCCCHHHHHHHHHSCCCCCCCCCCCCHHHHHH
T ss_pred EEEecCCCcchHHHHHHHhcCCCcccccccccchHHHHH
Confidence 55544 23334556666666666666665544443333
No 30
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=1.2e-39 Score=394.68 Aligned_cols=321 Identities=18% Similarity=0.201 Sum_probs=201.0
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 146 MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
+|+..|+|+|.++++.+++++++|+++|||+|||++|++|++..+...+ ...++++|||+||++|+.|+.+.+++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~---~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 5788999999999999999999999999999999999999999887643 1236689999999999999999999998
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCc-CCCCeeEEEEccchhhhcCCchHH-HHHHHhhc
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTI-NLHRTSYLVLDEADRMLDMGFEPQ-IRKIIGQI 303 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~-~l~~i~~lViDEaH~l~~~~f~~~-l~~il~~l 303 (779)
...++++..++|+.........+..+++|+|+||++|.+.+..+.+ .+.++++|||||||++...+.... +..++...
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~ 400 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHH
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8889999999999987777777777899999999999999987766 788999999999999887653222 22222221
Q ss_pred ----CCCCceEEeeccccH-----------HHHHHHHHhccCcEEEecCCCC---C-CCccceEE-EEE-----------
Q psy17912 304 ----RPDRQVLMWSATWPK-----------EVQKLAEDFLVDYVQLNIGSLN---P-TANHNIVQ-IVD----------- 352 (779)
Q Consensus 304 ----~~~~qilllSAT~~~-----------~v~~l~~~~l~~~~~i~i~~~~---~-~~~~~i~~-~~~----------- 352 (779)
.+..++++||||++. .+..+...+....+........ . ........ .+.
T Consensus 401 ~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (797)
T 4a2q_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (797)
T ss_dssp HTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHHHH
T ss_pred hccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHHHH
Confidence 566899999999842 2222221111111110000000 0 00000000 000
Q ss_pred ---------------------------e--------c-------------------------------------------
Q psy17912 353 ---------------------------V--------C------------------------------------------- 354 (779)
Q Consensus 353 ---------------------------~--------~------------------------------------------- 354 (779)
+ +
T Consensus 481 ~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~ 560 (797)
T 4a2q_A 481 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (797)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0 0
Q ss_pred -------------------------------------------------cccchhHHHHHHHHHh-ccCCCCcEEEEecc
Q psy17912 355 -------------------------------------------------QEHEKDYKLQGLLSQI-GSERTSKTIIFVET 384 (779)
Q Consensus 355 -------------------------------------------------~~~~k~~~L~~ll~~i-~~~~~~kvLVF~~s 384 (779)
....|...|..++... ....+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~ 640 (797)
T 4a2q_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (797)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEESS
T ss_pred cccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEECc
Confidence 0122444455555432 22456899999999
Q ss_pred hhHHHHHHHHHHhC------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEecccccccccCccccccccc
Q psy17912 385 KRKADDITRSVRNK------------GWAAVAIHGNKSQQERDRVLNEFRI-GRASILVSQYNKSQQERDRVLNEFRIGR 451 (779)
Q Consensus 385 ~~~ae~L~~~L~~~------------g~~v~~ihg~~~~~eR~~il~~F~~-G~~~ILVAT~v~~~GIDip~v~~~~~~~ 451 (779)
+..++.|++.|+.. |..+..+||+|++.+|..+++.|++ |+++|||||+++++|||+|.++
T Consensus 641 ~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~------ 714 (797)
T 4a2q_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCN------ 714 (797)
T ss_dssp HHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CCCS------
T ss_pred HHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchhCC------
Confidence 99999999999873 5567788999999999999999999 9999999999999999999999
Q ss_pred ceeEEEEcCCCCCHHHHHHHhccCCCCC
Q psy17912 452 ASILVSQYKESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 452 ~~~~VI~y~~p~s~~~yiQR~GRaGR~g 479 (779)
+||+|++|.++..|+||+|| ||..
T Consensus 715 ---~VI~yd~p~s~~~~iQr~GR-GR~~ 738 (797)
T 4a2q_A 715 ---LVVLYEYSGNVTKMIQVRGR-GRAA 738 (797)
T ss_dssp ---EEEEESCCSCHHHHHTC--------
T ss_pred ---EEEEeCCCCCHHHHHHhcCC-CCCC
Confidence 99999999999999999999 9984
No 31
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=1.2e-38 Score=361.70 Aligned_cols=313 Identities=21% Similarity=0.237 Sum_probs=241.4
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 229 (779)
.|+|+|.++++.++++ ++++.+|||+|||++++++++..+.. .++++|||+|+++|+.|+.+.+.++.....
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 6899999999999999 99999999999999999999887762 245799999999999999999999875445
Q ss_pred ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCce
Q psy17912 230 TRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQV 309 (779)
Q Consensus 230 l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qi 309 (779)
.++..++|+........ ....++|+|+||+.|...+..+.+.+.++++|||||||++.+......+...+....+..++
T Consensus 81 ~~v~~~~g~~~~~~~~~-~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~ 159 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSK-AWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLV 159 (494)
T ss_dssp GGEEEECSCSCHHHHHH-HHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHCSSCCE
T ss_pred hheEEeeCCcchhhhhh-hccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcCCCCeE
Confidence 68888888876654333 33457999999999999998877788999999999999988665445555666666778999
Q ss_pred EEeeccccH---HHHHHHHHhccCcEEEecCCCCCC---CccceEEEEEec-----------------------------
Q psy17912 310 LMWSATWPK---EVQKLAEDFLVDYVQLNIGSLNPT---ANHNIVQIVDVC----------------------------- 354 (779)
Q Consensus 310 lllSAT~~~---~v~~l~~~~l~~~~~i~i~~~~~~---~~~~i~~~~~~~----------------------------- 354 (779)
++||||++. .+..+...+............... ............
T Consensus 160 l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (494)
T 1wp9_A 160 IGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLL 239 (494)
T ss_dssp EEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSS
T ss_pred EEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999863 344444433322222211110000 000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy17912 355 -------------------------------------------------------------------------------- 354 (779)
Q Consensus 355 -------------------------------------------------------------------------------- 354 (779)
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 319 (494)
T 1wp9_A 240 ESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEI 319 (494)
T ss_dssp SCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred cccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhh
Confidence
Q ss_pred --------------------cccchhHHHHHHHHHhcc-CCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcC------
Q psy17912 355 --------------------QEHEKDYKLQGLLSQIGS-ERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHG------ 407 (779)
Q Consensus 355 --------------------~~~~k~~~L~~ll~~i~~-~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg------ 407 (779)
....|...+.+++..... ..+.++||||+++..++.+++.|...++.+..+||
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~ 399 (494)
T 1wp9_A 320 FSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 399 (494)
T ss_dssp HTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSSCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccccccc
Confidence 122344455555554321 35789999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCC
Q psy17912 408 --NKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASI 480 (779)
Q Consensus 408 --~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~ 480 (779)
+++..+|.++++.|++|+.+|||||+++++|+|+|.++ +||+|++|.++..|+||+||+||.|.
T Consensus 400 ~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gldl~~~~---------~Vi~~d~~~~~~~~~Qr~GR~~R~g~ 465 (494)
T 1wp9_A 400 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVD---------LVVFYEPVPSAIRSIQRRGRTGRHMP 465 (494)
T ss_dssp -----CCHHHHHHHHHHHTSCSEEEECGGGGGGGGSTTCC---------EEEESSCCHHHHHHHHHHTTSCSCCC
T ss_pred cccCCHHHHHHHHHHHhcCCceEEEECCccccCCCchhCC---------EEEEeCCCCCHHHHHHHHhhccCCCC
Confidence 99999999999999999999999999999999999998 99999999999999999999999997
No 32
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=100.00 E-value=7.7e-40 Score=404.41 Aligned_cols=281 Identities=19% Similarity=0.223 Sum_probs=224.5
Q ss_pred HHHH-HcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHH
Q psy17912 141 KKIY-EMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIET 219 (779)
Q Consensus 141 ~~l~-~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~ 219 (779)
+.+. .+||. | |+|.++++.+++|+|++++||||||||+ |.+|++..+.. .++++|||+||++||.|+.+
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHH
Confidence 3344 38999 9 9999999999999999999999999998 99999888765 35789999999999999999
Q ss_pred HHHHhcccCCc----eEEEEeCCCCChhh---HHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCc
Q psy17912 220 VANDFGSATAT----RVACVFGGAPKGPQ---VKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGF 292 (779)
Q Consensus 220 ~~~~~~~~~~l----~v~~~~gg~~~~~~---~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f 292 (779)
.+++++...++ ++..++|+.+...+ ...+.. ++|+|+||++|++++.. +.++++|||||||++++ |
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~--~ 190 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILK--A 190 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHT--S
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhh--c
Confidence 99999988888 89999999988763 344455 89999999999987754 67899999999999998 4
Q ss_pred hHHHHHHHhhc-----------CCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhH
Q psy17912 293 EPQIRKIIGQI-----------RPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDY 361 (779)
Q Consensus 293 ~~~l~~il~~l-----------~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~ 361 (779)
...+..++..+ +...|++++|||+++. ..+...++.++..+.+.... ....++.+.+. ..++..
T Consensus 191 ~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~~-~~~~~i~~~~~---~~~k~~ 265 (1054)
T 1gku_B 191 SKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSSR-ITVRNVEDVAV---NDESIS 265 (1054)
T ss_dssp THHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCCE-ECCCCEEEEEE---SCCCTT
T ss_pred cccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCcc-cCcCCceEEEe---chhHHH
Confidence 66777776655 3568999999999887 54444444444444433322 22234444433 345666
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEE----eccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVS----QYNKSQ 437 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVA----T~v~~~ 437 (779)
.+..++... +.++||||++++.|+.+++.|+.. +.+..+||++ ..+++.|++|+.+|||| |+++++
T Consensus 266 ~L~~ll~~~----~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~r 335 (1054)
T 1gku_B 266 TLSSILEKL----GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVR 335 (1054)
T ss_dssp TTHHHHTTS----CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------C
T ss_pred HHHHHHhhc----CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEe
Confidence 666666543 578999999999999999999988 9999999998 47899999999999999 899999
Q ss_pred ccccCcc-cccccccceeEEEEcCCC
Q psy17912 438 QERDRVL-NEFRIGRASILVSQYKES 462 (779)
Q Consensus 438 GIDip~v-~~~~~~~~~~~VI~y~~p 462 (779)
|||+|+| + +||+|+.|
T Consensus 336 GIDip~VI~---------~VI~~~~P 352 (1054)
T 1gku_B 336 GLDLPERIR---------FAVFVGCP 352 (1054)
T ss_dssp CSCCTTTCC---------EEEEESCC
T ss_pred ccccCCccc---------EEEEeCCC
Confidence 9999995 8 99999999
No 33
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=5.1e-40 Score=392.98 Aligned_cols=327 Identities=20% Similarity=0.211 Sum_probs=231.3
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHH-HHHHHHhccc
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQI-ETVANDFGSA 227 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~-~~~~~~~~~~ 227 (779)
-+|+|+|.++++.+++++++|+++|||+|||++|++|++..+...+. ...++++|||+|+++|+.|+ .+.+++++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 37999999999999999999999999999999999999988765321 11235799999999999999 9999998765
Q ss_pred CCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHH------HcCCcCCCCeeEEEEccchhhhcCC-chHHHHHHH
Q psy17912 228 TATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYL------EQGTINLHRTSYLVLDEADRMLDMG-FEPQIRKII 300 (779)
Q Consensus 228 ~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l------~~~~~~l~~i~~lViDEaH~l~~~~-f~~~l~~il 300 (779)
++++..++|+.........+...++|+|+||++|.+.+ ....+.+..+++|||||||++...+ +...+...+
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l 162 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYL 162 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHH
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHH
Confidence 58899999998887777777778999999999999988 3445678899999999999986544 333333232
Q ss_pred hh----cC---------CCCceEEeeccccHH-----------HHHHHHHhccCcEEEecCC---CCCCCccceEEEEEe
Q psy17912 301 GQ----IR---------PDRQVLMWSATWPKE-----------VQKLAEDFLVDYVQLNIGS---LNPTANHNIVQIVDV 353 (779)
Q Consensus 301 ~~----l~---------~~~qilllSAT~~~~-----------v~~l~~~~l~~~~~i~i~~---~~~~~~~~i~~~~~~ 353 (779)
.. .. +..++++||||++.. +..+...+....+...... ..............+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~ 242 (699)
T 4gl2_A 163 MQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIA 242 (699)
T ss_dssp HHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEE
T ss_pred HhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEc
Confidence 22 11 678999999998751 1222221111000000000 000000000000000
Q ss_pred cc------------------------------------------------------------------------------
Q psy17912 354 CQ------------------------------------------------------------------------------ 355 (779)
Q Consensus 354 ~~------------------------------------------------------------------------------ 355 (779)
..
T Consensus 243 ~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (699)
T 4gl2_A 243 DATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDA 322 (699)
T ss_dssp C-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00
Q ss_pred --------------------------------------------------------ccchhHHHHHHHHHh-ccCC-CCc
Q psy17912 356 --------------------------------------------------------EHEKDYKLQGLLSQI-GSER-TSK 377 (779)
Q Consensus 356 --------------------------------------------------------~~~k~~~L~~ll~~i-~~~~-~~k 377 (779)
...|...|..++... ...+ ..+
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~ 402 (699)
T 4gl2_A 323 YTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESAR 402 (699)
T ss_dssp HHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCc
Confidence 112222333344332 2223 789
Q ss_pred EEEEecchhHHHHHHHHHHhC------CCeEEEEcCC--------CCHHHHHHHHHHHhcCCCcEEEEecccccccccCc
Q psy17912 378 TIIFVETKRKADDITRSVRNK------GWAAVAIHGN--------KSQQERDRVLNEFRIGRASILVSQYNKSQQERDRV 443 (779)
Q Consensus 378 vLVF~~s~~~ae~L~~~L~~~------g~~v~~ihg~--------~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~ 443 (779)
+||||+++..++.|++.|... |+.+..+||+ |++.+|.++++.|++|+.+|||||+++++|||+|.
T Consensus 403 ~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GIDip~ 482 (699)
T 4gl2_A 403 GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKE 482 (699)
T ss_dssp EEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSCCCS
T ss_pred EEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCcccc
Confidence 999999999999999999987 8999999999 99999999999999999999999999999999999
Q ss_pred ccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEc
Q psy17912 444 LNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNK 487 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~ 487 (779)
++ +||+||+|.++.+|+||+|||||.|...+++..
T Consensus 483 v~---------~VI~~d~p~s~~~~~Qr~GRArr~g~~~~l~~~ 517 (699)
T 4gl2_A 483 CN---------IVIRYGLVTNEIAMVQARGRARADESTYVLVAH 517 (699)
T ss_dssp CC---------CCEEESCCCCHHHHHHHHTTSCSSSCEEEEEEE
T ss_pred CC---------EEEEeCCCCCHHHHHHHcCCCCCCCceEEEEEe
Confidence 99 999999999999999999999998866666654
No 34
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=1.1e-38 Score=390.77 Aligned_cols=326 Identities=18% Similarity=0.167 Sum_probs=201.4
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 146 MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
.++..|+|+|.++++.+++|+++++++|||+|||++|++|++..+...+ ...++++|||+||++|+.|+.+.+++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~---~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMP---AGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCC---SSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhcc---ccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999999988776532 1235689999999999999999999998
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCc-CCCCeeEEEEccchhhhcCCc-hHHHHHHHhh-
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTI-NLHRTSYLVLDEADRMLDMGF-EPQIRKIIGQ- 302 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~-~l~~i~~lViDEaH~l~~~~f-~~~l~~il~~- 302 (779)
...++++..++|+.....+...+..+++|+|+||++|.+.+....+ .+.++++|||||||++...+. ...+..++..
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~ 400 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQK 400 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHHHHHHHh
Confidence 8889999999999877666556666789999999999999987766 788999999999999887653 2222233222
Q ss_pred ---cCCCCceEEeeccccH-----------HHHHHHHHh------------------ccCcEEEecCCCCCCCcc-----
Q psy17912 303 ---IRPDRQVLMWSATWPK-----------EVQKLAEDF------------------LVDYVQLNIGSLNPTANH----- 345 (779)
Q Consensus 303 ---l~~~~qilllSAT~~~-----------~v~~l~~~~------------------l~~~~~i~i~~~~~~~~~----- 345 (779)
..+..++++||||++. .+..+...+ ...+..............
T Consensus 401 ~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~l 480 (936)
T 4a2w_A 401 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 480 (936)
T ss_dssp HTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHHH
T ss_pred hccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHHH
Confidence 1456899999999841 122221111 111111100000000000
Q ss_pred ------------c------eEEE--EEec---------------------------------------------------
Q psy17912 346 ------------N------IVQI--VDVC--------------------------------------------------- 354 (779)
Q Consensus 346 ------------~------i~~~--~~~~--------------------------------------------------- 354 (779)
. +... ....
T Consensus 481 ~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~~ 560 (936)
T 4a2w_A 481 SNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 560 (936)
T ss_dssp HHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 0 0000 0000
Q ss_pred -------------------------------------------------cccchhHHHHHHHHHhc-cCCCCcEEEEecc
Q psy17912 355 -------------------------------------------------QEHEKDYKLQGLLSQIG-SERTSKTIIFVET 384 (779)
Q Consensus 355 -------------------------------------------------~~~~k~~~L~~ll~~i~-~~~~~kvLVF~~s 384 (779)
....|...|..++.... ...+.++||||++
T Consensus 561 ~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t 640 (936)
T 4a2w_A 561 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 640 (936)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEESS
T ss_pred chhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence 01223344444554432 2356899999999
Q ss_pred hhHHHHHHHHHHhC------------CCeEEEEcCCCCHHHHHHHHHHHhc-CCCcEEEEecccccccccCccccccccc
Q psy17912 385 KRKADDITRSVRNK------------GWAAVAIHGNKSQQERDRVLNEFRI-GRASILVSQYNKSQQERDRVLNEFRIGR 451 (779)
Q Consensus 385 ~~~ae~L~~~L~~~------------g~~v~~ihg~~~~~eR~~il~~F~~-G~~~ILVAT~v~~~GIDip~v~~~~~~~ 451 (779)
+..++.|++.|... |..+..+||+|++.+|.++++.|++ |+++|||||+++++|||+|.++
T Consensus 641 ~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~------ 714 (936)
T 4a2w_A 641 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQCN------ 714 (936)
T ss_dssp HHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------CCCCS------
T ss_pred HHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcchhCC------
Confidence 99999999999986 5666778999999999999999999 9999999999999999999999
Q ss_pred ceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEE
Q psy17912 452 ASILVSQYKESQQKRDRVLNEFRIGRASILVSH 484 (779)
Q Consensus 452 ~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~ 484 (779)
+||+||+|.++.+|+||+|| ||.....++
T Consensus 715 ---~VI~yD~p~s~~~~iQr~GR-GR~~~g~vi 743 (936)
T 4a2w_A 715 ---LVVLYEYSGNVTKMIQVRGR-GRAAGSKCI 743 (936)
T ss_dssp ---EEEEESCCSCSHHHHCC--------CCCEE
T ss_pred ---EEEEeCCCCCHHHHHHhcCC-CCCCCCEEE
Confidence 99999999999999999999 998543333
No 35
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=100.00 E-value=4.6e-38 Score=366.42 Aligned_cols=322 Identities=19% Similarity=0.169 Sum_probs=222.0
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 146 MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
+|. .|+|+|..+++.+++|+ |+.++||+|||++|.+|++..... ++.++||+||++||.|+++++..++
T Consensus 71 lg~-~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~--------g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FGM-RHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HSC-CCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT--------SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHHc--------CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 564 99999999999999998 999999999999999999976543 4579999999999999999999999
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcCC------cCCCCeeEEEEccchhhh-cCC------
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQGT------INLHRTSYLVLDEADRML-DMG------ 291 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~~------~~l~~i~~lViDEaH~l~-~~~------ 291 (779)
..+++++.+++||.+.. .+....+++|+|+||++| .+++..+. ..++.+.++||||||+|+ +.+
T Consensus 140 ~~lgl~v~~i~GG~~~~--~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpLIi 217 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAP--AKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPLII 217 (853)
T ss_dssp HHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEEEE
T ss_pred HhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccccc
Confidence 99999999999998753 344455689999999999 78887653 567899999999999998 543
Q ss_pred ---------chHHHHHHHhhcCC--------------------CCceE------------------------EeeccccH
Q psy17912 292 ---------FEPQIRKIIGQIRP--------------------DRQVL------------------------MWSATWPK 318 (779)
Q Consensus 292 ---------f~~~l~~il~~l~~--------------------~~qil------------------------llSAT~~~ 318 (779)
|...+..++..+++ .+|++ ++|||.+.
T Consensus 218 Sg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~~~ 297 (853)
T 2fsf_A 218 SGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPANIM 297 (853)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred cCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCcccch
Confidence 55677788877754 45654 89999764
Q ss_pred HHHHH---H--HHhcc--------Cc-----------------------------EEEecCCCCCCCccceE--------
Q psy17912 319 EVQKL---A--EDFLV--------DY-----------------------------VQLNIGSLNPTANHNIV-------- 348 (779)
Q Consensus 319 ~v~~l---~--~~~l~--------~~-----------------------------~~i~i~~~~~~~~~~i~-------- 348 (779)
.+..+ + ..++. +. ..+.+.....+ ...+.
T Consensus 298 ~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e~~t-la~It~qnyfr~Y 376 (853)
T 2fsf_A 298 LMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNENQT-LASITFQNYFRLY 376 (853)
T ss_dssp -----------------------------------------------------------CCCCCEE-EEEEEHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceecccccc-cceeehHHHHhhh
Confidence 22221 1 11111 00 01111110000 00011
Q ss_pred ---------------------------------------EEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHH
Q psy17912 349 ---------------------------------------QIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKAD 389 (779)
Q Consensus 349 ---------------------------------------~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae 389 (779)
..+.+.....|...+...+.... ..+.++||||+|++.++
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~-~~gqpvLVft~sie~se 455 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERT-AKGQPVLVGTISIEKSE 455 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH-TTTCCEEEEESSHHHHH
T ss_pred hhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHh-cCCCCEEEEECcHHHHH
Confidence 01123344456666666665432 34678999999999999
Q ss_pred HHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccc------------------------
Q psy17912 390 DITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLN------------------------ 445 (779)
Q Consensus 390 ~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~------------------------ 445 (779)
.|++.|++.|+++..+||++.+.++..+.++|+.| .|+|||++|+||+|++...
T Consensus 456 ~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~ 533 (853)
T 2fsf_A 456 LVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADW 533 (853)
T ss_dssp HHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHh
Confidence 99999999999999999999999998888999988 6999999999999998631
Q ss_pred ------ccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEE
Q psy17912 446 ------EFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYN 486 (779)
Q Consensus 446 ------~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~ 486 (779)
+-.++. .+||+|+.|.+...|.||+||+||.|..|.+.+
T Consensus 534 ~~~~~~V~~~GG--l~VI~te~pes~riy~qr~GRTGRqGd~G~s~~ 578 (853)
T 2fsf_A 534 QVRHDAVLEAGG--LHIIGTERHESRRIDNQLRGRSGRQGDAGSSRF 578 (853)
T ss_dssp HHHHHHHHHTTS--EEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEE
T ss_pred hhhhhHHHhcCC--cEEEEccCCCCHHHHHhhccccccCCCCeeEEE
Confidence 000111 499999999999999999999999998886443
No 36
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=1.1e-37 Score=397.57 Aligned_cols=340 Identities=15% Similarity=0.111 Sum_probs=250.1
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhc-CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHH
Q psy17912 135 FPPYIMKKIYEMGFQAPTAIQAQGWPIALS-GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTREL 213 (779)
Q Consensus 135 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~-g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~L 213 (779)
|.+...+.+...+|..|+|+|.++++.++. ++|++++||||||||++|.+|++..+... .+.++||++|+++|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 556778888888999999999999999975 57899999999999999999999998764 24579999999999
Q ss_pred HHHHHHHHHH-hcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcC--CcCCCCeeEEEEccchhhhcC
Q psy17912 214 AQQIETVAND-FGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQG--TINLHRTSYLVLDEADRMLDM 290 (779)
Q Consensus 214 a~Q~~~~~~~-~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~--~~~l~~i~~lViDEaH~l~~~ 290 (779)
|.|+++.+++ +....++++..++|+.... .+. ..+++|+|||||++..++.+. ...++++++||+||+|.+.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~--~~~-~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTD--LKL-LGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHH--HHH-HHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcc--hhh-cCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 9999998865 6677899999999876432 222 234799999999998777542 234788999999999988764
Q ss_pred CchHHHHHHHh-------hcCCCCceEEeeccccHHHHHHHHHhccCc--EEEecCCCCCCCccceEEEEEeccccchhH
Q psy17912 291 GFEPQIRKIIG-------QIRPDRQVLMWSATWPKEVQKLAEDFLVDY--VQLNIGSLNPTANHNIVQIVDVCQEHEKDY 361 (779)
Q Consensus 291 ~f~~~l~~il~-------~l~~~~qilllSAT~~~~v~~l~~~~l~~~--~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~ 361 (779)
.+..++.++. ..+++.|+|+||||+++. ++++..+..+. ... +.... .+..+...+..........
T Consensus 1062 -rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~-~dla~WL~~~~~~~~~-~~~~~--RPvpL~~~i~~~~~~~~~~ 1136 (1724)
T 4f92_B 1062 -NGPVLEVICSRMRYISSQIERPIRIVALSSSLSNA-KDVAHWLGCSATSTFN-FHPNV--RPVPLELHIQGFNISHTQT 1136 (1724)
T ss_dssp -THHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTH-HHHHHHHTCCSTTEEE-CCGGG--CSSCEEEEEEEECCCSHHH
T ss_pred -CCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCH-HHHHHHhCCCCCCeEE-eCCCC--CCCCeEEEEEeccCCCchh
Confidence 5555554443 346789999999999863 44444332222 211 11111 1112333333222222222
Q ss_pred H-------HHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC----------------------------------CC
Q psy17912 362 K-------LQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK----------------------------------GW 400 (779)
Q Consensus 362 ~-------L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~----------------------------------g~ 400 (779)
. +...+... ...+++||||+|++.|+.++..|... ..
T Consensus 1137 ~~~~~~~~~~~~i~~~--~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~ 1214 (1724)
T 4f92_B 1137 RLLSMAKPVYHAITKH--SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLN 1214 (1724)
T ss_dssp HHHTTHHHHHHHHHHH--CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHT
T ss_pred hhhhhcchHHHHHHHh--cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhC
Confidence 2 22223322 35789999999999999988877421 13
Q ss_pred eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEE----c------CCCCCHHHHHH
Q psy17912 401 AAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQ----Y------KESQQKRDRVL 470 (779)
Q Consensus 401 ~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~----y------~~p~s~~~yiQ 470 (779)
.++++||+|++.+|..+++.|++|.++|||||+++++|||+|... +||. | ..|.++.+|+|
T Consensus 1215 GIa~hHagL~~~~R~~VE~lF~~G~i~VLvaT~tlA~GVnlPa~~---------VVI~~~~~~dg~~~~~~~~s~~~~~Q 1285 (1724)
T 4f92_B 1215 GVGYLHEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHL---------VIIMDTQYYNGKIHAYVDYPIYDVLQ 1285 (1724)
T ss_dssp TEEEECTTSCHHHHHHHHHHHHHTSBCEEEEEGGGSSSCCCCBSE---------EEEECSEEEETTTTEEEECCHHHHHH
T ss_pred CEEEECCCCCHHHHHHHHHHHHCCCCeEEEEChHHHcCCCCCccE---------EEEecCccccCcccccCCCCHHHHHH
Confidence 489999999999999999999999999999999999999999876 6663 2 23678999999
Q ss_pred HhccCCCCCC--eEEEEEcChHHHHHHHHhh
Q psy17912 471 NEFRIGRASI--LVSHYNKSQQERDRVLNEF 499 (779)
Q Consensus 471 R~GRaGR~g~--~~~~~~~~~~e~~~~l~e~ 499 (779)
|+|||||.|. .|.++.+....+...+..+
T Consensus 1286 m~GRAGR~g~d~~G~avll~~~~~~~~~~~l 1316 (1724)
T 4f92_B 1286 MVGHANRPLQDDEGRCVIMCQGSKKDFFKKF 1316 (1724)
T ss_dssp HHTTBCCTTTCSCEEEEEEEEGGGHHHHHHH
T ss_pred hhccccCCCCCCceEEEEEecchHHHHHHHH
Confidence 9999999985 5666666555555555544
No 37
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=1.7e-37 Score=322.51 Aligned_cols=238 Identities=63% Similarity=1.086 Sum_probs=220.1
Q ss_pred CChHHHHHhhhcCCeEEecccccccccCCCCCCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEE
Q psy17912 90 RSQGEVESYLNHHDVTVKGRYYLLRLESRPGKCVPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLV 169 (779)
Q Consensus 90 ~~~~e~~~~~~~~~i~~~g~~~~~~~~~~~~~~~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi 169 (779)
.+.++++.++....+.+.|.. .|+|+.+|.++++++.+.+.+.++||..|+|+|.++++.+++|+|++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~------------~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l 70 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHN------------CPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMV 70 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSC------------CCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEE
T ss_pred CCHHHHHHHHhcCceEEeCCC------------CCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 456788999999999999887 89999999999999999999999999999999999999999999999
Q ss_pred EEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhh
Q psy17912 170 AIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQ 249 (779)
Q Consensus 170 i~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~ 249 (779)
+++|||+|||++|++|++.++...+......++++||++||++|+.|+.+.++++....++.+..++|+.....+...+.
T Consensus 71 ~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 150 (242)
T 3fe2_A 71 GVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLE 150 (242)
T ss_dssp EEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred EECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhc
Confidence 99999999999999999999987655445568899999999999999999999999888999999999999888888888
Q ss_pred cCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhcc
Q psy17912 250 TGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLV 329 (779)
Q Consensus 250 ~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~ 329 (779)
.+++|+|+||++|.+++......+.++++|||||||++.+++|...+..++..++++.|+++||||+|+.++.++..++.
T Consensus 151 ~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~ 230 (242)
T 3fe2_A 151 RGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLK 230 (242)
T ss_dssp HCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCS
T ss_pred CCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEeecCHHHHHHHHHHCC
Confidence 88999999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEecCCC
Q psy17912 330 DYVQLNIGSL 339 (779)
Q Consensus 330 ~~~~i~i~~~ 339 (779)
+|+.+.++..
T Consensus 231 ~~~~i~~~~~ 240 (242)
T 3fe2_A 231 DYIHINIGAL 240 (242)
T ss_dssp SCEEEEECC-
T ss_pred CCEEEEecCC
Confidence 9999988654
No 38
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=7.7e-38 Score=399.15 Aligned_cols=333 Identities=18% Similarity=0.203 Sum_probs=242.9
Q ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEccCCCChhHHHHHHHHHHHhccCCC---CCCCCCEEEEEccC
Q psy17912 135 FPPYIMKKIYEMGFQAPTAIQAQGWPIAL-SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPL---RSGEGPIVLVLAPT 210 (779)
Q Consensus 135 l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~---~~~~~~~vLil~Pt 210 (779)
||+.....+ .||++|+++|++++|.++ +++|++++||||||||++|.++++..+...... ....+.++||++|+
T Consensus 66 Lp~~~~~~f--~g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~ 143 (1724)
T 4f92_B 66 LPKYAQAGF--EGFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPM 143 (1724)
T ss_dssp SCGGGSTTC--TTCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSS
T ss_pred cCHHHHHhc--CCCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCH
Confidence 454443333 279999999999999887 578999999999999999999999998764321 12346799999999
Q ss_pred HHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC--cCCCCeeEEEEccchhhh
Q psy17912 211 RELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT--INLHRTSYLVLDEADRML 288 (779)
Q Consensus 211 r~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~--~~l~~i~~lViDEaH~l~ 288 (779)
++||.|+++.+.+.....+++|..++|+....... ...++|+|||||++..++.+.. ..++.+++|||||+|.+.
T Consensus 144 kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~---~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~ 220 (1724)
T 4f92_B 144 RSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEE---ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH 220 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTT---GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG
T ss_pred HHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccc---cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC
Confidence 99999999999998888999999999998764321 2458999999999866654432 237889999999999876
Q ss_pred cCCchHHHHHHHh-------hcCCCCceEEeeccccHHHHHHHHHhccC-c---EEEecCCCCCCCccceEEEEEecccc
Q psy17912 289 DMGFEPQIRKIIG-------QIRPDRQVLMWSATWPKEVQKLAEDFLVD-Y---VQLNIGSLNPTANHNIVQIVDVCQEH 357 (779)
Q Consensus 289 ~~~f~~~l~~il~-------~l~~~~qilllSAT~~~~v~~l~~~~l~~-~---~~i~i~~~~~~~~~~i~~~~~~~~~~ 357 (779)
+ ..+..++.++. ..+++.|+|+||||+|+. ++++ .|+.. + ......... +-.+.+.+......
T Consensus 221 d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~-~dvA-~wL~~~~~~~~~~~~~~~R---PvpL~~~~~~~~~~ 294 (1724)
T 4f92_B 221 D-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNY-EDVA-TFLRVDPAKGLFYFDNSFR---PVPLEQTYVGITEK 294 (1724)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTH-HHHH-HHTTCCHHHHEEECCGGGC---SSCEEEECCEECCC
T ss_pred C-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCH-HHHH-HHhCCCCCCCeEEECCCCc---cCccEEEEeccCCc
Confidence 5 46655555443 346789999999999863 4444 44432 1 122111111 11233333222222
Q ss_pred chh---HHHHHHHHH-hcc-CCCCcEEEEecchhHHHHHHHHHHhC----------------------------------
Q psy17912 358 EKD---YKLQGLLSQ-IGS-ERTSKTIIFVETKRKADDITRSVRNK---------------------------------- 398 (779)
Q Consensus 358 ~k~---~~L~~ll~~-i~~-~~~~kvLVF~~s~~~ae~L~~~L~~~---------------------------------- 398 (779)
... ..+..++.. +.. ...+++||||+|++.|+.+++.|.+.
T Consensus 295 ~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 374 (1724)
T 4f92_B 295 KAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELK 374 (1724)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHH
T ss_pred chhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHH
Confidence 211 222222222 111 24678999999999999999888631
Q ss_pred ---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEE----cC------CCCCH
Q psy17912 399 ---GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQ----YK------ESQQK 465 (779)
Q Consensus 399 ---g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~----y~------~p~s~ 465 (779)
...++++||+|++++|..+++.|++|.++|||||+++++|||+|..+ +||. |+ .|.+.
T Consensus 375 ~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsTLa~GVNlPa~~---------vVI~~~~~~~~~~~~~~~ls~ 445 (1724)
T 4f92_B 375 DLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHT---------VIIKGTQVYSPEKGRWTELGA 445 (1724)
T ss_dssp HHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHHHHHHSCCCBSE---------EEEECCEEEETTTTEEEECCH
T ss_pred HHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcchhHhhCCCCCce---------EEEeCCEEecCcCCCcccCCH
Confidence 13489999999999999999999999999999999999999999887 6664 43 35689
Q ss_pred HHHHHHhccCCCCC--CeEEEEEc
Q psy17912 466 RDRVLNEFRIGRAS--ILVSHYNK 487 (779)
Q Consensus 466 ~~yiQR~GRaGR~g--~~~~~~~~ 487 (779)
.+|.||+|||||.| ..|.++..
T Consensus 446 ~~~~Qm~GRAGR~g~d~~G~~ii~ 469 (1724)
T 4f92_B 446 LDILQMLGRAGRPQYDTKGEGILI 469 (1724)
T ss_dssp HHHHHHHTTBSCTTTCSCEEEEEE
T ss_pred HHHHHhhhhccCCCCCCccEEEEE
Confidence 99999999999987 34544443
No 39
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=100.00 E-value=1.1e-37 Score=363.21 Aligned_cols=323 Identities=17% Similarity=0.188 Sum_probs=246.5
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 146 MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
+|+ .|+++|..+++.+++|+ |+.++||+|||++|.+|++..... ++.++||+||++||.|..+++..+.
T Consensus 108 lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l~ 176 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRVH 176 (922)
T ss_dssp HSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 788 99999999999999998 999999999999999999866543 4479999999999999999999999
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcC------CcCCCCeeEEEEccchhhh-cC-------
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQG------TINLHRTSYLVLDEADRML-DM------- 290 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~------~~~l~~i~~lViDEaH~l~-~~------- 290 (779)
..+++++.+++|+.+.. .+....+++|+|+||++| .++|..+ .+.++.+.++||||||+|+ +.
T Consensus 177 ~~lGLsv~~i~gg~~~~--~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLii 254 (922)
T 1nkt_A 177 RFLGLQVGVILATMTPD--ERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLII 254 (922)
T ss_dssp HHTTCCEEECCTTCCHH--HHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEE
T ss_pred hhcCCeEEEEeCCCCHH--HHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceee
Confidence 99999999999998743 334444689999999999 7888765 3567889999999999998 42
Q ss_pred --------CchHHHHHHHhhcC---------CCCceE-----------------EeeccccHH---HHHHH--HHhcc-C
Q psy17912 291 --------GFEPQIRKIIGQIR---------PDRQVL-----------------MWSATWPKE---VQKLA--EDFLV-D 330 (779)
Q Consensus 291 --------~f~~~l~~il~~l~---------~~~qil-----------------llSAT~~~~---v~~l~--~~~l~-~ 330 (779)
+|...+..++..++ +.+|++ ++|||.+.. +...+ ..++. +
T Consensus 255 Sg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d 334 (922)
T 1nkt_A 255 SGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRD 334 (922)
T ss_dssp EEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBT
T ss_pred cCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcc
Confidence 47788999999997 678888 899998753 32222 11221 1
Q ss_pred --c-----EEEecCCCC----------------------CCC-cc-----ceE---------------------------
Q psy17912 331 --Y-----VQLNIGSLN----------------------PTA-NH-----NIV--------------------------- 348 (779)
Q Consensus 331 --~-----~~i~i~~~~----------------------~~~-~~-----~i~--------------------------- 348 (779)
+ ..+.+.... ... .. .+.
T Consensus 335 ~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~ 414 (922)
T 1nkt_A 335 KDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHE 414 (922)
T ss_dssp TTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHH
T ss_pred cceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHH
Confidence 1 111111100 000 00 000
Q ss_pred --------------------EEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCC
Q psy17912 349 --------------------QIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGN 408 (779)
Q Consensus 349 --------------------~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~ 408 (779)
..+.+.....|...+...+.... ..+.++||||+|++.++.|++.|++.|+++..+||+
T Consensus 415 iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~-~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak 493 (922)
T 1nkt_A 415 IYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY-AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAK 493 (922)
T ss_dssp HHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSS
T ss_pred HhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 00122333445555655554432 246789999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccc------------------------------------------
Q psy17912 409 KSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNE------------------------------------------ 446 (779)
Q Consensus 409 ~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~------------------------------------------ 446 (779)
+.+.++..+.+.|+.| .|+|||++++||+|++...-
T Consensus 494 ~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 571 (922)
T 1nkt_A 494 YHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEA 571 (922)
T ss_dssp CHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhh
Confidence 9888888888888877 79999999999999986520
Q ss_pred ---cccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEE
Q psy17912 447 ---FRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYN 486 (779)
Q Consensus 447 ---~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~ 486 (779)
..++. .+||+|+.|.+...|.||+||+||.|..|...+
T Consensus 572 ~~V~~~GG--lhVI~te~pes~riy~qr~GRTGRqGdpG~s~f 612 (922)
T 1nkt_A 572 KEVIEAGG--LYVLGTERHESRRIDNQLRGRSGRQGDPGESRF 612 (922)
T ss_dssp HHHHHTTS--EEEEECSCCSSHHHHHHHHHTSSGGGCCEEEEE
T ss_pred hHHHhcCC--cEEEeccCCCCHHHHHHHhcccccCCCCeeEEE
Confidence 00111 499999999999999999999999998885443
No 40
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=3e-37 Score=367.29 Aligned_cols=317 Identities=19% Similarity=0.159 Sum_probs=238.0
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcC------CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCH
Q psy17912 138 YIMKKIYEMGFQAPTAIQAQGWPIALSG------CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTR 211 (779)
Q Consensus 138 ~l~~~l~~~g~~~p~~~Q~~~i~~il~g------~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr 211 (779)
.+.+.+..++| +||++|.++++.++++ +++++++|||||||++|++|++..+.. +++++|++||+
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPtr 427 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPTS 427 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSCH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcH
Confidence 34444567899 9999999999999865 599999999999999999999988764 56899999999
Q ss_pred HHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH---HHhhc-CCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhh
Q psy17912 212 ELAQQIETVANDFGSATATRVACVFGGAPKGPQV---KALQT-GAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRM 287 (779)
Q Consensus 212 ~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~---~~l~~-~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l 287 (779)
+||.|+++.+.++....++++..++|+....+.. ..+.. .++|+|+||+.|.+ .+.+.++++|||||+|++
T Consensus 428 ~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 428 ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchh
Confidence 9999999999999888899999999998765543 23333 48999999987644 456889999999999985
Q ss_pred hcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHH
Q psy17912 288 LDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLL 367 (779)
Q Consensus 288 ~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll 367 (779)
... ....+.......++++||||+++...... +..+.....+.... .....+... +. ...+...+...+
T Consensus 503 g~~-----qr~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~p-~~r~~i~~~--~~-~~~~~~~l~~~i 571 (780)
T 1gm5_A 503 GVK-----QREALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEMP-PGRKEVQTM--LV-PMDRVNEVYEFV 571 (780)
T ss_dssp ----------CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCCC-SSCCCCEEC--CC-CSSTHHHHHHHH
T ss_pred hHH-----HHHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeeccC-CCCcceEEE--Ee-ccchHHHHHHHH
Confidence 321 12223333457899999999866543332 22221111111111 111222211 12 223334444544
Q ss_pred HHhccCCCCcEEEEecch--------hHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q psy17912 368 SQIGSERTSKTIIFVETK--------RKADDITRSVRN---KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKS 436 (779)
Q Consensus 368 ~~i~~~~~~kvLVF~~s~--------~~ae~L~~~L~~---~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~ 436 (779)
.... ..+.+++|||++. ..++.+++.|.. .++.+..+||+|++++|+.+++.|++|+.+|||||++++
T Consensus 572 ~~~l-~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie 650 (780)
T 1gm5_A 572 RQEV-MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIE 650 (780)
T ss_dssp HHHT-TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCC
T ss_pred HHHH-hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence 4332 3468899999965 457888999988 478899999999999999999999999999999999999
Q ss_pred cccccCcccccccccceeEEEEcCCCC-CHHHHHHHhccCCCCCCeEEEEEcCh
Q psy17912 437 QQERDRVLNEFRIGRASILVSQYKESQ-QKRDRVLNEFRIGRASILVSHYNKSQ 489 (779)
Q Consensus 437 ~GIDip~v~~~~~~~~~~~VI~y~~p~-s~~~yiQR~GRaGR~g~~~~~~~~~~ 489 (779)
+|+|+|+++ +||+|+.|. +..+|+||+||+||.|..+.++....
T Consensus 651 ~GIDiP~v~---------~VIi~d~~r~~l~~l~Qr~GRaGR~g~~g~~ill~~ 695 (780)
T 1gm5_A 651 VGIDVPRAN---------VMVIENPERFGLAQLHQLRGRVGRGGQEAYCFLVVG 695 (780)
T ss_dssp SCSCCTTCC---------EEEBCSCSSSCTTHHHHHHHTSCCSSTTCEEECCCC
T ss_pred ccccCCCCC---------EEEEeCCCCCCHHHHHHHhcccCcCCCCCEEEEEEC
Confidence 999999998 999999996 78999999999999998888777654
No 41
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=7.5e-36 Score=370.93 Aligned_cols=319 Identities=19% Similarity=0.161 Sum_probs=252.4
Q ss_pred CCCHHHHHHHHH-cCCCCCCHHHHHHHHHHhc----CC--CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEE
Q psy17912 134 NFPPYIMKKIYE-MGFQAPTAIQAQGWPIALS----GC--DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLV 206 (779)
Q Consensus 134 ~l~~~l~~~l~~-~g~~~p~~~Q~~~i~~il~----g~--dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLi 206 (779)
+.++...+.+.. ++|. |||+|.++++.+++ ++ |+++++|||+|||++|+++++..+.. +++++|
T Consensus 587 ~~~~~~~~~~~~~f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~--------g~~vlv 657 (1151)
T 2eyq_A 587 KHDREQYQLFCDSFPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDN--------HKQVAV 657 (1151)
T ss_dssp CCCHHHHHHHHHTCCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTT--------TCEEEE
T ss_pred CCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHh--------CCeEEE
Confidence 445566666654 6665 69999999999986 65 99999999999999999998876543 568999
Q ss_pred EccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHH---Hhhc-CCeEEEeChHHHHHHHHcCCcCCCCeeEEEEc
Q psy17912 207 LAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVK---ALQT-GAEIVIATPGRLIDYLEQGTINLHRTSYLVLD 282 (779)
Q Consensus 207 l~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~---~l~~-~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViD 282 (779)
++||++||.|+++.+.+.....++++..+++.....+... .+.. .++|+|+||+.| ...+.+.++++||||
T Consensus 658 lvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll-----~~~~~~~~l~lvIiD 732 (1151)
T 2eyq_A 658 LVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL-----QSDVKFKDLGLLIVD 732 (1151)
T ss_dssp ECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH-----HSCCCCSSEEEEEEE
T ss_pred EechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH-----hCCccccccceEEEe
Confidence 9999999999999999888878889988888766544432 2333 489999999654 245678999999999
Q ss_pred cchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHH
Q psy17912 283 EADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYK 362 (779)
Q Consensus 283 EaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~ 362 (779)
|||+ |......++..++++.++++||||+++....+....+.++..+.... .....+...+.. ..+...
T Consensus 733 EaH~-----~g~~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~---~~r~~i~~~~~~---~~~~~i 801 (1151)
T 2eyq_A 733 EEHR-----FGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPP---ARRLAVKTFVRE---YDSMVV 801 (1151)
T ss_dssp SGGG-----SCHHHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCC---CBCBCEEEEEEE---CCHHHH
T ss_pred chHh-----cChHHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCC---CCccccEEEEec---CCHHHH
Confidence 9999 44556677777778899999999987776666655555544332221 122233333322 223334
Q ss_pred HHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccc
Q psy17912 363 LQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK--GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQER 440 (779)
Q Consensus 363 L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~--g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GID 440 (779)
...++..+. .+++++|||+++++++.+++.|++. ++.+..+||+|++.+|+++++.|++|+.+|||||+++++|||
T Consensus 802 ~~~il~~l~--~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiD 879 (1151)
T 2eyq_A 802 REAILREIL--RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGID 879 (1151)
T ss_dssp HHHHHHHHT--TTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSC
T ss_pred HHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeec
Confidence 445555543 4689999999999999999999987 789999999999999999999999999999999999999999
Q ss_pred cCcccccccccceeEEEEcCC-CCCHHHHHHHhccCCCCCCeEEEEEcC
Q psy17912 441 DRVLNEFRIGRASILVSQYKE-SQQKRDRVLNEFRIGRASILVSHYNKS 488 (779)
Q Consensus 441 ip~v~~~~~~~~~~~VI~y~~-p~s~~~yiQR~GRaGR~g~~~~~~~~~ 488 (779)
+|+++ +||.++. +.++.+|+||+||+||.|..+++|...
T Consensus 880 ip~v~---------~VIi~~~~~~~l~~l~Qr~GRvgR~g~~g~~~ll~ 919 (1151)
T 2eyq_A 880 IPTAN---------TIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLLT 919 (1151)
T ss_dssp CTTEE---------EEEETTTTSSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred ccCCc---------EEEEeCCCCCCHHHHHHHHhccCcCCCceEEEEEE
Confidence 99988 8888887 579999999999999999888777654
No 42
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=3.3e-37 Score=355.15 Aligned_cols=306 Identities=14% Similarity=0.078 Sum_probs=235.3
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
.+|+|+|.++++.+++++++++++|||+|||++|++++...+... ++++|||+|+++|+.|+.+.++++....
T Consensus 112 ~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp ECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC-------SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC-------CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 489999999999999999999999999999999999988877541 3489999999999999999999987766
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCc
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 308 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~q 308 (779)
+..+..++|+.....+ ....++|+|+||+.|... ....+.++++|||||||++.. ..+..++..+.+..+
T Consensus 185 ~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~~---~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~~~~~~ 254 (510)
T 2oca_A 185 HAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (510)
T ss_dssp GGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHGGGCTTCCE
T ss_pred ccceEEEecCCccccc---cccCCcEEEEeHHHHhhc---hhhhhhcCCEEEEECCcCCCc----ccHHHHHHhcccCcE
Confidence 7888889888776554 445689999999976532 334578899999999999775 567788888888899
Q ss_pred eEEeeccccHHHHHHHH-HhccCcEEEecCCCCC-----CCccceEEEEEecc---------------------ccchhH
Q psy17912 309 VLMWSATWPKEVQKLAE-DFLVDYVQLNIGSLNP-----TANHNIVQIVDVCQ---------------------EHEKDY 361 (779)
Q Consensus 309 illlSAT~~~~v~~l~~-~~l~~~~~i~i~~~~~-----~~~~~i~~~~~~~~---------------------~~~k~~ 361 (779)
+++||||++........ ..+..+....+..... .....+........ ...+..
T Consensus 255 ~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (510)
T 2oca_A 255 KFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNK 334 (510)
T ss_dssp EEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHH
T ss_pred EEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHH
Confidence 99999999765433211 1122333322222110 00011111111110 111223
Q ss_pred HHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe-cccccccc
Q psy17912 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQ-YNKSQQER 440 (779)
Q Consensus 362 ~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT-~v~~~GID 440 (779)
.+..++.........++||||+ .+.++.+++.|...+..+..+||++++.+|+++++.|++|+.+||||| +++++|+|
T Consensus 335 ~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 335 WIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccc
Confidence 3444555443434556677776 899999999999988899999999999999999999999999999999 99999999
Q ss_pred cCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCe
Q psy17912 441 DRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASIL 481 (779)
Q Consensus 441 ip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~ 481 (779)
+|.++ +||+++.|.++.+|+||+||+||.|..
T Consensus 414 ip~v~---------~vi~~~~~~s~~~~~Q~~GR~gR~g~~ 445 (510)
T 2oca_A 414 VKNLH---------HVVLAHGVKSKIIVLQTIGRVLRKHGS 445 (510)
T ss_dssp CCSEE---------EEEESSCCCSCCHHHHHHHHHHTTTCC
T ss_pred cccCc---------EEEEeCCCCCHHHHHHHHhcccccCCC
Confidence 99988 999999999999999999999998844
No 43
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=7.4e-36 Score=357.35 Aligned_cols=340 Identities=17% Similarity=0.156 Sum_probs=247.9
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCC
Q psy17912 124 PRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIAL-SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGP 202 (779)
Q Consensus 124 p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 202 (779)
+.|+..|.++++++.+.+.+...+ ..|++.|+++++.++ .+++++++||||||||+ ++|++...... ..+.++
T Consensus 68 ~~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~---~~~~g~ 141 (773)
T 2xau_A 68 DGKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEM---PHLENT 141 (773)
T ss_dssp HSSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHC---GGGGTC
T ss_pred cCCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhcc---ccCCCc
Confidence 346778999999999999999877 789999999998877 45689999999999997 56665332221 011256
Q ss_pred EEEEEccCHHHHHHHHHHHHHhc-ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEE
Q psy17912 203 IVLVLAPTRELAQQIETVANDFG-SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVL 281 (779)
Q Consensus 203 ~vLil~Ptr~La~Q~~~~~~~~~-~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lVi 281 (779)
+++|++|+++|+.|+.+.+.+.. ...+..+........ ......+|+++||+++++.+... ..+.++++|||
T Consensus 142 ~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIl 214 (773)
T 2xau_A 142 QVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIIL 214 (773)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEE
T ss_pred eEEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEe
Confidence 89999999999999987665432 223333332111110 11235789999999999887654 45899999999
Q ss_pred ccchh-hhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchh
Q psy17912 282 DEADR-MLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKD 360 (779)
Q Consensus 282 DEaH~-l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~ 360 (779)
||+|. .++.++...+.+.+....++.|+++||||++.+ .+ ..++.+...+.+.... ..+...+......+..
T Consensus 215 DEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~--~l-~~~~~~~~vi~v~gr~----~pv~~~~~~~~~~~~~ 287 (773)
T 2xau_A 215 DEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE--KF-QRYFNDAPLLAVPGRT----YPVELYYTPEFQRDYL 287 (773)
T ss_dssp CSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH--HH-HHHTTSCCEEECCCCC----CCEEEECCSSCCSCHH
T ss_pred cCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH--HH-HHHhcCCCcccccCcc----cceEEEEecCCchhHH
Confidence 99994 666443333333333445789999999999753 33 3455543334333222 2333333323333333
Q ss_pred HH-HHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHh-----------CCCeEEEEcCCCCHHHHHHHHHHHh-----c
Q psy17912 361 YK-LQGLLSQIGSERTSKTIIFVETKRKADDITRSVRN-----------KGWAAVAIHGNKSQQERDRVLNEFR-----I 423 (779)
Q Consensus 361 ~~-L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~-----------~g~~v~~ihg~~~~~eR~~il~~F~-----~ 423 (779)
.. +..++..+.....+++||||+++++++.+++.|.+ .++.+..+||+|++++|..+++.|+ +
T Consensus 288 ~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~ 367 (773)
T 2xau_A 288 DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR 367 (773)
T ss_dssp HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC
Confidence 22 33333333334678999999999999999999985 5788999999999999999999999 9
Q ss_pred CCCcEEEEecccccccccCcccccccccceeEEEEcCC------------------CCCHHHHHHHhccCCCCCCeEEEE
Q psy17912 424 GRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKE------------------SQQKRDRVLNEFRIGRASILVSHY 485 (779)
Q Consensus 424 G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~------------------p~s~~~yiQR~GRaGR~g~~~~~~ 485 (779)
|+.+|||||+++++|||+|+++ +||+++. |.+..+|+||+|||||. ..|.+|
T Consensus 368 g~~kVlVAT~iae~GidIp~v~---------~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~-~~G~~~ 437 (773)
T 2xau_A 368 PGRKVVISTNIAETSLTIDGIV---------YVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT-RPGKCF 437 (773)
T ss_dssp CCEEEEEECTHHHHTCCCTTEE---------EEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS-SSEEEE
T ss_pred CceEEEEeCcHHHhCcCcCCeE---------EEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC-CCCEEE
Confidence 9999999999999999999988 9999887 89999999999999999 677777
Q ss_pred EcChHHHH
Q psy17912 486 NKSQQERD 493 (779)
Q Consensus 486 ~~~~~e~~ 493 (779)
....++.+
T Consensus 438 ~l~~~~~~ 445 (773)
T 2xau_A 438 RLYTEEAF 445 (773)
T ss_dssp ESSCHHHH
T ss_pred EEecHHHh
Confidence 77666544
No 44
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=6.1e-37 Score=347.19 Aligned_cols=284 Identities=15% Similarity=0.083 Sum_probs=209.1
Q ss_pred CCCCCCHHHHHHHHHHhcCCCE-EEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 147 GFQAPTAIQAQGWPIALSGCDL-VAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 147 g~~~p~~~Q~~~i~~il~g~dv-ii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
|+.+|+|+|+ ++|.+++++++ ++++|||||||++|++|++..+.. .++++||++||++||.|+.+.+..
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g-- 70 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALRG-- 70 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTT--
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhcC--
Confidence 6788999985 79999998887 999999999999999999987765 256899999999999999988752
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHh-hcC
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIG-QIR 304 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~-~l~ 304 (779)
+.+......... ....+..|.++|++.+.+.+... ..+.++++|||||||++ +..+...+..+.. ...
T Consensus 71 ----~~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~ 139 (451)
T 2jlq_A 71 ----LPIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEM 139 (451)
T ss_dssp ----SCEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHT
T ss_pred ----ceeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcC
Confidence 233221111111 11234579999999998888654 56889999999999976 3333333333322 235
Q ss_pred CCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecc
Q psy17912 305 PDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVET 384 (779)
Q Consensus 305 ~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s 384 (779)
++.|+++||||+|..+..+ +..++..+...... +. .....+...+.. ..+++||||++
T Consensus 140 ~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~~--------------p~-~~~~~~~~~l~~----~~~~~lVF~~s 197 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPF---PQSNSPIEDIEREI--------------PE-RSWNTGFDWITD----YQGKTVWFVPS 197 (451)
T ss_dssp TSCEEEEECSSCTTCCCSS---CCCSSCEEEEECCC--------------CS-SCCSSSCHHHHH----CCSCEEEECSS
T ss_pred CCceEEEEccCCCccchhh---hcCCCceEecCccC--------------Cc-hhhHHHHHHHHh----CCCCEEEEcCC
Confidence 6899999999998743221 11222222111100 00 000111222222 35689999999
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcC----
Q psy17912 385 KRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYK---- 460 (779)
Q Consensus 385 ~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~---- 460 (779)
++.|+.+++.|++.++.+..+|+++. .++++.|++|+.+|||||+++++|||+|. + +||+|+
T Consensus 198 ~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~---------~VI~~~~~~~ 263 (451)
T 2jlq_A 198 IKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-G---------RVIDPRRCLK 263 (451)
T ss_dssp HHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-S---------EEEECCEEEE
T ss_pred HHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-C---------EEEECCCccc
Confidence 99999999999999999999999764 57999999999999999999999999998 8 899988
Q ss_pred ----------------CCCCHHHHHHHhccCCCCCC-eEEEEEc
Q psy17912 461 ----------------ESQQKRDRVLNEFRIGRASI-LVSHYNK 487 (779)
Q Consensus 461 ----------------~p~s~~~yiQR~GRaGR~g~-~~~~~~~ 487 (779)
.|.+..+|+||+||+||.|. .+.++..
T Consensus 264 ~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~ 307 (451)
T 2jlq_A 264 PVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVF 307 (451)
T ss_dssp EEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred ccccccccceeeecccccCCHHHHHHhccccCCCCCCCccEEEE
Confidence 99999999999999999996 5544443
No 45
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=5.5e-37 Score=358.55 Aligned_cols=307 Identities=15% Similarity=0.085 Sum_probs=219.8
Q ss_pred CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHH
Q psy17912 133 CNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRE 212 (779)
Q Consensus 133 ~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~ 212 (779)
+++++.+.+.+... ...++|+|+.+++.+++++|+++++|||||||++|++|++..+.. .++++||++||++
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 34555555544422 478899988899999999999999999999999999999988765 2568999999999
Q ss_pred HHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCc
Q psy17912 213 LAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGF 292 (779)
Q Consensus 213 La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f 292 (779)
||.|+.+.+.. ..+. ..+.... .....+..+.++|.+.+...+... ..+.++++|||||||++ +.+|
T Consensus 227 La~Qi~~~l~~------~~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~~~ 293 (618)
T 2whx_A 227 VAAEMEEALRG------LPIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DPCS 293 (618)
T ss_dssp HHHHHHHHTTT------SCEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SHHH
T ss_pred HHHHHHHHhcC------Ccee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-CccH
Confidence 99999987763 2232 2221100 011123467888999888776554 45889999999999997 6667
Q ss_pred hHHHHHHHhhcC-CCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhc
Q psy17912 293 EPQIRKIIGQIR-PDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIG 371 (779)
Q Consensus 293 ~~~l~~il~~l~-~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~ 371 (779)
...+..++..++ ++.|+++||||++..+..++. .++..+.+... .+. .+...+...+..
T Consensus 294 ~~~~~~i~~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~--------------~~~-~~~~~ll~~l~~-- 353 (618)
T 2whx_A 294 VAARGYISTRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIERE--------------IPE-RSWNTGFDWITD-- 353 (618)
T ss_dssp HHHHHHHHHHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECC--------------CCS-SCCSSSCHHHHH--
T ss_pred HHHHHHHHHHhcccCccEEEEECCCchhhhhhhc---cCCceeeeccc--------------CCH-HHHHHHHHHHHh--
Confidence 777888877764 789999999999876432211 11111111110 011 111112222222
Q ss_pred cCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccc-ccccc
Q psy17912 372 SERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLN-EFRIG 450 (779)
Q Consensus 372 ~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~-~~~~~ 450 (779)
..+++||||++++.|+.+++.|+..++.+..+||+ +|.++++.|++|+.+|||||+++++|||+| ++ +.+.+
T Consensus 354 --~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g 426 (618)
T 2whx_A 354 --YQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPR 426 (618)
T ss_dssp --CCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECC
T ss_pred --CCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECc
Confidence 36789999999999999999999999999999984 788899999999999999999999999998 65 11111
Q ss_pred c----------ceeEEEEcCCCCCHHHHHHHhccCCCCCC-eEEEEEc
Q psy17912 451 R----------ASILVSQYKESQQKRDRVLNEFRIGRASI-LVSHYNK 487 (779)
Q Consensus 451 ~----------~~~~VI~y~~p~s~~~yiQR~GRaGR~g~-~~~~~~~ 487 (779)
. ...++++|+.|.+.++|+||+||+||.|. .+.++..
T Consensus 427 ~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l 474 (618)
T 2whx_A 427 RCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVF 474 (618)
T ss_dssp EEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred ceecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEE
Confidence 1 01255899999999999999999999974 5544444
No 46
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=3.3e-34 Score=294.75 Aligned_cols=219 Identities=43% Similarity=0.786 Sum_probs=190.5
Q ss_pred CCCCCCCCCCCCCCcC-CCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCC
Q psy17912 117 SRPGKCVPRPIQHFEE-CNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRP 195 (779)
Q Consensus 117 ~~~~~~~p~pi~~f~~-~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~ 195 (779)
.......|+|+.+|.+ +++++.+++.+.++||.+|+|+|.++++.+++++|+++++|||+|||++|++|++..+.....
T Consensus 8 ~~~~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~ 87 (228)
T 3iuy_A 8 SGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPI 87 (228)
T ss_dssp SSSCCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC----
T ss_pred CCccCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccc
Confidence 3455668999999999 799999999999999999999999999999999999999999999999999999988765321
Q ss_pred C-CCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCC
Q psy17912 196 L-RSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLH 274 (779)
Q Consensus 196 ~-~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~ 274 (779)
. ....++++||++||++|+.|+.+.++++. ..++.+..++|+.....+...+..+++|+|+||++|.+++......+.
T Consensus 88 ~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~ 166 (228)
T 3iuy_A 88 SREQRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLR 166 (228)
T ss_dssp -----CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCT
T ss_pred hhhccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcc
Confidence 1 12357789999999999999999999986 457889999999988888888888899999999999999988888899
Q ss_pred CeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEec
Q psy17912 275 RTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNI 336 (779)
Q Consensus 275 ~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i 336 (779)
++++|||||||++.+++|...+..++..++++.|+++||||+|+.+++++..++.+|+.+.+
T Consensus 167 ~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i~v 228 (228)
T 3iuy_A 167 SITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228 (228)
T ss_dssp TCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEC
T ss_pred cceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCCEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999887653
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=4.4e-35 Score=334.13 Aligned_cols=283 Identities=23% Similarity=0.173 Sum_probs=213.8
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
..|+|+|.++++.+++++++++++|||+|||++|+.++... +.++|||+|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 37999999999999999999999999999999999988754 346999999999999999998885
Q ss_pred Cce-EEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCC
Q psy17912 229 ATR-VACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDR 307 (779)
Q Consensus 229 ~l~-v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~ 307 (779)
++. +..++|+... ..+|+|+||+.+...+.. ...++++|||||||++.+..|.. ++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~~~~~----~~~~~-~~~ 219 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESYVQ----IAQMS-IAP 219 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTSTTTHH----HHHTC-CCS
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCChHHHH----HHHhc-CCC
Confidence 677 7777776543 368999999998876642 12458999999999998876653 44444 567
Q ss_pred ceEEeeccccH-------------------HHHHHHHHhccCcEEEecCCCCC-------------------------CC
Q psy17912 308 QVLMWSATWPK-------------------EVQKLAEDFLVDYVQLNIGSLNP-------------------------TA 343 (779)
Q Consensus 308 qilllSAT~~~-------------------~v~~l~~~~l~~~~~i~i~~~~~-------------------------~~ 343 (779)
+++++|||++. ....+...++..+....+..... ..
T Consensus 220 ~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 299 (472)
T 2fwr_A 220 FRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRR 299 (472)
T ss_dssp EEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTC
T ss_pred eEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 89999999862 12222222222221111100000 00
Q ss_pred ccceEEEE---------------------EeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeE
Q psy17912 344 NHNIVQIV---------------------DVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAA 402 (779)
Q Consensus 344 ~~~i~~~~---------------------~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v 402 (779)
...+...+ ..+....|...+.+++.. ..+.++||||++++.++.+++.|. +
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~---~~~~k~lvF~~~~~~~~~l~~~l~-----~ 371 (472)
T 2fwr_A 300 AEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILER---HRKDKIIIFTRHNELVYRISKVFL-----I 371 (472)
T ss_dssp CSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHH---TSSSCBCCBCSCHHHHHHHHHHTT-----C
T ss_pred hhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHh---CCCCcEEEEECCHHHHHHHHHHhC-----c
Confidence 00000000 001122344555555554 457899999999999999999984 5
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCC
Q psy17912 403 VAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASI 480 (779)
Q Consensus 403 ~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~ 480 (779)
..+||+++..+|+++++.|++|+.+|||||+++++|+|+|.++ +||+|+.|.++..|+||+||+||.|.
T Consensus 372 ~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~---------~Vi~~~~~~s~~~~~Q~~GR~~R~g~ 440 (472)
T 2fwr_A 372 PAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDAN---------VGVIMSGSGSAREYIQRLGRILRPSK 440 (472)
T ss_dssp CBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBS---------EEEEECCSSCCHHHHHHHHHSBCCCT
T ss_pred ceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCc---------EEEEECCCCCHHHHHHHHhhccCCCC
Confidence 6799999999999999999999999999999999999999999 99999999999999999999999983
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=100.00 E-value=2.1e-36 Score=341.42 Aligned_cols=271 Identities=14% Similarity=0.130 Sum_probs=180.9
Q ss_pred HHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCC
Q psy17912 161 IALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAP 240 (779)
Q Consensus 161 ~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~ 240 (779)
.+++|+|+++++|||||||++|++|++..+... +++++|++||++||.|+++.++.+ + +....+...
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~-------~~~~lil~Ptr~La~Q~~~~l~~~----~--v~~~~~~~~ 70 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGL----D--VKFHTQAFS 70 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT-------TCCEEEEESSHHHHHHHHHHTTTS----C--EEEESSCCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc-------CCeEEEEcchHHHHHHHHHHHhcC----C--eEEecccce
Confidence 456899999999999999999999999877652 568999999999999999888754 2 221111100
Q ss_pred ChhhHHHhhcCCeEEEeChHHHH---------HHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhc-CCCCceE
Q psy17912 241 KGPQVKALQTGAEIVIATPGRLI---------DYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQI-RPDRQVL 310 (779)
Q Consensus 241 ~~~~~~~l~~~~~IiV~Tpe~Ll---------~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l-~~~~qil 310 (779)
.++||++++ ..+ .....+.++++|||||||++ +.++...+..+.... +++.|++
T Consensus 71 --------------~v~Tp~~l~~~l~~~~l~~~~-~~~~~~~~l~~vViDEah~~-~~~~~~~~~~~~~~~~~~~~~~l 134 (440)
T 1yks_A 71 --------------AHGSGREVIDAMCHATLTYRM-LEPTRVVNWEVIIMDEAHFL-DPASIAARGWAAHRARANESATI 134 (440)
T ss_dssp --------------CCCCSSCCEEEEEHHHHHHHH-TSSSCCCCCSEEEETTTTCC-SHHHHHHHHHHHHHHHTTSCEEE
T ss_pred --------------eccCCccceeeecccchhHhh-hCcccccCccEEEEECcccc-CcchHHHHHHHHHHhccCCceEE
Confidence 244554433 222 23345889999999999997 333333333333333 3679999
Q ss_pred EeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHH
Q psy17912 311 MWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADD 390 (779)
Q Consensus 311 llSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~ 390 (779)
+||||+++.+..+... ...+...............+. .+.. .++++||||++++.++.
T Consensus 135 ~~SAT~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~-~l~~----~~~~~lVF~~s~~~a~~ 192 (440)
T 1yks_A 135 LMTATPPGTSDEFPHS-----------------NGEIEDVQTDIPSEPWNTGHD-WILA----DKRPTAWFLPSIRAANV 192 (440)
T ss_dssp EECSSCTTCCCSSCCC-----------------SSCEEEEECCCCSSCCSSSCH-HHHH----CCSCEEEECSCHHHHHH
T ss_pred EEeCCCCchhhhhhhc-----------------CCCeeEeeeccChHHHHHHHH-HHHh----cCCCEEEEeCCHHHHHH
Confidence 9999998754322111 001111111111111222222 2222 36799999999999999
Q ss_pred HHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccc-cc---------cceeEEEEcC
Q psy17912 391 ITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFR-IG---------RASILVSQYK 460 (779)
Q Consensus 391 L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~-~~---------~~~~~VI~y~ 460 (779)
+++.|+..++.+..+|| ++|.++++.|++|+.+|||||+++++|||+| ++... .+ ....++++|+
T Consensus 193 l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~ 267 (440)
T 1yks_A 193 MAASLRKAGKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGP 267 (440)
T ss_dssp HHHHHHHTTCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHcCCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccc
Confidence 99999999999999999 4689999999999999999999999999999 87100 00 0002445699
Q ss_pred CCCCHHHHHHHhccCCCC-CCeEEEEEc
Q psy17912 461 ESQQKRDRVLNEFRIGRA-SILVSHYNK 487 (779)
Q Consensus 461 ~p~s~~~yiQR~GRaGR~-g~~~~~~~~ 487 (779)
.|.+..+|+||+||+||. +..+.++..
T Consensus 268 ~p~~~~~~~Qr~GR~GR~g~~~g~~~~l 295 (440)
T 1yks_A 268 LRISASSAAQRRGRIGRNPNRDGDSYYY 295 (440)
T ss_dssp EECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred cccCHHHHHHhccccCCCCCCCceEEEE
Confidence 999999999999999998 566665554
No 49
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=100.00 E-value=2.9e-35 Score=346.21 Aligned_cols=289 Identities=16% Similarity=0.179 Sum_probs=204.1
Q ss_pred HHHcCCC-----CCCHHHH-----HHHHHHh------cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEE
Q psy17912 143 IYEMGFQ-----APTAIQA-----QGWPIAL------SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLV 206 (779)
Q Consensus 143 l~~~g~~-----~p~~~Q~-----~~i~~il------~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLi 206 (779)
+...||. .|+++|+ +++|.++ +++|+++++|||||||++|++|++..+.. .++++||
T Consensus 203 l~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~li 275 (673)
T 2wv9_A 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAV 275 (673)
T ss_dssp EEEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEE
T ss_pred eeeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEE
Confidence 3345666 8999999 9999888 89999999999999999999999988765 2568999
Q ss_pred EccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchh
Q psy17912 207 LAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADR 286 (779)
Q Consensus 207 l~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~ 286 (779)
++||++||.|+++.++.+. +. ...+.... ....+.-+-+.+.+.+...+... ..++++++|||||||+
T Consensus 276 laPTr~La~Q~~~~l~~~~----i~--~~~~~l~~-----v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~ 343 (673)
T 2wv9_A 276 LAPTRVVAAEMAEALRGLP----VR--YLTPAVQR-----EHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHF 343 (673)
T ss_dssp EESSHHHHHHHHHHTTTSC----CE--ECCC---C-----CCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTC
T ss_pred EccHHHHHHHHHHHHhcCC----ee--eecccccc-----cCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCcc
Confidence 9999999999998887552 21 11110000 00111234556666666655443 5688999999999999
Q ss_pred hhcCCchHHHHHHHhhc-CCCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHH
Q psy17912 287 MLDMGFEPQIRKIIGQI-RPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQG 365 (779)
Q Consensus 287 l~~~~f~~~l~~il~~l-~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 365 (779)
+ +..+...+..+...+ +++.|+++||||+++.+..+... ...+...............+ .
T Consensus 344 ~-~~~~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~-----------------~~~i~~v~~~~~~~~~~~~l-~ 404 (673)
T 2wv9_A 344 T-DPASIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT-----------------NSPVHDVSSEIPDRAWSSGF-E 404 (673)
T ss_dssp C-CHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC-----------------SSCEEEEECCCCSSCCSSCC-H
T ss_pred c-CccHHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc-----------------CCceEEEeeecCHHHHHHHH-H
Confidence 7 221222333333333 26789999999998653221110 11111111111111111112 2
Q ss_pred HHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccc
Q psy17912 366 LLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLN 445 (779)
Q Consensus 366 ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~ 445 (779)
.+. . ..+++||||+++++++.+++.|+..++.+..+||+ +|.++++.|++|+.+|||||+++++|||+| ++
T Consensus 405 ~l~---~-~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~ 475 (673)
T 2wv9_A 405 WIT---D-YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFG-AS 475 (673)
T ss_dssp HHH---S-CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CS
T ss_pred HHH---h-CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCCceEEEECchhhcceeeC-Cc
Confidence 222 2 47899999999999999999999999999999993 899999999999999999999999999999 77
Q ss_pred ccccccceeEEEE--------------------cCCCCCHHHHHHHhccCCCC-CCeEEEEEc
Q psy17912 446 EFRIGRASILVSQ--------------------YKESQQKRDRVLNEFRIGRA-SILVSHYNK 487 (779)
Q Consensus 446 ~~~~~~~~~~VI~--------------------y~~p~s~~~yiQR~GRaGR~-g~~~~~~~~ 487 (779)
+||+ |+.|.+..+|+||+||+||. |..+.+|..
T Consensus 476 ---------~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 476 ---------RVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp ---------EEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred ---------EEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 5555 77999999999999999999 666655554
No 50
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=1.2e-33 Score=295.31 Aligned_cols=218 Identities=45% Similarity=0.727 Sum_probs=194.3
Q ss_pred CCC--CCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCC----
Q psy17912 123 VPR--PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPL---- 196 (779)
Q Consensus 123 ~p~--pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~---- 196 (779)
.|. |+.+|+++++++.+.+.+.++||..|+|+|.++++.+++++|+++++|||+|||++|++|++.++......
T Consensus 16 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~ 95 (253)
T 1wrb_A 16 YSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRY 95 (253)
T ss_dssp SSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC-----
T ss_pred CCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccc
Confidence 454 88999999999999999999999999999999999999999999999999999999999999988754311
Q ss_pred CCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCe
Q psy17912 197 RSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRT 276 (779)
Q Consensus 197 ~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i 276 (779)
....++++||++||++|+.|+.+.+++++...++.+..++|+.....+...+..+++|+|+||++|.+.+......+.++
T Consensus 96 ~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 175 (253)
T 1wrb_A 96 SKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFC 175 (253)
T ss_dssp -CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTC
T ss_pred cccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhC
Confidence 12345789999999999999999999998888899999999999888888888889999999999999998888889999
Q ss_pred eEEEEccchhhhcCCchHHHHHHHhhc--CC--CCceEEeeccccHHHHHHHHHhccCcEEEecCCCC
Q psy17912 277 SYLVLDEADRMLDMGFEPQIRKIIGQI--RP--DRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLN 340 (779)
Q Consensus 277 ~~lViDEaH~l~~~~f~~~l~~il~~l--~~--~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~ 340 (779)
++|||||||++.+++|...+..++..+ +. +.|+++||||++++++.++..++.+|+.+.++...
T Consensus 176 ~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~ 243 (253)
T 1wrb_A 176 KYIVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVGRVG 243 (253)
T ss_dssp CEEEEETHHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEEC---
T ss_pred CEEEEeCHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEECCCC
Confidence 999999999999999999999999853 33 68999999999999999999999999998887654
No 51
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=100.00 E-value=8.6e-34 Score=319.36 Aligned_cols=271 Identities=13% Similarity=0.090 Sum_probs=191.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGP 243 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~ 243 (779)
+|+++++++|||||||++|++|++..+.. .+++++|++||++||.|+.+.+. ++.+....+....
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 47899999999999999999999976654 25689999999999999887765 3445444443211
Q ss_pred hHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhh-cCCCCceEEeeccccHHHHH
Q psy17912 244 QVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQ-IRPDRQVLMWSATWPKEVQK 322 (779)
Q Consensus 244 ~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~-l~~~~qilllSAT~~~~v~~ 322 (779)
....+.-+.++|.+.+...+.. ...+.++++|||||||++ +..+......+... .+++.|+++||||+++.+..
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~ 140 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DPASVAARGYIETRVSMGDAGAIFMTATPPGTTEA 140 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCS
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-CccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhh
Confidence 1112346778899988877766 556899999999999996 33233333333333 25689999999999863211
Q ss_pred HHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeE
Q psy17912 323 LAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAA 402 (779)
Q Consensus 323 l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v 402 (779)
+. . . ...+.......+. .+...+..++.. ..+++||||+++++++.+++.|++.++.+
T Consensus 141 ~~----~------------~-~~~i~~~~~~~~~-~~~~~~~~~l~~----~~~~~lVF~~~~~~~~~l~~~L~~~~~~v 198 (431)
T 2v6i_A 141 FP----P------------S-NSPIIDEETRIPD-KAWNSGYEWITE----FDGRTVWFVHSIKQGAEIGTCLQKAGKKV 198 (431)
T ss_dssp SC----C------------C-SSCCEEEECCCCS-SCCSSCCHHHHS----CSSCEEEECSSHHHHHHHHHHHHHTTCCE
T ss_pred hc----C------------C-CCceeeccccCCH-HHHHHHHHHHHc----CCCCEEEEeCCHHHHHHHHHHHHHcCCeE
Confidence 10 0 0 0111111011111 111222233332 36789999999999999999999999999
Q ss_pred EEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccce-------eEEEEcCCCCCHHHHHHHhccC
Q psy17912 403 VAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRAS-------ILVSQYKESQQKRDRVLNEFRI 475 (779)
Q Consensus 403 ~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~-------~~VI~y~~p~s~~~yiQR~GRa 475 (779)
..+||+ +|.++++.|++|+.+|||||+++++|+|+|...+...+... .+||+++.|.+..+|+||+||+
T Consensus 199 ~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~ 274 (431)
T 2v6i_A 199 LYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRI 274 (431)
T ss_dssp EEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTS
T ss_pred EEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccCCcEEEecCccccceecccceeecccccCCHHHHHHhhhcc
Confidence 999997 68899999999999999999999999999943321111111 2589999999999999999999
Q ss_pred CCCCC
Q psy17912 476 GRASI 480 (779)
Q Consensus 476 GR~g~ 480 (779)
||.|.
T Consensus 275 GR~g~ 279 (431)
T 2v6i_A 275 GRNPE 279 (431)
T ss_dssp SCCTT
T ss_pred CCCCC
Confidence 99983
No 52
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=2.2e-33 Score=290.57 Aligned_cols=212 Identities=32% Similarity=0.525 Sum_probs=180.6
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCC
Q psy17912 121 KCVPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGE 200 (779)
Q Consensus 121 ~~~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~ 200 (779)
...|.++.+|+++++++.+.+.+.++||..|+|+|.++++.+++++|+++++|||+|||++|++|++..+... ..
T Consensus 23 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~~ 97 (237)
T 3bor_A 23 SNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----FK 97 (237)
T ss_dssp ----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----SC
T ss_pred CCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CC
Confidence 3467788999999999999999999999999999999999999999999999999999999999999876532 23
Q ss_pred CCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcC-CeEEEeChHHHHHHHHcCCcCCCCeeEE
Q psy17912 201 GPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTG-AEIVIATPGRLIDYLEQGTINLHRTSYL 279 (779)
Q Consensus 201 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~-~~IiV~Tpe~Ll~~l~~~~~~l~~i~~l 279 (779)
++++||++||++|+.|+.+.+++++...++.+..++|+.....+...+..+ ++|+|+||++|.+.+..+...+..+++|
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~l 177 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMF 177 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEE
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEE
Confidence 568999999999999999999999988889999999988877666666555 8999999999999998877888999999
Q ss_pred EEccchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecC
Q psy17912 280 VLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIG 337 (779)
Q Consensus 280 ViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~ 337 (779)
||||||++.+++|...+..++..+++..|++++|||+|+.+.+++..++.+|+.+.+.
T Consensus 178 ViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i~v~ 235 (237)
T 3bor_A 178 VLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVK 235 (237)
T ss_dssp EEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEEC--
T ss_pred EECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999999999999999999999999999999999999887654
No 53
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=6e-35 Score=338.83 Aligned_cols=275 Identities=18% Similarity=0.145 Sum_probs=204.7
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 229 (779)
.+.++|+++++.+.++++++++||||||||++|.+|++. ++.++||++||++||.|+.+.+.+.. +
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-----------~g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-----------QGYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------CCCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 345666677777778899999999999999999998875 14479999999999999988765543 4
Q ss_pred ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCc-
Q psy17912 230 TRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ- 308 (779)
Q Consensus 230 l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~q- 308 (779)
..+...+|+.. ...+++|+|+||++| +....+.++++++|||||||+ ++.+|...+..+++.++...+
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~~~~~~l~~Il~~l~~~~~~ 351 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDSTTILGIGTVLDQAETAGAR 351 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSHHHHHHHHHHHHHTTTTTCS
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCccHHHHHHHHHHhhhhcCCc
Confidence 55666677653 345689999999997 345667788999999999965 566688888889888877666
Q ss_pred -eEEeeccccHHHHHHHHHhccCcE--EEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecch
Q psy17912 309 -VLMWSATWPKEVQKLAEDFLVDYV--QLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETK 385 (779)
Q Consensus 309 -illlSAT~~~~v~~l~~~~l~~~~--~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~ 385 (779)
+++||||++..+. ...+. .+.... ...+ ........ +.....+++||||+++
T Consensus 352 llil~SAT~~~~i~------~~~p~i~~v~~~~-----~~~i----~~~~~~~~----------l~~~~~~~vLVFv~Tr 406 (666)
T 3o8b_A 352 LVVLATATPPGSVT------VPHPNIEEVALSN-----TGEI----PFYGKAIP----------IEAIRGGRHLIFCHSK 406 (666)
T ss_dssp EEEEEESSCTTCCC------CCCTTEEEEECBS-----CSSE----EETTEEEC----------GGGSSSSEEEEECSCH
T ss_pred eEEEECCCCCcccc------cCCcceEEEeecc-----cchh----HHHHhhhh----------hhhccCCcEEEEeCCH
Confidence 6778999987311 01110 011100 0000 00100000 1122578999999999
Q ss_pred hHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccc-ccccccceeEEEEcC----
Q psy17912 386 RKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLN-EFRIGRASILVSQYK---- 460 (779)
Q Consensus 386 ~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~-~~~~~~~~~~VI~y~---- 460 (779)
+.++.+++.|++.++.+..+||++++++ |+++..+|||||+++++|||++ ++ +.+.+.....|+|||
T Consensus 407 ~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~ 478 (666)
T 3o8b_A 407 KKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPT 478 (666)
T ss_dssp HHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSS
T ss_pred HHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCcccccccccccccc
Confidence 9999999999999999999999999875 5567779999999999999987 66 222333333466888
Q ss_pred -------CCCCHHHHHHHhccCCCCCCeEE
Q psy17912 461 -------ESQQKRDRVLNEFRIGRASILVS 483 (779)
Q Consensus 461 -------~p~s~~~yiQR~GRaGR~g~~~~ 483 (779)
.|.+.++|+||+||+|| |..|.
T Consensus 479 ~gl~~~~~P~s~~syiQRiGRtGR-g~~G~ 507 (666)
T 3o8b_A 479 FTIETTTVPQDAVSRSQRRGRTGR-GRRGI 507 (666)
T ss_dssp CEEEEEEEECBHHHHHHHHTTBCS-SSCEE
T ss_pred cccccccCcCCHHHHHHHhccCCC-CCCCE
Confidence 89999999999999999 77776
No 54
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=4.6e-33 Score=290.49 Aligned_cols=209 Identities=38% Similarity=0.570 Sum_probs=192.0
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCE
Q psy17912 124 PRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPI 203 (779)
Q Consensus 124 p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 203 (779)
+.+..+|+++++++.+.+.+.++||..|+++|.++++.+++++++++++|||+|||++|++|++..+...+ .+++
T Consensus 39 ~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~ 113 (249)
T 3ber_A 39 EEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLF 113 (249)
T ss_dssp HHHHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSC
T ss_pred ccccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCce
Confidence 34567899999999999999999999999999999999999999999999999999999999999887642 3568
Q ss_pred EEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHc-CCcCCCCeeEEEEc
Q psy17912 204 VLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQ-GTINLHRTSYLVLD 282 (779)
Q Consensus 204 vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~-~~~~l~~i~~lViD 282 (779)
+||++||++|+.|+.+.+++++...++++..++|+.....+...+..+++|+|+||++|.+.+.. ....+.++++||||
T Consensus 114 ~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViD 193 (249)
T 3ber_A 114 ALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMD 193 (249)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEc
Confidence 99999999999999999999988889999999999888777777778899999999999999876 45678899999999
Q ss_pred cchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecC
Q psy17912 283 EADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIG 337 (779)
Q Consensus 283 EaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~ 337 (779)
|||++.+++|...+..++..++++.|+++||||+++.++++++.++.+|+.+.++
T Consensus 194 Eah~l~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~v~ 248 (249)
T 3ber_A 194 EADRILNMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVS 248 (249)
T ss_dssp SHHHHHHTTCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEECC
T ss_pred ChhhhhccChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEEec
Confidence 9999999999999999999998899999999999999999999999999887653
No 55
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=100.00 E-value=5e-34 Score=323.88 Aligned_cols=268 Identities=15% Similarity=0.125 Sum_probs=190.0
Q ss_pred HHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCC
Q psy17912 159 WPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGG 238 (779)
Q Consensus 159 i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg 238 (779)
...+.+++++++++|||||||++|++|++..+.. .++++||++||++||.|+.+.+.. +.+....+.
T Consensus 15 ~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g------~~v~~~~~~ 81 (459)
T 2z83_A 15 PNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALRG------LPVRYQTSA 81 (459)
T ss_dssp CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTTT------SCEEECC--
T ss_pred HHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhcC------ceEeEEecc
Confidence 4456678999999999999999999999988765 256899999999999999988762 222221111
Q ss_pred CCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchh-----hhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 239 APKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADR-----MLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 239 ~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~-----l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
... ....+..+.++|.+.+...+... ..+.++++|||||||+ ++..+|...+. ..++.|+++||
T Consensus 82 ~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~-----~~~~~~~il~S 150 (459)
T 2z83_A 82 VQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAARGYIATKV-----ELGEAAAIFMT 150 (459)
T ss_dssp -----------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHH-----HTTSCEEEEEC
T ss_pred ccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHHHHHHHHh-----ccCCccEEEEE
Confidence 110 01123457888999888777554 5688999999999998 44433322211 23689999999
Q ss_pred ccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHH
Q psy17912 314 ATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITR 393 (779)
Q Consensus 314 AT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~ 393 (779)
||+|..+..+... ..++.... ...+. .+...+..++.. ..+++||||++++.++.+++
T Consensus 151 AT~~~~~~~~~~~--~~pi~~~~---------------~~~~~-~~~~~~~~~l~~----~~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 151 ATPPGTTDPFPDS--NAPIHDLQ---------------DEIPD-RAWSSGYEWITE----YAGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp SSCTTCCCSSCCC--SSCEEEEE---------------CCCCS-SCCSSCCHHHHH----CCSCEEEECSCHHHHHHHHH
T ss_pred cCCCcchhhhccC--CCCeEEec---------------ccCCc-chhHHHHHHHHh----cCCCEEEEeCChHHHHHHHH
Confidence 9998653221110 11221110 01111 111111223332 36789999999999999999
Q ss_pred HHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEE---------------
Q psy17912 394 SVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQ--------------- 458 (779)
Q Consensus 394 ~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~--------------- 458 (779)
.|+..++.+..+||. +|..+++.|++|+.+|||||+++++|||+|+ + +||+
T Consensus 209 ~L~~~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~---------~VI~~G~~~~~~~~~~~~~ 274 (459)
T 2z83_A 209 CLQRAGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-S---------RVIDCRKSVKPTILEEGEG 274 (459)
T ss_dssp HHHHTTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-S---------EEEECCEECCEEEECSSSC
T ss_pred HHHhcCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-C---------EEEECCccccccccccccc
Confidence 999999999999995 7889999999999999999999999999998 6 6666
Q ss_pred -----cCCCCCHHHHHHHhccCCCCCC-eEEEEE
Q psy17912 459 -----YKESQQKRDRVLNEFRIGRASI-LVSHYN 486 (779)
Q Consensus 459 -----y~~p~s~~~yiQR~GRaGR~g~-~~~~~~ 486 (779)
|+.|.+..+|+||+||+||.|. .+.++.
T Consensus 275 ~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~ 308 (459)
T 2z83_A 275 RVILGNPSPITSASAAQRRGRVGRNPNQVGDEYH 308 (459)
T ss_dssp EEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred ccccccCCCCCHHHHHHhccccCCCCCCCCeEEE
Confidence 7899999999999999999986 554443
No 56
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=1.3e-32 Score=281.68 Aligned_cols=213 Identities=30% Similarity=0.518 Sum_probs=184.5
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCC
Q psy17912 121 KCVPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGE 200 (779)
Q Consensus 121 ~~~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~ 200 (779)
...|+++.+|+++++++.+.+.+.++||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 3467788999999999999999999999999999999999999999999999999999999999999887542 24
Q ss_pred CCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEE
Q psy17912 201 GPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLV 280 (779)
Q Consensus 201 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lV 280 (779)
++++||++|+++|+.|+.+.++++....++.+..++|+.....+...+.. ++|+|+||++|.+.+......+.++++||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 67899999999999999999999998889999999998877666555544 89999999999999988888889999999
Q ss_pred EccchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCC
Q psy17912 281 LDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSL 339 (779)
Q Consensus 281 iDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~ 339 (779)
|||||++.+++|...+..++..++++.|+++||||+++.+..+++.++.+|+.+.+...
T Consensus 161 iDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 161 LDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999988876543
No 57
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.8e-32 Score=276.83 Aligned_cols=202 Identities=33% Similarity=0.581 Sum_probs=185.5
Q ss_pred CCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE
Q psy17912 128 QHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL 207 (779)
Q Consensus 128 ~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil 207 (779)
.+|+++++++.+++.+.++||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999876542 245789999
Q ss_pred ccCHHHHHHHHHHHHHhcccC-CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchh
Q psy17912 208 APTRELAQQIETVANDFGSAT-ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADR 286 (779)
Q Consensus 208 ~Ptr~La~Q~~~~~~~~~~~~-~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~ 286 (779)
+||++|+.|+.+.++++.... ++.+..++|+.....+...+..+++|+|+||++|.+.+..+...+.++++|||||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999998776 7889999999887777777777899999999999999988878899999999999999
Q ss_pred hhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEE
Q psy17912 287 MLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQL 334 (779)
Q Consensus 287 l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i 334 (779)
+.+.+|...+..++..++++.|+++||||+|+.+..+++.++.+|+.+
T Consensus 158 ~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 158 LLSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HTSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred hHhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 999999999999999998899999999999999999999999988765
No 58
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.1e-32 Score=284.09 Aligned_cols=210 Identities=27% Similarity=0.456 Sum_probs=184.3
Q ss_pred CCCCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCC
Q psy17912 121 KCVPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGE 200 (779)
Q Consensus 121 ~~~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~ 200 (779)
...|.+..+|+++++++.+.+.+.++||..|+++|.++++.+++++|+++++|||+|||++|++|++..+... ..
T Consensus 17 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~~ 91 (230)
T 2oxc_A 17 DVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----NL 91 (230)
T ss_dssp -------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SC
T ss_pred CCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----CC
Confidence 4477888999999999999999999999999999999999999999999999999999999999999877542 23
Q ss_pred CCEEEEEccCHHHHHHHHHHHHHhcccC-CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEE
Q psy17912 201 GPIVLVLAPTRELAQQIETVANDFGSAT-ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYL 279 (779)
Q Consensus 201 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~-~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~l 279 (779)
++++||++||++|+.|+.+.++++.... ++++..++|+.....+...+ .+++|+|+||++|.+++..+...+.++++|
T Consensus 92 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~l 170 (230)
T 2oxc_A 92 STQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-KKCHIAVGSPGRIKQLIELDYLNPGSIRLF 170 (230)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-TSCSEEEECHHHHHHHHHTTSSCGGGCCEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-cCCCEEEECHHHHHHHHhcCCcccccCCEE
Confidence 5789999999999999999999998765 78899999988776655554 468999999999999998877788999999
Q ss_pred EEccchhhhcCC-chHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEec
Q psy17912 280 VLDEADRMLDMG-FEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNI 336 (779)
Q Consensus 280 ViDEaH~l~~~~-f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i 336 (779)
||||||++.+++ |...+..++..+++..|++++|||+|+.+.+++..++.+|+.+.+
T Consensus 171 ViDEah~~~~~~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p~~i~~ 228 (230)
T 2oxc_A 171 ILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRL 228 (230)
T ss_dssp EESSHHHHHSTTSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSCEEECC
T ss_pred EeCCchHhhcCcchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCCeEEEc
Confidence 999999999997 999999999999889999999999999999999999999887754
No 59
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=5.6e-33 Score=288.73 Aligned_cols=230 Identities=31% Similarity=0.519 Sum_probs=196.9
Q ss_pred HHHHhhhcCCeEEecccccccccCCCCCCCCCCCCCCcCC----CCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEE
Q psy17912 94 EVESYLNHHDVTVKGRYYLLRLESRPGKCVPRPIQHFEEC----NFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLV 169 (779)
Q Consensus 94 e~~~~~~~~~i~~~g~~~~~~~~~~~~~~~p~pi~~f~~~----~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvi 169 (779)
++..++++..+.+.+.. .|.|+.+|+++ ++++.+++.+.+.||..|+|+|.++++.++++++++
T Consensus 3 ~~~~~~~~~~i~~~~~~------------~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l 70 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTD------------LPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELL 70 (245)
T ss_dssp HHHHHHHHTTEEEESSS------------CCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEE
T ss_pred hHHHHHHhCceEecCCC------------CCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 46778888899988877 89999999987 899999999999999999999999999999999999
Q ss_pred EEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH-HHh
Q psy17912 170 AIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQV-KAL 248 (779)
Q Consensus 170 i~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~-~~l 248 (779)
+++|||+|||++|++|++..+... ...++++||++||++|+.|+.+.++++....++.+..++|+....... ...
T Consensus 71 ~~a~TGsGKT~~~~l~~l~~l~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (245)
T 3dkp_A 71 ASAPTGSGKTLAFSIPILMQLKQP----ANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKS 146 (245)
T ss_dssp EECCTTSCHHHHHHHHHHHHHCSC----CSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTS
T ss_pred EECCCCCcHHHHHHHHHHHHHhhc----ccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhh
Confidence 999999999999999999988642 234678999999999999999999999988888887776653222111 122
Q ss_pred hcCCeEEEeChHHHHHHHHcC--CcCCCCeeEEEEccchhhhc---CCchHHHHHHHhhc-CCCCceEEeeccccHHHHH
Q psy17912 249 QTGAEIVIATPGRLIDYLEQG--TINLHRTSYLVLDEADRMLD---MGFEPQIRKIIGQI-RPDRQVLMWSATWPKEVQK 322 (779)
Q Consensus 249 ~~~~~IiV~Tpe~Ll~~l~~~--~~~l~~i~~lViDEaH~l~~---~~f~~~l~~il~~l-~~~~qilllSAT~~~~v~~ 322 (779)
..+++|+|+||++|.+++... ...+.++++|||||||++.+ .+|...+..++..+ .++.|+++||||+|++++.
T Consensus 147 ~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~ 226 (245)
T 3dkp_A 147 SKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQ 226 (245)
T ss_dssp CCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHH
T ss_pred cCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHH
Confidence 346899999999999999776 46788999999999999998 46888888888766 4578999999999999999
Q ss_pred HHHHhccCcEEEecCCC
Q psy17912 323 LAEDFLVDYVQLNIGSL 339 (779)
Q Consensus 323 l~~~~l~~~~~i~i~~~ 339 (779)
+++.++.+|+.+.++..
T Consensus 227 ~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 227 WCKLNLDNVISVSIGAR 243 (245)
T ss_dssp HHHHHSSSCEEEEECC-
T ss_pred HHHHhCCCCEEEEeCCC
Confidence 99999999999988654
No 60
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=4.3e-33 Score=284.66 Aligned_cols=209 Identities=31% Similarity=0.532 Sum_probs=185.6
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEE
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVL 205 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vL 205 (779)
|..+|+++++++.+.+.+.++||.+|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 45679999999999999999999999999999999999999999999999999999999999887542 2367899
Q ss_pred EEccCHHHHHHHHHHHHHhcccC----CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEE
Q psy17912 206 VLAPTRELAQQIETVANDFGSAT----ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVL 281 (779)
Q Consensus 206 il~Ptr~La~Q~~~~~~~~~~~~----~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lVi 281 (779)
|++||++|+.|+.+.++++.... ++.+..++|+.........+..+++|+|+||++|.+.+..+...+.++++|||
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999988766 68888889887655554445557899999999999999887788899999999
Q ss_pred ccchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecCCC
Q psy17912 282 DEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSL 339 (779)
Q Consensus 282 DEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~ 339 (779)
||||++.+++|...+..++..++++.|+++||||+|+++.++++.++.+|..+.+...
T Consensus 157 DEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~~~~~~ 214 (219)
T 1q0u_A 157 DEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHVLEH 214 (219)
T ss_dssp CSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEEECC--
T ss_pred cCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEEEeecc
Confidence 9999999999999999999999889999999999999999999999999988876543
No 61
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=293.24 Aligned_cols=207 Identities=29% Similarity=0.479 Sum_probs=183.9
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCC
Q psy17912 123 VPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSG--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGE 200 (779)
Q Consensus 123 ~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~ 200 (779)
.+.++.+|++++|++.+++.|.++||..|+|+|.++||.++++ +|+++++|||||||++|++|++.++... ..
T Consensus 87 p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~-----~~ 161 (300)
T 3fmo_B 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NK 161 (300)
T ss_dssp CCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTT-----SC
T ss_pred CcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhcc-----CC
Confidence 3345789999999999999999999999999999999999987 9999999999999999999999887542 34
Q ss_pred CCEEEEEccCHHHHHHHHHHHHHhcccC-CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHc-CCcCCCCeeE
Q psy17912 201 GPIVLVLAPTRELAQQIETVANDFGSAT-ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQ-GTINLHRTSY 278 (779)
Q Consensus 201 ~~~vLil~Ptr~La~Q~~~~~~~~~~~~-~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~-~~~~l~~i~~ 278 (779)
++++|||+||++||.|+++.++.++... ++.+..++|+....... ..+++|+|+||++|++++.. ..+.+.++++
T Consensus 162 ~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~ 238 (300)
T 3fmo_B 162 YPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKLKFIDPKKIKV 238 (300)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTTCCCCGGGCSE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhcCCCChhhceE
Confidence 6789999999999999999999998764 68888888887654332 45679999999999999965 4567899999
Q ss_pred EEEccchhhhc-CCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecC
Q psy17912 279 LVLDEADRMLD-MGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIG 337 (779)
Q Consensus 279 lViDEaH~l~~-~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~ 337 (779)
|||||||+|++ .+|...+..++..+++++|+++||||+|+.+..++..++.+|+.+.+.
T Consensus 239 lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~i~~~ 298 (300)
T 3fmo_B 239 FVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLK 298 (300)
T ss_dssp EEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEEEEC
T ss_pred EEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeEEEec
Confidence 99999999998 689999999999999999999999999999999999999999988764
No 62
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.3e-32 Score=280.45 Aligned_cols=212 Identities=32% Similarity=0.472 Sum_probs=188.8
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCE
Q psy17912 124 PRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPI 203 (779)
Q Consensus 124 p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~ 203 (779)
++++.+|+++++++.+.+.+.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++..+..... ....+++
T Consensus 21 ~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~-~~~~~~~ 99 (236)
T 2pl3_A 21 VNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQW-TSTDGLG 99 (236)
T ss_dssp GGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCC
T ss_pred CcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcc-cccCCce
Confidence 456788999999999999999999999999999999999999999999999999999999999988865321 1234678
Q ss_pred EEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcC-CcCCCCeeEEEEc
Q psy17912 204 VLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQG-TINLHRTSYLVLD 282 (779)
Q Consensus 204 vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~-~~~l~~i~~lViD 282 (779)
+||++||++|+.|+.+.+++++...++.+..++|+.....+...+ .+++|+|+||++|.+.+... ...+.++++||||
T Consensus 100 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViD 178 (236)
T 2pl3_A 100 VLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLLQHMDETVSFHATDLQMLVLD 178 (236)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEET
T ss_pred EEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHHHHHHhcCCcccccccEEEEe
Confidence 999999999999999999999988889999999998877666555 46899999999999988765 4678899999999
Q ss_pred cchhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEecC
Q psy17912 283 EADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIG 337 (779)
Q Consensus 283 EaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~ 337 (779)
|||++.+++|...+..++..++++.|+++||||+++.++.+++.++.+|..+.+.
T Consensus 179 Eah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 179 EADRILDMGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp THHHHHHTTTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred ChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 9999999999999999999999999999999999999999999999999888664
No 63
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=1.1e-31 Score=271.27 Aligned_cols=204 Identities=41% Similarity=0.688 Sum_probs=186.0
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc
Q psy17912 129 HFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA 208 (779)
Q Consensus 129 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~ 208 (779)
+|+++++++.+.+.+.+.||..|+|+|.++++.+++++++++++|||+|||++|++|++..+..... ...++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE--RGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC--TTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCcEEEEE
Confidence 6889999999999999999999999999999999999999999999999999999999988764321 23467899999
Q ss_pred cCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhh
Q psy17912 209 PTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRML 288 (779)
Q Consensus 209 Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~ 288 (779)
|+++|+.|+.+.++++... +++..++|+.........+..+++|+|+||+++.+.+..+...+.++++||+||||++.
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999999998764 67888999988877777777789999999999999998888889999999999999999
Q ss_pred cCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEec
Q psy17912 289 DMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNI 336 (779)
Q Consensus 289 ~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i 336 (779)
+++|...+..++..++++.|++++|||+|+.++++++.++.+|+.+.+
T Consensus 158 ~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~~ 205 (207)
T 2gxq_A 158 SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205 (207)
T ss_dssp HTTCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEEC
T ss_pred ccchHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEEc
Confidence 999999999999999889999999999999999999999999987765
No 64
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.98 E-value=1.2e-31 Score=281.80 Aligned_cols=203 Identities=36% Similarity=0.546 Sum_probs=180.8
Q ss_pred CCCcCCC--CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEE
Q psy17912 128 QHFEECN--FPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVL 205 (779)
Q Consensus 128 ~~f~~~~--l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vL 205 (779)
.+|.+++ +++.+++.+.++||.+|+|+|.++++.++.++|+++++|||||||++|++|++..+...+.. ...++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~-~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFM-PRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCC-GGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhcccc-ccCCceEE
Confidence 4566665 99999999999999999999999999999999999999999999999999999988764321 12467899
Q ss_pred EEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC-cCCCCeeEEEEccc
Q psy17912 206 VLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT-INLHRTSYLVLDEA 284 (779)
Q Consensus 206 il~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~-~~l~~i~~lViDEa 284 (779)
|++||++||.|+.+.+++++...+..+..++|+.....+...+..+++|+|+||+++.+.+.... ..+.++++||||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 99999999999999999999988999999999998888877787889999999999999887654 67889999999999
Q ss_pred hhhhcCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCc
Q psy17912 285 DRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDY 331 (779)
Q Consensus 285 H~l~~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~ 331 (779)
|++.+++|...+..++..+++..|+++||||+|++++.+++.++.++
T Consensus 211 h~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~ 257 (262)
T 3ly5_A 211 DRILDVGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKE 257 (262)
T ss_dssp HHHHHTTCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HHHhhhhHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999888654
No 65
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.98 E-value=2.3e-31 Score=312.22 Aligned_cols=276 Identities=17% Similarity=0.051 Sum_probs=208.2
Q ss_pred HHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCC
Q psy17912 160 PIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGA 239 (779)
Q Consensus 160 ~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~ 239 (779)
...+++++++++||||||||+ +++..+... +..+|++||++||.|+++.+++. ++.+..++|+.
T Consensus 150 ar~l~rk~vlv~apTGSGKT~----~al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~lltG~~ 213 (677)
T 3rc3_A 150 ARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDLVTGEE 213 (677)
T ss_dssp HHTSCCEEEEEECCTTSSHHH----HHHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----TCCEEEECSSC
T ss_pred HHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEEEECCe
Confidence 445688999999999999997 444444442 23599999999999999998886 67888888876
Q ss_pred CChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcC-CCCceEEeeccccH
Q psy17912 240 PKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIR-PDRQVLMWSATWPK 318 (779)
Q Consensus 240 ~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~-~~~qilllSAT~~~ 318 (779)
.... .......+++++|++.+. ....+++|||||||++.+.+|...+..++..++ +..+++++|||.+
T Consensus 214 ~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~- 282 (677)
T 3rc3_A 214 RVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID- 282 (677)
T ss_dssp EECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH-
T ss_pred eEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH-
Confidence 5411 000112678888875322 356789999999999999999999999988887 6789999999964
Q ss_pred HHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC
Q psy17912 319 EVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK 398 (779)
Q Consensus 319 ~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~ 398 (779)
.+..+.... ...+.+...... . ... .... .+ ..+.. .....||||+++++++.+++.|.+.
T Consensus 283 ~i~~l~~~~-~~~~~v~~~~r~--~--~l~----~~~~-----~l-~~l~~----~~~g~iIf~~s~~~ie~la~~L~~~ 343 (677)
T 3rc3_A 283 LVMELMYTT-GEEVEVRDYKRL--T--PIS----VLDH-----AL-ESLDN----LRPGDCIVCFSKNDIYSVSRQIEIR 343 (677)
T ss_dssp HHHHHHHHH-TCCEEEEECCCS--S--CEE----ECSS-----CC-CSGGG----CCTTEEEECSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhc-CCceEEEEeeec--c--hHH----HHHH-----HH-HHHHh----cCCCCEEEEcCHHHHHHHHHHHHhc
Confidence 344444433 233332211100 0 000 0000 00 01111 1345689999999999999999999
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHHhc--CCCcEEEEecccccccccCcccccccccceeEEEEcCC--------------C
Q psy17912 399 GWAAVAIHGNKSQQERDRVLNEFRI--GRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKE--------------S 462 (779)
Q Consensus 399 g~~v~~ihg~~~~~eR~~il~~F~~--G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~--------------p 462 (779)
++.+..+||+|++++|..+++.|++ |+.+|||||+++++|||+ .++ +||+++. |
T Consensus 344 g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~e~GlDi-~v~---------~VI~~~~~k~~~~~~G~~~~~p 413 (677)
T 3rc3_A 344 GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNL-SIR---------RIIFYSLIKPSINEKGERELEP 413 (677)
T ss_dssp TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGGGSSCCC-CBS---------EEEESCSBC-----------CB
T ss_pred CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcHHHCCcCc-Ccc---------EEEECCccccccccCCcccccc
Confidence 9999999999999999999999999 889999999999999999 788 9999998 7
Q ss_pred CCHHHHHHHhccCCCCCC---eEEEEEcChHH
Q psy17912 463 QQKRDRVLNEFRIGRASI---LVSHYNKSQQE 491 (779)
Q Consensus 463 ~s~~~yiQR~GRaGR~g~---~~~~~~~~~~e 491 (779)
.+..+|+||+|||||.|. .|.++.....+
T Consensus 414 ~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d 445 (677)
T 3rc3_A 414 ITTSQALQIAGRAGRFSSRFKEGEVTTMNHED 445 (677)
T ss_dssp CCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH
T ss_pred CCHHHHHHHhcCCCCCCCCCCCEEEEEEecch
Confidence 899999999999999995 47888877655
No 66
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.98 E-value=1.6e-32 Score=321.75 Aligned_cols=306 Identities=16% Similarity=0.108 Sum_probs=186.1
Q ss_pred CCCHHHHHHHHHHhc----C-CCEEEEccCCCChhHHHHHHHHHHHhccC-CCCCCCCCEEEEEccCHHHHHHHH-HHHH
Q psy17912 150 APTAIQAQGWPIALS----G-CDLVAIAKTGSGKTLGYIAPAIVHVNSQR-PLRSGEGPIVLVLAPTRELAQQIE-TVAN 222 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~----g-~dvii~apTGsGKTl~~~lp~l~~l~~~~-~~~~~~~~~vLil~Ptr~La~Q~~-~~~~ 222 (779)
.|+|+|.++++.++. + +++++++|||+|||++++..+...+.... ......++++|||+|+++|+.|+. +.++
T Consensus 178 ~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~~ 257 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTFT 257 (590)
T ss_dssp -CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CCT
T ss_pred CchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 699999999999875 4 56999999999999997655544443310 001124678999999999999998 7776
Q ss_pred HhcccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHc----CCcCCCCeeEEEEccchhhhcCCchHHHHH
Q psy17912 223 DFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQ----GTINLHRTSYLVLDEADRMLDMGFEPQIRK 298 (779)
Q Consensus 223 ~~~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~----~~~~l~~i~~lViDEaH~l~~~~f~~~l~~ 298 (779)
.+.. .+..+.++. ...+.+|+|+||++|...+.. ..+....+++|||||||++.... ...+..
T Consensus 258 ~~~~----~~~~~~~~~--------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~ 324 (590)
T 3h1t_A 258 PFGD----ARHKIEGGK--------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWRE 324 (590)
T ss_dssp TTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHH
T ss_pred hcch----hhhhhhccC--------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHH
Confidence 6643 333333322 234579999999999887642 22446679999999999987642 245566
Q ss_pred HHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEE------------------ecCCCCC--CC--c-c-------ceE
Q psy17912 299 IIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQL------------------NIGSLNP--TA--N-H-------NIV 348 (779)
Q Consensus 299 il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i------------------~i~~~~~--~~--~-~-------~i~ 348 (779)
++..++ ..++++||||+..........++..++.. .+..... .. . . .+.
T Consensus 325 il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (590)
T 3h1t_A 325 ILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIP 403 (590)
T ss_dssp HHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC------------------
T ss_pred HHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccc
Confidence 676664 57899999997633222222222221111 1100000 00 0 0 000
Q ss_pred EEEEeccc-------cchhHHHHHHHHHhc--cCCCCcEEEEecchhHHHHHHHHHHhCCC--------eEEEEcCCCCH
Q psy17912 349 QIVDVCQE-------HEKDYKLQGLLSQIG--SERTSKTIIFVETKRKADDITRSVRNKGW--------AAVAIHGNKSQ 411 (779)
Q Consensus 349 ~~~~~~~~-------~~k~~~L~~ll~~i~--~~~~~kvLVF~~s~~~ae~L~~~L~~~g~--------~v~~ihg~~~~ 411 (779)
........ ..+...+...+..+. ....+++||||+++.+|+.+++.|.+.+. .+..+||+++.
T Consensus 404 ~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~ 483 (590)
T 3h1t_A 404 DGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK 483 (590)
T ss_dssp -----CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH
T ss_pred cccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH
Confidence 00000000 011122222222111 13458999999999999999999987543 27889998764
Q ss_pred HHHHHHHHHHhcCCCc---EEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC
Q psy17912 412 QERDRVLNEFRIGRAS---ILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 412 ~eR~~il~~F~~G~~~---ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g 479 (779)
+|..+++.|++|+.+ |||||+++++|+|+|.++ +||+|++|.++..|+||+||+||.+
T Consensus 484 -~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~---------~Vi~~~~~~s~~~~~Q~iGR~~R~~ 544 (590)
T 3h1t_A 484 -IGKGHLSRFQELETSTPVILTTSQLLTTGVDAPTCK---------NVVLARVVNSMSEFKQIVGRGTRLR 544 (590)
T ss_dssp -HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEE---------EEEEESCCCCHHHHHHHHTTSCCCB
T ss_pred -HHHHHHHHHhCCCCCCCEEEEECChhhcCccchhee---------EEEEEecCCChHHHHHHHhhhcccC
Confidence 799999999998866 899999999999999988 9999999999999999999999965
No 67
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.98 E-value=1.9e-31 Score=272.49 Aligned_cols=208 Identities=29% Similarity=0.499 Sum_probs=182.3
Q ss_pred CCCCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCC
Q psy17912 123 VPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGP 202 (779)
Q Consensus 123 ~p~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~ 202 (779)
.+.+..+|+++++++.+.+.+.++||..|+|+|.++++.+++++++++++|||+|||++|++|++..+... ..++
T Consensus 9 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~~~~ 83 (220)
T 1t6n_A 9 VSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQV 83 (220)
T ss_dssp -----CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----TTCC
T ss_pred ccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----CCCE
Confidence 44455679999999999999999999999999999999999999999999999999999999999876432 2356
Q ss_pred EEEEEccCHHHHHHHHHHHHHhcccC-CceEEEEeCCCCChhhHHHhhc-CCeEEEeChHHHHHHHHcCCcCCCCeeEEE
Q psy17912 203 IVLVLAPTRELAQQIETVANDFGSAT-ATRVACVFGGAPKGPQVKALQT-GAEIVIATPGRLIDYLEQGTINLHRTSYLV 280 (779)
Q Consensus 203 ~vLil~Ptr~La~Q~~~~~~~~~~~~-~l~v~~~~gg~~~~~~~~~l~~-~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lV 280 (779)
++||++||++|+.|+.+.++++.... ++++..++|+.....+...+.. .++|+|+||++|.+.+......+.++++||
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lV 163 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFI 163 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEE
Confidence 89999999999999999999998766 7899999999887666666554 469999999999999988778899999999
Q ss_pred Eccchhhhc-CCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhccCcEEEe
Q psy17912 281 LDEADRMLD-MGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLN 335 (779)
Q Consensus 281 iDEaH~l~~-~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l~~~~~i~ 335 (779)
|||||++.+ .+|...+..++..++++.|++++|||+|+.++++++.++.+|+.+.
T Consensus 164 iDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 219 (220)
T 1t6n_A 164 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 219 (220)
T ss_dssp EESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSSCEEEE
T ss_pred EcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCCCeEEe
Confidence 999999987 4788889999998888999999999999999999999999988764
No 68
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97 E-value=1.8e-30 Score=318.65 Aligned_cols=311 Identities=16% Similarity=0.041 Sum_probs=212.1
Q ss_pred CCCCHHHHHHHHHHhcC--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc
Q psy17912 149 QAPTAIQAQGWPIALSG--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 226 (779)
.+|+|+|.+++..++.. .++|++++||+|||++++..+...+... ...++|||||+ +|+.|+..++.+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 46899999999988864 4799999999999999988777666542 23369999999 99999999986654
Q ss_pred cCCceEEEEeCCCCChhhHH---HhhcCCeEEEeChHHHHHHHHc-CCcCCCCeeEEEEccchhhhcCCch--HHHHHHH
Q psy17912 227 ATATRVACVFGGAPKGPQVK---ALQTGAEIVIATPGRLIDYLEQ-GTINLHRTSYLVLDEADRMLDMGFE--PQIRKII 300 (779)
Q Consensus 227 ~~~l~v~~~~gg~~~~~~~~---~l~~~~~IiV~Tpe~Ll~~l~~-~~~~l~~i~~lViDEaH~l~~~~f~--~~l~~il 300 (779)
++.+..+.++.... ... ......+|+|+|++.+...... ..+....+++|||||||++...... ..+..+.
T Consensus 224 --~l~v~v~~~~~~~~-~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~ 300 (968)
T 3dmq_A 224 --NLRFALFDDERYAE-AQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIE 300 (968)
T ss_dssp --CCCCEECCHHHHHH-HHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHH
T ss_pred --CCCEEEEccchhhh-hhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHH
Confidence 55555544432111 111 1112469999999877532110 1123457899999999998765422 1222232
Q ss_pred hhcCCCCceEEeeccccH----HHHHHH----------------------------HHhccC-c----------------
Q psy17912 301 GQIRPDRQVLMWSATWPK----EVQKLA----------------------------EDFLVD-Y---------------- 331 (779)
Q Consensus 301 ~~l~~~~qilllSAT~~~----~v~~l~----------------------------~~~l~~-~---------------- 331 (779)
.......++++||||+.. ++..++ ..+... +
T Consensus 301 ~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~ 380 (968)
T 3dmq_A 301 QLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQ 380 (968)
T ss_dssp HHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTT
T ss_pred HHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcch
Confidence 222345679999999631 011100 000000 0
Q ss_pred -----------------------------------EEEecCCCCC-CC-ccceEEE-E----------------------
Q psy17912 332 -----------------------------------VQLNIGSLNP-TA-NHNIVQI-V---------------------- 351 (779)
Q Consensus 332 -----------------------------------~~i~i~~~~~-~~-~~~i~~~-~---------------------- 351 (779)
+.+....... .. ....... +
T Consensus 381 ~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (968)
T 3dmq_A 381 DIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSA 460 (968)
T ss_dssp CSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSG
T ss_pred hhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhh
Confidence 0000000000 00 0000000 0
Q ss_pred ----------------------EeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHh-CCCeEEEEcCC
Q psy17912 352 ----------------------DVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRN-KGWAAVAIHGN 408 (779)
Q Consensus 352 ----------------------~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~-~g~~v~~ihg~ 408 (779)
.......|...+..++.. ..+.++||||+++..++.+++.|.. .|+++..+||+
T Consensus 461 ~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~---~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~ 537 (968)
T 3dmq_A 461 EDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTS---HRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEG 537 (968)
T ss_dssp GGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHH---TSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTT
T ss_pred HHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHh---CCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 011222345556666554 4678999999999999999999995 69999999999
Q ss_pred CCHHHHHHHHHHHhcCC--CcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeE
Q psy17912 409 KSQQERDRVLNEFRIGR--ASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILV 482 (779)
Q Consensus 409 ~~~~eR~~il~~F~~G~--~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~ 482 (779)
|++.+|..+++.|++|+ ++|||||+++++|+|+|.++ +||+|++|.++..|+||+||+||.|..+
T Consensus 538 ~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~---------~VI~~d~p~~~~~~~Q~~GR~~R~Gq~~ 604 (968)
T 3dmq_A 538 MSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFAS---------HMVMFDLPFNPDLLEQRIGRLDRIGQAH 604 (968)
T ss_dssp SCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCC---------EEECSSCCSSHHHHHHHHHTTSCSSSCS
T ss_pred CCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCc---------EEEEecCCCCHHHHHHHhhccccCCCCc
Confidence 99999999999999998 99999999999999999998 9999999999999999999999998554
No 69
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.97 E-value=2.6e-29 Score=288.47 Aligned_cols=301 Identities=17% Similarity=0.155 Sum_probs=208.8
Q ss_pred CCCCHHHHHHHHHHh----cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 149 QAPTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
..|+|+|.++++.+. .++++|+.++||+|||++++..+...... ....++|||+|+ +|+.||.++++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~------~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKE------NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHT------TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhc------CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 469999999998873 67899999999999999876555443322 123469999995 6889999999998
Q ss_pred cccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcC
Q psy17912 225 GSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIR 304 (779)
Q Consensus 225 ~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~ 304 (779)
.. ++++..+.|+... ......+|+|+||+.+..... +....+++||+||||++.+.. ....+.+..+
T Consensus 109 ~~--~~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~~--~~~~~~l~~l- 175 (500)
T 1z63_A 109 AP--HLRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNPQ--TKIFKAVKEL- 175 (500)
T ss_dssp CT--TSCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCTT--SHHHHHHHTS-
T ss_pred CC--CceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCHh--HHHHHHHHhh-
Confidence 75 4566666665532 112347999999998875433 234578999999999987653 2344555555
Q ss_pred CCCceEEeeccccH----HHHHHH---------------------------------HHhccCcEEEecCCCC----CCC
Q psy17912 305 PDRQVLMWSATWPK----EVQKLA---------------------------------EDFLVDYVQLNIGSLN----PTA 343 (779)
Q Consensus 305 ~~~qilllSAT~~~----~v~~l~---------------------------------~~~l~~~~~i~i~~~~----~~~ 343 (779)
+..+.+++|||+.. ++..++ ..++ .++.+.....+ ...
T Consensus 176 ~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~~~~l 254 (500)
T 1z63_A 176 KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAIINDL 254 (500)
T ss_dssp CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHHHTTS
T ss_pred ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccchhhcC
Confidence 34678999999722 111111 1111 11211111100 001
Q ss_pred ccceEEEEEec--------------------------------------------------------cccchhHHHHHHH
Q psy17912 344 NHNIVQIVDVC--------------------------------------------------------QEHEKDYKLQGLL 367 (779)
Q Consensus 344 ~~~i~~~~~~~--------------------------------------------------------~~~~k~~~L~~ll 367 (779)
+......+... ....|...+.+++
T Consensus 255 p~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l 334 (500)
T 1z63_A 255 PDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEII 334 (500)
T ss_dssp CSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHH
Confidence 11111111110 0122334445555
Q ss_pred HHhccCCCCcEEEEecchhHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEEecccccccccCcc
Q psy17912 368 SQIGSERTSKTIIFVETKRKADDITRSVRNK-GWAAVAIHGNKSQQERDRVLNEFRIG-RAS-ILVSQYNKSQQERDRVL 444 (779)
Q Consensus 368 ~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~-g~~v~~ihg~~~~~eR~~il~~F~~G-~~~-ILVAT~v~~~GIDip~v 444 (779)
..+.. .+.++||||+++..++.+++.|... ++.+..+||++++.+|.++++.|++| ..+ +||+|+++++|+|++.+
T Consensus 335 ~~~~~-~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~ 413 (500)
T 1z63_A 335 EEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 413 (500)
T ss_dssp HHHHT-TTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTC
T ss_pred HHHHc-cCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhC
Confidence 55432 5789999999999999999999985 89999999999999999999999998 555 89999999999999999
Q ss_pred cccccccceeEEEEcCCCCCHHHHHHHhccCCCCCC
Q psy17912 445 NEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASI 480 (779)
Q Consensus 445 ~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~ 480 (779)
+ .||+|++|+++..|.|++||++|.|.
T Consensus 414 ~---------~vi~~d~~~~~~~~~Q~~gR~~R~Gq 440 (500)
T 1z63_A 414 N---------RVIHFDRWWNPAVEDQATDRVYRIGQ 440 (500)
T ss_dssp S---------EEEESSCCSCC---CHHHHTTTTTTT
T ss_pred C---------EEEEeCCCCCcchHHHHHHHHHHcCC
Confidence 8 99999999999999999999999983
No 70
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.97 E-value=6.1e-28 Score=275.77 Aligned_cols=316 Identities=16% Similarity=0.145 Sum_probs=229.0
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
-.|+++|.-..-.+..|+ |+.+.||+|||+++.+|++..... |..+.|++|+..||.|-.+++..+...+
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 468999999998888887 999999999999999999876654 4569999999999999999999999999
Q ss_pred CceEEEEeCCC-------------------------------------------------CChhhHHHhhcCCeEEEeCh
Q psy17912 229 ATRVACVFGGA-------------------------------------------------PKGPQVKALQTGAEIVIATP 259 (779)
Q Consensus 229 ~l~v~~~~gg~-------------------------------------------------~~~~~~~~l~~~~~IiV~Tp 259 (779)
|+.+++++... ...++.+. ...|||+++|.
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~-aY~~DItYgTn 222 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKE-AYLCDVTYGTN 222 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHH-HHHSSEEEEEH
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHH-HhcCCCEEccC
Confidence 99999998721 01111122 22379999999
Q ss_pred HHH-HHHHHcCC------cCCCCeeEEEEccchhhhcCC----------------chHHHHHHHhhc-------------
Q psy17912 260 GRL-IDYLEQGT------INLHRTSYLVLDEADRMLDMG----------------FEPQIRKIIGQI------------- 303 (779)
Q Consensus 260 e~L-l~~l~~~~------~~l~~i~~lViDEaH~l~~~~----------------f~~~l~~il~~l------------- 303 (779)
.-| .++|..+. ...+.+.+.||||+|.++-.. +...+..++..+
T Consensus 223 ~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~vdek~~ 302 (822)
T 3jux_A 223 NEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKAR 302 (822)
T ss_dssp HHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEEECCSSS
T ss_pred cchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEEEEcccC
Confidence 877 45665432 235678999999999665211 000000000000
Q ss_pred -------------------------------------------CCC----------------------------------
Q psy17912 304 -------------------------------------------RPD---------------------------------- 306 (779)
Q Consensus 304 -------------------------------------------~~~---------------------------------- 306 (779)
..+
T Consensus 303 ~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQai 382 (822)
T 3jux_A 303 TIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAI 382 (822)
T ss_dssp CEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGGGHHHHH
T ss_pred eEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCchHHHHHH
Confidence 000
Q ss_pred ---------------------------CceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccch
Q psy17912 307 ---------------------------RQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEK 359 (779)
Q Consensus 307 ---------------------------~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k 359 (779)
.++.+||+|+..+..++.+.|..+.+.+ +...+..... .....+....+|
T Consensus 383 EaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~I--Ptnkp~~R~d-~~d~vy~t~~eK 459 (822)
T 3jux_A 383 EAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVI--PTHKPMIRKD-HDDLVFRTQKEK 459 (822)
T ss_dssp HHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCCEEEC--CCSSCCCCEE-CCCEEESSHHHH
T ss_pred HHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCeEEEE--CCCCCcceee-cCcEEEecHHHH
Confidence 4688999999888777777776553333 2222111111 112344555667
Q ss_pred hHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccc
Q psy17912 360 DYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQE 439 (779)
Q Consensus 360 ~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GI 439 (779)
...+...+.... ..+.|+||||+|++.++.|+..|.+.|+++..+||++.+.++..+...|+.| .|+|||++|+||+
T Consensus 460 ~~al~~~I~~~~-~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGt 536 (822)
T 3jux_A 460 YEKIVEEIEKRY-KKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGT 536 (822)
T ss_dssp HHHHHHHHHHHH-HHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTC
T ss_pred HHHHHHHHHHHh-hCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCc
Confidence 777777766542 2467899999999999999999999999999999997666666666667665 6999999999999
Q ss_pred ccC---cccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEE
Q psy17912 440 RDR---VLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHY 485 (779)
Q Consensus 440 Dip---~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~ 485 (779)
|++ +|. .+ ...+||+|+.|.+...|+||+||+||.|..|.++
T Consensus 537 DI~lg~~V~--~~--GglhVInte~Pes~r~y~qriGRTGRqG~~G~a~ 581 (822)
T 3jux_A 537 DIKLGPGVA--EL--GGLCIIGTERHESRRIDNQLRGRAGRQGDPGESI 581 (822)
T ss_dssp CCCCCTTTT--TT--TSCEEEESSCCSSHHHHHHHHTTSSCSSCCCEEE
T ss_pred CccCCcchh--hc--CCCEEEecCCCCCHHHHHHhhCccccCCCCeeEE
Confidence 997 221 11 1238999999999999999999999999888543
No 71
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.96 E-value=6.9e-27 Score=275.85 Aligned_cols=314 Identities=15% Similarity=0.132 Sum_probs=215.8
Q ss_pred CCCHHHHHHHHHHh---------cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHH
Q psy17912 150 APTAIQAQGWPIAL---------SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETV 220 (779)
Q Consensus 150 ~p~~~Q~~~i~~il---------~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 220 (779)
.++|+|.+++..+. .+...|+..+||+|||++++..+...+...+. ......++|||+|+ +|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~-~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPD-CKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTT-SSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCcc-ccCCCCcEEEEecH-HHHHHHHHH
Confidence 68999999999874 45679999999999999987777665544321 11223468999997 889999999
Q ss_pred HHHhcccCCceEEEEeCCCCChhhH--HHh-h-----cCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCc
Q psy17912 221 ANDFGSATATRVACVFGGAPKGPQV--KAL-Q-----TGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGF 292 (779)
Q Consensus 221 ~~~~~~~~~l~v~~~~gg~~~~~~~--~~l-~-----~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f 292 (779)
+.++... .+.+..++++....... ... . ...+|+|+|++.+.... ..+....+++||+||||++.+..
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ikn~~- 208 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHRLKNSD- 208 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGGCCTTC-
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECceecCChh-
Confidence 9998754 45666666664322111 111 1 13689999999887543 33445578999999999987643
Q ss_pred hHHHHHHHhhcCCCCceEEeeccccHH----HH---------------HHHHHhc-------------------------
Q psy17912 293 EPQIRKIIGQIRPDRQVLMWSATWPKE----VQ---------------KLAEDFL------------------------- 328 (779)
Q Consensus 293 ~~~l~~il~~l~~~~qilllSAT~~~~----v~---------------~l~~~~l------------------------- 328 (779)
......+..+. ....++||||+-.. +. .+...|.
T Consensus 209 -~~~~~al~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~~~~~~~ 286 (644)
T 1z3i_X 209 -NQTYLALNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAGEQKLQE 286 (644)
T ss_dssp -HHHHHHHHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHHHHHHHH
T ss_pred -hHHHHHHHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHHHHHHHH
Confidence 33344444453 45789999995110 00 0000000
Q ss_pred ----cCcEEEecCCCC--CCCccceEEEEEe-------------------------------------------------
Q psy17912 329 ----VDYVQLNIGSLN--PTANHNIVQIVDV------------------------------------------------- 353 (779)
Q Consensus 329 ----~~~~~i~i~~~~--~~~~~~i~~~~~~------------------------------------------------- 353 (779)
..+..+...... ...+......+..
T Consensus 287 L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~c~hp~l~ 366 (644)
T 1z3i_X 287 LISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKLCNHPALI 366 (644)
T ss_dssp HHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHHHHCTHHH
T ss_pred HHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHhCCHHHH
Confidence 000000000000 0000000000000
Q ss_pred ----------------------------ccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEE
Q psy17912 354 ----------------------------CQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAI 405 (779)
Q Consensus 354 ----------------------------~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~i 405 (779)
.....|...+..++..+....+.++||||+++..++.+++.|...++.+..+
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l 446 (644)
T 1z3i_X 367 YEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL 446 (644)
T ss_dssp HHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE
Confidence 0012233445555555544457899999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHhcCCC---cEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCC
Q psy17912 406 HGNKSQQERDRVLNEFRIGRA---SILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASI 480 (779)
Q Consensus 406 hg~~~~~eR~~il~~F~~G~~---~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~ 480 (779)
||+++..+|.++++.|++|.. .+||+|.++++|||++.++ .||+||+|+++..+.|++||++|.|.
T Consensus 447 ~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~---------~Vi~~d~~wnp~~~~Qa~gR~~R~Gq 515 (644)
T 1z3i_X 447 DGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGAN---------RLVMFDPDWNPANDEQAMARVWRDGQ 515 (644)
T ss_dssp CSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEE---------EEEECSCCSSHHHHHHHHTTSSSTTC
T ss_pred eCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCC---------EEEEECCCCCccHHHHHHHhhhhcCC
Confidence 999999999999999999865 4899999999999999988 99999999999999999999999983
No 72
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.3e-27 Score=283.51 Aligned_cols=308 Identities=14% Similarity=0.163 Sum_probs=217.7
Q ss_pred CCCCHHHHHHHHHHh----cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 149 QAPTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
.+++|+|.+++.++. .++++|++.+||+|||++++..+...+.... ....+||||| .+|+.|+.+++.++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-----~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR-----QNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-----CCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-----CCCCEEEEEC-chHHHHHHHHHHHH
Confidence 368999999998776 7889999999999999988776655443321 1235899999 67889999999998
Q ss_pred cccCCceEEEEeCCCCChhhHHHh------------hcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCc
Q psy17912 225 GSATATRVACVFGGAPKGPQVKAL------------QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGF 292 (779)
Q Consensus 225 ~~~~~l~v~~~~gg~~~~~~~~~l------------~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f 292 (779)
+. ++.+.+.+|........... ...++|+|+|++.+...... +....+++|||||||++...
T Consensus 309 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~-- 382 (800)
T 3mwy_W 309 AP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA-- 382 (800)
T ss_dssp ST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS--
T ss_pred CC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc--
Confidence 74 56677667665443332221 22478999999998764321 22336899999999998654
Q ss_pred hHHHHHHHhhcCCCCceEEeeccc----cHHHHHHHHHhccC-----------------------------cEEEecCCC
Q psy17912 293 EPQIRKIIGQIRPDRQVLMWSATW----PKEVQKLAEDFLVD-----------------------------YVQLNIGSL 339 (779)
Q Consensus 293 ~~~l~~il~~l~~~~qilllSAT~----~~~v~~l~~~~l~~-----------------------------~~~i~i~~~ 339 (779)
...+...+..+. ....++||||+ ..++..++.-+... +..+.....
T Consensus 383 ~s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~ 461 (800)
T 3mwy_W 383 ESSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKK 461 (800)
T ss_dssp SSHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGG
T ss_pred hhHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHH
Confidence 334555555553 44578899996 22222222211110 111100000
Q ss_pred C--CCCccceEEEEEe----------------------------------------------------------------
Q psy17912 340 N--PTANHNIVQIVDV---------------------------------------------------------------- 353 (779)
Q Consensus 340 ~--~~~~~~i~~~~~~---------------------------------------------------------------- 353 (779)
. ...+......+.+
T Consensus 462 dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~ 541 (800)
T 3mwy_W 462 DVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGK 541 (800)
T ss_dssp GGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----
T ss_pred hhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhccccc
Confidence 0 0000000000000
Q ss_pred ----------ccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy17912 354 ----------CQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRI 423 (779)
Q Consensus 354 ----------~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~ 423 (779)
.....|...|..++..+. ..+.++||||+....++.|.++|...|+.+..+||+++..+|..+++.|++
T Consensus 542 ~~~~~~~~~l~~~s~K~~~L~~lL~~~~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F~~ 620 (800)
T 3mwy_W 542 MTRENVLRGLIMSSGKMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHFNS 620 (800)
T ss_dssp CCSHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTTSS
T ss_pred ccHHHHHHHhhhcChHHHHHHHHHHHHh-hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhC
Confidence 001234555666666653 357899999999999999999999999999999999999999999999998
Q ss_pred CCC---cEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCC
Q psy17912 424 GRA---SILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRAS 479 (779)
Q Consensus 424 G~~---~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g 479 (779)
+.. .+|++|.+++.|||++.++ .||+|++|+++..++|++||+.|.|
T Consensus 621 ~~~~~~v~LlSt~agg~GlNL~~a~---------~VI~~D~~wnp~~~~Qa~gR~~RiG 670 (800)
T 3mwy_W 621 PDSNDFVFLLSTRAGGLGINLMTAD---------TVVIFDSDWNPQADLQAMARAHRIG 670 (800)
T ss_dssp TTCSCCCEEEEHHHHTTTCCCTTCC---------EEEESSCCSCSHHHHHHHTTTSCSS
T ss_pred CCCCceEEEEecccccCCCCccccc---------eEEEecCCCChhhHHHHHHHHHhcC
Confidence 654 5999999999999999998 9999999999999999999999998
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.95 E-value=7.7e-28 Score=293.50 Aligned_cols=326 Identities=10% Similarity=0.018 Sum_probs=215.3
Q ss_pred CCCHHHHHHHHHHhc--------------CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHH
Q psy17912 150 APTAIQAQGWPIALS--------------GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQ 215 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~--------------g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~ 215 (779)
.|+|+|.+|++.++. +++++++++||||||+++ ++++..+... ...+++|||+|+++|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~-----~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL-----DFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC-----TTCCEEEEEECGGGCCH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc-----CCCceEEEEeCcHHHHH
Confidence 599999999999875 368999999999999997 5666544321 22468999999999999
Q ss_pred HHHHHHHHhcccCCceEEEEeCCCCChhhHHHhh-cCCeEEEeChHHHHHHHHcCC--cCCCCeeEEEEccchhhhcCCc
Q psy17912 216 QIETVANDFGSATATRVACVFGGAPKGPQVKALQ-TGAEIVIATPGRLIDYLEQGT--INLHRTSYLVLDEADRMLDMGF 292 (779)
Q Consensus 216 Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~~~l~-~~~~IiV~Tpe~Ll~~l~~~~--~~l~~i~~lViDEaH~l~~~~f 292 (779)
|+.+.+..+... .+.++.+.......+. .+.+|+|+||++|...+.... ..+..+.+||+||||++..
T Consensus 345 Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~--- 415 (1038)
T 2w00_A 345 QTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF--- 415 (1038)
T ss_dssp HHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---
T ss_pred HHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---
Confidence 999999988653 1234455555555553 468999999999999876542 2456789999999999764
Q ss_pred hHHHHHHHhhcCCCCceEEeeccccHHHH----HHHHHhccC-----------------cEEEecCCCCCCCc------c
Q psy17912 293 EPQIRKIIGQIRPDRQVLMWSATWPKEVQ----KLAEDFLVD-----------------YVQLNIGSLNPTAN------H 345 (779)
Q Consensus 293 ~~~l~~il~~l~~~~qilllSAT~~~~v~----~l~~~~l~~-----------------~~~i~i~~~~~~~~------~ 345 (779)
...+..+...+ ++.++++||||+..... .....++.+ |+.+......+... .
T Consensus 416 ~~~~~~I~~~~-p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d 494 (1038)
T 2w00_A 416 GEAQKNLKKKF-KRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETD 494 (1038)
T ss_dssp HHHHHHHHHHC-SSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCC
T ss_pred hHHHHHHHHhC-CcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhcccccc
Confidence 23355566665 46899999999863211 011122222 22211110000000 0
Q ss_pred -----ceEEEEEeccccchhHHH-HHHHHHhccC--------CCCcEEEEecchhHHHHHHHHHHhCC------------
Q psy17912 346 -----NIVQIVDVCQEHEKDYKL-QGLLSQIGSE--------RTSKTIIFVETKRKADDITRSVRNKG------------ 399 (779)
Q Consensus 346 -----~i~~~~~~~~~~~k~~~L-~~ll~~i~~~--------~~~kvLVF~~s~~~ae~L~~~L~~~g------------ 399 (779)
.+.+. .......+...+ ..++..+... .+.++||||+|+..|..+++.|.+.+
T Consensus 495 ~~~~~~i~~~-~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~ 573 (1038)
T 2w00_A 495 EKKLSAAENQ-QAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKP 573 (1038)
T ss_dssp HHHHHHTCST-TTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCC
T ss_pred HHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhccccccccc
Confidence 00000 000011111122 2233332111 24689999999999999999998653
Q ss_pred CeEE-EEcCC----------C----------CH-----------------------------HHHHHHHHHHhcCCCcEE
Q psy17912 400 WAAV-AIHGN----------K----------SQ-----------------------------QERDRVLNEFRIGRASIL 429 (779)
Q Consensus 400 ~~v~-~ihg~----------~----------~~-----------------------------~eR~~il~~F~~G~~~IL 429 (779)
+.+. ++|++ + ++ .+|..+++.|++|+++||
T Consensus 574 ~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~IL 653 (1038)
T 2w00_A 574 LRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLL 653 (1038)
T ss_dssp CCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEE
T ss_pred CcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEE
Confidence 4554 45542 2 22 248899999999999999
Q ss_pred EEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCe----EEEEEcCh--HHHHHHHHhhhcc
Q psy17912 430 VSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASIL----VSHYNKSQ--QERDRVLNEFRIG 502 (779)
Q Consensus 430 VAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~----~~~~~~~~--~e~~~~l~e~~~~ 502 (779)
|+|+++.+|+|+|.+ .++.+|.|.+...|+|++||++|.+.. |.++.... .+-...+..|...
T Consensus 654 Ivvd~lltGfDiP~l----------~tlylDkpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~~~~l~~Al~~y~~~ 722 (1038)
T 2w00_A 654 IVVGMFLTGFDAPTL----------NTLFVDKNLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDLERSTIDAITLFGDK 722 (1038)
T ss_dssp EESSTTSSSCCCTTE----------EEEEEESCCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCCHHHHHHHHHHTSCS
T ss_pred EEcchHHhCcCcccc----------cEEEEccCCCccceeehhhccCcCCCCCCCcEEEEEccccHHHHHHHHHHHhCC
Confidence 999999999999986 457788999999999999999998743 55554432 2334466666443
No 74
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.93 E-value=1.4e-24 Score=252.39 Aligned_cols=130 Identities=23% Similarity=0.270 Sum_probs=114.2
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 146 MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
+|+ .|+++|..++|.+++|+ |+.++||+|||++|.+|++..... +..++|++||++||.|.++++..+.
T Consensus 76 lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l~ 144 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPVY 144 (997)
T ss_dssp TCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred hCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 788 99999999999999998 999999999999999999765543 3469999999999999999999999
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHH-HHHHHcCC------cCCC---CeeEEEEccchhhh
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRL-IDYLEQGT------INLH---RTSYLVLDEADRML 288 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~L-l~~l~~~~------~~l~---~i~~lViDEaH~l~ 288 (779)
..+++++.+++|+.+. +.+....+++|+|+||+.| .+++..+. +.++ .+.++||||||.|+
T Consensus 145 ~~lGLsv~~i~Gg~~~--~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 145 RGLGLSVGVIQHASTP--AERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HTTTCCEEECCTTCCH--HHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HhcCCeEEEEeCCCCH--HHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 9999999999999874 3344445699999999999 89887653 4577 89999999999887
No 75
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.92 E-value=8.2e-24 Score=249.61 Aligned_cols=162 Identities=19% Similarity=0.116 Sum_probs=120.2
Q ss_pred CCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecc
Q psy17912 305 PDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVET 384 (779)
Q Consensus 305 ~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s 384 (779)
...|++++|||+++..... ....+...+.... ..... +.+.....+...+...+.... ..+.++||||+|
T Consensus 379 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~--l~~p~---i~v~~~~~~~~~Ll~~l~~~~-~~~~~vlVf~~t 448 (664)
T 1c4o_A 379 RVSQVVFVSATPGPFELAH----SGRVVEQIIRPTG--LLDPL---VRVKPTENQILDLMEGIRERA-ARGERTLVTVLT 448 (664)
T ss_dssp TCSEEEEEESSCCHHHHHH----CSEEEEECSCTTC--CCCCE---EEEECSTTHHHHHHHHHHHHH-HTTCEEEEECSS
T ss_pred hcCCEEEEecCCCHHHHHh----hhCeeeeeeccCC--CCCCe---EEEecccchHHHHHHHHHHHH-hcCCEEEEEECC
Confidence 3678999999998653221 1111222222111 11111 112222233344444443322 246799999999
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCC---
Q psy17912 385 KRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKE--- 461 (779)
Q Consensus 385 ~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~--- 461 (779)
+..++.|++.|...|+.+..+||++++.+|.++++.|++|+++|||||+++++|+|+|.++ +||+++.
T Consensus 449 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~---------lVI~~d~d~~ 519 (664)
T 1c4o_A 449 VRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVS---------LVAILDADKE 519 (664)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEE---------EEEETTTTSC
T ss_pred HHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCC---------EEEEeCCccc
Confidence 9999999999999999999999999999999999999999999999999999999999988 9999997
Q ss_pred --CCCHHHHHHHhccCCCCCCeEEEEE
Q psy17912 462 --SQQKRDRVLNEFRIGRASILVSHYN 486 (779)
Q Consensus 462 --p~s~~~yiQR~GRaGR~g~~~~~~~ 486 (779)
|.+..+|+||+||+||.+ .|.++.
T Consensus 520 G~p~s~~~~iQr~GRagR~~-~G~~i~ 545 (664)
T 1c4o_A 520 GFLRSERSLIQTIGRAARNA-RGEVWL 545 (664)
T ss_dssp SGGGSHHHHHHHHGGGTTST-TCEEEE
T ss_pred CCCCCHHHHHHHHCccCcCC-CCEEEE
Confidence 999999999999999986 344443
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.90 E-value=1.1e-22 Score=239.72 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=120.9
Q ss_pred CCCceEEeeccccHHHHHHHHHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecc
Q psy17912 305 PDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVET 384 (779)
Q Consensus 305 ~~~qilllSAT~~~~v~~l~~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s 384 (779)
...|++++|||+++..... ....+...+..... .... +.+.....+...+...+.... ..+.++||||+|
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~~l--~~p~---i~v~~~~~~~~~Ll~~l~~~~-~~~~~vlVf~~t 454 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPTGL--LDPL---IDVRPIEGQIDDLIGEIQARI-ERNERVLVTTLT 454 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTTCC--CCCE---EEEECSTTHHHHHHHHHHHHH-TTTCEEEEECSS
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeecccCC--CCCe---EEEecccchHHHHHHHHHHHH-hcCCeEEEEECC
Confidence 4679999999998654222 11222222221111 1111 112222233344444443322 246799999999
Q ss_pred hhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCC---
Q psy17912 385 KRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKE--- 461 (779)
Q Consensus 385 ~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~--- 461 (779)
+..++.|++.|...|+.+..+||++++.+|..+++.|++|+++|||||+++++|+|+|.++ +||+++.
T Consensus 455 ~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~---------lVi~~d~d~~ 525 (661)
T 2d7d_A 455 KKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVS---------LVAILDADKE 525 (661)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEE---------EEEETTTTCC
T ss_pred HHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCC---------EEEEeCcccc
Confidence 9999999999999999999999999999999999999999999999999999999999988 9999997
Q ss_pred --CCCHHHHHHHhccCCCCCCeEEEEEc
Q psy17912 462 --SQQKRDRVLNEFRIGRASILVSHYNK 487 (779)
Q Consensus 462 --p~s~~~yiQR~GRaGR~g~~~~~~~~ 487 (779)
|.+..+|+||+||+||.+ .|.++..
T Consensus 526 G~p~s~~~~iQr~GRagR~~-~G~~i~~ 552 (661)
T 2d7d_A 526 GFLRSERSLIQTIGRAARNA-EGRVIMY 552 (661)
T ss_dssp TTTTSHHHHHHHHHTTTTST-TCEEEEE
T ss_pred cCCCCHHHHHHHhCcccCCC-CCEEEEE
Confidence 999999999999999984 4444433
No 77
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.88 E-value=7e-22 Score=192.08 Aligned_cols=144 Identities=26% Similarity=0.291 Sum_probs=127.0
Q ss_pred CccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHh
Q psy17912 343 ANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFR 422 (779)
Q Consensus 343 ~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~ 422 (779)
...++.+.+..+....|...|..++... ...++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|+
T Consensus 6 ~~~~i~~~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~ 82 (163)
T 2hjv_A 6 TTRNIEHAVIQVREENKFSLLKDVLMTE---NPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82 (163)
T ss_dssp CCCCEEEEEEECCGGGHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccceEEEEECChHHHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 3456888888888888998888888764 4679999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHh
Q psy17912 423 IGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 498 (779)
Q Consensus 423 ~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e 498 (779)
+|+.+|||||+++++|+|+|.++ +||+|++|.++.+|+||+||+||.|..+.++....+.....+.+
T Consensus 83 ~g~~~vlv~T~~~~~Gld~~~~~---------~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 149 (163)
T 2hjv_A 83 RGEYRYLVATDVAARGIDIENIS---------LVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAFEKRFLAD 149 (163)
T ss_dssp TTSCSEEEECGGGTTTCCCSCCS---------EEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHHHH
T ss_pred cCCCeEEEECChhhcCCchhcCC---------EEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHHHHHHHHH
Confidence 99999999999999999999998 99999999999999999999999997776665544443333333
No 78
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.88 E-value=2.5e-22 Score=200.49 Aligned_cols=149 Identities=26% Similarity=0.285 Sum_probs=115.5
Q ss_pred HHhccCcEEEecCCCCCCCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEE
Q psy17912 325 EDFLVDYVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVA 404 (779)
Q Consensus 325 ~~~l~~~~~i~i~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ 404 (779)
..++.+|..+.++... ....++.+.+..+....|...|..++.. ...++||||+++..++.+++.|...++.+..
T Consensus 9 ~~~~~~p~~i~v~~~~-~~~~~i~q~~~~~~~~~K~~~L~~~l~~----~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 9 SGVDLGTENLYFQSMG-AASLDVIQEVEYVKEEAKMVYLLECLQK----TPPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTT----SCSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred ccccCCCEEEEECCCC-CCCcCceEEEEEcChHHHHHHHHHHHHh----CCCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 3567788888887665 4556888888888887887777776654 3568999999999999999999999999999
Q ss_pred EcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEE
Q psy17912 405 IHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSH 484 (779)
Q Consensus 405 ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~ 484 (779)
+||++++.+|..+++.|++|+.+|||||+++++|+|+|.++ +||+|++|.++.+|+||+||+||.|..+.+
T Consensus 84 lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~---------~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~ 154 (191)
T 2p6n_A 84 IHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQ---------HVINYDMPEEIENYVHRIGRTGCSGNTGIA 154 (191)
T ss_dssp ECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCS---------EEEESSCCSSHHHHHHHHTTSCC---CCEE
T ss_pred EeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCC---------EEEEeCCCCCHHHHHHHhCccccCCCCcEE
Confidence 99999999999999999999999999999999999999998 999999999999999999999999876655
Q ss_pred EEc
Q psy17912 485 YNK 487 (779)
Q Consensus 485 ~~~ 487 (779)
+..
T Consensus 155 i~l 157 (191)
T 2p6n_A 155 TTF 157 (191)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 79
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.87 E-value=2e-22 Score=204.02 Aligned_cols=167 Identities=22% Similarity=0.170 Sum_probs=123.5
Q ss_pred cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHH-HHHHHHHh
Q psy17912 146 MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQ-IETVANDF 224 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q-~~~~~~~~ 224 (779)
.....|+|+|.++++.+++++++++.+|||+|||++++++++..+..... ...++++||++|+++|+.| +.+.+.++
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred cCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 45568999999999999999999999999999999999999877654321 1235689999999999999 77888887
Q ss_pred cccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC------cCCCCeeEEEEccchhhhcCCchHHHH-
Q psy17912 225 GSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT------INLHRTSYLVLDEADRMLDMGFEPQIR- 297 (779)
Q Consensus 225 ~~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~------~~l~~i~~lViDEaH~l~~~~f~~~l~- 297 (779)
... ++.+..+.|+.........+...++|+|+||+.|...+.... ..+.++++|||||||++.+.++...+.
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~ 185 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMR 185 (216)
T ss_dssp HTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-------CHHHHHH
T ss_pred hcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccCCcHHHHHH
Confidence 654 778888888877666555555568999999999999887643 567889999999999998776554443
Q ss_pred HHHhhc-------------CCCCceEEeecc
Q psy17912 298 KIIGQI-------------RPDRQVLMWSAT 315 (779)
Q Consensus 298 ~il~~l-------------~~~~qilllSAT 315 (779)
.++... .+..++++||||
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 186 HYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHhcccccccccccCCCCcceEEEeecC
Confidence 322211 167899999998
No 80
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.5e-21 Score=192.07 Aligned_cols=139 Identities=18% Similarity=0.253 Sum_probs=117.2
Q ss_pred ccceEEEEEeccccc-hhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHh
Q psy17912 344 NHNIVQIVDVCQEHE-KDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFR 422 (779)
Q Consensus 344 ~~~i~~~~~~~~~~~-k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~ 422 (779)
..++.+.+..++... |...|..++.. ...+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|+
T Consensus 5 ~~~i~q~~~~~~~~~~K~~~L~~ll~~---~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~ 81 (175)
T 2rb4_A 5 LNNIRQYYVLCEHRKDKYQALCNIYGS---ITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFR 81 (175)
T ss_dssp BCCEEEEEEECSSHHHHHHHHHHHHTT---SCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHH
T ss_pred cCCceEEEEEcCChHhHHHHHHHHHHh---CCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 457788888777654 77777776654 35689999999999999999999999999999999999999999999999
Q ss_pred cCCCcEEEEecccccccccCcccccccccceeEEEEcCCC------CCHHHHHHHhccCCCCCCeEEEEEcChHHHHH
Q psy17912 423 IGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKES------QQKRDRVLNEFRIGRASILVSHYNKSQQERDR 494 (779)
Q Consensus 423 ~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p------~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~ 494 (779)
+|+.+|||||+++++|+|+|.++ +||+|+.| .+..+|+||+||+||.|..+.++....+....
T Consensus 82 ~g~~~vLvaT~~~~~Gid~~~~~---------~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~ 150 (175)
T 2rb4_A 82 DGKEKVLITTNVCARGIDVKQVT---------IVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELP 150 (175)
T ss_dssp TTSCSEEEECCSCCTTTCCTTEE---------EEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGGGHH
T ss_pred cCCCeEEEEecchhcCCCcccCC---------EEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccchHH
Confidence 99999999999999999999988 99999999 99999999999999999877666554443333
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=1.6e-21 Score=191.38 Aligned_cols=132 Identities=20% Similarity=0.236 Sum_probs=120.3
Q ss_pred cceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy17912 345 HNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIG 424 (779)
Q Consensus 345 ~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G 424 (779)
.++.+.+..++...|...|..++... ...++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|
T Consensus 4 ~~i~q~~~~~~~~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 80 (172)
T 1t5i_A 4 HGLQQYYVKLKDNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF 80 (172)
T ss_dssp -CCEEEEEECCGGGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CCeEEEEEECChHHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC
Confidence 46778888888888988888888764 467999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcC
Q psy17912 425 RASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKS 488 (779)
Q Consensus 425 ~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~ 488 (779)
+.+|||||+++++|+|+|.++ +||+|++|.++.+|+||+||+||.|..+.++...
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~---------~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 135 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVN---------IAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 135 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCS---------EEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred CCcEEEECCchhcCcchhhCC---------EEEEECCCCCHHHHHHHhcccccCCCCcEEEEEE
Confidence 999999999999999999998 9999999999999999999999999776555543
No 82
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=193.84 Aligned_cols=137 Identities=28% Similarity=0.373 Sum_probs=110.4
Q ss_pred CCccceEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHH
Q psy17912 342 TANHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEF 421 (779)
Q Consensus 342 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F 421 (779)
....++.+.+..++..+|...|.+++... ....++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f 92 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQF 92 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHH
Confidence 34568899999998889999999988864 2468999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcCh
Q psy17912 422 RIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQ 489 (779)
Q Consensus 422 ~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~ 489 (779)
++|+.+|||||+++++|+|+|.++ +||+|++|.++.+|+||+||+||.|..+.++....
T Consensus 93 ~~g~~~vLvaT~~~~~Gldi~~~~---------~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~ 151 (185)
T 2jgn_A 93 RSGKSPILVATAVAARGLDISNVK---------HVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFN 151 (185)
T ss_dssp HHTSSSEEEEEC------CCCSBS---------EEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEEC
T ss_pred HcCCCeEEEEcChhhcCCCcccCC---------EEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEc
Confidence 999999999999999999999998 99999999999999999999999997776665443
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.86 E-value=1.8e-21 Score=189.59 Aligned_cols=130 Identities=29% Similarity=0.353 Sum_probs=112.8
Q ss_pred ceEEEEEeccccc-hhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy17912 346 NIVQIVDVCQEHE-KDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIG 424 (779)
Q Consensus 346 ~i~~~~~~~~~~~-k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G 424 (779)
++.+.+..++..+ |...|..++... ..+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~K~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g 79 (165)
T 1fuk_A 3 GIKQFYVNVEEEEYKYECLTDLYDSI---SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG 79 (165)
T ss_dssp -CEEEEEEEESGGGHHHHHHHHHHHT---TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CcEEEEEECCcchhHHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 4666677776666 888888888764 568999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEc
Q psy17912 425 RASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNK 487 (779)
Q Consensus 425 ~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~ 487 (779)
+.+|||||+++++|+|+|.++ +||+|++|.+..+|+||+||+||.|..+.++..
T Consensus 80 ~~~vlv~T~~~~~G~d~~~~~---------~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~ 133 (165)
T 1fuk_A 80 SSRILISTDLLARGIDVQQVS---------LVINYDLPANKENYIHRIGRGGRFGRKGVAINF 133 (165)
T ss_dssp SCSEEEEEGGGTTTCCCCSCS---------EEEESSCCSSGGGGGGSSCSCC-----CEEEEE
T ss_pred CCEEEEEcChhhcCCCcccCC---------EEEEeCCCCCHHHHHHHhcccccCCCCceEEEE
Confidence 999999999999999999998 999999999999999999999999866655544
No 84
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.85 E-value=6.9e-21 Score=193.30 Aligned_cols=129 Identities=24% Similarity=0.267 Sum_probs=114.0
Q ss_pred EEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEE
Q psy17912 350 IVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASIL 429 (779)
Q Consensus 350 ~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~IL 429 (779)
....+....|...|..++... ..+++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|+.+||
T Consensus 9 ~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vl 85 (212)
T 3eaq_A 9 EAVPAPVRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVL 85 (212)
T ss_dssp EEEECCTTSHHHHHHHHHHHH---CCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEE
T ss_pred eEEeCCHHHHHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEE
Confidence 344456677888888888753 46899999999999999999999999999999999999999999999999999999
Q ss_pred EEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChH
Q psy17912 430 VSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQ 490 (779)
Q Consensus 430 VAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~ 490 (779)
|||+++++|+|+|.++ +||+|+.|.+...|+||+||+||.|..|.++....+
T Consensus 86 vaT~~~~~Gidi~~v~---------~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~ 137 (212)
T 3eaq_A 86 VATDVAARGLDIPQVD---------LVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGP 137 (212)
T ss_dssp EECTTTTCSSSCCCBS---------EEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECG
T ss_pred EecChhhcCCCCccCc---------EEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEch
Confidence 9999999999999998 999999999999999999999999977765554433
No 85
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.83 E-value=2.7e-20 Score=198.39 Aligned_cols=129 Identities=23% Similarity=0.273 Sum_probs=113.4
Q ss_pred eEEEEEeccccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCC
Q psy17912 347 IVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRA 426 (779)
Q Consensus 347 i~~~~~~~~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~ 426 (779)
+.+.+..+....|...|..++... ..+++||||+++++++.+++.|...++.+..+||+|++.+|..+++.|++|+.
T Consensus 3 v~~~~i~~~~~~K~~~L~~ll~~~---~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~ 79 (300)
T 3i32_A 3 YEEEAVPAPVRGRLEVLSDLLYVA---SPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEV 79 (300)
T ss_dssp SEEEEEECCSSSHHHHHHHHHHHH---CCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSC
T ss_pred eEEEEEECCHHHHHHHHHHHHHhc---CCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCc
Confidence 456666777788888888888764 37899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEc
Q psy17912 427 SILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNK 487 (779)
Q Consensus 427 ~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~ 487 (779)
+|||||+++++|+|+|.++ +||+|+.|.+...|+||+||+||.|..|.++..
T Consensus 80 ~vLVaT~va~~Gidi~~v~---------~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l 131 (300)
T 3i32_A 80 RVLVATDVAARGLDIPQVD---------LVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLL 131 (300)
T ss_dssp CEEEECSTTTCSTTCCCCS---------EEEESSCCSSTTHHHHHHTCCC-----CEEEEE
T ss_pred eEEEEechhhcCcccccee---------EEEEcCCCCCHHHHHHHccCcCcCCCCceEEEE
Confidence 9999999999999999998 999999999999999999999999866655544
No 86
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.83 E-value=4.9e-20 Score=190.03 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=126.2
Q ss_pred CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc-
Q psy17912 147 GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG- 225 (779)
Q Consensus 147 g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~- 225 (779)
....++++|.++++.+.+|++++++||||||||+++.++++........ ..++.+++++|+++|+.|+.+.+....
T Consensus 58 ~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~~~~~~~ 134 (235)
T 3llm_A 58 ELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAERVAFERG 134 (235)
T ss_dssp HTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHHHHHTTT
T ss_pred hcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHHHHHHhc
Confidence 3445789999999999999999999999999999999998887665321 234589999999999999988876543
Q ss_pred ccCCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhh-hcCCchH-HHHHHHhhc
Q psy17912 226 SATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRM-LDMGFEP-QIRKIIGQI 303 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l-~~~~f~~-~l~~il~~l 303 (779)
...+..+........ .....+++|+|+||++|++++.. .++++++|||||||++ ++.+|.. .+..++..
T Consensus 135 ~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~- 205 (235)
T 3llm_A 135 EEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINTDFLLVVLRDVVQA- 205 (235)
T ss_dssp CCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHH-
T ss_pred cccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcchHHHHHHHHHHHhh-
Confidence 333444433221110 11123478999999999999876 4889999999999985 7777764 44444444
Q ss_pred CCCCceEEeeccccHHHHHHHHHhccCc
Q psy17912 304 RPDRQVLMWSATWPKEVQKLAEDFLVDY 331 (779)
Q Consensus 304 ~~~~qilllSAT~~~~v~~l~~~~l~~~ 331 (779)
.++.|+++||||++.+. +.+.+...+
T Consensus 206 ~~~~~~il~SAT~~~~~--~~~~~~~~p 231 (235)
T 3llm_A 206 YPEVRIVLMSATIDTSM--FCEYFFNCP 231 (235)
T ss_dssp CTTSEEEEEECSSCCHH--HHHHTTSCC
T ss_pred CCCCeEEEEecCCCHHH--HHHHcCCCC
Confidence 46899999999999875 444443333
No 87
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.82 E-value=2.4e-20 Score=197.74 Aligned_cols=155 Identities=17% Similarity=0.123 Sum_probs=127.8
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
-+|+|+|.++++.++++.+.++++|||+|||+++++++...+... ..++||++|+++|+.|+.+.++++....
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~-------~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY-------EGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC-------SSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC-------CCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 379999999999999888899999999999999988887766541 2379999999999999999999997766
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCc
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 308 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~q 308 (779)
...+..++++..... ......+|+|+||+.+... ....+.++++|||||||++.. ..+..++..+.+..+
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~~~~~ 254 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLATG----KSISSIISGLNNCMF 254 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCTTCCE
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCCc----ccHHHHHHHhhcCCe
Confidence 778888888876543 2224579999999877543 223477899999999999874 478888888878999
Q ss_pred eEEeeccccHHH
Q psy17912 309 VLMWSATWPKEV 320 (779)
Q Consensus 309 illlSAT~~~~v 320 (779)
+++||||++...
T Consensus 255 ~l~lSATp~~~~ 266 (282)
T 1rif_A 255 KFGLSGSLRDGK 266 (282)
T ss_dssp EEEECSSCCTTS
T ss_pred EEEEeCCCCCcc
Confidence 999999997653
No 88
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.81 E-value=3.2e-19 Score=206.09 Aligned_cols=128 Identities=19% Similarity=0.176 Sum_probs=88.0
Q ss_pred cCCCCCCHHHHHHHHH----HhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHH
Q psy17912 146 MGFQAPTAIQAQGWPI----ALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVA 221 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~----il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 221 (779)
.|| .|+|+|.+++.. +.+++++++.+|||+|||++|++|++.. +++++|++||++|+.|+.+.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 356 899999998654 4588999999999999999999998753 358999999999999999888
Q ss_pred HHhcccCCceEEEEeCCCCC--------h------------------------hhH---------------HHhhcCCeE
Q psy17912 222 NDFGSATATRVACVFGGAPK--------G------------------------PQV---------------KALQTGAEI 254 (779)
Q Consensus 222 ~~~~~~~~l~v~~~~gg~~~--------~------------------------~~~---------------~~l~~~~~I 254 (779)
..+ ++++..+.|.... . +.+ +.....++|
T Consensus 72 ~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adi 147 (540)
T 2vl7_A 72 KLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDV 147 (540)
T ss_dssp GGG----TCCEEEC---------------------------------------------------------CTTGGGCSE
T ss_pred Hhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCE
Confidence 774 4444444332110 0 000 111234799
Q ss_pred EEeChHHHHHHHHcCCc-------CCCCeeEEEEccchhhhc
Q psy17912 255 VIATPGRLIDYLEQGTI-------NLHRTSYLVLDEADRMLD 289 (779)
Q Consensus 255 iV~Tpe~Ll~~l~~~~~-------~l~~i~~lViDEaH~l~~ 289 (779)
||+|+..|++....+.+ .+...++|||||||.+.+
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~~ 189 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLLE 189 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGGG
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHHH
Confidence 99999999875543221 246778999999998843
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.69 E-value=2e-21 Score=190.16 Aligned_cols=141 Identities=17% Similarity=0.223 Sum_probs=119.6
Q ss_pred ceEEEEEeccc-cchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcC
Q psy17912 346 NIVQIVDVCQE-HEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIG 424 (779)
Q Consensus 346 ~i~~~~~~~~~-~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G 424 (779)
++.+.+..++. ..|...|..++.. ....++||||+++..++.+++.|...++.+..+||+|++.+|..+++.|++|
T Consensus 3 ~i~~~~~~~~~~~~k~~~l~~ll~~---~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g 79 (170)
T 2yjt_D 3 KIHQWYYRADDLEHKTALLVHLLKQ---PEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG 79 (170)
Confidence 34455555555 6677777777764 2467899999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHh
Q psy17912 425 RASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 498 (779)
Q Consensus 425 ~~~ILVAT~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e 498 (779)
+.+|||||+++++|+|+|.++ +||+|++|.++.+|+||+||+||.|..+.++..........+.+
T Consensus 80 ~~~vLvaT~~~~~Gid~~~~~---------~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~ 144 (170)
T 2yjt_D 80 RVNVLVATDVAARGIDIPDVS---------HVFNFDMPRSGDTYLHRIGRTARAGRKGTAISLVEAHDHLLLGK 144 (170)
Confidence 999999999999999999998 99999999999999999999999997776666554443333333
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.78 E-value=2.7e-17 Score=190.53 Aligned_cols=271 Identities=13% Similarity=0.074 Sum_probs=176.8
Q ss_pred CCCHHHHHHHHH----HhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 150 APTAIQAQGWPI----ALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 150 ~p~~~Q~~~i~~----il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
+|+|+|.+++.. +..++++++.+|||+|||++|++|++. .+++++|++||++|+.|+.+++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~-----------~~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLE-----------VKPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHH-----------HCSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHh-----------CCCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 689999998764 457899999999999999999999997 14689999999999999999999988
Q ss_pred ccCCceEEEEeCCCCC---------------------------------hhhH------------------HHhhcCCeE
Q psy17912 226 SATATRVACVFGGAPK---------------------------------GPQV------------------KALQTGAEI 254 (779)
Q Consensus 226 ~~~~l~v~~~~gg~~~---------------------------------~~~~------------------~~l~~~~~I 254 (779)
...++++..+.|.... .... +.....++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7778888877763210 0111 222346899
Q ss_pred EEeChHHHHHHHHcCCcCC-CCeeEEEEccchhhhcCCc-----------------------------------------
Q psy17912 255 VIATPGRLIDYLEQGTINL-HRTSYLVLDEADRMLDMGF----------------------------------------- 292 (779)
Q Consensus 255 iV~Tpe~Ll~~l~~~~~~l-~~i~~lViDEaH~l~~~~f----------------------------------------- 292 (779)
||+|+..|++...+..+.+ ....+|||||||.+.+ .-
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d-~~~~~s~~ls~~~l~~~~~~l~~~~~~~~l~~l~~~l~~~~~~ 230 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK-VNELEERSLSEITIQMAIKQSKSEESRRILSKLLNQLREVVLP 230 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG-GGGGGCEEEEHHHHHHHHHHCSCHHHHHHHHHHHHHHTTSCCS
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH-HHHhhceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999998765544333 4678999999998876 20
Q ss_pred --------------hHHHHHH----------------------------H----------------------------hh
Q psy17912 293 --------------EPQIRKI----------------------------I----------------------------GQ 302 (779)
Q Consensus 293 --------------~~~l~~i----------------------------l----------------------------~~ 302 (779)
...+..+ + ..
T Consensus 231 ~~~~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~pl~~~~~l~~ 310 (551)
T 3crv_A 231 DEKYIKVENVPKLSKEELEILADDYEDIRKDSLKQGKVNKIHIGSILRFFSLLSIGSFIPFSYSKRLVIKNPEISYYLNL 310 (551)
T ss_dssp CSSCEECSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCHHHHHHHHHHHHHHSSCEEEEETTEEEEECCCTHHHHGG
T ss_pred cccccccccChHHHHHHHHHHHHHHHHHHHhhhhcCCcccchHHHHHHHHHHHhccCCeEeccCCEEEEEECCHHHHHHH
Confidence 0000000 0 00
Q ss_pred cCCC-CceEEeeccccHHHHHHHHHhccC-cEE-----EecCCCCCCCccceEEEEEe-cccc------chhHHHHHHHH
Q psy17912 303 IRPD-RQVLMWSATWPKEVQKLAEDFLVD-YVQ-----LNIGSLNPTANHNIVQIVDV-CQEH------EKDYKLQGLLS 368 (779)
Q Consensus 303 l~~~-~qilllSAT~~~~v~~l~~~~l~~-~~~-----i~i~~~~~~~~~~i~~~~~~-~~~~------~k~~~L~~ll~ 368 (779)
+... ..+|++|||+.+ ...+...+..+ +.. ..++.. ...+..-.+.. .+.. .-...+...+.
T Consensus 311 ~~~~~~svIltSaTL~~-~~~~~~~lGl~~~~~~~~~~~~~~sp---f~~~~~l~v~~~~~~~~~~r~~~~~~~l~~~i~ 386 (551)
T 3crv_A 311 LNDNELSIILMSGTLPP-REYMEKVWGIKRNMLYLDVEREIQKR---VSGSYECYIGVDVTSKYDMRSDNMWKRYADYLL 386 (551)
T ss_dssp GGCTTCEEEEEESSCCC-HHHHHHTSCCCSCEEEEEHHHHTTSC---CSCEEEEEEECSCCCCTTTCCHHHHHHHHHHHH
T ss_pred HhccCceEEEEeeCCCc-HHHHHHHhCCCCccccccceeecCCc---CCCceEEEEeCCCCCccccCCHHHHHHHHHHHH
Confidence 0122 678999999976 34444443333 222 111111 12222211111 1110 11234455555
Q ss_pred HhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEe--cccccccccC
Q psy17912 369 QIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQ--YNKSQQERDR 442 (779)
Q Consensus 369 ~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT--~v~~~GIDip 442 (779)
.+....++.+|||++|....+.+++. .+.++..-..+++ +..+++.|+...--||+|| ..+.+|||+|
T Consensus 387 ~l~~~~~g~~lvlF~Sy~~l~~v~~~---~~~~v~~q~~~~~---~~~~~~~~~~~~~~vl~~v~gg~~~EGiD~~ 456 (551)
T 3crv_A 387 KIYFQAKANVLVVFPSYEIMDRVMSR---ISLPKYVESEDSS---VEDLYSAISANNKVLIGSVGKGKLAEGIELR 456 (551)
T ss_dssp HHHHHCSSEEEEEESCHHHHHHHHTT---CCSSEEECCSSCC---HHHHHHHTTSSSSCEEEEESSCCSCCSSCCE
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHh---cCCcEEEcCCCCC---HHHHHHHHHhcCCeEEEEEecceeccccccc
Confidence 54444678999999999999999973 3444444333455 4557778854445899999 5999999998
No 91
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.71 E-value=6.4e-17 Score=166.88 Aligned_cols=139 Identities=21% Similarity=0.134 Sum_probs=110.3
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
..|+++|.++++.+++++++++++|||+|||.+++.++... +.++||++|+++|+.|+.+.+.++
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 47999999999999999999999999999999988876642 346999999999999999988874
Q ss_pred Cce-EEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCC
Q psy17912 229 ATR-VACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDR 307 (779)
Q Consensus 229 ~l~-v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~ 307 (779)
++. +..+.|+... ..+|+|+||+.+...... ....+++|||||||++.+..+ ..++..+ +..
T Consensus 157 ~~~~v~~~~g~~~~---------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~~~----~~i~~~~-~~~ 219 (237)
T 2fz4_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAESY----VQIAQMS-IAP 219 (237)
T ss_dssp CGGGEEEESSSCBC---------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTTTH----HHHHHTC-CCS
T ss_pred CCCeEEEEeCCCCC---------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCChHH----HHHHHhc-cCC
Confidence 667 7777776532 468999999998766542 124589999999999876544 3455554 467
Q ss_pred ceEEeeccccHH
Q psy17912 308 QVLMWSATWPKE 319 (779)
Q Consensus 308 qilllSAT~~~~ 319 (779)
++++||||++..
T Consensus 220 ~~l~LSATp~r~ 231 (237)
T 2fz4_A 220 FRLGLTATFERE 231 (237)
T ss_dssp EEEEEEESCC--
T ss_pred EEEEEecCCCCC
Confidence 899999998754
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.66 E-value=3.1e-15 Score=174.98 Aligned_cols=81 Identities=20% Similarity=0.163 Sum_probs=67.5
Q ss_pred CCCHHHHHHHH----HHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 150 APTAIQAQGWP----IALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 150 ~p~~~Q~~~i~----~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
+|+|.|.+.+. .+.+++++++.||||+|||++|++|++.++... +++++|++||++|+.|+.+.+..+.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~-------~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER-------KLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH-------TCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc-------CCeEEEECCCHHHHHHHHHHHHHHh
Confidence 68999999985 456899999999999999999999999987652 4689999999999999999998887
Q ss_pred ccCCceEEEEeC
Q psy17912 226 SATATRVACVFG 237 (779)
Q Consensus 226 ~~~~l~v~~~~g 237 (779)
...++++..+.|
T Consensus 76 ~~~~~~~~~l~g 87 (620)
T 4a15_A 76 STMKIRAIPMQG 87 (620)
T ss_dssp HHSCCCEEECCC
T ss_pred hccCeEEEEEEC
Confidence 655666666554
No 93
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.56 E-value=4.2e-15 Score=156.20 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=95.0
Q ss_pred cccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhC-CCeEEEEcCCCCHHHHHHHHHHHhcC-CCc-EEEE
Q psy17912 355 QEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNK-GWAAVAIHGNKSQQERDRVLNEFRIG-RAS-ILVS 431 (779)
Q Consensus 355 ~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~-g~~v~~ihg~~~~~eR~~il~~F~~G-~~~-ILVA 431 (779)
....|...|..++..+.. .+.++||||+++..++.|++.|... |+.+..+||++++.+|.++++.|+++ ..+ +|++
T Consensus 93 ~~s~K~~~L~~ll~~~~~-~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALD-EGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp TTCHHHHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccCHHHHHHHHHHHHHHh-CCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 456788888888887643 4789999999999999999999885 99999999999999999999999998 677 7999
Q ss_pred ecccccccccCcccccccccceeEEEEcCCCCCHHHHHHHhccCCCCCCe
Q psy17912 432 QYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRVLNEFRIGRASIL 481 (779)
Q Consensus 432 T~v~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~ 481 (779)
|+++++|||++.++ .||+||+|+++..|.||+||++|.|..
T Consensus 172 t~~~g~Glnl~~a~---------~VI~~d~~wnp~~~~Q~~gR~~R~Gq~ 212 (271)
T 1z5z_A 172 VKAGGFGINLTSAN---------RVIHFDRWWNPAVEDQATDRVYRIGQT 212 (271)
T ss_dssp CCTTCCCCCCTTCS---------EEEECSCCSCTTTC-------------
T ss_pred hhhhcCCcCcccCC---------EEEEECCCCChhHHHHHHHhccccCCC
Confidence 99999999999998 999999999999999999999999843
No 94
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.88 E-value=4.1e-08 Score=110.02 Aligned_cols=215 Identities=13% Similarity=0.172 Sum_probs=123.5
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCcccccccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIG 450 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~ 450 (779)
..++||.+|+++.+.++++.+++. ++.+..++|+.+..++...+. ...+|+|+|+ ++-+|.-.-......
T Consensus 129 ~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~----~~~~Ivv~Tp--~~l~~~l~~~~~~l~ 202 (434)
T 2db3_A 129 RPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECIT----RGCHVVIATP--GRLLDFVDRTFITFE 202 (434)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHT----TCCSEEEECH--HHHHHHHHTTSCCCT
T ss_pred CccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhh----cCCCEEEECh--HHHHHHHHhCCcccc
Confidence 468999999999999999988863 577889999999876655443 4689999996 222221100001122
Q ss_pred cceeEEEEc-C--CCCCHHHHHHHhc-cCC-CCCCeEEEEEcChHHH-HHHHHhhhccccceeeccccccHHHHHHhhhh
Q psy17912 451 RASILVSQY-K--ESQQKRDRVLNEF-RIG-RASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQQERDRVLNE 524 (779)
Q Consensus 451 ~~~~~VI~y-~--~p~s~~~yiQR~G-RaG-R~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~ 524 (779)
....+|++= + .......-+.++- ... +.......++...+.. ......+......+.+......
T Consensus 203 ~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~---------- 272 (434)
T 2db3_A 203 DTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGA---------- 272 (434)
T ss_dssp TCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCC----------
T ss_pred cCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEecccccc----------
Confidence 223455441 0 0111112222221 111 2333444444443332 2233333221111111100000
Q ss_pred hcccccchhhhcc-cccHHHHHH---HHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHh
Q psy17912 525 FRIGRASILVSHY-NKSQQERDR---VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVL 600 (779)
Q Consensus 525 ~~~~~~~~~~~~~-~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (779)
...+....+ -....+.+. ++.+.. ...|+|++|++.++++.+.|++.|+++.++ ||+.+|+||+.++
T Consensus 273 ----~~~i~~~~~~~~~~~k~~~l~~~l~~~~--~~~lVF~~t~~~a~~l~~~L~~~~~~~~~l---hg~~~~~~R~~~l 343 (434)
T 2db3_A 273 ----CSDVKQTIYEVNKYAKRSKLIEILSEQA--DGTIVFVETKRGADFLASFLSEKEFPTTSI---HGDRLQSQREQAL 343 (434)
T ss_dssp ----CTTEEEEEEECCGGGHHHHHHHHHHHCC--TTEEEECSSHHHHHHHHHHHHHTTCCEEEE---STTSCHHHHHHHH
T ss_pred ----ccccceEEEEeCcHHHHHHHHHHHHhCC--CCEEEEEeCcHHHHHHHHHHHhCCCCEEEE---eCCCCHHHHHHHH
Confidence 000000000 011223333 333332 239999999999999999999999999999 9999999999999
Q ss_pred hhhhcCCceeEEec
Q psy17912 601 NEFRIGRASILVSH 614 (779)
Q Consensus 601 ~~~~~~~~~~~~~~ 614 (779)
++|+.|+..|||+-
T Consensus 344 ~~F~~g~~~vLvaT 357 (434)
T 2db3_A 344 RDFKNGSMKVLIAT 357 (434)
T ss_dssp HHHHTSSCSEEEEC
T ss_pred HHHHcCCCcEEEEc
Confidence 99999999999975
No 95
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.83 E-value=4.2e-08 Score=112.57 Aligned_cols=218 Identities=13% Similarity=0.204 Sum_probs=136.1
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccccccee
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASI 454 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~~~~~~ 454 (779)
.+.+||.+|++..+....+.|...++.+..+|++.+..++..++..+..|..+||++|+ ++-......+.+.......
T Consensus 65 ~g~~lvi~P~~aL~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tp--e~l~~~~~~~~l~~~~~~~ 142 (523)
T 1oyw_A 65 NGLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAP--ERLMLDNFLEHLAHWNPVL 142 (523)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECH--HHHTSTTHHHHHTTSCEEE
T ss_pred CCCEEEECChHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECH--HHHhChHHHHHHhhCCCCE
Confidence 47899999999999999999999999999999999999999999999999999999997 2222111111111112223
Q ss_pred EEEEc-CCC----CCHHHHHHHhccCC--CCCCeEEEEEcChHH--HHHHHHhhhccccceeeccccccHHHHHHhhhhh
Q psy17912 455 LVSQY-KES----QQKRDRVLNEFRIG--RASILVSHYNKSQQE--RDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 525 (779)
Q Consensus 455 ~VI~y-~~p----~s~~~yiQR~GRaG--R~g~~~~~~~~~~~e--~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~ 525 (779)
+||+= +.- .+...-+.++++.- ..+.....++..... ...++..+......+....++... + .+
T Consensus 143 vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~-----l--~~ 215 (523)
T 1oyw_A 143 LAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN-----I--RY 215 (523)
T ss_dssp EEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTT-----E--EE
T ss_pred EEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCc-----e--EE
Confidence 33331 100 00111111222111 112333444433222 233444444433333333222110 0 00
Q ss_pred cccccchhhhcccccHHHHHHHHHHhh--hcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhh
Q psy17912 526 RIGRASILVSHYNKSQQERDRVLNEFR--IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 603 (779)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (779)
.+... ....+.+++-.+ .+.+.|+|++|.+.++++...|+..|++++.+ ||+.+++||++++++|
T Consensus 216 -------~v~~~---~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~---h~~l~~~~R~~~~~~f 282 (523)
T 1oyw_A 216 -------MLMEK---FKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAY---HAGLENNVRADVQEKF 282 (523)
T ss_dssp -------EEEEC---SSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEE---CTTSCHHHHHHHHHHH
T ss_pred -------EEEeC---CCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEe---cCCCCHHHHHHHHHHH
Confidence 00001 112233333333 56789999999999999999999999998888 9999999999999999
Q ss_pred hcCCceeEEec
Q psy17912 604 RIGRASILVSH 614 (779)
Q Consensus 604 ~~~~~~~~~~~ 614 (779)
+.|+..|||+-
T Consensus 283 ~~g~~~vlVaT 293 (523)
T 1oyw_A 283 QRDDLQIVVAT 293 (523)
T ss_dssp HTTSCSEEEEC
T ss_pred HcCCCeEEEEe
Confidence 99999999984
No 96
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.63 E-value=4.5e-08 Score=114.20 Aligned_cols=146 Identities=22% Similarity=0.267 Sum_probs=90.4
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCChh--HHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC
Q psy17912 152 TAIQAQGWPIALSGCDLVAIAKTGSGKT--LGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229 (779)
Q Consensus 152 ~~~Q~~~i~~il~g~dvii~apTGsGKT--l~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 229 (779)
++.|+++++.++.++.+++.|++|+||| ++++++.+..+.. ..+.++++++||..+|.++.+.+......++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 4466666654321 1356899999999999999887766544333
Q ss_pred ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCce
Q psy17912 230 TRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQV 309 (779)
Q Consensus 230 l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qi 309 (779)
+..... .... .....+ ..++-.+|+.. . +.........+++||||||+ |++ ...+..++..+++..|+
T Consensus 225 l~~~~~-~~~~--~~~~Ti---h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~---~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 225 LTDEQK-KRIP--EDASTL---HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID---LPMMSRLIDALPDHARV 292 (608)
T ss_dssp CCSCCC-CSCS--CCCBTT---TSCC-------------CTTSCCSCSEEEECSGG-GCB---HHHHHHHHHTCCTTCEE
T ss_pred CCHHHH-hccc--hhhhhh---HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC---HHHHHHHHHhCCCCCEE
Confidence 221000 0000 000000 11222233221 1 11122223378999999999 444 45678888888888888
Q ss_pred EEeecc
Q psy17912 310 LMWSAT 315 (779)
Q Consensus 310 lllSAT 315 (779)
+++.-.
T Consensus 293 iLvGD~ 298 (608)
T 1w36_D 293 IFLGDR 298 (608)
T ss_dssp EEEECT
T ss_pred EEEcch
Confidence 887644
No 97
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.62 E-value=3.4e-07 Score=106.42 Aligned_cols=217 Identities=9% Similarity=0.122 Sum_probs=134.0
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHH--hcCCCcEEEEecc-ccc---ccccCcccccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEF--RIGRASILVSQYN-KSQ---QERDRVLNEFR 448 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F--~~G~~~ILVAT~v-~~~---GIDip~v~~~~ 448 (779)
.+.+||.+|++..++..++.|...|+.+..++|+++..++..++..+ ..+..+||++|+- +.. -++... +...
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~-~~~~ 162 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLE-KAYE 162 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHH-HHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHH-hhhh
Confidence 56899999999999999999999999999999999999999999888 5789999999982 111 011000 0011
Q ss_pred cccceeEEEEc-C--------CCCCHH---HHHHHhccCCCCCCeEEEEEcChHHH--HHHHHhhhccccceeecccccc
Q psy17912 449 IGRASILVSQY-K--------ESQQKR---DRVLNEFRIGRASILVSHYNKSQQER--DRVLNEFRIGRASILVSHYNKS 514 (779)
Q Consensus 449 ~~~~~~~VI~y-~--------~p~s~~---~yiQR~GRaGR~g~~~~~~~~~~~e~--~~~l~e~~~~~~~il~~~~~~~ 514 (779)
......+||+= + .-..+. .+.+.. .+....+++...... ..+...+......++...++..
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~-----~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~ 237 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQF-----PNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRP 237 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHC-----TTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCT
T ss_pred ccCCcEEEEECcccccccccccHHHHHHHHHHHHhC-----CCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCc
Confidence 11222344441 1 000110 111111 123344444333222 2233333332222222211111
Q ss_pred HHHHHHhhhhhcccccchhhhccccc-HHHHHHHHHHhh---hcceEEEEecccchhhHHHHHHhhcCccceeEeeeccc
Q psy17912 515 QQERDRVLNEFRIGRASILVSHYNKS-QQERDRVLNEFR---IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYN 590 (779)
Q Consensus 515 ~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (779)
. + .+.+...... ....+.+++-++ .+.+.|+|++|.+.++++...|+..|++++.+ ||+
T Consensus 238 n-----------l---~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~---h~~ 300 (591)
T 2v1x_A 238 N-----------L---YYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAY---HAN 300 (591)
T ss_dssp T-----------E---EEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEE---CTT
T ss_pred c-----------c---EEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEe---cCC
Confidence 0 0 0001111111 222333444333 57789999999999999999999999999999 999
Q ss_pred hhhhhHhhHhhhhhcCCceeEEec
Q psy17912 591 KSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
.+++||+.++++|+.|+..|||+-
T Consensus 301 l~~~~R~~~~~~F~~g~~~VlVAT 324 (591)
T 2v1x_A 301 LEPEDKTTVHRKWSANEIQVVVAT 324 (591)
T ss_dssp SCHHHHHHHHHHHHTTSSSEEEEC
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEe
Confidence 999999999999999999999884
No 98
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=98.55 E-value=1.6e-06 Score=94.93 Aligned_cols=216 Identities=16% Similarity=0.154 Sum_probs=124.6
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc-c-----cccccCc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNK-----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK-S-----QQERDRV 443 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~-----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~-~-----~GIDip~ 443 (779)
..++||.||++..++++++.+.+. ++.+..++|+.+..+....+ ..+..+|+|+|.-. . ..++...
T Consensus 76 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 152 (391)
T 1xti_A 76 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKNCPHIVVGTPGRILALARNKSLNLKH 152 (391)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHH---HHSCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHH---hcCCCCEEEECHHHHHHHHHcCCccccc
Confidence 468999999999999999988764 78899999999877665544 44678999999621 1 1122233
Q ss_pred ccccccccceeEEEEc----CCCCCHHHHHHHhccCCCCCCeEEEEEcChHH-HHHHHHhhhccccceeeccccccHHHH
Q psy17912 444 LNEFRIGRASILVSQY----KESQQKRDRVLNEFRIGRASILVSHYNKSQQE-RDRVLNEFRIGRASILVSHYNKSQQER 518 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y----~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e-~~~~l~e~~~~~~~il~~~~~~~~~~~ 518 (779)
++ .+|++= .........+.++-+.-.......+++..... ....+..+......+.........
T Consensus 153 ~~--------~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 221 (391)
T 1xti_A 153 IK--------HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLT--- 221 (391)
T ss_dssp CS--------EEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCC---
T ss_pred cC--------EEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccC---
Confidence 32 233321 01112222222222222223333444433222 122333332211111111000000
Q ss_pred HHhhhhhcccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhh
Q psy17912 519 DRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDR 598 (779)
Q Consensus 519 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (779)
.. .+... +..............+++.. .+...|+|+++.+.++++.+.|++.|++...+ ||+-++.||+.
T Consensus 222 ---~~--~~~~~-~~~~~~~~~~~~l~~~l~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~---~~~~~~~~r~~ 291 (391)
T 1xti_A 222 ---LH--GLQQY-YVKLKDNEKNRKLFDLLDVL-EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI---HRGMPQEERLS 291 (391)
T ss_dssp ---CT--TCEEE-EEECCGGGHHHHHHHHHHHS-CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEE---CTTSCHHHHHH
T ss_pred ---cc--cceEE-EEEcCchhHHHHHHHHHHhc-CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEE---eCCCCHHHHHH
Confidence 00 00000 00000000111222344443 45679999999999999999999999999988 99999999999
Q ss_pred HhhhhhcCCceeEEec
Q psy17912 599 VLNEFRIGRASILVSH 614 (779)
Q Consensus 599 ~~~~~~~~~~~~~~~~ 614 (779)
++++|+.|+..|||+.
T Consensus 292 ~~~~f~~~~~~vlv~T 307 (391)
T 1xti_A 292 RYQQFKDFQRRILVAT 307 (391)
T ss_dssp HHHHHHTTCCSEEEES
T ss_pred HHHHHhcCCCcEEEEC
Confidence 9999999999999986
No 99
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.51 E-value=1.2e-06 Score=96.79 Aligned_cols=214 Identities=15% Similarity=0.151 Sum_probs=122.1
Q ss_pred CcEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-c----ccc-cccCccc
Q psy17912 376 SKTIIFVETKRKADDITRSVRN----KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYN-K----SQQ-ERDRVLN 445 (779)
Q Consensus 376 ~kvLVF~~s~~~ae~L~~~L~~----~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v-~----~~G-IDip~v~ 445 (779)
.++||.+|++..+.++++.+++ .++.+..++|+.+..+....+ . ...+|+|+|.- + ..+ ++...++
T Consensus 102 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~-~~~~I~v~Tp~~l~~~l~~~~~~~~~~~ 177 (417)
T 2i4i_A 102 PISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDL---E-RGCHLLVATPGRLVDMMERGKIGLDFCK 177 (417)
T ss_dssp CSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHH---T-TCCSEEEECHHHHHHHHHTTSBCCTTCC
T ss_pred ccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHh---h-CCCCEEEEChHHHHHHHHcCCcChhhCc
Confidence 5799999999999999998875 367899999999876654433 2 35799999971 1 111 1222222
Q ss_pred ccccccceeEEEEc-CC--CCCHHHHHHHhccC-CC---CCCeEEEEEcChHHH-HHHHHhhhccccceeeccccccHHH
Q psy17912 446 EFRIGRASILVSQY-KE--SQQKRDRVLNEFRI-GR---ASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQQE 517 (779)
Q Consensus 446 ~~~~~~~~~~VI~y-~~--p~s~~~yiQR~GRa-GR---~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~~~ 517 (779)
.+|++= +. ..+....+.++-.. .. ......+++...... ...+..+......+......
T Consensus 178 --------~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~----- 244 (417)
T 2i4i_A 178 --------YLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVG----- 244 (417)
T ss_dssp --------EEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC--------
T ss_pred --------EEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCC-----
Confidence 233320 00 01111222222221 11 122233333333222 22333322111111110000
Q ss_pred HHHhhhhhcccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHh
Q psy17912 518 RDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERD 597 (779)
Q Consensus 518 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (779)
.... .+-..-+.+. .........+++++...+...|+|++|++.++++.+.|++.|++...+ ||+-+++||.
T Consensus 245 --~~~~--~i~~~~~~~~-~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~---h~~~~~~~r~ 316 (417)
T 2i4i_A 245 --STSE--NITQKVVWVE-ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSI---HGDRSQRDRE 316 (417)
T ss_dssp ---CCS--SEEEEEEECC-GGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEE---CTTSCHHHHH
T ss_pred --CCcc--CceEEEEEec-cHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEe---cCCCCHHHHH
Confidence 0000 0000000000 001112233456666567789999999999999999999999999888 9999999999
Q ss_pred hHhhhhhcCCceeEEec
Q psy17912 598 RVLNEFRIGRASILVSH 614 (779)
Q Consensus 598 ~~~~~~~~~~~~~~~~~ 614 (779)
.++++|+.|+..|||+.
T Consensus 317 ~~~~~f~~g~~~vlvaT 333 (417)
T 2i4i_A 317 EALHQFRSGKSPILVAT 333 (417)
T ss_dssp HHHHHHHHTSSCEEEEC
T ss_pred HHHHHHHcCCCCEEEEC
Confidence 99999999999999975
No 100
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=98.47 E-value=2.4e-06 Score=94.36 Aligned_cols=216 Identities=17% Similarity=0.222 Sum_probs=124.2
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-----ccccc-cccCc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY-----NKSQQ-ERDRV 443 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~-----v~~~G-IDip~ 443 (779)
...++||.||++..+.++++.+.+. ++.+..++|+....+....+. ...+|+|+|. .+..+ ++...
T Consensus 104 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~ivv~Tp~~l~~~l~~~~~~~~~ 179 (410)
T 2j0s_A 104 RETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLD----YGQHVVAGTPGRVFDMIRRRSLRTRA 179 (410)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHH----HCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhh----cCCCEEEcCHHHHHHHHHhCCccHhh
Confidence 4678999999999999999988763 578889999998877655443 2568999995 22222 22222
Q ss_pred ccccccccceeEEEEc-C--CCCCHHHHHHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeeccccccHHHHH
Q psy17912 444 LNEFRIGRASILVSQY-K--ESQQKRDRVLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQQERD 519 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y-~--~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~~~~~ 519 (779)
+ ..+|++= + ........+..+-+.-........++...... ...+..+......+.+......
T Consensus 180 ~--------~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 246 (410)
T 2j0s_A 180 I--------KMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELT----- 246 (410)
T ss_dssp C--------CEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCS-----
T ss_pred e--------eEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCcccc-----
Confidence 2 2344431 0 11122222222222222333344444433222 2222222221111111100000
Q ss_pred HhhhhhcccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhH
Q psy17912 520 RVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRV 599 (779)
Q Consensus 520 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (779)
.. .+-..-+.+...+........+++.... ...|+|++|++.++++.+.|++.|++...+ ||+.++.||+.+
T Consensus 247 --~~--~~~~~~~~~~~~~~k~~~l~~~~~~~~~-~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~---h~~~~~~~r~~~ 318 (410)
T 2j0s_A 247 --LE--GIKQFFVAVEREEWKFDTLCDLYDTLTI-TQAVIFCNTKRKVDWLTEKMREANFTVSSM---HGDMPQKERESI 318 (410)
T ss_dssp --CT--TEEEEEEEESSTTHHHHHHHHHHHHHTS-SEEEEECSSHHHHHHHHHHHHHTTCCCEEE---CTTSCHHHHHHH
T ss_pred --CC--CceEEEEEeCcHHhHHHHHHHHHHhcCC-CcEEEEEcCHHHHHHHHHHHHhCCCceEEe---eCCCCHHHHHHH
Confidence 00 0000000000000011122334444433 478999999999999999999999999999 999999999999
Q ss_pred hhhhhcCCceeEEec
Q psy17912 600 LNEFRIGRASILVSH 614 (779)
Q Consensus 600 ~~~~~~~~~~~~~~~ 614 (779)
+++|+.|+..|||+.
T Consensus 319 ~~~f~~g~~~vlv~T 333 (410)
T 2j0s_A 319 MKEFRSGASRVLIST 333 (410)
T ss_dssp HHHHHHTSSCEEEEC
T ss_pred HHHHHCCCCCEEEEC
Confidence 999999999999985
No 101
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=98.40 E-value=7.8e-07 Score=106.06 Aligned_cols=210 Identities=18% Similarity=0.181 Sum_probs=123.9
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc-ccccccCccccccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK-SQQERDRVLNEFRI 449 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~-~~GIDip~v~~~~~ 449 (779)
+.+++|.+|++.-+.+.++.+++. ++.+..+||+++..+|..+++.+.+|+.+|+|+|... ...+.+..+.
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~---- 492 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLG---- 492 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCC----
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCc----
Confidence 578999999999999888887653 7899999999999999999999999999999999832 2233444433
Q ss_pred ccceeEEEEcCCCCCHHHHHHHhccCCCC--CCeEEEEEcChHHHHHHHHhhhccccceeeccccccHHHHHHhhhhhcc
Q psy17912 450 GRASILVSQYKESQQKRDRVLNEFRIGRA--SILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRI 527 (779)
Q Consensus 450 ~~~~~~VI~y~~p~s~~~yiQR~GRaGR~--g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 527 (779)
.+|++=..-. .+.||. ..-.. .......+.....+...+..+..-..+++. . ...
T Consensus 493 ----lVVIDEaHr~---g~~qr~-~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~-~--------------~p~ 549 (780)
T 1gm5_A 493 ----LVIIDEQHRF---GVKQRE-ALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVID-E--------------MPP 549 (780)
T ss_dssp ----EEEEESCCCC--------C-CCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEEC-C--------------CCS
T ss_pred ----eEEecccchh---hHHHHH-HHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeee-c--------------cCC
Confidence 3444421111 122221 11111 122333333321111111111111111110 0 001
Q ss_pred cccchhhhc--ccccHHHHHHHHHHhhhcceEEEEeccc--------chhhHHHHHHhh---cCccceeEeeeccchhhh
Q psy17912 528 GRASILVSH--YNKSQQERDRVLNEFRIGRASILVSHYN--------KSQQERDRVLNE---FRIGRASILVSHYNKSQQ 594 (779)
Q Consensus 528 ~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 594 (779)
++..+.... .+....-.+.+.++...|...++||++. +.++++...|++ .+++...+ ||+.+++
T Consensus 550 ~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~l---HG~m~~~ 626 (780)
T 1gm5_A 550 GRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLM---HGRLSQE 626 (780)
T ss_dssp SCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCC---CSSSCCS
T ss_pred CCcceEEEEeccchHHHHHHHHHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEE---eCCCCHH
Confidence 111111111 1111222344555666788889999854 567888889988 35555555 9999999
Q ss_pred hHhhHhhhhhcCCceeEEec
Q psy17912 595 ERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~ 614 (779)
||+.|+++|+.|+..|||+-
T Consensus 627 eR~~v~~~F~~G~~~ILVaT 646 (780)
T 1gm5_A 627 EKDRVMLEFAEGRYDILVST 646 (780)
T ss_dssp CSHHHHHHHTTTSSSBCCCS
T ss_pred HHHHHHHHHHCCCCeEEEEC
Confidence 99999999999999999874
No 102
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=98.39 E-value=3.3e-06 Score=105.21 Aligned_cols=211 Identities=20% Similarity=0.265 Sum_probs=131.9
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec-ccccccccCcccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY-NKSQQERDRVLNEFR 448 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~-v~~~GIDip~v~~~~ 448 (779)
.+.+++|.|||+..+.+.++.+.+. ++.+..+++..+..++..+++.+.+|+.+|+|+|. .+...+.+..+.
T Consensus 651 ~g~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~--- 727 (1151)
T 2eyq_A 651 NHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG--- 727 (1151)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEE---
T ss_pred hCCeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccc---
Confidence 4679999999999999999888743 57899999999999999999999999999999996 333334444333
Q ss_pred cccceeEEEEcCCCCCH--HHHHHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeeccccccHHHHHHhhhhh
Q psy17912 449 IGRASILVSQYKESQQK--RDRVLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 525 (779)
Q Consensus 449 ~~~~~~~VI~y~~p~s~--~~yiQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~ 525 (779)
.+||+=..-... ...+... +........+.....+ ...... .....+++...
T Consensus 728 -----lvIiDEaH~~g~~~~~~l~~l----~~~~~vl~lSATp~p~~l~~~~~-~~~~~~~i~~~--------------- 782 (1151)
T 2eyq_A 728 -----LLIVDEEHRFGVRHKERIKAM----RANVDILTLTATPIPRTLNMAMS-GMRDLSIIATP--------------- 782 (1151)
T ss_dssp -----EEEEESGGGSCHHHHHHHHHH----HTTSEEEEEESSCCCHHHHHHHT-TTSEEEECCCC---------------
T ss_pred -----eEEEechHhcChHHHHHHHHh----cCCCCEEEEcCCCChhhHHHHHh-cCCCceEEecC---------------
Confidence 344441111111 1111111 1122233333322111 111110 01011111000
Q ss_pred cccccch--hhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhh
Q psy17912 526 RIGRASI--LVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 603 (779)
Q Consensus 526 ~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (779)
...+..+ .+..+ ....-++.++.+...|...++|+++.+.++++.+.|++. +|.+.+.+.||+.++.||+.|+++|
T Consensus 783 ~~~r~~i~~~~~~~-~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~-~p~~~v~~lhg~~~~~eR~~il~~F 860 (1151)
T 2eyq_A 783 PARRLAVKTFVREY-DSMVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL-VPEARIAIGHGQMRERELERVMNDF 860 (1151)
T ss_dssp CCBCBCEEEEEEEC-CHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHH-CTTSCEEECCSSCCHHHHHHHHHHH
T ss_pred CCCccccEEEEecC-CHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHh-CCCCeEEEEeCCCCHHHHHHHHHHH
Confidence 0000000 01111 123446678888888999999999999999999999987 2333444559999999999999999
Q ss_pred hcCCceeEEec
Q psy17912 604 RIGRASILVSH 614 (779)
Q Consensus 604 ~~~~~~~~~~~ 614 (779)
+.|+..|||+-
T Consensus 861 ~~g~~~VLVaT 871 (1151)
T 2eyq_A 861 HHQRFNVLVCT 871 (1151)
T ss_dssp HTTSCCEEEES
T ss_pred HcCCCcEEEEC
Confidence 99999998873
No 103
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=98.39 E-value=7.8e-06 Score=88.30 Aligned_cols=221 Identities=13% Similarity=0.166 Sum_probs=122.9
Q ss_pred HHHHHhccCCCCcEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-ccccc
Q psy17912 365 GLLSQIGSERTSKTIIFVETKRKADDITRSVRN----KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYN-KSQQE 439 (779)
Q Consensus 365 ~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~----~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v-~~~GI 439 (779)
.++..+......++||.||++..++++++.+.+ .++.+..++|+....+....+. ..+|+|+|.- +..-+
T Consensus 64 ~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~ 138 (367)
T 1hv8_A 64 PLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHI 138 (367)
T ss_dssp HHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHH
T ss_pred HHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHH
Confidence 344444334567899999999999999998876 3678899999988766554443 5789999962 11111
Q ss_pred ccCcccccccccceeEEEEc-C--CCCCHHHHHHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeeccccccH
Q psy17912 440 RDRVLNEFRIGRASILVSQY-K--ESQQKRDRVLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQ 515 (779)
Q Consensus 440 Dip~v~~~~~~~~~~~VI~y-~--~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~ 515 (779)
.... ........+|++= + ...+....+..+-+.-.......+++...... ...+..+.. ....+......
T Consensus 139 ~~~~---~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~-~~~~~~~~~~~-- 212 (367)
T 1hv8_A 139 NRGT---LNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMG-DYSFIKAKINA-- 212 (367)
T ss_dssp HTTC---SCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCC-SEEEEECCSSS--
T ss_pred HcCC---cccccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcC-CCeEEEecCCC--
Confidence 1000 0111222344431 0 01111111111111111222223333322221 222222211 11111100000
Q ss_pred HHHHHhhhhhcccccchhhhccccc-HHHHHHHHHHh-hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhh
Q psy17912 516 QERDRVLNEFRIGRASILVSHYNKS-QQERDRVLNEF-RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQ 593 (779)
Q Consensus 516 ~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (779)
.+........ ....+.+++.. ..+...|+|++|.+.++++.+.|++.|++...+ ||+-++
T Consensus 213 ---------------~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~---~~~~~~ 274 (367)
T 1hv8_A 213 ---------------NIEQSYVEVNENERFEALCRLLKNKEFYGLVFCKTKRDTKELASMLRDIGFKAGAI---HGDLSQ 274 (367)
T ss_dssp ---------------SSEEEEEECCGGGHHHHHHHHHCSTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEE---CSSSCH
T ss_pred ---------------CceEEEEEeChHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEe---eCCCCH
Confidence 0000000111 11222222222 345578999999999999999999999999888 999999
Q ss_pred hhHhhHhhhhhcCCceeEEec
Q psy17912 594 QERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~ 614 (779)
.+|+.++++|+.|+..|||+.
T Consensus 275 ~~r~~~~~~f~~~~~~vlv~T 295 (367)
T 1hv8_A 275 SQREKVIRLFKQKKIRILIAT 295 (367)
T ss_dssp HHHHHHHHHHHTTSSSEEEEC
T ss_pred HHHHHHHHHHHcCCCeEEEEC
Confidence 999999999999999999986
No 104
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=98.29 E-value=3.7e-05 Score=83.85 Aligned_cols=208 Identities=15% Similarity=0.178 Sum_probs=118.2
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc------ccccccCc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK------SQQERDRV 443 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~------~~GIDip~ 443 (779)
...++||.||++..+.++++.+++. ++.+..++++..... .....+|+|+|.-. ...++...
T Consensus 74 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~ 145 (395)
T 3pey_A 74 ASPQAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQK 145 (395)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTT
T ss_pred CCccEEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCccccc
Confidence 4568999999999999999998863 567777777654221 12367899999621 11122333
Q ss_pred ccccccccceeEEEEc----CCCCCHHHHHHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeeccccccHHHH
Q psy17912 444 LNEFRIGRASILVSQY----KESQQKRDRVLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQQER 518 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y----~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~~~~ 518 (779)
++ .+|++= .........+.++-+.-+......+++...... ......+......+......
T Consensus 146 ~~--------~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~------ 211 (395)
T 3pey_A 146 IK--------IFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNE------ 211 (395)
T ss_dssp CC--------EEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGG------
T ss_pred CC--------EEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccc------
Confidence 32 344431 011223333333333333333444444433332 22222222111111100000
Q ss_pred HHhhhhhcccccchhhhccc-ccHHHHHHHHHHh---hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhh
Q psy17912 519 DRVLNEFRIGRASILVSHYN-KSQQERDRVLNEF---RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQ 594 (779)
Q Consensus 519 ~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (779)
.....+...... ....++...+.+. ..+...|+|+++++.++++...|++.|++...+ ||+-+++
T Consensus 212 --------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~ 280 (395)
T 3pey_A 212 --------VNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSIL---HGDLQTQ 280 (395)
T ss_dssp --------CSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEE---CTTSCHH
T ss_pred --------cccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEe---CCCCCHH
Confidence 000000000000 1112222222222 235679999999999999999999999999988 9999999
Q ss_pred hHhhHhhhhhcCCceeEEec
Q psy17912 595 ERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~ 614 (779)
||+.++++|+.|+..|||+-
T Consensus 281 ~r~~~~~~f~~g~~~vlv~T 300 (395)
T 3pey_A 281 ERDRLIDDFREGRSKVLITT 300 (395)
T ss_dssp HHHHHHHHHHTTSCCEEEEC
T ss_pred HHHHHHHHHHCCCCCEEEEC
Confidence 99999999999999999984
No 105
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=98.27 E-value=7.5e-06 Score=90.68 Aligned_cols=205 Identities=12% Similarity=0.216 Sum_probs=119.4
Q ss_pred CCCCcEEEEecchhHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc-cc---cccCccc
Q psy17912 373 ERTSKTIIFVETKRKADDITRSVRN---KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKS-QQ---ERDRVLN 445 (779)
Q Consensus 373 ~~~~kvLVF~~s~~~ae~L~~~L~~---~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~-~G---IDip~v~ 445 (779)
..+.++||.+|++..+.++++.++. .++.+..+||+.+..++....+.+..|..+|+|+|+-.- .- ++...++
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhcccccc
Confidence 3568899999999999999999998 588999999999999999999999999999999997211 11 1222222
Q ss_pred ccccccceeEEEEcCCCCCH-------HHHHHHhccCCCCCCeEEEEEcChHH-HHHHHHhhh-----------ccccce
Q psy17912 446 EFRIGRASILVSQYKESQQK-------RDRVLNEFRIGRASILVSHYNKSQQE-RDRVLNEFR-----------IGRASI 506 (779)
Q Consensus 446 ~~~~~~~~~~VI~y~~p~s~-------~~yiQR~GRaGR~g~~~~~~~~~~~e-~~~~l~e~~-----------~~~~~i 506 (779)
.+|++ .-..+ ..++...|- .++ -..++..+. .....+
T Consensus 142 --------~iViD--EaH~~~~~~~~~d~~l~~~~~--------------~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i 197 (414)
T 3oiy_A 142 --------FVFVD--DVDAVLKASRNIDTLLMMVGI--------------PEEIIRKAFSTIKQGKIYERPKNLKPGILV 197 (414)
T ss_dssp --------EEEES--CHHHHHHCHHHHHHHHHHTTC--------------CHHHHHHHHHHHHHTCCCCCCTTCCCCEEE
T ss_pred --------EEEEe--ChHhhhhccchhhhHHhhcCC--------------cHHHHHHHHHhcccchhhhhcccCCCceEE
Confidence 23332 11000 000000000 000 001111110 111111
Q ss_pred eeccc-cccH---HHHHHhhhhhcccccchh---hhc--cc-ccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhh
Q psy17912 507 LVSHY-NKSQ---QERDRVLNEFRIGRASIL---VSH--YN-KSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNE 576 (779)
Q Consensus 507 l~~~~-~~~~---~~~~~~l~~~~~~~~~~~---~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (779)
+.+-. .+.. ......+. +.+...... +.+ .. ...+..-.++++ .+...|+|++|++.++++.+.|+.
T Consensus 198 ~~SAT~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~--~~~~~lVF~~~~~~~~~l~~~L~~ 274 (414)
T 3oiy_A 198 VSSATAKPRGIRPLLFRDLLN-FTVGRLVSVARNITHVRISSRSKEKLVELLEI--FRDGILIFAQTEEEGKELYEYLKR 274 (414)
T ss_dssp ESSCCSSCCSSTTHHHHHHHS-CCSSCCCCCCCSEEEEEESSCCHHHHHHHHHH--HCSSEEEEESSHHHHHHHHHHHHH
T ss_pred EEecCCCcchhHHHHHHHhhc-cCcCccccccccchheeeccCHHHHHHHHHHH--cCCCEEEEECCHHHHHHHHHHHHH
Confidence 11111 0000 00111110 111111100 000 11 112233445555 457899999999999999999999
Q ss_pred cCccce-eEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 577 FRIGRA-SILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 577 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
.|+++. .+ ||+ +|+ +++|+.|+..|||+
T Consensus 275 ~~~~~~~~~---h~~----~r~--~~~f~~g~~~vLva 303 (414)
T 3oiy_A 275 FKFNVGETW---SEF----EKN--FEDFKVGKINILIG 303 (414)
T ss_dssp TTCCEEESS---SCH----HHH--HHHHHTTSCSEEEE
T ss_pred cCCceehhh---cCc----chH--HHHHhCCCCeEEEE
Confidence 999988 77 996 555 99999999999999
No 106
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=98.23 E-value=1.2e-05 Score=88.51 Aligned_cols=226 Identities=15% Similarity=0.224 Sum_probs=119.5
Q ss_pred HHHHHHHhccC-CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec----
Q psy17912 363 LQGLLSQIGSE-RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY---- 433 (779)
Q Consensus 363 L~~ll~~i~~~-~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~---- 433 (779)
+..++..+... ...++||.+|++..+.++++.++.. +..+..++|+...... .+.+..+..+|+|+|.
T Consensus 95 ~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~iiv~T~~~l~ 171 (414)
T 3eiq_A 95 AISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAE---VQKLQMEAPHIIVGTPGRVF 171 (414)
T ss_dssp HHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHH---HHHHTTTCCSEEEECHHHHH
T ss_pred HHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHH---HHHHhcCCCCEEEECHHHHH
Confidence 44444444322 4678999999999999999988764 5778888888775544 3445557889999995
Q ss_pred -ccccc-cccCcccccccccceeEEEEcCCCC-----CHHHHHHHhccCCCCCCeEEEEEcChH-HHHHHHHhhhccccc
Q psy17912 434 -NKSQQ-ERDRVLNEFRIGRASILVSQYKESQ-----QKRDRVLNEFRIGRASILVSHYNKSQQ-ERDRVLNEFRIGRAS 505 (779)
Q Consensus 434 -v~~~G-IDip~v~~~~~~~~~~~VI~y~~p~-----s~~~yiQR~GRaGR~g~~~~~~~~~~~-e~~~~l~e~~~~~~~ 505 (779)
.+..+ ++...++ .+|++ .-. +....+..+-+.-+.......++.... +....+..+......
T Consensus 172 ~~l~~~~~~~~~~~--------~vViD--Eah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~ 241 (414)
T 3eiq_A 172 DMLNRRYLSPKYIK--------MFVLD--EADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIR 241 (414)
T ss_dssp HHHHHTSSCSTTCC--------EEEEC--SHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEE
T ss_pred HHHHcCCcccccCc--------EEEEE--CHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEE
Confidence 11111 1222222 23332 111 111111222122222233333333322 222333333222111
Q ss_pred eeeccccccHHHHHHhhhhhcccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEe
Q psy17912 506 ILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASIL 585 (779)
Q Consensus 506 il~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (779)
+......... . .+-...+.....+........+++... +...|+|+++++.++++.+.|+..|++...+
T Consensus 242 ~~~~~~~~~~-------~--~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~- 310 (414)
T 3eiq_A 242 ILVKKEELTL-------E--GIRQFYINVEREEWKLDTLCDLYETLT-ITQAVIFINTRRKVDWLTEKMHARDFTVSAM- 310 (414)
T ss_dssp ECCCCCCCCT-------T--SCCEEEEECSSSTTHHHHHHHHHHSSC-CSSCEEECSCHHHHHHHHHHHHTTTCCCEEC-
T ss_pred EEecCCccCC-------C--CceEEEEEeChHHhHHHHHHHHHHhCC-CCcEEEEeCCHHHHHHHHHHHHhcCCeEEEe-
Confidence 1111000000 0 000000000000001112222333333 3468999999999999999999999999988
Q ss_pred eeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 586 VSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
||+.++.+|+.++++|+.|+..|||+.
T Consensus 311 --h~~~~~~~r~~~~~~f~~g~~~vlv~T 337 (414)
T 3eiq_A 311 --HGDMDQKERDVIMREFRSGSSRVLITT 337 (414)
T ss_dssp -----CHHHHHHHHHHHHSCC---CEEEC
T ss_pred --cCCCCHHHHHHHHHHHHcCCCcEEEEC
Confidence 999999999999999999999999985
No 107
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=98.23 E-value=9.1e-06 Score=93.89 Aligned_cols=62 Identities=18% Similarity=0.173 Sum_probs=56.5
Q ss_pred HhhhcceEEEEecccchhhHHHHHHhhc---CccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 550 EFRIGRASILVSHYNKSQQERDRVLNEF---RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...+...|+|++|.+.++++.+.|++. |++++.+ ||+.+|++|..++++|+.|+..|||+-
T Consensus 335 ~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~---h~~~~~~~R~~~~~~f~~g~~~vLvaT 399 (563)
T 3i5x_A 335 ERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEF---HGKITQNKRTSLVKRFKKDESGILVCT 399 (563)
T ss_dssp HTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEE---STTSCHHHHHHHHHHHHHCSSEEEEEC
T ss_pred hcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEe---cCCCCHHHHHHHHHHHhcCCCCEEEEc
Confidence 3345778999999999999999999987 8998888 999999999999999999999999873
No 108
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=98.20 E-value=3.8e-05 Score=84.25 Aligned_cols=214 Identities=14% Similarity=0.149 Sum_probs=121.4
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----cccc-cccCc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYN-----KSQQ-ERDRV 443 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v-----~~~G-IDip~ 443 (779)
...++||.||++..+.++++.++.. ++.+..++|+....+....+ .+..+|+|+|.- +..+ .+...
T Consensus 88 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~~~~~~~~~ 163 (400)
T 1s2m_A 88 NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRL----NETVHILVGTPGRVLDLASRKVADLSD 163 (400)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHT----TSCCSEEEECHHHHHHHHHTTCSCCTT
T ss_pred CCccEEEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHh----cCCCCEEEEchHHHHHHHHhCCccccc
Confidence 4568999999999999999888753 67899999998865543322 357899999952 2222 22232
Q ss_pred ccccccccceeEEEEc-C--CCCCHHHHHHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeeccccccHHHHH
Q psy17912 444 LNEFRIGRASILVSQY-K--ESQQKRDRVLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQQERD 519 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y-~--~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~~~~~ 519 (779)
+. .+|++= + ...+....+..+-+.-.......+++...+.. ...+..+......+... ...
T Consensus 164 ~~--------~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~--~~~----- 228 (400)
T 1s2m_A 164 CS--------LFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLM--EEL----- 228 (400)
T ss_dssp CC--------EEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCC--SSC-----
T ss_pred CC--------EEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEec--ccc-----
Confidence 22 344431 1 11112222333322222233334444332222 22222221111111000 000
Q ss_pred HhhhhhcccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhH
Q psy17912 520 RVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRV 599 (779)
Q Consensus 520 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (779)
... .+......+. ..........+++.. .+...|+|+++.+.++++.+.|++.|+++..+ ||+.+++||+.+
T Consensus 229 -~~~--~~~~~~~~~~-~~~k~~~l~~~~~~~-~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~---~~~~~~~~r~~~ 300 (400)
T 1s2m_A 229 -TLK--GITQYYAFVE-ERQKLHCLNTLFSKL-QINQAIIFCNSTNRVELLAKKITDLGYSCYYS---HARMKQQERNKV 300 (400)
T ss_dssp -BCT--TEEEEEEECC-GGGHHHHHHHHHHHS-CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEE---CTTSCHHHHHHH
T ss_pred -ccC--CceeEEEEec-hhhHHHHHHHHHhhc-CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEe---cCCCCHHHHHHH
Confidence 000 0000000000 000011223344443 34579999999999999999999999999888 999999999999
Q ss_pred hhhhhcCCceeEEec
Q psy17912 600 LNEFRIGRASILVSH 614 (779)
Q Consensus 600 ~~~~~~~~~~~~~~~ 614 (779)
++.|+.|+..|||+.
T Consensus 301 ~~~f~~g~~~vLv~T 315 (400)
T 1s2m_A 301 FHEFRQGKVRTLVCS 315 (400)
T ss_dssp HHHHHTTSSSEEEES
T ss_pred HHHHhcCCCcEEEEc
Confidence 999999999999986
No 109
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=98.19 E-value=1.2e-05 Score=93.32 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=55.6
Q ss_pred hhcceEEEEecccchhhHHHHHHhhc---CccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 552 RIGRASILVSHYNKSQQERDRVLNEF---RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
..+...|+|++|.+.++++...|++. |++++.+ ||+.+|.+|..++++|+.|+..|||+-
T Consensus 286 ~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~---hg~~~~~~R~~~~~~F~~g~~~vLVaT 348 (579)
T 3sqw_A 286 DSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEF---HGKITQNKRTSLVKRFKKDESGILVCT 348 (579)
T ss_dssp TTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEE---STTSCHHHHHHHHHHHHHCSSEEEEEC
T ss_pred CCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEe---cCCCCHHHHHHHHHHhhcCCCeEEEEc
Confidence 44778999999999999999999988 8888888 999999999999999999999999873
No 110
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=98.13 E-value=5.2e-05 Score=83.31 Aligned_cols=227 Identities=11% Similarity=0.104 Sum_probs=122.2
Q ss_pred HHHHHHHhccC-CCCcEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc
Q psy17912 363 LQGLLSQIGSE-RTSKTIIFVETKRKADDITRSVRNK-----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKS 436 (779)
Q Consensus 363 L~~ll~~i~~~-~~~kvLVF~~s~~~ae~L~~~L~~~-----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~ 436 (779)
+..++..+... ...++||.+|++..+.++++.+++. +..+....++...... .....+|+|+|.-.
T Consensus 82 ~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~ivv~T~~~- 153 (412)
T 3fht_A 82 VLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGT- 153 (412)
T ss_dssp HHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT-------CCCCCSEEEECHHH-
T ss_pred HHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh-------hcCCCCEEEECchH-
Confidence 34445544332 3458999999999999998888763 5677777776543211 13467899999621
Q ss_pred cccccC-cccccccccceeEEEEc-C---CCCCHHHHHHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeecc
Q psy17912 437 QQERDR-VLNEFRIGRASILVSQY-K---ESQQKRDRVLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSH 510 (779)
Q Consensus 437 ~GIDip-~v~~~~~~~~~~~VI~y-~---~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~ 510 (779)
-++.. ....+.......+|++= + ...........+-+.-+.+....+++...... ...+..+......+....
T Consensus 154 -l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 232 (412)
T 3fht_A 154 -VLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKR 232 (412)
T ss_dssp -HHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCG
T ss_pred -HHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeecc
Confidence 11100 00001112222344441 1 11122222223333333334444444433332 223333322111111100
Q ss_pred ccccHHHHHHhhhhhcccccchhhhcccccHHHHHH---HHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeee
Q psy17912 511 YNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDR---VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 587 (779)
Q Consensus 511 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (779)
... ... .+-...+. ........+. ++... .+...|+|++|.+.++++...|+..|++...+
T Consensus 233 ~~~-------~~~--~~~~~~~~---~~~~~~~~~~l~~~~~~~-~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~--- 296 (412)
T 3fht_A 233 EEE-------TLD--TIKQYYVL---CSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALL--- 296 (412)
T ss_dssp GGS-------SCT--TEEEEEEE---CSSHHHHHHHHHHHHHHH-SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEE---
T ss_pred ccc-------ccc--CceEEEEE---cCChHHHHHHHHHHHhhc-CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEe---
Confidence 000 000 00000000 0011112222 23332 34579999999999999999999999999988
Q ss_pred ccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 588 HYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
||+-+++||+.++++|+.|+..|||+-
T Consensus 297 ~~~~~~~~r~~~~~~f~~g~~~vlv~T 323 (412)
T 3fht_A 297 SGEMMVEQRAAVIERFREGKEKVLVTT 323 (412)
T ss_dssp CTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred cCCCCHHHHHHHHHHHHCCCCcEEEEc
Confidence 999999999999999999999999985
No 111
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=98.13 E-value=8e-06 Score=89.34 Aligned_cols=230 Identities=18% Similarity=0.195 Sum_probs=66.4
Q ss_pred HHHHHHHhccC-CCCcEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc-c
Q psy17912 363 LQGLLSQIGSE-RTSKTIIFVETKRKADDITRSVRN----KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK-S 436 (779)
Q Consensus 363 L~~ll~~i~~~-~~~kvLVF~~s~~~ae~L~~~L~~----~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~-~ 436 (779)
+..++..+... ...++||.||++..+.++++.+.+ .++.+..++|+.+..+....+. ..+|+|+|.-. .
T Consensus 76 ~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~ 150 (394)
T 1fuu_A 76 SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVF 150 (394)
T ss_dssp HHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHH
T ss_pred HHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHH
Confidence 33344443322 456899999999999999888875 3678999999999877665554 46899999521 1
Q ss_pred cccccCcccccccccceeEEEEc-C---CCCCHHHHHHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeeccc
Q psy17912 437 QQERDRVLNEFRIGRASILVSQY-K---ESQQKRDRVLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSHY 511 (779)
Q Consensus 437 ~GIDip~v~~~~~~~~~~~VI~y-~---~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~ 511 (779)
.-+.... ........+|++= + ...-...+.+.. +.-.......+.+...... ...+..+......+.....
T Consensus 151 ~~~~~~~---~~~~~~~~vIiDEah~~~~~~~~~~~~~~~-~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~ 226 (394)
T 1fuu_A 151 DNIQRRR---FRTDKIKMFILDEADEMLSSGFKEQIYQIF-TLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 226 (394)
T ss_dssp HHHHTTS---SCCTTCCEEEEETHHHHHHTTCHHHHHHHH-HHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC-
T ss_pred HHHHhCC---cchhhCcEEEEEChHHhhCCCcHHHHHHHH-HhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCc
Confidence 1111000 1111222344431 0 011111111111 1112223334444333222 2333333322222221110
Q ss_pred cccHHHHHHhhhhhcccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccch
Q psy17912 512 NKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNK 591 (779)
Q Consensus 512 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (779)
.. ....+...+ +.+...+........+++... +...|+|++|.+.++++.+.|++.|++...+ ||+-
T Consensus 227 ~~---~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~-~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~---~~~~ 293 (394)
T 1fuu_A 227 EL---TLEGIKQFY------VNVEEEEYKYECLTDLYDSIS-VTQAVIFCNTRRKVEELTTKLRNDKFTVSAI---YSDL 293 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cc---cCCCceEEE------EEcCchhhHHHHHHHHHhcCC-CCcEEEEECCHHHHHHHHHHHHHcCCeEEEe---eCCC
Confidence 00 000000000 000000000111222333332 3468999999999999999999999998888 9999
Q ss_pred hhhhHhhHhhhhhcCCceeEEec
Q psy17912 592 SQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
++.||+.++++|+.|+..|||+-
T Consensus 294 ~~~~r~~~~~~f~~~~~~vlv~T 316 (394)
T 1fuu_A 294 PQQERDTIMKEFRSGSSRILIST 316 (394)
T ss_dssp -----------------------
T ss_pred CHHHHHHHHHHHHCCCCcEEEEC
Confidence 99999999999999999999975
No 112
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=98.07 E-value=2e-05 Score=97.61 Aligned_cols=196 Identities=12% Similarity=0.216 Sum_probs=118.9
Q ss_pred CCCCcEEEEecchhHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccccccc------ccCc
Q psy17912 373 ERTSKTIIFVETKRKADDITRSVRN---KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQE------RDRV 443 (779)
Q Consensus 373 ~~~~kvLVF~~s~~~ae~L~~~L~~---~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GI------Dip~ 443 (779)
..+.++||.+|++..|.++++.|++ .++.+..+||+++..+|...++.+..|..+|||+|+ ++-+ +...
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp--~rL~~~l~~l~~~~ 196 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFST--QFVSKNREKLSQKR 196 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEH--HHHHHSHHHHHTSC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECH--HHHHHHHHhhcccC
Confidence 3567899999999999999999998 567999999999999999999999999999999997 2222 2233
Q ss_pred ccccccccceeEEEEcCC---CC----------------C-HHHHHHHhc------cCCC-CCCeEEEEEcC-hHHH--H
Q psy17912 444 LNEFRIGRASILVSQYKE---SQ----------------Q-KRDRVLNEF------RIGR-ASILVSHYNKS-QQER--D 493 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y~~---p~----------------s-~~~yiQR~G------RaGR-~g~~~~~~~~~-~~e~--~ 493 (779)
++ .+|++ .. +. . +...+.... +..+ ......+++.. .++. .
T Consensus 197 l~--------~lViD-EaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~ 267 (1104)
T 4ddu_A 197 FD--------FVFVD-DVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRP 267 (1104)
T ss_dssp CS--------EEEES-CHHHHTTSSHHHHHHHHTSSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTT
T ss_pred cC--------EEEEe-CCCccccccccchhhhHhcCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHH
Confidence 33 23332 11 10 0 111111110 0000 11111222211 0100 0
Q ss_pred HHHHhhhccccceeeccccccHHHHHHhhhhhcccccchhhh---c--cc-ccHHHHHHHHHHhhhcceEEEEecccchh
Q psy17912 494 RVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS---H--YN-KSQQERDRVLNEFRIGRASILVSHYNKSQ 567 (779)
Q Consensus 494 ~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~--~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 567 (779)
..+..+ + .+.+........ + .. ......-.+|.. .+...|+|++|.+.+
T Consensus 268 ~~~~~~----------------------l-~i~v~~~~~~~~~i~~~~~~~~k~~~L~~ll~~--~~~~~LVF~~s~~~a 322 (1104)
T 4ddu_A 268 LLFRDL----------------------L-NFTVGRLVSVARNITHVRISSRSKEKLVELLEI--FRDGILIFAQTEEEG 322 (1104)
T ss_dssp HHHHHH----------------------T-CCCCCBCCCCCCCEEEEEESCCCHHHHHHHHHH--HCSSEEEEESSSHHH
T ss_pred HHhhcc----------------------e-eEEeccCCCCcCCceeEEEecCHHHHHHHHHHh--cCCCEEEEECcHHHH
Confidence 011111 0 011111110000 0 00 112233345555 457799999999999
Q ss_pred hHHHHHHhhcCccce-eEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 568 QERDRVLNEFRIGRA-SILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 568 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
+++...|+..|+++. .+ ||+ |.. +++|+.|+..|||+
T Consensus 323 ~~l~~~L~~~g~~~~~~l---hg~-----rr~-l~~F~~G~~~VLVa 360 (1104)
T 4ddu_A 323 KELYEYLKRFKFNVGETW---SEF-----EKN-FEDFKVGKINILIG 360 (1104)
T ss_dssp HHHHHHHHHTTCCEEESS---SSH-----HHH-HHHHHHTSCSEEEE
T ss_pred HHHHHHHHhCCCCeeeEe---cCc-----HHH-HHHHHCCCCCEEEE
Confidence 999999999999998 77 993 444 99999999999999
No 113
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=98.05 E-value=0.00011 Score=82.13 Aligned_cols=65 Identities=22% Similarity=0.294 Sum_probs=56.2
Q ss_pred HHHHh---hhcceEEEEecccchhhHHHHHHhhcCccceeEeeecc--------chhhhhHhhHhhhhhcCCceeEEec
Q psy17912 547 VLNEF---RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHY--------NKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 547 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+|.++ ..+.+.|+|+++.+.++.+.+.|++.|++.+.+ || +.++.||..++++|+.|+..|||+.
T Consensus 351 ~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~---~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T 426 (494)
T 1wp9_A 351 IIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRF---VGQASKENDRGLSQREQKLILDEFARGEFNVLVAT 426 (494)
T ss_dssp HHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEE---CCSSCC-------CCHHHHHHHHHHHTSCSEEEEC
T ss_pred HHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEE---eccccccccccCCHHHHHHHHHHHhcCCceEEEEC
Confidence 44444 357889999999999999999999999999988 99 9999999999999999999999995
No 114
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=98.03 E-value=1e-05 Score=91.45 Aligned_cols=211 Identities=11% Similarity=0.108 Sum_probs=59.7
Q ss_pred CcEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccc-------cccccCc
Q psy17912 376 SKTIIFVETKRKADDITRSVRNK-----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKS-------QQERDRV 443 (779)
Q Consensus 376 ~kvLVF~~s~~~ae~L~~~L~~~-----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~-------~GIDip~ 443 (779)
.++||.+|++..+.++++.+... ++.+....++...... .....+|+|+|+-.- ..++...
T Consensus 163 ~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~ 235 (479)
T 3fmp_B 163 PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (479)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCCCCGGG
T ss_pred CcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc-------ccCCCCEEEECchHHHHHHHhcCCcCccc
Confidence 48999999999999998877652 4567766665442111 123568999997221 1233333
Q ss_pred ccccccccceeEEEEc-C---CCCCHHHHHHHhccCCCCCCeEEEEEcChHHHH-HHHHhhhccccceeeccccccHHHH
Q psy17912 444 LNEFRIGRASILVSQY-K---ESQQKRDRVLNEFRIGRASILVSHYNKSQQERD-RVLNEFRIGRASILVSHYNKSQQER 518 (779)
Q Consensus 444 v~~~~~~~~~~~VI~y-~---~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~-~~l~e~~~~~~~il~~~~~~~~~~~ 518 (779)
+. .+|++= + ..........++-+.-..+.....++....... .....+......+..... ....
T Consensus 236 ~~--------~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~---~~~~ 304 (479)
T 3fmp_B 236 IK--------VFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKRE---EETL 304 (479)
T ss_dssp CC--------EEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------
T ss_pred CC--------EEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEecccc---ccCc
Confidence 33 233331 1 112333344444455444555555555443332 333333222111111111 0000
Q ss_pred HHhhhhhcccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhh
Q psy17912 519 DRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDR 598 (779)
Q Consensus 519 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (779)
+.+...+ +.+...+......-+++... .+...|+||+|.+.++.+...|+..|++.+.+ ||+.+|++|+.
T Consensus 305 ~~~~~~~------~~~~~~~~~~~~l~~~~~~~-~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~l---h~~~~~~~R~~ 374 (479)
T 3fmp_B 305 DTIKQYY------VLCSSRDEKFQALCNLYGAI-TIAQAMIFCHTRKTASWLAAELSKEGHQVALL---SGEMMVEQRAA 374 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEE------EEeCCHHHHHHHHHHHHhhc-cCCceEEEeCcHHHHHHHHHHHHhCCccEEEe---cCCCCHHHHHH
Confidence 0000000 00000000000111122222 23468999999999999999999999999888 99999999999
Q ss_pred HhhhhhcCCceeEEec
Q psy17912 599 VLNEFRIGRASILVSH 614 (779)
Q Consensus 599 ~~~~~~~~~~~~~~~~ 614 (779)
++++|+.|+..|||+-
T Consensus 375 ~~~~f~~g~~~iLv~T 390 (479)
T 3fmp_B 375 VIERFREGKEKVLVTT 390 (479)
T ss_dssp ----------------
T ss_pred HHHHHHcCCCcEEEEc
Confidence 9999999999999874
No 115
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=98.01 E-value=0.0001 Score=86.99 Aligned_cols=58 Identities=9% Similarity=0.172 Sum_probs=52.3
Q ss_pred hhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 551 FRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
...|++.|+||+|++.++.+.+.|+..|||+..| ||+..|.||+.|.+.|+.|+ |+|+
T Consensus 429 ~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vL---hg~~~~rEr~ii~~ag~~g~--VlIA 486 (844)
T 1tf5_A 429 YMTGQPVLVGTVAVETSELISKLLKNKGIPHQVL---NAKNHEREAQIIEEAGQKGA--VTIA 486 (844)
T ss_dssp HHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEE---CSSCHHHHHHHHTTTTSTTC--EEEE
T ss_pred HhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEe---eCCccHHHHHHHHHcCCCCe--EEEe
Confidence 3578899999999999999999999999999999 99999999999999998875 5543
No 116
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=97.95 E-value=5.1e-05 Score=87.04 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=29.9
Q ss_pred hhcceEEEEecccchhhHHHHHHhhc------------CccceeEeeeccchhhhhHhhHhhhhhc-CCceeEEec
Q psy17912 552 RIGRASILVSHYNKSQQERDRVLNEF------------RIGRASILVSHYNKSQQERDRVLNEFRI-GRASILVSH 614 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 614 (779)
..+...|+|++|.+.++.+...|++. |++..++ ||+.+|.||..+++.|+. |+..|||+-
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~R~~~~~~F~~~g~~~vLvaT 460 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQ---TTGMTLPSQKGVLDAFKTSKDNRLLIAT 460 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC---------------------------------CCEEEEE
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCccc---ccccCHHHHHHHHHHhcccCceEEEEEc
Confidence 45678999999999999999999987 6777777 999999999999999999 999999985
No 117
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.91 E-value=7.8e-06 Score=80.27 Aligned_cols=65 Identities=26% Similarity=0.404 Sum_probs=51.0
Q ss_pred HHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 547 VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 547 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+|++...+...|+|++|++.++++.+.|+..|+++..+ ||+.+|.+|+.++++|+.|+..|||+.
T Consensus 39 ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~l---hg~~~~~~r~~~~~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 39 LLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSI---HGDRSQRDREEALHQFRSGKSPILVAT 103 (185)
T ss_dssp HHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEE---C--------CHHHHHHHHTSSSEEEEE
T ss_pred HHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEE---eCCCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 45555456789999999999999999999999999999 999999999999999999999999975
No 118
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=97.91 E-value=7.3e-05 Score=85.54 Aligned_cols=58 Identities=21% Similarity=0.269 Sum_probs=30.0
Q ss_pred cceEEEEecccchhhHHHHHHhhcC------------ccceeEeeeccchhhhhHhhHhhhhhc-CCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEFR------------IGRASILVSHYNKSQQERDRVLNEFRI-GRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 614 (779)
+...|+|+++.+.++.+...|++.| ++..++ ||+.+|.||+.++++|+. |+..|||+-
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~R~~~~~~F~~~g~~~vLvaT 459 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNR---ATGMTLPAQKCVLEAFRASGDNNILIAT 459 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC-----------------------------CCSEEEEC
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCccc---ccccCHHHHHHHHHHHhcCCCeeEEEEc
Confidence 3789999999999999999999874 455555 889999999999999999 999999984
No 119
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.91 E-value=1.7e-05 Score=93.34 Aligned_cols=68 Identities=21% Similarity=0.163 Sum_probs=53.3
Q ss_pred CCCCHHHHHHHHHHhcCCC-EEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 149 QAPTAIQAQGWPIALSGCD-LVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~d-vii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
..+++-|.+|+..++..++ .||.||+|+|||.+..-.+.. +... +.++|+++||..-+.++.+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~-l~~~-------~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQ-AVKQ-------GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHH-HHHT-------TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHH-HHhC-------CCeEEEEcCchHHHHHHHHHHHhc
Confidence 4689999999999987664 789999999999775444443 3332 457999999999999988877654
No 120
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=97.87 E-value=0.0001 Score=88.78 Aligned_cols=60 Identities=13% Similarity=0.233 Sum_probs=29.7
Q ss_pred hhcceEEEEecccchhhHHHHHHhh------------cCccceeEeeeccchhhhhHhhHhhhhhc-CCceeEEec
Q psy17912 552 RIGRASILVSHYNKSQQERDRVLNE------------FRIGRASILVSHYNKSQQERDRVLNEFRI-GRASILVSH 614 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 614 (779)
..+...||||+|.+.++.+.+.|++ .|++..++ ||+.+|.||..++++|+. |+..|||+-
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~---hg~~~~~eR~~~l~~F~~~g~~~vLVaT 701 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQ---TTGMTLPSQKGVLDAFKTSKDNRLLIAT 701 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC-------------------------------CCSEEEEE
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCccc---CCCCCHHHHHHHHHHhhccCCceEEEEc
Confidence 4457899999999999999999988 47777777 999999999999999999 999999984
No 121
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.87 E-value=3.6e-05 Score=88.85 Aligned_cols=127 Identities=19% Similarity=0.202 Sum_probs=79.9
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
..+++.|.+++..++.++.+++.|+.|+|||.+.. .++..+.. .+.++++++||...+..+.+...
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~-~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~~------ 253 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTK-AVADLAES-------LGLEVGLCAPTGKAARRLGEVTG------ 253 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHH-HHHHHHHH-------TTCCEEEEESSHHHHHHHHHHHT------
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHH-HHHHHHHh-------cCCeEEEecCcHHHHHHhHhhhc------
Confidence 35789999999999999999999999999996532 23333333 24579999999998886655431
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCc
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 308 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~q 308 (779)
.....++ ..+.... + .+.........+++||||||+.+. ...+..++..++...+
T Consensus 254 -~~a~Tih---------~ll~~~~-----~------~~~~~~~~~~~~dvlIIDEasml~----~~~~~~Ll~~~~~~~~ 308 (574)
T 3e1s_A 254 -RTASTVH---------RLLGYGP-----Q------GFRHNHLEPAPYDLLIVDEVSMMG----DALMLSLLAAVPPGAR 308 (574)
T ss_dssp -SCEEEHH---------HHTTEET-----T------EESCSSSSCCSCSEEEECCGGGCC----HHHHHHHHTTSCTTCE
T ss_pred -ccHHHHH---------HHHcCCc-----c------hhhhhhcccccCCEEEEcCccCCC----HHHHHHHHHhCcCCCE
Confidence 1111100 0000000 0 000112234467899999999754 3466677777776777
Q ss_pred eEEeec
Q psy17912 309 VLMWSA 314 (779)
Q Consensus 309 illlSA 314 (779)
++++.-
T Consensus 309 lilvGD 314 (574)
T 3e1s_A 309 VLLVGD 314 (574)
T ss_dssp EEEEEC
T ss_pred EEEEec
Confidence 776643
No 122
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.85 E-value=1.7e-05 Score=75.94 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=55.4
Q ss_pred cceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...|+|++|++.++++.+.|+..|+++..+ ||+.+|.+|+.++++|+.|+..|||+.
T Consensus 35 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~---hg~~~~~~r~~~~~~f~~g~~~vlv~T 92 (163)
T 2hjv_A 35 PDSCIIFCRTKEHVNQLTDELDDLGYPCDKI---HGGMIQEDRFDVMNEFKRGEYRYLVAT 92 (163)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTTCCEEEE---CTTSCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCCcEEEE---eCCCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 4579999999999999999999999999999 999999999999999999999999986
No 123
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.84 E-value=1.7e-05 Score=76.87 Aligned_cols=58 Identities=19% Similarity=0.149 Sum_probs=55.3
Q ss_pred cceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...|+|++|++.++++...|+..|++++.+ ||+.+|.||+.++++|+.|+..|||+.
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~---hg~~~~~~r~~~~~~f~~g~~~vLvaT 88 (172)
T 1t5i_A 31 FNQVVIFVKSVQRCIALAQLLVEQNFPAIAI---HRGMPQEERLSRYQQFKDFQRRILVAT 88 (172)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHTTCCEEEE---CTTSCHHHHHHHHHHHHTTSCSEEEES
T ss_pred CCcEEEEECCHHHHHHHHHHHHhcCCCEEEE---ECCCCHHHHHHHHHHHHCCCCcEEEEC
Confidence 4579999999999999999999999999998 999999999999999999999999986
No 124
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.84 E-value=0.0001 Score=86.12 Aligned_cols=70 Identities=20% Similarity=0.167 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 148 FQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 148 ~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
+..+++.|.+|+..++....+++.||+|+|||.+..- ++..+... .+.++++++||...+.++.+.+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~-~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHH-HHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHH-HHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 4578999999999999888899999999999976433 33344331 2457999999999999988887654
No 125
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.84 E-value=2.1e-05 Score=77.56 Aligned_cols=58 Identities=21% Similarity=0.319 Sum_probs=55.3
Q ss_pred cceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...|+|++|++.++++...|+..|++++.+ ||+.+|.||+.++++|+.|+..|||+-
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~l---hg~~~~~~R~~~l~~F~~g~~~vLvaT 111 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGVEAVAI---HGGKDQEERTKAIEAFREGKKDVLVAT 111 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTCCEEEE---CTTSCHHHHHHHHHHHHHTSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE---eCCCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 4579999999999999999999999999999 999999999999999999999999985
No 126
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=97.83 E-value=0.00016 Score=76.97 Aligned_cols=203 Identities=13% Similarity=0.198 Sum_probs=110.4
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEeccc-----ccc-cccCcc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNK-----SQQ-ERDRVL 444 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~-----~~G-IDip~v 444 (779)
..++||.||++..+.++++.+++. +..+..++|+.+..+....+ . ..+|+|+|.-. ..+ ++...+
T Consensus 56 ~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~ 130 (337)
T 2z0m_A 56 GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSF 130 (337)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGC
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhC
Confidence 678999999999999999999853 57899999999877654433 2 47899999621 111 122222
Q ss_pred cccccccceeEEEEc-C---CCCCHHHHHHHhccCCCCCCeEEEEEcChHHH-HHHHHhhhccccceeeccccccHHHHH
Q psy17912 445 NEFRIGRASILVSQY-K---ESQQKRDRVLNEFRIGRASILVSHYNKSQQER-DRVLNEFRIGRASILVSHYNKSQQERD 519 (779)
Q Consensus 445 ~~~~~~~~~~~VI~y-~---~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~-~~~l~e~~~~~~~il~~~~~~~~~~~~ 519 (779)
+ .+|++= + ...-...+..-.... .......+++...+.. ...+..+..... .+....
T Consensus 131 ~--------~iViDEah~~~~~~~~~~~~~~~~~~-~~~~~~~~~SAT~~~~~~~~~~~~~~~~~-~~~~~~-------- 192 (337)
T 2z0m_A 131 E--------IVIIDEADLMFEMGFIDDIKIILAQT-SNRKITGLFSATIPEEIRKVVKDFITNYE-EIEACI-------- 192 (337)
T ss_dssp S--------EEEEESHHHHHHTTCHHHHHHHHHHC-TTCSEEEEEESCCCHHHHHHHHHHSCSCE-EEECSG--------
T ss_pred c--------EEEEEChHHhhccccHHHHHHHHhhC-CcccEEEEEeCcCCHHHHHHHHHhcCCce-eeeccc--------
Confidence 2 234431 0 000111111111111 1112222223222222 223333322111 000000
Q ss_pred HhhhhhcccccchhhhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhH
Q psy17912 520 RVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRV 599 (779)
Q Consensus 520 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (779)
..........+......+.-..+.+ ..+...|+|++|.+.++++.+.|+ .+..+ ||+-++.||+.+
T Consensus 193 ------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~---~~~~~~~~r~~~ 258 (337)
T 2z0m_A 193 ------GLANVEHKFVHVKDDWRSKVQALRE-NKDKGVIVFVRTRNRVAKLVRLFD----NAIEL---RGDLPQSVRNRN 258 (337)
T ss_dssp ------GGGGEEEEEEECSSSSHHHHHHHHT-CCCSSEEEECSCHHHHHHHHTTCT----TEEEE---CTTSCHHHHHHH
T ss_pred ------ccCCceEEEEEeChHHHHHHHHHHh-CCCCcEEEEEcCHHHHHHHHHHhh----hhhhh---cCCCCHHHHHHH
Confidence 0000000000111111121122322 355679999999999999999998 34445 999999999999
Q ss_pred hhhhhcCCceeEEec
Q psy17912 600 LNEFRIGRASILVSH 614 (779)
Q Consensus 600 ~~~~~~~~~~~~~~~ 614 (779)
+++|+.|+..|||+-
T Consensus 259 ~~~f~~~~~~vlv~T 273 (337)
T 2z0m_A 259 IDAFREGEYDMLITT 273 (337)
T ss_dssp HHHHHTTSCSEEEEC
T ss_pred HHHHHcCCCcEEEEc
Confidence 999999999999984
No 127
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.82 E-value=5.8e-05 Score=84.98 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=50.0
Q ss_pred cCCCCCCHHHHHHHHHHhcC----C-CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHH
Q psy17912 146 MGFQAPTAIQAQGWPIALSG----C-DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETV 220 (779)
Q Consensus 146 ~g~~~p~~~Q~~~i~~il~g----~-dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~ 220 (779)
+.|..+++-|++++..++.. . .+++.|+.|+|||.+. ..++..+.... ...+++++||...+..+.+.
T Consensus 21 ~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~------~~~il~~a~T~~Aa~~l~~~ 93 (459)
T 3upu_A 21 MTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTG------ETGIILAAPTHAAKKILSKL 93 (459)
T ss_dssp CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTT------CCCEEEEESSHHHHHHHHHH
T ss_pred CccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcC------CceEEEecCcHHHHHHHHhh
Confidence 56788999999999877532 3 8999999999999543 34444444421 13689999999888765544
Q ss_pred H
Q psy17912 221 A 221 (779)
Q Consensus 221 ~ 221 (779)
+
T Consensus 94 ~ 94 (459)
T 3upu_A 94 S 94 (459)
T ss_dssp H
T ss_pred h
Confidence 3
No 128
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.79 E-value=2.7e-05 Score=74.73 Aligned_cols=64 Identities=23% Similarity=0.374 Sum_probs=57.7
Q ss_pred HHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 547 VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 547 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
++++. .+...|+|++|++.++++...|+..|++...+ ||+.+|.||+.++++|+.|+..|||+.
T Consensus 24 ll~~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~---~~~~~~~~r~~~~~~f~~g~~~vlv~T 87 (165)
T 1fuk_A 24 LYDSI-SVTQAVIFCNTRRKVEELTTKLRNDKFTVSAI---YSDLPQQERDTIMKEFRSGSSRILIST 87 (165)
T ss_dssp HHHHT-TCSCEEEEESSHHHHHHHHHHHHHTTCCEEEE---CTTSCHHHHHHHHHHHHTTSCSEEEEE
T ss_pred HHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCEEEE---ECCCCHHHHHHHHHHHHcCCCEEEEEc
Confidence 44444 34569999999999999999999999999998 999999999999999999999999986
No 129
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=97.77 E-value=0.00019 Score=85.06 Aligned_cols=62 Identities=11% Similarity=0.154 Sum_probs=34.3
Q ss_pred hcceEEEEecccchhhHHHHHHhhcC----ccceeEe-----eeccchhhhhHhhHhhhhhc-CCceeEEec
Q psy17912 553 IGRASILVSHYNKSQQERDRVLNEFR----IGRASIL-----VSHYNKSQQERDRVLNEFRI-GRASILVSH 614 (779)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 614 (779)
.+...|||++|.+.++.+...|++.| +.+..+. ..||+-+|+||..|+++|+. |+..|||+-
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT 468 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIAT 468 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEE
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEe
Confidence 45679999999999999999999998 7766661 11559999999999999998 999999874
No 130
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=97.76 E-value=1.7e-05 Score=94.14 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=49.3
Q ss_pred cceEEEEecccchhhHHHHHHhhc------CccceeEeeeccc--------hhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEF------RIGRASILVSHYN--------KSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...|+|++|.+.++.+.+.|++. |+++..+ ||+ -++.||..+++.|+.|+..|||+-
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~l---hg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT 471 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHL---IGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIAT 471 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEEC---CCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEE
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEE---ECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEc
Confidence 788999999999999999999998 9999998 999 999999999999999999999874
No 131
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.76 E-value=0.00016 Score=86.61 Aligned_cols=70 Identities=19% Similarity=0.210 Sum_probs=55.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 148 FQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 148 ~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
+..+++.|.+|+..++.+.-++|.||+|+|||.+..-.+ .++... .+.++|+++||...+.++.+.+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i-~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIV-YHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHH-HHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHH-HHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 467899999999999887779999999999997654333 333321 1347999999999999998888765
No 132
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=97.73 E-value=0.00012 Score=83.38 Aligned_cols=58 Identities=22% Similarity=0.329 Sum_probs=49.9
Q ss_pred cceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...|+|+++.+.++++.+.|++.|+....+ ||+-++.+|+.+++.|+.|+..|||+-
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~---hg~~~~~~R~~il~~f~~g~~~VLVaT 414 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTADGHTVACL---TGNLEGAQRDAIMDSFRVGTSKVLVTT 414 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEE---C-----CTTGGGTHHHHSSSCCCCEEC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhCCCcEEEE---eCCCCHHHHHHHHHHHHCCCCeEEEeC
Confidence 4578999999999999999999999999999 999999999999999999999999885
No 133
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=97.72 E-value=0.00075 Score=76.67 Aligned_cols=222 Identities=9% Similarity=0.065 Sum_probs=114.6
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCC----CeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccccccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKG----WAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRI 449 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g----~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~~~~~ 449 (779)
...++||.||++..+++.++.|.+.+ ..+..++|+.+..++ ..+..+|+|+|.-.- ..... ...
T Consensus 156 ~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l--~~~~~---~~~ 223 (510)
T 2oca_A 156 YEGKILIIVPTTALTTQMADDFVDYRLFSHAMIKKIGGGASKDDK-------YKNDAPVVVGTWQTV--VKQPK---EWF 223 (510)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGEEECGGGCCTTGG-------GCTTCSEEEEEHHHH--TTSCG---GGG
T ss_pred CCCeEEEEECcHHHHHHHHHHHHHhhcCCccceEEEecCCccccc-------cccCCcEEEEeHHHH--hhchh---hhh
Confidence 44599999999999999999998752 468899999877654 357899999997311 11100 112
Q ss_pred ccceeEEEEcCCCCCHHHHHHHhccCCCCCCeEEEEEcChHHHH---HHHHhhhccccceeeccccccHHHHHHhhhhhc
Q psy17912 450 GRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERD---RVLNEFRIGRASILVSHYNKSQQERDRVLNEFR 526 (779)
Q Consensus 450 ~~~~~~VI~y~~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~---~~l~e~~~~~~~il~~~~~~~~~~~~~~l~~~~ 526 (779)
.....+|++=..-....++..-.... +........+....... ..+..+. +. .+..+.......+..+..+.
T Consensus 224 ~~~~liIiDE~H~~~~~~~~~il~~~-~~~~~~l~lSATp~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~l~~~~ 298 (510)
T 2oca_A 224 SQFGMMMNDECHLATGKSISSIISGL-NNCMFKFGLSGSLRDGKANIMQYVGMF-GE---IFKPVTTSKLMEDGQVTELK 298 (510)
T ss_dssp GGEEEEEEETGGGCCHHHHHHHGGGC-TTCCEEEEEESCGGGCSSCHHHHHHHH-CS---EECCCCCC---------CCE
T ss_pred hcCCEEEEECCcCCCcccHHHHHHhc-ccCcEEEEEEeCCCCCcccHHHhHHhh-CC---eEEeeCHHHHhhCCcCCCce
Confidence 22233444422112223333322222 22223333343332211 0111111 10 00111111111111111110
Q ss_pred ccc---------------cchh------hhcccccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEe
Q psy17912 527 IGR---------------ASIL------VSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASIL 585 (779)
Q Consensus 527 ~~~---------------~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 585 (779)
+-. ..+. ..+......=.+.+.+....+...+||....+.++++.+.|++.+.+.+.+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~l~~~L~~~~~~v~~~- 377 (510)
T 2oca_A 299 INSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQKDENAFVMFKHVSHGKAIFDLIKNEYDKVYYV- 377 (510)
T ss_dssp EEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHTTCSSEEEE-
T ss_pred EEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHHHHHHHcCCCeEEE-
Confidence 000 0000 000000011111122333334545555555888899999999998876666
Q ss_pred eeccchhhhhHhhHhhhhhcCCceeEEecc
Q psy17912 586 VSHYNKSQQERDRVLNEFRIGRASILVSHY 615 (779)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (779)
||+.++.||+.++++|+.|+..|||+.+
T Consensus 378 --~g~~~~~~r~~i~~~f~~g~~~vLv~T~ 405 (510)
T 2oca_A 378 --SGEVDTETRNIMKTLAENGKGIIIVASY 405 (510)
T ss_dssp --SSSTTHHHHHHHHHHHHHCCSCEEEEEH
T ss_pred --ECCCCHHHHHHHHHHHhCCCCCEEEEEc
Confidence 9999999999999999999999999883
No 134
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.71 E-value=0.0013 Score=77.17 Aligned_cols=71 Identities=14% Similarity=0.133 Sum_probs=53.5
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
..+++-|.+++. .....++|.|+.|||||.+..--+...+.... ....++|++++|+..+.++.+.+.+..
T Consensus 8 ~~Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~----~~~~~iL~ltft~~aa~e~~~rl~~~~ 78 (647)
T 3lfu_A 8 DSLNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVEN----CSPYSIMAVTFTNKAAAEMRHRIGQLM 78 (647)
T ss_dssp TTCCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSC----CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCC----CChhhEEEEeccHHHHHHHHHHHHHHh
Confidence 578999999997 33567999999999999776555544443321 112379999999999999998887764
No 135
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.70 E-value=3.8e-05 Score=77.03 Aligned_cols=64 Identities=25% Similarity=0.334 Sum_probs=57.9
Q ss_pred HHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 547 VLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 547 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+++... +...|+|++|++.++++.+.|+..|+++..+ ||+.+|++|+.+++.|+.|+..|||+.
T Consensus 25 ll~~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~l---hg~~~~~~r~~~~~~f~~g~~~vlvaT 88 (212)
T 3eaq_A 25 LLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQAL---HGDLSQGERERVLGAFRQGEVRVLVAT 88 (212)
T ss_dssp HHHHHC-CSCEEEECSSHHHHHHHHHHHHHHTCCEEEE---CSSSCHHHHHHHHHHHHSSSCCEEEEC
T ss_pred HHHhCC-CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEE---ECCCCHHHHHHHHHHHHCCCCeEEEec
Confidence 444333 5679999999999999999999999999999 999999999999999999999999985
No 136
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.69 E-value=3.7e-05 Score=74.52 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=55.2
Q ss_pred cceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...|+|++|++.++.+...|++.|++...+ ||+.++.+|+.+++.|+.|+..|||+.
T Consensus 34 ~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~---~g~~~~~~R~~~~~~f~~g~~~vLvaT 91 (175)
T 2rb4_A 34 IGQAIIFCQTRRNAKWLTVEMIQDGHQVSLL---SGELTVEQRASIIQRFRDGKEKVLITT 91 (175)
T ss_dssp CSEEEEECSCHHHHHHHHHHHHTTTCCEEEE---CSSCCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEEE---eCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 4579999999999999999999999999998 999999999999999999999999986
No 137
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.68 E-value=0.00023 Score=85.24 Aligned_cols=70 Identities=20% Similarity=0.164 Sum_probs=55.1
Q ss_pred CCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 148 FQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 148 ~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
...+++.|.+|+..++.+..+++.||+|+|||.+.. .++..+... .+.++++++||...+.++.+.+.+.
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 457899999999999988889999999999997643 334444432 2457999999999999888877654
No 138
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=97.66 E-value=0.00028 Score=86.34 Aligned_cols=60 Identities=13% Similarity=0.207 Sum_probs=30.4
Q ss_pred hhcceEEEEecccchhhHHHHHHhhc------------CccceeEeeeccchhhhhHhhHhhhhhc-CCceeEEec
Q psy17912 552 RIGRASILVSHYNKSQQERDRVLNEF------------RIGRASILVSHYNKSQQERDRVLNEFRI-GRASILVSH 614 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 614 (779)
..+...|||++|.+.++.+.+.|++. |++..++ ||+-+|.||..+++.|+. |+..||||-
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~---hg~m~~~eR~~il~~Fr~~g~~~VLVaT 701 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQ---TTGMTLPSQKGVLDAFKTSKDNRLLIAT 701 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------------CCSEEEEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCccc---CCCCCHHHHHHHHHHhhccCCeeEEEEe
Confidence 34678999999999999999999987 7777777 999999999999999999 999999873
No 139
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=97.65 E-value=0.0004 Score=81.80 Aligned_cols=58 Identities=9% Similarity=0.010 Sum_probs=53.7
Q ss_pred hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 552 RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
..|++.|+||+|+..++.+.+.|+..|+|...| ||+..|.||+-|.+.|+.|+ |+|+-
T Consensus 439 ~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vL---nak~~~rEa~iia~agr~G~--VtIAT 496 (853)
T 2fsf_A 439 AKGQPVLVGTISIEKSELVSNELTKAGIKHNVL---NAKFHANEAAIVAQAGYPAA--VTIAT 496 (853)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEEC---CTTCHHHHHHHHHTTTSTTC--EEEEE
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEe---cCChhHHHHHHHHhcCCCCe--EEEec
Confidence 568999999999999999999999999999999 99999999999999999994 77653
No 140
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=97.60 E-value=0.0016 Score=77.10 Aligned_cols=60 Identities=15% Similarity=0.179 Sum_probs=54.2
Q ss_pred HhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 550 EFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
....|++.|+||+|+..++.+.+.|+..|+|...| ||+..|.||+-|.+.|+.|+ |+|+-
T Consensus 456 ~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vL---nak~~~rEa~iia~agr~G~--VtIAT 515 (922)
T 1nkt_A 456 RYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVL---NAKYHEQEATIIAVAGRRGG--VTVAT 515 (922)
T ss_dssp HHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEE---CSSCHHHHHHHHHTTTSTTC--EEEEE
T ss_pred HHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEe---cCChhHHHHHHHHhcCCCCe--EEEec
Confidence 34568999999999999999999999999999999 99999999999999999994 66653
No 141
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=97.57 E-value=6.5e-05 Score=79.49 Aligned_cols=65 Identities=23% Similarity=0.325 Sum_probs=58.9
Q ss_pred HHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 546 RVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 546 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
++++.+. +...|+|++|++.++++...|+..|++++.+ ||+.+|++|+.+++.|+.|+..|||+.
T Consensus 21 ~ll~~~~-~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~l---hg~l~~~~r~~~~~~f~~g~~~vLVaT 85 (300)
T 3i32_A 21 DLLYVAS-PDRAMVFTRTKAETEEIAQGLLRLGHPAQAL---HGDMSQGERERVMGAFRQGEVRVLVAT 85 (300)
T ss_dssp HHHHHHC-CSSEEEECSSHHHHHHHHHHHHTTTCCEEEE---CSCCCTHHHHHHHHHHHHTSCCEEEEC
T ss_pred HHHHhcC-CCCEEEEECCHHHHHHHHHHHHhCCCCEEEE---eCCCCHHHHHHHHHHhhcCCceEEEEe
Confidence 3555555 6789999999999999999999999999999 999999999999999999999999874
No 142
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=97.48 E-value=0.00013 Score=90.40 Aligned_cols=198 Identities=14% Similarity=0.166 Sum_probs=115.3
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CC----eEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccccCccc
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GW----AAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLN 445 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~----~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GIDip~v~ 445 (779)
.+.++||.+|++..+.++++.++.. ++ .+..+||+.+..++.+..+.+.+ .+|+|+|+ ++-++.-.
T Consensus 98 ~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP--~~L~~~l~-- 171 (1054)
T 1gku_B 98 KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTT--QFLSKHYR-- 171 (1054)
T ss_dssp TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEH--HHHHHCST--
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcH--HHHHHHHH--
Confidence 4678999999999999999988753 56 89999999999998888888876 99999997 32222111
Q ss_pred ccccccceeEEEEc-----CCCCCHHHHHHHhccCC-------CCCCeEEEEEcChHHHH----HHHHhhhccccceeec
Q psy17912 446 EFRIGRASILVSQY-----KESQQKRDRVLNEFRIG-------RASILVSHYNKSQQERD----RVLNEFRIGRASILVS 509 (779)
Q Consensus 446 ~~~~~~~~~~VI~y-----~~p~s~~~yiQR~GRaG-------R~g~~~~~~~~~~~e~~----~~l~e~~~~~~~il~~ 509 (779)
.+.....+|++= +.-.++...+.+.|-.. .......++..+..... ..+..+..
T Consensus 172 --~L~~l~~lViDEah~~l~~~~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~-------- 241 (1054)
T 1gku_B 172 --ELGHFDFIFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN-------- 241 (1054)
T ss_dssp --TSCCCSEEEESCHHHHHTSTHHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC--------
T ss_pred --HhccCCEEEEeChhhhhhccccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE--------
Confidence 011222233330 11112233333343110 00111112211110000 11111100
Q ss_pred cccccHHHHHHhhhhhcccccchh---hhc--cc-ccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCcccee
Q psy17912 510 HYNKSQQERDRVLNEFRIGRASIL---VSH--YN-KSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRAS 583 (779)
Q Consensus 510 ~~~~~~~~~~~~l~~~~~~~~~~~---~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 583 (779)
+.+...... +.+ .. ........++++. +...|+|++|++.|+++...|++. +++..
T Consensus 242 ---------------i~v~~~~~~~~~i~~~~~~~~k~~~L~~ll~~~--~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~ 303 (1054)
T 1gku_B 242 ---------------FDIGSSRITVRNVEDVAVNDESISTLSSILEKL--GTGGIIYARTGEEAEEIYESLKNK-FRIGI 303 (1054)
T ss_dssp ---------------CCCSCCEECCCCEEEEEESCCCTTTTHHHHTTS--CSCEEEEESSHHHHHHHHHTTTTS-SCEEE
T ss_pred ---------------EEccCcccCcCCceEEEechhHHHHHHHHHhhc--CCCEEEEEcCHHHHHHHHHHHhhc-cCeeE
Confidence 011111000 000 00 1112223344444 567999999999999999999998 88777
Q ss_pred EeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 584 ILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
+ ||+. +.++++|+.|+..|||+
T Consensus 304 l---hg~~-----~~~l~~F~~G~~~VLVa 325 (1054)
T 1gku_B 304 V---TATK-----KGDYEKFVEGEIDHLIG 325 (1054)
T ss_dssp C---TTSS-----SHHHHHHHHTSCSEEEE
T ss_pred E---eccH-----HHHHHHHHcCCCcEEEE
Confidence 7 9986 58999999999999998
No 143
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.00075 Score=83.72 Aligned_cols=71 Identities=11% Similarity=0.114 Sum_probs=57.6
Q ss_pred HHHHHHHHhh--hcceEEEEecccchhhHHHHHHhhcCcccee------------------------------------E
Q psy17912 543 ERDRVLNEFR--IGRASILVSHYNKSQQERDRVLNEFRIGRAS------------------------------------I 584 (779)
Q Consensus 543 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~ 584 (779)
....++.... .+...|+|+++++.|+++...|+..|+++.. |
T Consensus 428 ~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV 507 (1108)
T 3l9o_A 428 DIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGI 507 (1108)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTE
T ss_pred HHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCe
Confidence 3444444443 2347999999999999999999988877522 5
Q ss_pred eeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 585 LVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
.+.||+-++.+|+.|++.|+.|...|||+
T Consensus 508 ~~~Hg~l~~~~R~~v~~~F~~G~ikVLVA 536 (1108)
T 3l9o_A 508 GIHHSGLLPILKEVIEILFQEGFLKVLFA 536 (1108)
T ss_dssp EEECSCSCHHHHHHHHHHHHHTCCCEEEE
T ss_pred eeecCCCCHHHHHHHHHHHhCCCCeEEEE
Confidence 66699999999999999999999999987
No 144
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.48 E-value=2.6e-05 Score=75.24 Aligned_cols=58 Identities=21% Similarity=0.276 Sum_probs=55.0
Q ss_pred cceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...|+|++|++.++++...|+..|+++..+ ||+.+|.||..++++|+.|+..|||+.
T Consensus 30 ~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~---~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 30 ATRSIVFVRKRERVHELANWLREAGINNCYL---EGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 4568999999999999999999999999999 999999999999999999999999986
No 145
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.06 E-value=0.0018 Score=76.89 Aligned_cols=216 Identities=13% Similarity=0.152 Sum_probs=114.4
Q ss_pred CCcEEEEecchhHHHHHHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc-----cccccccCcccc
Q psy17912 375 TSKTIIFVETKRKADDITRSVRN---KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYN-----KSQQERDRVLNE 446 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~---~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v-----~~~GIDip~v~~ 446 (779)
+.++|+.+|++..+.++++.++. .|+.+..++|+....++. .+..+|+|+|+- +..+..
T Consensus 68 ~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~------ 134 (720)
T 2zj8_A 68 GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMATGDYDSKDEW-------LGKYDIIIATAEKFDSLLRHGSS------ 134 (720)
T ss_dssp CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEECSCSSCCCGG-------GGGCSEEEECHHHHHHHHHHTCT------
T ss_pred CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEecCCCCccccc-------cCCCCEEEECHHHHHHHHHcChh------
Confidence 57899999999999999999863 478999999988765431 247899999971 111111
Q ss_pred cccccceeEEEEc-C---CCCCHHHHHHHhccCCCCCCeEEEEEcChHHHHHHHHhhhccccceeeccccccHHHHHHhh
Q psy17912 447 FRIGRASILVSQY-K---ESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVL 522 (779)
Q Consensus 447 ~~~~~~~~~VI~y-~---~p~s~~~yiQR~GRaGR~g~~~~~~~~~~~e~~~~l~e~~~~~~~il~~~~~~~~~~~~~~l 522 (779)
.+.....+|++= + ....-..+-.-.+|.-. ....+..+...... ..+.+|... .++...+.+...
T Consensus 135 -~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~-~~~ii~lSATl~n~-~~~~~~l~~--~~~~~~~rp~~l------ 203 (720)
T 2zj8_A 135 -WIKDVKILVADEIHLIGSRDRGATLEVILAHMLG-KAQIIGLSATIGNP-EELAEWLNA--ELIVSDWRPVKL------ 203 (720)
T ss_dssp -TGGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBT-TBEEEEEECCCSCH-HHHHHHTTE--EEEECCCCSSEE------
T ss_pred -hhhcCCEEEEECCcccCCCcccHHHHHHHHHhhc-CCeEEEEcCCcCCH-HHHHHHhCC--cccCCCCCCCcc------
Confidence 011222344431 1 11111111111122111 22233333322111 112222111 111111100000
Q ss_pred hhhcccccchhhhcc--cccHHHHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCcc--------------------
Q psy17912 523 NEFRIGRASILVSHY--NKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIG-------------------- 580 (779)
Q Consensus 523 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 580 (779)
.........+..... .......+.+.+....+...|+|+++.+.++++.+.|++..-.
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~ 283 (720)
T 2zj8_A 204 RRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEEN 283 (720)
T ss_dssp EEEEEETTEEEETTSCEEECSSTTHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSC
T ss_pred eEEEEeCCeeeccccchhhhhHHHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcc
Confidence 000000000000000 0011223445555677889999999999999999998864111
Q ss_pred ----------ceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 581 ----------RASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 581 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
...+...||+-+++||+.|++.|+.|...|+|+-
T Consensus 284 ~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT 327 (720)
T 2zj8_A 284 PTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVAT 327 (720)
T ss_dssp HHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEEC
T ss_pred cchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 0124445999999999999999999999999874
No 146
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.05 E-value=0.00061 Score=80.09 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=56.7
Q ss_pred hhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 551 FRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
...|...|+|++|++.++++...|++.|+++..+ ||+.+|.||..++++|+.|+..|||+
T Consensus 442 ~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~l---h~~~~~~~R~~~l~~f~~g~~~VLVa 501 (661)
T 2d7d_A 442 IERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYL---HSEIKTLERIEIIRDLRLGKYDVLVG 501 (661)
T ss_dssp HTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEE---CTTCCHHHHHHHHHHHHHTSCSEEEE
T ss_pred HhcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEE---eCCCCHHHHHHHHHHHhcCCeEEEEe
Confidence 3467899999999999999999999999999888 99999999999999999999999997
No 147
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=96.98 E-value=0.0063 Score=74.71 Aligned_cols=71 Identities=15% Similarity=0.127 Sum_probs=58.1
Q ss_pred HHHHHHHHhhhc--ceEEEEecccchhhHHHHHHhhcCccce------------------------------------eE
Q psy17912 543 ERDRVLNEFRIG--RASILVSHYNKSQQERDRVLNEFRIGRA------------------------------------SI 584 (779)
Q Consensus 543 ~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~ 584 (779)
....+++..+.. ...|+|++|++.|+++...|++.|+... .|
T Consensus 323 ~~~~li~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi 402 (997)
T 4a4z_A 323 TWPEIVNYLRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGI 402 (997)
T ss_dssp HHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTE
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCe
Confidence 345555555544 3799999999999999999999888531 24
Q ss_pred eeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 585 LVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
.+.||+-++.+|+.|++.|+.|...|||+
T Consensus 403 ~~~H~gl~~~~R~~v~~~F~~G~~kVLvA 431 (997)
T 4a4z_A 403 AVHHGGLLPIVKELIEILFSKGFIKVLFA 431 (997)
T ss_dssp EEECTTSCHHHHHHHHHHHHTTCCSEEEE
T ss_pred eeecCCCCHHHHHHHHHHHHCCCCcEEEE
Confidence 55599999999999999999999999986
No 148
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=96.96 E-value=0.0031 Score=77.46 Aligned_cols=70 Identities=11% Similarity=0.113 Sum_probs=57.4
Q ss_pred HHHHHHhhh--cceEEEEecccchhhHHHHHHhhcCcccee------------------------------------Eee
Q psy17912 545 DRVLNEFRI--GRASILVSHYNKSQQERDRVLNEFRIGRAS------------------------------------ILV 586 (779)
Q Consensus 545 ~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~ 586 (779)
..+++.... +...|+|++|++.|+++.+.|+..|+...+ |.+
T Consensus 332 ~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~ 411 (1010)
T 2xgj_A 332 YKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGI 411 (1010)
T ss_dssp HHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEE
T ss_pred HHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeE
Confidence 345554443 337999999999999999999987776432 666
Q ss_pred eccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 587 SHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
.||+-++.+|+.|++.|+.|...|||+-
T Consensus 412 ~Hggl~~~eR~~ve~~F~~G~ikVLVAT 439 (1010)
T 2xgj_A 412 HHSGLLPILKEVIEILFQEGFLKVLFAT 439 (1010)
T ss_dssp ESTTSCHHHHHHHHHHHHTTCCSEEEEE
T ss_pred ECCCCCHHHHHHHHHHHhcCCCcEEEEe
Confidence 7999999999999999999999999874
No 149
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=96.88 E-value=0.0063 Score=72.05 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=56.5
Q ss_pred HHHHHHHhhhcceEEEEecccchhhHHHHHHhhc------------------------------CccceeEeeeccchhh
Q psy17912 544 RDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF------------------------------RIGRASILVSHYNKSQ 593 (779)
Q Consensus 544 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~~~~ 593 (779)
.+.+.+....+...|+|++|.+.++.+.+.|++. +++.+.+ ||+-++
T Consensus 232 ~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~---h~~l~~ 308 (702)
T 2p6r_A 232 EELVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFH---HAGLLN 308 (702)
T ss_dssp HHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEE---CTTSCH
T ss_pred HHHHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEe---cCCCCH
Confidence 4445666677889999999999999999988763 2344445 999999
Q ss_pred hhHhhHhhhhhcCCceeEEec
Q psy17912 594 QERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+||+.|++.|+.|+..|+|+-
T Consensus 309 ~~R~~v~~~f~~g~~~vlvaT 329 (702)
T 2p6r_A 309 GQRRVVEDAFRRGNIKVVVAT 329 (702)
T ss_dssp HHHHHHHHHHHTTSCCEEEEC
T ss_pred HHHHHHHHHHHCCCCeEEEEC
Confidence 999999999999999999874
No 150
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.87 E-value=0.0012 Score=77.67 Aligned_cols=60 Identities=18% Similarity=0.263 Sum_probs=56.6
Q ss_pred hhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 551 FRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
...+...|+||+|++.++++...|++.|+++..+ ||+.+|.||..++++|+.|+..|||+
T Consensus 436 ~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~l---h~~~~~~~R~~~~~~f~~g~~~VLva 495 (664)
T 1c4o_A 436 AARGERTLVTVLTVRMAEELTSFLVEHGIRARYL---HHELDAFKRQALIRDLRLGHYDCLVG 495 (664)
T ss_dssp HHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEE---CTTCCHHHHHHHHHHHHTTSCSEEEE
T ss_pred HhcCCEEEEEECCHHHHHHHHHHHHhcCCCceee---cCCCCHHHHHHHHHHhhcCCceEEEc
Confidence 3468899999999999999999999999998888 99999999999999999999999997
No 151
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=96.85 E-value=0.0014 Score=68.25 Aligned_cols=65 Identities=14% Similarity=0.275 Sum_probs=56.4
Q ss_pred HHHHHh-hhcceEEEEecccchhhHHHHHHhh-cCccceeEeeeccchhhhhHhhHhhhhhcC-Cce-eEEe
Q psy17912 546 RVLNEF-RIGRASILVSHYNKSQQERDRVLNE-FRIGRASILVSHYNKSQQERDRVLNEFRIG-RAS-ILVS 613 (779)
Q Consensus 546 ~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~ 613 (779)
++|.+. ..|.+.|||+++...++.+...|+. .|++.+.| ||+.++++|+.++++|+.| ..+ +|+|
T Consensus 103 ~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l---~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 103 EIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFL---YGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp HHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEE---CTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEE---ECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 345554 4678999999999999999999998 49999999 9999999999999999999 666 5666
No 152
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=96.76 E-value=0.0094 Score=68.96 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=50.0
Q ss_pred hhcceEEEEecccchhhHHHHHHhhcCccce-----eEeeeccchhhhhHhhHhhhhhcCCce---eEEec
Q psy17912 552 RIGRASILVSHYNKSQQERDRVLNEFRIGRA-----SILVSHYNKSQQERDRVLNEFRIGRAS---ILVSH 614 (779)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 614 (779)
..+.+.|+||++.+.++.+.+.|++.+.... .+...||+.++ +|+.++++|+.|+.+ |+||-
T Consensus 437 ~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt 506 (590)
T 3h1t_A 437 DRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTS 506 (590)
T ss_dssp CTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEES
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEEC
Confidence 3456899999999999999999999876532 13344998765 899999999999987 88874
No 153
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=96.71 E-value=0.014 Score=67.97 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=44.9
Q ss_pred hcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 553 IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
.+...|+|++|++.++++.+.|++.|++++.+ ||+.+|+| |+.+...|||+-
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~l---HG~l~q~e-------r~~~~~~VLVAT 446 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGLGINAVAY---YRGLDVSV-------IPTIGDVVVVAT 446 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTTTCCEEEE---CTTSCGGG-------SCSSSCEEEEEC
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEe---cCCCCHHH-------HHhCCCcEEEEC
Confidence 46679999999999999999999999999999 99999987 445556888763
No 154
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=96.67 E-value=0.0042 Score=73.69 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=58.0
Q ss_pred HHHHHHHHhhhcceEEEEecccchhhHHHHHHhhcCcc---------------------------------ceeEeeecc
Q psy17912 543 ERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIG---------------------------------RASILVSHY 589 (779)
Q Consensus 543 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~ 589 (779)
..+.+.+....+...|+|+++.+.++++.+.|++..-. ...|.+.||
T Consensus 241 ~~~~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~ 320 (715)
T 2va8_A 241 IIAYTLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHA 320 (715)
T ss_dssp HHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECT
T ss_pred HHHHHHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECC
Confidence 34556666778889999999999999999999864211 012455599
Q ss_pred chhhhhHhhHhhhhhcCCceeEEec
Q psy17912 590 NKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 590 ~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+-+++||+.|++.|+.|+..|+|+-
T Consensus 321 ~l~~~~r~~v~~~f~~g~~~vlvaT 345 (715)
T 2va8_A 321 GLSKALRDLIEEGFRQRKIKVIVAT 345 (715)
T ss_dssp TSCHHHHHHHHHHHHTTCSCEEEEC
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 9999999999999999999999874
No 155
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=96.64 E-value=0.0077 Score=66.94 Aligned_cols=54 Identities=7% Similarity=0.046 Sum_probs=49.3
Q ss_pred cceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...|+|++|++.++++...|++.|++...+ ||+ +|+.++++|+.|+..|||+-
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~l---hg~----~r~~~~~~f~~g~~~vLVaT 224 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYL---NRK----TFESEYPKCKSEKWDFVITT 224 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHTTCCEEEE---STT----THHHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEe---CCc----cHHHHHHhhcCCCCeEEEEC
Confidence 4469999999999999999999999988888 986 78999999999999999985
No 156
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=96.63 E-value=0.0083 Score=67.22 Aligned_cols=60 Identities=25% Similarity=0.366 Sum_probs=50.4
Q ss_pred HHHHHhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 546 RVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 546 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+++.+ ..+...|+|+++.+.++++.+.|+ ...| ||+.++.||+.++++|+.|+..|||+-
T Consensus 342 ~~l~~-~~~~k~lvF~~~~~~~~~l~~~l~-----~~~~---~g~~~~~~R~~~~~~F~~g~~~vLv~T 401 (472)
T 2fwr_A 342 EILER-HRKDKIIIFTRHNELVYRISKVFL-----IPAI---THRTSREEREEILEGFRTGRFRAIVSS 401 (472)
T ss_dssp HHHHH-TSSSCBCCBCSCHHHHHHHHHHTT-----CCBC---CSSSCSHHHHTHHHHHHHSSCSBCBCS
T ss_pred HHHHh-CCCCcEEEEECCHHHHHHHHHHhC-----ccee---eCCCCHHHHHHHHHHHhCCCCCEEEEc
Confidence 34555 346789999999999999998884 3344 999999999999999999999999885
No 157
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.42 E-value=0.009 Score=65.08 Aligned_cols=71 Identities=15% Similarity=-0.046 Sum_probs=55.5
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 226 (779)
.|+|+|...+..+...+-+++..+-+.|||.+....++..+... .+..+++++|+..-|..+.+.++.+..
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 68999999998776556789999999999987666555444432 255899999999999888877776654
No 158
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=96.41 E-value=0.0093 Score=62.95 Aligned_cols=114 Identities=9% Similarity=0.038 Sum_probs=79.2
Q ss_pred cccchhHHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecc
Q psy17912 355 QEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYN 434 (779)
Q Consensus 355 ~~~~k~~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v 434 (779)
....|...|..++..+.+ .+.++|||++..+..+.+.++|...++....+.|.....++. . .+....|.+.|..
T Consensus 106 ~~SGKf~~L~~LL~~l~~-~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~~k-~----~~~~~~i~Lltsa 179 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQE-YETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSAAA-A----NDFSCTVHLFSSE 179 (328)
T ss_dssp HTCHHHHHHHHHHHHHTT-SCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------CCSEEEEEEESS
T ss_pred HcCccHHHHHHHHHHHHh-CCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhhhh-c----ccCCceEEEEECC
Confidence 467899999999998854 578999999999999999999999999999999986543322 1 2345566666777
Q ss_pred cccccccCcccccccccceeEEEEcCCCCCHHH-HHHHhccCCCC
Q psy17912 435 KSQQERDRVLNEFRIGRASILVSQYKESQQKRD-RVLNEFRIGRA 478 (779)
Q Consensus 435 ~~~GIDip~v~~~~~~~~~~~VI~y~~p~s~~~-yiQR~GRaGR~ 478 (779)
.+-|++.+..+ ... ...||.||..+++.. .+|.+-|+-|.
T Consensus 180 g~~gin~~~~n---l~~-aD~VI~~DsdwNp~~d~iQa~~r~~R~ 220 (328)
T 3hgt_A 180 GINFTKYPIKS---KAR-FDMLICLDTTVDTSQKDIQYLLQYKRE 220 (328)
T ss_dssp CCCTTTSCCCC---CSC-CSEEEECSTTCCTTSHHHHHHHCCC--
T ss_pred CCCCcCccccc---CCC-CCEEEEECCCCCCCChHHHHHHHHhhh
Confidence 77777633111 011 128899998887765 37766565554
No 159
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.39 E-value=0.0089 Score=57.54 Aligned_cols=19 Identities=32% Similarity=0.335 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.++.+++.||+|+|||..+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4788999999999999554
No 160
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.31 E-value=0.036 Score=64.12 Aligned_cols=73 Identities=15% Similarity=-0.056 Sum_probs=57.3
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
.|+|+|...+..+...+-+++..+-++|||.+....++..+... .+..+++++|+...|..+.+.++.+....
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~ 235 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELL 235 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhC
Confidence 47999999998876667799999999999988765555444432 24589999999999999888887776544
No 161
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.22 E-value=0.0079 Score=58.55 Aligned_cols=40 Identities=25% Similarity=0.112 Sum_probs=26.9
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTR 211 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr 211 (779)
.|+-.++.||+|+|||...+-.+...... +.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~--------g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLG--------KKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHT--------TCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEeecc
Confidence 35668899999999997654433333222 34788888874
No 162
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.22 E-value=0.0071 Score=59.32 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=27.4
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTR 211 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr 211 (779)
.|+-.++.||+|+|||...+-.+...... +.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~--------g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIA--------KQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHC--------CCEEEEEEecc
Confidence 35567899999999997655444443322 45789998874
No 163
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=96.17 E-value=0.0057 Score=71.65 Aligned_cols=69 Identities=17% Similarity=0.246 Sum_probs=60.7
Q ss_pred HHHHHHHHhh--hcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCce---eEEec
Q psy17912 543 ERDRVLNEFR--IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRAS---ILVSH 614 (779)
Q Consensus 543 ~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 614 (779)
-.+.+++..+ .+.+.|||+++....|.+...|+..|++.+.| ||+.++.+|+.++++|+.|..+ +|+|-
T Consensus 403 ~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~g~~~~~l---~G~~~~~~R~~~i~~F~~~~~~~~v~L~st 476 (644)
T 1z3i_X 403 VLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNRRYLYVRL---DGTMSIKKRAKIVERFNNPSSPEFIFMLSS 476 (644)
T ss_dssp HHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHHTCCEEEE---CSSCCHHHHHHHHHHHHSTTCCCCEEEEEG
T ss_pred HHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHCCCCEEEE---eCCCCHHHHHHHHHHhcCCCCCcEEEEEec
Confidence 3456777765 37799999999999999999999999999999 9999999999999999999886 66664
No 164
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=96.10 E-value=0.0077 Score=69.90 Aligned_cols=59 Identities=10% Similarity=0.170 Sum_probs=52.2
Q ss_pred HhhhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEe
Q psy17912 550 EFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 613 (779)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (779)
....|++.|+||+|++.++.+.+.|+..|+|+..+ ||+..|.||..|...|+.|. |+|+
T Consensus 470 ~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vL---hgkq~~rE~~ii~~ag~~g~--VtVA 528 (822)
T 3jux_A 470 RYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVL---NAKYHEKEAEIVAKAGQKGM--VTIA 528 (822)
T ss_dssp HHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEE---CSCHHHHHHHHHHHHHSTTC--EEEE
T ss_pred HhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEe---eCCchHHHHHHHHhCCCCCe--EEEE
Confidence 34568999999999999999999999999999999 99999999999998888875 4444
No 165
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.10 E-value=0.0098 Score=59.79 Aligned_cols=92 Identities=16% Similarity=0.143 Sum_probs=52.9
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGP 243 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~ 243 (779)
.|.-+++.|++|+|||++.+-.+...... +.+++++.|...- . ....+....++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~--------g~kVli~~~~~d~--r---~~~~i~srlG~~~----------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA--------DVKYLVFKPKIDT--R---SIRNIQSRTGTSL----------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT--------TCCEEEEEECCCG--G---GCSSCCCCCCCSS-----------
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc--------CCEEEEEEeccCc--h---HHHHHHHhcCCCc-----------
Confidence 45568899999999997655444443322 4468888776420 0 0001222222110
Q ss_pred hHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhh
Q psy17912 244 QVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRML 288 (779)
Q Consensus 244 ~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~ 288 (779)
..+.+.+...+.+.+... ..-.++++||||||+.+.
T Consensus 67 --------~~~~~~~~~~i~~~i~~~-~~~~~~dvViIDEaQ~l~ 102 (223)
T 2b8t_A 67 --------PSVEVESAPEILNYIMSN-SFNDETKVIGIDEVQFFD 102 (223)
T ss_dssp --------CCEEESSTHHHHHHHHST-TSCTTCCEEEECSGGGSC
T ss_pred --------cccccCCHHHHHHHHHHH-hhCCCCCEEEEecCccCc
Confidence 123456677777766542 223458999999999743
No 166
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=96.09 E-value=0.004 Score=76.34 Aligned_cols=59 Identities=24% Similarity=0.248 Sum_probs=54.9
Q ss_pred hcceEEEEecccchhhHHHHHHhh-cCccceeEeeeccchhhhhHhhHhhhhhcCC--ceeEEec
Q psy17912 553 IGRASILVSHYNKSQQERDRVLNE-FRIGRASILVSHYNKSQQERDRVLNEFRIGR--ASILVSH 614 (779)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 614 (779)
.+...|+||+|++.++++...|++ .|++++.+ ||+.+|.||+++++.|+.|+ ..|||+.
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~l---hG~~~~~~R~~~l~~F~~g~~~~~vLvaT 563 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLREREGIRAAVF---HEGMSIIERDRAAAWFAEEDTGAQVLLCS 563 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEE---CTTSCTTHHHHHHHHHHSTTSSCEEEECS
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEE---eCCCCHHHHHHHHHHHhCCCCcccEEEec
Confidence 467899999999999999999994 79999999 99999999999999999998 9999874
No 167
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=95.91 E-value=0.016 Score=69.20 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=50.8
Q ss_pred cceEEEEecccchhhHHHHHHhh--------cCccceeEeeeccchhhhhHhhHhhhhh-----cCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNE--------FRIGRASILVSHYNKSQQERDRVLNEFR-----IGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ 614 (779)
+...|+|+++.+.++++.+.|++ ...+.+.++..||+.+++||+.|++.|+ .|+..|+|+-
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT 376 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVIST 376 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeC
Confidence 66899999999999999999985 1223334444499999999999999999 9999999874
No 168
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.75 E-value=0.021 Score=63.07 Aligned_cols=107 Identities=18% Similarity=0.124 Sum_probs=60.4
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhhH
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQV 245 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~~ 245 (779)
+-.++.|+.|+|||.... .+... ...+|++||++++..+.+.+.+....
T Consensus 162 ~v~~I~G~aGsGKTt~I~-----~~~~~--------~~~lVlTpT~~aa~~l~~kl~~~~~~------------------ 210 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEIL-----SRVNF--------EEDLILVPGRQAAEMIRRRANASGII------------------ 210 (446)
T ss_dssp EEEEEEECTTSCHHHHHH-----HHCCT--------TTCEEEESCHHHHHHHHHHHTTTSCC------------------
T ss_pred cEEEEEcCCCCCHHHHHH-----HHhcc--------CCeEEEeCCHHHHHHHHHHhhhcCcc------------------
Confidence 357899999999995432 11111 13699999999999877766432100
Q ss_pred HHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeec
Q psy17912 246 KALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSA 314 (779)
Q Consensus 246 ~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSA 314 (779)
.....-|.|.+.++.. ......-..++||||||-. .+. ..+..++...++ .+++++.-
T Consensus 211 ----~~~~~~V~T~dsfL~~--~~~~~~~~~d~liiDE~sm-~~~---~~l~~l~~~~~~-~~vilvGD 268 (446)
T 3vkw_A 211 ----VATKDNVRTVDSFLMN--YGKGARCQFKRLFIDEGLM-LHT---GCVNFLVEMSLC-DIAYVYGD 268 (446)
T ss_dssp ----CCCTTTEEEHHHHHHT--TTSSCCCCCSEEEEETGGG-SCH---HHHHHHHHHTTC-SEEEEEEC
T ss_pred ----ccccceEEEeHHhhcC--CCCCCCCcCCEEEEeCccc-CCH---HHHHHHHHhCCC-CEEEEecC
Confidence 0012346677665431 1112223488999999974 332 233333343333 45555543
No 169
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.60 E-value=0.12 Score=54.70 Aligned_cols=18 Identities=22% Similarity=0.180 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
+..+++.||+|+|||...
T Consensus 37 ~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp CSSEEEECSSSSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 368999999999999654
No 170
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.07 Score=56.47 Aligned_cols=21 Identities=10% Similarity=-0.241 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCChhHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~l 184 (779)
.+.++++.||+|+|||.+.-.
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~ 64 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVND 64 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHH
Confidence 446799999999999966433
No 171
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.32 E-value=0.015 Score=57.71 Aligned_cols=40 Identities=20% Similarity=0.097 Sum_probs=27.4
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRE 212 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~ 212 (779)
|+-.+++++.|+|||+..+-.+...... +.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~--------g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFA--------KQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHT--------TCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHC--------CCEEEEEEeccC
Confidence 4456789999999997765555544333 457999998764
No 172
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=95.25 E-value=0.0078 Score=67.07 Aligned_cols=54 Identities=6% Similarity=0.052 Sum_probs=42.4
Q ss_pred cceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...|+|++|++.++++...|++.|++...+ || +||+.++++|+.|+..|||+-
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~l---hg----~~R~~~~~~F~~g~~~vLVaT 230 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKAGKSVVVL---NR----KTFEREYPTIKQKKPDFILAT 230 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEC---CS----SSCC--------CCCSEEEES
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHcCCCEEEe---cc----hhHHHHHhhhcCCCceEEEEC
Confidence 6689999999999999999999999998888 99 589999999999999999985
No 173
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=95.24 E-value=0.018 Score=65.04 Aligned_cols=65 Identities=14% Similarity=0.255 Sum_probs=55.6
Q ss_pred HHHH-hhhcceEEEEecccchhhHHHHHHhhc-CccceeEeeeccchhhhhHhhHhhhhhcC-Cce-eEEec
Q psy17912 547 VLNE-FRIGRASILVSHYNKSQQERDRVLNEF-RIGRASILVSHYNKSQQERDRVLNEFRIG-RAS-ILVSH 614 (779)
Q Consensus 547 ~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~ 614 (779)
++.+ +..|.+.|+|+++...++.+...|+.. |++...| ||+.+++||+.++++|+.| ..+ ||+|-
T Consensus 333 ~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~---~g~~~~~~R~~~~~~F~~~~~~~vil~st 401 (500)
T 1z63_A 333 IIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFL---YGELSKKERDDIISKFQNNPSVKFIVLSV 401 (500)
T ss_dssp HHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEE---ETTSCHHHHHHHHHHHHHCTTCCCCEEEC
T ss_pred HHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEE---ECCCCHHHHHHHHHHhcCCCCCCEEEEec
Confidence 3444 356889999999999999999999985 9999988 9999999999999999999 444 67663
No 174
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=95.16 E-value=0.016 Score=67.94 Aligned_cols=55 Identities=15% Similarity=0.079 Sum_probs=51.7
Q ss_pred EEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhc--CCceeEEec
Q psy17912 557 SILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRI--GRASILVSH 614 (779)
Q Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 614 (779)
.|||++|++.++++.+.|++.|++.+.+ ||+.+|++|+.+++.|+. |+..|||+-
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~g~~v~~l---HG~L~~~~R~~~~~~F~~~~g~~~VLVAT 379 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIRGLESAVI---YGSLPPGTKLAQAKKFNDPNDPCKILVAT 379 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCCEEE---CTTSCHHHHHHHHHHHHCTTSSCCEEEEC
T ss_pred CEEEEcCHHHHHHHHHHHHhcCCCeeee---eccCCHHHHHHHHHHHHccCCCeEEEEeC
Confidence 5899999999999999999999998888 999999999999999999 999999874
No 175
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.04 E-value=0.01 Score=55.65 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCChhHH
Q psy17912 164 SGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~ 181 (779)
.++.+++.||+|+|||..
T Consensus 35 ~g~~~~l~G~~G~GKTtL 52 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHL 52 (149)
T ss_dssp CCSEEEEESSSTTTTCHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 688899999999999954
No 176
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.96 E-value=0.16 Score=48.08 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~ 183 (779)
..++++.||+|+|||....
T Consensus 43 ~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SCEEEEESCGGGCHHHHHH
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 4679999999999996543
No 177
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=94.90 E-value=0.043 Score=63.57 Aligned_cols=112 Identities=19% Similarity=0.258 Sum_probs=73.9
Q ss_pred CCCHHHHHHHHHHhc--CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhccc
Q psy17912 150 APTAIQAQGWPIALS--GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSA 227 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~--g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~ 227 (779)
.+|.-|++++..+.. ....++.|+-|.|||.+.-+.+-. +.. .++|.+|+.+-+....+ +...
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~-~~~----------~~~vtAP~~~a~~~l~~----~~~~ 239 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISR-IAG----------RAIVTAPAKASTDVLAQ----FAGE 239 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHH-SSS----------CEEEECSSCCSCHHHHH----HHGG
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHH-HHh----------CcEEECCCHHHHHHHHH----HhhC
Confidence 689999999988885 335789999999999554333322 211 36999999887664333 2110
Q ss_pred CCceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCC
Q psy17912 228 TATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDR 307 (779)
Q Consensus 228 ~~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~ 307 (779)
.|-+..|..++. .+...++||||||=.+. .+.+..++...
T Consensus 240 -------------------------~i~~~~Pd~~~~-------~~~~~dlliVDEAAaIp----~pll~~ll~~~---- 279 (671)
T 2zpa_A 240 -------------------------KFRFIAPDALLA-------SDEQADWLVVDEAAAIP----APLLHQLVSRF---- 279 (671)
T ss_dssp -------------------------GCCBCCHHHHHH-------SCCCCSEEEEETGGGSC----HHHHHHHHTTS----
T ss_pred -------------------------CeEEeCchhhhh-------CcccCCEEEEEchhcCC----HHHHHHHHhhC----
Confidence 144556754331 23458999999997765 55666666633
Q ss_pred ceEEeeccc
Q psy17912 308 QVLMWSATW 316 (779)
Q Consensus 308 qilllSAT~ 316 (779)
..++||.|+
T Consensus 280 ~~v~~~tTv 288 (671)
T 2zpa_A 280 PRTLLTTTV 288 (671)
T ss_dssp SEEEEEEEB
T ss_pred CeEEEEecC
Confidence 467788886
No 178
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=94.87 E-value=0.037 Score=55.25 Aligned_cols=19 Identities=16% Similarity=-0.017 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.++.+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999654
No 179
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=94.81 E-value=0.019 Score=66.74 Aligned_cols=54 Identities=7% Similarity=0.018 Sum_probs=50.1
Q ss_pred cceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...|+|++|++.++++...|++.|++++.+ ||+ +|+.++++|+.|+..|||+-
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~l---hg~----~R~~~l~~F~~g~~~VLVaT 408 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQL---SRK----TFDTEYPKTKLTDWDFVVTT 408 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHTTCCEEEE---CTT----THHHHTTHHHHSCCSEEEEC
T ss_pred CCCEEEEECChhHHHHHHHHHHHcCCcEEEE---ChH----HHHHHHHhhcCCCcEEEEEC
Confidence 5579999999999999999999999999998 984 78899999999999999985
No 180
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=94.78 E-value=0.23 Score=48.33 Aligned_cols=17 Identities=29% Similarity=0.173 Sum_probs=15.0
Q ss_pred CCEEEEccCCCChhHHH
Q psy17912 166 CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~ 182 (779)
+++++.||+|+|||..+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999654
No 181
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.73 E-value=0.32 Score=53.86 Aligned_cols=19 Identities=26% Similarity=0.074 Sum_probs=15.7
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~ 183 (779)
...+++.||+|+|||..+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~ 148 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ 148 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3579999999999996543
No 182
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=94.72 E-value=0.058 Score=59.60 Aligned_cols=132 Identities=18% Similarity=0.214 Sum_probs=72.9
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc--cCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChh
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA--PTRELAQQIETVANDFGSATATRVACVFGGAPKGP 243 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~--Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~ 243 (779)
..+++++++|+|||++....+.. +... +.+++++. +.+.-+.+ .+..++...++.+.....+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~-l~~~-------G~kVllv~~D~~r~~a~e---qL~~~~~~~gv~~~~~~~~~---- 162 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYF-YKKR-------GYKVGLVAADVYRPAAYD---QLLQLGNQIGVQVYGEPNNQ---- 162 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHH-HHHT-------TCCEEEEEECCSCHHHHH---HHHHHHHTTTCCEECCTTCS----
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHHc-------CCeEEEEecCccchhHHH---HHHHHHHhcCCceeeccccC----
Confidence 35788899999999765443332 2221 33455544 34443332 23333333344432211110
Q ss_pred hHHHhhcCCeEEEeChHHHH-HHHHcCCcCCCCeeEEEEccchhhh---cCCchHHHHHHHhhcCCCCceEEeeccccHH
Q psy17912 244 QVKALQTGAEIVIATPGRLI-DYLEQGTINLHRTSYLVLDEADRML---DMGFEPQIRKIIGQIRPDRQVLMWSATWPKE 319 (779)
Q Consensus 244 ~~~~l~~~~~IiV~Tpe~Ll-~~l~~~~~~l~~i~~lViDEaH~l~---~~~f~~~l~~il~~l~~~~qilllSAT~~~~ 319 (779)
.|..+. ..+.. .....+++||||++-++. +..+...+..+...+.++.-+++++|+...+
T Consensus 163 --------------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 163 --------------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQK 226 (433)
T ss_dssp --------------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGG
T ss_pred --------------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchH
Confidence 122222 22221 123578999999998643 3335567777777777887888899987665
Q ss_pred HHHHHHHhc
Q psy17912 320 VQKLAEDFL 328 (779)
Q Consensus 320 v~~l~~~~l 328 (779)
....+..|.
T Consensus 227 a~~~a~~f~ 235 (433)
T 3kl4_A 227 AYDLASRFH 235 (433)
T ss_dssp GHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 555555553
No 183
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=94.72 E-value=0.023 Score=66.70 Aligned_cols=55 Identities=9% Similarity=0.076 Sum_probs=50.7
Q ss_pred hcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 553 IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
.+...|+|++|++.++++...|++.|+....+ || +||+.++++|+.|+..|||+-
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~l---Hg----~eR~~v~~~F~~g~~~VLVaT 463 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQL---NR----KSYDTEYPKCKNGDWDFVITT 463 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEE---CS----SSHHHHGGGGGTCCCSEEEEC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEe---Ch----HHHHHHHHHHHCCCceEEEEC
Confidence 36689999999999999999999999998888 99 389999999999999999974
No 184
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.63 E-value=0.14 Score=54.89 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3568999999999999654
No 185
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.51 E-value=0.088 Score=55.57 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=25.1
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
....+|||||+|.+........+..++...+++.++++.|
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~ 143 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITA 143 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEE
T ss_pred CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 4678999999998762223345555555554555565543
No 186
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=94.49 E-value=0.018 Score=64.51 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=50.5
Q ss_pred cceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...|+|++|++.++++...|+..|++.+++ ||+ +|+.++++|+.|+..|||+-
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~l---h~~----~R~~~~~~f~~g~~~iLVaT 243 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQL---NRK----SYDTEYPKCKNGDWDFVITT 243 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEE---STT----CCCCCGGGSSSCCCSEEEES
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEec---CHH----HHHHHHhhccCCCceEEEEC
Confidence 5679999999999999999999999999999 984 89999999999999999985
No 187
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.46 E-value=0.34 Score=49.88 Aligned_cols=55 Identities=20% Similarity=0.158 Sum_probs=30.7
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHH--HhcCCCEEEEccCCCChhHHH
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPI--ALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~--il~g~dvii~apTGsGKTl~~ 182 (779)
|-.+|+++.-.+..++.+...-. .+ -...+.+.. +...+.+++.||+|+|||..+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVE-LP-LKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH-HH-HHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH-HH-hhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 34567777766667666653100 00 000011111 134568999999999999554
No 188
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=94.31 E-value=0.13 Score=54.74 Aligned_cols=34 Identities=18% Similarity=0.074 Sum_probs=23.6
Q ss_pred CCHHHHHHHHHHh----cCC---CEEEEccCCCChhHHHHH
Q psy17912 151 PTAIQAQGWPIAL----SGC---DLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 151 p~~~Q~~~i~~il----~g~---dvii~apTGsGKTl~~~l 184 (779)
+.|+|.+++..+. +++ .+++.||.|+|||..+..
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~ 43 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYA 43 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHH
Confidence 3566666665543 443 389999999999966543
No 189
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=94.30 E-value=0.065 Score=53.76 Aligned_cols=40 Identities=18% Similarity=0.058 Sum_probs=28.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTR 211 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr 211 (779)
.|+-.++.|+.|+|||...+-.+...... +.+++++-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~--------g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTT--------TCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC--------CCeEEEEeecC
Confidence 46667899999999997665555544332 55789998875
No 190
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=94.29 E-value=0.37 Score=49.32 Aligned_cols=18 Identities=22% Similarity=0.089 Sum_probs=15.1
Q ss_pred CCEEEEccCCCChhHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~ 183 (779)
..+++.||+|+|||..+.
T Consensus 65 ~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 479999999999996543
No 191
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.22 E-value=0.056 Score=53.62 Aligned_cols=41 Identities=22% Similarity=0.094 Sum_probs=27.1
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRE 212 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~ 212 (779)
.|.-.++++|.|+|||...+-.+. .... .+.+++|+.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~-r~~~-------~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLR-RGIY-------AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHH-HHHH-------TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-HHHH-------cCCceEEEEeccC
Confidence 456688999999999965544443 3333 1446899999653
No 192
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=94.14 E-value=0.042 Score=61.32 Aligned_cols=54 Identities=7% Similarity=0.019 Sum_probs=48.9
Q ss_pred cceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCceeEEec
Q psy17912 554 GRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSH 614 (779)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (779)
+...|+|++|++.++++...|++.|++.+++ ||+. |+.++++|+.|+..|||+-
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~l---h~~~----~~~~~~~f~~g~~~vLVaT 241 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKSGKRVIQL---SRKT----FDTEYPKTKLTDWDFVVTT 241 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTTTCCEEEE---CTTT----HHHHGGGGGSSCCSEEEEC
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHcCCeEEEC---CHHH----HHHHHHhhccCCceEEEEC
Confidence 4579999999999999999999999999988 9964 4679999999999999985
No 193
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.11 E-value=0.28 Score=47.67 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=23.6
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
....+|||||+|.+... ....+..++........+++.|
T Consensus 101 ~~~~vliiDe~~~l~~~-~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 101 APFKIIFLDEADALTAD-AQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred cCceEEEEeChhhcCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45679999999987543 2334555555544445455444
No 194
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=94.00 E-value=0.058 Score=64.74 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=58.6
Q ss_pred HHHHHHHh-hhcceEEEEecccchhhHHHHHHhhcCccceeEeeeccchhhhhHhhHhhhhhcCCce---eEEe
Q psy17912 544 RDRVLNEF-RIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRAS---ILVS 613 (779)
Q Consensus 544 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 613 (779)
.+++|..+ ..|.+.|||+.+.+..+.+...|+..|++.+.| ||..++.||..+++.|+.|.+. +|+|
T Consensus 561 L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i---~G~~~~~eR~~~i~~F~~~~~~~~v~LlS 631 (800)
T 3mwy_W 561 LDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRL---DGTVPSAQRRISIDHFNSPDSNDFVFLLS 631 (800)
T ss_dssp HHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEE---STTSCHHHHHHHHHTTSSTTCSCCCEEEE
T ss_pred HHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEE---eCCCCHHHHHHHHHHhhCCCCCceEEEEe
Confidence 44455555 356799999999999999999999999999999 9999999999999999998876 6666
No 195
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.94 E-value=0.059 Score=52.67 Aligned_cols=39 Identities=18% Similarity=0.037 Sum_probs=26.6
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccC
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPT 210 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Pt 210 (779)
.++=.++.||+|+|||...+-.+-..... +.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~--------~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA--------QYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT--------TCCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc--------CCeEEEEccc
Confidence 35668899999999995544444433332 3468898886
No 196
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.72 E-value=0.24 Score=52.15 Aligned_cols=19 Identities=21% Similarity=0.153 Sum_probs=16.2
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~ 183 (779)
++++++.||+|+|||..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5789999999999996543
No 197
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=93.70 E-value=0.074 Score=62.45 Aligned_cols=70 Identities=14% Similarity=0.032 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 150 APTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 150 ~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
.+++-|.+++.. .+..++|.|+.|||||.+..--+...+.... .....+|+|+.|+..|.++.+.+.+..
T Consensus 2 ~L~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~----~~~~~IL~lTfT~~Aa~em~~Rl~~~l 71 (673)
T 1uaa_A 2 RLNPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCG----YQARHIAAVTFTNKAAREMKERVGQTL 71 (673)
T ss_dssp CCCHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHC----CCGGGEEEEESSHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHc
Confidence 578999999875 3568999999999999776555544443311 012369999999999999998887764
No 198
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=93.59 E-value=0.34 Score=45.79 Aligned_cols=18 Identities=33% Similarity=0.300 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
...+++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 367999999999999654
No 199
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.53 E-value=0.51 Score=49.90 Aligned_cols=42 Identities=19% Similarity=0.011 Sum_probs=27.1
Q ss_pred CCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh----cCCCEEEEccCCCChhHHH
Q psy17912 129 HFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIAL----SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 129 ~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il----~g~dvii~apTGsGKTl~~ 182 (779)
+|+++--.+.+++.+. ..+.... ...++++.||+|+|||..+
T Consensus 27 ~~~~iiG~~~~~~~l~------------~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLN------------VFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SGGGCCSCHHHHHHHH------------HHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CHHHhCChHHHHHHHH------------HHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 4666555566666654 3333332 2258999999999999654
No 200
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=93.51 E-value=0.32 Score=52.26 Aligned_cols=16 Identities=25% Similarity=0.511 Sum_probs=14.1
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
.+++.||+|+|||...
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 7999999999999654
No 201
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.47 E-value=0.3 Score=52.54 Aligned_cols=18 Identities=28% Similarity=0.298 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
.+.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 356999999999999654
No 202
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.42 E-value=0.085 Score=55.16 Aligned_cols=18 Identities=22% Similarity=0.290 Sum_probs=15.2
Q ss_pred CCEEEEccCCCChhHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~ 183 (779)
.++++.||+|+|||..+.
T Consensus 68 ~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 469999999999996643
No 203
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=92.95 E-value=0.18 Score=59.74 Aligned_cols=71 Identities=15% Similarity=0.080 Sum_probs=52.9
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhc
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFG 225 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~ 225 (779)
..+++-|.+++.. ....++|.|+.|||||.+..--+...+.... .....+|+|+.|+..|.++.+.+.+..
T Consensus 10 ~~Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~----~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKH----VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTC----CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcC----CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 5789999999875 3568999999999999776555554444321 112369999999999999888877653
No 204
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.79 E-value=0.5 Score=52.12 Aligned_cols=132 Identities=18% Similarity=0.139 Sum_probs=70.4
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEc--cCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChh
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLA--PTRELAQQIETVANDFGSATATRVACVFGGAPKGP 243 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~--Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~ 243 (779)
..+++++++|+|||++..-.+. ++.. .+.+++++. |.+.-+.+ .+..++...++.+.....+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~-~l~~-------~G~kVllv~~D~~R~aa~e---qL~~~~~~~gvpv~~~~~~----- 164 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLAR-YFQK-------RGYKVGVVCSDTWRPGAYH---QLRQLLDRYHIEVFGNPQE----- 164 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH-HHHT-------TTCCEEEEECCCSSTHHHH---HHHHHHGGGTCEEECCTTC-----
T ss_pred eEEEEECcCCCCHHHHHHHHHH-HHHH-------CCCeEEEEeCCCcchhHHH---HHHHHHHhcCCcEEecCCC-----
Confidence 4588999999999976544332 2322 134555555 44554433 3334444445554322111
Q ss_pred hHHHhhcCCeEEEeChHHHH-HHHHcCCcCCCCeeEEEEccchhhhcC-CchHHHHHHHhhcCCCCceEEeeccccHHHH
Q psy17912 244 QVKALQTGAEIVIATPGRLI-DYLEQGTINLHRTSYLVLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWPKEVQ 321 (779)
Q Consensus 244 ~~~~l~~~~~IiV~Tpe~Ll-~~l~~~~~~l~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~~~v~ 321 (779)
..|..+. +.+.. .....+++||||.+=++... .....+..+.....++.-++.+.||......
T Consensus 165 -------------~dp~~i~~~al~~--a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~ 229 (443)
T 3dm5_A 165 -------------KDAIKLAKEGVDY--FKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY 229 (443)
T ss_dssp -------------CCHHHHHHHHHHH--HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH
T ss_pred -------------CCHHHHHHHHHHH--HHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH
Confidence 1122221 11111 01124789999998654321 1334456666666777778888888765555
Q ss_pred HHHHHhc
Q psy17912 322 KLAEDFL 328 (779)
Q Consensus 322 ~l~~~~l 328 (779)
..+..|.
T Consensus 230 ~~a~~f~ 236 (443)
T 3dm5_A 230 NQALAFK 236 (443)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555543
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=92.77 E-value=0.49 Score=49.43 Aligned_cols=54 Identities=17% Similarity=0.190 Sum_probs=30.2
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHHH-HHHHHH--HhcCCCEEEEccCCCChhHHH
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQ-AQGWPI--ALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q-~~~i~~--il~g~dvii~apTGsGKTl~~ 182 (779)
|-.+|+++.-.+.+.+.+...- . .|.. .+.+.. +..++.+++.||+|+|||+.+
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v-~--~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELV-Q--YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHH-H--HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH-H--HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 4456788766666666665210 0 0000 000101 124567999999999999654
No 206
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.49 E-value=1.1 Score=47.69 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=13.7
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
.+++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIA 55 (373)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4799999999999654
No 207
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.46 E-value=0.84 Score=48.06 Aligned_cols=47 Identities=15% Similarity=0.140 Sum_probs=29.7
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHH----H-----hcCCCEEEEccCCCChhHHH
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPI----A-----LSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~----i-----l~g~dvii~apTGsGKTl~~ 182 (779)
|-.+|+++.-.+.+.+.+... -.+|. + ...+.+++.||+|+|||..+
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~----------i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEA----------VILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH----------THHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHH----------HHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 445688877677777776531 00111 1 11357999999999999654
No 208
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.40 E-value=0.28 Score=52.50 Aligned_cols=18 Identities=28% Similarity=0.296 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999654
No 209
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.38 E-value=1.6 Score=42.57 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=13.9
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
.+++.||+|+|||...
T Consensus 47 ~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIA 62 (250)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6899999999999654
No 210
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=92.22 E-value=0.19 Score=63.21 Aligned_cols=126 Identities=17% Similarity=0.114 Sum_probs=75.2
Q ss_pred CCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccC
Q psy17912 149 QAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSAT 228 (779)
Q Consensus 149 ~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~ 228 (779)
.++|+-|.+++..- +.+++|.|..|||||.+.+--++..+..... .....++|++++|+..|..+.+.+.......
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~l~~~ 84 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEALEKE 84 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHHHHHH
Confidence 36899999998754 7899999999999997766656655554210 1123379999999999999988876643210
Q ss_pred CceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCC---cCCCCeeEEEEccch
Q psy17912 229 ATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT---INLHRTSYLVLDEAD 285 (779)
Q Consensus 229 ~l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~---~~l~~i~~lViDEaH 285 (779)
... ........+.+..-..+-|+|...|...+-+.. ..+. -.+-|+||..
T Consensus 85 ~~~------~~~~~~~~~~~~~~~~~~i~T~hsf~~~~l~~~~~~~~~~-~~f~~~d~~~ 137 (1232)
T 3u4q_A 85 LVQ------RPGSLHIRRQLSLLNRASISTLHSFCLQVLKKYYYLIDLD-PGFRIADQTE 137 (1232)
T ss_dssp HHH------STTCHHHHHHHHHTTTSEEECHHHHHHHHHHHHGGGTTCC-TTCEECCHHH
T ss_pred hhc------CcchHHHHHHHhccCCCeEEeHHHHHHHHHHhhHHhcCCC-CCCeeCCHHH
Confidence 000 000011111111123578899888876554321 1111 1233778765
No 211
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.08 E-value=0.58 Score=45.64 Aligned_cols=139 Identities=14% Similarity=0.121 Sum_probs=69.9
Q ss_pred CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHH-HHHHHHHHHHHhcccCCceEEEEeCCCC-Chh
Q psy17912 166 CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRE-LAQQIETVANDFGSATATRVACVFGGAP-KGP 243 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~-La~Q~~~~~~~~~~~~~l~v~~~~gg~~-~~~ 243 (779)
-.+++..++|.|||.+++-.++..+.. |.+|+|+.-.+. .-.--...+..+ ++.....--+-. ...
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~--------G~rV~~vQF~Kg~~~~gE~~~l~~L----~v~~~~~g~gf~~~~~ 96 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGH--------GKNVGVVQFIKGTWPNGERNLLEPH----GVEFQVMATGFTWETQ 96 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHT--------TCCEEEEESSCCSSCCHHHHHHGGG----TCEEEECCTTCCCCGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEEeeCCCCCccHHHHHHhC----CcEEEEcccccccCCC
Confidence 378888999999999887777766654 557888843221 000001122222 222211111111 111
Q ss_pred hHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCc--hHHHHHHHhhcCCCCceEEeeccccHHHH
Q psy17912 244 QVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGF--EPQIRKIIGQIRPDRQVLMWSATWPKEVQ 321 (779)
Q Consensus 244 ~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f--~~~l~~il~~l~~~~qilllSAT~~~~v~ 321 (779)
....-.. .....+..... .+.-..+++||+||+-..+..++ .+.+..++...+...-+|+.+--.|+++.
T Consensus 97 ~~~~~~~-------~a~~~l~~a~~-~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~ 168 (196)
T 1g5t_A 97 NREADTA-------ACMAVWQHGKR-MLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDIL 168 (196)
T ss_dssp GHHHHHH-------HHHHHHHHHHH-HTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHH
T ss_pred CcHHHHH-------HHHHHHHHHHH-HHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHH
Confidence 1000000 00111111111 12235789999999987666653 34566666665555566666666677665
Q ss_pred HHH
Q psy17912 322 KLA 324 (779)
Q Consensus 322 ~l~ 324 (779)
+.+
T Consensus 169 e~A 171 (196)
T 1g5t_A 169 DLA 171 (196)
T ss_dssp HHC
T ss_pred HhC
Confidence 544
No 212
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.81 E-value=0.42 Score=54.11 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=25.9
Q ss_pred CCeeEEEEccchhhhcCC--chHHHHHHHhhcCCCCceEEeeccc
Q psy17912 274 HRTSYLVLDEADRMLDMG--FEPQIRKIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~--f~~~l~~il~~l~~~~qilllSAT~ 316 (779)
....+|||||+|.+.... +...+..++.. ....+++.+++.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~ 189 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNER 189 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCT
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCC
Confidence 345799999999886532 22344444443 355677777764
No 213
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.47 E-value=0.29 Score=52.12 Aligned_cols=42 Identities=17% Similarity=0.378 Sum_probs=26.3
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecc
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSAT 315 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT 315 (779)
..+..++|+||+|. ++......+.+++...+++..+++.|..
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~ 173 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDS 173 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCC
Confidence 34678999999998 4433445666666665555555555544
No 214
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.92 E-value=0.95 Score=47.29 Aligned_cols=18 Identities=28% Similarity=0.141 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999553
No 215
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.89 E-value=1.1 Score=46.70 Aligned_cols=39 Identities=15% Similarity=0.275 Sum_probs=23.4
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
....+|||||+|.+... ....+..++...+++..+++.|
T Consensus 109 ~~~~vliiDe~~~l~~~-~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQD-AQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCcCCHH-HHHHHHHHHHhcCCCCeEEEEe
Confidence 45789999999987543 2334555555544445555443
No 216
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=90.77 E-value=0.53 Score=49.39 Aligned_cols=43 Identities=14% Similarity=0.224 Sum_probs=24.7
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEeecccc
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWP 317 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllSAT~~ 317 (779)
.....++||||||.|.... ...+.+.+..-++.. ++++.++-|
T Consensus 80 ~~~~kvviIdead~lt~~a-~naLLk~LEep~~~t-~fIl~t~~~ 122 (305)
T 2gno_A 80 LYTRKYVIVHDCERMTQQA-ANAFLKALEEPPEYA-VIVLNTRRW 122 (305)
T ss_dssp SSSSEEEEETTGGGBCHHH-HHHTHHHHHSCCTTE-EEEEEESCG
T ss_pred cCCceEEEeccHHHhCHHH-HHHHHHHHhCCCCCe-EEEEEECCh
Confidence 4567899999999976432 234445555433333 444444433
No 217
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=90.51 E-value=1.3 Score=47.96 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
.+++++.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 468999999999999654
No 218
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.07 E-value=3.5 Score=44.80 Aligned_cols=54 Identities=20% Similarity=0.258 Sum_probs=30.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHH
Q psy17912 126 PIQHFEECNFPPYIMKKIYEM---GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~ 182 (779)
|-.+|++.+=-+...+.|.+. -+..|.-++... +...+.+++.||+|+|||+.+
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~g---i~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLG---IAQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCCCEEEESCSSSSHHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCceEEeCCCCCCHHHHH
Confidence 557888887555566665521 011111111110 112478999999999999543
No 219
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.02 E-value=1 Score=44.82 Aligned_cols=52 Identities=15% Similarity=0.075 Sum_probs=30.4
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
.|.-+++.||+|+|||...+..+...+.. +..++++.-.. ...++.+.+..+
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~--------~~~v~~~~~e~-~~~~~~~~~~~~ 73 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKM--------GEPGIYVALEE-HPVQVRQNMAQF 73 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHT--------TCCEEEEESSS-CHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhc--------CCeEEEEEccC-CHHHHHHHHHHc
Confidence 56789999999999996544333333221 23466665432 234555555443
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.57 E-value=0.78 Score=45.12 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=16.7
Q ss_pred cCCCEEEEccCCCChhHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~l 184 (779)
.|.-+++.||+|+|||.....
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHH
Confidence 467799999999999965433
No 221
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.25 E-value=2.8 Score=44.25 Aligned_cols=38 Identities=21% Similarity=0.392 Sum_probs=23.9
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEe
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMW 312 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilll 312 (779)
....++|+||+|.+... ....+.+++...+....+++.
T Consensus 109 ~~~~viiiDe~~~l~~~-~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNA-AQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEE
T ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhcCCCCeEEEEE
Confidence 45789999999987543 234455666655445555444
No 222
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=89.08 E-value=1.4 Score=47.19 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~ 183 (779)
.+.+++.||+|+|||+.+-
T Consensus 84 ~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCEEEECSTTSCHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 3579999999999996543
No 223
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.04 E-value=1.3 Score=49.68 Aligned_cols=43 Identities=16% Similarity=0.282 Sum_probs=26.5
Q ss_pred eeEEEEccchhhhcCC----------chHHHHHHHhhcCCCCceEEeeccccH
Q psy17912 276 TSYLVLDEADRMLDMG----------FEPQIRKIIGQIRPDRQVLMWSATWPK 318 (779)
Q Consensus 276 i~~lViDEaH~l~~~~----------f~~~l~~il~~l~~~~qilllSAT~~~ 318 (779)
.++|+|||+|.+.... ....+...+..+.....++++.||-.+
T Consensus 298 p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 298 PAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp SEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred CcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 3689999999886531 112334444444455667777777544
No 224
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=88.42 E-value=1 Score=46.67 Aligned_cols=16 Identities=31% Similarity=0.376 Sum_probs=14.0
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
++++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5999999999999554
No 225
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=88.35 E-value=11 Score=32.16 Aligned_cols=46 Identities=20% Similarity=0.418 Sum_probs=42.0
Q ss_pred EEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhc
Q psy17912 378 TIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRI 423 (779)
Q Consensus 378 vLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~ 423 (779)
.+||....+-..++...++..|..+..++++.+...|.+-++.|..
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHH
Confidence 4788888888899999999999999999999999999999999974
No 226
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=87.37 E-value=2.3 Score=44.76 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=23.7
Q ss_pred CCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 274 HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
....+|++||+|.+... ....+..++........+++.+
T Consensus 132 ~~~~vliiDE~~~l~~~-~~~~Ll~~le~~~~~~~~il~~ 170 (353)
T 1sxj_D 132 PPYKIIILDEADSMTAD-AQSALRRTMETYSGVTRFCLIC 170 (353)
T ss_dssp CSCEEEEETTGGGSCHH-HHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEECCCccCHH-HHHHHHHHHHhcCCCceEEEEe
Confidence 35689999999987543 2334555555544444555544
No 227
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=86.80 E-value=1.9 Score=44.91 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=17.6
Q ss_pred cCCCEEEEccCCCChhHHHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~ 186 (779)
.++.+++++++|+|||......+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA 126 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLA 126 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
Confidence 35678899999999997654433
No 228
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=86.63 E-value=0.54 Score=52.16 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.5
Q ss_pred CCEEEEccCCCChhHHH
Q psy17912 166 CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~ 182 (779)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 36999999999999654
No 229
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=86.46 E-value=1.7 Score=48.09 Aligned_cols=24 Identities=21% Similarity=0.098 Sum_probs=17.6
Q ss_pred cCCCEEEEccCCCChhHHHHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAI 187 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l 187 (779)
.|.-+++.|++|+|||...+..+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~ 225 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQ 225 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456789999999999955444333
No 230
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=86.45 E-value=0.66 Score=50.26 Aligned_cols=17 Identities=29% Similarity=0.438 Sum_probs=14.0
Q ss_pred CCEEE--EccCCCChhHHH
Q psy17912 166 CDLVA--IAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii--~apTGsGKTl~~ 182 (779)
..+++ .||.|+|||...
T Consensus 51 ~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 51 VNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp EEEEEECTTCCSSSHHHHH
T ss_pred CEEEEeCcCcCCCCHHHHH
Confidence 46888 899999999654
No 231
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=86.41 E-value=1.6 Score=45.29 Aligned_cols=38 Identities=18% Similarity=0.296 Sum_probs=22.8
Q ss_pred CeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 275 RTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 275 ~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
+..+|||||+|.+.... ...+.+++...++...+++.|
T Consensus 107 ~~~viiiDe~~~l~~~~-~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGA-QQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGGSCHHH-HHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECcccCCHHH-HHHHHHHHhccCCCceEEEEe
Confidence 47899999999875432 223445555544445555544
No 232
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.35 E-value=12 Score=38.77 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=29.2
Q ss_pred ChHHHHHHHHcCCcCCCCeeEEEEccchhhhc---CCchHHHHHHHhhcCCCCceEEee
Q psy17912 258 TPGRLIDYLEQGTINLHRTSYLVLDEADRMLD---MGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 258 Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~---~~f~~~l~~il~~l~~~~qilllS 313 (779)
+...+++.+..... .--+|||||+|.+.. ..+...+..+.... +...+++.+
T Consensus 123 ~~~~l~~~l~~~~~---~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~-~~~~~i~~g 177 (357)
T 2fna_A 123 SFANLLESFEQASK---DNVIIVLDEAQELVKLRGVNLLPALAYAYDNL-KRIKFIMSG 177 (357)
T ss_dssp CHHHHHHHHHHTCS---SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHC-TTEEEEEEE
T ss_pred hHHHHHHHHHhcCC---CCeEEEEECHHHhhccCchhHHHHHHHHHHcC-CCeEEEEEc
Confidence 44556666644211 245899999998765 34555565555543 234444433
No 233
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=86.03 E-value=2.4 Score=41.33 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=45.8
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNK-----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~-----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
..++||.||++..+.++++.+++. +..+..++|+.+..++...+ ..+..+|+|+|.
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~---~~~~~~i~v~T~ 142 (220)
T 1t6n_A 82 QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL---KKNCPHIVVGTP 142 (220)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH---HHSCCSEEEECH
T ss_pred CEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH---hcCCCCEEEeCH
Confidence 348999999999999999888764 68899999999877665443 446779999996
No 234
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=85.45 E-value=1.1 Score=47.79 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=24.5
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEcc
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAP 209 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~P 209 (779)
.|.-+++.|++|+|||...+- +...+.. .+..|+|++.
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~-ia~~~a~-------~g~~Vl~fSl 82 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMN-MVLSALN-------DDRGVAVFSL 82 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHH-HHHHHHH-------TTCEEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHH-------cCCeEEEEeC
Confidence 456799999999999954433 3333332 1346777764
No 235
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=85.03 E-value=1.6 Score=48.29 Aligned_cols=39 Identities=21% Similarity=0.127 Sum_probs=23.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEcc
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAP 209 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~P 209 (779)
.|.-+++.|++|+|||...+ -+...+... .+..++++..
T Consensus 199 ~G~l~ii~G~pg~GKT~lal-~ia~~~a~~------~g~~vl~~sl 237 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFAL-TIAQNAALK------EGVGVGIYSL 237 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHH-HHHHHHHHT------TCCCEEEEES
T ss_pred CCcEEEEEeCCCCCHHHHHH-HHHHHHHHh------CCCeEEEEEC
Confidence 44568999999999995444 333333321 1334677654
No 236
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=83.69 E-value=3.8 Score=42.55 Aligned_cols=53 Identities=19% Similarity=0.309 Sum_probs=29.2
Q ss_pred CCeeEEEEccchhhh-cCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHH
Q psy17912 274 HRTSYLVLDEADRML-DMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAED 326 (779)
Q Consensus 274 ~~i~~lViDEaH~l~-~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~ 326 (779)
..+++|||||+-.+. +......+..+...+.++.-++.+.|+...+....++.
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~~~~~~~~~~ 232 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARA 232 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCcHHHHHHHHH
Confidence 457899999994332 21123344455555556655666777755444343443
No 237
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.36 E-value=7.4 Score=40.57 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCChhHHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~l 184 (779)
++.+++++++|+|||+....
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~ 123 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGK 123 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHH
Confidence 34578999999999976543
No 238
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.19 E-value=2.1 Score=51.51 Aligned_cols=19 Identities=32% Similarity=0.237 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~ 183 (779)
..+++++||+|+|||....
T Consensus 191 ~~~vlL~G~pG~GKT~la~ 209 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVE 209 (854)
T ss_dssp CCCCEEEECTTSCHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3579999999999996543
No 239
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=83.14 E-value=5.5 Score=41.66 Aligned_cols=49 Identities=10% Similarity=-0.023 Sum_probs=28.6
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVA 221 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~ 221 (779)
.|.-+++.|++|+|||...+- +...+..+ +..+++++.- +-..|+...+
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~-ia~~~a~~-------g~~vl~~slE-~s~~~l~~R~ 115 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALK-QAKNMSDN-------DDVVNLHSLE-MGKKENIKRL 115 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHH-HHHHHHTT-------TCEEEEEESS-SCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHH-HHHHHHHc-------CCeEEEEECC-CCHHHHHHHH
Confidence 566799999999999954433 33333321 2467777643 2233444333
No 240
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=82.68 E-value=0.94 Score=45.18 Aligned_cols=23 Identities=26% Similarity=0.213 Sum_probs=18.2
Q ss_pred hcCCCEEEEccCCCChhHHHHHH
Q psy17912 163 LSGCDLVAIAKTGSGKTLGYIAP 185 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~~lp 185 (779)
..|.-+.+.||+|+|||+.....
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i 50 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHH
Confidence 46788999999999999655433
No 241
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=82.31 E-value=5.6 Score=40.58 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=19.5
Q ss_pred HhcCCCEEEEccCCCChhHHHHHHH
Q psy17912 162 ALSGCDLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~~~lp~ 186 (779)
+..|.-+++.||+|+|||+.....+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~ 51 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLA 51 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4577889999999999996654433
No 242
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=82.22 E-value=2.1 Score=55.58 Aligned_cols=40 Identities=18% Similarity=0.124 Sum_probs=28.8
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRE 212 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~ 212 (779)
++++++.+|+|+|||..+...+..... .+.+++|+...-.
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~--------~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQR--------EGKTCAFIDAEHA 1466 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHT--------TTCCEEEECTTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH--------cCCcEEEEEcccc
Confidence 689999999999999776555443332 2557888876643
No 243
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=81.83 E-value=4.7 Score=40.05 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=46.1
Q ss_pred CCCcEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRN----KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~----~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
.+.++||.||++..+.++++.+++ .++.+..++|+.+..++...+.. ..+|+|+|+
T Consensus 101 ~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----~~~I~v~Tp 160 (242)
T 3fe2_A 101 DGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER----GVEICIATP 160 (242)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH----CCSEEEECH
T ss_pred CCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC----CCCEEEECH
Confidence 356799999999999998887765 47899999999998877665542 588999996
No 244
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=81.73 E-value=7.7 Score=37.72 Aligned_cols=19 Identities=26% Similarity=0.134 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.|.-+.+.+|+|+|||...
T Consensus 24 ~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp SSEEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5667999999999999554
No 245
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=81.17 E-value=1.7 Score=39.73 Aligned_cols=21 Identities=14% Similarity=-0.010 Sum_probs=17.3
Q ss_pred HHhcCCCEEEEccCCCChhHH
Q psy17912 161 IALSGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 161 ~il~g~dvii~apTGsGKTl~ 181 (779)
.+..+.++++.||+|+|||..
T Consensus 23 ~~~~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 23 AAKRTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp HHTCSSCEEEEEETTCCHHHH
T ss_pred HhCCCCcEEEECCCCccHHHH
Confidence 345678999999999999954
No 246
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=80.94 E-value=1.9 Score=42.91 Aligned_cols=53 Identities=19% Similarity=0.176 Sum_probs=30.2
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~ 224 (779)
.|.-+++.|++|+|||...+-.+...+... +..++++.-. +-..++.+.+..+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~-------~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEY-------GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHH-------CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhc-------CCCceeeccc-CCHHHHHHHHHHc
Confidence 467899999999999954443333333331 2246666533 2344444444443
No 247
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=80.72 E-value=9.4 Score=37.46 Aligned_cols=22 Identities=18% Similarity=0.052 Sum_probs=17.4
Q ss_pred cCCCEEEEccCCCChhHHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAP 185 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp 185 (779)
.|.-+++.+|+|+|||......
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l 44 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTL 44 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHH
Confidence 5678999999999999655443
No 248
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=80.22 E-value=1.3 Score=40.53 Aligned_cols=21 Identities=14% Similarity=0.254 Sum_probs=17.5
Q ss_pred HhcCCCEEEEccCCCChhHHH
Q psy17912 162 ALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~~ 182 (779)
...+.++++.||+|+|||..+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 346779999999999999654
No 249
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=80.16 E-value=5.3 Score=40.07 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=45.4
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
...++||.+|++..+.++++.+++. ++.+..++|+.+..++...+. +..+|+|+|.
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~I~v~Tp 169 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA----KKPHIIIATP 169 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH----TCCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc----CCCCEEEECH
Confidence 3467999999999999999888764 788999999998766655443 5789999996
No 250
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=79.62 E-value=2 Score=48.74 Aligned_cols=19 Identities=32% Similarity=0.195 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.+..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999553
No 251
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=79.52 E-value=4.5 Score=39.70 Aligned_cols=56 Identities=11% Similarity=0.228 Sum_probs=40.8
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC---CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK---GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~---g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
.+.++||.+|++..+.++++.+++. ++.+..++|+.+..++...+. ...+|+|+|+
T Consensus 93 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~Tp 151 (228)
T 3iuy_A 93 NGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDIS----KGVDIIIATP 151 (228)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHH----SCCSEEEECH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhc----CCCCEEEECH
Confidence 4678999999999999999999874 678999999987665544433 3589999996
No 252
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=79.42 E-value=7.4 Score=45.95 Aligned_cols=20 Identities=20% Similarity=0.185 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCChhHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~ 183 (779)
...++++.||+|+|||....
T Consensus 206 ~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHH
Confidence 34689999999999996543
No 253
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=79.10 E-value=1 Score=46.03 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=17.2
Q ss_pred HhcCCCEEEEccCCCChhHHH
Q psy17912 162 ALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~~ 182 (779)
+..|.-++++||||||||...
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 456778999999999999653
No 254
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=78.30 E-value=2.8 Score=51.38 Aligned_cols=73 Identities=11% Similarity=0.074 Sum_probs=44.5
Q ss_pred ccchhHHHHHHHHHhccC-CCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 356 EHEKDYKLQGLLSQIGSE-RTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 356 ~~~k~~~L~~ll~~i~~~-~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
...|-.....++..+... ...++||.|+++..+.++.+.+...+.. .+.++.+..+... .+..+..+|+|+|.
T Consensus 310 GSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~--~v~~~~s~~~l~~---~L~~~~~~IiVtTi 383 (1038)
T 2w00_A 310 GSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKEYQRFSPD--SVNGSENTAGLKR---NLDKDDNKIIVTTI 383 (1038)
T ss_dssp TSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHHHHTTSTT--CSSSSCCCHHHHH---HHHCSSCCEEEEEH
T ss_pred CCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHHHHHhccc--ccccccCHHHHHH---HhcCCCCCEEEEEH
Confidence 334544444444443222 2368999999999999999998875432 2234444333322 23446789999995
No 255
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=78.07 E-value=4.2 Score=40.17 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=42.6
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
.+.++||.+|++..+.++++.++.. ++.+..++|+.+..+....+ +..+|+|+|.
T Consensus 96 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp 154 (236)
T 2pl3_A 96 DGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-----NNINILVCTP 154 (236)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-----TTCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-----CCCCEEEECH
Confidence 4678999999999999999998864 47899999998765544433 3689999996
No 256
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=78.00 E-value=5.9 Score=44.19 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=38.4
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcc
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~ 226 (779)
.+....+.+-||||||++ +..+.. .. +..+|||+|+...|.++++.++.+..
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~~--~~-------~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIAE--RH-------AGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHHH--HS-------SSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHH--HHHHHH--Hh-------CCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 355688999999999954 222221 11 12379999999999999999999864
No 257
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=77.12 E-value=4.2 Score=40.04 Aligned_cols=66 Identities=15% Similarity=0.158 Sum_probs=49.7
Q ss_pred HHHHHHHhcc-CCCCcEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 363 LQGLLSQIGS-ERTSKTIIFVETKRKADDITRSVRNK-----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 363 L~~ll~~i~~-~~~~kvLVF~~s~~~ae~L~~~L~~~-----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
+..++..+.. ....++||.||++..+.++++.++.. ++.+..++|+.+..++...+ ...+|+|+|.
T Consensus 79 ~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp 150 (230)
T 2oxc_A 79 STIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-----KKCHIAVGSP 150 (230)
T ss_dssp HHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-----TSCSEEEECH
T ss_pred HHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-----cCCCEEEECH
Confidence 3344444432 24578999999999999999998763 67899999999887665543 2579999997
No 258
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=77.01 E-value=2.4 Score=46.61 Aligned_cols=54 Identities=22% Similarity=0.381 Sum_probs=28.7
Q ss_pred CCeeEEEEccchhhhcC-CchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHh
Q psy17912 274 HRTSYLVLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDF 327 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~ 327 (779)
..+++||||.+-.+... .+...+..+.....++.-++.+.|+...+....+..+
T Consensus 179 ~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~~~~~~~ 233 (432)
T 2v3c_C 179 KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAGIQAKAF 233 (432)
T ss_dssp SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHHHHHHHH
T ss_pred hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHHHHHHHH
Confidence 67889999999764311 1222232333333455555666777654444444443
No 259
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=75.65 E-value=4.2 Score=42.68 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=31.1
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHH-HHHHHHHHHHh
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTREL-AQQIETVANDF 224 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~L-a~Q~~~~~~~~ 224 (779)
.|.-+++.||+|+|||...+..+.. +.... ...+.+..++++.-...+ ..++.+.++.+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~-~~~~~-~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVN-VQLPP-EKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHH-TTSCG-GGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHH-Hhccc-ccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999999554433332 21110 001113467777654332 34444444444
No 260
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=75.61 E-value=16 Score=39.94 Aligned_cols=54 Identities=19% Similarity=0.288 Sum_probs=29.7
Q ss_pred CCeeEEEEccchhhhcC-CchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHh
Q psy17912 274 HRTSYLVLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDF 327 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~ 327 (779)
..+++||||=+-++... .....+..+...+.++.-++.+.|+...+....++.+
T Consensus 179 ~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tgq~av~~a~~f 233 (425)
T 2ffh_A 179 EARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQEALSVARAF 233 (425)
T ss_dssp TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHH
T ss_pred CCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccchHHHHHHHHHH
Confidence 45789999966443211 1223344445555566667777777554444444444
No 261
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=75.61 E-value=6.4 Score=46.71 Aligned_cols=16 Identities=31% Similarity=0.428 Sum_probs=14.2
Q ss_pred CCEEEEccCCCChhHH
Q psy17912 166 CDLVAIAKTGSGKTLG 181 (779)
Q Consensus 166 ~dvii~apTGsGKTl~ 181 (779)
+.+++.||.|+|||+.
T Consensus 239 ~GILL~GPPGTGKT~L 254 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLI 254 (806)
T ss_dssp CEEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5799999999999954
No 262
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=75.60 E-value=10 Score=39.83 Aligned_cols=54 Identities=17% Similarity=0.247 Sum_probs=37.1
Q ss_pred CeeEEEEccchhhh-cCCchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHHhc
Q psy17912 275 RTSYLVLDEADRML-DMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFL 328 (779)
Q Consensus 275 ~i~~lViDEaH~l~-~~~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~~l 328 (779)
..+++++|.+-+.. +......+..+...+.++..++++.++...++...++.+.
T Consensus 211 ~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 211 GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 35678899887543 2234456666666777888888999988777666666554
No 263
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=75.25 E-value=4.6 Score=38.69 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHhcC--CCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCC
Q psy17912 152 TAIQAQGWPIALSG--CDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229 (779)
Q Consensus 152 ~~~Q~~~i~~il~g--~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~ 229 (779)
.+-|..++..++.. +-.++.++-|++||...+..++..... .|..+.+|+|+..-..... +..+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~~-------~Gr~V~vLAp~~~s~~~l~-------~~~~ 101 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMARE-------QGREVQIIAADRRSQMNMK-------QDER 101 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHHH-------TTCCEEEECSTTHHHHHHS-------CTTT
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHHHHHHh-------cCeEEEEEcCchHHHHHHH-------hhcC
Confidence 46788888888744 457888999999998765555444433 3668999999987655322 2212
Q ss_pred ceEEEEeCCCCChhhHHHhhcCCeEEEeChHHHHHHHHcCCcCCCCeeEEEEccchhhhcCCchHHHHHHHhh-cCCCCc
Q psy17912 230 TRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQ-IRPDRQ 308 (779)
Q Consensus 230 l~v~~~~gg~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~-l~~~~q 308 (779)
+.- +++ +. ..+......|..=+++|||||-.|.- ..+..++.. ...+.|
T Consensus 102 l~~--------------------~t~-t~-----~~ll~~~~~~tp~s~lIVD~AekLS~----kE~~~Lld~A~~~naq 151 (189)
T 2l8b_A 102 LSG--------------------ELI-TG-----RRQLLEGMAFTPGSTVIVDQGEKLSL----KETLTLLDGAARHNVQ 151 (189)
T ss_dssp CSS--------------------CSS-ST-----TTTTTTSCCCCCCCEEEEEESSSHHH----HHHHHHHHHHHHTTCC
T ss_pred cCc--------------------cee-eh-----hhhhcCCCCCCCCCEEEEechhhcCH----HHHHHHHHHHHhcCCE
Confidence 110 000 00 11112222233445899999998773 344444443 345688
Q ss_pred eEEeecc
Q psy17912 309 VLMWSAT 315 (779)
Q Consensus 309 illlSAT 315 (779)
+|++--+
T Consensus 152 vvll~~~ 158 (189)
T 2l8b_A 152 VLITDSG 158 (189)
T ss_dssp EEEEESS
T ss_pred EEEeCCc
Confidence 8887544
No 264
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=75.22 E-value=2.7 Score=44.94 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCCChhHH
Q psy17912 164 SGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~ 181 (779)
.+..++++||||||||+.
T Consensus 122 ~~g~i~I~GptGSGKTTl 139 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT 139 (356)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 455789999999999954
No 265
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=75.01 E-value=3.8 Score=41.11 Aligned_cols=44 Identities=16% Similarity=0.049 Sum_probs=28.4
Q ss_pred CCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh-----------cCCCEEEEccCCCChhHHH
Q psy17912 127 IQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIAL-----------SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 127 i~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il-----------~g~dvii~apTGsGKTl~~ 182 (779)
-..|+++.-.+.+.+.+.. .+..+. ..+.+++.||+|+|||..+
T Consensus 8 ~~~~~~i~G~~~~~~~l~~------------~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 8 KTTFADVAGCDEAKEEVAE------------LVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCCGGGSCSCHHHHHHTHH------------HHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHH
T ss_pred CCCHHHhcCcHHHHHHHHH------------HHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHH
Confidence 3567777666666666652 221111 2357999999999999554
No 266
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.82 E-value=3.4 Score=45.44 Aligned_cols=55 Identities=15% Similarity=0.231 Sum_probs=33.9
Q ss_pred CCCCCCCcCCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHH
Q psy17912 124 PRPIQHFEECNFPPYIMKKIYEM---GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 124 p~pi~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~ 181 (779)
.+|-.+|++.+--+...+.|.+. -+..|.-++... +.-.+.+++.||+|+|||+.
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g---~~~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMG---IRAPKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHC---CCCCCEEEEESCTTSSHHHH
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeeEEECcCCCCHHHH
Confidence 45678899998777777777631 111121111111 11246899999999999955
No 267
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=74.69 E-value=8.8 Score=45.33 Aligned_cols=17 Identities=29% Similarity=0.288 Sum_probs=14.4
Q ss_pred CEEEEccCCCChhHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 167 dvii~apTGsGKTl~~~ 183 (779)
++++.||||+|||..+-
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ 539 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELAR 539 (758)
T ss_dssp EEEEESCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 49999999999996543
No 268
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=74.05 E-value=3.4 Score=45.26 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=14.5
Q ss_pred cCCCEEEEccCCCChhHH
Q psy17912 164 SGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~ 181 (779)
.+.-++++||||||||+.
T Consensus 166 ~ggii~I~GpnGSGKTTl 183 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT 183 (418)
T ss_dssp SSEEEEEECSTTSCHHHH
T ss_pred cCCeEEEECCCCCCHHHH
Confidence 344688999999999954
No 269
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=73.63 E-value=9.1 Score=36.55 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=44.6
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC--CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK--GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~--g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
...++||.||++..+.++++.+++. .+.+..++|+.+..+....+. ...+|+|+|.
T Consensus 71 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~v~T~ 128 (207)
T 2gxq_A 71 RKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALL----RGADAVVATP 128 (207)
T ss_dssp CCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHH----HCCSEEEECH
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhh----CCCCEEEECH
Confidence 4578999999999999999999875 467889999987655544433 2588999996
No 270
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=73.20 E-value=3.3 Score=45.37 Aligned_cols=43 Identities=16% Similarity=0.240 Sum_probs=31.0
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQ 215 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~ 215 (779)
..++++.|+||+|||... .+++..+... +..++|+=|.-++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~-~~li~~~~~~-------g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL-RELAYTGLLR-------GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGCEEEEECTTSSHHHHH-HHHHHHHHHT-------TCEEEEEEETTHHHH
T ss_pred cceEEEECCCCCCHHHHH-HHHHHHHHHC-------CCcEEEEeCCCchhH
Confidence 469999999999999764 3344444331 457888899888754
No 271
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=73.01 E-value=5.2 Score=39.99 Aligned_cols=18 Identities=28% Similarity=0.266 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
.+.+++.||+|+|||..+
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 457999999999999654
No 272
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=71.91 E-value=8.2 Score=38.92 Aligned_cols=56 Identities=14% Similarity=0.122 Sum_probs=44.5
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
.+.++||.+|++..+.++++.+++. +..+..++|+.........+. . ..+|+|+|+
T Consensus 125 ~~~~~lil~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~-~~~Iiv~Tp 184 (262)
T 3ly5_A 125 NGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLG---N-GINIIVATP 184 (262)
T ss_dssp GCCCEEEECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHH---H-CCSEEEECH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhc---C-CCCEEEEcH
Confidence 4678999999999999999988763 577889999988766554433 2 489999996
No 273
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=71.85 E-value=6.3 Score=37.73 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=44.0
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK-----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~-----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
...++||.||++..+.++++.+... +..+..++|+.+..+....+ .+..+|+|+|.
T Consensus 70 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~i~v~T~ 130 (206)
T 1vec_A 70 DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL----DDTVHVVIATP 130 (206)
T ss_dssp CSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT----TSCCSEEEECH
T ss_pred CCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc----CCCCCEEEeCH
Confidence 3467999999999999999888753 67889999998876554332 25688999997
No 274
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=69.59 E-value=5.7 Score=43.64 Aligned_cols=55 Identities=18% Similarity=0.202 Sum_probs=29.2
Q ss_pred CCCCCCcCCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHH
Q psy17912 125 RPIQHFEECNFPPYIMKKIYEM---GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 125 ~pi~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~ 182 (779)
+|-.+|++.+=-+...+.+... -+..|.-++... +.-.+.+++.||+|+|||+.+
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g---~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVG---IKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTSSHHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCeEEEECCCCCcHHHHH
Confidence 3455677776555566655520 000110000000 112368999999999999553
No 275
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=69.49 E-value=4.7 Score=47.86 Aligned_cols=56 Identities=14% Similarity=0.145 Sum_probs=32.4
Q ss_pred CCCCCCcCCCCCHHHHHHHHHc-CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHH
Q psy17912 125 RPIQHFEECNFPPYIMKKIYEM-GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 125 ~pi~~f~~~~l~~~l~~~l~~~-g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~ 181 (779)
.|-.+|++++.-+.+.+.|.+. .+....|.+..-+ .+...+.+++.||.|+|||+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHH
Confidence 4556788888778888877642 1111111100000 011235799999999999954
No 276
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=68.98 E-value=5.5 Score=39.00 Aligned_cols=31 Identities=23% Similarity=0.058 Sum_probs=25.9
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCChhHHH
Q psy17912 152 TAIQAQGWPIALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 152 ~~~Q~~~i~~il~g~dvii~apTGsGKTl~~ 182 (779)
+.-|..++..+..|.-+.+.||.|+|||+.+
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 4456778888889999999999999999654
No 277
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=68.60 E-value=6.1 Score=40.45 Aligned_cols=18 Identities=33% Similarity=0.383 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
.+.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999654
No 278
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=68.38 E-value=5.6 Score=41.69 Aligned_cols=47 Identities=13% Similarity=0.082 Sum_probs=29.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHH----HHh-----cCCCEEEEccCCCChhHHH
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWP----IAL-----SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~----~il-----~g~dvii~apTGsGKTl~~ 182 (779)
|-.+|++++=.+.+.+.|... -.+| .+. ..+.+++.||+|+|||+.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~----------v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEA----------VILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHH----------HHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHH----------HHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 445788887666666666521 1111 111 2367999999999999553
No 279
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=68.24 E-value=29 Score=35.75 Aligned_cols=53 Identities=21% Similarity=0.360 Sum_probs=27.7
Q ss_pred CCeeEEEEccchhhh--cC-CchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHH
Q psy17912 274 HRTSYLVLDEADRML--DM-GFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAED 326 (779)
Q Consensus 274 ~~i~~lViDEaH~l~--~~-~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~ 326 (779)
..+++||||=+-++. .. .....+..+.....++.-++.+.|+........++.
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~~~~~~ 234 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASK 234 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHH
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHHHHHHH
Confidence 457899999876533 10 011223333344456666667777654443333433
No 280
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=68.20 E-value=4.3 Score=45.69 Aligned_cols=31 Identities=16% Similarity=0.022 Sum_probs=22.0
Q ss_pred CCHHHHHHHHH-HhcCCCEEEEccCCCChhHH
Q psy17912 151 PTAIQAQGWPI-ALSGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 151 p~~~Q~~~i~~-il~g~dvii~apTGsGKTl~ 181 (779)
+++.+...+.. +..|..++++||||||||+.
T Consensus 245 ~~~~~l~~l~~~v~~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 245 VPSGVLAYLWLAIEHKFSAIVVGETASGKTTT 276 (511)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEEESTTSSHHHH
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 34444444443 45788999999999999954
No 281
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=67.85 E-value=5 Score=40.43 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.6
Q ss_pred hcCCCEEEEccCCCChhHHH
Q psy17912 163 LSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~ 182 (779)
..+.++++.||+|+|||..+
T Consensus 27 ~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHH
T ss_pred CCCCCEEEECCCCCcHHHHH
Confidence 45678999999999999543
No 282
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=67.78 E-value=4.1 Score=41.14 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~ 183 (779)
.+.+++.||+|+|||..+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4579999999999996543
No 283
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=67.44 E-value=9.4 Score=38.09 Aligned_cols=55 Identities=13% Similarity=0.021 Sum_probs=30.1
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh--cCCCEEEEccCCCChhHHH
Q psy17912 125 RPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIAL--SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 125 ~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--~g~dvii~apTGsGKTl~~ 182 (779)
.|-.+|+++.-.+.....+...-.. . -...++..+- -.+.+++.||+|+|||...
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHH
Confidence 3456788876666666665531100 0 0012222221 1245999999999999543
No 284
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=67.22 E-value=11 Score=42.15 Aligned_cols=53 Identities=15% Similarity=0.262 Sum_probs=29.1
Q ss_pred CCeeEEEEccchhhhcC-CchHHHHHHHhhcCCCCceEEeeccccHHHHHHHHH
Q psy17912 274 HRTSYLVLDEADRMLDM-GFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAED 326 (779)
Q Consensus 274 ~~i~~lViDEaH~l~~~-~f~~~l~~il~~l~~~~qilllSAT~~~~v~~l~~~ 326 (779)
..++++|||=+=+.... .+...+..+...+.++.-++.+.|+........+..
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~~a~~ 235 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKA 235 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHHHHHH
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHHHHHH
Confidence 35688999987643211 123334444444456666777888765443333433
No 285
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=67.05 E-value=7 Score=38.97 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=43.2
Q ss_pred CCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
..++||.||++..+.++++.+++. ++.+..++|+.+..+....+ ....+|+|+|.
T Consensus 100 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~~~~~Ivv~Tp 158 (253)
T 1wrb_A 100 YPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREV----QMGCHLLVATP 158 (253)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHH----SSCCSEEEECH
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHh----CCCCCEEEECH
Confidence 468999999999999999888753 57788999998766554433 24689999997
No 286
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=66.99 E-value=7.4 Score=41.14 Aligned_cols=47 Identities=15% Similarity=0.034 Sum_probs=28.5
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhc----CCCEEEEccCCCChhHHHH
Q psy17912 125 RPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALS----GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 125 ~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~----g~dvii~apTGsGKTl~~~ 183 (779)
.|...|+++--.+...+.+. .++..+.. ++.+++.||+|+|||..+.
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~------------~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAG------------VVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CBCSEETTEESCHHHHHHHH------------HHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred CcCcchhhccChHHHHHHHH------------HHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 44445666544455555443 23334433 3579999999999996543
No 287
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.83 E-value=6.2 Score=43.56 Aligned_cols=53 Identities=17% Similarity=0.240 Sum_probs=32.6
Q ss_pred CCCCCCcCCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHH--hcCCCEEEEccCCCChhHHH
Q psy17912 125 RPIQHFEECNFPPYIMKKIYEM---GFQAPTAIQAQGWPIA--LSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 125 ~pi~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~i--l~g~dvii~apTGsGKTl~~ 182 (779)
.|-.+|++.+=-+.+.+.|.+. -+..| +.+..+ .-.+.+|+.||+|+|||+.+
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~p-----e~f~~~Gi~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSP-----ERFATLGIDPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCH-----HHHHHHTCCCCSEEEECSCTTSSHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCH-----HHHHHCCCCCCCceEeeCCCCCcHHHHH
Confidence 4667899988667777777631 01111 111111 13468999999999999543
No 288
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=66.71 E-value=7.3 Score=40.65 Aligned_cols=20 Identities=25% Similarity=-0.016 Sum_probs=15.9
Q ss_pred CCCEEEEccCCCChhHHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~l 184 (779)
|.-+++.|++|+|||...+-
T Consensus 98 g~i~~i~G~~gsGKT~la~~ 117 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQ 117 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 46789999999999965443
No 289
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=66.11 E-value=11 Score=37.29 Aligned_cols=57 Identities=14% Similarity=0.286 Sum_probs=37.5
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
...++||.+|++..+.++++.+++. +..+..++|+.+.... .+.+..+..+|+|+|+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp 157 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNE---MQKLQAEAPHIVVGTP 157 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC----------------CCCSEEEECH
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHH---HHHHhcCCCCEEEECH
Confidence 4568999999999999999998764 5678888888765433 3344556789999995
No 290
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=65.78 E-value=11 Score=39.75 Aligned_cols=65 Identities=12% Similarity=0.128 Sum_probs=33.7
Q ss_pred HHHHHhc-----CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHH-HHHHHHHHHHh
Q psy17912 158 GWPIALS-----GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTREL-AQQIETVANDF 224 (779)
Q Consensus 158 ~i~~il~-----g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~L-a~Q~~~~~~~~ 224 (779)
.+..++. |.-+++.||+|+|||...+..+.. ... +....+.+..++++.-...+ ..++.+.+..+
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~-~~~-~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT-AQL-PGAGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH-TTS-CBTTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH-Hhc-ccccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 3555553 456899999999999544333322 111 11111124567887654431 23344444443
No 291
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.70 E-value=7.9 Score=42.38 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=29.6
Q ss_pred CCCCCCcCCCCCHHHHHHHHHc---CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHH
Q psy17912 125 RPIQHFEECNFPPYIMKKIYEM---GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 125 ~pi~~f~~~~l~~~l~~~l~~~---g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~ 182 (779)
+|-.+|++.+=-+.+.+.+.+. -+..|--++... +.-.+.+++.||+|+|||+.+
T Consensus 166 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g---~~~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 166 KPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIG---IDPPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHC---CCCCCEEEEESCTTTTHHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCceEEEECCCCCCHHHHH
Confidence 3556788886555566655420 000010010000 112357999999999999553
No 292
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=65.34 E-value=4.8 Score=43.35 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=27.9
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTREL 213 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~L 213 (779)
.+.+++++|+||+|||...-..+.. +.. .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~-~~~-------~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLR-EYM-------QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHH-HHT-------TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHH-HHH-------CCCEEEEEeCCcCH
Confidence 4678999999999999654333332 222 24567788777653
No 293
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=64.85 E-value=8.3 Score=40.48 Aligned_cols=42 Identities=12% Similarity=-0.070 Sum_probs=27.0
Q ss_pred CEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELA 214 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La 214 (779)
-+++.+|+|+|||...+-.+.. .... +.+.+++++..-.++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~-~~~~-----g~g~~vlyId~E~s~~ 71 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS-YMRQ-----YPDAVCLFYDSEFGIT 71 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH-HHHH-----CTTCEEEEEESSCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHH-HHhc-----CCCceEEEEeccchhh
Confidence 5889999999999655444333 3321 1244788887765553
No 294
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=64.83 E-value=7.8 Score=42.74 Aligned_cols=47 Identities=13% Similarity=-0.113 Sum_probs=29.9
Q ss_pred CCCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcC----CCEEEEccCCCChhHHHH
Q psy17912 125 RPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSG----CDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 125 ~pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il~g----~dvii~apTGsGKTl~~~ 183 (779)
.|-..|+++.-.+.+.+.+. +.+..+..+ +++++.||+|+|||..+.
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~------------~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACG------------VIVELIKSKKMAGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp CBCSEETTEESCHHHHHHHH------------HHHHHHHTTCCTTCEEEEECCTTSSHHHHHH
T ss_pred ChhhchhhccCHHHHHHHHH------------HHHHHHHhCCCCCCeEEEECCCcCCHHHHHH
Confidence 34445666655566666554 333344433 579999999999996543
No 295
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=64.62 E-value=12 Score=39.83 Aligned_cols=21 Identities=24% Similarity=0.096 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCChhHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~l 184 (779)
.|.-+.+.||+|+|||.....
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHT 150 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345688999999999965443
No 296
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=64.25 E-value=11 Score=36.54 Aligned_cols=66 Identities=23% Similarity=0.220 Sum_probs=41.6
Q ss_pred HHHHHHHhcc-CCCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 363 LQGLLSQIGS-ERTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 363 L~~ll~~i~~-~~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
+..++..+.. ....++||.+|++..+.++++.+... ++.+..++|+.+..++...+ . ..+|+|+|.
T Consensus 69 ~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~--~~~iiv~Tp 139 (224)
T 1qde_A 69 SIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGL---R--DAQIVVGTP 139 (224)
T ss_dssp HHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------C---T--TCSEEEECH
T ss_pred HHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcC---C--CCCEEEECH
Confidence 4444554432 24568999999999999999988753 67889999998765554432 2 378999996
No 297
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=63.83 E-value=11 Score=39.99 Aligned_cols=19 Identities=42% Similarity=0.525 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
...++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4568999999999999654
No 298
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=63.63 E-value=9.3 Score=41.75 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=29.5
Q ss_pred CCCCCCcCCCCCHHHHHHHHH---cCCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHH
Q psy17912 125 RPIQHFEECNFPPYIMKKIYE---MGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 125 ~pi~~f~~~~l~~~l~~~l~~---~g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~ 182 (779)
.|-.+|++.+=-+.+.+.|.+ +-+..|.-++... +.-.+.+++.||+|+|||+.+
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~G---i~~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMG---IKPPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHT---CCCCSEEEEESSTTTTHHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCC---CCCCCCCceECCCCchHHHHH
Confidence 355678887644555555542 0011111111110 112367999999999999543
No 299
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=63.52 E-value=2.3 Score=45.80 Aligned_cols=21 Identities=24% Similarity=0.178 Sum_probs=16.8
Q ss_pred HhcCCCEEEEccCCCChhHHH
Q psy17912 162 ALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~~ 182 (779)
+..|..++++||||||||...
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 345677999999999999553
No 300
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=63.30 E-value=4 Score=38.61 Aligned_cols=19 Identities=21% Similarity=0.174 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.|+-++++||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5677899999999999653
No 301
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=62.30 E-value=5.8 Score=38.63 Aligned_cols=67 Identities=16% Similarity=0.167 Sum_probs=45.5
Q ss_pred HHHHHHHhccC-CCCcEEEEecchhHHHHHHHHHHhC--------CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 363 LQGLLSQIGSE-RTSKTIIFVETKRKADDITRSVRNK--------GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 363 L~~ll~~i~~~-~~~kvLVF~~s~~~ae~L~~~L~~~--------g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
+..++..+... ...++||.||++..+.++++.+++. ++.+..++|+.+..+..+. + ....+|+|+|.
T Consensus 59 ~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~-~~~~~Iiv~Tp 134 (219)
T 1q0u_A 59 LLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK---L-NVQPHIVIGTP 134 (219)
T ss_dssp HHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCC---C-SSCCSEEEECH
T ss_pred HHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHH---c-CCCCCEEEeCH
Confidence 33344443322 3568999999999999999887653 6788899998765433221 1 23578999996
No 302
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=61.86 E-value=4.7 Score=43.08 Aligned_cols=21 Identities=33% Similarity=0.237 Sum_probs=17.8
Q ss_pred HHhcCCCEEEEccCCCChhHH
Q psy17912 161 IALSGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 161 ~il~g~dvii~apTGsGKTl~ 181 (779)
.+..|..++++||||||||..
T Consensus 171 ~i~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 171 AVQLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HHHTTCCEEEEESSSSCHHHH
T ss_pred HHhcCCEEEEECCCCCCHHHH
Confidence 345889999999999999954
No 303
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=61.42 E-value=13 Score=37.68 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=29.4
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHh--cCCCEEEEccCCCChhHHH
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIAL--SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~~i~~il--~g~dvii~apTGsGKTl~~ 182 (779)
|-.+|+++.-.+.+.+.+...-.. . -...++..+- -.+.+++.+|+|+|||...
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~--~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEF--L-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHH--H-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHH--H-HCHHHHHHcCCCCCCeEEEECCCcChHHHHH
Confidence 445677776666666666532100 0 0011222211 1235999999999999543
No 304
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=61.34 E-value=3.7 Score=43.45 Aligned_cols=17 Identities=35% Similarity=0.325 Sum_probs=14.3
Q ss_pred CCCEEEEccCCCChhHH
Q psy17912 165 GCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 165 g~dvii~apTGsGKTl~ 181 (779)
++.++++||||+|||..
T Consensus 40 ~~lIvI~GPTgsGKTtL 56 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRL 56 (339)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 34689999999999954
No 305
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=61.34 E-value=4.5 Score=38.91 Aligned_cols=21 Identities=19% Similarity=0.025 Sum_probs=17.0
Q ss_pred hcCCCEEEEccCCCChhHHHH
Q psy17912 163 LSGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~~ 183 (779)
..++.++++|++|||||...-
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~ 43 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGK 43 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 357789999999999996643
No 306
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=61.25 E-value=4.6 Score=38.96 Aligned_cols=19 Identities=21% Similarity=0.226 Sum_probs=15.0
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.|+-++++||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999654
No 307
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=60.78 E-value=15 Score=37.54 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
..++++.||+|+|||..+
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999654
No 308
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=60.54 E-value=4.7 Score=39.18 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.|+-++++||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4667899999999999653
No 309
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=60.45 E-value=38 Score=37.65 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=28.8
Q ss_pred CeeEEEEccchhhhcC-CchHHHHHHH---hhcC---CCCceEEeeccccHHHHHHHHHhc
Q psy17912 275 RTSYLVLDEADRMLDM-GFEPQIRKII---GQIR---PDRQVLMWSATWPKEVQKLAEDFL 328 (779)
Q Consensus 275 ~i~~lViDEaH~l~~~-~f~~~l~~il---~~l~---~~~qilllSAT~~~~v~~l~~~~l 328 (779)
.+++||||=+-++... .....+.++. +.+. |+.-++.+.||........++.|.
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~ak~f~ 435 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFH 435 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHHHHHHH
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHHHHHHH
Confidence 4578888877543211 1222333333 2222 333477889998766555565553
No 310
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=59.36 E-value=8.1 Score=49.56 Aligned_cols=90 Identities=16% Similarity=0.214 Sum_probs=51.9
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCceEEEEeCCCCChhh
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQ 244 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l~v~~~~gg~~~~~~ 244 (779)
|+.+.+.+|.|||||+.++-. +....+ .+..++++.+--+|.... +++++-.+.
T Consensus 1431 g~~iei~g~~~sGkttl~~~~-~a~~~~-------~g~~~~~i~~e~~~~~~~---~~~~Gv~~~--------------- 1484 (1706)
T 3cmw_A 1431 GRIVEIYGPESSGKTTLTLQV-IAAAQR-------EGKTCAFIDAEHALDPIY---ARKLGVDID--------------- 1484 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHH-HHHHHH-------TTCCEEEECTTSCCCHHH---HHHTTCCGG---------------
T ss_pred CCEEEEEcCCCCCHHHHHHHH-HHHHHh-------cCCeEEEEecCCCCCHHH---HHHcCCCHH---------------
Confidence 367999999999999665443 333333 255788988876665542 455532211
Q ss_pred HHHhhcCCeEEEeCh---HHHHHHHHcCCcCCCCeeEEEEccchhhhc
Q psy17912 245 VKALQTGAEIVIATP---GRLIDYLEQGTINLHRTSYLVLDEADRMLD 289 (779)
Q Consensus 245 ~~~l~~~~~IiV~Tp---e~Ll~~l~~~~~~l~~i~~lViDEaH~l~~ 289 (779)
++++.-| |..+..+.. .+.-..+++||||.+-.+..
T Consensus 1485 --------~l~~~~p~~~e~~l~~~~~-~~~s~~~~~vvvDsv~al~~ 1523 (1706)
T 3cmw_A 1485 --------NLLCSQPDTGEQALEICDA-LARSGAVDVIVVDSVAALTP 1523 (1706)
T ss_dssp --------GCEEECCSSHHHHHHHHHH-HHHHTCCSEEEESCSTTCCC
T ss_pred --------HeEEeCCCcHHHHHHHHHH-HHHcCCCCEEEEccHHhCCc
Confidence 2444444 333332211 01122478999999886654
No 311
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=58.61 E-value=6.4 Score=42.04 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=20.0
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLG 181 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~ 181 (779)
.++..++.|.| +++-|+||||||.+
T Consensus 95 plv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 95 DVVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 45667778887 67789999999955
No 312
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=58.39 E-value=10 Score=40.24 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
..+.+++.||+|+|||..+
T Consensus 116 ~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCSEEEEESSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3468999999999999654
No 313
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=57.92 E-value=5.6 Score=37.48 Aligned_cols=20 Identities=25% Similarity=0.139 Sum_probs=16.3
Q ss_pred CCCEEEEccCCCChhHHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~l 184 (779)
.+.++++|++|||||...-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 56799999999999976543
No 314
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=57.46 E-value=15 Score=29.66 Aligned_cols=47 Identities=6% Similarity=0.244 Sum_probs=35.3
Q ss_pred HHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCe-EEEEcCCCC
Q psy17912 363 LQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWA-AVAIHGNKS 410 (779)
Q Consensus 363 L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~-v~~ihg~~~ 410 (779)
+...+..+...+..+++|||.+-..+...+..|.+.|+. +..+ |++.
T Consensus 29 l~~~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 29 VKERIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp HHHHHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred HHHHHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 444555553345788999999988899999999999985 5556 7754
No 315
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=57.22 E-value=4.8 Score=42.15 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=13.8
Q ss_pred CCEEEEccCCCChhHHH
Q psy17912 166 CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~ 182 (779)
+-++++||||+|||..+
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 45788999999999543
No 316
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=57.09 E-value=5.3 Score=38.99 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=14.9
Q ss_pred cCCCEEEEccCCCChhHH
Q psy17912 164 SGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~ 181 (779)
.++-+++.||||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 456789999999999954
No 317
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=57.00 E-value=5 Score=42.37 Aligned_cols=20 Identities=35% Similarity=0.398 Sum_probs=17.2
Q ss_pred HhcCCCEEEEccCCCChhHH
Q psy17912 162 ALSGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~ 181 (779)
+..|..++++||||||||+.
T Consensus 168 i~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 168 IAIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHHTCCEEEEESTTSCHHHH
T ss_pred ccCCCEEEEECCCCCCHHHH
Confidence 34788999999999999953
No 318
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=56.42 E-value=5.6 Score=38.40 Aligned_cols=21 Identities=24% Similarity=0.086 Sum_probs=17.5
Q ss_pred HhcCCCEEEEccCCCChhHHH
Q psy17912 162 ALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~~ 182 (779)
+..++-++++||+|||||...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHH
T ss_pred cccCCEEEEECCCCCCHHHHH
Confidence 456788999999999999654
No 319
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=56.25 E-value=7.7 Score=40.81 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=19.4
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLG 181 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~ 181 (779)
..+..++.|.| +++-|+||||||.+
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 68 KIVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hhHHHHhCCCeEEEEEECCCCCCCceE
Confidence 44556678887 77889999999955
No 320
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=56.19 E-value=4.6 Score=37.97 Aligned_cols=21 Identities=19% Similarity=0.082 Sum_probs=17.1
Q ss_pred hcCCCEEEEccCCCChhHHHH
Q psy17912 163 LSGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~~ 183 (779)
..++.++++|++|||||....
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 356789999999999996543
No 321
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=55.95 E-value=5.9 Score=37.91 Aligned_cols=19 Identities=26% Similarity=0.230 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.|.-+.+.||+|||||+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5777899999999999653
No 322
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=55.78 E-value=6.2 Score=44.23 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=20.9
Q ss_pred HHHHHHHhcCCCEEEEccCCCChhHH
Q psy17912 156 AQGWPIALSGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 156 ~~~i~~il~g~dvii~apTGsGKTl~ 181 (779)
..++..+..+.++++.||+|+|||..
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~L 57 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSLI 57 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHHH
Confidence 34555667889999999999999954
No 323
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=55.47 E-value=6.1 Score=41.26 Aligned_cols=23 Identities=22% Similarity=0.157 Sum_probs=18.7
Q ss_pred HHHhcCCCEEEEccCCCChhHHH
Q psy17912 160 PIALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 160 ~~il~g~dvii~apTGsGKTl~~ 182 (779)
..+..+.++++.||+|+|||..+
T Consensus 41 ~~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 41 IGICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHHcCCeEEEECCCCCcHHHHH
Confidence 34556889999999999999543
No 324
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=55.37 E-value=10 Score=39.29 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=16.6
Q ss_pred hcCCCEEEEccCCCChhHHH
Q psy17912 163 LSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~ 182 (779)
....++++.||+|+|||..+
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 35678999999999999653
No 325
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=55.29 E-value=8.7 Score=32.38 Aligned_cols=37 Identities=14% Similarity=0.292 Sum_probs=33.1
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCC
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKS 410 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~ 410 (779)
+..+++|||.+-..+...+..|+..|+++..+.||+.
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMD 91 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHH
Confidence 4678999999989999999999999999999999864
No 326
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=55.24 E-value=7.4 Score=41.28 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=19.2
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLG 181 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~ 181 (779)
..+..++.|.| +++-|+||||||.+
T Consensus 85 plv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 85 PLVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred chhhHhhCCCceEEEEecCCCCCCCeE
Confidence 34556678877 67789999999955
No 327
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=55.18 E-value=6 Score=41.35 Aligned_cols=16 Identities=31% Similarity=0.283 Sum_probs=13.3
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
-++++||||+|||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999543
No 328
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=55.06 E-value=6.8 Score=38.03 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.|+-++++||+|+|||...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECcCCCCHHHHH
Confidence 5778999999999999653
No 329
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=54.97 E-value=6.3 Score=37.74 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=16.4
Q ss_pred hcCCCEEEEccCCCChhHHH
Q psy17912 163 LSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~ 182 (779)
..|.-++++||+|||||+..
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35777899999999999653
No 330
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=54.71 E-value=8.5 Score=33.06 Aligned_cols=38 Identities=13% Similarity=0.223 Sum_probs=33.7
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCH
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQ 411 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~ 411 (779)
...+++|||.+-..+...+..|+..|+++..+.||+..
T Consensus 54 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 54 RDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp TTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 46789999999888999999999999999999998653
No 331
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=54.29 E-value=7.8 Score=35.89 Aligned_cols=18 Identities=17% Similarity=0.228 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
+..++++|+.|||||+..
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999653
No 332
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=54.07 E-value=8.8 Score=40.47 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=20.6
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~~ 182 (779)
..+..++.|.| +++-|+||||||.+.
T Consensus 71 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 71 ALVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 46667788887 677899999999553
No 333
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=54.07 E-value=8.3 Score=32.66 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=33.0
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCC
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKS 410 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~ 410 (779)
+..+++|||.+-..+...+..|...|+++..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 4678999999988999999999999999999999864
No 334
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=54.05 E-value=8.1 Score=41.97 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=19.3
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~~ 182 (779)
.++..++.|.| +++-|+||||||.+.
T Consensus 145 plV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 145 PLVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 34455678876 677899999999553
No 335
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=53.99 E-value=5.4 Score=36.70 Aligned_cols=17 Identities=24% Similarity=0.145 Sum_probs=14.0
Q ss_pred CEEEEccCCCChhHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 167 dvii~apTGsGKTl~~~ 183 (779)
.++++|++|||||...-
T Consensus 3 ~I~l~G~~GsGKsT~a~ 19 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAK 19 (179)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996543
No 336
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=53.87 E-value=7.7 Score=36.81 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.1
Q ss_pred CCEEEEccCCCChhHHH
Q psy17912 166 CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~ 182 (779)
+-+.++||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45789999999999653
No 337
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=53.84 E-value=8.5 Score=41.25 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=19.3
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLG 181 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~ 181 (779)
.++..++.|.| +++-|+||||||.+
T Consensus 92 plv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 92 PLVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 44556678887 67789999999955
No 338
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=53.80 E-value=8.9 Score=40.78 Aligned_cols=26 Identities=31% Similarity=0.405 Sum_probs=19.4
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~~ 182 (779)
..+..++.|.| +++-|+||||||.+.
T Consensus 80 plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 80 PLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 34455678876 677899999999653
No 339
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=53.69 E-value=6.6 Score=39.56 Aligned_cols=16 Identities=31% Similarity=-0.006 Sum_probs=13.3
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
.++++||||||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4789999999999654
No 340
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=53.65 E-value=15 Score=40.39 Aligned_cols=51 Identities=12% Similarity=0.045 Sum_probs=29.0
Q ss_pred CCCCCcCCCCCHHHHHHHHHc-----CCCCCCHHHHHHHHHHhcCCCEEEEccCCCChhHHH
Q psy17912 126 PIQHFEECNFPPYIMKKIYEM-----GFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~-----g~~~p~~~Q~~~i~~il~g~dvii~apTGsGKTl~~ 182 (779)
|-.+|+++.-.+.+.+.|... .+..+. + ......+.+++.||+|+|||+.+
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~--~----~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLF--T----GKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTT--S----GGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHh--h----ccCCCCceEEEECCCCCCHHHHH
Confidence 445677776556666666521 000000 0 00112367999999999999554
No 341
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=53.61 E-value=8.6 Score=39.26 Aligned_cols=53 Identities=13% Similarity=0.122 Sum_probs=25.2
Q ss_pred CCCCCcCCCCCHHHHHHHHHcCCCCCCHH-HHHHHHHHh--cCCCEEEEccCCCChhHH
Q psy17912 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAI-QAQGWPIAL--SGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~g~~~p~~~-Q~~~i~~il--~g~dvii~apTGsGKTl~ 181 (779)
|-.+|++++-.+.+.+.+...- ..|+ ..+++..+- -.+.+++.||+|+|||+.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i---~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtL 60 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAI---LAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLL 60 (274)
T ss_dssp -------CCHHHHHHHHHHHHH---THHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHH---HHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHH
Confidence 4567888876666766665310 0111 112222221 124599999999999954
No 342
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=53.57 E-value=9.2 Score=41.51 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=20.6
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~~ 182 (779)
..+..++.|.| +++-|+||||||.+.
T Consensus 131 ~lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 131 QLVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhCCcceEEEEECCCCCCCceEe
Confidence 36677788887 677899999999654
No 343
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=53.41 E-value=9 Score=40.98 Aligned_cols=25 Identities=32% Similarity=0.320 Sum_probs=19.1
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLG 181 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~ 181 (779)
..+..++.|.| +++-|+||||||.+
T Consensus 75 plv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 75 SIVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHHhCCCceEEEeecCCCCCCceE
Confidence 34456678887 67789999999955
No 344
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=53.41 E-value=9 Score=40.63 Aligned_cols=25 Identities=32% Similarity=0.393 Sum_probs=19.4
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLG 181 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~ 181 (779)
.++..++.|.| +++-|+||||||.+
T Consensus 74 plv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 74 PLLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHHhhcCeeEEEecccCCCceEe
Confidence 44556678887 67789999999955
No 345
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=53.39 E-value=9 Score=41.02 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=19.3
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLG 181 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~ 181 (779)
.++..++.|.| +++-|+||||||.+
T Consensus 80 plv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 80 EMLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 34556678887 67789999999954
No 346
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=53.35 E-value=8.8 Score=40.78 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=19.8
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~~ 182 (779)
.++..++.|.| +++-|+||||||.+.
T Consensus 68 plv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 68 PIIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34566778887 677899999999653
No 347
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=53.34 E-value=8.8 Score=40.93 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=19.7
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLG 181 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~ 181 (779)
.++..++.|.| +++-|+||||||.+
T Consensus 94 ~lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 94 DVVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHHhCCCceEEEEECCCCCCCceE
Confidence 45667778887 66779999999955
No 348
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=53.04 E-value=9 Score=40.83 Aligned_cols=26 Identities=31% Similarity=0.432 Sum_probs=19.9
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~~ 182 (779)
.++..++.|.| +++-|+||||||.+.
T Consensus 83 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 83 NILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 45566778887 677899999999553
No 349
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=52.82 E-value=8.9 Score=40.85 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=19.0
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLG 181 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~ 181 (779)
..+..++.|.| +++-|+||||||.+
T Consensus 71 plv~~~l~G~n~tifAYGqTGSGKTyT 97 (355)
T 1goj_A 71 PTVDDILNGYNGTVFAYGQTGAGKSYT 97 (355)
T ss_dssp HHHHHHTTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhCCCcceEEEECCCCCCcceE
Confidence 34456678877 67789999999954
No 350
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=52.44 E-value=9.1 Score=40.79 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=18.6
Q ss_pred HHHHHhcCCC--EEEEccCCCChhHH
Q psy17912 158 GWPIALSGCD--LVAIAKTGSGKTLG 181 (779)
Q Consensus 158 ~i~~il~g~d--vii~apTGsGKTl~ 181 (779)
++..++.|.| +++-|+||||||.+
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyT 122 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHT 122 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceee
Confidence 4455668877 67789999999955
No 351
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=52.38 E-value=7.8 Score=36.10 Aligned_cols=18 Identities=11% Similarity=-0.010 Sum_probs=15.0
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
++.++++|++|||||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999654
No 352
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=52.35 E-value=8.5 Score=37.69 Aligned_cols=21 Identities=24% Similarity=0.102 Sum_probs=16.5
Q ss_pred HhcCCCEEEEccCCCChhHHH
Q psy17912 162 ALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~~ 182 (779)
+..|+-+.++||+|+|||...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHH
Confidence 346888999999999999543
No 353
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=52.29 E-value=6.5 Score=37.18 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=16.4
Q ss_pred HhcCCCEEEEccCCCChhHH
Q psy17912 162 ALSGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~ 181 (779)
+..|..++++||+|||||+.
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34567799999999999964
No 354
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=52.14 E-value=25 Score=37.33 Aligned_cols=18 Identities=44% Similarity=0.564 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999654
No 355
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=52.06 E-value=8.7 Score=41.01 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=19.4
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLG 181 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~ 181 (779)
.++..++.|.| +++-|+||||||.+
T Consensus 79 plv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 79 PILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred HhHHHHhCCCceEEEEeCCCCCCCceE
Confidence 45566778887 67789999999954
No 356
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=51.89 E-value=7.1 Score=37.53 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=13.9
Q ss_pred CCEEEEccCCCChhHH
Q psy17912 166 CDLVAIAKTGSGKTLG 181 (779)
Q Consensus 166 ~dvii~apTGsGKTl~ 181 (779)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 5689999999999954
No 357
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=51.80 E-value=8.2 Score=36.54 Aligned_cols=19 Identities=26% Similarity=0.427 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.+..++++|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999654
No 358
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=51.76 E-value=9.6 Score=32.62 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=32.6
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCC
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKS 410 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~ 410 (779)
+..+++|||.+-..+...+..|.+.|+.+..+.||+.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 4678999999988899999999999999988888863
No 359
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=51.49 E-value=8.2 Score=41.03 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=20.6
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~~ 182 (779)
..+..++.|.| +++-|+||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 46677788887 677899999999654
No 360
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=51.22 E-value=9.3 Score=41.01 Aligned_cols=25 Identities=32% Similarity=0.391 Sum_probs=19.0
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLG 181 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~ 181 (779)
..+..++.|.| +++-|+||||||.+
T Consensus 91 plv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 91 PLIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHHhCCceEEEEeecCCCCCccee
Confidence 44556678877 67789999999954
No 361
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=50.79 E-value=9.6 Score=41.05 Aligned_cols=26 Identities=31% Similarity=0.273 Sum_probs=19.7
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~~ 182 (779)
.++..++.|.| +++-|+||||||.+.
T Consensus 125 plv~~~l~G~N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 125 PLVQTIFEGGKATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp HHHHHHHTTCEEEEEEESCTTSSHHHHH
T ss_pred HHHHHHhcCCceEEEEecCCCCCCCeEe
Confidence 34556678876 677899999999653
No 362
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=50.72 E-value=8.2 Score=41.00 Aligned_cols=26 Identities=38% Similarity=0.494 Sum_probs=20.1
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~~ 182 (779)
..+..++.|.| +++-|+||||||.+.
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 35566778887 677899999999654
No 363
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=50.54 E-value=22 Score=39.46 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=28.7
Q ss_pred CCCCCcCCCCCHHHHHHHHHc--CCCCCCHHHHHHHHHH--hcCCCEEEEccCCCChhHHH
Q psy17912 126 PIQHFEECNFPPYIMKKIYEM--GFQAPTAIQAQGWPIA--LSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 126 pi~~f~~~~l~~~l~~~l~~~--g~~~p~~~Q~~~i~~i--l~g~dvii~apTGsGKTl~~ 182 (779)
+-.+|+++.=.+..++.+... .+..| +.+..+ .-.+.+++.||+|+|||+.+
T Consensus 11 ~~~~f~di~G~~~~~~~l~e~v~~l~~~-----~~~~~~g~~~p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 11 KRVTFKDVGGAEEAIEELKEVVEFLKDP-----SKFNRIGARMPKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CCCCGGGCCSCHHHHHHHHHHHHHHHCT-----HHHHTTTCCCCSEEEEECCTTSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHhhCh-----HHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 345677776566666665521 00011 011111 01356999999999999654
No 364
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=50.23 E-value=27 Score=35.49 Aligned_cols=44 Identities=16% Similarity=-0.000 Sum_probs=28.6
Q ss_pred HHHHHHHHHcCCCCCCHHHHHH-HHHHhcCC-----CEEEEccCCCChhHHHH
Q psy17912 137 PYIMKKIYEMGFQAPTAIQAQG-WPIALSGC-----DLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 137 ~~l~~~l~~~g~~~p~~~Q~~~-i~~il~g~-----dvii~apTGsGKTl~~~ 183 (779)
..+.+-|...|+. |++... +..+++++ .+++.||.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 4677777655544 555333 44555543 49999999999996543
No 365
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=50.05 E-value=11 Score=31.24 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=31.6
Q ss_pred CcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCC
Q psy17912 376 SKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKS 410 (779)
Q Consensus 376 ~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~ 410 (779)
.+++|||.+-..+...+..|...|+.+..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 78999999988899999999999999888889875
No 366
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=49.70 E-value=9 Score=35.98 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
+..+++.|+.|||||+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999654
No 367
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=49.67 E-value=11 Score=40.98 Aligned_cols=26 Identities=38% Similarity=0.459 Sum_probs=20.5
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~~ 182 (779)
..+..++.|.| +++-|+||||||.+.
T Consensus 129 plv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 129 PLIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 46677788887 677799999999553
No 368
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=49.61 E-value=16 Score=37.59 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=45.1
Q ss_pred HHHHHHHHhccC-CCCcEEEEecchhHHHHHHHHHHhC-----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 362 KLQGLLSQIGSE-RTSKTIIFVETKRKADDITRSVRNK-----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 362 ~L~~ll~~i~~~-~~~kvLVF~~s~~~ae~L~~~L~~~-----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
.+..++..+... ...++||.+|++..|.++++.+... ++.+..++|+....... ....+|||+|+
T Consensus 148 ~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~IlV~TP 218 (300)
T 3fmo_B 148 FVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ-------KISEQIVIGTP 218 (300)
T ss_dssp HHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC-------CCCCSEEEECH
T ss_pred HHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh-------cCCCCEEEECH
Confidence 344555555332 3347999999999999998888753 46788888876532221 34678999997
No 369
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=49.53 E-value=9.1 Score=41.00 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=19.8
Q ss_pred HHHHHhcCCC--EEEEccCCCChhHHH
Q psy17912 158 GWPIALSGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 158 ~i~~il~g~d--vii~apTGsGKTl~~ 182 (779)
.+..++.|.| +++-|+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 5667788887 677899999999553
No 370
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=49.44 E-value=8.3 Score=40.52 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=13.6
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
.++++||||||||...
T Consensus 7 ~i~i~GptGsGKTtla 22 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999543
No 371
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=49.34 E-value=11 Score=41.37 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=19.5
Q ss_pred HHHHHHhcCCC--EEEEccCCCChhHHH
Q psy17912 157 QGWPIALSGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 157 ~~i~~il~g~d--vii~apTGsGKTl~~ 182 (779)
.++..++.|.| +++-|+||||||.+.
T Consensus 127 plv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 127 EFLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred hHHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 34455678887 677899999999553
No 372
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=49.21 E-value=16 Score=35.17 Aligned_cols=22 Identities=23% Similarity=0.114 Sum_probs=17.1
Q ss_pred cCCCEEEEccCCCChhHHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAP 185 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp 185 (779)
.|.-+++.||+|+|||......
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l 40 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQT 40 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHH
Confidence 4567899999999999654433
No 373
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=49.19 E-value=6.9 Score=36.81 Aligned_cols=20 Identities=20% Similarity=0.308 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCChhHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~ 183 (779)
.|..++++|+.|||||+..-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 45578999999999996643
No 374
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=48.99 E-value=14 Score=39.71 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=18.9
Q ss_pred HHHHHhcCCC--EEEEccCCCChhHH
Q psy17912 158 GWPIALSGCD--LVAIAKTGSGKTLG 181 (779)
Q Consensus 158 ~i~~il~g~d--vii~apTGsGKTl~ 181 (779)
.+..++.|.| +++-|+||||||.+
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 5566678887 67789999999954
No 375
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=48.53 E-value=16 Score=36.29 Aligned_cols=24 Identities=25% Similarity=0.324 Sum_probs=18.0
Q ss_pred CEEEEccCCCChhHHHHHHHHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYIAPAIVHV 190 (779)
Q Consensus 167 dvii~apTGsGKTl~~~lp~l~~l 190 (779)
++++.++.|+|||..++--+....
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~ 31 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQL 31 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH
Confidence 589999999999977655444433
No 376
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=48.39 E-value=19 Score=48.53 Aligned_cols=49 Identities=18% Similarity=0.194 Sum_probs=32.6
Q ss_pred CCHHHHHHHHHcCCCCCCHHHH----HHHHHHhcCCCEEEEccCCCChhHHHHH
Q psy17912 135 FPPYIMKKIYEMGFQAPTAIQA----QGWPIALSGCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 135 l~~~l~~~l~~~g~~~p~~~Q~----~~i~~il~g~dvii~apTGsGKTl~~~l 184 (779)
+.+.+.+.+.+.++. +.+.+. +....+...+.++++||||||||.++-.
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHHH
Confidence 344556666666664 455442 2334455678899999999999988654
No 377
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=48.25 E-value=6.8 Score=36.71 Aligned_cols=20 Identities=30% Similarity=0.190 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCChhHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~ 183 (779)
.|.-+.++||+|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 45668899999999996543
No 378
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=48.12 E-value=15 Score=37.59 Aligned_cols=18 Identities=28% Similarity=0.217 Sum_probs=14.9
Q ss_pred CCEEEEccCCCChhHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~ 183 (779)
..+++.||+|+|||..+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 369999999999996543
No 379
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=48.11 E-value=9.5 Score=35.09 Aligned_cols=17 Identities=6% Similarity=-0.234 Sum_probs=14.0
Q ss_pred CEEEEccCCCChhHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 167 dvii~apTGsGKTl~~~ 183 (779)
.+++.|+.|||||++.-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996643
No 380
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=48.02 E-value=16 Score=38.06 Aligned_cols=19 Identities=16% Similarity=0.300 Sum_probs=15.6
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
...++++.||+|+|||..+
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 3457999999999999554
No 381
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=47.96 E-value=10 Score=36.63 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=16.6
Q ss_pred HHhcCCCEEEEccCCCChhHHH
Q psy17912 161 IALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 161 ~il~g~dvii~apTGsGKTl~~ 182 (779)
.+..|.-+.+.||+|||||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 5667888999999999999553
No 382
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=47.80 E-value=10 Score=36.35 Aligned_cols=19 Identities=32% Similarity=0.330 Sum_probs=16.1
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.+..++++||.|||||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999654
No 383
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=47.63 E-value=20 Score=31.49 Aligned_cols=36 Identities=11% Similarity=0.251 Sum_probs=31.8
Q ss_pred CcEEEEe-cchhHHHHHHHHHHhCCCeEEEEcCCCCH
Q psy17912 376 SKTIIFV-ETKRKADDITRSVRNKGWAAVAIHGNKSQ 411 (779)
Q Consensus 376 ~kvLVF~-~s~~~ae~L~~~L~~~g~~v~~ihg~~~~ 411 (779)
.+++||| .+-..+..++..|+..|+++..+.||+..
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~ 126 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKA 126 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHH
Confidence 7899999 57778889999999999999999998764
No 384
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=47.46 E-value=63 Score=36.08 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=17.1
Q ss_pred hcCCCEEEEccCCCChhHHHHH
Q psy17912 163 LSGCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~~l 184 (779)
..|.-+++.+|+|+|||.....
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~ 300 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSR 300 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHH
Confidence 3567799999999999965433
No 385
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=47.39 E-value=9.7 Score=41.04 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=18.2
Q ss_pred HHHHhcCCC--EEEEccCCCChhHHH
Q psy17912 159 WPIALSGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 159 i~~il~g~d--vii~apTGsGKTl~~ 182 (779)
+..++.|.| +++-|+||||||.+.
T Consensus 91 v~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 91 LRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHhhcCceeeEeeecCCCCCCCeEe
Confidence 345668877 677899999999553
No 386
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=46.88 E-value=33 Score=41.01 Aligned_cols=54 Identities=11% Similarity=0.037 Sum_probs=45.3
Q ss_pred CCCcEEEEecchhHHHHHHHHHHh----CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRN----KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~----~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
.+..++|.++|+.-|.+.++.+.. .|+.+.++.|+++..+|..+. .++|+++|+
T Consensus 119 ~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~~~~r~~ay------~~DIvyGTp 176 (997)
T 2ipc_A 119 TGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHASTPAERRKAY------LADVTYVTN 176 (997)
T ss_dssp TCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCCHHHHHHHH------TSSEEEEEH
T ss_pred hCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCCHHHHHHHc------CCCEEEECc
Confidence 456899999999999888877764 589999999999988777764 379999996
No 387
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=46.67 E-value=13 Score=37.56 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=17.7
Q ss_pred hcCCCEEEEccCCCChhHHHH
Q psy17912 163 LSGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~~ 183 (779)
+.++.++++|++|||||...-
T Consensus 46 l~g~~i~l~G~~GsGKSTl~~ 66 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVGK 66 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHH
Confidence 358999999999999996643
No 388
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=46.33 E-value=11 Score=35.05 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=13.5
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
-++++|++|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999654
No 389
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=46.13 E-value=18 Score=38.54 Aligned_cols=39 Identities=15% Similarity=0.081 Sum_probs=25.3
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccC
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPT 210 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Pt 210 (779)
.+..+++.+++|+|||...+..+...... +..++++...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~--------g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--------GKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHT--------TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC--------CCeEEEEeCC
Confidence 46779999999999996654444333222 3357777653
No 390
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=46.10 E-value=10 Score=40.16 Aligned_cols=16 Identities=38% Similarity=0.268 Sum_probs=13.6
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
.++++||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999543
No 391
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=45.87 E-value=13 Score=35.12 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=17.5
Q ss_pred HhcCCCEEEEccCCCChhHHHH
Q psy17912 162 ALSGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~~~ 183 (779)
+..+..++++|+.|||||+..-
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~ 27 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCE 27 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHH
Confidence 3456789999999999997643
No 392
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=45.85 E-value=11 Score=37.01 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=16.0
Q ss_pred HHhcCCCEEEEccCCCChhHH
Q psy17912 161 IALSGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 161 ~il~g~dvii~apTGsGKTl~ 181 (779)
.+..|.-++++||.|+|||..
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTL 32 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSL 32 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHH
Confidence 345678899999999999954
No 393
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=45.73 E-value=18 Score=38.41 Aligned_cols=39 Identities=18% Similarity=0.149 Sum_probs=24.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccC
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPT 210 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Pt 210 (779)
.|.-+++.+|+|+|||...+..+...... +..++++.-.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~--------g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAA--------GGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHT--------TCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhC--------CCeEEEEECC
Confidence 45779999999999996544433333221 3356776643
No 394
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=45.51 E-value=9.9 Score=35.35 Aligned_cols=18 Identities=28% Similarity=0.222 Sum_probs=15.1
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
+..++++|+.|||||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 556899999999999654
No 395
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=45.50 E-value=9.8 Score=39.17 Aligned_cols=17 Identities=24% Similarity=0.216 Sum_probs=14.1
Q ss_pred CCEEEEccCCCChhHHH
Q psy17912 166 CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~ 182 (779)
+.+++.||+|+|||..+
T Consensus 37 ~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQC 53 (293)
T ss_dssp SEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46889999999999543
No 396
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=45.25 E-value=30 Score=38.57 Aligned_cols=17 Identities=24% Similarity=0.241 Sum_probs=14.3
Q ss_pred CCEEEEccCCCChhHHH
Q psy17912 166 CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~ 182 (779)
+.+++.+|+|+|||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45999999999999553
No 397
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=45.22 E-value=16 Score=37.26 Aligned_cols=22 Identities=18% Similarity=0.163 Sum_probs=17.4
Q ss_pred hcCCCEEEEccCCCChhHHHHH
Q psy17912 163 LSGCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~~l 184 (779)
..|.-+++.||+|+|||.....
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQ 54 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHH
Confidence 3577899999999999965433
No 398
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=44.94 E-value=8.8 Score=37.96 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=44.4
Q ss_pred HHHHHHHhcc--CCCCcEEEEecchhHHHHHHHHHHhC----CCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 363 LQGLLSQIGS--ERTSKTIIFVETKRKADDITRSVRNK----GWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 363 L~~ll~~i~~--~~~~kvLVF~~s~~~ae~L~~~L~~~----g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
+..++..+.. ..+.++||.+|++..+.++++.+.+. ++.+..++|+.....+ ......+..+|+|+|+
T Consensus 84 ~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp 157 (245)
T 3dkp_A 84 SIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKK---FGPKSSKKFDILVTTP 157 (245)
T ss_dssp HHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTT---TSTTSCCCCCEEEECH
T ss_pred HHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHH---hhhhhcCCCCEEEECH
Confidence 4444554432 23557999999999999999998864 6677777765322211 1122345678999995
No 399
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=44.43 E-value=11 Score=36.22 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=16.4
Q ss_pred hcCCCEEEEccCCCChhHHH
Q psy17912 163 LSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 163 l~g~dvii~apTGsGKTl~~ 182 (779)
..+..+++.||.|||||...
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35677889999999999664
No 400
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=44.32 E-value=11 Score=40.99 Aligned_cols=16 Identities=31% Similarity=0.289 Sum_probs=13.1
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
-++|+||||+|||..+
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 4788999999999543
No 401
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=44.30 E-value=12 Score=34.53 Aligned_cols=19 Identities=37% Similarity=0.253 Sum_probs=15.8
Q ss_pred CCEEEEccCCCChhHHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~l 184 (779)
+++++.++.|||||.+.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 5799999999999976543
No 402
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=43.45 E-value=16 Score=31.20 Aligned_cols=37 Identities=8% Similarity=0.312 Sum_probs=32.2
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCCe-EEEEcCCCC
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGWA-AVAIHGNKS 410 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~~-v~~ihg~~~ 410 (779)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~ 88 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLA 88 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHH
Confidence 4578999999988899999999999995 888888864
No 403
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=43.07 E-value=18 Score=40.49 Aligned_cols=27 Identities=26% Similarity=0.305 Sum_probs=19.1
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHV 190 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l 190 (779)
.+.++++.|+||||||.+.-..++..+
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999965443333333
No 404
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=43.06 E-value=11 Score=35.84 Aligned_cols=19 Identities=32% Similarity=0.232 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.+.-+++.|+.|||||+..
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4667899999999999664
No 405
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=42.96 E-value=9.6 Score=37.47 Aligned_cols=19 Identities=37% Similarity=0.359 Sum_probs=12.0
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.|.-+.++||+|||||...
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5777899999999999553
No 406
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=42.81 E-value=2.2e+02 Score=26.73 Aligned_cols=125 Identities=13% Similarity=0.023 Sum_probs=49.9
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhccC-----CCCCCCCCEEEEEccCHHHHHHHHHHHHHhcccCCc-eEEEEeCC
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQR-----PLRSGEGPIVLVLAPTRELAQQIETVANDFGSATAT-RVACVFGG 238 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~~~-----~~~~~~~~~vLil~Ptr~La~Q~~~~~~~~~~~~~l-~v~~~~gg 238 (779)
|-.+-+.+..|-|=|+.+.+|+........ ......+.++||+-........+...+... ++ .+.
T Consensus 20 gG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~----g~~~v~----- 90 (206)
T 3mm4_A 20 MASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKM----GVSEVE----- 90 (206)
T ss_dssp -----------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHT----TCSEEE-----
T ss_pred CCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHc----CCCeee-----
Confidence 445667788899999888888743222111 111223557888888877776666666554 33 222
Q ss_pred CCChhhHHHhhcCCeEEEeChHHHHHHHHcC--------CcCCCCeeEEEEccchhhhcCCchHHHHHHHhh---cCCCC
Q psy17912 239 APKGPQVKALQTGAEIVIATPGRLIDYLEQG--------TINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQ---IRPDR 307 (779)
Q Consensus 239 ~~~~~~~~~l~~~~~IiV~Tpe~Ll~~l~~~--------~~~l~~i~~lViDEaH~l~~~~f~~~l~~il~~---l~~~~ 307 (779)
.+.+....++.+... ...-..+++||+|=. |.+.+-...+..+... ..++.
T Consensus 91 ----------------~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~--lp~~~G~el~~~lr~~~~~~~~~~ 152 (206)
T 3mm4_A 91 ----------------QCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQ--MPEMDGYEATREIRKVEKSYGVRT 152 (206)
T ss_dssp ----------------EESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESC--CSSSCHHHHHHHHHHHHHTTTCCC
T ss_pred ----------------eeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCC--CCCCCHHHHHHHHHhhhhhcCCCC
Confidence 223444455555331 112235789999832 3333212223333222 24788
Q ss_pred ceEEeeccc
Q psy17912 308 QVLMWSATW 316 (779)
Q Consensus 308 qilllSAT~ 316 (779)
++|++|+..
T Consensus 153 piI~ls~~~ 161 (206)
T 3mm4_A 153 PIIAVSGHD 161 (206)
T ss_dssp CEEEEESSC
T ss_pred cEEEEECCC
Confidence 999999976
No 407
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=42.55 E-value=35 Score=29.11 Aligned_cols=38 Identities=21% Similarity=0.407 Sum_probs=32.7
Q ss_pred CCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCC
Q psy17912 373 ERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKS 410 (779)
Q Consensus 373 ~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~ 410 (779)
.+..+++|||.+-..+...+..|...|+....+.||+.
T Consensus 54 ~~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~ 91 (110)
T 2k0z_A 54 HKDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVY 91 (110)
T ss_dssp CSSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGG
T ss_pred CCCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHH
Confidence 35688999999988999999999999986678889875
No 408
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=42.34 E-value=15 Score=39.14 Aligned_cols=19 Identities=47% Similarity=0.714 Sum_probs=15.3
Q ss_pred cCCC--EEEEccCCCChhHHH
Q psy17912 164 SGCD--LVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~d--vii~apTGsGKTl~~ 182 (779)
.|.+ +++-|+||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 4776 688999999999543
No 409
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=42.21 E-value=13 Score=36.61 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCChhHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~ 183 (779)
.+..+++.|++|||||...-
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 44679999999999996643
No 410
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=41.98 E-value=20 Score=38.14 Aligned_cols=41 Identities=20% Similarity=0.211 Sum_probs=25.9
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRE 212 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~ 212 (779)
.|.-+++.+|+|+|||.. ++.++..+... +..++++.....
T Consensus 60 ~G~i~~I~GppGsGKSTL-al~la~~~~~~-------gg~VlyId~E~s 100 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTL-ALHAIAEAQKM-------GGVAAFIDAEHA 100 (356)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHHHHT-------TCCEEEEESSCC
T ss_pred CCcEEEEECCCCCCHHHH-HHHHHHHHHhc-------CCeEEEEecccc
Confidence 356789999999999954 34444333331 335777765443
No 411
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=41.97 E-value=15 Score=34.19 Aligned_cols=18 Identities=33% Similarity=0.255 Sum_probs=14.9
Q ss_pred CCEEEEccCCCChhHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~ 183 (779)
+.+++.++.|||||...-
T Consensus 5 ~~i~i~G~~GsGKsTla~ 22 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLAR 22 (175)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 368999999999997643
No 412
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=41.85 E-value=20 Score=39.30 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=24.5
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEcc
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAP 209 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~P 209 (779)
.|.-+++.|++|+|||...+- +...+... +..++|++.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~-ia~~~a~~-------g~~vl~fSl 233 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALK-QAKNMSDN-------DDVVNLHSL 233 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHH-HHHHHHHT-------TCEEEEECS
T ss_pred CCcEEEEEeCCCCChHHHHHH-HHHHHHHc-------CCEEEEEEC
Confidence 456699999999999954443 33333331 336777764
No 413
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=41.85 E-value=17 Score=33.28 Aligned_cols=16 Identities=31% Similarity=0.299 Sum_probs=13.3
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
-.++.+|+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4688999999999653
No 414
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=41.76 E-value=19 Score=34.65 Aligned_cols=31 Identities=16% Similarity=0.069 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHhcCCCEEEEccCCCChhHHHH
Q psy17912 152 TAIQAQGWPIALSGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 152 ~~~Q~~~i~~il~g~dvii~apTGsGKTl~~~ 183 (779)
++.+... ..+..+..+++.|+.|||||...-
T Consensus 13 ~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~~~ 43 (211)
T 1m7g_A 13 TRSERTE-LRNQRGLTIWLTGLSASGKSTLAV 43 (211)
T ss_dssp CHHHHHH-HHTSSCEEEEEECSTTSSHHHHHH
T ss_pred CHHHhhc-ccCCCCCEEEEECCCCCCHHHHHH
Confidence 3444444 345567789999999999996543
No 415
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=41.61 E-value=15 Score=34.30 Aligned_cols=16 Identities=25% Similarity=0.123 Sum_probs=13.4
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
-.+++||+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5689999999999553
No 416
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=41.54 E-value=67 Score=31.54 Aligned_cols=46 Identities=22% Similarity=0.207 Sum_probs=39.1
Q ss_pred CCcEEEEecchhHHHHHHHHHHhCCCe-EEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 375 TSKTIIFVETKRKADDITRSVRNKGWA-AVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 375 ~~kvLVF~~s~~~ae~L~~~L~~~g~~-v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
..++||+|+++..+.++.+.+.+.+.. +..++|+.. ...+|+|+|.
T Consensus 133 ~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~-------------~~~~i~v~T~ 179 (237)
T 2fz4_A 133 STPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK-------------ELKPLTVSTY 179 (237)
T ss_dssp CSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB-------------CCCSEEEEEH
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC-------------CcCCEEEEeH
Confidence 678999999999999999999888888 899998864 2567888884
No 417
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=41.07 E-value=21 Score=37.28 Aligned_cols=20 Identities=20% Similarity=0.220 Sum_probs=15.4
Q ss_pred CCCEEEEccCCCChhHHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~l 184 (779)
++.+++++++|+|||+....
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~ 124 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAK 124 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 34578889999999976543
No 418
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=41.06 E-value=14 Score=35.28 Aligned_cols=18 Identities=28% Similarity=0.291 Sum_probs=15.0
Q ss_pred CCEEEEccCCCChhHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~ 183 (779)
..++++|+.|||||+..-
T Consensus 19 ~~I~l~G~~GsGKSTla~ 36 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGE 36 (202)
T ss_dssp SCEEEECSTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 479999999999996543
No 419
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=40.80 E-value=13 Score=34.96 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~ 183 (779)
+.-+++.|++|||||+..-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3468899999999997653
No 420
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=40.79 E-value=14 Score=34.70 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=13.8
Q ss_pred CCEEEEccCCCChhHHH
Q psy17912 166 CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~ 182 (779)
.-++++||+|+|||+..
T Consensus 3 ~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35788999999999654
No 421
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=40.72 E-value=13 Score=34.99 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
+.-++++|+.|||||+..
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456889999999999654
No 422
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=40.70 E-value=15 Score=34.70 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=15.9
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.+.-++++|++|||||...
T Consensus 11 ~~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp HSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4567999999999999654
No 423
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=40.61 E-value=18 Score=32.79 Aligned_cols=37 Identities=11% Similarity=0.147 Sum_probs=32.5
Q ss_pred CCCcEEEEecch--hHHHHHHHHHHhCCCeEEEEcCCCC
Q psy17912 374 RTSKTIIFVETK--RKADDITRSVRNKGWAAVAIHGNKS 410 (779)
Q Consensus 374 ~~~kvLVF~~s~--~~ae~L~~~L~~~g~~v~~ihg~~~ 410 (779)
...+++|||.+- ..+..++..|+..|+++..+.||+.
T Consensus 71 ~~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~ 109 (144)
T 3nhv_A 71 KEKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIE 109 (144)
T ss_dssp TTSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHH
T ss_pred CCCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHH
Confidence 467899999987 6889999999999999999999875
No 424
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=40.53 E-value=14 Score=36.02 Aligned_cols=19 Identities=26% Similarity=0.155 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
....+++.|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3467899999999999654
No 425
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=40.19 E-value=24 Score=37.62 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=24.7
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccC
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPT 210 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Pt 210 (779)
.|.-+++.+++|+|||... +.++..+... +..++|+..-
T Consensus 73 ~G~li~I~G~pGsGKTtla-l~la~~~~~~-------g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLA-LAIVAQAQKA-------GGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHH-HHHHHHHHHT-------TCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHH-HHHHHHHHHC-------CCeEEEEECC
Confidence 3567899999999999544 3344333331 2356776654
No 426
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=40.12 E-value=16 Score=40.48 Aligned_cols=24 Identities=21% Similarity=0.213 Sum_probs=19.4
Q ss_pred HHhcCCCEEEEccCCCChhHHHHH
Q psy17912 161 IALSGCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 161 ~il~g~dvii~apTGsGKTl~~~l 184 (779)
.+.+|+.+++.++.|+|||.....
T Consensus 147 pi~kGq~~~i~G~sGvGKTtL~~~ 170 (473)
T 1sky_E 147 PYIKGGKIGLFGGAGVGKTVLIQE 170 (473)
T ss_dssp CEETTCEEEEECCSSSCHHHHHHH
T ss_pred hhccCCEEEEECCCCCCccHHHHH
Confidence 455888999999999999965443
No 427
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=39.83 E-value=30 Score=47.17 Aligned_cols=48 Identities=13% Similarity=0.070 Sum_probs=31.2
Q ss_pred CHHHHHHHHHcCCCCCCHHH-HHHH---HHHhcCCCEEEEccCCCChhHHHHH
Q psy17912 136 PPYIMKKIYEMGFQAPTAIQ-AQGW---PIALSGCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 136 ~~~l~~~l~~~g~~~p~~~Q-~~~i---~~il~g~dvii~apTGsGKTl~~~l 184 (779)
...+.+.+.+.|+. +.+.+ ..++ ..+...+.++++||||||||.++-.
T Consensus 874 ~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~~ 925 (3245)
T 3vkg_A 874 RKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWEV 925 (3245)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHHH
T ss_pred HHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHHH
Confidence 34555666667764 44443 3333 3344667799999999999988643
No 428
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=39.73 E-value=13 Score=32.67 Aligned_cols=37 Identities=11% Similarity=0.149 Sum_probs=31.9
Q ss_pred CCCcEEEEecchhH--HHHHHHHHHhCCCeEEEEcCCCC
Q psy17912 374 RTSKTIIFVETKRK--ADDITRSVRNKGWAAVAIHGNKS 410 (779)
Q Consensus 374 ~~~kvLVF~~s~~~--ae~L~~~L~~~g~~v~~ihg~~~ 410 (779)
+..+++|||.+-.. +..++..|...|+.+..+.||+.
T Consensus 70 ~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~ 108 (124)
T 3flh_A 70 PAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALE 108 (124)
T ss_dssp TTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHH
T ss_pred CCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHH
Confidence 46789999998776 88999999999999888999865
No 429
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=39.71 E-value=14 Score=35.65 Aligned_cols=19 Identities=21% Similarity=0.083 Sum_probs=14.9
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.|.-+.+.||+|||||+..
T Consensus 21 ~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp SCEEEEEECCTTSCTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3556889999999999543
No 430
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=39.63 E-value=18 Score=33.83 Aligned_cols=18 Identities=28% Similarity=0.148 Sum_probs=14.8
Q ss_pred CCEEEEccCCCChhHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~ 183 (779)
..++++|+.|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGR 20 (184)
T ss_dssp CSEEEECSTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 468999999999997643
No 431
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=39.23 E-value=16 Score=35.30 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=14.5
Q ss_pred CEEEEccCCCChhHHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 167 dvii~apTGsGKTl~~~l 184 (779)
.+++.|+.|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999976543
No 432
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=39.18 E-value=25 Score=31.93 Aligned_cols=37 Identities=8% Similarity=0.112 Sum_probs=31.4
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCC-eEEEEcCCCC
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGW-AAVAIHGNKS 410 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~-~v~~ihg~~~ 410 (779)
+..+++|||.+-..+..++..|...|+ ++..+.|++.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 467899999988888899999999999 5999999985
No 433
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=38.91 E-value=18 Score=33.30 Aligned_cols=18 Identities=17% Similarity=0.093 Sum_probs=14.7
Q ss_pred CCEEEEccCCCChhHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~ 183 (779)
+.+++.|+.|||||.+.-
T Consensus 3 ~~I~l~G~~GsGKsT~a~ 20 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGR 20 (173)
T ss_dssp CCEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999996643
No 434
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=38.87 E-value=17 Score=34.69 Aligned_cols=56 Identities=13% Similarity=0.220 Sum_probs=37.1
Q ss_pred CCCcEEEEecchhHHHH-HHHHHHh---CCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEec
Q psy17912 374 RTSKTIIFVETKRKADD-ITRSVRN---KGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQY 433 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~-L~~~L~~---~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~ 433 (779)
...++||+||++..+++ +.+.+.. .++.+..++|+.....+...+. ...+|+|+|.
T Consensus 81 ~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~----~~~~i~v~T~ 140 (216)
T 3b6e_A 81 EPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGDTQLKISFPEVV----KSCDIIISTA 140 (216)
T ss_dssp CCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC---CCCCHHHHH----HHCSEEEEEH
T ss_pred CCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCCcccchhHHhhc----cCCCEEEECH
Confidence 36789999999998887 6665554 3678999998765433222221 2578999996
No 435
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=38.83 E-value=16 Score=38.23 Aligned_cols=17 Identities=24% Similarity=0.153 Sum_probs=14.7
Q ss_pred CCEEEEccCCCChhHHH
Q psy17912 166 CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~ 182 (779)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57999999999999553
No 436
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=38.78 E-value=13 Score=38.29 Aligned_cols=17 Identities=29% Similarity=0.241 Sum_probs=14.1
Q ss_pred CCEEEEccCCCChhHHH
Q psy17912 166 CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~ 182 (779)
.-++++||+|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35889999999999654
No 437
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=38.62 E-value=14 Score=36.36 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=16.3
Q ss_pred cCCCEEEEccCCCChhHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~l 184 (779)
+.+-+++.||+||||++.+..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 445688999999999976543
No 438
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=38.44 E-value=30 Score=32.54 Aligned_cols=15 Identities=27% Similarity=0.091 Sum_probs=12.6
Q ss_pred CEEEEccCCCChhHH
Q psy17912 167 DLVAIAKTGSGKTLG 181 (779)
Q Consensus 167 dvii~apTGsGKTl~ 181 (779)
-+.+.++.|||||..
T Consensus 6 ~i~i~G~sGsGKTTl 20 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL 20 (169)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477899999999954
No 439
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=38.37 E-value=27 Score=36.18 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=14.9
Q ss_pred CCCEEEEccCCCChhHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~ 182 (779)
+.-+.++||+|+|||+..
T Consensus 102 g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 557889999999999654
No 440
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=38.34 E-value=16 Score=34.16 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=13.9
Q ss_pred CEEEEccCCCChhHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 167 dvii~apTGsGKTl~~~ 183 (779)
.+++.|+.|||||+..-
T Consensus 3 ~I~i~G~~GsGKsT~~~ 19 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLA 19 (194)
T ss_dssp EEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999996543
No 441
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=38.29 E-value=18 Score=35.08 Aligned_cols=19 Identities=16% Similarity=0.078 Sum_probs=15.6
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~ 183 (779)
...+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999997643
No 442
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=38.29 E-value=19 Score=38.40 Aligned_cols=17 Identities=24% Similarity=0.218 Sum_probs=14.1
Q ss_pred CEEEEccCCCChhHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 167 dvii~apTGsGKTl~~~ 183 (779)
-++++||||+|||..+-
T Consensus 25 ~~~i~G~NGaGKTTll~ 41 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFE 41 (365)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred eEEEECCCCCCHHHHHH
Confidence 56799999999997653
No 443
>3dmn_A Putative DNA helicase; APC89291.2, lactobacillus plantarum WCFS1, STR genomics, PSI-2, midwest center for structural genomics; HET: MSE; 1.66A {Lactobacillus plantarum}
Probab=38.15 E-value=2.4e+02 Score=25.92 Aligned_cols=70 Identities=10% Similarity=0.109 Sum_probs=51.0
Q ss_pred HHHHHHHHHhccCCCCcEEEEecchhHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHhcCCCcEEEEecccccccc
Q psy17912 361 YKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQER 440 (779)
Q Consensus 361 ~~L~~ll~~i~~~~~~kvLVF~~s~~~ae~L~~~L~~~g~~v~~ihg~~~~~eR~~il~~F~~G~~~ILVAT~v~~~GID 440 (779)
..+...+... ....+.+-|.|.+..++..+.+.|...|+++..+..+.. . -.-.|.|.|--.+.|+-
T Consensus 48 ~~i~~~I~~~-~~g~~~iAVL~r~~~~~~~l~~~L~~~gi~~~~l~~~~~---------~---~~~~v~v~t~~~~KGlE 114 (174)
T 3dmn_A 48 DQVVDQLAMN-DSERDTTAIIGKSLAECEALTKALKARGEQVTLIQTENQ---------R---LAPGVIVVPSFLAKGLE 114 (174)
T ss_dssp HHHHHHHHHH-HHTTCCEEEEESSHHHHHHHHHHHHTTTCCEEECSSCC----------C---CCSSEEEEEGGGCTTCC
T ss_pred HHHHHHHHHh-ccCCCcEEEEecCHHHHHHHHHHHHHcCCcceeeccccc---------c---cCCCeEEEEccccCCcC
Confidence 3444444442 234677999999999999999999999998877765432 1 23479999999999997
Q ss_pred cCc
Q psy17912 441 DRV 443 (779)
Q Consensus 441 ip~ 443 (779)
++.
T Consensus 115 f~~ 117 (174)
T 3dmn_A 115 FDA 117 (174)
T ss_dssp EEE
T ss_pred CCE
Confidence 653
No 444
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=38.11 E-value=14 Score=35.22 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.+.-+++.|+.|||||+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3556889999999999654
No 445
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=37.94 E-value=17 Score=34.34 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.3
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
.+.+.||.|+|||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4688999999999653
No 446
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=37.92 E-value=17 Score=35.31 Aligned_cols=18 Identities=17% Similarity=0.034 Sum_probs=14.7
Q ss_pred CCEEEEccCCCChhHHHH
Q psy17912 166 CDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~~ 183 (779)
..+.+.||+|||||+..-
T Consensus 6 ~~i~i~G~~GsGKSTl~~ 23 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCK 23 (227)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999996643
No 447
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=37.88 E-value=17 Score=35.09 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=14.1
Q ss_pred CEEEEccCCCChhHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 167 dvii~apTGsGKTl~~~ 183 (779)
.+++.|+.|||||+..-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 448
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=37.85 E-value=18 Score=35.08 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=15.5
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~ 183 (779)
+..+++.|+.|||||+..-
T Consensus 4 ~~~I~l~G~~GsGKsT~a~ 22 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAP 22 (220)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578999999999996643
No 449
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=37.78 E-value=20 Score=32.12 Aligned_cols=37 Identities=8% Similarity=0.337 Sum_probs=32.3
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCCe-EEEEcCCCC
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGWA-AVAIHGNKS 410 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~~-v~~ihg~~~ 410 (779)
...+++|||.+-..+...+..|...|+. +..+.||+.
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~ 127 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMN 127 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHH
Confidence 4678999999988899999999999995 888889864
No 450
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=37.71 E-value=19 Score=34.78 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=14.4
Q ss_pred CEEEEccCCCChhHHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 167 dvii~apTGsGKTl~~~l 184 (779)
-.+++|+.|||||+.+..
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 468999999999976533
No 451
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=37.55 E-value=1.6e+02 Score=30.85 Aligned_cols=18 Identities=22% Similarity=0.202 Sum_probs=14.6
Q ss_pred CEEEEccCCCChhHHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 167 dvii~apTGsGKTl~~~l 184 (779)
.+++++++|+|||..+.-
T Consensus 81 ~I~i~G~~G~GKSTl~~~ 98 (355)
T 3p32_A 81 RVGITGVPGVGKSTAIEA 98 (355)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 588999999999965433
No 452
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=37.55 E-value=17 Score=33.99 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.1
Q ss_pred CEEEEccCCCChhHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 167 dvii~apTGsGKTl~~~ 183 (779)
.++++|+.|||||+..-
T Consensus 8 ~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999997543
No 453
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=37.50 E-value=16 Score=34.08 Aligned_cols=19 Identities=32% Similarity=0.504 Sum_probs=15.5
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.|..+++.|+.|||||+..
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999654
No 454
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=37.35 E-value=19 Score=31.84 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=33.0
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCCe-EEEEcCCCCH
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGWA-AVAIHGNKSQ 411 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~~-v~~ihg~~~~ 411 (779)
...+++|||.+-..+..++..|...|+. +..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 4678999999988899999999999985 8889999753
No 455
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=37.21 E-value=18 Score=30.82 Aligned_cols=38 Identities=8% Similarity=0.201 Sum_probs=33.0
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCCe-EEEEcCCCCH
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGWA-AVAIHGNKSQ 411 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~~-v~~ihg~~~~ 411 (779)
+..+++|||.+-..+..++..|...|+. +..+.||+..
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 95 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEA 95 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHH
Confidence 4678999999988899999999999985 8899998754
No 456
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=37.04 E-value=19 Score=34.27 Aligned_cols=19 Identities=16% Similarity=0.310 Sum_probs=15.2
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~ 183 (779)
+..++++|+.|||||...-
T Consensus 20 ~~~I~l~G~~GsGKST~a~ 38 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAV 38 (201)
T ss_dssp CCEEEEECCTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3468999999999996643
No 457
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=36.96 E-value=20 Score=34.21 Aligned_cols=41 Identities=15% Similarity=0.210 Sum_probs=25.6
Q ss_pred CCCeeEEEEccchhh--hcCCchHHHHHHHhhcCCCCceEEeeccc
Q psy17912 273 LHRTSYLVLDEADRM--LDMGFEPQIRKIIGQIRPDRQVLMWSATW 316 (779)
Q Consensus 273 l~~i~~lViDEaH~l--~~~~f~~~l~~il~~l~~~~qilllSAT~ 316 (779)
+...+++|+||+..+ .+..|...+..++.. ...+|+-|+|.
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~v 145 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPV 145 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCC
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeec
Confidence 566789999998766 333355556665553 33355446665
No 458
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=36.91 E-value=16 Score=35.10 Aligned_cols=19 Identities=26% Similarity=0.032 Sum_probs=14.8
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.+.-+.+.||+|||||+..
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 3445789999999999653
No 459
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=36.86 E-value=18 Score=35.16 Aligned_cols=18 Identities=28% Similarity=0.248 Sum_probs=14.4
Q ss_pred CEEEEccCCCChhHHHHH
Q psy17912 167 DLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 167 dvii~apTGsGKTl~~~l 184 (779)
.+++.||+||||++.+..
T Consensus 2 ~Iil~GpPGsGKgTqa~~ 19 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKR 19 (206)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478899999999966543
No 460
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=36.81 E-value=25 Score=43.70 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=27.9
Q ss_pred EEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEEccCHH
Q psy17912 168 LVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRE 212 (779)
Q Consensus 168 vii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil~Ptr~ 212 (779)
-+|.|..|||||.+.+--+...+.... .+..+|+|||...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~-----~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAP-----FGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCT-----TSSCEEEECCGGG
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCC-----CCCcEEEEecCcc
Confidence 368899999999776655555444421 2457899999764
No 461
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=36.61 E-value=27 Score=36.06 Aligned_cols=19 Identities=21% Similarity=0.361 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.|.-+.++||+|+|||+..
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3456889999999999654
No 462
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=36.59 E-value=26 Score=40.03 Aligned_cols=23 Identities=22% Similarity=0.262 Sum_probs=19.0
Q ss_pred HHHhcCCCEEEEccCCCChhHHH
Q psy17912 160 PIALSGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 160 ~~il~g~dvii~apTGsGKTl~~ 182 (779)
..+..+..+++.||+|+|||..+
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHHH
Confidence 34567899999999999999554
No 463
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=36.41 E-value=24 Score=39.00 Aligned_cols=20 Identities=30% Similarity=0.232 Sum_probs=16.2
Q ss_pred cCCCEEEEccCCCChhHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~ 183 (779)
...++++.||+|+|||..+-
T Consensus 200 ~~~~~LL~G~pG~GKT~la~ 219 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAE 219 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHH
Confidence 34589999999999996543
No 464
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=36.24 E-value=15 Score=35.98 Aligned_cols=43 Identities=16% Similarity=-0.002 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhcC----CCEEEEccCCCChhHHH
Q psy17912 138 YIMKKIYEMGFQAPTAIQAQGWPIALSG----CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 138 ~l~~~l~~~g~~~p~~~Q~~~i~~il~g----~dvii~apTGsGKTl~~ 182 (779)
.+.+-|.-.+ ..+... ...+..++++ +.+++.||.|+|||..+
T Consensus 29 ~I~~~l~yq~-~~~~~f-~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 29 PIVQFLRYQQ-IEFITF-LGALKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHHHTT-CCHHHH-HHHHHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHHHHcC-cCHHHH-HHHHHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 4555554222 223333 3444444444 35999999999999543
No 465
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=35.98 E-value=17 Score=34.88 Aligned_cols=19 Identities=26% Similarity=-0.004 Sum_probs=15.2
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.+.-+.+.|++|||||+..
T Consensus 20 ~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4556889999999999653
No 466
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=35.94 E-value=17 Score=37.86 Aligned_cols=18 Identities=22% Similarity=0.213 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCChhHH
Q psy17912 164 SGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~ 181 (779)
.|.-+.++||+|+|||..
T Consensus 125 ~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp TCSEEEEECSSSSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 678899999999999954
No 467
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=35.76 E-value=18 Score=34.02 Aligned_cols=20 Identities=30% Similarity=0.187 Sum_probs=16.0
Q ss_pred cCCCEEEEccCCCChhHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~ 183 (779)
.+..++++|+.|||||...-
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~ 31 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIAT 31 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHH
Confidence 35568999999999996643
No 468
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=35.64 E-value=16 Score=36.23 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.4
Q ss_pred cCCCEEEEccCCCChhHH
Q psy17912 164 SGCDLVAIAKTGSGKTLG 181 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~ 181 (779)
.|.-+.+.||+|||||+.
T Consensus 30 ~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp TTCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCcHHHH
Confidence 577889999999999943
No 469
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=35.55 E-value=28 Score=41.41 Aligned_cols=19 Identities=26% Similarity=0.301 Sum_probs=15.8
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.++.++++||+|+|||+.+
T Consensus 237 ~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCEEEECSCTTSSHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4568999999999999543
No 470
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=35.48 E-value=42 Score=37.99 Aligned_cols=27 Identities=30% Similarity=0.294 Sum_probs=19.4
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHh
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVN 191 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~ 191 (779)
..+++|.|.||||||.+.-..++..+.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~ 240 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILF 240 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999665444444443
No 471
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=35.07 E-value=21 Score=32.05 Aligned_cols=37 Identities=16% Similarity=0.327 Sum_probs=32.6
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCC-eEEEEcCCCC
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGW-AAVAIHGNKS 410 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~-~v~~ihg~~~ 410 (779)
+..+++|||.+-..+...+..|...|+ ++..+.||+.
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 118 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMD 118 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHH
Confidence 467899999998889999999999998 5889999975
No 472
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=35.01 E-value=24 Score=44.45 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=27.5
Q ss_pred CCCeeEEEEccchhhhcCCchHHHHHHHhhcCCCCceEEee
Q psy17912 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWS 313 (779)
Q Consensus 273 l~~i~~lViDEaH~l~~~~f~~~l~~il~~l~~~~qilllS 313 (779)
+++-+++|+||+=.-+|..-+..+.+.+..+..++-+++.|
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiia 610 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIA 610 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEEC
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEc
Confidence 55678999999987777766666666666554555444444
No 473
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=34.91 E-value=30 Score=30.80 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=32.2
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCC-eEEEEcCCCC
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGW-AAVAIHGNKS 410 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~-~v~~ihg~~~ 410 (779)
...+++|||.+=..+...+..|...|+ ++..+.|++.
T Consensus 73 ~~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 73 ENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GGCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 467899999998888899999999999 4888999984
No 474
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=34.90 E-value=20 Score=33.87 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=13.4
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
.+++.|+.|||||+..
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4789999999999654
No 475
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=34.87 E-value=21 Score=31.79 Aligned_cols=37 Identities=11% Similarity=0.232 Sum_probs=32.6
Q ss_pred CCCcEEEEecchhHHHHHHHHHHhCCCe-EEEEcCCCC
Q psy17912 374 RTSKTIIFVETKRKADDITRSVRNKGWA-AVAIHGNKS 410 (779)
Q Consensus 374 ~~~kvLVF~~s~~~ae~L~~~L~~~g~~-v~~ihg~~~ 410 (779)
...+++|||.+-..+..++..|+..|+. +..+.||+.
T Consensus 85 ~~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~ 122 (139)
T 2hhg_A 85 EDKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFG 122 (139)
T ss_dssp SSSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHH
Confidence 4678999999988889999999999995 999999875
No 476
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=34.80 E-value=21 Score=34.13 Aligned_cols=20 Identities=25% Similarity=0.089 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCChhHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~ 183 (779)
.+.-++++|+.|||||+..-
T Consensus 9 ~~~~I~l~G~~GsGKST~~~ 28 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSK 28 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHH
Confidence 45678999999999997643
No 477
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=34.64 E-value=18 Score=33.63 Aligned_cols=19 Identities=21% Similarity=-0.027 Sum_probs=11.6
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~ 183 (779)
+.-+++.|+.|||||...-
T Consensus 5 ~~~I~l~G~~GsGKST~a~ 23 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAH 23 (183)
T ss_dssp CCEEEEECCC----CHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4578999999999997643
No 478
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=34.08 E-value=22 Score=33.98 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.5
Q ss_pred cCCCEEEEccCCCChhHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~ 183 (779)
.+.-++++|+.|||||+..-
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~ 27 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSR 27 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46679999999999997653
No 479
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=34.04 E-value=22 Score=32.55 Aligned_cols=16 Identities=25% Similarity=0.079 Sum_probs=13.6
Q ss_pred CEEEEccCCCChhHHH
Q psy17912 167 DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 167 dvii~apTGsGKTl~~ 182 (779)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999654
No 480
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=34.03 E-value=27 Score=34.59 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=16.4
Q ss_pred cCCCEEEEccCCCChhHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIA 184 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~l 184 (779)
....+++.||.|||||+..-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 445699999999999966433
No 481
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=33.99 E-value=21 Score=33.89 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=14.1
Q ss_pred CCEEEEccCCCChhHHH
Q psy17912 166 CDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 166 ~dvii~apTGsGKTl~~ 182 (779)
..++++|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35889999999999654
No 482
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=33.97 E-value=22 Score=35.57 Aligned_cols=19 Identities=16% Similarity=0.062 Sum_probs=15.7
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.+..+.+.||+|||||+..
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4567889999999999654
No 483
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=33.65 E-value=22 Score=34.43 Aligned_cols=19 Identities=32% Similarity=0.385 Sum_probs=15.3
Q ss_pred CCCEEEEccCCCChhHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYI 183 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~ 183 (779)
+..+++.|+.|||||+..-
T Consensus 5 ~~~I~l~G~~GsGKsT~a~ 23 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCE 23 (217)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568999999999996643
No 484
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=33.51 E-value=24 Score=37.53 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy17912 168 LVAIAKTGSGKTLGYIAPAIVHV 190 (779)
Q Consensus 168 vii~apTGsGKTl~~~lp~l~~l 190 (779)
.+++||||+|||...-.-.+...
T Consensus 28 ~vi~G~NGaGKT~ileAI~~~l~ 50 (371)
T 3auy_A 28 VAIIGENGSGKSSIFEAVFFALF 50 (371)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
No 485
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=33.13 E-value=22 Score=33.86 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHH
Q psy17912 168 LVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 168 vii~apTGsGKTl~~~lp~ 186 (779)
+.+.|+.|||||+..-..+
T Consensus 4 i~i~G~~GsGKSTl~~~L~ 22 (204)
T 2if2_A 4 IGLTGNIGCGKSTVAQMFR 22 (204)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
No 486
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=33.00 E-value=22 Score=33.86 Aligned_cols=19 Identities=26% Similarity=0.027 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHH
Q psy17912 168 LVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 168 vii~apTGsGKTl~~~lp~ 186 (779)
+.+.|+.|||||+..-+.+
T Consensus 5 i~l~G~~GsGKST~~~~La 23 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIANLFT 23 (206)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 487
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=32.73 E-value=22 Score=34.26 Aligned_cols=19 Identities=11% Similarity=0.041 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHH
Q psy17912 168 LVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 168 vii~apTGsGKTl~~~lp~ 186 (779)
+++.|+.|||||+..-..+
T Consensus 3 I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 488
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=32.60 E-value=22 Score=33.56 Aligned_cols=19 Identities=21% Similarity=0.128 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHH
Q psy17912 168 LVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 168 vii~apTGsGKTl~~~lp~ 186 (779)
+.+.+++|||||.+.-+.+
T Consensus 11 I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 11 IGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp EEEEECTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 489
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=32.59 E-value=64 Score=40.04 Aligned_cols=59 Identities=17% Similarity=0.069 Sum_probs=0.0
Q ss_pred CCCEEEEccCCCChhHHHHHHHHHHHhccC----CCCCCCCCEEEEEccCHHHHHHHHHHHHH
Q psy17912 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQR----PLRSGEGPIVLVLAPTRELAQQIETVAND 223 (779)
Q Consensus 165 g~dvii~apTGsGKTl~~~lp~l~~l~~~~----~~~~~~~~~vLil~Ptr~La~Q~~~~~~~ 223 (779)
....+|.|.-|||||.+...-++..+.... ....-.-..+|+|+=|+.-|.++.+.+.+
T Consensus 16 ~g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 16 QGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp SSCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
No 490
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=32.47 E-value=18 Score=41.31 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=0.0
Q ss_pred HHHHHHHhcCC--------------CEEEEccCCCChhHHH
Q psy17912 156 AQGWPIALSGC--------------DLVAIAKTGSGKTLGY 182 (779)
Q Consensus 156 ~~~i~~il~g~--------------dvii~apTGsGKTl~~ 182 (779)
..++-..+.+. ++++.||+|+|||..+
T Consensus 304 k~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 304 KEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQML 344 (595)
T ss_dssp HHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHH
T ss_pred HHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHH
No 491
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=32.40 E-value=27 Score=33.60 Aligned_cols=22 Identities=32% Similarity=0.357 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHHh
Q psy17912 168 LVAIAKTGSGKTLGYIAPAIVHVN 191 (779)
Q Consensus 168 vii~apTGsGKTl~~~lp~l~~l~ 191 (779)
.++.||+|+||| .++-++..+.
T Consensus 26 ~~I~G~NgsGKS--til~ai~~~l 47 (203)
T 3qks_A 26 NLIIGQNGSGKS--SLLDAILVGL 47 (203)
T ss_dssp EEEECCTTSSHH--HHHHHHHHHH
T ss_pred EEEEcCCCCCHH--HHHHHHHHHh
No 492
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=32.32 E-value=24 Score=33.02 Aligned_cols=19 Identities=26% Similarity=0.106 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHH
Q psy17912 168 LVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 168 vii~apTGsGKTl~~~lp~ 186 (779)
+++.|+.|||||+..-...
T Consensus 3 I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp EEEECSTTSCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 493
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=32.25 E-value=24 Score=33.16 Aligned_cols=19 Identities=26% Similarity=0.183 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHH
Q psy17912 168 LVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 168 vii~apTGsGKTl~~~lp~ 186 (779)
+++.|+.|||||+..-...
T Consensus 3 I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
No 494
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=32.24 E-value=25 Score=38.53 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=0.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~ 186 (779)
..+++++.+|+|+|||..+-..+
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA 71 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLA 71 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHH
T ss_pred CCceEEEEcCCCCCHHHHHHHHH
No 495
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=32.07 E-value=20 Score=35.59 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=0.0
Q ss_pred cCCCEEEEccCCCChhHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGY 182 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~ 182 (779)
.|.-+.+.||+|||||+..
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
No 496
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=31.99 E-value=21 Score=39.73 Aligned_cols=39 Identities=13% Similarity=0.165 Sum_probs=0.0
Q ss_pred HhcCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCC-CCEEEEEc
Q psy17912 162 ALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGE-GPIVLVLA 208 (779)
Q Consensus 162 il~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~-~~~vLil~ 208 (779)
+..|.-+++.|++|+||| ++++-++..+.. . +..++++.
T Consensus 239 l~~G~l~li~G~pG~GKT-~lal~~a~~~a~-------~~g~~vl~~s 278 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMS-TFVRQQALQWGT-------AMGKKVGLAM 278 (503)
T ss_dssp CCTTCEEEEEESSCHHHH-HHHHHHHHHHTT-------TSCCCEEEEE
T ss_pred cCCCeEEEEeecCCCCch-HHHHHHHHHHHH-------hcCCcEEEEe
No 497
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=31.99 E-value=35 Score=36.27 Aligned_cols=36 Identities=25% Similarity=0.227 Sum_probs=0.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHHHHHHhccCCCCCCCCCEEEEE
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVL 207 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~l~~l~~~~~~~~~~~~~vLil 207 (779)
.+..+.++||+|+|||+..-..+-..-.. +..+++.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~--------~G~V~l~ 191 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNE--------GTKVLMA 191 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHT--------TCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhcccc--------CCEEEEe
No 498
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=31.97 E-value=30 Score=40.52 Aligned_cols=28 Identities=36% Similarity=0.457 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCC--EEEEccCCCChhHHHH
Q psy17912 156 AQGWPIALSGCD--LVAIAKTGSGKTLGYI 183 (779)
Q Consensus 156 ~~~i~~il~g~d--vii~apTGsGKTl~~~ 183 (779)
...+..+++|.| ++.-|+||||||.+..
T Consensus 452 ~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~ 481 (715)
T 4h1g_A 452 SQLIQCSLDGTNVCVFAYGQTGSGKTFTMS 481 (715)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHHH
T ss_pred HHHHHHHhCCceEEEEccCCCCCchhhccC
No 499
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=31.90 E-value=25 Score=34.75 Aligned_cols=23 Identities=26% Similarity=0.115 Sum_probs=0.0
Q ss_pred cCCCEEEEccCCCChhHHHHHHH
Q psy17912 164 SGCDLVAIAKTGSGKTLGYIAPA 186 (779)
Q Consensus 164 ~g~dvii~apTGsGKTl~~~lp~ 186 (779)
.+..++++||.|||||+..-+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHH
No 500
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=31.63 E-value=30 Score=32.62 Aligned_cols=22 Identities=32% Similarity=0.373 Sum_probs=0.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHH
Q psy17912 168 LVAIAKTGSGKTLGYIAPAIVHV 190 (779)
Q Consensus 168 vii~apTGsGKTl~~~lp~l~~l 190 (779)
++++|+.|+||| +++..++..+
T Consensus 9 i~i~G~sGsGKT-Tl~~~l~~~l 30 (174)
T 1np6_A 9 LAFAAWSGTGKT-TLLKKLIPAL 30 (174)
T ss_dssp EEEECCTTSCHH-HHHHHHHHHH
T ss_pred EEEEeCCCCCHH-HHHHHHHHhc
Done!