RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17912
(779 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 187 bits (475), Expect = 3e-55
Identities = 79/208 (37%), Positives = 119/208 (57%), Gaps = 8/208 (3%)
Query: 130 FEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSG-CDLVAIAKTGSGKTLGYIAPAIV 188
F E N I+ I GF+ PT IQ + P+ L+ ++VA A+TGSGKT + P I
Sbjct: 6 FNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIE 65
Query: 189 HVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKAL 248
VN G ++L PTRELA Q+ ++A ++GG PQ+KAL
Sbjct: 66 LVNENN------GIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKAL 119
Query: 249 QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 308
+ A IV+ TPGR++D++ +GT+NL Y +LDEAD ML+MGF + KI+ D++
Sbjct: 120 K-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACNKDKR 178
Query: 309 VLMWSATWPKEVQKLAEDFLVDYVQLNI 336
+L++SAT P+E+ LA+ ++ DY +
Sbjct: 179 ILLFSATMPREILNLAKKYMGDYSFIKA 206
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 175 bits (443), Expect = 1e-50
Identities = 100/229 (43%), Positives = 137/229 (59%), Gaps = 8/229 (3%)
Query: 117 SRPGKCVPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGS 176
+ P I++F+E P I I +Q PT IQ P L D++A A+TGS
Sbjct: 10 TGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGS 69
Query: 177 GKTLGYIAPAIVHVNS----QRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRV 232
GKT ++ P I H+ Q+ P L+LAPTRELA QI + + F T R
Sbjct: 70 GKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRS 129
Query: 233 ACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGF 292
V+GGA Q++ +Q G +++ATPGRL+D++E+ I+L Y+VLDEADRMLDMGF
Sbjct: 130 CVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDMGF 189
Query: 293 EPQIRKIIGQIR----PDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIG 337
EPQIRKII + +RQ LM+SAT+PKE+QKLA DFL +Y+ + +G
Sbjct: 190 EPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTVG 238
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 171 bits (433), Expect = 2e-49
Identities = 68/216 (31%), Positives = 110/216 (50%), Gaps = 6/216 (2%)
Query: 123 VPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGY 182
+ F++ N +++ IY GF+ P+AIQ + + G D++A A++G+GKT +
Sbjct: 7 WNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATF 66
Query: 183 IAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKG 242
+ + LVLAPTRELAQQI+ V G GG
Sbjct: 67 AISILQQIELDLK-----ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVR 121
Query: 243 PQVKALQTGA-EIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIG 301
+V+ LQ A I++ TPGR+ D L + ++ VLDEAD ML GF+ QI I
Sbjct: 122 AEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 181
Query: 302 QIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIG 337
++ + QV++ SAT P +V ++ + F+ D +++ +
Sbjct: 182 KLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVK 217
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 164 bits (415), Expect = 5e-47
Identities = 65/214 (30%), Positives = 110/214 (51%), Gaps = 6/214 (2%)
Query: 123 VPRPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGY 182
+ + F++ +++ ++ GF+ P+AIQ + + G D++A A++G+GKT
Sbjct: 5 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKT--- 61
Query: 183 IAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKG 242
QR S + P L+LAPTRELA QI+ V +V GG
Sbjct: 62 --GTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFV 119
Query: 243 PQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQ 302
+ L+ A+IV+ TPGR+ D +++ + +LDEAD ML GF+ QI +I
Sbjct: 120 EDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTL 178
Query: 303 IRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNI 336
+ P QV++ SAT P +V ++ F+ + V++ +
Sbjct: 179 LPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 164 bits (415), Expect = 7e-47
Identities = 63/212 (29%), Positives = 106/212 (50%), Gaps = 5/212 (2%)
Query: 126 PIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAP 185
F+ +++ IY GF+ P+AIQ + + G D++A +++G+GKT +
Sbjct: 15 VTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 74
Query: 186 AIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQV 245
+ ++ Q L+LAPTRELA QI+ G + GG G +
Sbjct: 75 VLQCLDIQVR-----ETQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDI 129
Query: 246 KALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRP 305
+ L G +V TPGR+ D + + ++ LVLDEAD ML+ GF+ QI + + P
Sbjct: 130 RKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPP 189
Query: 306 DRQVLMWSATWPKEVQKLAEDFLVDYVQLNIG 337
QV++ SAT P E+ ++ F+ D +++ +
Sbjct: 190 ATQVVLISATLPHEILEMTNKFMTDPIRILVK 221
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 152 bits (384), Expect = 9e-43
Identities = 59/210 (28%), Positives = 105/210 (50%), Gaps = 8/210 (3%)
Query: 130 FEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVH 189
F + P +++ I + GF+ P+ +Q + P A+ G D++ AK+G GKT ++ +
Sbjct: 3 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQ 62
Query: 190 VNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATAT-RVACVFGGAPKGPQVKAL 248
+ VLV+ TRELA QI F +VA FGG + L
Sbjct: 63 LEPVTG-----QVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 117
Query: 249 -QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLD-MGFEPQIRKIIGQIRPD 306
+ IV+ TPGR++ ++NL + +LDE D+ML+ + +++I +
Sbjct: 118 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 177
Query: 307 RQVLMWSATWPKEVQKLAEDFLVDYVQLNI 336
+QV+M+SAT KE++ + F+ D +++ +
Sbjct: 178 KQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 144 bits (363), Expect = 5e-40
Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 6/207 (2%)
Query: 130 FEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVH 189
FE+ ++ I+EMG++ P+ IQ + PIALSG D++A AK G+GK+ Y+ P +
Sbjct: 5 FEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLER 64
Query: 190 VNSQRPLRSGEGPIVLVLAPTRELAQQI-ETVANDFGSATATRVACVFGGAPKGPQVKAL 248
++ ++ +V+ PTRELA Q+ + +V GG + L
Sbjct: 65 LDLKKD-----NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL 119
Query: 249 QTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQ 308
+VIATPGR++D +++G + +VLDEAD++L F + II + +RQ
Sbjct: 120 DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQ 179
Query: 309 VLMWSATWPKEVQKLAEDFLVDYVQLN 335
+L++SAT+P VQK L ++N
Sbjct: 180 ILLYSATFPLSVQKFMNSHLEKPYEIN 206
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 142 bits (358), Expect = 3e-39
Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 5/208 (2%)
Query: 130 FEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVH 189
FE+ ++ I+E GF+ P+ IQ + P+A++G D++A AK G+GKT ++ P +
Sbjct: 3 FEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEK 62
Query: 190 VNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQ 249
V + L++ PTRELA Q V G GG + L
Sbjct: 63 VKPKLN-----KIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLN 117
Query: 250 TGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQV 309
I++ TPGR++D + +L S ++DEAD+ML F+ I +I+ + P Q
Sbjct: 118 ETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQS 177
Query: 310 LMWSATWPKEVQKLAEDFLVDYVQLNIG 337
L++SAT+P V++ L ++N+
Sbjct: 178 LLFSATFPLTVKEFMVKHLHKPYEINLM 205
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 132 bits (331), Expect = 9e-36
Identities = 56/207 (27%), Positives = 100/207 (48%), Gaps = 1/207 (0%)
Query: 130 FEECNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVH 189
F F P+I++ I + F PT IQ + P AL G +V ++TG+GKT Y+ I+
Sbjct: 3 FTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYL-LPIME 61
Query: 190 VNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQ 249
++ + + C+ GG K ++ L
Sbjct: 62 KIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLN 121
Query: 250 TGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQV 309
IVI TPGR+ D++ + +++H LV+DEAD MLDMGF + +I ++ D Q+
Sbjct: 122 VQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQM 181
Query: 310 LMWSATWPKEVQKLAEDFLVDYVQLNI 336
L++SAT P++++ + ++ + +++
Sbjct: 182 LVFSATIPEKLKPFLKKYMENPTFVHV 208
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 129 bits (324), Expect = 3e-34
Identities = 41/231 (17%), Positives = 69/231 (29%), Gaps = 36/231 (15%)
Query: 133 CNFPPYIM----KKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIV 188
C FP + + + P AIQ L A A TG GKT +A ++
Sbjct: 22 CLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLF 81
Query: 189 HVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGP----- 243
V+ PT L Q + + G
Sbjct: 82 LALKG--------KRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYHGRIPKREK 133
Query: 244 -QVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLD-----------MG 291
+IVI T L + L ++ +D+ D +L +G
Sbjct: 134 ENFMQNLRNFKIVITTTQFLSKHY----RELGHFDFIFVDDVDAILKASKNVDKLLHLLG 189
Query: 292 FEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPT 342
F ++ +++ +AT K + L+++ +IGS T
Sbjct: 190 FHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNF---DIGSSRIT 237
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 102 bits (255), Expect = 1e-25
Identities = 35/201 (17%), Positives = 66/201 (32%), Gaps = 20/201 (9%)
Query: 129 HFEECNFPPY---IMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAP 185
E N ++++ + G+Q Q + LSG D + + TG GK+L Y P
Sbjct: 3 QAEVLNLESGAKQVLQETF--GYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP 60
Query: 186 AIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQV 245
A++ + +V++P L + G A A +
Sbjct: 61 ALLLN-----------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMT 109
Query: 246 KALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQ----IRKIIG 301
++ P RL+ + L +DEA + G + + +
Sbjct: 110 GCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLR 169
Query: 302 QIRPDRQVLMWSATWPKEVQK 322
Q P + +AT ++
Sbjct: 170 QRFPTLPFMALTATADDTTRQ 190
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 104 bits (260), Expect = 3e-25
Identities = 34/256 (13%), Positives = 69/256 (26%), Gaps = 41/256 (16%)
Query: 167 DLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGS 226
+ G+GKT Y+ + + G L+LAPTR +A ++
Sbjct: 11 LTIMDLHPGAGKTKRYLPAIVREAIKR-------GLRTLILAPTRVVAAEM--------- 54
Query: 227 ATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADR 286
+ + + + L I + + +++DEA
Sbjct: 55 --EEALRGLPIRYQTPAIRAEHTGREIVDLMCHATFTMRL-LSPIRVPNYNLIIMDEAHF 111
Query: 287 MLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGSLNPTANHN 346
+ + + +AT P + N
Sbjct: 112 TDPASIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQS-----------------NAP 154
Query: 347 IVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIH 406
I+ E + + + G KT+ FV + + +DI +R G + +
Sbjct: 155 IMDEEREIPERSWNSGHEWVTDFKG-----KTVWFVPSIKAGNDIAACLRKNGKKVIQLS 209
Query: 407 GNKSQQERDRVLNEFR 422
E +
Sbjct: 210 RKTFDSEYIKTRTNDW 225
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 97.7 bits (242), Expect = 9e-24
Identities = 38/209 (18%), Positives = 68/209 (32%), Gaps = 18/209 (8%)
Query: 130 FEE--CNFPPYIMKKIYEMGFQAPTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAI 187
EE + Y + + E G + QA+ SG +L+ T +GKTL +
Sbjct: 3 VEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMV 62
Query: 188 VHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATATRVACVFGGAPKGPQVKA 247
L + P R LA + + +
Sbjct: 63 REAIKG--------GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEH--- 111
Query: 248 LQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIR--- 304
+I++ T + + + S LV+DE + + ++ ++R
Sbjct: 112 -LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMN 170
Query: 305 PDRQVLMWSATWPKEVQKLAEDFLVDYVQ 333
+V+ SAT P V ++AE DY
Sbjct: 171 KALRVIGLSATAP-NVTEIAEWLDADYYV 198
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 72.5 bits (177), Expect = 9e-15
Identities = 34/258 (13%), Positives = 77/258 (29%), Gaps = 16/258 (6%)
Query: 349 QIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGN 408
+ DV E L +L ++G+ II+ T +A++I S++NK
Sbjct: 3 NVEDVAVNDESISTLSSILEKLGT----GGIIYARTGEEAEEIYESLKNK------FRIG 52
Query: 409 KSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYK--ESQQKR 466
+ +F G L+ + ++ + +
Sbjct: 53 IVTATKKGDYEKFVEGEIDHLIG----TAHYYGTLVRGLDLPERIRFAVFVGCPSFRVTI 108
Query: 467 DRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFR 526
+ + + + + N + ER E I ++ ++ + + +
Sbjct: 109 EDIDSLSPQMVKLLAYLYRNVDEIERLLPAVERHIDEVREILKKVMGKERPQAKDVVVRE 168
Query: 527 IGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILV 586
+ Y + R+ AS L+ ++ + I SI
Sbjct: 169 GEVIFPDLRTYIQGSGRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKLYDIEFKSIDE 228
Query: 587 SHYNKSQQERDRVLNEFR 604
+ K +E D + +R
Sbjct: 229 VDFEKLSRELDESRDRYR 246
Score = 31.7 bits (71), Expect = 0.28
Identities = 4/91 (4%), Positives = 19/91 (20%), Gaps = 6/91 (6%)
Query: 588 HYNKSQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYN--KSQ 645
+ +F G L+ + ++ + +
Sbjct: 50 RIGIVTATKKGDYEKFVEGEIDHLIG----TAHYYGTLVRGLDLPERIRFAVFVGCPSFR 105
Query: 646 QERDRVLNEFRIGRASILVSDFDILRQWRIA 676
+ + + + ++ R+
Sbjct: 106 VTIEDIDSLSPQMVKLLAYLYRNVDEIERLL 136
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 66.7 bits (161), Expect = 4e-13
Identities = 40/175 (22%), Positives = 70/175 (40%), Gaps = 9/175 (5%)
Query: 151 PTAIQAQGWPIALSGCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPT 210
P Q + + + + TG GKTL + A + G VL+LAPT
Sbjct: 10 PRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKY-------GGKVLMLAPT 61
Query: 211 RELAQQIETVANDFGSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGT 270
+ L Q + ++ + G + KA A++++ATP + + L G
Sbjct: 62 KPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWAR-AKVIVATPQTIENDLLAGR 120
Query: 271 INLHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAE 325
I+L S +V DEA R + I + + + V+ +A+ +K+ E
Sbjct: 121 ISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIME 175
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 66.5 bits (162), Expect = 2e-12
Identities = 17/117 (14%), Positives = 32/117 (27%), Gaps = 20/117 (17%)
Query: 341 PTANH-NIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKG 399
T H NI ++ Y G + + + +IF +K+K D++ + G
Sbjct: 4 VTVPHPNIEEVALSTTGEIPFY---GKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALG 60
Query: 400 WAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILV 456
AVA + + L G ++
Sbjct: 61 INAVAYYRGLDVSVIPTSGDVV----------------VVATDALMTGFTGDFDSVI 101
Score = 27.2 bits (60), Expect = 7.0
Identities = 9/107 (8%), Positives = 24/107 (22%), Gaps = 20/107 (18%)
Query: 454 ILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVSHYNK 513
L + + + L + GR I S+++ D + + + + +
Sbjct: 15 ALSTTGEIPFYGKAIPLEVIKGGRHLIFC----HSKKKCDELAAKLVALGINAVAYYRGL 70
Query: 514 SQQERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILV 560
+ L G ++
Sbjct: 71 DVSVIPTSGDVV----------------VVATDALMTGFTGDFDSVI 101
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 53.0 bits (126), Expect = 4e-08
Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 25/162 (15%)
Query: 279 LVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWPKEVQKLAEDFLVDYVQLNIGS 338
L L A +L+ +R I ++ + + K +++ D +
Sbjct: 80 LKLHHAIELLETQGLSALRAYIKKLYEEAKAGS-----TKASKEIFSDKRM--------- 125
Query: 339 LNPTANHNIVQIVDVCQEHEKDYKLQGLLSQI-GSERTSKTIIFVETKRKADDITRSVRN 397
A +VQ ++ +H K KL+ ++ + ++ SK I+F + A I +
Sbjct: 126 --KKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK 183
Query: 398 KGWAAVAIHGNKSQQER--------DRVLNEFRIGRASILVS 431
G A G S++ +L+EF G ++LV+
Sbjct: 184 DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVA 225
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 46.1 bits (108), Expect = 2e-06
Identities = 37/151 (24%), Positives = 62/151 (41%), Gaps = 9/151 (5%)
Query: 350 IVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNK 409
V+V +E K L L I + +IF T+RK +++T +RN + AI+ +
Sbjct: 5 YVNVEEEEYKYECLTDLYDSISVT---QAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDL 61
Query: 410 SQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKRDRV 469
QQERD ++ EFR G + IL + R + + + I + R+
Sbjct: 62 PQQERDTIMKEFRSGSSRIL---ISTDLLARGIDVQQVSL---VINYDLPANKENYIHRI 115
Query: 470 LNEFRIGRASILVSHYNKSQQERDRVLNEFR 500
R GR + ++ R L +F
Sbjct: 116 GRGGRFGRKGVAINFVTNEDVGAMRELEKFY 146
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 42.6 bits (99), Expect = 3e-05
Identities = 35/156 (22%), Positives = 64/156 (41%), Gaps = 10/156 (6%)
Query: 344 NHNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAV 403
N NI Q E+E+ L LL + ++F +TKR ++ +R+ G+ A
Sbjct: 1 NANIEQSYVEVNENERFEALCRLL----KNKEFYGLVFCKTKRDTKELASMLRDIGFKAG 56
Query: 404 AIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQ 463
AIHG+ SQ +R++V+ F+ + I R +N+ L +
Sbjct: 57 AIHGDLSQSQREKVIRLFKQKKIRI---LIATDVMSRGIDVNDLNCVINYHLPQNPESYM 113
Query: 464 QKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 499
+ R R G+ +S N+ + ++ R +
Sbjct: 114 HRIGRTG---RAGKKGKAISIINRREYKKLRYIERA 146
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 43.5 bits (101), Expect = 3e-05
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 358 EKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRV 417
EK L L+ + +R II+ ++ K +D +++KG +A A H R V
Sbjct: 13 EKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADV 72
Query: 418 LNEFRIGRASILVS 431
+F+ I+V+
Sbjct: 73 QEKFQRDDLQIVVA 86
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 42.7 bits (99), Expect = 3e-05
Identities = 32/151 (21%), Positives = 61/151 (40%), Gaps = 5/151 (3%)
Query: 345 HNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVA 404
+NI Q +C EH KD K Q L + GS + IIF +T+R A +T + G
Sbjct: 4 NNIRQYYVLC-EHRKD-KYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSL 61
Query: 405 IHGNKSQQERDRVLNEFRIGRASILVSQ---YNKSQQERDRVLNEFRIGRASILVSQYKE 461
+ G + ++R ++ FR G+ +L++ ++ ++ F + Y+
Sbjct: 62 LSGELTVEQRASIIQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYET 121
Query: 462 SQQKRDRVLNEFRIGRASILVSHYNKSQQER 492
+ R + G A ++ +
Sbjct: 122 YLHRIGRTGRFGKKGLAFNMIEVDELPSLMK 152
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 37.4 bits (86), Expect = 0.001
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 4/85 (4%)
Query: 341 PTANH-NIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKG 399
T H NI ++ Y G + + + +IF +K+K D++ + G
Sbjct: 3 VTVPHPNIEEVALSTTGEIPFY---GKAIPLEVIKGGRHLIFCHSKKKCDELAAKLVALG 59
Query: 400 WAAVAIHGNKSQQERDRVLNEFRIG 424
AVA + + +
Sbjct: 60 INAVAYYRGLDVSVIPTNGDVVVVA 84
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 36.8 bits (84), Expect = 0.003
Identities = 26/148 (17%), Positives = 39/148 (26%), Gaps = 29/148 (19%)
Query: 171 IAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATAT 230
A TGSGK+ PA +G VLVL P+ A
Sbjct: 14 HAPTGSGKST--KVPAAYA---------AQGYKVLVLNPSVAATLG---FGAYMSKAHGV 59
Query: 231 RVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEA---DRM 287
G + +A G ++ DE D
Sbjct: 60 DPNIRTGVRTITTGSPITYSTYGKFLADGGCS----------GGAYDIIICDECHSTDAT 109
Query: 288 LDMGFEPQIRKIIGQIRPDRQVLMWSAT 315
+G + + R V++ +AT
Sbjct: 110 SILGIG-TVLDQA-ETAGARLVVLATAT 135
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 34.1 bits (77), Expect = 0.039
Identities = 20/73 (27%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 362 KLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEF 421
K++ L + R K IIF I++ + AI S++ER+ +L F
Sbjct: 80 KIRKLREILERHRKDKIIIFTRHNELVYRISKV-----FLIPAITHRTSREEREEILEGF 134
Query: 422 RIGRASILVSQYN 434
R GR +VS
Sbjct: 135 RTGRFRAIVSSQV 147
>d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 299
Score = 33.4 bits (76), Expect = 0.084
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 372 SERTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLN 419
T F+ + R A+ + S+R G + V ++ ++E +
Sbjct: 33 LADKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQ 80
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 32.0 bits (71), Expect = 0.14
Identities = 28/147 (19%), Positives = 56/147 (38%), Gaps = 6/147 (4%)
Query: 347 IVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAIH 406
+ Q +++EK+ KL LL ++ +IFV++ ++ + + + + + A+AIH
Sbjct: 2 LQQYYVKLKDNEKNRKLFDLLDV---LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIH 58
Query: 407 GNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQKR 466
Q+ER +F+ + I + R + I + +
Sbjct: 59 RGMPQEERLSRYQQFKDFQRRI---LVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV 115
Query: 467 DRVLNEFRIGRASILVSHYNKSQQERD 493
R G A VS N ++ D
Sbjct: 116 ARAGRFGTKGLAITFVSDENDAKILND 142
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 31.6 bits (70), Expect = 0.19
Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 9/155 (5%)
Query: 345 HNIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVA 404
I Q +E +K + L L S+ + ++ IIF + + + + + + + G++
Sbjct: 5 KGITQYYAFVEERQKLHCLNTLFSK---LQINQAIIFCNSTNRVELLAKKITDLGYSCYY 61
Query: 405 IHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQYKESQQ 464
H QQER++V +EFR G+ R + + +
Sbjct: 62 SHARMKQQERNKVFHEFRQGKVRT---LVCSDLLTRGIDIQAVNVVINFDFPKTAETYLH 118
Query: 465 KRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 499
+ R R G + ++ N + + + +
Sbjct: 119 RIGRS---GRFGHLGLAINLINWNDRFNLYKIEQE 150
>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 288
Score = 32.1 bits (72), Expect = 0.23
Identities = 25/216 (11%), Positives = 71/216 (32%), Gaps = 11/216 (5%)
Query: 318 KEVQKLAEDFLVDYV----QLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQGLLSQIGSE 373
K+++ L++ + + + N+ ++ D +HE + + SQI
Sbjct: 44 KQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQHEVISEN--MASQI-IV 100
Query: 374 RTSKTIIFVETKRKADDITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQ- 432
++ + ++ +RK++ + S++ +R E +
Sbjct: 101 DLARYVQELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDA 160
Query: 433 -YNKSQQERDRVLNEFRIGRASILVS--QYKESQQKRDRVLNEFRIGRASILVSHYNKSQ 489
N ++ + ++ + +I S Y QK + +E+ + + +
Sbjct: 161 DINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNIFQKIQEME 220
Query: 490 QERDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF 525
+ R + E A + + D ++
Sbjct: 221 ERRIVRMGESMKTYAEVDRQVIPIIGKCLDGIVKAA 256
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 30.4 bits (67), Expect = 0.42
Identities = 24/153 (15%), Positives = 47/153 (30%), Gaps = 19/153 (12%)
Query: 165 GCDLVAIAKTGSGKTLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDF 224
G V G+GKT ++ + + LVLAPTR + +++
Sbjct: 7 GMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMK------ 53
Query: 225 GSATATRVACVFGGAPKGPQVKALQTGAEIVIATPGRLIDYLEQGTINLHRTSYLVLDEA 284
A +G E++ A + Y + +++DEA
Sbjct: 54 ------EAFHGLDVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEA 107
Query: 285 DRMLDMGFEPQIRKIIGQIRPDRQVLMWSATWP 317
+ + + ++ +AT P
Sbjct: 108 HFLDPASIAARGWAAHRARANESATILMTATPP 140
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 29.8 bits (67), Expect = 1.1
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLM 311
L+ L+LDEA LD+ E I++ + + DR L+
Sbjct: 170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLI 208
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 29.5 bits (65), Expect = 1.2
Identities = 29/167 (17%), Positives = 56/167 (33%), Gaps = 18/167 (10%)
Query: 346 NIVQIVDVCQEHEKDYKLQGLLSQIGSERTSKTIIFVETKRKADDITRSVRNKGWAAVAI 405
+++ D + K + L+ + +E ++F T+R A+ + V
Sbjct: 12 GTLELFDGAFSTSRRVKFEELVEECVAENGG-VLVFESTRRGAEKTAVKLSAITAKYVEN 70
Query: 406 HG------NKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRIGRASILVSQY 459
G +++ E R L E R +R V + FR G ++V+
Sbjct: 71 EGLEKAILEENEGEMSRKLAE--CVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATP 128
Query: 460 KESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEF--RIGRA 504
+ R I+ S Y + ++E+ GRA
Sbjct: 129 TLAAGV-------NLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRA 168
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 29.4 bits (66), Expect = 1.5
Identities = 27/163 (16%), Positives = 55/163 (33%), Gaps = 25/163 (15%)
Query: 171 IAKTGSGK-TLGYIAPAIVHVNSQRPLRSGEGPIVLVLAPTRELAQQIETVANDFGSATA 229
+ ++GSGK T+ + ++ L G L L Q+ V+ +
Sbjct: 47 VGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL---ASLRNQVALVSQNVHLFND 103
Query: 230 TRVACVFGGAPKGPQVKALQTGAEIVIAT------PGRLIDYLEQGTINL---------- 273
T + + + ++ A + A L + + + L
Sbjct: 104 TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAI 163
Query: 274 -----HRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLM 311
+ L+LDEA LD E I+ + +++ +R L+
Sbjct: 164 ARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLV 206
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Length = 458
Score = 29.1 bits (65), Expect = 2.4
Identities = 16/125 (12%), Positives = 41/125 (32%), Gaps = 15/125 (12%)
Query: 390 DITRSVRNKGWAAVAIHGNKSQQERDRVLNEFRIGRASILVSQYNKSQQERDRVLNEFRI 449
DI R ++ W + + E K E + E
Sbjct: 307 DILRLKKDCNWRTALV--VEELGEEIASQIRAL---------PIEKKIGEAMAIKKELEQ 355
Query: 450 GRASILVSQYKESQQKRDRVLNEFRIGRASILVSHYNKSQQERDRVLNEFRIGRASILVS 509
+ ES Q+ D+ +++ ++ +++ + ++ QE++ N + + +
Sbjct: 356 KYVDLCTRSIDESSQQYDQEIHDLQLQISTVDLQI-SRLLQEQNSFYNP-KWE--RVFRA 411
Query: 510 HYNKS 514
+S
Sbjct: 412 GAEES 416
>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD
{Bacillus subtilis [TaxId: 1423]}
Length = 249
Score = 27.5 bits (60), Expect = 5.4
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 125 RPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGW 159
R I+ + + + +I E AP++I Q
Sbjct: 12 RSIRSYTDEPVAQEQLDQIIEAVQSAPSSINGQQV 46
>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase
{Escherichia coli, major form, NfsA [TaxId: 562]}
Length = 240
Score = 27.4 bits (60), Expect = 6.0
Identities = 6/35 (17%), Positives = 11/35 (31%)
Query: 125 RPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGW 159
R I+HF + + I ++ Q
Sbjct: 12 RSIRHFTDEPISEAQREAIINSARATSSSSFLQCS 46
>d2bopa_ d.58.8.1 (A:) Papillomavirus-1 E2 protein {Bovine
papillomavirus type 1 [TaxId: 10559]}
Length = 85
Score = 25.8 bits (57), Expect = 6.2
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 474 RIGRASILVSHYNKSQQERDRVLNEFRI 501
R G+A IL++ + SQ R L +
Sbjct: 45 RQGQAQILITFGSPSQ--RQDFLKHVPL 70
Score = 25.8 bits (57), Expect = 6.2
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 500 RIGRASILVSHYNKSQQERDRVLNEFRI 527
R G+A IL++ + SQ R L +
Sbjct: 45 RQGQAQILITFGSPSQ--RQDFLKHVPL 70
Score = 25.8 bits (57), Expect = 6.2
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 526 RIGRASILVSHYNKSQQERDRVLNEFRI 553
R G+A IL++ + SQ R L +
Sbjct: 45 RQGQAQILITFGSPSQ--RQDFLKHVPL 70
Score = 25.8 bits (57), Expect = 6.2
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 552 RIGRASILVSHYNKSQQERDRVLNEFRI 579
R G+A IL++ + SQ R L +
Sbjct: 45 RQGQAQILITFGSPSQ--RQDFLKHVPL 70
Score = 25.8 bits (57), Expect = 6.2
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 578 RIGRASILVSHYNKSQQERDRVLNEFRI 605
R G+A IL++ + SQ R L +
Sbjct: 45 RQGQAQILITFGSPSQ--RQDFLKHVPL 70
Score = 25.8 bits (57), Expect = 6.2
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 604 RIGRASILVSHYNKSQQERDRVLNEFRI 631
R G+A IL++ + SQ R L +
Sbjct: 45 RQGQAQILITFGSPSQ--RQDFLKHVPL 70
Score = 25.8 bits (57), Expect = 6.2
Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 630 RIGRASILVSHYNKSQQERDRVLNEFRI 657
R G+A IL++ + SQ R L +
Sbjct: 45 RQGQAQILITFGSPSQ--RQDFLKHVPL 70
>d2bzea1 b.34.21.1 (A:345-476) RNA polymerase-associated protein
RTF1 homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 132
Score = 26.7 bits (59), Expect = 6.2
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 331 YVQLNIGSLNPTANHNIVQIVDVCQEHEKDYKLQG 365
+V++ IG+ N + + +I V E K Y+L G
Sbjct: 34 FVRIGIGNHNSKPVYRVAEITGVV-ETAKVYQLGG 67
>d1bkja_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase)
{Vibrio harveyi [TaxId: 669]}
Length = 239
Score = 27.4 bits (60), Expect = 6.3
Identities = 7/35 (20%), Positives = 12/35 (34%)
Query: 125 RPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGW 159
R I+ F + I + G A ++ Q
Sbjct: 11 RSIRKFTAVPITDEQRQTIIQAGLAASSSSMLQVV 45
>d1noxa_ d.90.1.1 (A:) NADH oxidase {Thermus thermophilus, HB8
[TaxId: 274]}
Length = 200
Score = 27.2 bits (59), Expect = 6.9
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 125 RPIQHFEECNFPPYIMKKIYEMGFQAPTAIQAQGWPI 161
R I+ + + P ++++I E +AP+A Q W I
Sbjct: 13 RSIRRYRKDPVPEGLLREILEAALRAPSAWNLQPWRI 49
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 26.8 bits (59), Expect = 8.8
Identities = 9/43 (20%), Positives = 21/43 (48%)
Query: 273 LHRTSYLVLDEADRMLDMGFEPQIRKIIGQIRPDRQVLMWSAT 315
L VLD+ +D + ++ K I +I ++ +++ S+
Sbjct: 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 183
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.396
Gapped
Lambda K H
0.267 0.0624 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,790,897
Number of extensions: 130193
Number of successful extensions: 469
Number of sequences better than 10.0: 1
Number of HSP's gapped: 428
Number of HSP's successfully gapped: 54
Length of query: 779
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 687
Effective length of database: 1,144,436
Effective search space: 786227532
Effective search space used: 786227532
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)