BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17913
(121 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q501J6|DDX17_MOUSE Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17
PE=2 SV=1
Length = 650
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM 43
GTAY FFTPGN + A++L+ VL EANQ++ P L ++
Sbjct: 437 GTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 472
>sp|Q92841|DDX17_HUMAN Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17
PE=1 SV=2
Length = 729
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM 43
GTAY FFTPGN + A++L+ VL EANQ++ P L ++
Sbjct: 516 GTAYTFFTPGNLKQARELIKVLEEANQAINPKLMQL 551
>sp|P19109|DDX17_DROME ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62
PE=1 SV=3
Length = 719
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS 47
GT++AFFT NA+ AK LVDVL EANQ + PAL +++ S
Sbjct: 628 GTSFAFFTKNNAKQAKALVDVLREANQEINPALENLARNS 667
>sp|P24782|DBP2_SCHPO ATP-dependent RNA helicase dbp2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dbp2 PE=2 SV=2
Length = 550
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSA 48
GTAY +FT NA+ A++LV +L EA Q + P L EM++ S+
Sbjct: 467 GTAYTYFTSDNAKQARELVSILSEAKQDIDPKLEEMARYSS 507
>sp|Q9C718|RH20_ARATH DEAD-box ATP-dependent RNA helicase 20 OS=Arabidopsis thaliana
GN=RH20 PE=1 SV=1
Length = 501
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 29/41 (70%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSA 48
GTAY FFT NAR AK+L ++L EA Q V+P L+ M + +A
Sbjct: 442 GTAYTFFTVANARFAKELTNILQEAGQKVSPELASMGRSTA 482
>sp|P17844|DDX5_HUMAN Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5
PE=1 SV=1
Length = 614
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
GTAY FFTP N + L+ VL EANQ++ P L ++ +
Sbjct: 439 GTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476
>sp|A5A6J2|DDX5_PANTR Probable ATP-dependent RNA helicase DDX5 OS=Pan troglodytes GN=DDX5
PE=2 SV=1
Length = 614
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
GTAY FFTP N + L+ VL EANQ++ P L ++ +
Sbjct: 439 GTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476
>sp|Q4R6M5|DDX5_MACFA Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis
GN=DDX5 PE=2 SV=1
Length = 614
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
GTAY FFTP N + L+ VL EANQ++ P L ++ +
Sbjct: 439 GTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476
>sp|Q5R4I9|DDX5_PONAB Probable ATP-dependent RNA helicase DDX5 OS=Pongo abelii GN=DDX5
PE=2 SV=1
Length = 614
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
GTAY FFTP N + L+ VL EANQ++ P L ++ +
Sbjct: 439 GTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476
>sp|Q61656|DDX5_MOUSE Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus GN=Ddx5
PE=1 SV=2
Length = 614
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
GTAY FFTP N + L+ VL EANQ++ P L ++ +
Sbjct: 439 GTAYTFFTPNNIKQVSDLISVLREANQAINPKLLQLVE 476
>sp|Q5QMN3|RH20_ORYSJ DEAD-box ATP-dependent RNA helicase 20 OS=Oryza sativa subsp.
japonica GN=Os01g0197200 PE=3 SV=2
Length = 494
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 5/61 (8%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGF-SRFNVSGG 66
GTAY FFT NAR AK L+++L EA Q V+P L+ M + G +SG R+ GG
Sbjct: 434 GTAYTFFTAANARFAKDLINILEEAGQKVSPELANMGR----GAPPPSSGHRDRYRGYGG 489
Query: 67 G 67
G
Sbjct: 490 G 490
>sp|Q7SBC6|DBP2_NEUCR ATP-dependent RNA helicase dbp-2 OS=Neurospora crassa (strain ATCC
24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)
GN=dbp-2 PE=3 SV=2
Length = 562
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS 47
GTA FFT N++ A++LV VL EA Q + P L+EM++ S
Sbjct: 479 GTAITFFTTDNSKQARELVGVLQEAKQQIDPRLAEMARYS 518
>sp|Q1DP69|DBP2_COCIM ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis (strain RS)
GN=DBP2 PE=3 SV=2
Length = 545
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
GTA FT NA+ A+ LV++L E+ Q + P L+EM++
Sbjct: 473 GTAITLFTTDNAKQARDLVNILTESKQQIDPRLAEMAR 510
>sp|A2QC74|DBP2_ASPNC ATP-dependent RNA helicase dbp2 OS=Aspergillus niger (strain CBS
513.88 / FGSC A1513) GN=dbp2 PE=3 SV=1
Length = 565
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS 47
GTA FFT N++ A+ LV +L EA Q + P L+EM + S
Sbjct: 482 GTAITFFTTDNSKQARDLVTILTEAKQQIDPRLAEMVRYS 521
>sp|Q6FP38|DBP1_CANGA ATP-dependent RNA helicase DBP1 OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DBP1 PE=3 SV=1
Length = 604
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/112 (33%), Positives = 51/112 (45%), Gaps = 17/112 (15%)
Query: 7 IGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSA---MGLYNKNSGFSRFNV 63
+G A +FF + AK+L+D+L EANQ V L M Q S G N +G +R
Sbjct: 492 VGVATSFFNSNSMNIAKELMDLLTEANQEVPQFLVNMVQDSMRFGRGGRNSRTGSNR--- 548
Query: 64 SGGGGGGGGYKRKNTDDYGSDGT-----RAKSGR-----WDQSSSGGYGGAA 105
G G Y+ N DD+GS G+ R+ R W SS G+ A
Sbjct: 549 -GRGSNTRDYRHSNKDDWGSLGSSRRGFRSNDNRGFGNNWGSSSGDGFTNKA 599
>sp|Q5N7W4|RH30_ORYSJ DEAD-box ATP-dependent RNA helicase 30 OS=Oryza sativa subsp.
japonica GN=Os01g0911100 PE=2 SV=2
Length = 666
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ-MSAMG 50
GTA+ FFT NA+ ++ LV +L EA Q V PAL M++ S+MG
Sbjct: 594 GTAFTFFTLSNAKFSRNLVKILREAGQVVNPALESMAKSASSMG 637
>sp|Q5B0J9|DBP2_EMENI ATP-dependent RNA helicase dbp2 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=dbp2
PE=3 SV=1
Length = 563
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS 47
GTA FFT NA+ A+ LV +L EA Q + P L+EM + S
Sbjct: 485 GTAITFFTTDNAKQARDLVTILSEAKQQIDPRLAEMVRYS 524
>sp|Q4X195|DBP2_ASPFU ATP-dependent RNA helicase dbp2 OS=Neosartorya fumigata (strain
ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=dbp2
PE=3 SV=2
Length = 547
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS 47
GTA FFT N++ A+ LV +L EA Q + P L+EM++ S
Sbjct: 466 GTAITFFTTENSKQARDLVTILTEAKQQIDPRLAEMARYS 505
>sp|Q2U070|DBP2_ASPOR ATP-dependent RNA helicase dbp2 OS=Aspergillus oryzae (strain ATCC
42149 / RIB 40) GN=dbp2 PE=3 SV=1
Length = 554
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS 47
GTA FFT N++ A+ LV +L EA Q + P L+EM + S
Sbjct: 475 GTAITFFTTDNSKQARDLVTILTEAKQQIDPRLAEMVRYS 514
>sp|A1C6C4|DBP2_ASPCL ATP-dependent RNA helicase dbp2 OS=Aspergillus clavatus (strain
ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1)
GN=dbp2 PE=3 SV=1
Length = 549
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM 43
GTA FFT N++ A+ LV +L EA Q + P L+EM
Sbjct: 470 GTAITFFTTDNSKQARDLVTILTEAKQQIDPRLAEM 505
>sp|A1DGZ7|DBP2_NEOFI ATP-dependent RNA helicase dbp2 OS=Neosartorya fischeri (strain
ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=dbp2
PE=3 SV=1
Length = 545
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS 47
GTA FFT N++ A+ LV +L EA Q + P L+EM + S
Sbjct: 464 GTAITFFTTENSKQARDLVTILTEAKQQIDPRLAEMVRYS 503
>sp|Q2H720|DBP2_CHAGB ATP-dependent RNA helicase DBP2 OS=Chaetomium globosum (strain ATCC
6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL 1970)
GN=DBP2 PE=3 SV=1
Length = 562
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM 43
GTA FFT N++ A+ LV VL EA Q + P L+EM
Sbjct: 483 GTAITFFTTDNSKQARDLVGVLQEAKQHIDPRLAEM 518
>sp|A6SFW7|DBP2_BOTFB ATP-dependent RNA helicase dbp2 OS=Botryotinia fuckeliana (strain
B05.10) GN=dbp2 PE=3 SV=2
Length = 514
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
GTA FT N + A+ LV+VL EA Q + P L+EM+
Sbjct: 447 GTAITLFTTDNQKQARDLVNVLTEAKQVIDPRLAEMT 483
>sp|A7E449|DBP2_SCLS1 ATP-dependent RNA helicase dbp2 OS=Sclerotinia sclerotiorum (strain
ATCC 18683 / 1980 / Ss-1) GN=dbp2 PE=3 SV=1
Length = 572
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 25/38 (65%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
GTA FT N + A+ LV+VL EA Q + P L+EM++
Sbjct: 494 GTAITLFTTDNQKQARDLVNVLTEAKQVIDPRLAEMTR 531
>sp|Q4PHU9|DBP2_USTMA ATP-dependent RNA helicase DBP2 OS=Ustilago maydis (strain 521 /
FGSC 9021) GN=DBP2 PE=3 SV=2
Length = 552
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM 43
GTAY +FTP N++ A++L+ +L EA Q + + EM
Sbjct: 474 GTAYTYFTPENSKSARELIGILREAKQEIPREIEEM 509
>sp|A4QSS5|DBP2_MAGO7 ATP-dependent RNA helicase DBP2 OS=Magnaporthe oryzae (strain 70-15
/ ATCC MYA-4617 / FGSC 8958) GN=DBP2 PE=3 SV=1
Length = 548
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
GTA FFT N++ A+ L+ VL EA Q + P L+EM+
Sbjct: 472 GTAITFFTTENSKQARDLLGVLQEAKQEIDPRLAEMA 508
>sp|Q4IF76|DBP2_GIBZE ATP-dependent RNA helicase DBP2 OS=Gibberella zeae (strain PH-1 /
ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=DBP2 PE=3
SV=1
Length = 555
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 7 IGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
+GTA FT N + A+ LV+VL EA Q + P L EM+
Sbjct: 478 MGTAITLFTTDNQKQARDLVNVLQEAKQQIDPRLVEMT 515
>sp|Q8W4R3|RH30_ARATH DEAD-box ATP-dependent RNA helicase 30 OS=Arabidopsis thaliana
GN=RH30 PE=2 SV=2
Length = 591
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM 43
G A+ FFT NA+ A++LV +L EA Q V P LS +
Sbjct: 508 GMAFTFFTHDNAKFARELVKILQEAGQVVPPTLSAL 543
>sp|Q6C4D4|DBP2_YARLI ATP-dependent RNA helicase DBP2 OS=Yarrowia lipolytica (strain CLIB
122 / E 150) GN=DBP2 PE=3 SV=1
Length = 552
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM 43
GTAY +FT N + A+ L+ +L EA Q + P L EM
Sbjct: 461 GTAYTYFTEDNRKQARDLLVILREAKQHIDPKLEEM 496
>sp|Q75B50|DED1_ASHGO ATP-dependent RNA helicase DED1 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DED1
PE=3 SV=2
Length = 623
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
G A AFF GN K+LVD+L EANQ V LS++++
Sbjct: 500 GLATAFFNRGNKNVVKELVDILEEANQEVPSFLSQIAK 537
>sp|Q6BU54|DED1_DEBHA ATP-dependent RNA helicase DED1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DED1 PE=3 SV=1
Length = 630
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 7 IGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMG 50
IG A AFF N K LVD+L EANQ + L+++++ SA G
Sbjct: 510 IGIATAFFNRNNKNIVKGLVDLLTEANQEIPDFLNKIARESAFG 553
>sp|A6RGE3|DBP2_AJECN ATP-dependent RNA helicase DBP2 OS=Ajellomyces capsulata (strain
NAm1 / WU24) GN=DBP2 PE=3 SV=1
Length = 542
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQ 45
GTA FT NA+ A+ LV +L E+ Q + P L+EM++
Sbjct: 471 GTAITLFTTDNAKQARDLVAILSESKQQIDPRLAEMAR 508
>sp|P0CQ76|DBP2_CRYNJ ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DBP2 PE=3 SV=1
Length = 540
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
GT+Y +FT N++ A++LV +L E+ + P L EM+
Sbjct: 454 GTSYTYFTMDNSKAARELVQILRESKADIPPELEEMA 490
>sp|P0CQ77|DBP2_CRYNB ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DBP2 PE=3 SV=1
Length = 540
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
GT+Y +FT N++ A++LV +L E+ + P L EM+
Sbjct: 454 GTSYTYFTMDNSKAARELVQILRESKADIPPELEEMA 490
>sp|Q9LYJ9|RH46_ARATH DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana
GN=RH46 PE=2 SV=2
Length = 645
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
G AY FF +A+HA L+ +L ANQ V P + EM+
Sbjct: 503 GLAYTFFGDQDAKHASDLIKILEGANQKVPPQVREMA 539
>sp|Q59LU0|DBP2_CANAL ATP-dependent RNA helicase DBP2 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DBP2 PE=3 SV=2
Length = 562
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS 47
GTA +FFT GN++ L ++ EANQ+V P L + S
Sbjct: 472 GTAISFFTEGNSKLGGDLCKIMREANQTVPPELQRFDRRS 511
>sp|P0CQ74|DED1_CRYNJ ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DED1 PE=3 SV=1
Length = 637
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 7 IGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
+GT+ AFF GN K L+++L EANQ V L E+S
Sbjct: 519 VGTSTAFFNRGNTNIGKDLIELLKEANQEVPQWLVEIS 556
>sp|P0CQ75|DED1_CRYNB ATP-dependent RNA helicase ded1 OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DED1 PE=3 SV=1
Length = 637
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%)
Query: 7 IGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
+GT+ AFF GN K L+++L EANQ V L E+S
Sbjct: 519 VGTSTAFFNRGNTNIGKDLIELLKEANQEVPQWLVEIS 556
>sp|Q5VQL1|RH14_ORYSJ DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp.
japonica GN=Os01g0172200 PE=2 SV=1
Length = 708
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGG 67
G AY FF ++++A LV +L ANQSV+ L +M G ++ S + GG
Sbjct: 522 GVAYTFFCDQDSKYASDLVKILEGANQSVSQQLRDMVSRGGYGGRSRRWASSD-DSYGGR 580
Query: 68 GGGGGYKRKNTDDYGS 83
G GY ++TD+Y S
Sbjct: 581 GYDSGYTSRSTDNYNS 596
>sp|A7TKR8|DED1_VANPO ATP-dependent RNA helicase DED1 OS=Vanderwaltozyma polyspora
(strain ATCC 22028 / DSM 70294) GN=DED1 PE=3 SV=1
Length = 650
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFN 62
G A AFF GN K + ++L EANQ + P L+++ + S G + SGFS N
Sbjct: 515 GVATAFFNRGNRNIVKGMYELLAEANQEIPPFLNDVMRESGRG--GRTSGFSSRN 567
>sp|P46942|DB10_NICSY ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana
sylvestris PE=2 SV=1
Length = 607
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
G AY FF+ +++HA LV VL ANQ V L +M+
Sbjct: 487 GLAYTFFSDQDSKHALDLVKVLEGANQCVPTELRDMA 523
>sp|A6ZWD3|DBP1_YEAS7 ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
YJM789) GN=DBP1 PE=3 SV=1
Length = 617
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSA--------MGLYN-KNSGF 58
G A +FF N K L+++L EANQ V LS++S+ ++ G +N +N+G
Sbjct: 509 GVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLSRQNSRGGRTRGGGGFFNSRNNGS 568
Query: 59 SRFNVSGGGGGGGGYKRKNT 78
+ GG G G + +NT
Sbjct: 569 RDYRKHGGNGSFGSTRPRNT 588
>sp|P24784|DBP1_YEAST ATP-dependent RNA helicase DBP1 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=DBP1 PE=1 SV=2
Length = 617
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 9/80 (11%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSA--------MGLYN-KNSGF 58
G A +FF N K L+++L EANQ V LS++S+ ++ G +N +N+G
Sbjct: 509 GVATSFFNSNNQNIVKGLMEILNEANQEVPTFLSDLSRQNSRGGRTRGGGGFFNSRNNGS 568
Query: 59 SRFNVSGGGGGGGGYKRKNT 78
+ GG G G + +NT
Sbjct: 569 RDYRKHGGNGSFGSTRPRNT 588
>sp|Q8H136|RH14_ARATH DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana
GN=RH14 PE=1 SV=2
Length = 619
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
G A+ FF +++HA L+ +L ANQ V P + EM+
Sbjct: 500 GQAFTFFGDQDSKHASDLIKILEGANQRVPPQIREMA 536
>sp|P24346|DDX3_XENLA Putative ATP-dependent RNA helicase an3 OS=Xenopus laevis GN=an3
PE=2 SV=1
Length = 697
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 7 IGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
+G A +FF N K L+D+L+EA Q V L M+
Sbjct: 579 LGLATSFFNEKNINITKDLLDLLVEAKQEVPSWLENMA 616
>sp|Q6GVM6|DDX3Y_PANTR ATP-dependent RNA helicase DDX3Y OS=Pan troglodytes GN=DDX3Y PE=2
SV=1
Length = 660
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 7 IGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
+G A +FF N K L+D+L+EA Q V L M+
Sbjct: 536 LGLATSFFNEKNINITKDLLDLLVEAKQEVPSWLENMA 573
>sp|A5DZE6|DED1_LODEL ATP-dependent RNA helicase DED1 OS=Lodderomyces elongisporus
(strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 /
NRRL YB-4239) GN=DED1 PE=3 SV=1
Length = 664
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 7 IGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSA 48
+G A AFF N K ++D+L EANQ V L+++++ SA
Sbjct: 529 VGIATAFFNRNNKNIVKGMLDLLTEANQEVPDFLNKIARESA 570
>sp|Q5RF43|DDX3Y_PONAB ATP-dependent RNA helicase DDX3Y OS=Pongo abelii GN=DDX3Y PE=2 SV=1
Length = 658
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 7 IGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMS 44
+G A +FF N K L+D+L+EA Q V L M+
Sbjct: 536 LGLATSFFNEKNMNITKDLLDLLVEAKQEVPSWLENMA 573
>sp|Q9SQV1|RH40_ARATH DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana
GN=RH40 PE=2 SV=1
Length = 1088
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 33/67 (49%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGG 67
G A+ FFT + ++A L+ VL ANQ V P + +++ G S R V+
Sbjct: 777 GVAFTFFTEQDWKYAPDLIKVLEGANQQVPPQVRDIAMRGGGGGGPGYSQDRRGMVNRFD 836
Query: 68 GGGGGYK 74
GGGG +
Sbjct: 837 SGGGGTR 843
>sp|Q5A4E2|DED1_CANAL ATP-dependent RNA helicase DED1 OS=Candida albicans (strain SC5314
/ ATCC MYA-2876) GN=DED1 PE=3 SV=1
Length = 672
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 26/44 (59%)
Query: 7 IGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMG 50
+G A AFF N K L+++L EANQ V L+++++ A G
Sbjct: 540 VGIATAFFNRNNKNVVKGLIELLSEANQEVPDFLTKIAREGAFG 583
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.132 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,880,169
Number of Sequences: 539616
Number of extensions: 2270451
Number of successful extensions: 21748
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 398
Number of HSP's that attempted gapping in prelim test: 12961
Number of HSP's gapped (non-prelim): 5538
length of query: 121
length of database: 191,569,459
effective HSP length: 88
effective length of query: 33
effective length of database: 144,083,251
effective search space: 4754747283
effective search space used: 4754747283
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)