Query psy17913
Match_columns 121
No_of_seqs 188 out of 1133
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 17:21:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 98.5 6.1E-08 2.1E-12 79.0 4.8 42 2-43 392-434 (434)
2 2jgn_A DBX, DDX3, ATP-dependen 98.4 4.8E-07 1.6E-11 66.4 5.4 46 2-47 138-183 (185)
3 2p6n_A ATP-dependent RNA helic 98.2 9.1E-07 3.1E-11 65.5 4.6 44 2-45 146-190 (191)
4 2i4i_A ATP-dependent RNA helic 98.2 2E-06 6.8E-11 67.6 5.4 48 2-49 368-415 (417)
5 1fuk_A Eukaryotic initiation f 96.6 0.0003 1E-08 49.8 -0.5 42 2-43 122-163 (165)
6 3eiq_A Eukaryotic initiation f 96.3 0.00094 3.2E-08 52.1 1.2 42 2-43 372-413 (414)
7 1s2m_A Putative ATP-dependent 94.9 0.0064 2.2E-07 47.3 0.9 41 2-42 350-390 (400)
8 2rb4_A ATP-dependent RNA helic 94.9 0.0096 3.3E-07 42.3 1.7 37 2-38 132-168 (175)
9 1t5i_A C_terminal domain of A 94.8 0.007 2.4E-07 43.3 0.8 41 2-42 123-164 (172)
10 2j0s_A ATP-dependent RNA helic 94.6 0.0043 1.5E-07 48.5 -0.7 40 2-41 368-407 (410)
11 1fuu_A Yeast initiation factor 93.8 0.011 3.7E-07 45.6 0.0 42 2-43 351-392 (394)
12 1xti_A Probable ATP-dependent 92.2 0.034 1.2E-06 42.8 0.6 40 2-41 342-382 (391)
13 3eaq_A Heat resistant RNA depe 91.9 0.075 2.6E-06 39.1 2.2 35 2-36 123-157 (212)
14 3i32_A Heat resistant RNA depe 89.2 0.21 7.1E-06 39.4 2.7 31 2-32 120-150 (300)
15 2yjt_D ATP-dependent RNA helic 87.8 0.096 3.3E-06 36.9 0.0 34 2-35 122-155 (170)
16 3fht_A ATP-dependent RNA helic 87.7 0.24 8.3E-06 38.1 2.1 42 2-43 364-407 (412)
17 1yks_A Genome polyprotein [con 87.0 0.5 1.7E-05 38.5 3.7 39 2-40 283-325 (440)
18 2whx_A Serine protease/ntpase/ 85.7 0.54 1.9E-05 40.5 3.4 39 2-40 462-504 (618)
19 2wp7_A PPPDE peptidase domain- 83.6 0.36 1.2E-05 36.0 1.2 38 7-46 97-134 (168)
20 3fmp_B ATP-dependent RNA helic 83.2 0.23 7.9E-06 40.0 0.0 37 2-38 431-468 (479)
21 3fho_A ATP-dependent RNA helic 81.6 0.55 1.9E-05 38.7 1.7 39 2-40 455-494 (508)
22 3i5x_A ATP-dependent RNA helic 79.5 1.3 4.5E-05 36.2 3.3 29 2-30 434-462 (563)
23 3sqw_A ATP-dependent RNA helic 76.8 1.8 6E-05 36.0 3.3 28 2-29 383-410 (579)
24 3oiy_A Reverse gyrase helicase 73.5 1.8 6.1E-05 33.9 2.4 22 7-30 355-376 (414)
25 3pey_A ATP-dependent RNA helic 73.5 1.7 6E-05 32.8 2.3 36 2-37 341-378 (395)
26 2wv9_A Flavivirin protease NS2 63.0 5.3 0.00018 34.8 3.4 37 2-38 517-557 (673)
27 3t46_A SCIN-D; secreted, virul 62.4 4.1 0.00014 27.7 2.1 30 5-34 1-33 (91)
28 1tf5_A Preprotein translocase 59.0 11 0.00037 34.4 4.8 18 2-19 530-547 (844)
29 2jlq_A Serine protease subunit 57.3 8.6 0.00029 31.1 3.5 39 2-40 295-337 (451)
30 1oyw_A RECQ helicase, ATP-depe 53.2 9.6 0.00033 31.6 3.3 26 2-27 328-353 (523)
31 1zl8_A LIN-7; heterodimer, alp 50.4 8.6 0.00029 23.7 1.9 28 18-45 8-35 (53)
32 3t7y_A YOP proteins translocat 49.0 9.8 0.00034 25.8 2.2 27 18-45 61-87 (97)
33 1gku_B Reverse gyrase, TOP-RG; 46.7 17 0.00058 33.1 4.0 30 2-31 434-468 (1054)
34 1nkt_A Preprotein translocase 45.9 33 0.0011 31.7 5.7 45 1-45 601-654 (922)
35 2fsf_A Preprotein translocase 44.6 14 0.00048 33.8 3.1 45 1-45 567-620 (853)
36 2xzm_T RPS19E; ribosome, trans 42.6 9.1 0.00031 28.3 1.3 32 10-41 4-39 (155)
37 3jux_A Protein translocase sub 42.4 27 0.00094 31.9 4.6 44 2-45 572-624 (822)
38 2z83_A Helicase/nucleoside tri 40.6 21 0.00071 28.9 3.3 16 2-17 297-313 (459)
39 2v1x_A ATP-dependent DNA helic 39.2 13 0.00046 31.5 2.0 25 2-26 359-383 (591)
40 2xzm_O RPS13E; ribosome, trans 37.7 27 0.00092 25.8 3.2 23 24-46 72-96 (153)
41 3a1y_A 50S ribosomal protein P 37.2 46 0.0016 20.2 3.8 29 19-47 16-45 (58)
42 2lbf_A 60S acidic ribosomal pr 36.9 38 0.0013 21.4 3.5 29 19-47 22-51 (69)
43 3u5c_N S27A, YS15, 40S ribosom 36.5 29 0.00099 25.5 3.2 23 24-46 70-94 (151)
44 3op0_A Signal transduction pro 35.8 27 0.00093 28.6 3.2 38 9-46 266-318 (323)
45 4asv_A Small glutamine-rich te 34.1 37 0.0013 23.0 3.2 29 13-41 14-44 (92)
46 2lbf_B 60S acidic ribosomal pr 33.8 42 0.0014 21.3 3.3 28 19-46 18-46 (70)
47 1eot_A Eotaxin; cytokine, chem 33.2 42 0.0014 20.9 3.2 27 9-35 37-71 (74)
48 4gl2_A Interferon-induced heli 32.6 42 0.0014 28.0 4.0 18 1-18 502-519 (699)
49 3o8b_A HCV NS3 protease/helica 32.0 19 0.00065 31.7 1.9 27 2-30 501-531 (666)
50 1dok_A MCP-1, MCAF, monocyte c 31.7 44 0.0015 21.0 3.2 27 9-35 40-74 (77)
51 2ra4_A Small-inducible cytokin 30.4 22 0.00074 22.5 1.5 29 9-37 39-75 (76)
52 1vmc_A Stromal cell-derived fa 30.0 63 0.0022 19.7 3.7 23 9-31 40-70 (71)
53 1mp1_A Ser/Arg-related nuclear 29.6 18 0.00061 25.1 1.0 30 13-42 69-102 (111)
54 4ddu_A Reverse gyrase; topoiso 29.5 56 0.0019 30.1 4.6 22 10-31 483-504 (1104)
55 2ykg_A Probable ATP-dependent 29.1 13 0.00044 31.1 0.3 33 6-38 505-541 (696)
56 3c01_E Surface presentation of 28.7 30 0.001 23.4 2.0 26 18-44 46-71 (98)
57 3bzy_B ESCU; auto cleavage pro 28.5 24 0.00081 23.1 1.4 26 18-44 46-71 (83)
58 3tbk_A RIG-I helicase domain; 28.3 16 0.00055 28.9 0.7 19 3-22 494-512 (555)
59 2yxb_A Coenzyme B12-dependent 28.2 59 0.002 22.8 3.7 25 9-33 73-97 (161)
60 1kdl_A YOPD protein; yersinia, 27.7 39 0.0013 17.9 1.9 15 20-34 2-16 (26)
61 2d7d_A Uvrabc system protein B 27.7 63 0.0021 27.7 4.4 26 2-27 539-566 (661)
62 1sn9_A BBAT, tetrameric beta-B 26.8 37 0.0013 17.7 1.7 16 19-34 7-22 (26)
63 2l74_A Putative uncharacterize 26.6 46 0.0016 23.1 2.8 41 6-46 100-142 (145)
64 3t0y_B NEPR; sigma factor, ant 26.2 49 0.0017 21.3 2.6 30 18-47 31-61 (68)
65 3u5c_T 40S ribosomal protein S 24.4 43 0.0015 24.3 2.3 23 19-41 12-35 (144)
66 1ha6_A Macrophage inflammatory 24.0 81 0.0028 19.2 3.3 26 9-34 35-68 (70)
67 1zpv_A ACT domain protein; str 23.7 69 0.0024 19.4 3.0 28 9-36 6-33 (91)
68 2yh5_A DAPX protein, BAMC; lip 23.4 93 0.0032 21.5 3.9 25 8-32 88-116 (127)
69 3b1s_B Flagellar biosynthetic 29.0 17 0.00059 24.0 0.0 27 17-44 45-71 (87)
70 2i2x_B MTAC, methyltransferase 23.3 73 0.0025 24.0 3.6 29 9-37 178-206 (258)
71 1vmj_A Hypothetical protein TM 23.2 59 0.002 23.6 2.9 18 15-32 65-82 (151)
72 1ve0_A Hypothetical protein (S 22.9 65 0.0022 22.7 3.0 19 14-32 50-68 (134)
73 1vph_A Hypothetical protein SS 22.8 64 0.0022 23.3 3.0 18 15-32 65-82 (149)
74 2lxb_A Small glutamine-rich te 22.8 84 0.0029 20.3 3.3 25 17-41 6-32 (74)
75 2lfw_B NEPR anti sigma factor; 22.5 31 0.0011 21.8 1.1 28 18-45 25-53 (62)
76 2p6h_A Hypothetical protein; s 22.4 67 0.0023 22.6 3.0 19 14-32 50-68 (134)
77 1ccw_A Protein (glutamate muta 22.0 49 0.0017 22.5 2.2 26 9-34 58-83 (137)
78 2p6c_A AQ_2013 protein; NPPSFA 21.8 66 0.0023 22.8 2.9 20 14-33 52-71 (137)
79 1vq8_2 50S ribosomal protein L 21.5 81 0.0028 19.0 2.8 16 30-45 16-31 (50)
80 2vt1_B Surface presentation of 21.4 21 0.00072 24.0 0.1 25 18-43 46-70 (93)
81 2nz7_A NOD1, caspase recruitme 21.2 29 0.001 23.2 0.8 23 19-41 72-97 (98)
82 3hj7_A TRNA(Ile)-lysidine synt 21.1 24 0.00083 25.0 0.4 20 23-44 74-93 (142)
83 3j20_Q 30S ribosomal protein S 20.3 33 0.0011 25.3 1.0 24 22-45 75-100 (158)
84 2juz_A UPF0352 protein HI0840; 20.2 82 0.0028 20.8 2.8 24 19-42 13-36 (80)
85 3izc_t 60S acidic ribosomal pr 20.1 1.1E+02 0.0038 20.8 3.6 27 20-46 21-48 (106)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=98.54 E-value=6.1e-08 Score=79.03 Aligned_cols=42 Identities=29% Similarity=0.331 Sum_probs=37.4
Q ss_pred CCCCCceeEEEeeCC-CChhHHHHHHHHHHHcCCCCChHHHHH
Q psy17913 2 SSQCFIGTAYAFFTP-GNARHAKQLVDVLIEANQSVTPALSEM 43 (121)
Q Consensus 2 ~RaG~~G~AiTFft~-~n~~~a~dLv~lL~ea~QeVP~~L~~~ 43 (121)
+|+|++|.||+||++ ++..++++|+++|++++|+||+||++|
T Consensus 392 gR~g~~G~a~~~~~~~~~~~~~~~l~~~l~~~~~~vp~~l~~~ 434 (434)
T 2db3_A 392 GRVGNNGRATSFFDPEKDRAIAADLVKILEGSGQTVPDFLRTC 434 (434)
T ss_dssp SCTTCCEEEEEEECTTTCGGGHHHHHHHHHHTTCCCCGGGC--
T ss_pred ccCCCCCEEEEEEeccccHHHHHHHHHHHHHcCCCCCHHHHhC
Confidence 688899999999995 588999999999999999999999875
No 2
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=98.36 E-value=4.8e-07 Score=66.44 Aligned_cols=46 Identities=33% Similarity=0.422 Sum_probs=41.3
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHHhc
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS 47 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~~ 47 (121)
+|.|++|.||+|+++.+..++++|+++|+...|+||+||.+||.+.
T Consensus 138 ~R~g~~g~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~~~a~~~ 183 (185)
T 2jgn_A 138 GRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEH 183 (185)
T ss_dssp CCTTSCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHC--
T ss_pred CCCCCCcEEEEEEchhhHHHHHHHHHHHHhccCCCCHHHHHHHHHc
Confidence 4667789999999999999999999999999999999999998753
No 3
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=98.24 E-value=9.1e-07 Score=65.50 Aligned_cols=44 Identities=25% Similarity=0.325 Sum_probs=37.4
Q ss_pred CCCCCceeEEEeeCCC-ChhHHHHHHHHHHHcCCCCChHHHHHHH
Q psy17913 2 SSQCFIGTAYAFFTPG-NARHAKQLVDVLIEANQSVTPALSEMSQ 45 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~-n~~~a~dLv~lL~ea~QeVP~~L~~~a~ 45 (121)
+|+|++|.||+|+++. +..++++|.++|+++.|+||+||.+|++
T Consensus 146 gR~g~~g~~i~l~~~~~~~~~~~~l~~~l~~~~~~~p~~l~~~~~ 190 (191)
T 2p6n_A 146 GCSGNTGIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVLHC 190 (191)
T ss_dssp CC---CCEEEEEECTTSCHHHHHHHHHHHHHTTCCCCHHHHSTTC
T ss_pred ccCCCCcEEEEEEcCchhHHHHHHHHHHHHHccCcCCHHHHhhcC
Confidence 5667789999999986 7889999999999999999999998864
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=98.17 E-value=2e-06 Score=67.57 Aligned_cols=48 Identities=31% Similarity=0.398 Sum_probs=42.3
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHHhccC
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAM 49 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~~~~ 49 (121)
+|.|++|.|++|++++|..++++|+++|+++.++||+||++|+.++..
T Consensus 368 gR~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~ 415 (417)
T 2i4i_A 368 GRVGNLGLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHY 415 (417)
T ss_dssp CC--CCEEEEEEECGGGGGGHHHHHHHHHHTTCCCCHHHHHHHTCSCC
T ss_pred ccCCCCceEEEEEccccHHHHHHHHHHHHHhcCcCCHHHHHHHHhhhc
Confidence 466677999999999999999999999999999999999999987653
No 5
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=96.55 E-value=0.0003 Score=49.82 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=32.9
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHH
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM 43 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~ 43 (121)
+|+|++|.+++|+++++...+++|.++|....+++|.+|.+|
T Consensus 122 gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (165)
T 1fuk_A 122 GRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL 163 (165)
T ss_dssp C-----CEEEEEEETTTHHHHHHHHHHSSCCCEECCSCCTTT
T ss_pred ccCCCCceEEEEEcchHHHHHHHHHHHHccCccccCccHHhh
Confidence 355667999999999999999999999999999999877654
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=96.35 E-value=0.00094 Score=52.05 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=29.2
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHH
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM 43 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~ 43 (121)
+|+|++|.|++|+++++...+++|.++|....+++|.+|.++
T Consensus 372 gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 413 (414)
T 3eiq_A 372 GRFGRKGVAINMVTEEDKRTLRDIETFYNTSIEEMPLNVADL 413 (414)
T ss_dssp -------CEEEEECSTHHHHHHHHHHHTTCCCEECCC-----
T ss_pred cCCCCCceEEEEEcHHHHHHHHHHHHHHcCCccccChhhhhc
Confidence 355667999999999999999999999999999999998876
No 7
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.94 E-value=0.0064 Score=47.31 Aligned_cols=41 Identities=7% Similarity=0.065 Sum_probs=34.9
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHH
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSE 42 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~ 42 (121)
+|.|++|.+|+|++++|...+++|.+.|...-+++|.++.+
T Consensus 350 gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 390 (400)
T 1s2m_A 350 GRFGHLGLAINLINWNDRFNLYKIEQELGTEIAAIPATIDK 390 (400)
T ss_dssp SCTTCCEEEEEEECGGGHHHHHHHHHHHTCCCEECCSSCCG
T ss_pred cCCCCCceEEEEeccchHHHHHHHHHHhCCCcccccccccc
Confidence 46677899999999999999999999888888888887654
No 8
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=94.87 E-value=0.0096 Score=42.26 Aligned_cols=37 Identities=8% Similarity=0.065 Sum_probs=28.0
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCCh
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTP 38 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~ 38 (121)
+|+|+.|.||+|+++.+...+++|.+.|...-+++|.
T Consensus 132 gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 168 (175)
T 2rb4_A 132 GRFGKKGLAFNMIEVDELPSLMKIQDHFNSSIKQLNA 168 (175)
T ss_dssp ----CCEEEEEEECGGGHHHHHHHHHHHTCCCEEECS
T ss_pred ccCCCCceEEEEEccchHHHHHHHHHHhcCcccccCC
Confidence 4667789999999999988889998888776666664
No 9
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=94.79 E-value=0.007 Score=43.28 Aligned_cols=41 Identities=12% Similarity=0.093 Sum_probs=31.2
Q ss_pred CCCCCceeEEEeeCCC-ChhHHHHHHHHHHHcCCCCChHHHH
Q psy17913 2 SSQCFIGTAYAFFTPG-NARHAKQLVDVLIEANQSVTPALSE 42 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~-n~~~a~dLv~lL~ea~QeVP~~L~~ 42 (121)
+|.|++|.+++|+++. +..++++|.+.|...-+++|.+|..
T Consensus 123 ~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 164 (172)
T 1t5i_A 123 GRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI 164 (172)
T ss_dssp TGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC-----
T ss_pred ccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhhch
Confidence 5778899999999986 5678899999998888889988654
No 10
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=94.64 E-value=0.0043 Score=48.54 Aligned_cols=40 Identities=10% Similarity=0.091 Sum_probs=34.7
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHH
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALS 41 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~ 41 (121)
+|.|++|++|+|++++|..++++|.+.+...-.++|..+.
T Consensus 368 gR~g~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 407 (410)
T 2j0s_A 368 GRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVA 407 (410)
T ss_dssp SGGGCCEEEEEEEEGGGHHHHHHHHHHTTCCCEECCSCCT
T ss_pred cCCCCceEEEEEecHHHHHHHHHHHHHhCCCceecccchh
Confidence 4667889999999999999999999999988888886543
No 11
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=93.84 E-value=0.011 Score=45.56 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=0.0
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHH
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEM 43 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~ 43 (121)
+|.|++|.+++|+++++...+++|.+.+...-.++|..+.++
T Consensus 351 ~R~g~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (394)
T 1fuu_A 351 GRFGRKGVAINFVTNEDVGAMRELEKFYSTQIEELPSDIATL 392 (394)
T ss_dssp ------------------------------------------
T ss_pred cCCCCCceEEEEEchhHHHHHHHHHHHhCCcccccCcchhhh
Confidence 455677999999999999999999999999888999887765
No 12
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.16 E-value=0.034 Score=42.76 Aligned_cols=40 Identities=13% Similarity=0.117 Sum_probs=33.2
Q ss_pred CCCCCceeEEEeeCCC-ChhHHHHHHHHHHHcCCCCChHHH
Q psy17913 2 SSQCFIGTAYAFFTPG-NARHAKQLVDVLIEANQSVTPALS 41 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~-n~~~a~dLv~lL~ea~QeVP~~L~ 41 (121)
+|.|++|.+++|+++. +..++++|.+.|....+++|.++.
T Consensus 342 ~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (391)
T 1xti_A 342 GRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID 382 (391)
T ss_dssp SSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCCEECCSCCC
T ss_pred cCCCCceEEEEEEcccchHHHHHHHHHHhcCChhhCCcccc
Confidence 4667789999999986 567889999999888889998743
No 13
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=91.87 E-value=0.075 Score=39.13 Aligned_cols=35 Identities=14% Similarity=0.137 Sum_probs=26.9
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCCC
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSV 36 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~QeV 36 (121)
+|+|+.|.+++|+++.+..+++.|.+.++..-+++
T Consensus 123 gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~ 157 (212)
T 3eaq_A 123 GRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRV 157 (212)
T ss_dssp CCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEEC
T ss_pred CCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeec
Confidence 56677899999999999999999988887654443
No 14
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=89.22 E-value=0.21 Score=39.40 Aligned_cols=31 Identities=13% Similarity=0.138 Sum_probs=21.1
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHHHHHHc
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEA 32 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea 32 (121)
+|+|+.|.||+|+++.+..+++.|.+.+...
T Consensus 120 gR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~ 150 (300)
T 3i32_A 120 GRAGRGGRVVLLYGPRERRDVEALERAVGRR 150 (300)
T ss_dssp C-----CEEEEEECSSTHHHHHHHHHHHTCC
T ss_pred CcCCCCceEEEEeChHHHHHHHHHHHHhCCc
Confidence 5667789999999999988888777766543
No 15
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=87.83 E-value=0.096 Score=36.88 Aligned_cols=34 Identities=12% Similarity=0.038 Sum_probs=27.1
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHHHHHHcCCC
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQS 35 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ea~Qe 35 (121)
+|+|++|.+++|+++.+..++++|.+.|...-++
T Consensus 122 ~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (170)
T 2yjt_D 122 ARAGRKGTAISLVEAHDHLLLGKVGRYIEEPIKA 155 (170)
Confidence 4667789999999999998989988877655443
No 16
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=87.70 E-value=0.24 Score=38.10 Aligned_cols=42 Identities=10% Similarity=0.080 Sum_probs=28.8
Q ss_pred CCCCCceeEEEeeCCCC-hhHHHHHHHHHHHcCCCCCh-HHHHH
Q psy17913 2 SSQCFIGTAYAFFTPGN-ARHAKQLVDVLIEANQSVTP-ALSEM 43 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n-~~~a~dLv~lL~ea~QeVP~-~L~~~ 43 (121)
+|+++.|.+++|+++++ ..+++.|.+.|.....+++. +++++
T Consensus 364 gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 407 (412)
T 3fht_A 364 GRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDTDDLDEI 407 (412)
T ss_dssp SCTTCCEEEEEEECSHHHHHHHHHHHHHHTCCCEEC--------
T ss_pred cCCCCCceEEEEEcChhhHHHHHHHHHHHCCccccCCCccHHHH
Confidence 45667899999999864 78888999988877777764 34443
No 17
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=87.04 E-value=0.5 Score=38.51 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCC-CCceeEEEee---CCCChhHHHHHHHHHHHcCCCCChHH
Q psy17913 2 SSQ-CFIGTAYAFF---TPGNARHAKQLVDVLIEANQSVTPAL 40 (121)
Q Consensus 2 ~Ra-G~~G~AiTFf---t~~n~~~a~dLv~lL~ea~QeVP~~L 40 (121)
+|+ +++|.||+|+ ++.+..+++.|.+.|..+++++|.++
T Consensus 283 GR~g~~~g~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~ 325 (440)
T 1yks_A 283 GRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDNMEVRGGM 325 (440)
T ss_dssp SCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTTSCCGGGC
T ss_pred CCCCCCCceEEEEeccCChhhhhhhhhhhHHhccccccccccc
Confidence 454 4578999996 78888999999999988888887543
No 18
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=85.70 E-value=0.54 Score=40.51 Aligned_cols=39 Identities=13% Similarity=0.104 Sum_probs=30.9
Q ss_pred CCCCC-ceeEEEeeC---CCChhHHHHHHHHHHHcCCCCChHH
Q psy17913 2 SSQCF-IGTAYAFFT---PGNARHAKQLVDVLIEANQSVTPAL 40 (121)
Q Consensus 2 ~RaG~-~G~AiTFft---~~n~~~a~dLv~lL~ea~QeVP~~L 40 (121)
+|++. +|.||+|++ ++|..+++.|.+.|+-.+.++|..+
T Consensus 462 GR~g~~~G~ai~l~~~~~~~d~~~l~~le~~i~l~~~~~~~~~ 504 (618)
T 2whx_A 462 GRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 504 (618)
T ss_dssp SCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred CCCCCCCCeEEEEccCCchhhHHHHHHHHhHhccccccCCcch
Confidence 45543 789999998 7888999999998888777776543
No 19
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=83.63 E-value=0.36 Score=36.04 Aligned_cols=38 Identities=13% Similarity=0.365 Sum_probs=28.9
Q ss_pred ceeEEEeeCCCChhHHHHHHHHHHHcCCCCChHHHHHHHh
Q psy17913 7 IGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQM 46 (121)
Q Consensus 7 ~G~AiTFft~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~ 46 (121)
++.+|.+|+.+.-.+..+|++.|. ...||.|+.+||.+
T Consensus 97 ~g~~Y~Ll~~NCNhFs~~l~~~L~--gk~IP~wInrl~~~ 134 (168)
T 2wp7_A 97 RGEAYNLFEHNCNTFSNEVAQFLT--GRKIPSYITDLPSE 134 (168)
T ss_dssp SGGGCBTTTBSHHHHHHHHHHHHH--SCCCCHHHHTHHHH
T ss_pred CcccCchhhhccchhHHHHHHHhc--CCCCcHHHHHHHHH
Confidence 345566666666677888888886 66999999999975
No 20
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=83.23 E-value=0.23 Score=40.01 Aligned_cols=37 Identities=5% Similarity=-0.002 Sum_probs=0.0
Q ss_pred CCCCCceeEEEeeCCCC-hhHHHHHHHHHHHcCCCCCh
Q psy17913 2 SSQCFIGTAYAFFTPGN-ARHAKQLVDVLIEANQSVTP 38 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n-~~~a~dLv~lL~ea~QeVP~ 38 (121)
+|+++.|.||+|+++.+ ..+++.|.+.|...-++++.
T Consensus 431 gR~g~~G~~i~~~~~~~~~~~~~~i~~~~~~~~~~l~~ 468 (479)
T 3fmp_B 431 GRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKIERLDT 468 (479)
T ss_dssp --------------------------------------
T ss_pred ccCCCCceEEEEEcCcchHHHHHHHHHHhCCCceECCC
Confidence 45667899999999764 77888888888877777765
No 21
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=81.63 E-value=0.55 Score=38.70 Aligned_cols=39 Identities=8% Similarity=0.047 Sum_probs=23.9
Q ss_pred CCCCCceeEEEeeCC-CChhHHHHHHHHHHHcCCCCChHH
Q psy17913 2 SSQCFIGTAYAFFTP-GNARHAKQLVDVLIEANQSVTPAL 40 (121)
Q Consensus 2 ~RaG~~G~AiTFft~-~n~~~a~dLv~lL~ea~QeVP~~L 40 (121)
+|+++.|.+++|+++ ++...+.+|.+.+....+++|.+.
T Consensus 455 gR~g~~g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~~~~ 494 (508)
T 3fho_A 455 GRFGRVGVSINFVHDKKSWEEMNAIQEYFQRPITRVPTDD 494 (508)
T ss_dssp C-----CEEEEEECTTTSSSSHHHHHHHSCCCCC------
T ss_pred CCCCCCcEEEEEEeChHHHHHHHHHHHHHCCCcccCCCcc
Confidence 355667999999985 577888999999988888888643
No 22
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=79.53 E-value=1.3 Score=36.19 Aligned_cols=29 Identities=14% Similarity=0.142 Sum_probs=24.4
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHHHHH
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVDVLI 30 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL~ 30 (121)
+|+|+.|.||+|+++.+..+++.|.+.+.
T Consensus 434 gR~g~~g~~i~~~~~~e~~~~~~l~~~~~ 462 (563)
T 3i5x_A 434 ARSGKEGSSVLFICKDELPFVRELEDAKN 462 (563)
T ss_dssp SCTTCCEEEEEEEEGGGHHHHHHHHHHHC
T ss_pred ccCCCCceEEEEEchhHHHHHHHHHHHhC
Confidence 56778899999999999888888877654
No 23
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=76.75 E-value=1.8 Score=36.04 Aligned_cols=28 Identities=14% Similarity=0.181 Sum_probs=22.9
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHHHH
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVDVL 29 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~lL 29 (121)
+|+|+.|.||+|+++.+..+++.|++.+
T Consensus 383 gR~g~~g~~i~~~~~~e~~~~~~l~~~~ 410 (579)
T 3sqw_A 383 ARSGKEGSSVLFICKDELPFVRELEDAK 410 (579)
T ss_dssp SCTTCCEEEEEEEEGGGHHHHHHHHHHH
T ss_pred ccCCCCceEEEEEcccHHHHHHHHHHHh
Confidence 5778889999999999888887776543
No 24
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=73.54 E-value=1.8 Score=33.89 Aligned_cols=22 Identities=18% Similarity=0.193 Sum_probs=19.3
Q ss_pred ceeEEEeeCCCChhHHHHHHHHHH
Q psy17913 7 IGTAYAFFTPGNARHAKQLVDVLI 30 (121)
Q Consensus 7 ~G~AiTFft~~n~~~a~dLv~lL~ 30 (121)
+|+||+|+ .|..++..|.+.|.
T Consensus 355 ~g~~i~~~--~~~~~~~~l~~~~~ 376 (414)
T 3oiy_A 355 KGVSVIFE--EDEEIFESLKTRLL 376 (414)
T ss_dssp CEEEEEEC--CCHHHHHHHHHHHH
T ss_pred ceEEEEEE--ccHHHHHHHHHHhc
Confidence 78999999 67888899999888
No 25
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=73.53 E-value=1.7 Score=32.84 Aligned_cols=36 Identities=14% Similarity=-0.001 Sum_probs=23.7
Q ss_pred CCCCCceeEEEeeCCCC-hhHHHHHHHHHH-HcCCCCC
Q psy17913 2 SSQCFIGTAYAFFTPGN-ARHAKQLVDVLI-EANQSVT 37 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n-~~~a~dLv~lL~-ea~QeVP 37 (121)
+|.|++|.+++|+++.+ ..+...|.+.+. ..-.++|
T Consensus 341 gR~g~~g~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 378 (395)
T 3pey_A 341 GRFGRKGVAISFVHDKNSFNILSAIQKYFGDIEMTRVP 378 (395)
T ss_dssp SCTTCCEEEEEEECSHHHHHHHHHHHHHTTSCCCEECC
T ss_pred ccCCCCceEEEEEechHHHHHHHHHHHHhCCceeecCC
Confidence 46667899999999754 556666666665 2333444
No 26
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=63.05 E-value=5.3 Score=34.82 Aligned_cols=37 Identities=14% Similarity=0.151 Sum_probs=26.3
Q ss_pred CCC-CCceeEEEee---CCCChhHHHHHHHHHHHcCCCCCh
Q psy17913 2 SSQ-CFIGTAYAFF---TPGNARHAKQLVDVLIEANQSVTP 38 (121)
Q Consensus 2 ~Ra-G~~G~AiTFf---t~~n~~~a~dLv~lL~ea~QeVP~ 38 (121)
+|+ ++.|.||+|+ ++++..++++|...+.-...++|+
T Consensus 517 GR~~g~~G~ai~l~~~~~~~d~~~l~~ie~~~~l~~~~~~~ 557 (673)
T 2wv9_A 517 GRNPSQIGDEYHYGGGTSEDDTMLAHWTEAKILLDNIHLPN 557 (673)
T ss_dssp SCCSSCCCEEEEECSCCCCCCTTBHHHHHHHHHHHTSCBTT
T ss_pred CCCCCCCCEEEEEEecCChhHHHHHHHHHHHHhhhhccCCc
Confidence 455 5678999996 677888888888766554445543
No 27
>3t46_A SCIN-D; secreted, virulence, immune system; 1.50A {Staphylococcus aureus subsp}
Probab=62.43 E-value=4.1 Score=27.65 Aligned_cols=30 Identities=13% Similarity=0.120 Sum_probs=15.1
Q ss_pred CCceeEEEeeCCC---ChhHHHHHHHHHHHcCC
Q psy17913 5 CFIGTAYAFFTPG---NARHAKQLVDVLIEANQ 34 (121)
Q Consensus 5 G~~G~AiTFft~~---n~~~a~dLv~lL~ea~Q 34 (121)
|.+|+..+.+|.. |..+|.+|..||.+.+-
T Consensus 1 ~~~~~~~s~~T~~~y~dq~la~eL~~Ll~~~nv 33 (91)
T 3t46_A 1 GSTGSSKSETTSHTYQHQALVDQLHELIANTDL 33 (91)
T ss_dssp ----------------CHHHHHHHHHHHHTTCG
T ss_pred CCCCcccchhhhHHHHHHHHHHHHHHHHHhccH
Confidence 4578888888874 89999999999998764
No 28
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=58.99 E-value=11 Score=34.41 Aligned_cols=18 Identities=11% Similarity=0.076 Sum_probs=16.2
Q ss_pred CCCCCceeEEEeeCCCCh
Q psy17913 2 SSQCFIGTAYAFFTPGNA 19 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~ 19 (121)
+|+|++|+|++|++++|.
T Consensus 530 GRqG~~G~s~~~vs~eD~ 547 (844)
T 1tf5_A 530 GRQGDPGITQFYLSMEDE 547 (844)
T ss_dssp SGGGCCEEEEEEEETTSS
T ss_pred ccCCCCCeEEEEecHHHH
Confidence 789999999999998874
No 29
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=57.26 E-value=8.6 Score=31.12 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=24.0
Q ss_pred CCCCC-ceeEEEeeCCC---ChhHHHHHHHHHHHcCCCCChHH
Q psy17913 2 SSQCF-IGTAYAFFTPG---NARHAKQLVDVLIEANQSVTPAL 40 (121)
Q Consensus 2 ~RaG~-~G~AiTFft~~---n~~~a~dLv~lL~ea~QeVP~~L 40 (121)
+|+++ .+.+|.|+.+. +..++.-+...|+..++++|.|+
T Consensus 295 GR~g~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 337 (451)
T 2jlq_A 295 GRNPAQEDDQYVFSGDPLKNDEDHAHWTEAKMLLDNIYTPEGI 337 (451)
T ss_dssp SCCTTCCCEEEEECSCCCCCCTTCHHHHHHHHHHTTCCCTTCC
T ss_pred CCCCCCCccEEEEeCCchhhcchhHHHHHHHHHHhcCCChhHh
Confidence 34454 56788776432 23444444556667788998776
No 30
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=53.23 E-value=9.6 Score=31.62 Aligned_cols=26 Identities=12% Similarity=0.337 Sum_probs=20.0
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHHH
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLVD 27 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv~ 27 (121)
+|.|+.+.|+.|+++.|...++.|++
T Consensus 328 GR~g~~~~~~l~~~~~d~~~~~~~~~ 353 (523)
T 1oyw_A 328 GRDGLPAEAMLFYDPADMAWLRRCLE 353 (523)
T ss_dssp CTTSSCEEEEEEECHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEeCHHHHHHHHHHHh
Confidence 45566789999999988877766665
No 31
>1zl8_A LIN-7; heterodimer, alpha helix, scaffold, assembly, specifici signaling, protein binding; NMR {Caenorhabditis elegans} SCOP: a.194.1.1
Probab=50.43 E-value=8.6 Score=23.71 Aligned_cols=28 Identities=11% Similarity=0.258 Sum_probs=20.3
Q ss_pred ChhHHHHHHHHHHHcCCCCChHHHHHHH
Q psy17913 18 NARHAKQLVDVLIEANQSVTPALSEMSQ 45 (121)
Q Consensus 18 n~~~a~dLv~lL~ea~QeVP~~L~~~a~ 45 (121)
|.+-|-+|++.|+.+.+..|+.|+.+-+
T Consensus 8 Dv~RaiELle~lq~sgevp~~KL~aLq~ 35 (53)
T 1zl8_A 8 DVQRILELMEHVQKTGEVNNAKLASLQQ 35 (53)
T ss_dssp HHHHHHHHHHHHGGGSSSTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 4556778888887777666678887754
No 32
>3t7y_A YOP proteins translocation protein U; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta; 2.10A {Chlamydia trachomatis} SCOP: d.367.1.0
Probab=48.96 E-value=9.8 Score=25.78 Aligned_cols=27 Identities=22% Similarity=0.112 Sum_probs=16.3
Q ss_pred ChhHHHHHHHHHHHcCCCCChHHHHHHH
Q psy17913 18 NARHAKQLVDVLIEANQSVTPALSEMSQ 45 (121)
Q Consensus 18 n~~~a~dLv~lL~ea~QeVP~~L~~~a~ 45 (121)
|+.+|+.|.+-+ +-+|+||++|-+...
T Consensus 61 ~~~LAr~L~~~~-~ig~~IP~ely~aVA 87 (97)
T 3t7y_A 61 NVPLAHQLLDEG-KELKFIPETTYEAVG 87 (97)
T ss_dssp CHHHHHHHHHHC-CBTSBCCHHHHHHHH
T ss_pred CHHHHHHHHHcC-CCCCccCHHHHHHHH
Confidence 455555555322 568899988765443
No 33
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=46.68 E-value=17 Score=33.14 Aligned_cols=30 Identities=7% Similarity=0.071 Sum_probs=24.5
Q ss_pred CCCCC---ce--eEEEeeCCCChhHHHHHHHHHHH
Q psy17913 2 SSQCF---IG--TAYAFFTPGNARHAKQLVDVLIE 31 (121)
Q Consensus 2 ~RaG~---~G--~AiTFft~~n~~~a~dLv~lL~e 31 (121)
||+++ .| .+++|+.++|..++..|.+.|+.
T Consensus 434 GRagR~g~~g~~~g~~~~~~~d~~~~~~l~~~l~~ 468 (1054)
T 1gku_B 434 GRTSRLFAGGLTKGASFLLEDDSELLSAFIERAKL 468 (1054)
T ss_dssp HTTCCEETTEECCEEEEEECSCHHHHHHHHHHHHT
T ss_pred chhhhccCCCCceEEEEEEecCHHHHHHHHHHHhh
Confidence 45555 55 49999999999999999999885
No 34
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=45.94 E-value=33 Score=31.70 Aligned_cols=45 Identities=13% Similarity=0.157 Sum_probs=28.6
Q ss_pred CCCCCCceeEEEeeCCCChhH---H-HHHHHHHHHcC----CCC-ChHHHHHHH
Q psy17913 1 MSSQCFIGTAYAFFTPGNARH---A-KQLVDVLIEAN----QSV-TPALSEMSQ 45 (121)
Q Consensus 1 ~~RaG~~G~AiTFft~~n~~~---a-~dLv~lL~ea~----QeV-P~~L~~~a~ 45 (121)
.+|+|++|.|++|++.+|.-+ . ..+..+|+... .+| .+||....+
T Consensus 601 TGRqGdpG~s~fflSleD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~ie 654 (922)
T 1nkt_A 601 SGRQGDPGESRFYLSLGDELMRRFNGAALETLLTRLNLPDDVPIEAKMVTRAIK 654 (922)
T ss_dssp SSGGGCCEEEEEEEETTSHHHHHTTHHHHHHHHHHTTCCTTSCCCCHHHHHHHH
T ss_pred cccCCCCeeEEEEechhHHHHHHhhhHHHHHHHHHhCCCCCcccccHHHHHHHH
Confidence 379999999999999887633 2 23455555443 233 356665543
No 35
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=44.55 E-value=14 Score=33.78 Aligned_cols=45 Identities=9% Similarity=0.178 Sum_probs=27.4
Q ss_pred CCCCCCceeEEEeeCCCChhH----HHHHHHHHHHc----CCCCC-hHHHHHHH
Q psy17913 1 MSSQCFIGTAYAFFTPGNARH----AKQLVDVLIEA----NQSVT-PALSEMSQ 45 (121)
Q Consensus 1 ~~RaG~~G~AiTFft~~n~~~----a~dLv~lL~ea----~QeVP-~~L~~~a~ 45 (121)
.+|+|++|.|++|++.+|.-+ ...+..+|+.. ..+|. +|+..+.+
T Consensus 567 TGRqGd~G~s~~fls~eD~l~r~f~~~~~~~~~~~~~~~~~~~i~~~~~~~~i~ 620 (853)
T 2fsf_A 567 SGRQGDAGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVTKAIA 620 (853)
T ss_dssp SSGGGCCEEEEEEEETTSGGGGTTCCHHHHTTGGGGCCCTTCCCCCHHHHHHHH
T ss_pred cccCCCCeeEEEEecccHHHHHHhhHHHHHHHHHhhCCCCccccchHHHHHHHH
Confidence 378999999999999887533 22344444433 23343 46555443
No 36
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=42.62 E-value=9.1 Score=28.28 Aligned_cols=32 Identities=25% Similarity=0.328 Sum_probs=21.1
Q ss_pred EEEeeCCCC---hhHHHHHHHHHHHcCC-CCChHHH
Q psy17913 10 AYAFFTPGN---ARHAKQLVDVLIEANQ-SVTPALS 41 (121)
Q Consensus 10 AiTFft~~n---~~~a~dLv~lL~ea~Q-eVP~~L~ 41 (121)
++.++|-.| ..+.+.|.+.|++.++ +||+|..
T Consensus 4 ~~~m~tvkDV~a~~fI~~~A~~LKk~gki~~P~W~d 39 (155)
T 2xzm_T 4 NQSFFTVKDVAAADFIREYASHLKKANKLSIPEFTQ 39 (155)
T ss_dssp --CCCCGGGSCHHHHHHHHHHHTTSSCCSCCCHHHH
T ss_pred CCCCceeeecCHHHHHHHHHHHHHhcCCCCCCchHh
Confidence 455666655 3567888888887764 6777765
No 37
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=42.35 E-value=27 Score=31.85 Aligned_cols=44 Identities=20% Similarity=0.227 Sum_probs=27.7
Q ss_pred CCCCCceeEEEeeCCCChhH---HH-HHHHHHHHc----CCCC-ChHHHHHHH
Q psy17913 2 SSQCFIGTAYAFFTPGNARH---AK-QLVDVLIEA----NQSV-TPALSEMSQ 45 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~---a~-dLv~lL~ea----~QeV-P~~L~~~a~ 45 (121)
+|+|++|.|++|++.+|.-+ +. .|.++|+.. ..+| .+|+....+
T Consensus 572 GRqG~~G~a~~fvsleD~l~r~fg~~~~~~~m~~~~~~~~~~i~~~~v~~~ie 624 (822)
T 3jux_A 572 GRQGDPGESIFFLSLEDDLLRIFGSEQIGKVMNILKIEEGQPIQHPMLSKLIE 624 (822)
T ss_dssp SCSSCCCEEEEEEETTSHHHHHTTHHHHHHHHHHSSCCSSSCBCCHHHHHHHH
T ss_pred ccCCCCeeEEEEechhHHHHHhhhHHHHHHHHHHcCCCCCceeccHHHHHHHH
Confidence 78999999999999988433 22 344455443 2334 356655543
No 38
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=40.62 E-value=21 Score=28.93 Aligned_cols=16 Identities=13% Similarity=0.198 Sum_probs=11.9
Q ss_pred CCCCC-ceeEEEeeCCC
Q psy17913 2 SSQCF-IGTAYAFFTPG 17 (121)
Q Consensus 2 ~RaG~-~G~AiTFft~~ 17 (121)
+|+++ .|.||+|+++.
T Consensus 297 GR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 297 GRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp SCCTTCCCEEEEECSCC
T ss_pred CCCCCCCCeEEEEEccc
Confidence 34554 68899999875
No 39
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=39.19 E-value=13 Score=31.50 Aligned_cols=25 Identities=8% Similarity=0.174 Sum_probs=19.4
Q ss_pred CCCCCceeEEEeeCCCChhHHHHHH
Q psy17913 2 SSQCFIGTAYAFFTPGNARHAKQLV 26 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~a~dLv 26 (121)
+|.|+.+.||.|+++.|...++.|+
T Consensus 359 GR~G~~g~~i~l~~~~D~~~~~~~~ 383 (591)
T 2v1x_A 359 GRDDMKADCILYYGFGDIFRISSMV 383 (591)
T ss_dssp CTTSSCEEEEEEECHHHHHHHHHHT
T ss_pred CcCCCCceEEEEEChHHHHHHHHHH
Confidence 4556778999999998877766665
No 40
>2xzm_O RPS13E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_O 1ysh_E 3jyv_O* 1s1h_O
Probab=37.72 E-value=27 Score=25.75 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=18.3
Q ss_pred HHHHHHHHcCC--CCChHHHHHHHh
Q psy17913 24 QLVDVLIEANQ--SVTPALSEMSQM 46 (121)
Q Consensus 24 dLv~lL~ea~Q--eVP~~L~~~a~~ 46 (121)
.|.++|++.+. |||++|..|...
T Consensus 72 kI~rILk~~glapeiPEDL~~LikK 96 (153)
T 2xzm_O 72 KILRILKKNGCAPQLPEDLYFLIKK 96 (153)
T ss_dssp CHHHHHHHTTCCCSSCHHHHHHHHH
T ss_pred hHHHHHHHcCCCCCCcHHHHHHHHH
Confidence 47789998865 899999988754
No 41
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=37.17 E-value=46 Score=20.18 Aligned_cols=29 Identities=14% Similarity=0.099 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHcCCCCCh-HHHHHHHhc
Q psy17913 19 ARHAKQLVDVLIEANQSVTP-ALSEMSQMS 47 (121)
Q Consensus 19 ~~~a~dLv~lL~ea~QeVP~-~L~~~a~~~ 47 (121)
...+.+|.++|+.++-+|.+ |+..++..-
T Consensus 16 ~~t~~~I~~il~aaGveve~~~~~~~~~~L 45 (58)
T 3a1y_A 16 EINEENLKAVLQAAGVEPEEARIKALVAAL 45 (58)
T ss_dssp CCCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 44578899999999999965 888777653
No 42
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=36.88 E-value=38 Score=21.38 Aligned_cols=29 Identities=7% Similarity=-0.022 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHcCCCCC-hHHHHHHHhc
Q psy17913 19 ARHAKQLVDVLIEANQSVT-PALSEMSQMS 47 (121)
Q Consensus 19 ~~~a~dLv~lL~ea~QeVP-~~L~~~a~~~ 47 (121)
..-+.+|.++|+.++-+|. .|+..++..-
T Consensus 22 ~~ta~~I~~il~AaGveve~~~~~lf~~aL 51 (69)
T 2lbf_A 22 TVTEDKINALIKAAGVNVEPFWPGLFAKAL 51 (69)
T ss_dssp CCCHHHHHHHHHHHTCCCCTHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHHH
Confidence 3457889999999999995 5888887753
No 43
>3u5c_N S27A, YS15, 40S ribosomal protein S13; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_O 3o30_G 3o2z_G 3u5g_N 3iz6_O 3jyv_O* 1ysh_E 1s1h_O
Probab=36.48 E-value=29 Score=25.52 Aligned_cols=23 Identities=9% Similarity=0.182 Sum_probs=18.0
Q ss_pred HHHHHHHHcCC--CCChHHHHHHHh
Q psy17913 24 QLVDVLIEANQ--SVTPALSEMSQM 46 (121)
Q Consensus 24 dLv~lL~ea~Q--eVP~~L~~~a~~ 46 (121)
.|.++|++.+. |||++|..|...
T Consensus 70 kI~rILk~~glapeiPEDL~~LikK 94 (151)
T 3u5c_N 70 KIMRILKSNGLAPEIPEDLYYLIKK 94 (151)
T ss_dssp CHHHHHHHTTCCCSSCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCcHHHHHHHHH
Confidence 46788888864 899999988753
No 44
>3op0_A Signal transduction protein CBL-C; structural genomics, structural genomics consortium, SGC, SI transduction protein, SH3-binding protein; HET: PTR; 2.52A {Homo sapiens}
Probab=35.81 E-value=27 Score=28.56 Aligned_cols=38 Identities=16% Similarity=0.282 Sum_probs=28.9
Q ss_pred eEEEeeCC---------CChhHHHHHHHHHHHc------CCCCChHHHHHHHh
Q psy17913 9 TAYAFFTP---------GNARHAKQLVDVLIEA------NQSVTPALSEMSQM 46 (121)
Q Consensus 9 ~AiTFft~---------~n~~~a~dLv~lL~ea------~QeVP~~L~~~a~~ 46 (121)
-||+|++. .|+.+...|++--+|. ...++|+|.++...
T Consensus 266 wAIgYV~s~g~I~qtip~nk~l~qaL~dG~~eg~ylyp~g~~~npdl~~l~~~ 318 (323)
T 3op0_A 266 WAIGYVSSDGSILQTIPANKPLSQVLLEGQKDGFYLYPDGKTHNPDLTELGAE 318 (323)
T ss_dssp EEEEEECTTSCEEEECCCSSCHHHHHHHHHHTTSSCEETTCSCCCCCHHHHHH
T ss_pred eEEEEEcCCCceeecCCCCcHHHHHHHhccccceeECCCCCcCCcCHHHHhhh
Confidence 49999984 4677788888777755 67888888888764
No 45
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=34.13 E-value=37 Score=22.97 Aligned_cols=29 Identities=7% Similarity=0.171 Sum_probs=21.8
Q ss_pred eeCCCChhHHHHHHHHHHHc--CCCCChHHH
Q psy17913 13 FFTPGNARHAKQLVDVLIEA--NQSVTPALS 41 (121)
Q Consensus 13 Fft~~n~~~a~dLv~lL~ea--~QeVP~~L~ 41 (121)
+++..++++|..||++|++. .-+|+++-.
T Consensus 14 ~~~~skKrLA~sIIdFL~~sv~~~~ls~D~~ 44 (92)
T 4asv_A 14 MMSASKEEIAALIVNYFSSIVEKKEISEDGA 44 (92)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHhcccCCcCHHHH
Confidence 34456788999999999877 667887533
No 46
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=33.83 E-value=42 Score=21.30 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHcCCCCC-hHHHHHHHh
Q psy17913 19 ARHAKQLVDVLIEANQSVT-PALSEMSQM 46 (121)
Q Consensus 19 ~~~a~dLv~lL~ea~QeVP-~~L~~~a~~ 46 (121)
...+.+|.++|+.++-+|. .|+..++..
T Consensus 18 ~~ta~~I~~il~aaGvevd~~~~~~~~~a 46 (70)
T 2lbf_B 18 SPSAKDIKKILDSVGIEADDDRLNKVISE 46 (70)
T ss_dssp SCCHHHHHHHHHTTTCCCCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCccHHHHHHHHHH
Confidence 4568899999999999995 588888765
No 47
>1eot_A Eotaxin; cytokine, chemokine, protein synthesis, solution structure, CCR3, eosinophil; NMR {Homo sapiens} SCOP: d.9.1.1 PDB: 2eot_A
Probab=33.20 E-value=42 Score=20.89 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=19.2
Q ss_pred eEEEeeCCC--------ChhHHHHHHHHHHHcCCC
Q psy17913 9 TAYAFFTPG--------NARHAKQLVDVLIEANQS 35 (121)
Q Consensus 9 ~AiTFft~~--------n~~~a~dLv~lL~ea~Qe 35 (121)
.||-|.|.+ +..+++++++.|.+..|.
T Consensus 37 ~aVIf~tk~g~~vC~dP~~~WVq~~i~~l~~~~~~ 71 (74)
T 1eot_A 37 KAVIFKTKLAKDICADPKKKWVQDSMKYLDQKSPT 71 (74)
T ss_dssp CEEEEEETTSCEEEECTTCHHHHHHHHHHHHHSCS
T ss_pred cEEEEEeCCCCEEeCCCChHHHHHHHHHHHHhccc
Confidence 466666543 457899999988877654
No 48
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=32.57 E-value=42 Score=27.96 Aligned_cols=18 Identities=6% Similarity=0.032 Sum_probs=15.4
Q ss_pred CCCCCCceeEEEeeCCCC
Q psy17913 1 MSSQCFIGTAYAFFTPGN 18 (121)
Q Consensus 1 ~~RaG~~G~AiTFft~~n 18 (121)
+|||++.|.+++|+++.+
T Consensus 502 ~GRArr~g~~~~l~~~~~ 519 (699)
T 4gl2_A 502 RGRARADESTYVLVAHSG 519 (699)
T ss_dssp HTTSCSSSCEEEEEEESS
T ss_pred cCCCCCCCceEEEEEeCC
Confidence 389999999999998754
No 49
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=32.04 E-value=19 Score=31.69 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=18.3
Q ss_pred CCCCCceeEEEeeCCCChhH--H--HHHHHHHH
Q psy17913 2 SSQCFIGTAYAFFTPGNARH--A--KQLVDVLI 30 (121)
Q Consensus 2 ~RaG~~G~AiTFft~~n~~~--a--~dLv~lL~ 30 (121)
+| +++|. |+|+++++... + ..|++.++
T Consensus 501 GR-g~~G~-i~lvt~~e~~~~~l~~~~i~~~~~ 531 (666)
T 3o8b_A 501 GR-GRRGI-YRFVTPGERPSGMFDSSVLCECYD 531 (666)
T ss_dssp CS-SSCEE-EEESCCCCBCSSBCCHHHHHHHHH
T ss_pred CC-CCCCE-EEEEecchhhcccccHHHHHHHhc
Confidence 45 66899 99999987655 3 55555444
No 50
>1dok_A MCP-1, MCAF, monocyte chemoattractant protein 1; cytokine,; 1.85A {Homo sapiens} SCOP: d.9.1.1 PDB: 1dol_A 1dom_A 1don_A 2bdn_A 3ifd_A 2nz1_D 1ml0_D 1bo0_A 1ncv_A
Probab=31.74 E-value=44 Score=20.97 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=18.3
Q ss_pred eEEEeeCCC--------ChhHHHHHHHHHHHcCCC
Q psy17913 9 TAYAFFTPG--------NARHAKQLVDVLIEANQS 35 (121)
Q Consensus 9 ~AiTFft~~--------n~~~a~dLv~lL~ea~Qe 35 (121)
.||-|.|.+ +..+++++++.|.+..|.
T Consensus 40 ~aVIf~tk~g~~vCadP~~~WVq~~i~~l~~~~~~ 74 (77)
T 1dok_A 40 EAVIFKTIVAKEICADPKQKWVQDSMDHLDKQTQT 74 (77)
T ss_dssp CEEEEEETTCCEEEECTTSHHHHHHHHHHHHCC--
T ss_pred cEEEEEEcCCCEEeCCCChHHHHHHHHHHHhhhcc
Confidence 466676543 467899999988877654
No 51
>2ra4_A Small-inducible cytokine A13; CCL13, MCP-4, CC chemokine family, chemotaxis, monocytes, CY inflammatory response, pyrrolidone carboxylic acid; 1.70A {Homo sapiens}
Probab=30.38 E-value=22 Score=22.49 Aligned_cols=29 Identities=14% Similarity=0.126 Sum_probs=15.3
Q ss_pred eEEEeeCCC--------ChhHHHHHHHHHHHcCCCCC
Q psy17913 9 TAYAFFTPG--------NARHAKQLVDVLIEANQSVT 37 (121)
Q Consensus 9 ~AiTFft~~--------n~~~a~dLv~lL~ea~QeVP 37 (121)
.||-|.|.+ +.++++++++.|.+..|..|
T Consensus 39 ~aVIf~tk~g~~vCadP~~~WVq~~ik~l~~~~~~~~ 75 (76)
T 2ra4_A 39 KAVIFRTKLGKEICADPKEKWVQNYMKHLGRKAHTLK 75 (76)
T ss_dssp CCEEEEETTSCEEEECTTSHHHHHHHHHHC-------
T ss_pred cEEEEEEcCCCEEeCCCChHHHHHHHHHHHhhccccC
Confidence 355566533 45789999998877665543
No 52
>1vmc_A Stromal cell-derived factor 1; CXC-chemokine, cytokine; NMR {Homo sapiens} SCOP: d.9.1.1
Probab=30.04 E-value=63 Score=19.72 Aligned_cols=23 Identities=4% Similarity=0.120 Sum_probs=16.5
Q ss_pred eEEEeeCCC--------ChhHHHHHHHHHHH
Q psy17913 9 TAYAFFTPG--------NARHAKQLVDVLIE 31 (121)
Q Consensus 9 ~AiTFft~~--------n~~~a~dLv~lL~e 31 (121)
.||-|+|.+ +.+++++|++.|.+
T Consensus 40 ~aIIf~tk~g~~vCadP~~~WVq~~i~~l~~ 70 (71)
T 1vmc_A 40 QIVARLKNNNRQVCIDPKLKWIQEYLEKALN 70 (71)
T ss_dssp EEEEEETTTTEEEEECTTCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCEEeCCCChHHHHHHHHHHHh
Confidence 678888753 45788888876654
No 53
>1mp1_A Ser/Arg-related nuclear matrix protein; four helix bundle, RNA binding protein; NMR {Homo sapiens} SCOP: a.188.1.1
Probab=29.62 E-value=18 Score=25.13 Aligned_cols=30 Identities=23% Similarity=0.383 Sum_probs=21.3
Q ss_pred eeCCCC-hhHHHHHHHHHHHcCC---CCChHHHH
Q psy17913 13 FFTPGN-ARHAKQLVDVLIEANQ---SVTPALSE 42 (121)
Q Consensus 13 Fft~~n-~~~a~dLv~lL~ea~Q---eVP~~L~~ 42 (121)
|++.++ ..++.+|.++|.++.+ =||+.|.+
T Consensus 69 FL~~e~a~~Fv~eLW~LLi~aq~~~~GIP~~~le 102 (111)
T 1mp1_A 69 FLNGKNAREFMGELWPLLLSAQENIAGIPSAFLE 102 (111)
T ss_dssp TSCSHHHHHHHHHHHHHHHHHTTSSSSCCHHHHT
T ss_pred HhCcccHHHHHHHHHHHHHHhhcCCcCcCHHHHH
Confidence 555334 5689999999998854 37877764
No 54
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=29.47 E-value=56 Score=30.09 Aligned_cols=22 Identities=9% Similarity=0.031 Sum_probs=16.6
Q ss_pred EEEeeCCCChhHHHHHHHHHHH
Q psy17913 10 AYAFFTPGNARHAKQLVDVLIE 31 (121)
Q Consensus 10 AiTFft~~n~~~a~dLv~lL~e 31 (121)
++|++..+|.+++..|.+.|+-
T Consensus 483 Glsi~~~~d~~~~~~l~~~~~~ 504 (1104)
T 4ddu_A 483 GVSVIFEEDEEIFESLKTRLLL 504 (1104)
T ss_dssp EEEEEECCCHHHHHHHHHHHHH
T ss_pred ceEEEEEecHHHHHHHHHHHhh
Confidence 4455555889999999998873
No 55
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=29.07 E-value=13 Score=31.07 Aligned_cols=33 Identities=3% Similarity=0.045 Sum_probs=20.7
Q ss_pred CceeEEEeeCCCChhHHHHH----HHHHHHcCCCCCh
Q psy17913 6 FIGTAYAFFTPGNARHAKQL----VDVLIEANQSVTP 38 (121)
Q Consensus 6 ~~G~AiTFft~~n~~~a~dL----v~lL~ea~QeVP~ 38 (121)
+.|.++.|+++.+......| .+++..+.++|+.
T Consensus 505 ~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 541 (696)
T 2ykg_A 505 RGSKCFLLTSNAGVIEKEQINMYKEKMMNDSILRLQT 541 (696)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCceEEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46889999988766444444 4455555555544
No 56
>3c01_E Surface presentation of antigens protein SPAS; auto cleavage protein, flagella, ESCU, YSCU, intein, T3SS, M inner membrane, transmembrane; 2.60A {Salmonella typhimurium} SCOP: d.367.1.1
Probab=28.66 E-value=30 Score=23.36 Aligned_cols=26 Identities=12% Similarity=0.064 Sum_probs=15.9
Q ss_pred ChhHHHHHHHHHHHcCCCCChHHHHHH
Q psy17913 18 NARHAKQLVDVLIEANQSVTPALSEMS 44 (121)
Q Consensus 18 n~~~a~dLv~lL~ea~QeVP~~L~~~a 44 (121)
|+.+|+.|.+- .+-+|+||++|-+..
T Consensus 46 ~~~LAr~Ly~~-~~ig~~IP~ely~aV 71 (98)
T 3c01_E 46 DIKLARSLFKT-HRRYDLVSLEEIDEV 71 (98)
T ss_dssp CHHHHHHHHHH-CCTTCBCCHHHHHHH
T ss_pred CHHHHHHHHHh-CCCCCccCHHHHHHH
Confidence 45555555532 255799998766543
No 57
>3bzy_B ESCU; auto cleavage protein, flagella, intein, T3SS, membrane, membrane protein, protein transport; 1.20A {Escherichia coli} SCOP: d.367.1.1 PDB: 3c00_B 3bzl_C 3bzo_B 3bzv_B 3c03_C 3bzz_B 3bzx_B
Probab=28.48 E-value=24 Score=23.07 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHHHHcCCCCChHHHHHH
Q psy17913 18 NARHAKQLVDVLIEANQSVTPALSEMS 44 (121)
Q Consensus 18 n~~~a~dLv~lL~ea~QeVP~~L~~~a 44 (121)
|+.+|+.|.+- .+-+|+||++|-+..
T Consensus 46 ~~~LAr~L~~~-~~ig~~IP~ely~aV 71 (83)
T 3bzy_B 46 DIPLARSLDKN-IHKGQYITEDFFEPV 71 (83)
T ss_dssp CHHHHHHHHHH-CCTTCBCCGGGHHHH
T ss_pred CHHHHHHHHHh-CCCCCccCHHHHHHH
Confidence 45555555532 245788888765443
No 58
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=28.31 E-value=16 Score=28.90 Aligned_cols=19 Identities=0% Similarity=-0.004 Sum_probs=14.3
Q ss_pred CCCCceeEEEeeCCCChhHH
Q psy17913 3 SQCFIGTAYAFFTPGNARHA 22 (121)
Q Consensus 3 RaG~~G~AiTFft~~n~~~a 22 (121)
|+ +.|.+|.|+++.+....
T Consensus 494 R~-~~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 494 RA-RDSKCFLLTSSADVIEK 512 (555)
T ss_dssp TT-TSCEEEEEESCHHHHHH
T ss_pred cC-CCceEEEEEcCCCHHHH
Confidence 44 67999999998765444
No 59
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=28.23 E-value=59 Score=22.83 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=20.9
Q ss_pred eEEEeeCCCChhHHHHHHHHHHHcC
Q psy17913 9 TAYAFFTPGNARHAKQLVDVLIEAN 33 (121)
Q Consensus 9 ~AiTFft~~n~~~a~dLv~lL~ea~ 33 (121)
+++|+........+++|++.|++..
T Consensus 73 V~lS~~~~~~~~~~~~~i~~L~~~g 97 (161)
T 2yxb_A 73 IGVSILNGAHLHLMKRLMAKLRELG 97 (161)
T ss_dssp EEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEeechhhHHHHHHHHHHHHhcC
Confidence 5678777777888999999999975
No 60
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.69 E-value=39 Score=17.89 Aligned_cols=15 Identities=7% Similarity=0.142 Sum_probs=11.6
Q ss_pred hHHHHHHHHHHHcCC
Q psy17913 20 RHAKQLVDVLIEANQ 34 (121)
Q Consensus 20 ~~a~dLv~lL~ea~Q 34 (121)
++++|++++|+.--|
T Consensus 2 nfMkDvlql~qQy~q 16 (26)
T 1kdl_A 2 NFMKDVLRLIEQYVS 16 (26)
T ss_dssp THHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHH
Confidence 578999999886544
No 61
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=27.68 E-value=63 Score=27.75 Aligned_cols=26 Identities=4% Similarity=-0.024 Sum_probs=19.1
Q ss_pred CCCC--CceeEEEeeCCCChhHHHHHHH
Q psy17913 2 SSQC--FIGTAYAFFTPGNARHAKQLVD 27 (121)
Q Consensus 2 ~RaG--~~G~AiTFft~~n~~~a~dLv~ 27 (121)
||++ +.|.||+|+++.+..+.+.|.+
T Consensus 539 GRagR~~~G~~i~~~~~~~~~~~~~i~~ 566 (661)
T 2d7d_A 539 GRAARNAEGRVIMYADKITKSMEIAINE 566 (661)
T ss_dssp HTTTTSTTCEEEEECSSCCHHHHHHHHH
T ss_pred CcccCCCCCEEEEEEeCCCHHHHHHHHH
Confidence 4444 4799999999988776665554
No 62
>1sn9_A BBAT, tetrameric beta-BETA-alpha mini-protein; protein design, domain swapping, oligomerization, de novo protein; HET: DBZ; 1.20A {Synthetic} SCOP: k.14.1.1 PDB: 1sna_A* 1sne_A* 1xof_B* 1xof_A*
Probab=26.83 E-value=37 Score=17.72 Aligned_cols=16 Identities=25% Similarity=0.268 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHHcCC
Q psy17913 19 ARHAKQLVDVLIEANQ 34 (121)
Q Consensus 19 ~~~a~dLv~lL~ea~Q 34 (121)
-.+|.+|.++|+++.-
T Consensus 7 ydfadelakllrqa~g 22 (26)
T 1sn9_A 7 YDFADELAKLLRQAXG 22 (26)
T ss_dssp BCHHHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHhhC
Confidence 3578999999998754
No 63
>2l74_A Putative uncharacterized protein PA4608; PILZ, C-DI-GMP, unknown function, C-DI-GMP binding P; HET: C2E; NMR {Pseudomonas aeruginosa}
Probab=26.57 E-value=46 Score=23.10 Aligned_cols=41 Identities=10% Similarity=0.081 Sum_probs=30.9
Q ss_pred CceeEEEee--CCCChhHHHHHHHHHHHcCCCCChHHHHHHHh
Q psy17913 6 FIGTAYAFF--TPGNARHAKQLVDVLIEANQSVTPALSEMSQM 46 (121)
Q Consensus 6 ~~G~AiTFf--t~~n~~~a~dLv~lL~ea~QeVP~~L~~~a~~ 46 (121)
..++++.|. +.++...++.||++.+.-...+-.+|..++..
T Consensus 100 ~~~~gl~f~~id~ds~~~L~rlIe~N~~d~~~l~rEl~~l~~~ 142 (145)
T 2l74_A 100 DGLLGFECQHIDLDSISHLRRLVELNLGDEELLERELALLVSA 142 (145)
T ss_dssp TTEEEEEEEEECHHHHHHHHHHHHHHHCSCCCCTHHHHGGGGT
T ss_pred CCEEEEEEEECCHHHHHHHHHHHHHcCCCHHHHHHHHHHHhhc
Confidence 345566665 44567778999998888888899999988764
No 64
>3t0y_B NEPR; sigma factor, anti-sigma factor, receiver domain, gene regul signal transduction, transcription regulator-protein bindin; 2.10A {Caulobacter vibrioides}
Probab=26.24 E-value=49 Score=21.27 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=21.6
Q ss_pred ChhHHHHHHHHHHHc-CCCCChHHHHHHHhc
Q psy17913 18 NARHAKQLVDVLIEA-NQSVTPALSEMSQMS 47 (121)
Q Consensus 18 n~~~a~dLv~lL~ea-~QeVP~~L~~~a~~~ 47 (121)
+..|...|.++..+. .++||+.|.+|-+.-
T Consensus 31 Q~~IG~~LR~~Yd~vv~EpVPDrFldLL~qL 61 (68)
T 3t0y_B 31 QQAIGVKLRQMFDEVVNEPVPDEFLAILRKA 61 (68)
T ss_dssp CCHHHHHHHHHTHHHHHSCCCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 355677777766554 778999998887653
No 65
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=24.37 E-value=43 Score=24.32 Aligned_cols=23 Identities=9% Similarity=0.093 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHcCC-CCChHHH
Q psy17913 19 ARHAKQLVDVLIEANQ-SVTPALS 41 (121)
Q Consensus 19 ~~~a~dLv~lL~ea~Q-eVP~~L~ 41 (121)
..+.+.|.+.|++.++ +||+|..
T Consensus 12 ~~fI~~~A~~LK~~gki~~P~W~d 35 (144)
T 3u5c_T 12 QDFINAYASFLQRQGKLEVPGYVD 35 (144)
T ss_dssp HHHHHHHHHHHHHHCCCCCTTTTT
T ss_pred HHHHHHHHHHHHHcCCCCCCchHh
Confidence 4678899999998864 6666643
No 66
>1ha6_A Macrophage inflammatory protein 3 alpha; immune system, chemiokine, mouse, CCL20/MIP-3A, defensins; NMR {Mus musculus} SCOP: d.9.1.1
Probab=24.00 E-value=81 Score=19.25 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=17.8
Q ss_pred eEEEeeCCC--------ChhHHHHHHHHHHHcCC
Q psy17913 9 TAYAFFTPG--------NARHAKQLVDVLIEANQ 34 (121)
Q Consensus 9 ~AiTFft~~--------n~~~a~dLv~lL~ea~Q 34 (121)
.||-|.|.+ +.++++++++.|.+..+
T Consensus 35 ~aVIf~tk~g~~vC~dP~~~WVq~~i~~l~~~~~ 68 (70)
T 1ha6_A 35 NAIIFHTKKRKSVCADPKQNWVKRAVNLLSLRVK 68 (70)
T ss_dssp CEEEEEESSSSSEEECTTSHHHHHHHHHHHHHTS
T ss_pred CEEEEEecCCCEEeCCCChHHHHHHHHHHHHhhh
Confidence 466676543 45789999988876654
No 67
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=23.66 E-value=69 Score=19.45 Aligned_cols=28 Identities=4% Similarity=0.027 Sum_probs=23.1
Q ss_pred eEEEeeCCCChhHHHHHHHHHHHcCCCC
Q psy17913 9 TAYAFFTPGNARHAKQLVDVLIEANQSV 36 (121)
Q Consensus 9 ~AiTFft~~n~~~a~dLv~lL~ea~QeV 36 (121)
..+++..++.+.++.+|.++|.+.+..|
T Consensus 6 ~~l~v~~~DrpGila~vt~~la~~~~NI 33 (91)
T 1zpv_A 6 AIITVVGKDKSGIVAGVSGKIAELGLNI 33 (91)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEE
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCCE
Confidence 4578888889999999999999886544
No 68
>2yh5_A DAPX protein, BAMC; lipid binding protein, lipoprotein, BAM complex; 1.25A {Escherichia coli} PDB: 3sns_A
Probab=23.40 E-value=93 Score=21.47 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=19.9
Q ss_pred eeEEEeeCCC----ChhHHHHHHHHHHHc
Q psy17913 8 GTAYAFFTPG----NARHAKQLVDVLIEA 32 (121)
Q Consensus 8 G~AiTFft~~----n~~~a~dLv~lL~ea 32 (121)
.+.|+|.+++ +...++.|+.+|+++
T Consensus 88 ~t~V~v~d~~G~p~~~~~a~~ll~~L~~~ 116 (127)
T 2yh5_A 88 RSSLQFIDPKGHTLTQSQNDALVAVFQAA 116 (127)
T ss_dssp EEEEEEECTTSCBCCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 6899999876 456788888888875
No 69
>3b1s_B Flagellar biosynthetic protein FLHB; type III secretion system, protein transport, MEMB protein; 2.55A {Aquifex aeolicus}
Probab=29.04 E-value=17 Score=24.04 Aligned_cols=27 Identities=15% Similarity=0.324 Sum_probs=16.6
Q ss_pred CChhHHHHHHHHHHHcCCCCChHHHHHH
Q psy17913 17 GNARHAKQLVDVLIEANQSVTPALSEMS 44 (121)
Q Consensus 17 ~n~~~a~dLv~lL~ea~QeVP~~L~~~a 44 (121)
+|+.+|+.|.+- .+-+|+||++|-+..
T Consensus 45 e~~~LAr~Ly~~-~~ig~~IP~ely~aV 71 (87)
T 3b1s_B 45 RKPELARALYPA-VEVGKEISPKFYKAV 71 (87)
Confidence 355566666532 355789998776543
No 70
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=23.31 E-value=73 Score=23.99 Aligned_cols=29 Identities=14% Similarity=0.135 Sum_probs=22.8
Q ss_pred eEEEeeCCCChhHHHHHHHHHHHcCCCCC
Q psy17913 9 TAYAFFTPGNARHAKQLVDVLIEANQSVT 37 (121)
Q Consensus 9 ~AiTFft~~n~~~a~dLv~lL~ea~QeVP 37 (121)
+++|+........+++|++.|++....||
T Consensus 178 V~lS~l~~~~~~~~~~~i~~l~~~~~~~~ 206 (258)
T 2i2x_B 178 LTGTALMTTTMYAFKEVNDMLLENGIKIP 206 (258)
T ss_dssp EEEECCCTTTTTHHHHHHHHHHTTTCCCC
T ss_pred EEEEeeccCCHHHHHHHHHHHHhcCCCCc
Confidence 56777767777789999999998866554
No 71
>1vmj_A Hypothetical protein TM0723; putative thiamin phosphate synthase, structural genomics, JO center for structural genomics, JCSG; 1.52A {Thermotoga maritima} SCOP: d.273.1.1
Probab=23.25 E-value=59 Score=23.57 Aligned_cols=18 Identities=6% Similarity=-0.093 Sum_probs=15.6
Q ss_pred CCCChhHHHHHHHHHHHc
Q psy17913 15 TPGNARHAKQLVDVLIEA 32 (121)
Q Consensus 15 t~~n~~~a~dLv~lL~ea 32 (121)
+++|+.+..||.+.|.+-
T Consensus 65 nEndp~v~~Dl~~~l~rl 82 (151)
T 1vmj_A 65 NDDEPGLHHDFEVWLEKL 82 (151)
T ss_dssp ECCCHHHHHHHHHHHHHH
T ss_pred EcCCccHHHHHHHHHHHh
Confidence 567999999999999876
No 72
>1ve0_A Hypothetical protein (ST2072); structural genomics, zinc binding protein, metal binding Pro; 2.00A {Sulfolobus tokodaii}
Probab=22.85 E-value=65 Score=22.71 Aligned_cols=19 Identities=5% Similarity=0.074 Sum_probs=15.8
Q ss_pred eCCCChhHHHHHHHHHHHc
Q psy17913 14 FTPGNARHAKQLVDVLIEA 32 (121)
Q Consensus 14 ft~~n~~~a~dLv~lL~ea 32 (121)
++++|+.+..||.+.|++-
T Consensus 50 inEndp~v~~Dl~~~l~~l 68 (134)
T 1ve0_A 50 INEAESGLMKDFLNWAKKL 68 (134)
T ss_dssp EECCCHHHHHHHHHHHHHH
T ss_pred EECCCccHHHHHHHHHHHH
Confidence 3567999999999998875
No 73
>1vph_A Hypothetical protein SSO2532; YBJQ-like fold, structural genomics, joint center for struct genomics, JCSG, protein structure initiative; 1.76A {Sulfolobus solfataricus} SCOP: d.273.1.1
Probab=22.84 E-value=64 Score=23.35 Aligned_cols=18 Identities=6% Similarity=0.045 Sum_probs=15.1
Q ss_pred CCCChhHHHHHHHHHHHc
Q psy17913 15 TPGNARHAKQLVDVLIEA 32 (121)
Q Consensus 15 t~~n~~~a~dLv~lL~ea 32 (121)
+++|+.+..||...|.+-
T Consensus 65 nEnDp~v~~Dl~~~l~rl 82 (149)
T 1vph_A 65 NEHERGLMEDILTKIKEF 82 (149)
T ss_dssp ECCCHHHHHHHHHHHHHH
T ss_pred ECCCccHHHHHHHHHHHh
Confidence 567999999999988865
No 74
>2lxb_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; four-helix bundle, protein-protein interaction, GET5 binding GET pathway; NMR {Saccharomyces cerevisiae} PDB: 2lxc_B
Probab=22.82 E-value=84 Score=20.28 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=19.5
Q ss_pred CChhHHHHHHHHHHHc--CCCCChHHH
Q psy17913 17 GNARHAKQLVDVLIEA--NQSVTPALS 41 (121)
Q Consensus 17 ~n~~~a~dLv~lL~ea--~QeVP~~L~ 41 (121)
.++++|..||++|+.. .-+|+++-.
T Consensus 6 ~~K~la~sIi~FL~~~~~~~~ls~D~~ 32 (74)
T 2lxb_A 6 SKEEIAALIVNYFSSIVEKKEISEDGA 32 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSCHHHH
T ss_pred hHHHHHHHHHHHHHHhcccCCcCHHHH
Confidence 4677999999999877 667887543
No 75
>2lfw_B NEPR anti sigma factor; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=22.50 E-value=31 Score=21.81 Aligned_cols=28 Identities=7% Similarity=0.154 Sum_probs=21.7
Q ss_pred ChhHHHHHHHHHHHc-CCCCChHHHHHHH
Q psy17913 18 NARHAKQLVDVLIEA-NQSVTPALSEMSQ 45 (121)
Q Consensus 18 n~~~a~dLv~lL~ea-~QeVP~~L~~~a~ 45 (121)
+..|...|.++..+. .++||+.+.+|-+
T Consensus 25 ~~~Ig~~LR~~Yd~vv~E~VPDrFldLL~ 53 (62)
T 2lfw_B 25 DRDMGAALRSAYQKTIEEQVPDEMLDLLN 53 (62)
T ss_dssp STTHHHHHHHHHHTTTSSCCCCTTGGGST
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 678899999988865 6689987766644
No 76
>2p6h_A Hypothetical protein; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.95A {Aeropyrum pernix}
Probab=22.36 E-value=67 Score=22.63 Aligned_cols=19 Identities=16% Similarity=0.314 Sum_probs=15.5
Q ss_pred eCCCChhHHHHHHHHHHHc
Q psy17913 14 FTPGNARHAKQLVDVLIEA 32 (121)
Q Consensus 14 ft~~n~~~a~dLv~lL~ea 32 (121)
++++|+.+..||.+.|.+-
T Consensus 50 inEndp~v~~Dl~~~l~~l 68 (134)
T 2p6h_A 50 VNEAEPRLMEDIVEFIREL 68 (134)
T ss_dssp EECCCHHHHHHHHHHHHHH
T ss_pred EEcCCccHHHHHHHHHHHh
Confidence 3567999999999988865
No 77
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=22.05 E-value=49 Score=22.54 Aligned_cols=26 Identities=15% Similarity=-0.065 Sum_probs=20.8
Q ss_pred eEEEeeCCCChhHHHHHHHHHHHcCC
Q psy17913 9 TAYAFFTPGNARHAKQLVDVLIEANQ 34 (121)
Q Consensus 9 ~AiTFft~~n~~~a~dLv~lL~ea~Q 34 (121)
+++|+........++++++.|++++.
T Consensus 58 v~lS~~~~~~~~~~~~~i~~l~~~g~ 83 (137)
T 1ccw_A 58 ILVSSLYGQGEIDCKGLRQKCDEAGL 83 (137)
T ss_dssp EEEEECSSTHHHHHTTHHHHHHHTTC
T ss_pred EEEEecCcCcHHHHHHHHHHHHhcCC
Confidence 56777777777788999999998754
No 78
>2p6c_A AQ_2013 protein; NPPSFA, national project on protein structural and functiona analyses, riken structural genomics/proteomics initiative; 2.00A {Aquifex aeolicus}
Probab=21.84 E-value=66 Score=22.75 Aligned_cols=20 Identities=5% Similarity=0.019 Sum_probs=16.2
Q ss_pred eCCCChhHHHHHHHHHHHcC
Q psy17913 14 FTPGNARHAKQLVDVLIEAN 33 (121)
Q Consensus 14 ft~~n~~~a~dLv~lL~ea~ 33 (121)
++++|+.+..||...|.+--
T Consensus 52 inEndp~v~~Dl~~~l~~lv 71 (137)
T 2p6c_A 52 IQDDEEGLHEDIWEWLEKLA 71 (137)
T ss_dssp EECCCHHHHHHHHHHHHHHS
T ss_pred EEcCCccHHHHHHHHHHHHC
Confidence 35678999999999988763
No 79
>1vq8_2 50S ribosomal protein L39E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.137.1.1 PDB: 1vq4_2* 1vq5_2* 1vq6_2* 1vq7_2* 1s72_2* 1vq9_2* 1vqk_2* 1vql_2* 1vqm_2* 1vqn_2* 1vqo_2* 1vqp_2* 1yhq_2* 1yi2_2* 1yij_2* 1yit_2* 1yj9_2* 1yjn_2* 1yjw_2* 2otj_2* ...
Probab=21.46 E-value=81 Score=19.02 Aligned_cols=16 Identities=13% Similarity=-0.008 Sum_probs=11.6
Q ss_pred HHcCCCCChHHHHHHH
Q psy17913 30 IEANQSVTPALSEMSQ 45 (121)
Q Consensus 30 ~ea~QeVP~~L~~~a~ 45 (121)
...|.+||+|+.--..
T Consensus 16 ~kQNrpiP~Wv~~KT~ 31 (50)
T 1vq8_2 16 DNQNSRVPAWVMLKTD 31 (50)
T ss_dssp HHHSSCCCHHHHHHTT
T ss_pred HhccCCCCceEEEecC
Confidence 3468999999875443
No 80
>2vt1_B Surface presentation of antigens protein SPAS; specificity switch, virulence, transmembrane, inner membrane, FLHB, YSCU, T3SS, plasmid; 2.00A {Shigella flexneri} SCOP: d.367.1.1
Probab=21.44 E-value=21 Score=23.96 Aligned_cols=25 Identities=12% Similarity=0.038 Sum_probs=14.0
Q ss_pred ChhHHHHHHHHHHHcCCCCChHHHHH
Q psy17913 18 NARHAKQLVDVLIEANQSVTPALSEM 43 (121)
Q Consensus 18 n~~~a~dLv~lL~ea~QeVP~~L~~~ 43 (121)
|+.+|+.|..- .+-+|+||++|-+.
T Consensus 46 ~~~LAr~Ly~~-~~ig~~IP~ely~a 70 (93)
T 2vt1_B 46 DVKLARKLYKT-HTKYSFVDFEHLDE 70 (93)
T ss_dssp CHHHHHHHHHH-CCSSEECCTTTHHH
T ss_pred CHHHHHHHHHc-CCCCCccCHHHHHH
Confidence 45555555532 24568888765543
No 81
>2nz7_A NOD1, caspase recruitment domain-containing protein 4, CARD4; helix swapped, disulfide bond, apoptosis; 1.90A {Homo sapiens} PDB: 2nsn_A
Probab=21.19 E-value=29 Score=23.16 Aligned_cols=23 Identities=13% Similarity=0.147 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHcCCCCC---hHHH
Q psy17913 19 ARHAKQLVDVLIEANQSVT---PALS 41 (121)
Q Consensus 19 ~~~a~dLv~lL~ea~QeVP---~~L~ 41 (121)
...+.-+++.|++.+|..| |||.
T Consensus 72 ~~A~~~F~~~L~e~~~~~~~~~~~~~ 97 (98)
T 2nz7_A 72 EEVSEFFLYLLQQLADAYVDLRPWLL 97 (98)
T ss_dssp HHHHHHHHHHHHHHHHSSGGGHHHHH
T ss_pred HHHHHHHHHHHHHhCccchhhhhhhc
Confidence 3445556677777777665 4664
No 82
>3hj7_A TRNA(Ile)-lysidine synthase; helix-turn-helix, pseudo-knot, ATP-binding, ligase, nucleoti binding, tRNA processing; 2.20A {Geobacillus kaustophilus}
Probab=21.08 E-value=24 Score=25.01 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=15.9
Q ss_pred HHHHHHHHHcCCCCChHHHHHH
Q psy17913 23 KQLVDVLIEANQSVTPALSEMS 44 (121)
Q Consensus 23 ~dLv~lL~ea~QeVP~~L~~~a 44 (121)
+.|.++|++++ ||+|+.+..
T Consensus 74 KkLKklf~d~k--IP~~~R~~~ 93 (142)
T 3hj7_A 74 KKLKEIFIEAK--IPRMERDRW 93 (142)
T ss_dssp EEHHHHHHHTT--CCHHHHTTC
T ss_pred ccHHHHHHHcC--CCHHHhCCc
Confidence 67888888885 899988753
No 83
>3j20_Q 30S ribosomal protein S15P/S13E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.35 E-value=33 Score=25.32 Aligned_cols=24 Identities=8% Similarity=0.126 Sum_probs=18.5
Q ss_pred HHHHHHHHHHcC--CCCChHHHHHHH
Q psy17913 22 AKQLVDVLIEAN--QSVTPALSEMSQ 45 (121)
Q Consensus 22 a~dLv~lL~ea~--QeVP~~L~~~a~ 45 (121)
-+.|.++|++.+ .+||++|..|.+
T Consensus 75 G~ki~~iLk~~gl~p~iPEDL~~Lt~ 100 (158)
T 3j20_Q 75 NLTITRILEKHGLAPEIPEDLMFLIR 100 (158)
T ss_dssp CCCTHHHHHHHTCSCSSCHHHHHHHH
T ss_pred cCcHHHHHHHcCCCCCCHHHHHHHHH
Confidence 456788998875 589999888765
No 84
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=20.22 E-value=82 Score=20.78 Aligned_cols=24 Identities=17% Similarity=0.227 Sum_probs=17.3
Q ss_pred hhHHHHHHHHHHHcCCCCChHHHH
Q psy17913 19 ARHAKQLVDVLIEANQSVTPALSE 42 (121)
Q Consensus 19 ~~~a~dLv~lL~ea~QeVP~~L~~ 42 (121)
..++.||+.+|++.+.++.--|..
T Consensus 13 E~ll~eli~VLEKH~Ap~DLSLMv 36 (80)
T 2juz_A 13 SAIVNDMIAVLEKHKAPVDLSLIA 36 (80)
T ss_dssp HHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccHHHHH
Confidence 467899999999887655444443
No 85
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=20.06 E-value=1.1e+02 Score=20.75 Aligned_cols=27 Identities=11% Similarity=0.032 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHcCCCCCh-HHHHHHHh
Q psy17913 20 RHAKQLVDVLIEANQSVTP-ALSEMSQM 46 (121)
Q Consensus 20 ~~a~dLv~lL~ea~QeVP~-~L~~~a~~ 46 (121)
..+.+|.+||+.++-+|.+ |+..++..
T Consensus 21 ~tad~I~~ilkAaGveVe~~~~~lfa~a 48 (106)
T 3izc_t 21 ISSEKLLTLTNAANVPDENIWADIFAKA 48 (106)
T ss_dssp CSHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence 4578899999999999975 77777754
Done!