RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17913
(121 letters)
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation,
nucleotide-binding, hydrolase, RNA-binding, ATP-binding,
DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Length = 185
Score = 58.8 bits (143), Expect = 4e-12
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMS 47
G A +FF N K L+D+L+EA Q V L M+
Sbjct: 144 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEH 183
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 58.3 bits (142), Expect = 2e-11
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 8 GTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMG 50
G A +FF N K L+D+L+EA Q V L M+
Sbjct: 374 GLATSFFNERNINITKDLLDLLVEAKQEVPSWLENMAYEHHYK 416
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics,
structural genomic consortium, SGC, hydrolase; 2.60A
{Homo sapiens}
Length = 191
Score = 51.5 bits (124), Expect = 2e-09
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 8 GTAYAFFTPG-NARHAKQLVDVLIEANQSVTPALSEM 43
G A F + L +L+EA Q V P L +
Sbjct: 152 GIATTFINKACDESVLMDLKALLLEAKQKVPPVLQVL 188
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 48.7 bits (117), Expect = 5e-08
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 8 GTAYAFFTP-GNARHAKQLVDVLIEANQSVTPAL 40
G A +FF P + A LV +L + Q+V L
Sbjct: 398 GRATSFFDPEKDRAIAADLVKILEGSGQTVPDFL 431
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.30
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 18/66 (27%)
Query: 4 QCFIGTA----YAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMG-LYNKNSGF 58
Q F+ Y F L+ + + P++ + LYN N F
Sbjct: 80 QKFVEEVLRINYKF-----------LMSPI--KTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 59 SRFNVS 64
+++NVS
Sbjct: 127 AKYNVS 132
>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription,
mRNA, multiprotein complex; HET: UTP; 2.30A
{Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A
1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A*
1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A*
1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ...
Length = 1733
Score = 27.8 bits (61), Expect = 1.2
Identities = 15/91 (16%), Positives = 31/91 (34%)
Query: 18 NARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSRFNVSGGGGGGGGYKRKN 77
+++ ++ + VTP +E ++A FS SG G
Sbjct: 1452 KYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFTAY 1511
Query: 78 TDDYGSDGTRAKSGRWDQSSSGGYGGAAKGY 108
+ T + +S G+G ++ G+
Sbjct: 1512 GGADYGEATSPFGAYGEAPTSPGFGVSSPGF 1542
>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown
function, glycosidase, hydrolase, manganese,
metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}
Length = 450
Score = 25.8 bits (56), Expect = 4.3
Identities = 3/19 (15%), Positives = 9/19 (47%)
Query: 15 TPGNARHAKQLVDVLIEAN 33
+ A+QL + +++
Sbjct: 421 VQIDRSDAEQLFNDMLQCI 439
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase,
membrane-associated flavoprotein dehydrogenase,
interactions with lipids cell membrane; HET: TDP FAD;
2.50A {Escherichia coli} PDB: 3ey9_A*
Length = 549
Score = 25.9 bits (58), Expect = 4.5
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 25 LVDVLIEANQSVTPALSEMSQMSAMGLY 52
LVDV++ + P ++ Q LY
Sbjct: 522 LVDVVVAKEELAIPPQIKLEQAKGFSLY 549
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 25.4 bits (56), Expect = 6.4
Identities = 10/21 (47%), Positives = 11/21 (52%), Gaps = 1/21 (4%)
Query: 6 FIGTAYAFFTPGNARHAKQLV 26
F+G A T G AR AK V
Sbjct: 66 FLGCDVARVTNG-AREAKFAV 85
>4e4u_A Mandalate racemase/muconate lactonizing enzyme; mandelate racemase,
aldolase, structural genomics, biology; 1.35A
{Unidentified}
Length = 412
Score = 24.9 bits (55), Expect = 9.7
Identities = 7/45 (15%), Positives = 11/45 (24%)
Query: 71 GGYKRKNTDDYGSDGTRAKSGRWDQSSSGGYGGAAKGYQSRGYRG 115
GG + Y + G +D A G+
Sbjct: 118 GGRIHERLRSYTYLYPKNAKGEYDYDDPDLAAECAAENVKLGFTA 162
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.132 0.394
Gapped
Lambda K H
0.267 0.0747 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,875,520
Number of extensions: 101418
Number of successful extensions: 277
Number of sequences better than 10.0: 1
Number of HSP's gapped: 270
Number of HSP's successfully gapped: 26
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.4 bits)