RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17913
         (121 letters)



>d1s6ya2 d.162.1.2 (A:173-445) 6-phospho-beta-glucosidase {Bacillus
           stearothermophilus [TaxId: 1422]}
          Length = 270

 Score = 26.8 bits (59), Expect = 0.69
 Identities = 7/29 (24%), Positives = 17/29 (58%)

Query: 17  GNARHAKQLVDVLIEANQSVTPALSEMSQ 45
            +   AKQ++D ++EA++   P   + ++
Sbjct: 242 PSDTIAKQILDEMLEAHKEYLPQFFKQAK 270


>d1u8xx2 d.162.1.2 (X:170-445) Maltose-6'-phosphate glucosidase GlvA
           {Bacillus subtilis [TaxId: 1423]}
          Length = 276

 Score = 26.4 bits (58), Expect = 0.79
 Identities = 10/26 (38%), Positives = 17/26 (65%)

Query: 17  GNARHAKQLVDVLIEANQSVTPALSE 42
            NAR A+ +++ L+EAN+   P L +
Sbjct: 249 PNARVARLILEDLVEANKDFWPELDQ 274


>d1up7a2 d.162.1.2 (A:163-415) 6-phospho-beta-glucosidase
           {Thermotoga maritima [TaxId: 2336]}
          Length = 253

 Score = 26.4 bits (58), Expect = 1.0
 Identities = 6/18 (33%), Positives = 12/18 (66%)

Query: 17  GNARHAKQLVDVLIEANQ 34
            +   AK L++ ++EAN+
Sbjct: 230 PDVEDAKDLLEEILEANR 247


>d2jg0a1 a.102.1.9 (A:37-547) Periplasmic trehalase TreA
           {Escherichia coli [TaxId: 562]}
          Length = 511

 Score = 24.7 bits (53), Expect = 3.6
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 52  YNKNSGF-SRFNVSGGGGGGGGYKRKNTDDYG 82
           Y++      +++VS  G GGGG +    D +G
Sbjct: 452 YDREKKLVEKYDVSTTGTGGGGGEYPLQDGFG 483


>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK)
           {Streptococcus pneumoniae r6 [TaxId: 171101]}
          Length = 135

 Score = 23.5 bits (50), Expect = 6.9
 Identities = 9/79 (11%), Positives = 24/79 (30%)

Query: 1   MSSQCFIGTAYAFFTPGNARHAKQLVDVLIEANQSVTPALSEMSQMSAMGLYNKNSGFSR 60
            SS+  + +       G +    + V+V  +  + ++  +                  ++
Sbjct: 36  TSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAK 95

Query: 61  FNVSGGGGGGGGYKRKNTD 79
            + +GGG  G         
Sbjct: 96  SSGAGGGDCGIALSFDAQS 114


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.132    0.394 

Gapped
Lambda     K      H
   0.267   0.0522    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 448,403
Number of extensions: 18396
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 8
Length of query: 121
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 46
Effective length of database: 1,377,846
Effective search space: 63380916
Effective search space used: 63380916
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.4 bits)